Psyllid ID: psy5049

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
IRLISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGGPGIFPLQHRADSENL
Secondary Structure (PSIPRED)
cHHHHHHHHHccHHHHHHHcHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccEEEEEEcccccEEEEEEEEEEccccccccEEEEEccccccccccccccccccEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccEEEEcccccccEEEEEEccccccEEEEEEEccccccHHcEEEEEHHccHHHHHccccccccEEEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
IRLISVLAQNTRYFRRKLNRLGLILYVLFQaqtkpprshcicfisgIRRISVLAHNTRYFRRKLNRLGLivyghrdspvvPVLVFFFSKVgqtsiglgveqtalndglslyesshlrsanlwnrphspslmavfrgggpgifplqhradsenl
Flexible Loop (DISEMBL)
irlisvlaqntryfRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGGPGIFPlqhradsenl
Low Complexity Region (SEG)
IRLISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDspvvpvlvfffskvGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGGPGIFPLQHRADSENL
Disordered region (IsUnstruct)
**LISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNR****SLMAVFRGGGPGIF***********
Disordered Region (DISOPRED)
IRLISV*AQNTRYFRRKLNRLGLILYVLFQAQT***************RISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSA*LWNRPHSPSLMAVFRGGGPGIFPLQ********
Disordered Region (DISEMBL)
IRLISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGGPGIFPLQHRADSENL
Disordered Region (DISPRO)
IRLISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGGPGIFPLQH*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
IRLISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGGPGIFPLQHRADSENL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
P97363	560	Serine palmitoyltransfera	yes	N/A	0.274	0.075	0.547	1e-08
O15270	562	Serine palmitoyltransfera	yes	N/A	0.274	0.074	0.523	2e-08
Q8BG54	563	Serine palmitoyltransfera	no	N/A	0.483	0.131	0.360	5e-08
O54694	560	Serine palmitoyltransfera	yes	N/A	0.274	0.075	0.5	6e-08
Q20375	558	Serine palmitoyltransfera	yes	N/A	0.300	0.082	0.543	8e-08
Q9NUV7	552	Serine palmitoyltransfera	no	N/A	0.209	0.057	0.456	5e-07
Q9XVI6	512	Serine palmitoyltransfera	no	N/A	0.169	0.050	0.5	5e-07
P40970	561	Serine palmitoyltransfera	yes	N/A	0.326	0.089	0.5	6e-07
Q09925	603	Serine palmitoyltransfera	yes	N/A	0.326	0.082	0.48	8e-07
P48241	562	Serine palmitoyltransfera	yes	N/A	0.294	0.080	0.511	6e-06

>sp|P97363|SPTC2_MOUSE Serine palmitoyltransferase 2 OS=Mus musculus GN=Sptlc2 PE=2 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/42 (54%), Positives = 33/42 (78%)

Query: 50  ISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVG 91
           I  LA NTRYFRR+L  +G I+YG+ DSPVVP++++  +K+G
Sbjct: 437 IQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIG 478

Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1/SPTLC1 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC2-SSSPTA complex shows a strong preference for C16-CoA substrate, while the SPTLC1-SPTLC2-SSSPTB complex displays a preference for C18-CoA substrate.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 5EC: 0

>sp|O15270|SPTC2_HUMAN Serine palmitoyltransferase 2 OS=Homo sapiens GN=SPTLC2 PE=1 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 33/42 (78%)

Query: 50  ISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVG 91
           +  LA NTRYFRR+L  +G I+YG+ DSPVVP++++  +K+G
Sbjct: 439 VQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIG 480

Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1/SPTLC1 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC2-SSSPTA complex shows a strong preference for C16-CoA substrate, while the SPTLC1-SPTLC2-SSSPTB complex displays a preference for C18-CoA substrate.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q8BG54|SPTC3_MOUSE Serine palmitoyltransferase 3 OS=Mus musculus GN=Sptlc3 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 12/86 (13%)

Query: 44  ISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS--------- 94
           I G+ RI  L  N +YFRR+L  +G I+YG+  SPV+PVL++  +KV   S         
Sbjct: 425 IGGMERIQQLKENIKYFRRRLKEMGFIIYGNDFSPVIPVLLYMPAKVSAFSRFLLKKKIS 484

Query: 95  -IGLGVEQTALNDGLSLY--ESSHLR 117
            + +G   T+L +G + +   S+H R
Sbjct: 485 VVVVGFPATSLPEGRARFSMSSAHTR 510

Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1/SPTLC1 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC3-SSSPTA isozyme uses both C14-CoA and C16-CoA as substrates, while the SPTLC1-SPTLC3-SSSPTB has the ability to use a broader range of acyl-CoAs without apparent preference.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|O54694|SPTC2_CRIGR Serine palmitoyltransferase 2 OS=Cricetulus griseus GN=SPTLC2 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 33/42 (78%)

Query: 50  ISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVG 91
           +  LA NT+YFRR+L  +G I+YG+ DSPVVP++++  +K+G
Sbjct: 437 VQQLAENTKYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIG 478

Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1/SPTLC1 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC2-SSSPTA complex shows a strong preference for C16-CoA substrate, while the SPTLC1-SPTLC2-SSSPTB complex displays a preference for C18-CoA substrate.

Cricetulus griseus (taxid: 10029)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q20375|SPTC2_CAEEL Serine palmitoyltransferase 2 OS=Caenorhabditis elegans GN=sptl-2 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 32/46 (69%)

Query: 46  GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVG 91
           G +RI  LA N+ YFR KL + G IVYG  DSPVVP+L++F +  G
Sbjct: 440 GAQRIERLARNSHYFRMKLKQNGFIVYGSNDSPVVPMLIYFPTMCG 485

Component of the serine palmitoyltransferase (SPT) that catalyzes the first committed step in sphingolipid biosynthesis, which is the condensation of an acyl-CoA species and L-serine. The catalytic core is composed of a heterodimer of sptl-1 and sptl-2 or sptl-1 and sptl-3 (By similarity). Required for the specification of abicobasal polarity and development of the gut lumen.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q9NUV7|SPTC3_HUMAN Serine palmitoyltransferase 3 OS=Homo sapiens GN=SPTLC3 PE=1 SV=3

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 34/46 (73%)

Query: 46  GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVG 91
           G++R+  LA NTRYFR++L  +G I+YG+ ++ VVP+L++   KV 
Sbjct: 427 GLQRVQQLAKNTRYFRQRLQEMGFIIYGNENASVVPLLLYMPGKVA 472

Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1/SPTLC1 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC3-SSSPTA isozyme uses both C14-CoA and C16-CoA as substrates, while the SPTLC1-SPTLC3-SSSPTB has the ability to use a broader range of acyl-CoAs without apparent preference.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q9XVI6|SPTC3_CAEEL Serine palmitoyltransferase 3 OS=Caenorhabditis elegans GN=sptl-3 PE=3 SV=2

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 32/42 (76%)

Query: 53  LAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS 94
           L  N+RYFR++L + G +VYG+ DSPVVP++ F+ +KV + S
Sbjct: 408 LLENSRYFRKELRKRGFLVYGNNDSPVVPLMTFYITKVVEFS 449

Component of the serine palmitoyltransferase (SPT) that catalyzes the first committed step in sphingolipid biosynthesis, which is the condensation of an acyl-CoA species and L-serine. The catalytic core is composed of a heterodimer of sptl-1 and sptl-2 or sptl-1 and sptl-3 (By similarity). Required for the specification of abicobasal polarity and development of the gut lumen.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|P40970|LCB2_YEAST Serine palmitoyltransferase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LCB2 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 33/50 (66%)

Query: 41  ICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKV 90
           IC   G  R+  +A N+RY R  L RLG IVYG  DSPV+P+L++  SK+
Sbjct: 417 ICPGQGTERLQRIAFNSRYLRLALQRLGFIVYGVADSPVIPLLLYCPSKM 466

Catalytic subunit of serine palmitoyltransferase (SPT), which catalyzes the committed step in the synthesis of sphingolipids, the condensation of serine with palmitoyl CoA to form the long chain base 3-ketosphinganine.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|Q09925|LCB2_SCHPO Serine palmitoyltransferase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lcb2 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 45  SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS 94
           +G+ RI  LA N+RY R  L RLG I++G+ DSPVVP+L++   K+   S
Sbjct: 453 AGLERIERLAFNSRYIRLGLKRLGFIIFGNDDSPVVPLLLYNPGKINAFS 502

Catalytic subunit of serine palmitoyltransferase (SPT), which catalyzes the committed step in the synthesis of sphingolipids, the condensation of serine with palmitoyl CoA to form the long chain base 3-ketosphinganine.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

>sp|P48241|LCB2_KLULA Serine palmitoyltransferase 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=LCB2 PE=3 SV=2

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 46  GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKV 90
           G  R+  +A N RY R  L RLG IVYG  DSPV+P+L++  SK+
Sbjct: 421 GQERLQRIAFNARYLRLALQRLGFIVYGIADSPVIPMLLYAPSKM 465

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 5

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
307199211	470	Serine palmitoyltransferase 2 [Harpegnat	0.405	0.131	0.486	8e-12
156543491	555	PREDICTED: serine palmitoyltransferase 2	0.411	0.113	0.465	1e-11
380012527	551	PREDICTED: serine palmitoyltransferase 2	0.405	0.112	0.486	2e-11
328781094	551	PREDICTED: serine palmitoyltransferase 2	0.405	0.112	0.486	2e-11
340718879	551	PREDICTED: serine palmitoyltransferase 2	0.405	0.112	0.486	2e-11
350410144	551	PREDICTED: serine palmitoyltransferase 2	0.405	0.112	0.486	2e-11
383864225	552	PREDICTED: serine palmitoyltransferase 2	0.405	0.112	0.472	5e-11
307188896	548	Serine palmitoyltransferase 2 [Camponotu	0.411	0.114	0.465	6e-11
195475518	599	GE21012 [Drosophila yakuba] gi|194176132	0.411	0.105	0.465	7e-11
5821160	597	serine palmitoyl transferase LCB2 subuni	0.405	0.103	0.472	1e-10

>gi|307199211|gb|EFN79898.1| Serine palmitoyltransferase 2 [Harpegnathos saltator]

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 10/72 (13%)

Query: 46  GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQ----------TSI 95
           G RR+  LA NTRYFRR+LN++G+I+YG+ DSPVVP+LV+ FSK+G            ++
Sbjct: 347 GERRLKQLARNTRYFRRRLNQIGVIIYGNEDSPVVPMLVYLFSKIGAVVRTFIAHKIATV 406

Query: 96  GLGVEQTALNDG 107
           G+G   T L +G
Sbjct: 407 GVGFPATPLMEG 418

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156543491|ref|XP_001601893.1| PREDICTED: serine palmitoyltransferase 2-like [Nasonia vitripennis]

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 50/73 (68%), Gaps = 10/73 (13%)

Query: 45  SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQ----------TS 94
           +G +RI  LA NTRYFRR+LN++G+I+YG+ DSPV+P+LV+ +SK+G            S
Sbjct: 431 AGKKRIKQLARNTRYFRRRLNQIGVIIYGNEDSPVIPMLVYLYSKIGTVVRTLTTRNIAS 490

Query: 95  IGLGVEQTALNDG 107
           +G+G   T L +G
Sbjct: 491 VGVGFPATPLMEG 503

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012527|ref|XP_003690331.1| PREDICTED: serine palmitoyltransferase 2-like [Apis florea]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 10/72 (13%)

Query: 46  GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQ----------TSI 95
           G RR   LA NTRYFRR+LN++G+I+YG+ DSPVVP+LV+ FSK+G            ++
Sbjct: 428 GKRRTKQLARNTRYFRRRLNQIGVIIYGNEDSPVVPMLVYLFSKIGSVVRTLTTYNIAAV 487

Query: 96  GLGVEQTALNDG 107
           G+G   T L +G
Sbjct: 488 GVGFPATPLMEG 499

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781094|ref|XP_394921.3| PREDICTED: serine palmitoyltransferase 2-like [Apis mellifera]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 10/72 (13%)

Query: 46  GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQ----------TSI 95
           G RR   LA NTRYFRR+LN++G+I+YG+ DSPVVP+LV+ FSK+G            ++
Sbjct: 428 GKRRTKQLARNTRYFRRRLNQIGVIIYGNEDSPVVPMLVYLFSKIGSVVRTLTTYNIAAV 487

Query: 96  GLGVEQTALNDG 107
           G+G   T L +G
Sbjct: 488 GVGFPATPLMEG 499

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718879|ref|XP_003397890.1| PREDICTED: serine palmitoyltransferase 2-like [Bombus terrestris]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 10/72 (13%)

Query: 46  GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQ----------TSI 95
           G RR   LA NTRYFRR+LN++G+I+YG+ DSPVVP+LV+ FSK+G            ++
Sbjct: 428 GKRRTKQLARNTRYFRRRLNQIGVIIYGNEDSPVVPMLVYLFSKIGAVVRTLTTYNIAAV 487

Query: 96  GLGVEQTALNDG 107
           G+G   T L +G
Sbjct: 488 GVGFPATPLMEG 499

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350410144|ref|XP_003488961.1| PREDICTED: serine palmitoyltransferase 2-like [Bombus impatiens]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 10/72 (13%)

Query: 46  GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQ----------TSI 95
           G RR   LA NTRYFRR+LN++G+I+YG+ DSPVVP+LV+ FSK+G            ++
Sbjct: 428 GKRRTKQLARNTRYFRRRLNQIGVIIYGNEDSPVVPMLVYLFSKIGAVVRTLTTYNIAAV 487

Query: 96  GLGVEQTALNDG 107
           G+G   T L +G
Sbjct: 488 GVGFPATPLMEG 499

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864225|ref|XP_003707580.1| PREDICTED: serine palmitoyltransferase 2-like [Megachile rotundata]

 Score = 72.4 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 10/72 (13%)

Query: 46  GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQ----------TSI 95
           G +R   LA NTRYFRR+LN++G+I+YG+ DSPVVP+LV+ FSK+G            ++
Sbjct: 429 GKKRTKQLARNTRYFRRRLNQIGVIIYGNEDSPVVPMLVYLFSKIGAVVRTLTTHNIAAV 488

Query: 96  GLGVEQTALNDG 107
           G+G   T L +G
Sbjct: 489 GVGFPATPLMEG 500

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188896|gb|EFN73445.1| Serine palmitoyltransferase 2 [Camponotus floridanus]

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 10/73 (13%)

Query: 45  SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQ----------TS 94
           +G RRI  LA NTRYFRR+LN++G+I YG+ DSPVVP+LV+ +SK+             +
Sbjct: 424 AGERRIKQLARNTRYFRRRLNQIGVITYGNEDSPVVPMLVYLYSKIAAVIRTLTTYNIAT 483

Query: 95  IGLGVEQTALNDG 107
           +G+G   T+L  G
Sbjct: 484 VGVGFPATSLMQG 496

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195475518|ref|XP_002090031.1| GE21012 [Drosophila yakuba] gi|194176132|gb|EDW89743.1| GE21012 [Drosophila yakuba]

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 10/73 (13%)

Query: 45  SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQ----------TS 94
           +G ++I  LA NTRYFRR+L +LG+I YGH DSPVVP+LV+ FSK+G            +
Sbjct: 482 TGRKKIHQLARNTRYFRRRLAQLGVITYGHEDSPVVPMLVYLFSKIGAVVRTLTTRHIAA 541

Query: 95  IGLGVEQTALNDG 107
           +G G   T + +G
Sbjct: 542 VGAGFPATPIMEG 554

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|5821160|dbj|BAA83721.1| serine palmitoyl transferase LCB2 subunit [Drosophila melanogaster]

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 10/72 (13%)

Query: 46  GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQ----------TSI 95
           G ++I  LA NTRYFRR+L +LG+I YGH DSPVVP+LV+ FSK+G            ++
Sbjct: 481 GRKKIHQLARNTRYFRRRLAQLGVITYGHEDSPVVPMLVYLFSKIGAVVRTLTTRHIAAV 540

Query: 96  GLGVEQTALNDG 107
           G G   T + +G
Sbjct: 541 GAGFPATPIMEG 552

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
UNIPROTKB|H0Y733	121	SPTLC3 "Serine palmitoyltransf	0.202	0.256	0.483	0.0001
FB|FBgn0002524	597	lace "lace" [Drosophila melano	0.202	0.051	0.612	0.00016

UNIPROTKB|H0Y733 SPTLC3 "Serine palmitoyltransferase 3" [Homo sapiens (taxid:9606)]

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query:    46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRD 76
             G++R+  LA NTRYFR++L  +G I+YG+ +
Sbjct:    25 GLQRVQQLAKNTRYFRQRLQEMGFIIYGNEN 55

GO:0003824 "catalytic activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

FB|FBgn0002524 lace "lace" [Drosophila melanogaster (taxid:7227)]

 Score = 102 (41.0 bits), Expect = 0.00016, P = 0.00016
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query:    46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRD 76
             G ++I  LA NTRYFRR+L +LG+I YGH D
Sbjct:   481 GRKKIHQLARNTRYFRRRLAQLGVITYGHED 511


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.142   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      153       139   0.00091  102 3  11 22  0.36    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  128 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.95u 0.07s 11.02t   Elapsed:  00:00:05
  Total cpu time:  10.95u 0.07s 11.02t   Elapsed:  00:00:05
  Start:  Thu Aug 15 15:17:42 2013   End:  Thu Aug 15 15:17:47 2013

GO:0004758 "serine C-palmitoyltransferase activity" evidence=ISS;NAS;IDA

GO:0007444 "imaginal disc development" evidence=IMP

GO:0030148 "sphingolipid biosynthetic process" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	153
cd06454	349	cd06454, KBL_like, KBL_like; this family belongs t	2e-06
PLN02483	489	PLN02483, PLN02483, serine palmitoyltransferase	4e-05

>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 16/50 (32%), Positives = 20/50 (40%)

Query: 45  SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS 94
            G  R   L  N RY RR L  LG  V G     + P++    +K    S
Sbjct: 251 GGPERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDPAKAVAFS 300

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349

>gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 15/49 (30%), Positives = 32/49 (65%)

Query: 46  GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS 94
           G ++++ +  N+ +FR +L ++G  V G  DSPV+P++++  +K+   S
Sbjct: 367 GAQKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFS 415

Length = 489

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.84
PLN02955	476	8-amino-7-oxononanoate synthase	99.73
KOG1359|consensus	417		99.68
KOG1360|consensus	570		99.63
KOG1357|consensus	519		99.48
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.41
PLN02483	489	serine palmitoyltransferase	99.16
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.16
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.15
PRK13392	410	5-aminolevulinate synthase; Provisional	99.14
PRK13393	406	5-aminolevulinate synthase; Provisional	99.09
PRK09064	407	5-aminolevulinate synthase; Validated	99.08
PLN02822	481	serine palmitoyltransferase	99.02
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.0
PRK07179	407	hypothetical protein; Provisional	98.79
KOG1358|consensus	467		98.75
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	98.73
KOG1357|consensus	519		98.53
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	98.26
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	98.17
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	97.88
PRK02948	381	cysteine desulfurase; Provisional	97.86
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	97.82
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	97.81
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	97.8
PRK07505	402	hypothetical protein; Provisional	97.76
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	97.7
PTZ00094	452	serine hydroxymethyltransferase; Provisional	97.67
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	97.63
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	97.6
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	97.58
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	97.55
PRK13520	371	L-tyrosine decarboxylase; Provisional	97.52
PLN03226	475	serine hydroxymethyltransferase; Provisional	97.5
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	97.49
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	97.48
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	97.4
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	97.13
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	97.12
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	97.1
PRK07678	451	aminotransferase; Validated	97.01
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	96.98
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	96.92
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	96.91
PRK10874	401	cysteine sulfinate desulfinase; Provisional	96.85
PRK03715	395	argD acetylornithine transaminase protein; Provisi	96.83
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	96.8
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	96.79
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	96.78
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	96.78
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	96.72
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	96.66
PRK04366	481	glycine dehydrogenase subunit 2; Validated	96.6
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	96.57
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	96.57
PRK00451	447	glycine dehydrogenase subunit 1; Validated	96.45
KOG1359|consensus	417		96.38
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	96.37
PRK10534	333	L-threonine aldolase; Provisional	96.28
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	96.28
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	96.27
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	96.25
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	96.25
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	96.19
PRK03244	398	argD acetylornithine aminotransferase; Provisional	96.19
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	96.19
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	96.18
PLN02721	353	threonine aldolase	96.16
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	96.15
TIGR01814	406	kynureninase kynureninase. This model describes ky	96.15
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	96.1
PRK02936	377	argD acetylornithine aminotransferase; Provisional	95.96
PRK07908	349	hypothetical protein; Provisional	95.92
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	95.77
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	95.77
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	95.76
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	95.73
PRK03080	378	phosphoserine aminotransferase; Provisional	95.71
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	95.69
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	95.69
PLN02624	474	ornithine-delta-aminotransferase	95.67
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	95.67
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	95.66
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	95.63
PLN02414	993	glycine dehydrogenase (decarboxylating)	95.58
PRK02769	380	histidine decarboxylase; Provisional	95.51
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	95.32
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	95.29
PRK02731	367	histidinol-phosphate aminotransferase; Validated	95.15
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	95.01
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	94.92
cd00609	350	AAT_like Aspartate aminotransferase family. This f	94.91
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	94.81
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	94.79
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	94.69
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	94.64
PRK05367	954	glycine dehydrogenase; Provisional	94.59
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	94.56
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	94.54
PRK04260	375	acetylornithine aminotransferase; Provisional	94.44
PTZ00125	400	ornithine aminotransferase-like protein; Provision	94.37
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	94.35
PLN03032	374	serine decarboxylase; Provisional	94.27
PLN02409	401	serine--glyoxylate aminotransaminase	94.26
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	94.25
PLN02263	470	serine decarboxylase	94.13
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	94.09
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	94.06
PRK06108	382	aspartate aminotransferase; Provisional	93.94
PRK08297	443	L-lysine aminotransferase; Provisional	93.85
PLN02590	539	probable tyrosine decarboxylase	93.78
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	93.65
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	93.58
PRK06541	460	hypothetical protein; Provisional	93.37
PRK01278	389	argD acetylornithine transaminase protein; Provisi	92.98
PRK04612	408	argD acetylornithine transaminase protein; Provisi	92.69
PLN02760	504	4-aminobutyrate:pyruvate transaminase	92.29
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	91.99
PLN02724	805	Molybdenum cofactor sulfurase	91.94
PLN02452	365	phosphoserine transaminase	91.91
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	91.86
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	91.84
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	91.81
PLN02880	490	tyrosine decarboxylase	91.7
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	91.69
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	91.55
PRK05764	393	aspartate aminotransferase; Provisional	91.5
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	91.47
PRK13580	493	serine hydroxymethyltransferase; Provisional	91.45
PRK09082	386	methionine aminotransferase; Validated	91.45
PLN02414	993	glycine dehydrogenase (decarboxylating)	91.39
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	91.25
PRK00950	361	histidinol-phosphate aminotransferase; Validated	91.13
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	90.99
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	90.98
PRK09105	370	putative aminotransferase; Provisional	90.93
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	90.92
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	90.87
PRK07681	399	aspartate aminotransferase; Provisional	90.83
PRK06425	332	histidinol-phosphate aminotransferase; Validated	90.45
PRK12566	954	glycine dehydrogenase; Provisional	90.44
PRK02627	396	acetylornithine aminotransferase; Provisional	90.42
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	90.02
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	90.02
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	89.95
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	89.86
PRK07777	387	aminotransferase; Validated	89.63
PRK07682	378	hypothetical protein; Validated	89.0
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	88.98
PRK08912	387	hypothetical protein; Provisional	88.59
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	87.74
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	87.72
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	87.7
PRK08175	395	aminotransferase; Validated	87.67
PRK06290	410	aspartate aminotransferase; Provisional	87.22
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	87.15
PLN00175	413	aminotransferase family protein; Provisional	87.14
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	87.06
PRK08056	356	threonine-phosphate decarboxylase; Provisional	86.88
PRK14012	404	cysteine desulfurase; Provisional	86.62
PRK08068	389	transaminase; Reviewed	86.39
PRK06225	380	aspartate aminotransferase; Provisional	86.34
PLN02483	489	serine palmitoyltransferase	86.21
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	86.05
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	85.96
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	85.47
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	85.46
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	85.23
PRK03321	352	putative aminotransferase; Provisional	84.72
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	83.81
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	83.68
PRK05367	954	glycine dehydrogenase; Provisional	83.4
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	83.24
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	83.2
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	83.06
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	82.97
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	82.08
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	82.0
PRK07309	391	aromatic amino acid aminotransferase; Validated	81.65
PRK08088	425	4-aminobutyrate aminotransferase; Validated	80.37
PLN02651	364	cysteine desulfurase	80.17
PRK07683	387	aminotransferase A; Validated	80.07

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.84  E-value=1.3e-20  Score=164.36  Aligned_cols=114  Identities=19%  Similarity=0.266  Sum_probs=97.8

Q ss_pred             HHHHHHhhhcccEEeecCCCCCCCCcccc----c-ccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC
Q psy5049          12 RYFRRKLNRLGLILYVLFQAQTKPPRSHC----I-CFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF   86 (153)
Q Consensus        12 ~~~~~~l~~~g~~~~~~~~~~~~p~~~~~----l-~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~   86 (153)
                      .|+|++  ..+|+    ||.++||..+..    + ..++++++|++|++++.+|++.++..|+.+ ..+.|||+||++|+
T Consensus       259 d~L~~~--ar~~i----fStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~~~~~-~~s~s~I~pv~~gd  331 (388)
T COG0156         259 DYLRNR--ARPFI----FSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKALGLVL-LPSESPIIPVILGD  331 (388)
T ss_pred             HHHHHh--CCcee----ccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcc-CCCCCCeeeeEeCC
Confidence            345544  57888    999999975433    2 234789999999999999999999999987 46889999999999


Q ss_pred             chHHHhcc----------ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049          87 FSKVGQTS----------IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus        87 ~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~  133 (153)
                      ++++.+++          .+|+|||||+|++|+|+|+||.||++||+++++ ++..+
T Consensus       332 ~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~-~l~~~  387 (388)
T COG0156         332 EERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAE-ALSEV  387 (388)
T ss_pred             HHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHH-HHHhh
Confidence            99888876          889999999999999999999999999999998 77654

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.73  E-value=1.2e-17  Score=149.01  Aligned_cols=110  Identities=13%  Similarity=0.100  Sum_probs=90.2

Q ss_pred             hcccEEeecCCCCCCCCcccc-----cccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc
Q psy5049          20 RLGLILYVLFQAQTKPPRSHC-----ICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS   94 (153)
Q Consensus        20 ~~g~~~~~~~~~~~~p~~~~~-----l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a   94 (153)
                      ..+|+    ||+.+||..+.+     .....++++|++|++|++||++.   .|+++    .|||+||++|++.++..++
T Consensus       342 ~~~~i----fStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~---~G~~~----~sPI~pI~ig~~~~a~~~~  410 (476)
T PLN02955        342 GRSFI----FSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL---SGVDI----SSPIISLVVGNQEKALKAS  410 (476)
T ss_pred             CCCCe----ecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---cCCCC----CCCEEEEEeCCHHHHHHHH
Confidence            45676    777888864433     22235678999999999999994   47754    3899999999999888765


Q ss_pred             ----------ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhcCCCce
Q psy5049          95 ----------IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGGPGI  141 (153)
Q Consensus        95 ----------~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~~~~~~  141 (153)
                                .+|+||+||+|++|+||++||.||+|||+++++ +|..+....+..+
T Consensus       411 ~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~-~L~~~~~~~~~~~  466 (476)
T PLN02955        411 RYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLIT-ALSSCLDFDNTAT  466 (476)
T ss_pred             HHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHH-HHHHHHhhhccee
Confidence                      888999999999999999999999999999999 8888877655544

>KOG1359|consensus

Probab=99.68  E-value=1.5e-16  Score=135.38  Aligned_cols=106  Identities=17%  Similarity=0.182  Sum_probs=87.6

Q ss_pred             CCCCCCCCcccc----ccc-ccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc---------
Q psy5049          29 FQAQTKPPRSHC----ICF-ISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS---------   94 (153)
Q Consensus        29 ~~~~~~p~~~~~----l~~-~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a---------   94 (153)
                      ||-++||-.--+    +.. .......++.+.|+.+|++.+...||++.+ ..+||+||++||.+.+.+++         
T Consensus       292 FSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~aGftIsg-~~hPI~pv~lGda~lA~~~ad~lLk~Gi~  370 (417)
T KOG1359|consen  292 FSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAAGFTISG-ASHPICPVMLGDARLASKMADELLKRGIY  370 (417)
T ss_pred             ecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCceecC-CCCCccceecccHHHHHHHHHHHHhcCce
Confidence            899999842111    111 134567788899999999999999999865 55899999999999988887         


Q ss_pred             -ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049          95 -IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus        95 -~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                       .+++||+||+|.+|+|+.+||.||+||||++++ ++..+.+.
T Consensus       371 Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~-Af~~vgr~  412 (417)
T KOG1359|consen  371 VIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIE-AFSEVGRF  412 (417)
T ss_pred             EEeecCCcCCCCceEEEEEEehhcCHHHHHHHHH-HHHHHHHh
Confidence             788999999999999999999999999999998 77666554

>KOG1360|consensus

Probab=99.63  E-value=1.4e-15  Score=133.48  Aligned_cols=119  Identities=18%  Similarity=0.112  Sum_probs=101.3

Q ss_pred             hcccEEeecCCCCCCCCcccc-------cccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHh
Q psy5049          20 RLGLILYVLFQAQTKPPRSHC-------ICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQ   92 (153)
Q Consensus        20 ~~g~~~~~~~~~~~~p~~~~~-------l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~   92 (153)
                      -.||+    |--++||-.++=       +.+.++..+|..-+.|+.|+++.|.+.|+.++ ..+|+||||.+||..++.+
T Consensus       396 AaGFI----FTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi-~~pSHIiPv~vgda~l~~~  470 (570)
T KOG1360|consen  396 AAGFI----FTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVI-PNPSHIIPVRVGDAALAKQ  470 (570)
T ss_pred             cCceE----EecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCccc-CCCcceeeeeccCHHHHHH
Confidence            46999    888999975543       66778899999999999999999999999986 5779999999999987777


Q ss_pred             cc-----------ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhcCCCceee
Q psy5049          93 TS-----------IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGGPGIFP  143 (153)
Q Consensus        93 ~a-----------~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~~~~~~~~  143 (153)
                      ++           .+|.|||||.|++||||+.+..||++.++.++++++..|.+++-|-+-+
T Consensus       471 ~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~l~~~~~  532 (570)
T KOG1360|consen  471 ASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVGLPRVRD  532 (570)
T ss_pred             HHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcCCcccCC
Confidence            65           8899999999999999999999999999999994555555655554433

>KOG1357|consensus

Probab=99.48  E-value=1.4e-14  Score=128.00  Aligned_cols=107  Identities=32%  Similarity=0.480  Sum_probs=91.5

Q ss_pred             ecCCCCCCCCcccc-------c----ccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-
Q psy5049          27 VLFQAQTKPPRSHC-------I----CFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS-   94 (153)
Q Consensus        27 ~~~~~~~~p~~~~~-------l----~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a-   94 (153)
                      ..+.++++|+++..       +    .+..+.++.++|.+|++|||..|+.+||.++|+.+|||+|+++..+.+...++ 
T Consensus       373 ~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~dSpVvplll~~~~k~~~f~r  452 (519)
T KOG1357|consen  373 ALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYGNNDSPVVPLLLYGPAKIVAFSR  452 (519)
T ss_pred             eeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEecCCCCCcceeeecCcccccHHHH
Confidence            35777888886654       1    12356889999999999999999999999999999999999999998888876 


Q ss_pred             ---------ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049          95 ---------IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus        95 ---------~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                               .++.||++|.-++|.|+|+||.||+||+|++++ +++.+.
T Consensus       453 ~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~-~i~~~g  500 (519)
T KOG1357|consen  453 EMLERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALE-VIDRVG  500 (519)
T ss_pred             HHHhcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHH-HHhhhc
Confidence                     666999999999999999999999999999777 555544

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.41  E-value=8.9e-13  Score=118.31  Aligned_cols=107  Identities=10%  Similarity=0.015  Sum_probs=84.2

Q ss_pred             cCCCCCCCCcccc------cccccchHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCCchHHH-hcc-----
Q psy5049          28 LFQAQTKPPRSHC------ICFISGIRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFFFSKVG-QTS-----   94 (153)
Q Consensus        28 ~~~~~~~p~~~~~------l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~~~~~~-~~a-----   94 (153)
                      .|+.+++|..+..      +...++++++++|++|+++|++.|.+.||.+. +.++||||||.+++...+. .++     
T Consensus       313 i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e  392 (493)
T PRK13580        313 VLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFGLTGRQAESALLD  392 (493)
T ss_pred             ccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence            4666777743322      22223467999999999999999999999864 3478999999999876544 221     


Q ss_pred             -----ccccCCCCCCC---CceEEEEeeC----CCCHHHHHHHHHHHHHHHHh
Q psy5049          95 -----IGLGVEQTALN---DGLSLYESSH----LRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus        95 -----~~i~~PtVP~g---~~RlRI~lsA----~HT~edId~L~~~~L~~~~~  135 (153)
                           ..+++|+||.|   ++||||++++    .|+++||+++++ ++..+.+
T Consensus       393 ~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad-~l~~~l~  444 (493)
T PRK13580        393 AGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAE-LIVKVLS  444 (493)
T ss_pred             CCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHH-HHHHHHH
Confidence                 78899999999   9999999999    888999999999 7765554

>PLN02483 serine palmitoyltransferase

Probab=99.16  E-value=2.9e-10  Score=101.43  Aligned_cols=90  Identities=22%  Similarity=0.309  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA~  116 (153)
                      .++++++++|.++|++.|++.|+.+.+..++|++|+++++..++.+++          .++.||++|.+.+++|||+++.
T Consensus       368 ~~~~~~l~~~~~~l~~~L~~~G~~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~  447 (489)
T PLN02483        368 AQKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISAS  447 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccCCCCCCEEEEEECCHHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCC
Confidence            567899999999999999999998766677899999998766554443          4578999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcC
Q psy5049         117 RSANLWNRPHSPSLMAVFRGG  137 (153)
Q Consensus       117 HT~edId~L~~~~L~~~~~~~  137 (153)
                      ||+|||+++++ +|+++.+..
T Consensus       448 ~t~edId~~l~-~L~~~~~~~  467 (489)
T PLN02483        448 HSREDLIKALE-VISEVGDLV  467 (489)
T ss_pred             CCHHHHHHHHH-HHHHHHHHh
Confidence            99999999998 888776653

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.16  E-value=2.4e-10  Score=98.97  Aligned_cols=106  Identities=9%  Similarity=0.012  Sum_probs=78.9

Q ss_pred             cCCCCCCCCcccc----c-ccccchHHHHHHHHHHHHHHHHHHhCCCc----------ccCCCCCCeEEEEcCCchHHH-
Q psy5049          28 LFQAQTKPPRSHC----I-CFISGIRRISVLAHNTRYFRRKLNRLGLI----------VYGHRDSPVVPVLVFFFSKVG-   91 (153)
Q Consensus        28 ~~~~~~~p~~~~~----l-~~~~~~~rr~~L~~ni~~fr~~L~~~G~~----------~~~~s~SPIiPV~~g~~~~~~-   91 (153)
                      .|+++++|+.+++    + ...+.++++++++++..+|++.|++.++.          +.+.+.+||++|.++++..+. 
T Consensus       237 ~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~  316 (392)
T PLN03227        237 CFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRR  316 (392)
T ss_pred             cccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhh
Confidence            3788888865544    2 22456889999999999999999876543          112457999999998753322 


Q ss_pred             --------hcc----------c------cccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049          92 --------QTS----------I------GLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus        92 --------~~a----------~------~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                              .+.          .      .+++|.||  ..++|+++|+.||+||||++++ +++.+.+.
T Consensus       317 ~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P--~~~iR~~~~~~~t~eei~~~~~-~l~~~~~~  382 (392)
T PLN03227        317 TDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVP--PPCLRVVANASHTREDIDKLLT-VLGEAVEA  382 (392)
T ss_pred             hhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCC--CceEEEEecCCCCHHHHHHHHH-HHHHHHHH
Confidence                    221          1      14578999  4999999999999999999999 88776654

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.15  E-value=3.9e-10  Score=96.71  Aligned_cols=90  Identities=13%  Similarity=0.103  Sum_probs=74.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-----------ccccCCCCCCCCceEEEEee
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS-----------IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a-----------~~i~~PtVP~g~~RlRI~ls  114 (153)
                      .++++++++++..+|++.|++.|+++. .+.++|+||.+++...+.+++           .+++||+||.|..++||+++
T Consensus       297 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~  375 (402)
T TIGR01821       297 SQDLRRAHQENVKRLKNLLEALGIPVI-PNPSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPT  375 (402)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCcC-CCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeC
Confidence            467788999999999999999998764 467999999988643332221           55689999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcC
Q psy5049         115 HLRSANLWNRPHSPSLMAVFRGG  137 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~~~  137 (153)
                      +.||+|||+++++ +|+.+.+..
T Consensus       376 ~~~t~edi~~~~~-~l~~~~~~~  397 (402)
T TIGR01821       376 PAHTDKMIDDLVE-ALLLVWDRL  397 (402)
T ss_pred             CCCCHHHHHHHHH-HHHHHHHHc
Confidence            9999999999999 888776553

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.14  E-value=2.9e-10  Score=97.89  Aligned_cols=93  Identities=15%  Similarity=0.071  Sum_probs=76.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-----------ccccCCCCCCCCceEEEEe
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS-----------IGLGVEQTALNDGLSLYES  113 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a-----------~~i~~PtVP~g~~RlRI~l  113 (153)
                      ...+.+++++++..+|++.|++.|+.+. .++++|+++.++++..+.+++           .++.||+||.|..++||++
T Consensus       297 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~  375 (410)
T PRK13392        297 TSQTERDAHQDRVAALKAKLNANGIPVM-PSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITP  375 (410)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEE
Confidence            4457789999999999999999999874 477899999998653322221           5568999999999999999


Q ss_pred             eCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy5049         114 SHLRSANLWNRPHSPSLMAVFRGGGP  139 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~~~~~~  139 (153)
                      ++.||+||+|++++ +|+.+.+..+-
T Consensus       376 ~~~~t~edid~l~~-aL~~~~~~~~~  400 (410)
T PRK13392        376 TPLHDDEDIDALVA-ALVAIWDRLEL  400 (410)
T ss_pred             CCCCCHHHHHHHHH-HHHHHHHHcCC
Confidence            99999999999999 88887766443

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.09  E-value=9.9e-10  Score=94.58  Aligned_cols=89  Identities=15%  Similarity=0.068  Sum_probs=72.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-----------ccccCCCCCCCCceEEEEee
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS-----------IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a-----------~~i~~PtVP~g~~RlRI~ls  114 (153)
                      ..+.+++++++..+|++.|++.|+.+. .+.++|+||.++++..+.++.           .++.||+||.|..++||+++
T Consensus       297 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~  375 (406)
T PRK13393        297 SSAERERHQDRVARLRARLDKAGIPHL-PNPSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPS  375 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCcC-CCCCCeEEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEEC
Confidence            346678999999999999999998764 577999999987643222221           55689999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhc
Q psy5049         115 HLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~~  136 (153)
                      +.||+||+|++++ +|+.+.+.
T Consensus       376 ~~~t~edid~l~~-~l~~~~~~  396 (406)
T PRK13393        376 PLHTDADIEHLVQ-ALSEIWAR  396 (406)
T ss_pred             CCCCHHHHHHHHH-HHHHHHHh
Confidence            9999999999999 88877654

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.08  E-value=1.3e-09  Score=93.55  Aligned_cols=89  Identities=13%  Similarity=0.131  Sum_probs=72.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-----------ccccCCCCCCCCceEEEEee
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS-----------IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a-----------~~i~~PtVP~g~~RlRI~ls  114 (153)
                      .+..+++++++..+|++.|++.|+.+. .+.++|+|+.+++...+.++.           .++.||+||.|..++||+++
T Consensus       298 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~  376 (407)
T PRK09064        298 SNEERERHQERAAKLKAALDAAGIPVM-PNESHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPT  376 (407)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeC
Confidence            355689999999999999999999874 366899999998643222211           55689999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhc
Q psy5049         115 HLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~~  136 (153)
                      +.||++|++++++ +|+.+.+.
T Consensus       377 ~~~t~edi~~l~~-~l~~~~~~  397 (407)
T PRK09064        377 PFHTDEMIDHLVE-ALVEVWAR  397 (407)
T ss_pred             CCCCHHHHHHHHH-HHHHHHHH
Confidence            9999999999999 88877654

>PLN02822 serine palmitoyltransferase

Probab=99.02  E-value=1.5e-09  Score=96.76  Aligned_cols=111  Identities=16%  Similarity=0.058  Sum_probs=81.4

Q ss_pred             hhcccEEeecCCCCCCCCcccc----ccc-ccchHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCc-----
Q psy5049          19 NRLGLILYVLFQAQTKPPRSHC----ICF-ISGIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFF-----   87 (153)
Q Consensus        19 ~~~g~~~~~~~~~~~~p~~~~~----l~~-~~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~-----   87 (153)
                      ...||+    ||+++||..+..    +.. +..++++++|+++..+|++.|++. |+.+...+.+||+++.+++.     
T Consensus       338 ~~~~~~----fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~  413 (481)
T PLN02822        338 SSSGYV----FSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAK  413 (481)
T ss_pred             cCCcee----eccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCccccc
Confidence            345565    788898874433    222 234789999999999999999986 87765557899999999642     


Q ss_pred             ---hHHHhcc-----------ccccCCCCCCC--CceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049          88 ---SKVGQTS-----------IGLGVEQTALN--DGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus        88 ---~~~~~~a-----------~~i~~PtVP~g--~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                         ....+++           .++.||+++.+  .+.+|+++|+.||++||+++++ +++.+.
T Consensus       414 ~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~-~l~~~~  475 (481)
T PLN02822        414 EDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASE-SLKRVA  475 (481)
T ss_pred             chHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHH-HHHHHH
Confidence               1112222           45578888653  4689999999999999999998 776544

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.00  E-value=1e-09  Score=95.73  Aligned_cols=86  Identities=8%  Similarity=-0.072  Sum_probs=68.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccC-CCCCCeEEEEcCCchHHHh-c----c------cc------ccCCCCCCCCc
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYG-HRDSPVVPVLVFFFSKVGQ-T----S------IG------LGVEQTALNDG  107 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~-~s~SPIiPV~~g~~~~~~~-~----a------~~------i~~PtVP~g~~  107 (153)
                      .+++++++++|+.+|++.|.+.|+.+.. .+++||+||.++++..+.. +    .      ..      +++|+|   .+
T Consensus       284 ~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~---~~  360 (416)
T PRK13034        284 FKTYAKQVIANAQALAEVLKERGYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFV---TS  360 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCC---CC
Confidence            3567999999999999999999998742 2689999999987542211 1    1      22      678887   58


Q ss_pred             eEEEEeeC----CCCHHHHHHHHHHHHHHHHh
Q psy5049         108 LSLYESSH----LRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       108 RlRI~lsA----~HT~edId~L~~~~L~~~~~  135 (153)
                      ++|+++++    .||++||+++++ ++..+..
T Consensus       361 ~lR~~~~~~t~~~~~~~di~~l~~-~l~~~~~  391 (416)
T PRK13034        361 GIRIGTPAGTTRGFGEAEFREIAN-WILDVLD  391 (416)
T ss_pred             eeEeCcHHHHhCCCCHHHHHHHHH-HHHHHHh
Confidence            89999999    999999999999 7776654

>PRK07179 hypothetical protein; Provisional

Probab=98.79  E-value=6.3e-08  Score=83.31  Aligned_cols=93  Identities=16%  Similarity=0.029  Sum_probs=74.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhc---c-------ccccCCCCCCCCceEEEEee
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQT---S-------IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~---a-------~~i~~PtVP~g~~RlRI~ls  114 (153)
                      ..++++++++++..+|++.|.+.|+.+.  +.++|+++.+++...+..+   .       ..+.+|++|.+...+||+++
T Consensus       300 ~~~~~~~~l~~~~~~l~~~L~~~g~~v~--~~~~i~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~  377 (407)
T PRK07179        300 SADDRRARLHANARFLREGLSELGYNIR--SESQIIALETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLN  377 (407)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHcCCCCC--CCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEEC
Confidence            3467899999999999999999998763  5689999988764322222   1       23478999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCCc
Q psy5049         115 HLRSANLWNRPHSPSLMAVFRGGGPG  140 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~~~~~~  140 (153)
                      +.||+|||+++++ +|+.+.+..+.-
T Consensus       378 ~~~t~edi~~~~~-~l~~~~~~~~~~  402 (407)
T PRK07179        378 ADLTASDLDRVLE-VCREARDEVDLW  402 (407)
T ss_pred             CCCCHHHHHHHHH-HHHHHHHhhCCC
Confidence            9999999999999 888777665443

>KOG1358|consensus

Probab=98.75  E-value=1e-08  Score=90.09  Aligned_cols=116  Identities=16%  Similarity=0.080  Sum_probs=87.4

Q ss_pred             HHHHhhhcccEEeecCCCCCCCCcccc-----cccccchHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC-
Q psy5049          14 FRRKLNRLGLILYVLFQAQTKPPRSHC-----ICFISGIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF-   86 (153)
Q Consensus        14 ~~~~l~~~g~~~~~~~~~~~~p~~~~~-----l~~~~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~-   86 (153)
                      -+++|..+||+    |||++||.++..     .+.+..+++.+.|++.+..|...|+.. |+.+.+...|||+.+.+.. 
T Consensus       321 ~hQrLSg~~Y~----fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~  396 (467)
T KOG1358|consen  321 DHQRLSGSGYC----FSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHLQLERS  396 (467)
T ss_pred             eeeecccccee----eeccCchhhhhhHHHHHHHHhhCcchhhhhhccccccchhhhcCCceEEecCcCCceeeeeeccc
Confidence            36899999999    999999998877     333466889999999999999999965 5677778889999999876 


Q ss_pred             ----chHHHh---cc--------------ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049          87 ----FSKVGQ---TS--------------IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus        87 ----~~~~~~---~a--------------~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                          ++....   ++              ..-..-.+|. .+-+|||+++.||+|||+++++ +++.+..
T Consensus       397 ~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~-~pSiri~~~a~~seeel~ra~~-~ik~~~~  464 (467)
T KOG1358|consen  397 YGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPI-PPSIRICVSAGMSEEELERAAE-LIKEVAS  464 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCC-CCcEEEEEeCCCCHHHHHHHHH-HHHHHHH
Confidence                211111   11              1112223332 3579999999999999999998 8877654

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=98.73  E-value=1.4e-07  Score=80.16  Aligned_cols=89  Identities=18%  Similarity=0.234  Sum_probs=71.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      .++.+++++++..++++.|.+.|+.+. .+.+|++++.+.+.....++.          ....||++|.+..++||+++.
T Consensus       291 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~i~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~  369 (393)
T TIGR01822       291 SNELRDRLWANTRYFRERMEAAGFDIK-PADHPIIPVMLYDAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISA  369 (393)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECC
Confidence            467899999999999999998898764 356899998877633232222          445689889999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc
Q psy5049         116 LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~~  136 (153)
                      .||++||+++++ +|+.+.+.
T Consensus       370 ~~t~edi~~~~~-~l~~~~~~  389 (393)
T TIGR01822       370 AHTEEQLDRAVE-AFTRIGRE  389 (393)
T ss_pred             CCCHHHHHHHHH-HHHHHHHH
Confidence            999999999999 88776543

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>KOG1357|consensus

Probab=98.53  E-value=5.6e-08  Score=86.62  Aligned_cols=38  Identities=34%  Similarity=0.531  Sum_probs=35.4

Q ss_pred             ChHHHHHHHhHHHHHHHhhhcccEEeecCCCCCCCCcc
Q psy5049           1 IRLISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRS   38 (153)
Q Consensus         1 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~   38 (153)
                      +|++.+|++||+|||.+|+++||++||+.||+++|++-
T Consensus       404 ~~k~~~l~~ns~yfr~~l~~~gfivyG~~dSpVvplll  441 (519)
T KOG1357|consen  404 RQKIERLAENSRYFRWELQKMGFIVYGNNDSPVVPLLL  441 (519)
T ss_pred             HHHHHHHHhhhHHHHHhhhcCcEEEecCCCCCcceeee
Confidence            47999999999999999999999999999999999743

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=98.26  E-value=1.3e-05  Score=67.68  Aligned_cols=89  Identities=15%  Similarity=0.125  Sum_probs=68.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      ..+.+++++++..++++.|.+.|+.+. .+.+|++++.++.......+.          .+..||..|.|..++|++++.
T Consensus       283 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~  361 (385)
T TIGR01825       283 SPELMERLWDNTRFFKAGLGKLGYDTG-GSETPITPVVIGDEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTA  361 (385)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCEEEEEECCHHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcC
Confidence            356889999999999999999998764 466789998876532222221          334577778888999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc
Q psy5049         116 LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~~  136 (153)
                      .+|+|||+++++ +++.+.+.
T Consensus       362 ~~~~e~i~~~~~-~l~~~~~~  381 (385)
T TIGR01825       362 EHTKDDLDQALD-AYEKVGKE  381 (385)
T ss_pred             CCCHHHHHHHHH-HHHHHHHH
Confidence            999999999998 77766543

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=98.17  E-value=2.5e-05  Score=65.90  Aligned_cols=89  Identities=17%  Similarity=0.199  Sum_probs=67.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      ..+.+++++++..++++.|.+.|+.+. .+.++++++.+++.....++.          .+..||..+.+..++|++++.
T Consensus       295 ~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~  373 (397)
T PRK06939        295 SDELRDRLWENARYFREGMTAAGFTLG-PGEHPIIPVMLGDAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSA  373 (397)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCcC-CCCCCEEEEEECCHHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECC
Confidence            367899999999999999999988653 356788877765432222221          333577777778899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc
Q psy5049         116 LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~~  136 (153)
                      .+|++||+++++ .|+.+.+.
T Consensus       374 ~~~~~~i~~~l~-~L~~~~~~  393 (397)
T PRK06939        374 AHTKEQLDRAID-AFEKVGKE  393 (397)
T ss_pred             CCCHHHHHHHHH-HHHHHHHH
Confidence            999999999999 88776554

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=97.88  E-value=8.7e-05  Score=63.32  Aligned_cols=85  Identities=12%  Similarity=0.023  Sum_probs=59.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCch--HHHhcc-------ccccCCCCCCCCceEEEEeeC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFS--KVGQTS-------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~--~~~~~a-------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      .+.+.+++++++.++|++.|...+       .++++|+.+.+..  ......       ..+.+|++    +.+||++++
T Consensus       262 ~~~~~~~~l~~l~~~l~~~l~~~~-------~~~~~~i~~~~~~~~~~~~~L~~~gi~v~~~~~~~~----~~iRis~~~  330 (370)
T PRK05937        262 EGELARKQLFRLKEYFAQKFSSAA-------PGCVQPIFLPGISEQELYSKLVETGIRVGVVCFPTG----PFLRVNLHA  330 (370)
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCC-------CCCEEEEEeCChhHHHHHHHHHHCCeeEEeeCCCCC----CEEEEEcCC
Confidence            446688999999999998875422       2457788876432  122111       33356653    479999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCce
Q psy5049         116 LRSANLWNRPHSPSLMAVFRGGGPGI  141 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~~~~~~~  141 (153)
                      .||+||||++++ +|+.+.+..+-++
T Consensus       331 ~~t~edid~l~~-~L~~~~~~~~~~~  355 (370)
T PRK05937        331 FNTEDEVDILVS-VLATYLEKYQKNV  355 (370)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHhCCCc
Confidence            999999999999 8887776665554

>PRK02948 cysteine desulfurase; Provisional

Probab=97.86  E-value=5.5e-05  Score=64.18  Aligned_cols=91  Identities=9%  Similarity=0.026  Sum_probs=61.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCC-CCCCeEEEE----cC--CchHHHhcc----c----------cccCCC--
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGH-RDSPVVPVL----VF--FFSKVGQTS----I----------GLGVEQ--  101 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~-s~SPIiPV~----~g--~~~~~~~~a----~----------~i~~Pt--  101 (153)
                      ..++.+++++++..++++.|+++|+.+... +.++++|.+    +.  +.++.....    +          .+.+|+  
T Consensus       254 ~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~  333 (381)
T PRK02948        254 NMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKT  333 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHH
Confidence            346778999999999999999998754322 133444433    22  222222221    1          133443  


Q ss_pred             -------CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         102 -------TALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       102 -------VP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                             +|.+.+.+||+++..||+||+|++++ +|+.+.+.
T Consensus       334 ~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~-~l~~~~~~  374 (381)
T PRK02948        334 MLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIH-ALETIGNQ  374 (381)
T ss_pred             HHHcCCChHHhCceEEEEcCCCCCHHHHHHHHH-HHHHHHHH
Confidence                   45567899999999999999999999 88776544

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=97.82  E-value=0.00024  Score=59.54  Aligned_cols=84  Identities=14%  Similarity=0.058  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA~  116 (153)
                      +++++++.++..++.+.|++.|+.+. .+.++++.+.+.+.....++.          .+..+|.+|.|...+||+++..
T Consensus       290 ~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~  368 (385)
T PRK05958        290 PERRERLAALIARLRAGLRALGFQLM-DSQSAIQPLIVGDNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAA  368 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCC
Confidence            67899999999999999999988763 466788888876532222222          2225566777778999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy5049         117 RSANLWNRPHSPSLMA  132 (153)
Q Consensus       117 HT~edId~L~~~~L~~  132 (153)
                      +|++|++++++ .|+.
T Consensus       369 ~~~~~i~~~l~-~l~~  383 (385)
T PRK05958        369 HTEADIDRLLE-ALAE  383 (385)
T ss_pred             CCHHHHHHHHH-HHHh
Confidence            99999999888 6654

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=97.81  E-value=0.00019  Score=59.36  Aligned_cols=83  Identities=16%  Similarity=0.080  Sum_probs=62.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      .++.++++.++..++.+.|.+.|+.+. .+.++++.+.++......++.          .+..+|..+.|...+||+++.
T Consensus       267 ~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~  345 (360)
T TIGR00858       267 EPWRREKLLALIARLRAGLEALGFTLM-PSCTPIVPVIIGDNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSA  345 (360)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCccC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcC
Confidence            367899999999999999999988664 456788888886532222222          222566667677789999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSL  130 (153)
Q Consensus       116 ~HT~edId~L~~~~L  130 (153)
                      .||++|++++++ +|
T Consensus       346 ~~~~~~i~~~l~-~l  359 (360)
T TIGR00858       346 AHTPGDIDRLAE-AL  359 (360)
T ss_pred             CCCHHHHHHHHH-hh
Confidence            999999999887 54

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=97.80  E-value=7.7e-05  Score=63.41  Aligned_cols=80  Identities=19%  Similarity=0.124  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCC-CcccCC----CCCCeEEEEcCCc--hHHHhcc----c-----------cccCCCCCCC
Q psy5049          48 RRISVLAHNTRYFRRKLNRLG-LIVYGH----RDSPVVPVLVFFF--SKVGQTS----I-----------GLGVEQTALN  105 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~G-~~~~~~----s~SPIiPV~~g~~--~~~~~~a----~-----------~i~~PtVP~g  105 (153)
                      ..+++..+...++++.|.+.+ +.+.+.    ..+||+++.+.+.  ....+..    +           .+++|.+|.+
T Consensus       294 ~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~  373 (397)
T TIGR01976       294 AIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDE  373 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCcCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCC
Confidence            345666778889999998876 655432    2588998877542  2222221    1           1245788877


Q ss_pred             CceEEEEeeCCCCHHHHHHHHH
Q psy5049         106 DGLSLYESSHLRSANLWNRPHS  127 (153)
Q Consensus       106 ~~RlRI~lsA~HT~edId~L~~  127 (153)
                      ...+||+++..+|++|++++++
T Consensus       374 ~~~iRis~~~~~t~~di~~l~~  395 (397)
T TIGR01976       374 GGVVRVGLAHYNTAEEVDRLLE  395 (397)
T ss_pred             CCeEEEEeeccCCHHHHHHHHH
Confidence            7899999999999999999887

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK07505 hypothetical protein; Provisional

Probab=97.76  E-value=0.00031  Score=60.53  Aligned_cols=86  Identities=9%  Similarity=-0.120  Sum_probs=60.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      ..+++++|+++..++...+...   +. ....+|.++.+++...+.++.          .+..||++|.+...+||++++
T Consensus       304 ~~~~~~~l~~~~~~~~~~~~~~---~~-g~~~~i~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~  379 (402)
T PRK07505        304 LDQLQQKLQNNIALFDSLIPTE---QS-GSFLPIRLIYIGDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRA  379 (402)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhc---CC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCc
Confidence            3567788888888776654332   11 244788777766532222221          344788889888899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc
Q psy5049         116 LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~~  136 (153)
                      .||+||++++++ +|+.+.+.
T Consensus       380 ~~t~eei~~~~~-~l~~~l~~  399 (402)
T PRK07505        380 SHTNDEIKRLCS-LLKEILDE  399 (402)
T ss_pred             cCCHHHHHHHHH-HHHHHHHh
Confidence            999999999999 88766543

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=97.70  E-value=0.00033  Score=58.81  Aligned_cols=84  Identities=15%  Similarity=-0.001  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc--ccccCCCCCCCCceEEEEeeCCCCHHHHHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS--IGLGVEQTALNDGLSLYESSHLRSANLWNR  124 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~HT~edId~  124 (153)
                      +++++++.++.+++++.|++.|+.....+.++++.+.+.+.....+..  ..|.-... .+...+||+++..+|++|+|+
T Consensus       287 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~-~~~~~iRis~~~~~t~edid~  365 (373)
T TIGR03812       287 RKIVAECMENTRYLVEELKKIGFEPVIEPVLNIVAFEVDDPEEVRKKLRDRGWYVSVT-RCPKALRIVVMPHVTREHIEE  365 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeEEcCCCceEEEEEeCCHHHHHHHHHHCCceeccC-CCCCEEEEEEECCCCHHHHHH
Confidence            567899999999999999999985433456788887766544333322  22211111 134689999999999999999


Q ss_pred             HHHHHHHH
Q psy5049         125 PHSPSLMA  132 (153)
Q Consensus       125 L~~~~L~~  132 (153)
                      +++ +|+.
T Consensus       366 l~~-~L~~  372 (373)
T TIGR03812       366 FLE-DLKE  372 (373)
T ss_pred             HHH-HHhh
Confidence            988 7654

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=97.67  E-value=0.0002  Score=63.10  Aligned_cols=91  Identities=11%  Similarity=0.005  Sum_probs=65.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCC-CCCCeEEEEcCCch----HHHhcc----ccccCCCCCCCC-----ceEE
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGH-RDSPVVPVLVFFFS----KVGQTS----IGLGVEQTALND-----GLSL  110 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~-s~SPIiPV~~g~~~----~~~~~a----~~i~~PtVP~g~-----~RlR  110 (153)
                      ..++.++++++++.+|.+.|.+.|+.+.+. +++++++|.+....    .+....    +.+..+++|.+.     +.+|
T Consensus       300 ~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vR  379 (452)
T PTZ00094        300 EWKEYAKQVLKNAKALAAALEKRGYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVR  379 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEE
Confidence            446789999999999999999889876432 34677777665432    222222    334466666543     7899


Q ss_pred             EEe----eCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         111 YES----SHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       111 I~l----sA~HT~edId~L~~~~L~~~~~~  136 (153)
                      ++.    ++.|+++||+++++ +|..+...
T Consensus       380 is~~~~tt~g~~~~di~~l~~-~l~~~~~~  408 (452)
T PTZ00094        380 LGTPALTTRGAKEKDFKFVAD-FLDRAVKL  408 (452)
T ss_pred             ECCHHHHhCCCCHHHHHHHHH-HHHHHHHH
Confidence            999    77777999999999 77766553

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=97.63  E-value=0.0003  Score=60.49  Aligned_cols=100  Identities=9%  Similarity=-0.035  Sum_probs=61.9

Q ss_pred             HHHHHhHHHHHHHhhhc-ccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE
Q psy5049           5 SVLAQNTRYFRRKLNRL-GLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL   83 (153)
Q Consensus         5 ~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~   83 (153)
                      ++..+|++||+++|.++ ||.++++..+ -+|+.  .+..................|.+.|.+.|+.             
T Consensus       283 ~~~~~~~~~l~~~L~~l~g~~~~~~~~~-~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~-------------  346 (387)
T PRK09331        283 DEEVKKARWFVDELEKIEGFKQLGEKPR-NHDLM--KFETPSFDEIAKKHKRRGFFLYEELKKRGIH-------------  346 (387)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEeccCcC-cCCeE--EEeCCchhHHhhhccccchhHHHHHHHcCce-------------
Confidence            45568999999999999 9999874221 23321  0111100000111112234466666666542             


Q ss_pred             cCCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhcCC
Q psy5049          84 VFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGG  138 (153)
Q Consensus        84 ~g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~~~  138 (153)
                                       .++.|.+++|.+.+..||++|++++++ +|+.+.+..+
T Consensus       347 -----------------~~~~~~~~i~ri~~~g~t~~di~~l~~-aL~~i~~~~~  383 (387)
T PRK09331        347 -----------------GIKPGATKEFKLSTYGLTWEQVEYVAD-AFKEIAEKYG  383 (387)
T ss_pred             -----------------EEccCCceEEEEEeccCCHHHHHHHHH-HHHHHHHhcC
Confidence                             123456888888898899999999999 8887766543

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=97.60  E-value=0.00031  Score=58.24  Aligned_cols=87  Identities=7%  Similarity=-0.051  Sum_probs=60.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCc----h---HHHhcc----ccccCCCCCCCCceEEEE
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFF----S---KVGQTS----IGLGVEQTALNDGLSLYE  112 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~----~---~~~~~a----~~i~~PtVP~g~~RlRI~  112 (153)
                      ..+++++++.++.+++.+.|.+. |+.+.+.++++++.+.+.+.    .   ...+..    ..+..+....+...+|++
T Consensus       245 g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis  324 (345)
T cd06450         245 GYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFV  324 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEE
Confidence            44788899999999999999877 56554446789998887652    1   222211    122222222256899999


Q ss_pred             eeCCC-CHHHHHHHHHHHHHH
Q psy5049         113 SSHLR-SANLWNRPHSPSLMA  132 (153)
Q Consensus       113 lsA~H-T~edId~L~~~~L~~  132 (153)
                      ++..| |+||+|++++ +|+.
T Consensus       325 ~~~~~~t~~di~~l~~-~l~~  344 (345)
T cd06450         325 VTNPLTTRDDADALLE-DIER  344 (345)
T ss_pred             ecCCCCCHHHHHHHHH-HHHh
Confidence            99987 9999999998 6653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=97.58  E-value=0.00056  Score=58.33  Aligned_cols=92  Identities=9%  Similarity=-0.048  Sum_probs=67.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCCc----hHHHhcc-------ccccCCCCC---CCCceE
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFFF----SKVGQTS-------IGLGVEQTA---LNDGLS  109 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~~----~~~~~~a-------~~i~~PtVP---~g~~Rl  109 (153)
                      ..+++++++.++..++++.|.+.|+.+. ....++.+.+.+.+.    ....+..       ..+.+|+++   .+...+
T Consensus       276 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~l  355 (402)
T cd00378         276 EFKAYAKQVVENAKALAEALKERGFKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGI  355 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCeEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCee
Confidence            3467889999999999999999998763 224588888887631    2222222       345678875   356899


Q ss_pred             EEEeeC----CCCHHHHHHHHHHHHHHHHhcC
Q psy5049         110 LYESSH----LRSANLWNRPHSPSLMAVFRGG  137 (153)
Q Consensus       110 RI~lsA----~HT~edId~L~~~~L~~~~~~~  137 (153)
                      |++.+.    .|+++||+++++ .++.+.+..
T Consensus       356 Ri~~~~~~~~~~~~~di~~~~~-~l~~~~~~~  386 (402)
T cd00378         356 RIGTPAMTTRGMGEEEMEEIAD-FIARALKDA  386 (402)
T ss_pred             EecCHHHHHhCCCHHHHHHHHH-HHHHHHhcc
Confidence            999988    578999999999 888766554

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=97.55  E-value=0.0011  Score=54.79  Aligned_cols=86  Identities=22%  Similarity=0.173  Sum_probs=59.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      ...+++++.++..++++.|.+.|+...+.+.+.+..+.+.+.....++.          ....|++.+.+...+|++++.
T Consensus       252 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~  331 (349)
T cd06454         252 GPERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSA  331 (349)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcEEEEeCCChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeC
Confidence            4678899999999999999999887654334444444443222222221          222455555667899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLMA  132 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~  132 (153)
                      .+|++|++++++ +++.
T Consensus       332 ~~~~~~i~~~~~-~l~~  347 (349)
T cd06454         332 AHTKEDIDRLLE-ALKE  347 (349)
T ss_pred             CCCHHHHHHHHH-HHHH
Confidence            999999999888 6654

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=97.52  E-value=0.0011  Score=55.46  Aligned_cols=86  Identities=14%  Similarity=-0.043  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc--ccccCCCCCCCCceEEEEeeCCCCHHHHHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS--IGLGVEQTALNDGLSLYESSHLRSANLWNR  124 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~HT~edId~  124 (153)
                      .++++++.++..+|++.|.+.|+.+...+..+++.+-+.+.....+..  ..|.-..+ .+...+||+++..+|+|||++
T Consensus       282 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~-~~~~~iRis~~~~~t~edi~~  360 (371)
T PRK13520        282 RKVVERCMENTRWLAEELKERGFEPVIEPVLNIVAFDDPNPDEVREKLRERGWRVSVT-RCPEALRIVCMPHVTREHIEN  360 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEecCCCceEEEEecCCHHHHHHHHHHCCceeccC-CCCCEEEEEEECCCCHHHHHH
Confidence            568899999999999999999987323445677666655444333322  22211111 123579999999999999999


Q ss_pred             HHHHHHHHHH
Q psy5049         125 PHSPSLMAVF  134 (153)
Q Consensus       125 L~~~~L~~~~  134 (153)
                      +++ +|+.+.
T Consensus       361 ~~~-~l~~~~  369 (371)
T PRK13520        361 FLE-DLKEVK  369 (371)
T ss_pred             HHH-HHHHHh
Confidence            998 777653

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=97.50  E-value=0.00025  Score=63.61  Aligned_cols=87  Identities=11%  Similarity=-0.042  Sum_probs=63.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCC-CCCCeEEEEcC----CchHHHh---cc-------------ccccCCCCC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGH-RDSPVVPVLVF----FFSKVGQ---TS-------------IGLGVEQTA  103 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~-s~SPIiPV~~g----~~~~~~~---~a-------------~~i~~PtVP  103 (153)
                      ..++.++++++|+.+|++.|.+.|+.+.+. ++++++-|-+.    +..++..   .+             .++++|+|+
T Consensus       311 ~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giR  390 (475)
T PLN03226        311 EFKAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVR  390 (475)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcc
Confidence            346689999999999999999999987532 45777644331    1222222   22             356889999


Q ss_pred             CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         104 LNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       104 ~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      .|++++   .+..|+++|++++++ .+..+.+
T Consensus       391 iGt~~l---t~~g~~~~d~~~ia~-~i~~~~~  418 (475)
T PLN03226        391 IGTPAM---TSRGLVEKDFEKVAE-FLHRAVT  418 (475)
T ss_pred             cCcHHH---HHCCCCHHHHHHHHH-HHHHHHH
Confidence            999988   999999999999998 7765554

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=97.49  E-value=0.00068  Score=57.53  Aligned_cols=81  Identities=10%  Similarity=0.005  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCC--chHHHhcc-----ccc-cCCCCCCCCceEEEEeeCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFF--FSKVGQTS-----IGL-GVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~--~~~~~~~a-----~~i-~~PtVP~g~~RlRI~lsA~H  117 (153)
                      ++.+++++++..++++.|++.+.... .....+++.+-+..  .....+++     ..+ .++..|.+.+++|++++..|
T Consensus       307 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~~~  386 (398)
T cd00613         307 KEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETE  386 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCccccccccCCCCeEEEEcCCCC
Confidence            56789999999999999999876531 11223444444442  12222222     233 22223557789999999999


Q ss_pred             CHHHHHHHHH
Q psy5049         118 SANLWNRPHS  127 (153)
Q Consensus       118 T~edId~L~~  127 (153)
                      |+||||++++
T Consensus       387 t~edid~~~~  396 (398)
T cd00613         387 TKEELDALLE  396 (398)
T ss_pred             CHHHHHHHHH
Confidence            9999999887

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=97.48  E-value=0.0012  Score=55.64  Aligned_cols=87  Identities=10%  Similarity=-0.097  Sum_probs=60.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCC--CCCCeEEEEcCCc------hHHHhcc---ccccCCCCCCCCceEEEEee
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGH--RDSPVVPVLVFFF------SKVGQTS---IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~--s~SPIiPV~~g~~------~~~~~~a---~~i~~PtVP~g~~RlRI~ls  114 (153)
                      .++++++++++..++++.|.+.|+.+...  ..+|++..+...+      ....+..   ..+..|....+...+||+.+
T Consensus       262 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~  341 (363)
T TIGR02326       262 VAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNI  341 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecC
Confidence            35688999999999999999999876432  2477665444332      2222222   23344554445578999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy5049         115 HLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~  133 (153)
                      ..+|.||++++++ +|+.+
T Consensus       342 ~~~~~edv~~~l~-~l~~~  359 (363)
T TIGR02326       342 GEVDAADITRLLT-AIGKA  359 (363)
T ss_pred             CCCCHHHHHHHHH-HHHHH
Confidence            9999999999998 77664

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=97.40  E-value=0.00085  Score=57.25  Aligned_cols=80  Identities=13%  Similarity=0.057  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHhCCCccc--CCCCCCeEEEEc--------CCchHHHhcc-------c-cccCCCCCCCCceEEE
Q psy5049          50 ISVLAHNTRYFRRKLNRLGLIVY--GHRDSPVVPVLV--------FFFSKVGQTS-------I-GLGVEQTALNDGLSLY  111 (153)
Q Consensus        50 r~~L~~ni~~fr~~L~~~G~~~~--~~s~SPIiPV~~--------g~~~~~~~~a-------~-~i~~PtVP~g~~RlRI  111 (153)
                      ..+..++.++|++.|+++|+.+.  ..+.++|+-+-+        ++...+..+.       + +++++    ...++||
T Consensus       270 ~~~~~~~~~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~----~~~~iRi  345 (370)
T TIGR02539       270 WDEEVKKTRWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRSG----QTKYFKL  345 (370)
T ss_pred             HHHHHHHHHHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccCC----cceEEEE
Confidence            34456778899999999998752  246788883332        2222222222       3 24432    2469999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         112 ESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +++ .||+||++++++ +|+.+.+
T Consensus       346 s~~-~~t~e~i~~l~~-~L~~~~~  367 (370)
T TIGR02539       346 SVY-GLTKEQVEYVVD-SFEEIVE  367 (370)
T ss_pred             Eec-CCCHHHHHHHHH-HHHHHHH
Confidence            994 799999999999 8876654

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=97.13  E-value=0.0014  Score=54.78  Aligned_cols=78  Identities=10%  Similarity=-0.041  Sum_probs=59.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-----------ccccCCCCCCCCceEEEEe
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS-----------IGLGVEQTALNDGLSLYES  113 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a-----------~~i~~PtVP~g~~RlRI~l  113 (153)
                      .-.+++++++++..++.+.|.+.|+.+.. +.++++.+...+.....++.           .+..+|.+   ...+||++
T Consensus       273 ~~~~~~~~l~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~---~~~iRi~~  348 (363)
T PF00155_consen  273 WLEELRERLRENRDLLREALEEIGITVLP-PEAGFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGV---PGYIRISL  348 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSEEEH-HSBSSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTS---TTEEEEEG
T ss_pred             ccccchhhHHHHHHHHHHHHHHhhhheee-ccCccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCC---CCEEEEEe
Confidence            34778999999999999999999998754 45788877776654222221           44456665   67899999


Q ss_pred             eCCCCHHHHHHHHH
Q psy5049         114 SHLRSANLWNRPHS  127 (153)
Q Consensus       114 sA~HT~edId~L~~  127 (153)
                       |.+++|+++++++
T Consensus       349 -a~~~~e~~~~~~~  361 (363)
T PF00155_consen  349 -ASHSEEDLEEALE  361 (363)
T ss_dssp             -GCSCHHHHHHHHH
T ss_pred             -ccCCHHHHHHHHh
Confidence             9999999999877

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=97.12  E-value=0.0039  Score=52.11  Aligned_cols=87  Identities=17%  Similarity=0.008  Sum_probs=56.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCeE-EEEcCCc---hHHHhcc--c-cc-cCCC-CCCCCceEEEEee
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHR--DSPVV-PVLVFFF---SKVGQTS--I-GL-GVEQ-TALNDGLSLYESS  114 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s--~SPIi-PV~~g~~---~~~~~~a--~-~i-~~Pt-VP~g~~RlRI~ls  114 (153)
                      .++.+++..++..++++.|.+.|+.+.+.+  .++++ .+.+.+.   ....+..  . .| .-|. .+.....+|++++
T Consensus       257 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~  336 (356)
T cd06451         257 LENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHM  336 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEecccccccCCEEEEecC
Confidence            367788889999999999999898664322  24554 3444332   2222111  1 22 1111 1222359999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy5049         115 HLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~  133 (153)
                      ..||+|||+++++ +|+.+
T Consensus       337 ~~~~~e~v~~~~~-~l~~~  354 (356)
T cd06451         337 GEATREDVLGVLS-ALEEA  354 (356)
T ss_pred             CCCCHHHHHHHHH-HHHHH
Confidence            9999999999998 77664

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=97.10  E-value=0.006  Score=51.42  Aligned_cols=91  Identities=13%  Similarity=-0.081  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCe-EEEEcCCc-----hHHHhcc---ccccCCCCCCCCceEEEEeeC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHR--DSPV-VPVLVFFF-----SKVGQTS---IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s--~SPI-iPV~~g~~-----~~~~~~a---~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      +++++++.++..++++.|.+.|+.+...+  .+|+ +.+.+...     ....+..   ..+.+|........+|++...
T Consensus       264 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~  343 (368)
T PRK13479        264 PARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIG  343 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCC
Confidence            67778999999999999999998764322  3565 44443322     2222222   233345433334679999988


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCC
Q psy5049         116 LRSANLWNRPHSPSLMAVFRGGG  138 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~~~~  138 (153)
                      .+|+||++++++ +|+.+.+..|
T Consensus       344 ~~t~edi~~~l~-~L~~~l~~~~  365 (368)
T PRK13479        344 DVDAADIRRLVA-AIAEALYWMG  365 (368)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHcC
Confidence            999999999999 8887766544

>PRK07678 aminotransferase; Validated

Probab=97.01  E-value=0.0037  Score=55.46  Aligned_cols=90  Identities=13%  Similarity=0.014  Sum_probs=62.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCC---------chHHHhcc---------ccccCCCC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFF---------FSKVGQTS---------IGLGVEQT  102 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~---------~~~~~~~a---------~~i~~PtV  102 (153)
                      +.+.+.+++++...+|++.|++.    ++.....+...++.|.+..         .+.+..+.         ....+|+|
T Consensus       337 ~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v  416 (451)
T PRK07678        337 ENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTV  416 (451)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccc
Confidence            44578899999999999999643    3211112445677777732         12233322         22357889


Q ss_pred             CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         103 ALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       103 P~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      |.+...+|++....||++|||++++ +++...+
T Consensus       417 ~~~~~~lrl~Ppl~it~~eid~~~~-~l~~~l~  448 (451)
T PRK07678        417 AGYNNVLTLSPPLVISSEEIAFIVG-TLKTALE  448 (451)
T ss_pred             cCCCCEEEEECCCcCCHHHHHHHHH-HHHHHHH
Confidence            9888999999999999999999998 7765543

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=96.98  E-value=0.0057  Score=52.64  Aligned_cols=88  Identities=10%  Similarity=-0.004  Sum_probs=59.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccC-CCCCCeEEEEcCCc----hHHHhcc----cccc------CCCCCCCCceEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYG-HRDSPVVPVLVFFF----SKVGQTS----IGLG------VEQTALNDGLSLY  111 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~-~s~SPIiPV~~g~~----~~~~~~a----~~i~------~PtVP~g~~RlRI  111 (153)
                      +++++++.++..++++.|.+.|+.+.. .+.++++++.+++.    ....+..    +.+.      .+..|.....+|+
T Consensus       282 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri  361 (416)
T PRK00011        282 KEYAQQVVKNAKALAEALAERGFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRI  361 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEe
Confidence            778999999999999999999986532 24568999988632    2222222    2221      1122333456999


Q ss_pred             EeeC----CCCHHHHHHHHHHHHHHHHh
Q psy5049         112 ESSH----LRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       112 ~lsA----~HT~edId~L~~~~L~~~~~  135 (153)
                      +.++    .+|++|++++++ +++.+..
T Consensus       362 ~~~~~~~~~~t~~di~~l~~-~l~~~~~  388 (416)
T PRK00011        362 GTPAITTRGFKEAEMKEIAE-LIADVLD  388 (416)
T ss_pred             cCHHHhhcCcCHHHHHHHHH-HHHHHHh
Confidence            6533    788999999999 8877644

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=96.92  E-value=0.0066  Score=50.07  Aligned_cols=81  Identities=16%  Similarity=0.044  Sum_probs=58.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC-chHHHhcc--------cc-ccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF-FSKVGQTS--------IG-LGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~-~~~~~~~a--------~~-i~~PtVP~g~~RlRI~lsA  115 (153)
                      ..++++++.++..+|.+.|.+.|+.+. .+.++++.|.... ......+.        .. +.+|.   +...+||+++.
T Consensus       246 ~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~~---~~~~lRi~~~~  321 (338)
T cd06502         246 WLRRLRHDHEMARRLAEALEELGGLES-EVQTNIVLLDPVEANAVFVELSKEAIERRGEGVLFYAW---GEGGVRFVTHW  321 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcc-cccCCeEEEecCCccHHHHHHHHHHHHhhhCCEEEEec---CCCeEEEEeec
Confidence            456779999999999999999998653 4668888887743 22222221        12 23333   23789999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLM  131 (153)
Q Consensus       116 ~HT~edId~L~~~~L~  131 (153)
                      .||++|++++++ +++
T Consensus       322 ~~~~~~i~~~~~-~l~  336 (338)
T cd06502         322 DTTEEDVDELLS-ALK  336 (338)
T ss_pred             CCCHHHHHHHHH-HHh
Confidence            999999999887 654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=96.91  E-value=0.0044  Score=53.37  Aligned_cols=84  Identities=8%  Similarity=0.022  Sum_probs=60.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccC--CCCCCeEEEEcCCch---HHHhcc-----ccc-cCCCCCCCCceEEEEee
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYG--HRDSPVVPVLVFFFS---KVGQTS-----IGL-GVEQTALNDGLSLYESS  114 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~--~s~SPIiPV~~g~~~---~~~~~a-----~~i-~~PtVP~g~~RlRI~ls  114 (153)
                      .++++++++++..+|++.|++.+..+..  .+..++++|.+.++.   .+.++.     ..+ ..|   .+...+||+.+
T Consensus       305 ~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~---~~~~~lRi~p~  381 (401)
T TIGR01885       305 EEKLAENAEKLGEIFRDQLKKLPKPIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKP---THGNIIRLAPP  381 (401)
T ss_pred             hccHHHHHHHHHHHHHHHHHhccCCceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEe---cCCCEEEEeCC
Confidence            3468899999999999999988654321  245678888886642   333332     222 333   34679999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy5049         115 HLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~  133 (153)
                      ..||++||+++++ +++..
T Consensus       382 l~~t~~~i~~~l~-~l~~~  399 (401)
T TIGR01885       382 LVITEEQLDEGLE-IIKKV  399 (401)
T ss_pred             ccCCHHHHHHHHH-HHHHH
Confidence            9999999999888 77654

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=96.85  E-value=0.0089  Score=51.13  Aligned_cols=88  Identities=13%  Similarity=0.024  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC--chHHHhcc----ccccC---CCCC----CC-CceEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF--FSKVGQTS----IGLGV---EQTA----LN-DGLSLY  111 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~--~~~~~~~a----~~i~~---PtVP----~g-~~RlRI  111 (153)
                      .+.+++..++..++++.|++. |+.+...+.++|+.+-+.+  .....+..    +.++.   ++.+    .| .+.+||
T Consensus       295 ~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRi  374 (401)
T PRK10874        295 NQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRA  374 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEE
Confidence            345778888889999999876 7765444567788776643  22232222    22221   2211    11 368999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         112 ESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      |++..+|++|||++++ +|+.+.+
T Consensus       375 S~~~~nt~edid~ll~-al~~~~~  397 (401)
T PRK10874        375 SFAPYNTQSDVDALVN-AVDRALE  397 (401)
T ss_pred             EecccCCHHHHHHHHH-HHHHHHH
Confidence            9999999999999999 8876544

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=96.83  E-value=0.0055  Score=53.39  Aligned_cols=87  Identities=15%  Similarity=0.121  Sum_probs=61.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc--hHHHhcc--c---cccCCCCCCCCceEEEEe
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF--SKVGQTS--I---GLGVEQTALNDGLSLYES  113 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~--~~~~~~a--~---~i~~PtVP~g~~RlRI~l  113 (153)
                      +.++++++++++..+|++.|++.    ++.. ..+.+++++|.+.++  ..+...+  .   .+.-.  +.+...+||++
T Consensus       295 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~i~~-vrG~Glm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~--~~~~~~lR~~p  371 (395)
T PRK03715        295 LAPGFLEGVRARGEYLKEKLLELSEERGLEG-ERGEGLLRALLLGKDIGPQIVEKARDMQPDGLLLN--APRPNLLRFMP  371 (395)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHhhcCCcCe-EEcceeEEEEEecCchHHHHHHHHHhccCCCEEEe--ecCCCEEEEeC
Confidence            45779999999999999999854    4321 135689999999874  2233222  1   22211  11336899999


Q ss_pred             eCCCCHHHHHHHHHHHHHHHHh
Q psy5049         114 SHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~~  135 (153)
                      +..||++|||++++ ++++..+
T Consensus       372 ~l~~t~~ei~~~~~-~l~~~l~  392 (395)
T PRK03715        372 ALNVTTEEIDQMIA-MLRSVLD  392 (395)
T ss_pred             CcccCHHHHHHHHH-HHHHHHH
Confidence            99999999999998 7766543

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=96.80  E-value=0.0062  Score=51.83  Aligned_cols=82  Identities=9%  Similarity=-0.049  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCC--ccc--CCCCCCeEEEEcCCc--------hHHHhcc------ccccCCCCCCCCce
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGL--IVY--GHRDSPVVPVLVFFF--------SKVGQTS------IGLGVEQTALNDGL  108 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~--~~~--~~s~SPIiPV~~g~~--------~~~~~~a------~~i~~PtVP~g~~R  108 (153)
                      ++++++++++..+|++.|++.+.  ...  ..+.++|+++.+.++        ..+..+.      .....|.   +...
T Consensus       312 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~---~~~~  388 (413)
T cd00610         312 EGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPS---GGNV  388 (413)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeec---CCCE
Confidence            57889999999999999987633  111  124578999988764        2233332      2223333   2578


Q ss_pred             EEEEeeCCCCHHHHHHHHHHHHHH
Q psy5049         109 SLYESSHLRSANLWNRPHSPSLMA  132 (153)
Q Consensus       109 lRI~lsA~HT~edId~L~~~~L~~  132 (153)
                      +|++++..||++||+++++ .++.
T Consensus       389 lR~~~~~~~t~~~i~~~~~-~l~~  411 (413)
T cd00610         389 IRLLPPLIITEEEIDEGLD-ALDE  411 (413)
T ss_pred             EEEECCCcCCHHHHHHHHH-HHHH
Confidence            9999999999999999888 6654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=96.79  E-value=0.0038  Score=55.33  Aligned_cols=80  Identities=11%  Similarity=0.003  Sum_probs=52.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHh----CCCccc-------------CCCCCCeEEEEcCCchHHHhcc----------ccc
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNR----LGLIVY-------------GHRDSPVVPVLVFFFSKVGQTS----------IGL   97 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~----~G~~~~-------------~~s~SPIiPV~~g~~~~~~~~a----------~~i   97 (153)
                      +.+..+++++++..+|++.|++    .|+++.             ..+.++|.|+...+.+....+.          .++
T Consensus       320 ~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~  399 (433)
T PRK00615        320 REQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPS  399 (433)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCc
Confidence            3456799999999999777754    455431             1133456667666655444443          333


Q ss_pred             cCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049          98 GVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus        98 ~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      .||+         ..+|+.||++|||++++ +++++.
T Consensus       400 ~~~~---------~~ls~~ht~~did~~~~-a~~~~~  426 (433)
T PRK00615        400 PFEA---------SFLSSAHSMENLDYAQN-VLIDSL  426 (433)
T ss_pred             cccc---------cceecCCCHHHHHHHHH-HHHHHH
Confidence            4444         28999999999999999 776554

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=96.78  E-value=0.013  Score=48.35  Aligned_cols=86  Identities=15%  Similarity=-0.067  Sum_probs=58.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCe-EEEEcCCc-----hHHHhcc---ccccCCCCCCCCceEEEEee
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHR--DSPV-VPVLVFFF-----SKVGQTS---IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s--~SPI-iPV~~g~~-----~~~~~~a---~~i~~PtVP~g~~RlRI~ls  114 (153)
                      .++.+++++++..++++.|.+.|+.+....  .+++ +.+.+...     ....+..   ..+..|..+.+...+||+.+
T Consensus       257 ~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~  336 (355)
T TIGR03301       257 VPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTLADTFRIGTI  336 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccccccEEEEecC
Confidence            367888999999999999999998653322  2443 45555431     1222222   33445554434478999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy5049         115 HLRSANLWNRPHSPSLMA  132 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~  132 (153)
                      ..+|++|++++++ +|+.
T Consensus       337 ~~~~~~~i~~~~~-~l~~  353 (355)
T TIGR03301       337 GEIDAADIERLLE-AIKD  353 (355)
T ss_pred             CCCCHHHHHHHHH-HHHh
Confidence            9999999999988 7764

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=96.78  E-value=0.0066  Score=50.35  Aligned_cols=84  Identities=7%  Similarity=-0.124  Sum_probs=57.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCCC-----CCCeEEEEcCC-----chHHHhcc-------ccccCCCCCCC--
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHR-----DSPVVPVLVFF-----FSKVGQTS-------IGLGVEQTALN--  105 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s-----~SPIiPV~~g~-----~~~~~~~a-------~~i~~PtVP~g--  105 (153)
                      -++.+++.++|..++++.|.+. |+.+.+..     ..+++|+.+.+     ..+..+..       ....+|.++..  
T Consensus       230 ~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~  309 (352)
T cd00616         230 LDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPY  309 (352)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhh
Confidence            3667788899999999999984 66654322     24689998863     22333322       22233433221  


Q ss_pred             ------------------CceEEEEeeCCCCHHHHHHHHHHHH
Q psy5049         106 ------------------DGLSLYESSHLRSANLWNRPHSPSL  130 (153)
Q Consensus       106 ------------------~~RlRI~lsA~HT~edId~L~~~~L  130 (153)
                                        +..+|++++..+|++||+++++ +|
T Consensus       310 ~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~-~l  351 (352)
T cd00616         310 KKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIE-AL  351 (352)
T ss_pred             hhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHH-Hh
Confidence                              2589999999999999999988 55

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=96.72  E-value=0.015  Score=49.54  Aligned_cols=84  Identities=10%  Similarity=-0.080  Sum_probs=60.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc-hHHHhcc-------ccccCCCCCCCCceEEEEeeCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF-SKVGQTS-------IGLGVEQTALNDGLSLYESSHLRS  118 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~-~~~~~~a-------~~i~~PtVP~g~~RlRI~lsA~HT  118 (153)
                      .+.++.++++..++.+.|++.|+.+. .+.+..+.+-++.+ ..+..++       ..+++|.++.+...+||++.   +
T Consensus       273 ~~~~~~~~~~r~~~~~~L~~~g~~~~-p~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~---~  348 (369)
T PRK08153        273 AEVVGKIAAARDRIAAIARANGLTPL-PSATNFVAIDCGRDGAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG---P  348 (369)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCccC-CCcCcEEEEECCCCcccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---C
Confidence            44567777888888888998888653 46678877766532 2222222       55577887766789999987   7


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy5049         119 ANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       119 ~edId~L~~~~L~~~~~  135 (153)
                      ++|++++++ +++++.+
T Consensus       349 ~~~~~~~~~-al~~~~~  364 (369)
T PRK08153        349 DEELDLFAE-ALPEALE  364 (369)
T ss_pred             HHHHHHHHH-HHHHHHH
Confidence            999999999 8876654

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=96.66  E-value=0.016  Score=49.47  Aligned_cols=91  Identities=16%  Similarity=0.077  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCC----CCCeEEEEcCCc--hHHHhcc----ccccC---CCCC----C-CCc
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHR----DSPVVPVLVFFF--SKVGQTS----IGLGV---EQTA----L-NDG  107 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s----~SPIiPV~~g~~--~~~~~~a----~~i~~---PtVP----~-g~~  107 (153)
                      +..+++..+..+++++.|.+. |+.+.+..    .++++.+.+.+.  ....+..    +.++.   .+.|    . ...
T Consensus       294 ~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~  373 (403)
T TIGR01979       294 ENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPA  373 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCcCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCC
Confidence            466788889999999999876 66654322    267888876432  2222221    22221   1111    0 135


Q ss_pred             eEEEEeeCCCCHHHHHHHHHHHHHHHHhcCC
Q psy5049         108 LSLYESSHLRSANLWNRPHSPSLMAVFRGGG  138 (153)
Q Consensus       108 RlRI~lsA~HT~edId~L~~~~L~~~~~~~~  138 (153)
                      .+||+++..+|++|++++++ +|+.+.+.+|
T Consensus       374 ~iRiS~~~~~t~~di~~l~~-~l~~~~~~~~  403 (403)
T TIGR01979       374 TCRASFYIYNTEEDIDALVE-ALKKVRKFFG  403 (403)
T ss_pred             EEEEEeccCCCHHHHHHHHH-HHHHHHHHhC
Confidence            79999999999999999999 8887776543

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=96.60  E-value=0.018  Score=51.51  Aligned_cols=83  Identities=6%  Similarity=-0.004  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC---------CchHHHhcc-------ccccCCCCCCCCceEEE
Q psy5049          48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF---------FFSKVGQTS-------IGLGVEQTALNDGLSLY  111 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g---------~~~~~~~~a-------~~i~~PtVP~g~~RlRI  111 (153)
                      +..++..++++|++++|.+. +.+. .+...+..+++.         +...+.+..       ..+.+|.++  ...+|+
T Consensus       349 ~~a~~~~~~a~~l~~~L~~~-~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~--~~~l~i  424 (481)
T PRK04366        349 EVSEDAVLNANYLKARLKDI-YDLP-YDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIV--PEALMI  424 (481)
T ss_pred             HHHHHHHHHHHHHHHHhHhh-Cccc-CCCCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCcccccccc--CCeEEE
Confidence            34567788999999999987 5442 222222233332         222222222       333567665  468999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         112 ESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +++..+|+||||++++ +|+.+.+
T Consensus       425 s~~e~~t~edid~l~~-~l~~i~~  447 (481)
T PRK04366        425 EPTETESKETLDAFIA-AMKQIAE  447 (481)
T ss_pred             cccCCCCHHHHHHHHH-HHHHHHH
Confidence            9999999999999999 8876654

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=96.57  E-value=0.011  Score=52.74  Aligned_cols=92  Identities=7%  Similarity=-0.084  Sum_probs=65.2

Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHhCC--Cc-cc--CCCCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceE
Q psy5049          41 ICFISGIRRISVLAHNTRYFRRKLNRLG--LI-VY--GHRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLS  109 (153)
Q Consensus        41 l~~~~~~~rr~~L~~ni~~fr~~L~~~G--~~-~~--~~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~Rl  109 (153)
                      +...+.+++.++++++..+|++.|+++.  +. ..  ..+..+++.|.+.+++.+..+.      -.+..|+. .+..++
T Consensus       347 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~-~~~~~l  425 (459)
T PRK11522        347 INVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTL-NNAKTI  425 (459)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCchHHHHHHHHHHHCCeEEEecC-CCCCEE
Confidence            3333456789999999999999998652  32 11  1245789999998765444433      22234443 356899


Q ss_pred             EEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         110 LYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       110 RI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      |++.+..||++|||++++ +++.+.
T Consensus       426 r~~Ppl~~t~~~id~~l~-~l~~~l  449 (459)
T PRK11522        426 RIEPPLTLTIEQCEQVLK-AARKAL  449 (459)
T ss_pred             EEECCccCCHHHHHHHHH-HHHHHH
Confidence            999999999999999998 776554

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=96.57  E-value=0.022  Score=48.66  Aligned_cols=88  Identities=11%  Similarity=0.019  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC--chHHHhcc----cccc---CCCCC----CC-CceEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF--FSKVGQTS----IGLG---VEQTA----LN-DGLSLY  111 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~--~~~~~~~a----~~i~---~PtVP----~g-~~RlRI  111 (153)
                      .+.+++..+...++++.|.+. |+.+.+...++|+.+-+.+  .+...+..    +.++   ..+.+    .| .+.+||
T Consensus       292 ~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRv  371 (398)
T TIGR03392       292 AAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRA  371 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEE
Confidence            466788888999999999876 7665444557788766543  22232222    2221   11101    01 368999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         112 ESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +++..+|++|++++++ +|+.+.+
T Consensus       372 S~~~~~t~~ei~~l~~-~l~~~~~  394 (398)
T TIGR03392       372 SFAPYNTQQDVDALVD-AVGAALE  394 (398)
T ss_pred             EeeccCCHHHHHHHHH-HHHHHHH
Confidence            9999999999999999 8876544

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=96.45  E-value=0.023  Score=49.49  Aligned_cols=86  Identities=12%  Similarity=-0.028  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcC-CchHHHhcc----cc--c-cCCCCCCCCceEEEEeeCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVF-FFSKVGQTS----IG--L-GVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g-~~~~~~~~a----~~--i-~~PtVP~g~~RlRI~lsA~H  117 (153)
                      ++.++++.++..++.+.|++. |+.+........+-+-++ +..+..+..    ..  + ..|..|.....+|++++..+
T Consensus       351 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~  430 (447)
T PRK00451        351 RELAEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLPKPAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKR  430 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecCCCHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCC
Confidence            677889999999999999987 455531111121112222 223323222    11  1 23333433568999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy5049         118 SANLWNRPHSPSLMAV  133 (153)
Q Consensus       118 T~edId~L~~~~L~~~  133 (153)
                      |+|||+++++ +|+.+
T Consensus       431 t~e~i~~l~~-~L~~~  445 (447)
T PRK00451        431 TKEDIDALVA-ALGEV  445 (447)
T ss_pred             CHHHHHHHHH-HHHHH
Confidence            9999999999 88764

>KOG1359|consensus

Probab=96.38  E-value=0.007  Score=52.54  Aligned_cols=65  Identities=25%  Similarity=0.333  Sum_probs=47.2

Q ss_pred             hHHHHHHHhHHHHHHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEE
Q psy5049           2 RLISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVP   81 (153)
Q Consensus         2 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiP   81 (153)
                      +.+.+..-|+..||+.|...||+|+|.    .+|+..-    ..++.      +.+..+.+.|-+.|+-+++-+ .|+||
T Consensus       316 ~~i~~~~a~~qrfr~~me~aGftIsg~----~hPI~pv----~lGda------~lA~~~ad~lLk~Gi~Vigfs-~PvVP  380 (417)
T KOG1359|consen  316 KEIQSRQANTQRFREFMEAAGFTISGA----SHPICPV----MLGDA------RLASKMADELLKRGIYVIGFS-YPVVP  380 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCceecCC----CCCccce----ecccH------HHHHHHHHHHHhcCceEEeec-CCcCC
Confidence            467888999999999999999999987    5774111    12333      234667788888998876544 67655

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=96.37  E-value=0.051  Score=46.78  Aligned_cols=89  Identities=8%  Similarity=-0.158  Sum_probs=62.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcc-cCC--CCC-CeEEEEcCCch---HHHhcc---ccccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIV-YGH--RDS-PVVPVLVFFFS---KVGQTS---IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~-~~~--s~S-PIiPV~~g~~~---~~~~~a---~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      -+.+.++.+++..++++.|.++|+.. ...  ..| +|+++.+.+..   ......   ..+.|+... ..+.+|+++..
T Consensus       260 ~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~-~~g~vRiS~~~  338 (360)
T PRK05355        260 VAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADEELDKKFLAEAKAAGLVGLKGHR-SVGGMRASIYN  338 (360)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCChHHHHHHHHHHHHCCCcccCCCC-ccCcEEEECCC
Confidence            47888899999999999999998632 111  235 46888776642   221221   222355542 24689999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc
Q psy5049         116 LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~~  136 (153)
                      .+|+||||+|++ +|+.+.+.
T Consensus       339 ~nt~eei~~l~~-~l~~~~~~  358 (360)
T PRK05355        339 AMPLEGVQALVD-FMKEFERR  358 (360)
T ss_pred             CCCHHHHHHHHH-HHHHHHHh
Confidence            999999999999 88876654

>PRK10534 L-threonine aldolase; Provisional

Probab=96.28  E-value=0.047  Score=45.37  Aligned_cols=78  Identities=14%  Similarity=0.075  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC--chHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHH
Q psy5049          48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF--FSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANL  121 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~--~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~ed  121 (153)
                      +.+++.+++..++.+.|.+.|+.+. .+.++.+.+-+++  .....+..    +.++ |.     +.+|++.+..+|+|+
T Consensus       247 ~~~~~~~~~r~~l~~~L~~~g~~~~-~~~~nfv~~~~~~~~~~~~~~~l~~~gi~v~-~~-----~~~rl~~~~r~t~e~  319 (333)
T PRK10534        247 ARLQEDHDNAAWLAEQLREAGADVM-RQDTNMLFVRVGEEQAAALGEYMRERNVLIN-AS-----PIVRLVTHLDVSREQ  319 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCccC-CCCceEEEEECCchhHHHHHHHHHHcCeeec-CC-----ceEEEEEEeCCCHHH
Confidence            4455566677899999999999874 4678888888763  22333222    3332 32     268999998999999


Q ss_pred             HHHHHHHHHHHH
Q psy5049         122 WNRPHSPSLMAV  133 (153)
Q Consensus       122 Id~L~~~~L~~~  133 (153)
                      ++++++ ++..+
T Consensus       320 ~~~~~~-~l~~~  330 (333)
T PRK10534        320 LAEVVA-HWRAF  330 (333)
T ss_pred             HHHHHH-HHHHH
Confidence            999998 77654

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=96.28  E-value=0.023  Score=48.82  Aligned_cols=86  Identities=14%  Similarity=0.087  Sum_probs=57.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCC-CCCCeEEEEcCCc--hHHHhcc----cccc-----------CCCCCCCCc
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGH-RDSPVVPVLVFFF--SKVGQTS----IGLG-----------VEQTALNDG  107 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~-s~SPIiPV~~g~~--~~~~~~a----~~i~-----------~PtVP~g~~  107 (153)
                      +..++++++...++++.|.+. |+.+.+. ..++|+.+.+...  ..+....    +.++           ...++   +
T Consensus       300 ~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~---~  376 (406)
T PRK09295        300 NNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVP---A  376 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCC---C
Confidence            566788888999999999876 5555432 2367888876532  2222222    1111           11112   5


Q ss_pred             eEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         108 LSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       108 RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                      .+|++++..+|+||||++++ +|+.+.+.
T Consensus       377 ~iRiS~~~ynt~~did~l~~-~l~~i~~~  404 (406)
T PRK09295        377 MCRASLAMYNTHEEVDRLVA-GLQRIHRL  404 (406)
T ss_pred             EEEEEccCCCCHHHHHHHHH-HHHHHHHH
Confidence            79999999999999999999 88877553

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=96.27  E-value=0.047  Score=46.90  Aligned_cols=88  Identities=10%  Similarity=-0.089  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCC-cccCCC---CCCeEEEEcCCc----hHHHhcc----ccccCCCCCCCCceEEEEee
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGL-IVYGHR---DSPVVPVLVFFF----SKVGQTS----IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~-~~~~~s---~SPIiPV~~g~~----~~~~~~a----~~i~~PtVP~g~~RlRI~ls  114 (153)
                      +.+.++.++...++++.+.+.|+ ..+...   .|++++++...+    +...+..    +.+..+--+.+..-+||+++
T Consensus       260 e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~  339 (361)
T TIGR01366       260 DWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMF  339 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcC
Confidence            55568889999999999999984 333222   266666555321    2222222    33333322334567999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHh
Q psy5049         115 HLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~  135 (153)
                      ..+|++||+++++ +|+.+.+
T Consensus       340 ~~~t~~di~~l~~-al~~~~~  359 (361)
T TIGR01366       340 PAIDPDDVEALTE-CVDWVVE  359 (361)
T ss_pred             CCCCHHHHHHHHH-HHHHHHh
Confidence            9999999999999 8877644

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=96.25  E-value=0.056  Score=46.39  Aligned_cols=88  Identities=5%  Similarity=-0.196  Sum_probs=60.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCC---CCC-CeEEEEcCCc---hHHHhcc---ccccCCCCCCCCceEEEEee
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGH---RDS-PVVPVLVFFF---SKVGQTS---IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~---s~S-PIiPV~~g~~---~~~~~~a---~~i~~PtVP~g~~RlRI~ls  114 (153)
                      -+.+.++.+++..++++.|.++ |+.....   ..+ +|+++.+.+.   .+.....   ..+.++.... .+.+|+++.
T Consensus       249 ~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~-~g~vRvS~~  327 (349)
T TIGR01364       249 VKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEELEKRFLKEAEERGLVSLKGHRS-VGGMRASIY  327 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChhHhHHHHHHHHHCCCcccCCccc-cCeeEEECc
Confidence            5788888999999999999999 4633221   235 4677776643   2221221   2245555331 358999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHh
Q psy5049         115 HLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~  135 (153)
                      -.+|+||||++++ +|+.+.+
T Consensus       328 ~~nt~edid~l~~-al~~~~~  347 (349)
T TIGR01364       328 NAMPLEGVQALVD-FMKEFQK  347 (349)
T ss_pred             CCCCHHHHHHHHH-HHHHHHH
Confidence            9999999999999 8887654

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=96.25  E-value=0.06  Score=45.87  Aligned_cols=86  Identities=8%  Similarity=-0.129  Sum_probs=58.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCc-ccC--CCCC-CeEEEEcCCc---hHHHhcc---ccccCCCCCCCCceEEEEee
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLI-VYG--HRDS-PVVPVLVFFF---SKVGQTS---IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~-~~~--~s~S-PIiPV~~g~~---~~~~~~a---~~i~~PtVP~g~~RlRI~ls  114 (153)
                      -+.+.++.+++..++++.|.++ |+. ...  ...+ +|+++-+.+.   .+.....   ..+.|+.-. ..+.+|+++.
T Consensus       257 ~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~-~~g~vR~S~~  335 (355)
T cd00611         257 VEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHR-SVGGIRASIY  335 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCChhhhHHHHHHHHHCCCcccCCCc-ccCeEEEEcc
Confidence            4677888999999999999998 752 111  1235 4588777662   2222222   222444422 1368999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy5049         115 HLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~  133 (153)
                      ..+|+||||+|++ +|+.+
T Consensus       336 ~~nt~edi~~l~~-al~~~  353 (355)
T cd00611         336 NALSLEGVQALAD-FMKEF  353 (355)
T ss_pred             CCCCHHHHHHHHH-HHHHH
Confidence            9999999999999 88764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=96.19  E-value=0.023  Score=49.09  Aligned_cols=86  Identities=9%  Similarity=0.097  Sum_probs=57.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCC--CcccC--CCCCCeEEEEcCCc--hHHHhcc-----ccc-cCCCCCCCCceEEEE
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLG--LIVYG--HRDSPVVPVLVFFF--SKVGQTS-----IGL-GVEQTALNDGLSLYE  112 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~~~~--~s~SPIiPV~~g~~--~~~~~~a-----~~i-~~PtVP~g~~RlRI~  112 (153)
                      ..++++++++++..+|++.|++++  +.+.+  .+...++++.+.+.  ..+..++     ..+ ..|   .|...+|++
T Consensus       296 ~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~---~g~~~lR~~  372 (397)
T TIGR03246       296 NTPELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALI---AGPNVVRFA  372 (397)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEee---cCCCEEEEe
Confidence            456789999999999999999865  22111  13345667766442  2233332     222 222   355799999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHH
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~  134 (153)
                      ++..||++||+++++ .++.+.
T Consensus       373 p~~~~t~~~i~~~~~-~l~~~l  393 (397)
T TIGR03246       373 PSLVISDDDIDEGLA-RFERAI  393 (397)
T ss_pred             CCCCCCHHHHHHHHH-HHHHHH
Confidence            999999999999998 776544

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=96.19  E-value=0.027  Score=48.18  Aligned_cols=85  Identities=7%  Similarity=-0.051  Sum_probs=59.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccC--CCCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceEEEEeeCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYG--HRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~--~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      ..+.++++++...+|++.|++.++...+  .+...++.|.+..+ .+..+.      ..+..|.   +...+|++++..|
T Consensus       301 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g~g~~~~i~~~~~-~~~~~~~~l~~~Gv~~~~~---~~~~iR~~p~~~~  376 (398)
T PRK03244        301 SEGLLENAERLGEQLRAGIEALGHPLVDHVRGRGLLLGIVLTAP-VAKAVEAAAREAGFLVNAV---APDVIRLAPPLII  376 (398)
T ss_pred             hccHHHHHHHHHHHHHHHHHhcCCCceeeEeeccEEEEEEEecc-HHHHHHHHHHHCCeEEeec---CCCEEEEECCCcC
Confidence            4578899999999999999987653211  23467888877432 222221      2223332   3478999999999


Q ss_pred             CHHHHHHHHHHHHHHHHh
Q psy5049         118 SANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       118 T~edId~L~~~~L~~~~~  135 (153)
                      |++||+++++ +++.+.+
T Consensus       377 t~~~i~~~~~-~l~~~l~  393 (398)
T PRK03244        377 TDAQVDAFVA-ALPAILD  393 (398)
T ss_pred             CHHHHHHHHH-HHHHHHH
Confidence            9999999998 8876654

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=96.19  E-value=0.032  Score=46.99  Aligned_cols=82  Identities=10%  Similarity=0.089  Sum_probs=54.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccC---CCCCCeEEEEcCCc-hHHHhcc----ccccCCCCCCCCceEEEEeeCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYG---HRDSPVVPVLVFFF-SKVGQTS----IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~---~s~SPIiPV~~g~~-~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      ..+.+++++++..++++.|.+.+.....   .+.+.++.+.+.++ ....+..    +.+. |   .+...+|++++..|
T Consensus       288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~Gv~v~-~---~~~~~lRi~~~~~~  363 (379)
T TIGR00707       288 KERLLENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIELEAPCKDIVKKALEKGLLVN-C---AGPKVLRFLPPLII  363 (379)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhCCCCccccCceEEEEEecCcHHHHHHHHHHCCcEEe-e---CCCCEEEEECCCcC
Confidence            4568899999999999999876543311   12345566655433 2222222    2233 3   24578999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy5049         118 SANLWNRPHSPSLMA  132 (153)
Q Consensus       118 T~edId~L~~~~L~~  132 (153)
                      |+|+++++++ +++.
T Consensus       364 t~~~i~~~~~-~l~~  377 (379)
T TIGR00707       364 TKEEIDEAVS-ALEE  377 (379)
T ss_pred             CHHHHHHHHH-HHHH
Confidence            9999999888 7764

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=96.18  E-value=0.056  Score=45.14  Aligned_cols=84  Identities=10%  Similarity=-0.039  Sum_probs=56.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC--chHHHhcc----ccccCCCCCCCCceEEEEeeCCCCH
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF--FSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSA  119 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~--~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~  119 (153)
                      .++.+++++++..++.+.|++.|+.+. .+.+.++.+-+.+  .....+..    ..+++-..|.+...+||+++   ++
T Consensus       262 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~  337 (353)
T PRK05387        262 FEETRAKVIATRERLVEELEALGFEVL-PSKANFVFARHPSHDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG---TD  337 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCeEC-CCcCcEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CH
Confidence            456788999999999999999998653 3556676655542  22222222    33332222445678999986   67


Q ss_pred             HHHHHHHHHHHHHHH
Q psy5049         120 NLWNRPHSPSLMAVF  134 (153)
Q Consensus       120 edId~L~~~~L~~~~  134 (153)
                      ++++++++ +|+.+.
T Consensus       338 ~~~~~~~~-~L~~~~  351 (353)
T PRK05387        338 EEMEALVD-ALKEIL  351 (353)
T ss_pred             HHHHHHHH-HHHHHh
Confidence            99999998 777654

>PLN02721 threonine aldolase

Probab=96.16  E-value=0.053  Score=44.97  Aligned_cols=83  Identities=14%  Similarity=0.015  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCcc-cCCCCCCeEEEEcCCc-----hHHHhcc---ccccCCCCCCCCceEEEEeeCCC
Q psy5049          48 RRISVLAHNTRYFRRKLNRL-GLIV-YGHRDSPVVPVLVFFF-----SKVGQTS---IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~-G~~~-~~~s~SPIiPV~~g~~-----~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      ++.++.+++..++.+.|.+. |+.+ ...+.++++.+-+.+.     ....+..   .....   |.+...+|++++..+
T Consensus       258 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~---~~~~~~lR~~~~~~~  334 (353)
T PLN02721        258 PKLEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGSRITAEKLCKSLEEHGVLLM---PGNSSRIRVVTHHQI  334 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCccccHHHHHHHHHhCCcEEe---cCCCceEEEEecCcC
Confidence            34455577888999999987 5532 2334466766665431     1222221   22222   235679999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy5049         118 SANLWNRPHSPSLMAVF  134 (153)
Q Consensus       118 T~edId~L~~~~L~~~~  134 (153)
                      |++|++++++ +|+++.
T Consensus       335 ~~~~i~~~~~-~l~~~~  350 (353)
T PLN02721        335 SDSDVQYTLS-CFQQAA  350 (353)
T ss_pred             CHHHHHHHHH-HHHHHh
Confidence            9999999998 777654

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=96.15  E-value=0.044  Score=47.81  Aligned_cols=116  Identities=11%  Similarity=0.079  Sum_probs=76.4

Q ss_pred             HHHHhHHHHHHH----hhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHH--HHHHHHHHH-hCCCcccCCCCCC
Q psy5049           6 VLAQNTRYFRRK----LNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHN--TRYFRRKLN-RLGLIVYGHRDSP   78 (153)
Q Consensus         6 ~~~~~~~~~~~~----l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~n--i~~fr~~L~-~~G~~~~~~s~SP   78 (153)
                      ++++.-+|+|+.    |+++||..        -|+   ..--+..-|++..-++|  ++++.+.+. ..|+.+...+++.
T Consensus       215 ~~~~~a~~~rK~~Ggl~~k~r~la--------A~~---~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN  283 (342)
T COG2008         215 DFAKRARRWRKRAGGLMRKARFLA--------AQG---LYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETN  283 (342)
T ss_pred             HHHHHHHHHHHHhcccHhhhhHHH--------HHH---HHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCccc
Confidence            455555666654    45556551        121   12334556999999999  999999999 5598876557899


Q ss_pred             eEEEEcCCchH-HHhccccccCCCC--CCCCceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049          79 VVPVLVFFFSK-VGQTSIGLGVEQT--ALNDGLSLYESSHLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus        79 IiPV~~g~~~~-~~~~a~~i~~PtV--P~g~~RlRI~lsA~HT~edId~L~~~~L~~~  133 (153)
                      ++.+.+.+... .........|-.|  +.+...+|++.|=+-|+||||++++ .++.+
T Consensus       284 ~vf~~l~~~~i~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~-~~~~~  340 (342)
T COG2008         284 MVFVRLPESAIEALRLAGALFYRGVLIGAHGEIVRFVTSWATSEEDVDELVA-AIKAL  340 (342)
T ss_pred             EEEEECChHHHHHHHhhchhheeeeeccCCCceEEEEeeccCCHHHHHHHHH-HHHHh
Confidence            99998876432 2222222333311  2222689999999999999999887 65543

>TIGR01814 kynureninase kynureninase

Probab=96.15  E-value=0.035  Score=47.84  Aligned_cols=85  Identities=9%  Similarity=-0.146  Sum_probs=56.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-----CCcccCCC----CCCeEEEEcC-CchHHHhcc--ccccCCCCCCCCceEEEEe
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-----GLIVYGHR----DSPVVPVLVF-FFSKVGQTS--IGLGVEQTALNDGLSLYES  113 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-----G~~~~~~s----~SPIiPV~~g-~~~~~~~~a--~~i~~PtVP~g~~RlRI~l  113 (153)
                      .++.++++++...++++.|.+.     |+.+.+..    .++|+.+.+. +.+...+..  ..|.-  ...+...+||++
T Consensus       307 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~~~~~~~~~~L~~~gi~v--~~~~~~~iRiS~  384 (406)
T TIGR01814       307 MEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHPVPGKAVFQALIKRGVIG--DKREPSVIRVAP  384 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEecCCHHHHHHHHHHCCEEE--eccCCCeEEEec
Confidence            3778899999999999999874     35543321    2468877765 444433332  22210  122346899999


Q ss_pred             -eCCCCHHHHHHHHHHHHHHH
Q psy5049         114 -SHLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       114 -sA~HT~edId~L~~~~L~~~  133 (153)
                       +..+|++|||++++ +++.+
T Consensus       385 ~~~~nt~~did~l~~-~l~~~  404 (406)
T TIGR01814       385 VPLYNTFVDVYDAVN-VLEEI  404 (406)
T ss_pred             hhccCCHHHHHHHHH-HHHHH
Confidence             57999999999998 77654

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=96.10  E-value=0.035  Score=47.56  Aligned_cols=84  Identities=13%  Similarity=0.023  Sum_probs=57.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccC--CCCCCeEEEEc-CCchHHHhcc-----ccc-cCCCCCCCCceEEEEeeCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYG--HRDSPVVPVLV-FFFSKVGQTS-----IGL-GVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~--~s~SPIiPV~~-g~~~~~~~~a-----~~i-~~PtVP~g~~RlRI~lsA~  116 (153)
                      ..+.+++++++..+|++.|++.++....  .+...++++.+ ++.....++.     ..| ..   +.+...+|++.+..
T Consensus       306 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~---~~~~~~lR~~p~~~  382 (401)
T PRK00854        306 EEGMIENAAEMGAYFLEGLRSIRSNIVREVRGRGLMLAVELEPEAGGARQYCEALKERGLLAK---DTHDHTIRLAPPLV  382 (401)
T ss_pred             HcCHHHHHHHHHHHHHHHHHhhccCceEEEeccceEEEEEEecCchhHHHHHHHHHHCCeEEe---cCCCCEEEEeCCcc
Confidence            3457899999999999999987754211  24467777755 3322233332     222 22   23457999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy5049         117 RSANLWNRPHSPSLMAV  133 (153)
Q Consensus       117 HT~edId~L~~~~L~~~  133 (153)
                      ||++||+++++ .++.+
T Consensus       383 ~t~e~i~~~i~-~l~~~  398 (401)
T PRK00854        383 ITREQVDWALE-QIAKV  398 (401)
T ss_pred             cCHHHHHHHHH-HHHHH
Confidence            99999999888 77654

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=95.96  E-value=0.036  Score=47.00  Aligned_cols=83  Identities=10%  Similarity=-0.046  Sum_probs=56.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC--CCcccC--CCCCCeEEEEcCCch-HHHhcc---ccccCCCCCCCCceEEEEeeCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL--GLIVYG--HRDSPVVPVLVFFFS-KVGQTS---IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~--G~~~~~--~s~SPIiPV~~g~~~-~~~~~a---~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      .++.+++++++..++++.|++.  ++....  .+...++.+-+.++. ......   ..+..   |.|...+||+.+..|
T Consensus       285 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~l~~~gv~v~---~~g~~~lRi~p~~~~  361 (377)
T PRK02936        285 QPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTEEVAPVIEQLREEGLLVL---SAGPNVIRLLPPLVV  361 (377)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecchHHHHHHHHHHCCeEEe---cCCCCEEEEECCccc
Confidence            4578899999999999999874  332211  134567888776542 122211   22232   346789999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy5049         118 SANLWNRPHSPSLMA  132 (153)
Q Consensus       118 T~edId~L~~~~L~~  132 (153)
                      |+++|+++++ .++.
T Consensus       362 ~~~~i~~~i~-~l~~  375 (377)
T PRK02936        362 TKEELDQAVY-LLKK  375 (377)
T ss_pred             CHHHHHHHHH-HHHH
Confidence            9999999888 6654

>PRK07908 hypothetical protein; Provisional

Probab=95.92  E-value=0.074  Score=44.70  Aligned_cols=86  Identities=17%  Similarity=0.101  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc--------ccccCCCCCCCCceEEEEeeCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS--------IGLGVEQTALNDGLSLYESSHLRS  118 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a--------~~i~~PtVP~g~~RlRI~lsA~HT  118 (153)
                      .+.++++.++-.++.+.|.+.|+.+...+.+..+-+-+.+.+...+..        .+..|+.  .+..-+||++   .+
T Consensus       256 ~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~~~~~~~~~~~~~~~~l~~~gI~v~~g~~f~~--~~~~~vRis~---~~  330 (349)
T PRK07908        256 AADAARLAADRAEMVAGLRAVGARVVDPAAAPFVLVRVPDAELLRKRLRERGIAVRRGDTFPG--LDPDYLRLAV---RP  330 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcEeccCCCceEEEEECCcHHHHHHHHHhCCEEEEECCCCCC--CCCCeEEEEe---CC
Confidence            456788889999999999988876544355666666555433333332        2223332  2357899999   47


Q ss_pred             HHHHHHHHHHHHHHHHhcCC
Q psy5049         119 ANLWNRPHSPSLMAVFRGGG  138 (153)
Q Consensus       119 ~edId~L~~~~L~~~~~~~~  138 (153)
                      ++|++++++ +|+.+...+|
T Consensus       331 ~~~~~~l~~-al~~~~~~~~  349 (349)
T PRK07908        331 RAEVPVLVQ-ALAEILKAGG  349 (349)
T ss_pred             CccHHHHHH-HHHHHHhccC
Confidence            899999999 8888776654

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=95.77  E-value=0.027  Score=49.32  Aligned_cols=86  Identities=10%  Similarity=-0.072  Sum_probs=53.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCC--CcccCCCCCCeEEEEcC----------CchHHHhcc-----ccc-cCCCCCCCC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLG--LIVYGHRDSPVVPVLVF----------FFSKVGQTS-----IGL-GVEQTALND  106 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~~~~~s~SPIiPV~~g----------~~~~~~~~a-----~~i-~~PtVP~g~  106 (153)
                      +.+.++++++++.++|++.|.+..  +.+  ..+.+..+++++          +...+..+.     ..+ ..|.-+ +.
T Consensus       324 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~--~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~-~~  400 (433)
T PRK08117        324 KEEKLLDNANEMGAYALERLEVLKEKHPV--IGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGN-AG  400 (433)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhcCCc--eeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCC-CC
Confidence            345789999999999999998753  221  122333334332          122222222     333 333322 35


Q ss_pred             ceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         107 GLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       107 ~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      ..+|++.+..||++||+++++ .++...
T Consensus       401 ~~lRl~p~~~~t~~~i~~~~~-~l~~~l  427 (433)
T PRK08117        401 NVLRMIPPLTVTKEEIDEGLD-ILDEAL  427 (433)
T ss_pred             CEEEEeCCccCCHHHHHHHHH-HHHHHH
Confidence            799999999999999999998 776544

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=95.77  E-value=0.054  Score=46.00  Aligned_cols=112  Identities=12%  Similarity=0.057  Sum_probs=61.8

Q ss_pred             HHHHHhHHHHHHHhhhc-ccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE
Q psy5049           5 SVLAQNTRYFRRKLNRL-GLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL   83 (153)
Q Consensus         5 ~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~   83 (153)
                      .+.++.++|++++|..+ |+.++|..+...+++.+..+.....           ..+.+.|.+.|+.+.  +.+..-+-.
T Consensus       262 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~L~~~gI~v~--~g~~c~~~~  328 (382)
T TIGR03403       262 SHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGVEG-----------EAMLWDLNKAGIAAS--TGSACASED  328 (382)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCCCH-----------HHHHHhhccCCEEEE--chhccCCCC
Confidence            45667788999999874 7888886544445443322321111           123334666777652  112211011


Q ss_pred             cCCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049          84 VFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus        84 ~g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +.. ....   .++.++. +...+-+|++++..+|+||||++++ +|+.+.+
T Consensus       329 ~~~-~~v~---~~~g~~~-~~~~~~iR~s~~~~~t~~did~~~~-~l~~~~~  374 (382)
T TIGR03403       329 LEA-NPVM---VAIGADK-ELAHTAIRLSLSRFTTEEEIDYTIE-VFKKAVQ  374 (382)
T ss_pred             CCc-CHHH---HHcCCCh-HHhCeeEEEECCCCCCHHHHHHHHH-HHHHHHH
Confidence            111 1111   1122211 2234579999999999999999999 8876543

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=95.76  E-value=0.059  Score=45.27  Aligned_cols=82  Identities=16%  Similarity=0.062  Sum_probs=53.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCC--CCCCeEEEEcCCc--hHHHhcc----cccc---CCCCC----C-CCce
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGH--RDSPVVPVLVFFF--SKVGQTS----IGLG---VEQTA----L-NDGL  108 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~--s~SPIiPV~~g~~--~~~~~~a----~~i~---~PtVP----~-g~~R  108 (153)
                      .++++++.+++.+++++.|.+. |+.+...  ...+++.+-+.+.  .+..+..    ..+.   +.++|    . ....
T Consensus       273 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~  352 (373)
T cd06453         273 MEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGT  352 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCcCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCe
Confidence            3667888889999999999987 4554321  2467888877542  2222222    2121   11211    1 2468


Q ss_pred             EEEEeeCCCCHHHHHHHHH
Q psy5049         109 SLYESSHLRSANLWNRPHS  127 (153)
Q Consensus       109 lRI~lsA~HT~edId~L~~  127 (153)
                      +||+++..+|++|+|++++
T Consensus       353 iRis~~~~~t~~di~~~~~  371 (373)
T cd06453         353 VRASFGLYNTEEEIDALVE  371 (373)
T ss_pred             EEEEecCCCCHHHHHHHHh
Confidence            9999999999999999987

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=95.73  E-value=0.076  Score=44.85  Aligned_cols=95  Identities=7%  Similarity=-0.075  Sum_probs=53.4

Q ss_pred             HHHHHhHHHHHHHhhhc-ccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE
Q psy5049           5 SVLAQNTRYFRRKLNRL-GLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL   83 (153)
Q Consensus         5 ~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~   83 (153)
                      .+..++.+||+++|.++ ||.++++..+ ..++.  .+......+...........+.+.|.+.|+..            
T Consensus       264 ~~~~~~~~~l~~~L~~l~g~~v~~~~~~-~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~------------  328 (361)
T cd06452         264 DEEVEKARWFVAELEKIEGIKQLGEKPK-NHDLM--FFETPSFDEIAKKHKRRGYFLYSELKKRGIHG------------  328 (361)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEECCCCC-CCceE--EEEcCCcchhhhhccccchhHHHHHHHcCceE------------
Confidence            33446778999999999 9999875432 23321  12222111110001112234667777666420            


Q ss_pred             cCCchHHHhccccccCCCCCCCCc-eEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049          84 VFFFSKVGQTSIGLGVEQTALNDG-LSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus        84 ~g~~~~~~~~a~~i~~PtVP~g~~-RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                                    .+|    |.. -+|++. ..+|+||++.+++ +|+.+.
T Consensus       329 --------------~~~----~~~~~~ri~~-~g~~~e~~~~l~~-al~~~~  360 (361)
T cd06452         329 --------------IKP----GLTRYFKLST-YGLTWEQVEYVVD-AFKEIA  360 (361)
T ss_pred             --------------EcC----CCceEEEEEe-cCCCHHHHHHHHH-HHHHHh
Confidence                          012    233 466666 6699999999998 887653

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=95.71  E-value=0.14  Score=44.12  Aligned_cols=88  Identities=10%  Similarity=-0.158  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCC-cccCC---CCC-CeEEEEcCC-----chH-HHhcc---ccccCCCCCCCCceEEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGL-IVYGH---RDS-PVVPVLVFF-----FSK-VGQTS---IGLGVEQTALNDGLSLYE  112 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~-~~~~~---s~S-PIiPV~~g~-----~~~-~~~~a---~~i~~PtVP~g~~RlRI~  112 (153)
                      +.+.++.++.+.++++.|.+.|. .+...   ..+ .|+.+.+.+     +.. ...+.   ..++.-........+|++
T Consensus       271 e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis  350 (378)
T PRK03080        271 DALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIW  350 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHcCCeeccccccCCCCcEEEe
Confidence            66788999999999999998874 33321   124 478887765     111 11111   222221111134689999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      .+-.+|++||+++++ +++.+.+
T Consensus       351 ~~~~~t~~di~~l~~-al~~~~~  372 (378)
T PRK03080        351 CGPTVEPADVEALTP-WLDWAFE  372 (378)
T ss_pred             cCCCCCHHHHHHHHH-HHHHHHH
Confidence            999999999999999 8876544

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=95.69  E-value=0.084  Score=46.31  Aligned_cols=88  Identities=9%  Similarity=-0.087  Sum_probs=60.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhC--CCc---ccCCCCCCeEEEEcCCchHHHhcc-----ccc-cCCCCCCCCceEEEEe
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRL--GLI---VYGHRDSPVVPVLVFFFSKVGQTS-----IGL-GVEQTALNDGLSLYES  113 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~--G~~---~~~~s~SPIiPV~~g~~~~~~~~a-----~~i-~~PtVP~g~~RlRI~l  113 (153)
                      ..++..++++++..+|++.|+++  .+.   ....+...++.|.+.+...+..+.     ..+ ..|. +.+..++|++.
T Consensus       316 ~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~~~-~~~~~~lr~~p  394 (425)
T PRK09264        316 SDDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGELAGKIAAEAFENGLIIETS-GPEDEVVKLLP  394 (425)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhCCCceecceecccEEEEEecChHHHHHHHHHHHHCCCEEecc-CCCCCEEEEeC
Confidence            45578899999999999988753  221   111245678888887655444433     333 3333 44458999999


Q ss_pred             eCCCCHHHHHHHHHHHHHHHH
Q psy5049         114 SHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~  134 (153)
                      +..||++||+++++ .++...
T Consensus       395 ~l~~t~~ei~~~~~-~l~~~l  414 (425)
T PRK09264        395 PLTIDEEELEEGLD-ILEEAV  414 (425)
T ss_pred             CCCCCHHHHHHHHH-HHHHHH
Confidence            99999999999988 776544

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=95.69  E-value=0.043  Score=48.34  Aligned_cols=85  Identities=9%  Similarity=0.004  Sum_probs=59.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcc-cC--CCCCCeEEEEcCCchHHHhcc-----ccc-cCCCCCCCCceEEEEeeCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIV-YG--HRDSPVVPVLVFFFSKVGQTS-----IGL-GVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~-~~--~s~SPIiPV~~g~~~~~~~~a-----~~i-~~PtVP~g~~RlRI~lsA~  116 (153)
                      ..+.+++++++..+|++.|++.+... .+  .+.++|++|.+.++..+..+.     ..+ ..|.   + ..+|++....
T Consensus       332 ~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gv~~~~~---~-~~l~~~ppl~  407 (427)
T TIGR00508       332 EGEWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPVNVEELQKKFVEQGVWIRPF---G-KLIYVMPPYI  407 (427)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCccCHHHHHHHHHHCCeEEEec---C-CEEEEECCCC
Confidence            34678999999999999999875321 11  134899999998654333332     222 2222   2 4799999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q psy5049         117 RSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       117 HT~edId~L~~~~L~~~~~  135 (153)
                      ||++|||++++ +++...+
T Consensus       408 ~t~~~id~~~~-~l~~~l~  425 (427)
T TIGR00508       408 ITTEQLQKLTA-ALIEALH  425 (427)
T ss_pred             CCHHHHHHHHH-HHHHHHh
Confidence            99999999998 7766543

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PLN02624 ornithine-delta-aminotransferase

Probab=95.67  E-value=0.027  Score=50.33  Aligned_cols=93  Identities=11%  Similarity=0.003  Sum_probs=62.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCC--Cc-ccC--CCCCCeEEEEcCCc----hHHHhcc------ccccCCCCCCCCceE
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLG--LI-VYG--HRDSPVVPVLVFFF----SKVGQTS------IGLGVEQTALNDGLS  109 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~-~~~--~s~SPIiPV~~g~~----~~~~~~a------~~i~~PtVP~g~~Rl  109 (153)
                      ...++.+++.++..+|++.|.+..  +. ..+  .+...+++|.+.++    ..+.+++      ..+..|   .+...+
T Consensus       342 ~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p---~~~~~l  418 (474)
T PLN02624        342 QDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKP---THDTII  418 (474)
T ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEec---CCCCEE
Confidence            345677889999999999998753  21 111  13456888877653    2233332      222333   356889


Q ss_pred             EEEeeCCCCHHHHHHHHHHHHHHHHhcCCCce
Q psy5049         110 LYESSHLRSANLWNRPHSPSLMAVFRGGGPGI  141 (153)
Q Consensus       110 RI~lsA~HT~edId~L~~~~L~~~~~~~~~~~  141 (153)
                      ||+.+..||++||+++++ .|+++.+...+.|
T Consensus       419 R~~p~l~~t~e~id~~l~-~L~~~l~~~~~~~  449 (474)
T PLN02624        419 RLAPPLSISEDELQECSK-ALSDVLEHDLPKL  449 (474)
T ss_pred             EEECCccCCHHHHHHHHH-HHHHHHHHHHHHh
Confidence            999999999999999998 8877776655544

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=95.67  E-value=0.028  Score=48.80  Aligned_cols=86  Identities=9%  Similarity=0.077  Sum_probs=52.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCC--CcccCC--CCCCeEEEEcCCc--hHHHhcc-----ccc-cCCCCCCCCceEEEE
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLG--LIVYGH--RDSPVVPVLVFFF--SKVGQTS-----IGL-GVEQTALNDGLSLYE  112 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~~~~~--s~SPIiPV~~g~~--~~~~~~a-----~~i-~~PtVP~g~~RlRI~  112 (153)
                      ..++++++++++..+|++.|.+.+  +.+.+.  +...++.+.+.++  ..+..+.     ..+ ..|.   +...+|++
T Consensus       300 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~---g~~~lRl~  376 (406)
T PRK12381        300 NTPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIA---GPNVVRFA  376 (406)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeC---CCCEEEEe
Confidence            456789999999999999998765  221110  1122333333221  1222222     222 2232   45699999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHH
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~  134 (153)
                      ++..||++||+++++ .++...
T Consensus       377 p~~~~t~~~i~~~~~-~l~~~l  397 (406)
T PRK12381        377 PALNISEEEITTGLD-RFARAC  397 (406)
T ss_pred             CCccCCHHHHHHHHH-HHHHHH
Confidence            999999999999888 776544

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=95.66  E-value=0.058  Score=47.08  Aligned_cols=85  Identities=9%  Similarity=-0.112  Sum_probs=57.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccC--CCCCCeEEEEcCCch---HHHhcc------ccccCCCCCCCCceEEEEe
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYG--HRDSPVVPVLVFFFS---KVGQTS------IGLGVEQTALNDGLSLYES  113 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~s~SPIiPV~~g~~~---~~~~~a------~~i~~PtVP~g~~RlRI~l  113 (153)
                      .+...++++++..++++.|++. ++....  .+...++.+.+.++.   .+..+.      ..+..|.   + ..+|++.
T Consensus       325 ~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~---~-~~lR~~p  400 (423)
T PRK05964        325 DEPVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPL---G-NTIYLMP  400 (423)
T ss_pred             hcCHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEec---C-CEEEEeC
Confidence            4568899999999999999876 232111  234677788776543   122222      2223332   2 5899999


Q ss_pred             eCCCCHHHHHHHHHHHHHHHHh
Q psy5049         114 SHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~~  135 (153)
                      +..||++|||++++ +++...+
T Consensus       401 ~l~~t~edId~~v~-~l~~al~  421 (423)
T PRK05964        401 PYIITAEELDRITD-AIVEVAD  421 (423)
T ss_pred             CcccCHHHHHHHHH-HHHHHHh
Confidence            99999999999998 7776554

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=95.63  E-value=0.088  Score=44.20  Aligned_cols=85  Identities=12%  Similarity=0.048  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCC----CCCCeEEEEcCCc--hHHHhcc--c-c--c---------cCCCC-CC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGH----RDSPVVPVLVFFF--SKVGQTS--I-G--L---------GVEQT-AL  104 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~----s~SPIiPV~~g~~--~~~~~~a--~-~--i---------~~PtV-P~  104 (153)
                      ++.+++.+++.+++++.|.+. |+.+.+.    ..++|+.+.+.+.  ....+..  . .  +         .+|.+ +.
T Consensus       269 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~  348 (376)
T TIGR01977       269 ANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTF  348 (376)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCC
Confidence            567888999999999999854 4544331    1367887777532  2222221  1 1  1         11111 22


Q ss_pred             CCceEEEEeeCCCCHHHHHHHHHHHHHH
Q psy5049         105 NDGLSLYESSHLRSANLWNRPHSPSLMA  132 (153)
Q Consensus       105 g~~RlRI~lsA~HT~edId~L~~~~L~~  132 (153)
                      ....+|++++..+|++||+++++ +|+.
T Consensus       349 ~~~~iRis~~~~~t~~dv~~~~~-~l~~  375 (376)
T TIGR01977       349 ATGTIRLSLGYFNTEEEIEKLLE-ALSE  375 (376)
T ss_pred             CCCeEEEecCCCCCHHHHHHHHH-HHhh
Confidence            45789999999999999999988 7654

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=95.58  E-value=0.069  Score=52.33  Aligned_cols=83  Identities=10%  Similarity=0.028  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc--ccccCCCCCCCCceEEEEeeCCCCHHHHHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS--IGLGVEQTALNDGLSLYESSHLRSANLWNR  124 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~HT~edId~  124 (153)
                      ++.+++.++++.|+++.|.+.|+.+.....+-++.|-+.++.++.+.+  ..|.--.+.  ...+|+|++-.+|+||||.
T Consensus       381 ~~Ia~ri~~la~~l~~~L~~~G~~~~~~~~f~~vt~~~~~~~~v~~~L~~~gI~l~~~~--~~~lrvs~~e~~T~edId~  458 (993)
T PLN02414        381 KTIAQRVHGLAGVFAAGLKKLGFQVQSLPFFDTVKVKCSDADAIADAAAKVGINLRVVD--ANTVTVSFDETTTLEDVDK  458 (993)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCccCCCCCcCeEEEecCCHHHHHHHHHHCCCeeEEec--CCeEEEEeeccCCHHHHHH
Confidence            455788999999999999999987644333457777776554444433  222111111  3579999999999999999


Q ss_pred             HHHHHHHH
Q psy5049         125 PHSPSLMA  132 (153)
Q Consensus       125 L~~~~L~~  132 (153)
                      |++ ++..
T Consensus       459 L~~-~l~~  465 (993)
T PLN02414        459 LFK-VFAG  465 (993)
T ss_pred             HHH-HHcc
Confidence            999 8853

>PRK02769 histidine decarboxylase; Provisional

Probab=95.51  E-value=0.12  Score=45.14  Aligned_cols=83  Identities=7%  Similarity=-0.069  Sum_probs=59.0

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHH
Q psy5049          44 ISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWN  123 (153)
Q Consensus        44 ~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId  123 (153)
                      ....+..++..++++|+.++|.+.|+.+...+.+.||.+-..+++.. +-|...  +. +   ..+|++++..||+|.||
T Consensus       288 ~G~~~~~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~f~~~~~~~~-~~w~l~--~~-~---~~~hi~~~~~~~~~~~~  360 (380)
T PRK02769        288 KGLRQRVQHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPCPSERIW-KKWHLA--TS-G---NQAHIITMPHHNKQQID  360 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCceEEEEcCCCHHHH-hCeeEc--cc-C---CEEEEEECCCCCHHHHH
Confidence            45577889999999999999999999877767777765544433322 212111  11 1   37999999999999999


Q ss_pred             HHHHHHHHHH
Q psy5049         124 RPHSPSLMAV  133 (153)
Q Consensus       124 ~L~~~~L~~~  133 (153)
                      .++++..+..
T Consensus       361 ~f~~dl~~~~  370 (380)
T PRK02769        361 SLIDELIFDL  370 (380)
T ss_pred             HHHHHHHHHH
Confidence            9988444433

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=95.32  E-value=0.062  Score=47.09  Aligned_cols=85  Identities=8%  Similarity=-0.048  Sum_probs=53.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHh----CCCcccCCCCCCeEEEEcCCc-------------hHHHhcc------ccccCCC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNR----LGLIVYGHRDSPVVPVLVFFF-------------SKVGQTS------IGLGVEQ  101 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~----~G~~~~~~s~SPIiPV~~g~~-------------~~~~~~a------~~i~~Pt  101 (153)
                      +.++++++++++..+|++.|++    .++.....+...+++|.+.++             ..+..+.      -.+..|.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~  395 (426)
T PRK00062        316 KEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPS  395 (426)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecC
Confidence            4447999999999999999974    365432234577888877642             1122222      2223333


Q ss_pred             CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         102 TALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       102 VP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      .+   .-++  +++.||++|||++++ +++.+..
T Consensus       396 ~~---~~~~--~~~~~t~~ei~~~~~-~l~~~l~  423 (426)
T PRK00062        396 QF---EAGF--VSAAHTDEDIEKTLE-AARKAFA  423 (426)
T ss_pred             Cc---Ccee--eeccCCHHHHHHHHH-HHHHHHH
Confidence            22   1233  468999999999998 7766553

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=95.29  E-value=0.19  Score=42.54  Aligned_cols=89  Identities=9%  Similarity=-0.010  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHh-C-CCcccCCC--CCC-eEEEEcCC--chHHHhcc----cccc------CCCC-------
Q psy5049          47 IRRISVLAHNTRYFRRKLNR-L-GLIVYGHR--DSP-VVPVLVFF--FSKVGQTS----IGLG------VEQT-------  102 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~-~-G~~~~~~s--~SP-IiPV~~g~--~~~~~~~a----~~i~------~PtV-------  102 (153)
                      ++..++..++..++++.|++ . |+.+.+..  ..| |+.+.+..  ........    +.++      .+..       
T Consensus       254 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~  333 (379)
T TIGR03402       254 EEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLR  333 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHH
Confidence            44456777788888888875 3 44443322  224 77666542  23333222    1111      1110       


Q ss_pred             ------CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         103 ------ALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       103 ------P~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                            ....+-+|++++..+|+||||++++ +|+.+.+.
T Consensus       334 ~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~-~l~~~~~~  372 (379)
T TIGR03402       334 AMGVPHTAAHGSIRFSLSRYNTEEDIDYVLE-VLPPIIAR  372 (379)
T ss_pred             HcCCChhhcCceEEEEcCCCCCHHHHHHHHH-HHHHHHHH
Confidence                  1123679999999999999999999 88766543

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=95.15  E-value=0.19  Score=42.28  Aligned_cols=83  Identities=10%  Similarity=-0.066  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc------ccccCCCCCCC-CceEEEEeeCCCCH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALN-DGLSLYESSHLRSA  119 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g-~~RlRI~lsA~HT~  119 (153)
                      ++.++.++++..++++.|++.|+.+. .+.++.+.+-+++.....+++      ....-|....+ ..-+|++++   +.
T Consensus       275 ~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~g~~~~i~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~---~~  350 (367)
T PRK02731        275 EKSRALNAEGMAWLTEFLAELGLEYI-PSVGNFILVDFDDGKDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG---TE  350 (367)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCccC-CCCceEEEEECCCCCCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC---CH
Confidence            55677778888899999998887664 456788887774322222221      11111211112 357999985   78


Q ss_pred             HHHHHHHHHHHHHHH
Q psy5049         120 NLWNRPHSPSLMAVF  134 (153)
Q Consensus       120 edId~L~~~~L~~~~  134 (153)
                      +|++++++ +|+++.
T Consensus       351 ~e~~~l~~-aL~~~~  364 (367)
T PRK02731        351 EENRRFLA-ALKEFL  364 (367)
T ss_pred             HHHHHHHH-HHHHHH
Confidence            99999998 887664

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=95.01  E-value=0.23  Score=44.18  Aligned_cols=90  Identities=11%  Similarity=0.059  Sum_probs=63.6

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhCC-CcccCC-CCCCeEEEEcCC-------chHHHhc-c---c---cccCCCCCCCCc
Q psy5049          44 ISGIRRISVLAHNTRYFRRKLNRLG-LIVYGH-RDSPVVPVLVFF-------FSKVGQT-S---I---GLGVEQTALNDG  107 (153)
Q Consensus        44 ~~~~~rr~~L~~ni~~fr~~L~~~G-~~~~~~-s~SPIiPV~~g~-------~~~~~~~-a---~---~i~~PtVP~g~~  107 (153)
                      ....+..++..+++++|.++|.+.+ |.+.+. ...+|+.+-+.+       +....+. .   .   ....|++-.|..
T Consensus       322 ~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~  401 (431)
T TIGR01788       322 EGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIV  401 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCeE
Confidence            4557778899999999999999876 666543 467787766542       1222222 1   2   235566566888


Q ss_pred             eEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         108 LSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       108 RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      -+|+++.+.++++.++++++ .+.++.
T Consensus       402 ~lR~~~~~~~~~~~~~~~~~-~~~~~~  427 (431)
T TIGR01788       402 VMRIVVREGFSRDLAELLIE-DIEAAL  427 (431)
T ss_pred             EEEEEecCCCCHHHHHHHHH-HHHHHH
Confidence            89999999999999999999 555443

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=94.92  E-value=0.1  Score=45.98  Aligned_cols=79  Identities=14%  Similarity=-0.005  Sum_probs=48.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHh----CCCc--ccCCCCCCeEEEEcC-----CchHHH--hcc-----ccccCCCCCCCC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNR----LGLI--VYGHRDSPVVPVLVF-----FFSKVG--QTS-----IGLGVEQTALND  106 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~----~G~~--~~~~s~SPIiPV~~g-----~~~~~~--~~a-----~~i~~PtVP~g~  106 (153)
                      +.+.++++++++..+|++.|++    .++.  +.+ ..+++.++++.     .+....  .+.     ..+..|.     
T Consensus       307 ~~~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~-----  380 (431)
T PRK06209        307 RDEDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRV-SGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS-----  380 (431)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEe-ecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc-----
Confidence            3456899999999999999975    4443  111 22454444442     122222  221     3333231     


Q ss_pred             ceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         107 GLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       107 ~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                          +++++.||++||+++++ +++...
T Consensus       381 ----l~is~~ht~~dId~~l~-~l~~~l  403 (431)
T PRK06209        381 ----LVVSYAHGDADIERTID-AVHGAL  403 (431)
T ss_pred             ----ccccccCCHHHHHHHHH-HHHHHH
Confidence                57889999999999998 775443

>cd00609 AAT_like Aspartate aminotransferase family

Probab=94.91  E-value=0.25  Score=40.10  Aligned_cols=84  Identities=7%  Similarity=-0.093  Sum_probs=52.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCCc---hHHHhcc----ccccCCCC--CCCCceEEEEee
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFFF---SKVGQTS----IGLGVEQT--ALNDGLSLYESS  114 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~~---~~~~~~a----~~i~~PtV--P~g~~RlRI~ls  114 (153)
                      ..+..+++++++..++++.|.+.+.... .....-++.+.+.+.   ....+..    ..+....-  +.+...+||+++
T Consensus       256 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~  335 (350)
T cd00609         256 HLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFA  335 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEee
Confidence            4577788999999999999999877531 112222333333332   1222222    22222221  247789999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy5049         115 HLRSANLWNRPHSPSLM  131 (153)
Q Consensus       115 A~HT~edId~L~~~~L~  131 (153)
                      ..  +|||+++++ +++
T Consensus       336 ~~--~~~i~~~~~-al~  349 (350)
T cd00609         336 TP--EEELEEALE-RLA  349 (350)
T ss_pred             CC--HHHHHHHHH-Hhh
Confidence            99  999999887 654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=94.81  E-value=0.09  Score=47.30  Aligned_cols=84  Identities=8%  Similarity=-0.159  Sum_probs=57.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCC--Cc-cc----CCCCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceEEE
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLG--LI-VY----GHRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLY  111 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~-~~----~~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI  111 (153)
                      +.+.+.+++++.-.+|++.|+++.  +. .+    +.+..++++|.+.+...+..+.      -.+..+.   |...+||
T Consensus       366 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~~~~~~i~~~~~~~Gvl~~~~---g~~~ir~  442 (464)
T TIGR00699       366 KRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDEAKRDKLLKKARNNGVNIGGC---GVKAIRL  442 (464)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCHHHHHHHHHHHHHCCcEEecC---CCCeEEE
Confidence            445566777777799999998653  32 11    1256889999887644333332      2223332   6688999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHH
Q psy5049         112 ESSHLRSANLWNRPHSPSLMA  132 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~  132 (153)
                      +....+|++|||.+++ +++.
T Consensus       443 ~Ppl~it~~eid~~~~-~l~~  462 (464)
T TIGR00699       443 RPMLVFQKHHADIFLE-IISK  462 (464)
T ss_pred             eCCCCCCHHHHHHHHH-HHHH
Confidence            9999999999999888 6654

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=94.79  E-value=0.11  Score=45.95  Aligned_cols=85  Identities=9%  Similarity=-0.012  Sum_probs=60.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhC-CCcccC--CCCCCeEEEEcCCchHHHhcc-----ccc-cCCCCCCCCceEEEEeeC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRL-GLIVYG--HRDSPVVPVLVFFFSKVGQTS-----IGL-GVEQTALNDGLSLYESSH  115 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~s~SPIiPV~~g~~~~~~~~a-----~~i-~~PtVP~g~~RlRI~lsA  115 (153)
                      .....+++++++..+|++.|++. ++...+  .+.++|++|.++++..+..+.     ..+ ..|   .| .-+|+...-
T Consensus       330 ~~~~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~~~~~i~~~l~e~Gi~v~~---~g-~~l~~~Ppl  405 (429)
T PRK06173        330 LESPWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPVNMATLQPRFVEHGIWVRP---FG-KLVYIMPPF  405 (429)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcccHHHHHHHHHHCCeEEEe---cC-CEEEEeCCc
Confidence            33457999999999999999864 444322  145899999998764333332     222 222   24 489999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~  134 (153)
                      ..|++|||.+++ .++...
T Consensus       406 ~it~~ei~~~~~-~l~~~l  423 (429)
T PRK06173        406 IISPDELSQLTS-GLLRVL  423 (429)
T ss_pred             cCCHHHHHHHHH-HHHHHH
Confidence            999999999998 776544

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=94.69  E-value=0.077  Score=45.78  Aligned_cols=86  Identities=3%  Similarity=-0.072  Sum_probs=54.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcc--c--CCCCCCeEEEEcCCc--hHHHhcc------ccccCCCCCCCCceEEEE
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIV--Y--GHRDSPVVPVLVFFF--SKVGQTS------IGLGVEQTALNDGLSLYE  112 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~--~--~~s~SPIiPV~~g~~--~~~~~~a------~~i~~PtVP~g~~RlRI~  112 (153)
                      ..++.+++++++..+|++.|++.+...  .  ..+....+.+.+.+.  ..+.++.      .....   |.|...+|++
T Consensus       301 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~---~~g~~~lRl~  377 (403)
T PRK05093        301 NTPEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVL---VAGPDVLRFA  377 (403)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcchhHHHHHHHHHHHCCeEEe---cCCCCEEEEe
Confidence            456788999999999999999875321  1  011133444444321  1222332      11222   2366899999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHH
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~  134 (153)
                      ++..||+++|+.+++ .|..+.
T Consensus       378 ~~~~~~~~~i~~~~~-~l~~~l  398 (403)
T PRK05093        378 PSLVIEEADIDEGLA-RFEKAV  398 (403)
T ss_pred             CCCCCCHHHHHHHHH-HHHHHH
Confidence            999999999999988 776554

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=94.64  E-value=0.24  Score=43.71  Aligned_cols=89  Identities=16%  Similarity=0.047  Sum_probs=60.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC-CcccCCC---CCCeEEEEcCCc--hHHHhcc----ccc---cCCCCCC-----CCc
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG-LIVYGHR---DSPVVPVLVFFF--SKVGQTS----IGL---GVEQTAL-----NDG  107 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G-~~~~~~s---~SPIiPV~~g~~--~~~~~~a----~~i---~~PtVP~-----g~~  107 (153)
                      .....++-+++..|+.++|.+.. +.+.+.+   .++++.+-+..-  +.+....    +++   ...+.|.     -.+
T Consensus       298 ~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~  377 (405)
T COG0520         298 MEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDA  377 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCC
Confidence            46677888899999999999765 5555543   488888877653  3444333    111   2222111     023


Q ss_pred             eEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         108 LSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       108 RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      .+|+|++-.+|+||||++++ +|+...+
T Consensus       378 ~iR~S~~~YNt~edid~l~~-aL~~~~~  404 (405)
T COG0520         378 TIRASLHLYNTEEDVDRLLE-ALKKALA  404 (405)
T ss_pred             ceEEEEeecCCHHHHHHHHH-HHHHHhh
Confidence            39999999999999999999 8877654

>PRK05367 glycine dehydrogenase; Provisional

Probab=94.59  E-value=0.25  Score=48.31  Aligned_cols=82  Identities=12%  Similarity=-0.039  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC-CchHHHhcc--ccccCCCCCCCCceEEEEeeCCCCHHHHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF-FFSKVGQTS--IGLGVEQTALNDGLSLYESSHLRSANLWN  123 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g-~~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~HT~edId  123 (153)
                      ++..++.+.++.|++++|.+.|+.+.......++.+-++ +..+..+.+  ..|..+.+.  ...+|||++-.+|++|||
T Consensus       353 ~~Ia~~~~~la~~l~~~L~~~G~~~~~~~~f~~~~~~~~~~~~~i~~~l~~~gi~~~~~~--~~~l~is~~e~~t~~did  430 (954)
T PRK05367        353 KAIARRVHRLAAILAAGLRALGLEVVHDSFFDTLTVEVGGDAAAVLARALAAGINLRRVD--DDHVGISLDETTTREDLA  430 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCeEEEeCCCCHHHHHHHHHHCCceecccc--CCEEEEEecccCCHHHHH
Confidence            466788999999999999998987643333446655554 333333322  333333332  357999999999999999


Q ss_pred             HHHHHHHH
Q psy5049         124 RPHSPSLM  131 (153)
Q Consensus       124 ~L~~~~L~  131 (153)
                      ++++ ++.
T Consensus       431 ~l~~-~l~  437 (954)
T PRK05367        431 ALLA-VFG  437 (954)
T ss_pred             HHHH-HHc
Confidence            9999 775

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=94.56  E-value=0.32  Score=42.10  Aligned_cols=89  Identities=12%  Similarity=0.061  Sum_probs=56.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCCC------CCCeEEEEcCC--chHHHhcc--c-cc--cC-----CCC--CC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHR------DSPVVPVLVFF--FSKVGQTS--I-GL--GV-----EQT--AL  104 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s------~SPIiPV~~g~--~~~~~~~a--~-~i--~~-----PtV--P~  104 (153)
                      .++.+++.++...++++.|.+. |+.+.+..      .++|+.+-+..  ...+....  . .|  +.     |.+  ..
T Consensus       307 ~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~  386 (424)
T PLN02855        307 MDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYL  386 (424)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechhhhhHHHHHHh
Confidence            3566788888999999999876 66655422      14687777642  22233221  1 22  10     000  01


Q ss_pred             C-CceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         105 N-DGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       105 g-~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      | ...+||+++..+|+|||+++++ +|+.+.+
T Consensus       387 g~~~~iRiS~~~ynt~~di~~l~~-~l~~~~~  417 (424)
T PLN02855        387 GVNASARASLYFYNTKEEVDAFIH-ALKDTIA  417 (424)
T ss_pred             CCCCeEEEEeccCCCHHHHHHHHH-HHHHHHH
Confidence            1 2569999999999999999999 8876543

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=94.54  E-value=0.22  Score=42.87  Aligned_cols=84  Identities=10%  Similarity=0.004  Sum_probs=55.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccC--CCCCCeEEEEcCCch-HHHhcc---ccccCCCCCCCCceEEEEeeCCCCH
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYG--HRDSPVVPVLVFFFS-KVGQTS---IGLGVEQTALNDGLSLYESSHLRSA  119 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~--~s~SPIiPV~~g~~~-~~~~~a---~~i~~PtVP~g~~RlRI~lsA~HT~  119 (153)
                      .++..++.+++..+|.+.|++.+.....  .+...++.+.+.+.. ......   ..+..|   .+...+||+.+..+|+
T Consensus       305 ~~~l~~~~~~~~~~l~~~L~~l~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~Gv~~~~---~~~~~iRi~p~l~~t~  381 (396)
T PRK04073        305 EEKLPERSLELGEYFKEQLKEIDNPMIKEVRGRGLFIGVELNEPARPYCEALKEEGLLCKE---THETVIRFAPPLVITK  381 (396)
T ss_pred             hcCHHHHHHHHHHHHHHHHHhhcCCcccceecceEEEEEEecchHHHHHHHHHHCCeEEec---CCCCEEEEECCcccCH
Confidence            4567889999999999999987542211  233566666664322 111111   222223   2456899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy5049         120 NLWNRPHSPSLMAV  133 (153)
Q Consensus       120 edId~L~~~~L~~~  133 (153)
                      |||+++++ .|+.+
T Consensus       382 e~i~~~~~-~l~~~  394 (396)
T PRK04073        382 EELDWAFE-KIKAV  394 (396)
T ss_pred             HHHHHHHH-HHHHH
Confidence            99999988 77654

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=94.44  E-value=0.083  Score=45.00  Aligned_cols=84  Identities=8%  Similarity=-0.018  Sum_probs=51.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcc--cC--CCCCCeEEEEcCC-chHHHhcc--ccc-cCCCCCCCCceEEEEeeCC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIV--YG--HRDSPVVPVLVFF-FSKVGQTS--IGL-GVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~--~~--~s~SPIiPV~~g~-~~~~~~~a--~~i-~~PtVP~g~~RlRI~lsA~  116 (153)
                      ..++.+++++++..++++.+.+.....  ..  .+....+-+-+.. .....+.+  ..+ ..   |.+...+|++.++.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~Gi~v~---~~~~~~lR~~~~~~  358 (375)
T PRK04260        282 LTAGFLEQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIETTADLSQLVEAARDKGLIVL---TAGTNVIRLLPPLT  358 (375)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEeccceEEEEEecCcHHHHHHHHHhCCCEEe---cCCCCEEEEcCCCc
Confidence            456788999999999999997652211  00  1122333332221 12222222  222 22   34668899999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy5049         117 RSANLWNRPHSPSLMA  132 (153)
Q Consensus       117 HT~edId~L~~~~L~~  132 (153)
                      +|++|++++++ .++.
T Consensus       359 ~t~~~i~~~l~-~l~~  373 (375)
T PRK04260        359 LTKEEIEQGIA-ILSE  373 (375)
T ss_pred             cCHHHHHHHHH-HHHH
Confidence            99999999887 6654

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=94.37  E-value=0.2  Score=42.74  Aligned_cols=86  Identities=8%  Similarity=0.003  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCC--chHHHhcc------ccccCCCCCCCCceEEEEee
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFF--FSKVGQTS------IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~--~~~~~~~a------~~i~~PtVP~g~~RlRI~ls  114 (153)
                      +...+++.++..++++.|.+.    ++.....+...++.|.+.+  ...+..+.      ..+..|   .+...+||+.+
T Consensus       298 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~---~~~~~lRi~~~  374 (400)
T PTZ00125        298 EKLAENAQRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKP---THDNIIRFAPP  374 (400)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccEEEEEEEccCcchHHHHHHHHHHHCCeEEee---cCCCEEEEECC
Confidence            456788888999999999764    2211012335666776643  12222222      222344   35678999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhc
Q psy5049         115 HLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~~  136 (153)
                      ..+|++||+++++ .++.+.+.
T Consensus       375 ~~~~~~~i~~~l~-~l~~~l~~  395 (400)
T PTZ00125        375 LVITKEQLDQALE-IIKKVLKS  395 (400)
T ss_pred             ccCCHHHHHHHHH-HHHHHHHH
Confidence            9999999999998 77665443

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=94.35  E-value=0.22  Score=43.84  Aligned_cols=84  Identities=6%  Similarity=-0.032  Sum_probs=55.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC----C-CcccCCCCCCeEEEEcCCchHHHhcc-----ccccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL----G-LIVYGHRDSPVVPVLVFFFSKVGQTS-----IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~----G-~~~~~~s~SPIiPV~~g~~~~~~~~a-----~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      .....+++++...+|++.|++.    + +.....+...++.|.+.+...+..+.     ..+..  +|.|...+|++.+.
T Consensus       337 ~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~--~~~g~~~lr~~P~l  414 (431)
T TIGR03251       337 EERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPSTADRDEVIRQLYREGVLL--LGCGERSIRFRPPL  414 (431)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCHHHHHHHHHHHHhCCeEE--ecCCCCeEEEECCc
Confidence            4457889999999999999763    2 21111244677788876544333332     22211  23456789999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLMA  132 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~  132 (153)
                      .||++|||++++ ++++
T Consensus       415 ~~t~~eid~~l~-~l~~  430 (431)
T TIGR03251       415 TVTREEIDAAID-AIRR  430 (431)
T ss_pred             cCCHHHHHHHHH-HHHh
Confidence            999999999888 6654

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PLN03032 serine decarboxylase; Provisional

Probab=94.27  E-value=0.28  Score=42.98  Aligned_cols=81  Identities=11%  Similarity=-0.036  Sum_probs=56.7

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHH
Q psy5049          44 ISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWN  123 (153)
Q Consensus        44 ~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId  123 (153)
                      +...++.++..++++||.+.|++.|+.+...+.+.+|-+-..+.+...+-|...   +.+   .-+|++++..+|++.+|
T Consensus       291 ~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~~~V~f~~~~~~~~~~~w~l~---~~~---~~~hi~vm~~~~~~~id  364 (374)
T PLN03032        291 RGIKRDVQHCMRNAHYLKDRLTEAGLTCRLNELSSTVVFERPMDEAFIKKWQLA---CEG---DIAHVVVMPNVTVEKLD  364 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCcEEECCCceEEEEcCCCcHhHhheeeec---ccC---CEEEEEECCCCCHHHHH
Confidence            456788999999999999999999998766666766543333323222222111   112   37999999999999999


Q ss_pred             HHHHHHHH
Q psy5049         124 RPHSPSLM  131 (153)
Q Consensus       124 ~L~~~~L~  131 (153)
                      ++++ -|+
T Consensus       365 ~fi~-dl~  371 (374)
T PLN03032        365 EFVE-ELV  371 (374)
T ss_pred             HHHH-HHh
Confidence            9988 443

>PLN02409 serine--glyoxylate aminotransaminase

Probab=94.26  E-value=0.4  Score=41.51  Aligned_cols=92  Identities=12%  Similarity=-0.103  Sum_probs=62.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCC---CCCeEE-EEcCCc---hHHHh-cc---ccccCCCC-CCCCceEEEEe
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHR---DSPVVP-VLVFFF---SKVGQ-TS---IGLGVEQT-ALNDGLSLYES  113 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s---~SPIiP-V~~g~~---~~~~~-~a---~~i~~PtV-P~g~~RlRI~l  113 (153)
                      -++++++.+++..++++.|.++|+.+.+..   .+|.+. +.+.+.   ..... +.   .....+.. +.+...+||+.
T Consensus       271 ~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~  350 (401)
T PLN02409        271 LENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGH  350 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcC
Confidence            467789999999999999999998765421   265443 444322   22222 11   22333333 32457899999


Q ss_pred             eCCCCHHHHHHHHHHHHHHHHhcCC
Q psy5049         114 SHLRSANLWNRPHSPSLMAVFRGGG  138 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~~~~~  138 (153)
                      +-.+|++|+..+++ +++.+....|
T Consensus       351 ~g~~~~~~~~~~~~-~~~~~l~~~g  374 (401)
T PLN02409        351 LGNVNELQLLGALA-GVEMVLKDVG  374 (401)
T ss_pred             CCCCCHHHHHHHHH-HHHHHHHHcC
Confidence            99999999999999 8887665544

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=94.25  E-value=0.35  Score=40.22  Aligned_cols=77  Identities=13%  Similarity=0.007  Sum_probs=51.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC-chHHHhcc--------ccccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF-FSKVGQTS--------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~-~~~~~~~a--------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      ..+.+++++++..++++.|.+. |+.+. .+.++++.+-+.+ .++..+..        ....|+.+   ..-+|++++ 
T Consensus       259 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~f~~~---~~~iRls~~-  333 (346)
T TIGR01141       259 IEKTVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFPRDADALFEALLEKGIIVRDLNSYPGL---PNCLRITVG-  333 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecCCCHHHHHHHHHHCCeEEEeCCCcCCC---CCeEEEecC-
Confidence            4567889999999999999887 77653 3456787777653 23222222        12223332   567999975 


Q ss_pred             CCCHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSL  130 (153)
Q Consensus       116 ~HT~edId~L~~~~L  130 (153)
                        |++|++++++ +|
T Consensus       334 --~~~~i~~~~~-~l  345 (346)
T TIGR01141       334 --TREENDRFLA-AL  345 (346)
T ss_pred             --CHHHHHHHHH-Hh
Confidence              8999999887 54

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PLN02263 serine decarboxylase

Probab=94.13  E-value=0.46  Score=43.07  Aligned_cols=85  Identities=8%  Similarity=-0.080  Sum_probs=59.0

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHH
Q psy5049          44 ISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWN  123 (153)
Q Consensus        44 ~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId  123 (153)
                      +...++.++..++++||.+.+++.|+.....+.+.+|-+-..+++...+-|....   .+   ..++++++..+|++.+|
T Consensus       358 ~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s~~V~f~~p~~~~~~~gW~L~~---~~---~~~Hivvmphv~~~~id  431 (470)
T PLN02263        358 RGFQKEVQKCLRNAHYLKDRLREAGISAMLNELSSTVVFERPKDEEFVRRWQLAC---QG---NIAHVVVMPSVTIEKLD  431 (470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCceEEEEecCchHHhhcceEEcc---CC---CcEEEEEcCCCCHHHHH
Confidence            4557888888899999999999999977666667775544333322222221111   12   24999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy5049         124 RPHSPSLMAVFR  135 (153)
Q Consensus       124 ~L~~~~L~~~~~  135 (153)
                      .+++ -|.....
T Consensus       432 ~fi~-DL~~~~~  442 (470)
T PLN02263        432 YFLK-ELVEKRS  442 (470)
T ss_pred             HHHH-HHHHHHh
Confidence            9999 5554444

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=94.09  E-value=0.38  Score=42.64  Aligned_cols=84  Identities=11%  Similarity=-0.000  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhCC--CcccC--CCCCCeEEEEcCCc------hHHHhcc-----ccccCCCCCCCCceEEEE
Q psy5049          48 RRISVLAHNTRYFRRKLNRLG--LIVYG--HRDSPVVPVLVFFF------SKVGQTS-----IGLGVEQTALNDGLSLYE  112 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~G--~~~~~--~s~SPIiPV~~g~~------~~~~~~a-----~~i~~PtVP~g~~RlRI~  112 (153)
                      +..++++++.++|++.|++..  +.+.+  .+...++.|.+-++      +.+..+.     ..+..  .|.|...+|++
T Consensus       339 ~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~--~~~~~~~lr~~  416 (441)
T PRK05769        339 GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLL--LGAGKSAIRII  416 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEE--ecCCCCEEEEe
Confidence            788999999999999998653  22211  23345777766433      2222222     22211  24467899999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHH
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~  134 (153)
                      ....||++|||++++ +++...
T Consensus       417 p~l~~t~~~id~~~~-~l~~~l  437 (441)
T PRK05769        417 PPLIITEEEADIGLE-ILEEAI  437 (441)
T ss_pred             CCCCCCHHHHHHHHH-HHHHHH
Confidence            999999999999998 776554

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=94.06  E-value=0.26  Score=43.95  Aligned_cols=86  Identities=6%  Similarity=-0.164  Sum_probs=59.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCC--Cc-cc--CCCCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceEEEEe
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLG--LI-VY--GHRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLYES  113 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~-~~--~~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI~l  113 (153)
                      +.+.+.++.++.-.+|++.|++..  +. ..  ..+..++++|.+.++..+..+.      -.+..+..| +...+||..
T Consensus       344 ~~~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~~-~~~~lr~~P  422 (442)
T TIGR03372       344 LEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDNEIGYAFAKELFQQNILVAGTLN-NAKSIRIEP  422 (442)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEeCChHHHHHHHHHHHHCCcEEeecCC-CCCEEEEEC
Confidence            445678888999999999998652  21 11  1255789999998765444433      222333333 247899999


Q ss_pred             eCCCCHHHHHHHHHHHHHH
Q psy5049         114 SHLRSANLWNRPHSPSLMA  132 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~  132 (153)
                      +..||++|+|++++ ++++
T Consensus       423 pl~~t~~~id~~~~-~l~~  440 (442)
T TIGR03372       423 PLTITIEQCALVIK-AAKD  440 (442)
T ss_pred             CcccCHHHHHHHHH-HHHH
Confidence            99999999999988 6654

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK06108 aspartate aminotransferase; Provisional

Probab=93.94  E-value=0.57  Score=39.46  Aligned_cols=83  Identities=12%  Similarity=0.068  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCC-eEEEEcCC---chHHHh-cc----ccccCCC--CCCCCceEEEEee
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSP-VVPVLVFF---FSKVGQ-TS----IGLGVEQ--TALNDGLSLYESS  114 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SP-IiPV~~g~---~~~~~~-~a----~~i~~Pt--VP~g~~RlRI~ls  114 (153)
                      ++.+++++++..++.+.|.+. |+.+.. +++. .+-+-+.+   ...... +.    +.+++..  .+.+...+|++++
T Consensus       285 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~-p~~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~  363 (382)
T PRK06108        285 AELVARLRRSRDHLVDALRALPGVEVAK-PDGAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFA  363 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcccC-CCeeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec
Confidence            567888899999999999876 665532 3333 33333432   122211 11    2222111  2455789999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy5049         115 HLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~  133 (153)
                      .  ++++++..++ .+...
T Consensus       364 ~--~~~~l~~~l~-~l~~~  379 (382)
T PRK06108        364 R--DPARLDEAVE-RLRRF  379 (382)
T ss_pred             C--CHHHHHHHHH-HHHHH
Confidence            8  8999999777 66543

>PRK08297 L-lysine aminotransferase; Provisional

Probab=93.85  E-value=0.36  Score=42.86  Aligned_cols=87  Identities=8%  Similarity=0.015  Sum_probs=59.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCC--Cccc---CCCCCCeEEEEcCCchHHHhcc-----cc-ccCCCCCCCCceEEEEe
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLG--LIVY---GHRDSPVVPVLVFFFSKVGQTS-----IG-LGVEQTALNDGLSLYES  113 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~~~---~~s~SPIiPV~~g~~~~~~~~a-----~~-i~~PtVP~g~~RlRI~l  113 (153)
                      +.+++.+++++...+|++.|++..  +...   ..+...++.|.+.+......+.     .. +..|   .|...+||+.
T Consensus       343 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~---~~~~~lr~~P  419 (443)
T PRK08297        343 EEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLPTTADRDEVIRRLWEEGVLVLP---CGERSIRFRP  419 (443)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEecCHHHHHHHHHHHHHCCEEEec---CCCCeEEEEC
Confidence            446789999999999999997641  2110   1244678888886644333332     22 2333   3556899999


Q ss_pred             eCCCCHHHHHHHHHHHHHHHHh
Q psy5049         114 SHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~~  135 (153)
                      +..||++|||++++ +++...+
T Consensus       420 ~l~~t~~eid~~l~-~l~~~l~  440 (443)
T PRK08297        420 ALTVTTEEIDAAID-ALRRALP  440 (443)
T ss_pred             CccCCHHHHHHHHH-HHHHHHH
Confidence            99999999999998 7766543

>PLN02590 probable tyrosine decarboxylase

Probab=93.78  E-value=0.32  Score=44.71  Aligned_cols=97  Identities=5%  Similarity=-0.190  Sum_probs=67.3

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC----ch----HHHhcc-------ccccCCCCCCCC
Q psy5049          43 FISGIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF----FS----KVGQTS-------IGLGVEQTALND  106 (153)
Q Consensus        43 ~~~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~----~~----~~~~~a-------~~i~~PtVP~g~  106 (153)
                      .+...++.++..++++||.+.+.+. +|.+......+||.+-+..    ++    ...++.       .+...||+=.|+
T Consensus       423 ~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~  502 (539)
T PLN02590        423 SENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGK  502 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCE
Confidence            3456888888899999999999865 5776554555666555432    11    111111       555777777888


Q ss_pred             ceEEEEeeCCCC-HHHHHHHHHHHHHHHHhcCCCc
Q psy5049         107 GLSLYESSHLRS-ANLWNRPHSPSLMAVFRGGGPG  140 (153)
Q Consensus       107 ~RlRI~lsA~HT-~edId~L~~~~L~~~~~~~~~~  140 (153)
                      .-+|+|+.+..| ++||+.+++ .+.+..+..+++
T Consensus       503 ~~lR~~i~n~~T~~~dv~~~~~-~i~~~a~~~~~~  536 (539)
T PLN02590        503 FVLRFAVGAPLTEEKHVTEAWQ-IIQKHASKFTRN  536 (539)
T ss_pred             EEEEEEecCCCCCHHHHHHHHH-HHHHHHHHhccc
Confidence            999999977766 899999998 777766655543

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=93.65  E-value=0.59  Score=40.91  Aligned_cols=89  Identities=10%  Similarity=-0.055  Sum_probs=58.6

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhC----C-CcccCCCCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceEEEE
Q psy5049          44 ISGIRRISVLAHNTRYFRRKLNRL----G-LIVYGHRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLYE  112 (153)
Q Consensus        44 ~~~~~rr~~L~~ni~~fr~~L~~~----G-~~~~~~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI~  112 (153)
                      ...++..+++.+...++++.|+.+    + +.....+...++.|.+.+...+..+.      -.+..|. ..+...+|++
T Consensus       311 i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~~~~~~~~~~~~~~~Gv~v~~~-~~~~~~lr~~  389 (412)
T TIGR02407       311 WSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECGDGDLAGKIAKAAFENGLIIETS-GPNDEVIKLL  389 (412)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHHhhCCCceEeeecceeEEEEEecChHHHHHHHHHHHHCCCEEecc-CCCCCEEEEE
Confidence            345678888889899999888742    2 21111244567778776654333332      2233443 3345789999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHH
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~  134 (153)
                      .+..||++|++++++ +++...
T Consensus       390 p~l~~t~~~i~~~~~-~l~~~l  410 (412)
T TIGR02407       390 PPLTIDEETLQQGLD-ILEQAV  410 (412)
T ss_pred             CCCCCCHHHHHHHHH-HHHHHH
Confidence            999999999999988 776554

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=93.58  E-value=0.62  Score=39.95  Aligned_cols=82  Identities=9%  Similarity=-0.048  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC---chHHHhcc----ccccCCCCCCCCceEEEEeeCCCCH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF---FSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSA  119 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~---~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~  119 (153)
                      .+.++.+.++..++.+.|++.|+.....+.+..+-+-+.+   ........    +.+++-+.+.+..-+||++.   ++
T Consensus       290 ~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~---~~  366 (380)
T PLN03026        290 EDVKNALVEERERLFGLLKEVPFLEPYPSDANFILCRVTSGRDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG---KP  366 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCeECCCCCeEEEEECCCCCCHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC---CH
Confidence            4567788888899999999887532234557776666652   22222221    33443222445678999988   78


Q ss_pred             HHHHHHHHHHHHH
Q psy5049         120 NLWNRPHSPSLMA  132 (153)
Q Consensus       120 edId~L~~~~L~~  132 (153)
                      +|++++++ +++.
T Consensus       367 ~~~~~l~~-al~~  378 (380)
T PLN03026        367 EHTDALME-ALKQ  378 (380)
T ss_pred             HHHHHHHH-HHHH
Confidence            89999888 7764

>PRK06541 hypothetical protein; Provisional

Probab=93.37  E-value=0.42  Score=42.67  Aligned_cols=88  Identities=13%  Similarity=0.037  Sum_probs=57.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCC-Cccc--CCCCCCeEEEEcCCch------------HHH--hcc-----c-cccCCC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLG-LIVY--GHRDSPVVPVLVFFFS------------KVG--QTS-----I-GLGVEQ  101 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G-~~~~--~~s~SPIiPV~~g~~~------------~~~--~~a-----~-~i~~Pt  101 (153)
                      ..+..+++++++..+|++.|++.. ..+.  ..+...++.|.+.++.            ...  .+.     . .+..| 
T Consensus       343 ~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~-  421 (460)
T PRK06541        343 EREGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRA-  421 (460)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEe-
Confidence            445688999999999999998762 2110  1133456666653211            001  111     2 22334 


Q ss_pred             CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         102 TALNDGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       102 VP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      +|.|...+||+....||++|||.+++ +++...
T Consensus       422 ~~~g~~~lrl~Ppl~~t~~~id~~~~-~l~~~l  453 (460)
T PRK06541        422 DDRGDPVVQLAPPLISGQEEFDEIEQ-ILRSVL  453 (460)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHH-HHHHHH
Confidence            57778899999999999999999998 776544

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=92.98  E-value=0.71  Score=39.42  Aligned_cols=86  Identities=12%  Similarity=0.050  Sum_probs=51.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC--Cc-ccC--CCCCCeEEEEcCCc-hHHHhcc--ccccCCCCCCCCceEEEEeeCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG--LI-VYG--HRDSPVVPVLVFFF-SKVGQTS--IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G--~~-~~~--~s~SPIiPV~~g~~-~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      .++..++++++..+|++.|++..  +. +..  .+...++.+-+..+ .......  ..+.  ++|.+...+||+.+..+
T Consensus       293 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~l~~~GV~--~~p~~~~~lR~~p~~~~  370 (389)
T PRK01278        293 APGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVVPNRDLVQALRDEGLL--TVGAGDNVVRLLPPLII  370 (389)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhCCCceeeEecccEEEEEEEecCHHHHHHHHHHCCeE--EeecCCCEEEEeCCccc
Confidence            45678899999999999998642  11 100  11122333323221 2222111  2221  23446789999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy5049         118 SANLWNRPHSPSLMAVF  134 (153)
Q Consensus       118 T~edId~L~~~~L~~~~  134 (153)
                      |++||+++++ .|+...
T Consensus       371 ~~~~i~~~l~-~l~~~l  386 (389)
T PRK01278        371 TEEEIDEALE-RLERAA  386 (389)
T ss_pred             CHHHHHHHHH-HHHHHH
Confidence            9999999888 776544

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=92.69  E-value=0.65  Score=40.73  Aligned_cols=87  Identities=9%  Similarity=0.014  Sum_probs=58.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhCC--Cccc--CCCCCCeEEEEcCCc--hHHHhcc------ccccCCCCCCCCceEEE
Q psy5049          44 ISGIRRISVLAHNTRYFRRKLNRLG--LIVY--GHRDSPVVPVLVFFF--SKVGQTS------IGLGVEQTALNDGLSLY  111 (153)
Q Consensus        44 ~~~~~rr~~L~~ni~~fr~~L~~~G--~~~~--~~s~SPIiPV~~g~~--~~~~~~a------~~i~~PtVP~g~~RlRI  111 (153)
                      .+.++++++++++..+|++.|+++.  +++.  ..+...++.|.+..+  ..+..+.      -.+.+   |.|...+|+
T Consensus       303 ~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~---~~g~~~lRl  379 (408)
T PRK04612        303 LASPQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLL---QAGPDVLRF  379 (408)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCchhhHHHHHHHHHHHCCeEEe---eCCCCEEEE
Confidence            3457899999999999999998642  1111  124456777776432  2222222      22233   346789999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         112 ESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      +.+..+|++|||++++ .++...
T Consensus       380 ~Ppl~it~eeid~~l~-~l~~~l  401 (408)
T PRK04612        380 VPALNLTDAELADGLA-RLRLAL  401 (408)
T ss_pred             cCCccCCHHHHHHHHH-HHHHHH
Confidence            9999999999999988 775544

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=92.29  E-value=0.24  Score=44.93  Aligned_cols=80  Identities=6%  Similarity=-0.023  Sum_probs=51.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEE------EEcC----CchH-----------HHhcc-----ccc
Q psy5049          44 ISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVP------VLVF----FFSK-----------VGQTS-----IGL   97 (153)
Q Consensus        44 ~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiP------V~~g----~~~~-----------~~~~a-----~~i   97 (153)
                      .+.++..++++++..+|++.|++.       .++||++      ++++    ++..           +..+.     ..+
T Consensus       384 i~~~~l~~~~~~~g~~l~~~L~~l-------~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv  456 (504)
T PLN02760        384 YKERNIPEHVNKIAPRFQDGIKAF-------SGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGM  456 (504)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHH-------hcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCc
Confidence            345578999999999999999874       1134443      2332    3211           11121     222


Q ss_pred             -cCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049          98 -GVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus        98 -~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                       ..|   .| ..+|++....||++|||.+++ +++...+
T Consensus       457 l~~~---~g-~~lrl~Ppl~it~eeid~~~~-~l~~al~  490 (504)
T PLN02760        457 LVRV---AG-DNIMMSPPLIITPEEVDELIS-IYGKALK  490 (504)
T ss_pred             EEEe---cC-CEEEEECCCCCCHHHHHHHHH-HHHHHHH
Confidence             233   23 578999999999999999998 7765543

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=91.99  E-value=1.7  Score=36.44  Aligned_cols=81  Identities=15%  Similarity=0.064  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEc-CCchHHHhcc----ccc-cCCCCCCCCceEEEEeeCCCCHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV-FFFSKVGQTS----IGL-GVEQTALNDGLSLYESSHLRSAN  120 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~-g~~~~~~~~a----~~i-~~PtVP~g~~RlRI~lsA~HT~e  120 (153)
                      ...+++++++..++.+.|++.|+...  +...+...+- .+.....+.+    +.+ .|.    ....+||++++  +++
T Consensus       242 ~~~~~~~~~~r~~l~~~L~~~~~~~~--~~~~~f~~~~~~~~~~~~~~l~~~gi~v~~f~----~~~~iRis~~~--~~~  313 (330)
T PRK05664        242 RRQRERLLAASQRLAALLRRHGLTPA--GGCALFQWVRTEDAAALHEFLARRGILTRLFE----QPASLRFGLPA--DEA  313 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCccc--CCcceEEEEecCCHHHHHHHHHHCCeEEEECC----CCCeEEEECCC--CHH
Confidence            56788999999999999999887542  2233333332 2333333322    222 232    23689999997  689


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy5049         121 LWNRPHSPSLMAVFRG  136 (153)
Q Consensus       121 dId~L~~~~L~~~~~~  136 (153)
                      |++++.+ +|+.+.+.
T Consensus       314 ~~~~l~~-al~~~~~~  328 (330)
T PRK05664        314 DWARLDQ-ALLAYRKE  328 (330)
T ss_pred             HHHHHHH-HHHHHHhh
Confidence            9999999 88877654

>PLN02724 Molybdenum cofactor sulfurase

Probab=91.94  E-value=0.72  Score=44.01  Aligned_cols=89  Identities=16%  Similarity=0.128  Sum_probs=59.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCC-------CcccCCC--------CCCeEEEEcCCch-------HHHhcc----ccc-
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLG-------LIVYGHR--------DSPVVPVLVFFFS-------KVGQTS----IGL-   97 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G-------~~~~~~s--------~SPIiPV~~g~~~-------~~~~~a----~~i-   97 (153)
                      ..+..++++++...|+.+.|.++.       +.+++..        ..||+++-+.+..       .+..++    +.+ 
T Consensus       337 g~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR  416 (805)
T PLN02724        337 TISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLR  416 (805)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEe
Confidence            346778889999999999998763       4444422        4689888776522       122221    000 


Q ss_pred             -----cCCCCC-----------------------------CCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049          98 -----GVEQTA-----------------------------LNDGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus        98 -----~~PtVP-----------------------------~g~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                           .++.+-                             ..++-+|+|+...+|.||||++++ +|+...
T Consensus       417 ~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~-~l~~~~  486 (805)
T PLN02724        417 TGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFID-FIISSF  486 (805)
T ss_pred             eccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHH-HHHHHh
Confidence                 112110                             014789999999999999999999 887755

>PLN02452 phosphoserine transaminase

Probab=91.91  E-value=2.2  Score=37.07  Aligned_cols=89  Identities=7%  Similarity=-0.181  Sum_probs=61.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCC---CCCC-eEEEEcCCchHHHhcc------ccccCCCCCCCCceEEEEee
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGH---RDSP-VVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~---s~SP-IiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI~ls  114 (153)
                      -+.+.++-+++..++++.|.+. |+.....   ..|+ ++++.+.+.+...++.      ..+.+|. -...+.+|+++=
T Consensus       264 l~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~~~~~~f~~~~~~~g~~~~~G-~r~~gg~R~s~y  342 (365)
T PLN02452        264 LKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGSELEAEFVKEAAKAGMVQLKG-HRSVGGMRASIY  342 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCchhHHHHHHHHHHCCCcccCC-ccccCceEEECc
Confidence            3677788889999999999874 6621111   1244 8888877754333332      4445555 222445999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhc
Q psy5049         115 HLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~~  136 (153)
                      .+.+.|+++.|++ +++...+.
T Consensus       343 na~~~~~v~~L~~-~m~~f~~~  363 (365)
T PLN02452        343 NAMPLAGVEKLVA-FMKDFQAK  363 (365)
T ss_pred             CCCCHHHHHHHHH-HHHHHHHh
Confidence            9999999999999 88877653

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=91.86  E-value=0.39  Score=42.62  Aligned_cols=85  Identities=9%  Similarity=-0.037  Sum_probs=51.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCC-Cc----ccCCC---CCCeEEEEcCCchHHHhcc-----ccc-cCCCCCCCCceEE
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLG-LI----VYGHR---DSPVVPVLVFFFSKVGQTS-----IGL-GVEQTALNDGLSL  110 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G-~~----~~~~s---~SPIiPV~~g~~~~~~~~a-----~~i-~~PtVP~g~~RlR  110 (153)
                      +.+.+.++++++..++++.|++++ +.    +-|.+   ..++++...++...+..+.     ..+ ..+   . ...+|
T Consensus       340 ~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~---~-~~~lr  415 (442)
T PRK13360        340 EREGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRY---T-GDILA  415 (442)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEe---c-CCEEE
Confidence            345688999999999999998653 21    11111   1233332222222222222     222 222   2 36899


Q ss_pred             EEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         111 YESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       111 I~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      |+....||++|||++++ ++++..
T Consensus       416 ~~Ppl~~t~~eid~~~~-~l~~~l  438 (442)
T PRK13360        416 LSPPLIIEEAQIDELFD-ILAQAL  438 (442)
T ss_pred             EeCCCccCHHHHHHHHH-HHHHHH
Confidence            99999999999999998 776554

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=91.84  E-value=1.8  Score=36.57  Aligned_cols=79  Identities=10%  Similarity=-0.070  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhCC-CcccCCCCCCeEEEEcCCchHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHHH
Q psy5049          48 RRISVLAHNTRYFRRKLNRLG-LIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANLW  122 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~G-~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~edI  122 (153)
                      +.++.++++-.++.+.|++.+ +.+. .+.+.-+-+-+.+.+...+..    +.++.-.-+.+..-+||+++   ++||+
T Consensus       267 ~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~---~~e~~  342 (354)
T PRK04635        267 FQVLDLNAQGARLQAALSMYGGAKVL-EGNGNYVLAKFDDVDAVFKALWDAGIVARAYKDPRLANCIRFSFS---NRAET  342 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCceEC-CCCCcEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHH
Confidence            345667777788999999876 5543 344443323233433333322    33332111333467999985   78999


Q ss_pred             HHHHHHHHH
Q psy5049         123 NRPHSPSLM  131 (153)
Q Consensus       123 d~L~~~~L~  131 (153)
                      +++++ +|+
T Consensus       343 ~~l~~-al~  350 (354)
T PRK04635        343 DKLIG-LIR  350 (354)
T ss_pred             HHHHH-HHH
Confidence            99998 665

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=91.81  E-value=1.2  Score=37.56  Aligned_cols=80  Identities=11%  Similarity=-0.002  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCchHHHhcc----ccccCCCCC-CCCceEEEEeeCCCCHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQTA-LNDGLSLYESSHLRSAN  120 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~PtVP-~g~~RlRI~lsA~HT~e  120 (153)
                      .+.++.++++-.++.+.|.+. |+.....+.+.-+-+-+.+.+...+..    +.++.+... ....-+||++.   +++
T Consensus       265 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~~~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~---~~~  341 (351)
T PRK01688        265 RERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFTASSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG---TRE  341 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCCHHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC---CHH
Confidence            345667777788899999887 443123455665555444434333322    444443322 22467999987   789


Q ss_pred             HHHHHHHHHH
Q psy5049         121 LWNRPHSPSL  130 (153)
Q Consensus       121 dId~L~~~~L  130 (153)
                      |++++++ +|
T Consensus       342 e~~~l~~-al  350 (351)
T PRK01688        342 ECQRVID-AL  350 (351)
T ss_pred             HHHHHHH-hh
Confidence            9999988 65

>PLN02880 tyrosine decarboxylase

Probab=91.70  E-value=0.68  Score=41.79  Aligned_cols=88  Identities=7%  Similarity=-0.159  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCc----h----HHHhcc-------ccccCCCCCCCCceEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFF----S----KVGQTS-------IGLGVEQTALNDGLSL  110 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~----~----~~~~~a-------~~i~~PtVP~g~~RlR  110 (153)
                      .++.++..+++++|.+.+.+. ++.+....+.+|+.+-+...    +    ...++.       .....+++=.|+.-+|
T Consensus       379 ~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR  458 (490)
T PLN02880        379 QSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLR  458 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEE
Confidence            444444449999999999754 77776555677777665431    1    011111       3334445557889999


Q ss_pred             EEeeCCCCH-HHHHHHHHHHHHHHHh
Q psy5049         111 YESSHLRSA-NLWNRPHSPSLMAVFR  135 (153)
Q Consensus       111 I~lsA~HT~-edId~L~~~~L~~~~~  135 (153)
                      +|++..+|. +|++.+++ .+.++.+
T Consensus       459 ~~~~n~~tt~~di~~~~~-~i~~~~~  483 (490)
T PLN02880        459 FAVGAPLTEERHVTAAWK-VLQDEAS  483 (490)
T ss_pred             EEecCCCCCHHHHHHHHH-HHHHHHH
Confidence            999999996 99999988 6665543

>TIGR02006 IscS cysteine desulfurase IscS

Probab=91.69  E-value=2.2  Score=36.64  Aligned_cols=29  Identities=0%  Similarity=-0.026  Sum_probs=25.2

Q ss_pred             CceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         106 DGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       106 ~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      .+.+|++++..+|+||||++++ +|+.+.+
T Consensus       348 ~~~vR~S~~~~~t~edid~l~~-~l~~~~~  376 (402)
T TIGR02006       348 HSSIRFTIGRFTTEEEIDYAVK-LVKSAID  376 (402)
T ss_pred             CceEEEEecCCCCHHHHHHHHH-HHHHHHH
Confidence            4789999999999999999999 8766553

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=91.55  E-value=2.2  Score=35.82  Aligned_cols=82  Identities=7%  Similarity=-0.121  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC-chHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF-FSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANL  121 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~-~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~ed  121 (153)
                      +..+++++++..++.+.|.+.|+.+. .+.+..+.+-++. .....+..    +.+++-.......-+||+++   +++|
T Consensus       272 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~~i~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~  347 (359)
T PRK03158        272 KECVEKNAEGLEQYYAFCKEYGLFYY-PSQTNFIFVDTGRDANELFEALLKKGYIVRSGAALGFPTGVRITIG---LKEQ  347 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeeC-CCcCcEEEEECCCCHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---CHHH
Confidence            34456677788888888888887653 3556666665542 22222222    22222111112357999987   8999


Q ss_pred             HHHHHHHHHHHH
Q psy5049         122 WNRPHSPSLMAV  133 (153)
Q Consensus       122 Id~L~~~~L~~~  133 (153)
                      ++++++ +|+.+
T Consensus       348 ~~~l~~-al~~~  358 (359)
T PRK03158        348 NDKIIE-LLKEL  358 (359)
T ss_pred             HHHHHH-HHHHh
Confidence            999998 77654

>PRK05764 aspartate aminotransferase; Provisional

Probab=91.50  E-value=2.6  Score=35.69  Aligned_cols=81  Identities=11%  Similarity=0.030  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCC-eEEEEcCCc--------hHHH-hcc--------ccccCCCCCCCCc
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSP-VVPVLVFFF--------SKVG-QTS--------IGLGVEQTALNDG  107 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SP-IiPV~~g~~--------~~~~-~~a--------~~i~~PtVP~g~~  107 (153)
                      .+.+++++++..++++.|.+. |+.+.. ++.. .+-+-+...        .+.. .+.        .+..|+.    ..
T Consensus       291 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~----~~  365 (393)
T PRK05764        291 EEMRQAFEERRDLMVDGLNEIPGLECPK-PEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGA----PG  365 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCcccC-CCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCC----CC
Confidence            467888889999999999987 776533 3332 222222211        2222 111        2223332    47


Q ss_pred             eEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         108 LSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       108 RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      .+||++.  +++++++..++ .+..+.+
T Consensus       366 ~vRis~~--~~~~~~~~~i~-~l~~~~~  390 (393)
T PRK05764        366 YVRLSYA--TSLEDLEEGLE-RIERFLE  390 (393)
T ss_pred             EEEEEec--CCHHHHHHHHH-HHHHHHH
Confidence            8999976  58999999888 7766544

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=91.47  E-value=0.7  Score=40.99  Aligned_cols=88  Identities=8%  Similarity=0.082  Sum_probs=51.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhC--CCcccC--CCCCCeEEEEc--------CCchHHHhcc-----ccccCCCCCCCCc
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRL--GLIVYG--HRDSPVVPVLV--------FFFSKVGQTS-----IGLGVEQTALNDG  107 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~--G~~~~~--~s~SPIiPV~~--------g~~~~~~~~a-----~~i~~PtVP~g~~  107 (153)
                      +.+++.++++++..+|++.|++.  .+.+.+  .+....+-+.+        ++...+..+.     ..+...  +.+..
T Consensus       324 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~--~~~~~  401 (445)
T PRK08593        324 EDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVII--AVAGN  401 (445)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEe--ccCCC
Confidence            44578999999999999999863  111100  01111122222        1222233332     222111  11347


Q ss_pred             eEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         108 LSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       108 RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      ++|++.+..||++|||++++ +++...+
T Consensus       402 ~lr~~p~l~~t~~~id~~~~-~l~~~l~  428 (445)
T PRK08593        402 VLRFQPPLVITYEQLDTALN-TIEQAFT  428 (445)
T ss_pred             EEEEECCCccCHHHHHHHHH-HHHHHHH
Confidence            89999999999999999998 7765543

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=91.45  E-value=0.23  Score=45.29  Aligned_cols=57  Identities=14%  Similarity=0.024  Sum_probs=39.7

Q ss_pred             HHHHHHHhHHHHHHHhhhcccEEe-ecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcc
Q psy5049           3 LISVLAQNTRYFRRKLNRLGLILY-VLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIV   71 (153)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~   71 (153)
                      ..+++.+|+++|+++|++.||.+. |..++|+.|+    .....+        .....+.+.|.+.|+.+
T Consensus       340 y~~~l~~Na~~La~~L~~~G~~vv~ggTdshIV~V----~lg~~~--------~~g~~a~~~L~e~GI~v  397 (493)
T PRK13580        340 YAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLI----DVTSFG--------LTGRQAESALLDAGIVT  397 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEE----EeCCHH--------HHHHHHHHHHHHCCeEE
Confidence            467899999999999999999985 4456777774    222221        11234566788888765

>PRK09082 methionine aminotransferase; Validated

Probab=91.45  E-value=1.3  Score=37.89  Aligned_cols=79  Identities=8%  Similarity=-0.111  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC-----CchHHHh-cc--------ccccCCCCCCCCceEEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF-----FFSKVGQ-TS--------IGLGVEQTALNDGLSLYE  112 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g-----~~~~~~~-~a--------~~i~~PtVP~g~~RlRI~  112 (153)
                      .++++.++++..++.+.|++.|+.+.....+..+.+-+.     +...... ++        +...|...|.+...+||+
T Consensus       289 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~  368 (386)
T PRK09082        289 LELPAFYQAKRDRFRAALANSRFKLLPCEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLC  368 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEE
Confidence            445777889999999999988876533222334444432     1222222 11        222454445667789999


Q ss_pred             eeCCCCHHHHHHHHH
Q psy5049         113 SSHLRSANLWNRPHS  127 (153)
Q Consensus       113 lsA~HT~edId~L~~  127 (153)
                      ++.  ++++++..++
T Consensus       369 ~~~--~~~~l~~~~~  381 (386)
T PRK09082        369 FAK--QEETLDAAAE  381 (386)
T ss_pred             ecC--CHHHHHHHHH
Confidence            974  6888888665

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=91.39  E-value=0.9  Score=44.77  Aligned_cols=84  Identities=13%  Similarity=0.148  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCC-CCC-----eEEEE-c----C-CchHHHh-cc-ccccCCCC--CCCCceEEE
Q psy5049          48 RRISVLAHNTRYFRRKLNRLGLIVYGHR-DSP-----VVPVL-V----F-FFSKVGQ-TS-IGLGVEQT--ALNDGLSLY  111 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s-~SP-----IiPV~-~----g-~~~~~~~-~a-~~i~~PtV--P~g~~RlRI  111 (153)
                      +..++...|++|++++|.+ ++.+.-.+ ..|     |+.+- +    | +.....+ +. ..|-.|++  |. ...+||
T Consensus       806 ~~a~~a~~nAnYl~~rL~~-~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~~~pv-~~~lmi  883 (993)
T PLN02414        806 DASKIAILNANYMAKRLEG-HYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTMSWPV-PGTLMI  883 (993)
T ss_pred             HHHHHHHHHHHHHHHHHHh-hCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEeeecccc-CCEEEE
Confidence            3467788899999999986 55442111 112     22222 0    0 0011111 11 33434433  43 678999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         112 ESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      +.|-.+|++|||++++ ++..+.
T Consensus       884 epTE~~skeelDrf~~-al~~i~  905 (993)
T PLN02414        884 EPTESESKAELDRFCD-ALISIR  905 (993)
T ss_pred             EeeeeCCHHHHHHHHH-HHHHHH
Confidence            9999999999999999 665444

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=91.25  E-value=2.3  Score=35.92  Aligned_cols=78  Identities=6%  Similarity=-0.075  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEE-EEcCCch-HHHhcc----ccccC--CCCCCCCceEEEEeeCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVP-VLVFFFS-KVGQTS----IGLGV--EQTALNDGLSLYESSHLRS  118 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiP-V~~g~~~-~~~~~a----~~i~~--PtVP~g~~RlRI~lsA~HT  118 (153)
                      ...++.++++..++.+.|.+.|+.+. .+++.++- +.++.+. ...+..    +.+.+  +..+.+...+||++++  +
T Consensus       269 ~~~~~~~~~~~~~~~~~L~~~g~~~~-~p~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~--~  345 (357)
T TIGR03539       269 AEQKARYAARRAQLKPALEKAGFRID-HSEAGLYLWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA--T  345 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCc-CCCccEEEEEECCCCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC--C
Confidence            45677888899999999999887753 34455433 3333322 122211    22221  1134566799999987  5


Q ss_pred             HHHHHHHHH
Q psy5049         119 ANLWNRPHS  127 (153)
Q Consensus       119 ~edId~L~~  127 (153)
                      ++++++.++
T Consensus       346 ~~~i~~~~~  354 (357)
T TIGR03539       346 DERIAAAVA  354 (357)
T ss_pred             HHHHHHHHH
Confidence            899998766

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=91.13  E-value=1.3  Score=36.97  Aligned_cols=78  Identities=17%  Similarity=0.019  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHH-hCCCcccCCCCCCeEEEEcCC--chHHHhcc----cc----ccCCCCCCCCceEEEEeeCCCC
Q psy5049          50 ISVLAHNTRYFRRKLN-RLGLIVYGHRDSPVVPVLVFF--FSKVGQTS----IG----LGVEQTALNDGLSLYESSHLRS  118 (153)
Q Consensus        50 r~~L~~ni~~fr~~L~-~~G~~~~~~s~SPIiPV~~g~--~~~~~~~a----~~----i~~PtVP~g~~RlRI~lsA~HT  118 (153)
                      .+++.+.....++.+. .+++.+. .+.++.+.+-+..  .....+..    ..    ..|+  ..+...+||+++   +
T Consensus       272 ~~~~~~~~~~~r~~l~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~gv~v~~~~~f~--~~~~~~lRis~~---~  345 (361)
T PRK00950        272 IEKSIEHGIKSREYLYNELPFKVY-PSEANFVLVDVTPMTAKEFCEELLKRGVIVRDCTSFR--GLGDYYIRVSIG---T  345 (361)
T ss_pred             HHHHHHHHHHHHHHHHhhcCeeEC-CCcceEEEEECCCCCHHHHHHHHHHCCEEEeeCCccC--CCCCCeEEEECC---C
Confidence            3444444444444443 2334432 3556776666532  22222221    22    2343  234678999987   7


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy5049         119 ANLWNRPHSPSLMAVF  134 (153)
Q Consensus       119 ~edId~L~~~~L~~~~  134 (153)
                      .+|++++++ +|+.+.
T Consensus       346 ~~~~~~l~~-~L~~il  360 (361)
T PRK00950        346 FEENERFLE-ILKEIV  360 (361)
T ss_pred             HHHHHHHHH-HHHHHh
Confidence            899999998 777653

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=90.99  E-value=0.55  Score=41.66  Aligned_cols=87  Identities=8%  Similarity=0.060  Sum_probs=52.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhC--CCcccC--CCCCCeEEEEcCCc--------hHHHhcc-----ccc-cCCCCCCCC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRL--GLIVYG--HRDSPVVPVLVFFF--------SKVGQTS-----IGL-GVEQTALND  106 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~--G~~~~~--~s~SPIiPV~~g~~--------~~~~~~a-----~~i-~~PtVP~g~  106 (153)
                      +.+++.++++++..+|++.|++.  .+.+.+  .+..-++.|-+.++        ..+..+.     ..+ ..+   .+.
T Consensus       321 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~---~~~  397 (443)
T PRK08360        321 EEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTF---FSG  397 (443)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEee---cCC
Confidence            34568999999999999999864  222211  11122333333221        1222222     222 222   135


Q ss_pred             ceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         107 GLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       107 ~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      .++|++.+..||++|||++++ +++...+
T Consensus       398 ~~lr~~P~l~~t~~~id~~~~-~l~~~l~  425 (443)
T PRK08360        398 NVLRIQPPLTIEKEVLDEGLD-ILEEAIE  425 (443)
T ss_pred             CEEEEeCCCCCCHHHHHHHHH-HHHHHHH
Confidence            889999999999999999998 7765443

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=90.98  E-value=2.1  Score=36.17  Aligned_cols=80  Identities=10%  Similarity=-0.082  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE-cCCch-HHHhcc----ccccCCC--CCCCCceEEEEeeCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL-VFFFS-KVGQTS----IGLGVEQ--TALNDGLSLYESSHLRS  118 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~-~g~~~-~~~~~a----~~i~~Pt--VP~g~~RlRI~lsA~HT  118 (153)
                      .+.++.++++..++.+.|++.|+.+. .+++..+-++ +..+. ......    +.+.+..  .+.+...+||++++  +
T Consensus       275 ~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~--~  351 (364)
T PRK07865        275 REQRERYARRRAVLRPALEAAGFRVD-HSEAGLYLWATRGEDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA--T  351 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccc-CCCccEEEEEeCCCCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC--C
Confidence            45678888999999999999887653 3445543222 22221 212211    2222211  24456789999986  5


Q ss_pred             HHHHHHHHHHHH
Q psy5049         119 ANLWNRPHSPSL  130 (153)
Q Consensus       119 ~edId~L~~~~L  130 (153)
                      ++++++.++ .|
T Consensus       352 ~~~~~~~~~-~l  362 (364)
T PRK07865        352 DERIAAAVE-RL  362 (364)
T ss_pred             HHHHHHHHH-Hh
Confidence            899999776 44

>PRK09105 putative aminotransferase; Provisional

Probab=90.93  E-value=3.2  Score=35.54  Aligned_cols=83  Identities=14%  Similarity=-0.027  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC-CchHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF-FFSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANL  121 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g-~~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~ed  121 (153)
                      .+.+++++++..++.+.|++.|+.+. .+++..+-+-++ +.....+..    +.++.. .+....-+||++.   ++++
T Consensus       282 ~~~~~~~~~~r~~l~~~L~~~g~~~~-~~~~~f~~~~~~~~~~~l~~~L~~~gI~v~~~-~~~~~~~~Ris~~---~~~~  356 (370)
T PRK09105        282 PQRRAENAAVREDTIAWLKKKGYKCT-PSQANCFMVDVKRPAKAVADAMAKQGVFIGRS-WPIWPNWVRVTVG---SEEE  356 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCcC-CCCCcEEEEeCCCCHHHHHHHHHHCCcEEecC-CCCCCCeEEEEcC---CHHH
Confidence            45567888899999999999898764 344554433333 222222221    223211 1223578999977   6899


Q ss_pred             HHHHHHHHHHHHHh
Q psy5049         122 WNRPHSPSLMAVFR  135 (153)
Q Consensus       122 Id~L~~~~L~~~~~  135 (153)
                      ++++++ +++.+.+
T Consensus       357 ~~~l~~-al~~~~~  369 (370)
T PRK09105        357 MAAFRS-AFAKVMR  369 (370)
T ss_pred             HHHHHH-HHHHHhh
Confidence            999998 8877653

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=90.92  E-value=2.3  Score=35.65  Aligned_cols=82  Identities=13%  Similarity=-0.008  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCchHHHhcc----ccccCCCC--CCCCceEEEEeeCCCCH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQT--ALNDGLSLYESSHLRSA  119 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~PtV--P~g~~RlRI~lsA~HT~  119 (153)
                      .+.+++++++..++.+.|++. |+.+. .+.+..+-+-+.+.....+.+    +.+++-..  +.+..-+||+++   +.
T Consensus       267 ~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~  342 (356)
T PRK04870        267 DAQAAQLRAERTRLAAALAALPGVTVF-PSAANFILVRVPDAAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG---TP  342 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC---CH
Confidence            456778888888999999887 66543 345666555555434333332    22221111  234568999988   78


Q ss_pred             HHHHHHHHHHHHHH
Q psy5049         120 NLWNRPHSPSLMAV  133 (153)
Q Consensus       120 edId~L~~~~L~~~  133 (153)
                      ++++++++ +|+.+
T Consensus       343 ~~~~~l~~-al~~~  355 (356)
T PRK04870        343 EENAQFLA-ALKAA  355 (356)
T ss_pred             HHHHHHHH-HHHHh
Confidence            99999988 77653

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=90.87  E-value=1.2  Score=39.53  Aligned_cols=85  Identities=8%  Similarity=-0.121  Sum_probs=58.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhC-CCcccC--CCCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceEEEEeeC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRL-GLIVYG--HRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      +.++++++++++..+|++.|++. .+...+  .+...+++|.+.++..+..+.      -.+..|.   | .-+|++..-
T Consensus       328 ~~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~~~~~~~~~l~~~Gl~~~~~---g-~~i~~~Ppl  403 (428)
T PRK07986        328 ESGDWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPVNMAALQRFFVEQGVWIRPF---G-KLIYLMPPY  403 (428)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCcccHHHHHHHHHHCCcEEEec---C-CEEEEeCCC
Confidence            44578999999999999999875 222111  134789999887654333332      2223332   4 479999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~  134 (153)
                      .+|+|||+++++ .+++..
T Consensus       404 ~it~~ei~~~~~-~l~~~l  421 (428)
T PRK07986        404 IILPEQLQRLTA-AVNRAV  421 (428)
T ss_pred             CCCHHHHHHHHH-HHHHHH
Confidence            999999999998 776544

>PRK07681 aspartate aminotransferase; Provisional

Probab=90.83  E-value=2.2  Score=36.64  Aligned_cols=82  Identities=6%  Similarity=-0.023  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc---hHHH-hcc----ccccCCC---CCCCCceEEEEeeC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF---SKVG-QTS----IGLGVEQ---TALNDGLSLYESSH  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~---~~~~-~~a----~~i~~Pt---VP~g~~RlRI~lsA  115 (153)
                      .+.++.++++..++.+.|++.|+.+.....+..+-+-+.+.   .+.. .+.    +.+ -|.   .+.+...+||++. 
T Consensus       292 ~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v-~pg~~f~~~~~~~iRis~~-  369 (399)
T PRK07681        292 EKNRGIYQERRDTLVDGFRTFGWNVDKPAGSMFVWAEIPKGWTSLSFAYALMDRANVVV-TPGHAFGPHGEGFVRIALV-  369 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccCCCeeeEEEEECCCCCCHHHHHHHHHHhCCEEE-eCChhhCcCCCCeEEEEec-
Confidence            55677888999999999999887653233355555545432   1111 111    222 121   1234568999998 


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLMA  132 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~  132 (153)
                       +++++++..++ .|..
T Consensus       370 -~~~~~~~~~l~-~l~~  384 (399)
T PRK07681        370 -QDEEVLQQAVE-NIRN  384 (399)
T ss_pred             -CCHHHHHHHHH-HHHH
Confidence             57899999766 5543

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=90.45  E-value=3.8  Score=34.24  Aligned_cols=80  Identities=10%  Similarity=0.132  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----ccc----cCCCCCCCCceEEEEeeCCCCH
Q psy5049          48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----IGL----GVEQTALNDGLSLYESSHLRSA  119 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i----~~PtVP~g~~RlRI~lsA~HT~  119 (153)
                      +.++.++++-.++.+.|++.|+.+...+.+.-+-+-+.+.....+..    +.+    .|+  +.|..-+||++.   ++
T Consensus       243 ~~~~~~~~~r~~l~~~L~~~g~~~~~~~~g~f~~~~~~~~~~~~~~l~~~gi~v~~~~~f~--~~~~~~iRis~~---~~  317 (332)
T PRK06425        243 HSLDIMENERSYLINNLEAMGFRAAGDPSANFITFMIPDAHDFYSYLLKNGILVRLLDDYE--CLGEQYIRIAIR---RR  317 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEECCCCCceEEEEEcCCHHHHHHHHHHCCeEEEECCCCC--CCCCCEEEEEeC---CH
Confidence            45777888889999999998876532344444444444333333222    222    232  224568999987   57


Q ss_pred             HHHHHHHHHHHHHH
Q psy5049         120 NLWNRPHSPSLMAV  133 (153)
Q Consensus       120 edId~L~~~~L~~~  133 (153)
                      ++.+++++ +|+.+
T Consensus       318 ~~~~~l~~-al~~~  330 (332)
T PRK06425        318 SFNIKLVN-ALRNF  330 (332)
T ss_pred             HHHHHHHH-HHHHH
Confidence            89999998 77654

>PRK12566 glycine dehydrogenase; Provisional

Probab=90.44  E-value=0.74  Score=45.16  Aligned_cols=30  Identities=13%  Similarity=0.158  Sum_probs=25.6

Q ss_pred             CceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         106 DGLSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       106 ~~RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                      ...+||+.|-.+|++|||++++ ++..+.++
T Consensus       847 ~~~LmIepTE~eskeEIDrf~e-AL~~I~~e  876 (954)
T PRK12566        847 PGTLMVEPTESESKAELDRFVE-AMLSIRAE  876 (954)
T ss_pred             CCEEEEEeeeeCCHHHHHHHHH-HHHHHHHH
Confidence            5779999999999999999999 77655543

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=90.42  E-value=1.7  Score=36.80  Aligned_cols=86  Identities=13%  Similarity=-0.029  Sum_probs=52.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC--Cccc--CCCCCCeEEEEcCCc-hHHHhcc---ccccCCCCCCCCceEEEEeeCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG--LIVY--GHRDSPVVPVLVFFF-SKVGQTS---IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G--~~~~--~~s~SPIiPV~~g~~-~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      ..+.+++++++..++++.|.+..  +...  ..+...++.+-+..+ ......+   ..+..|.   +...+|++.+..|
T Consensus       300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~---~~~~lRi~~~~~~  376 (396)
T PRK02627        300 EEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELDRPAAEIVKKALEKGLLINVT---GDNVLRLLPPLII  376 (396)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEecCcHHHHHHHHHHCCeEEeec---CCCEEEEECCccc
Confidence            45678899999999999887653  1110  112234555544222 1221111   2223332   3467999999999


Q ss_pred             CHHHHHHHHHHHHHHHHh
Q psy5049         118 SANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       118 T~edId~L~~~~L~~~~~  135 (153)
                      |++|++++++ .++.+.+
T Consensus       377 ~~~~i~~~~~-~l~~~l~  393 (396)
T PRK02627        377 SKEEIDEAVD-RLEEVLK  393 (396)
T ss_pred             CHHHHHHHHH-HHHHHHH
Confidence            9999999998 7765543

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=90.02  E-value=2  Score=35.89  Aligned_cols=77  Identities=14%  Similarity=-0.011  Sum_probs=46.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCC-CcccCCCCCCeEEEEcCCchHHHhcc--------ccccCCCCCCCCceEEEEeeCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLG-LIVYGHRDSPVVPVLVFFFSKVGQTS--------IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G-~~~~~~s~SPIiPV~~g~~~~~~~~a--------~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      .+.+++++++..++++.|++.| +.+. .+.+..+-+-+.+..+..+..        +...||.+  +..-+||+++..+
T Consensus       244 ~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~~~~~l~~~l~~~gi~v~pg~~f~~~--~~~~iRi~~~~~~  320 (330)
T TIGR01140       244 AATRARLAAERARLAALLARLGGLEVV-GGTALFLLVRTPDAAALHEALARRGILIRDFDNFPGL--DPRYLRFALPTDE  320 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCC--CCCEEEEEecCHH
Confidence            4668999999999999999988 3332 233443333333333333322        33345543  3568999998765


Q ss_pred             CHHHHHHHHHHHH
Q psy5049         118 SANLWNRPHSPSL  130 (153)
Q Consensus       118 T~edId~L~~~~L  130 (153)
                        ++ +++++ +|
T Consensus       321 --~~-~~~~~-~l  329 (330)
T TIGR01140       321 --EN-DRLEE-AL  329 (330)
T ss_pred             --HH-HHHHH-hh
Confidence              44 77766 44

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=90.02  E-value=1.3  Score=37.40  Aligned_cols=77  Identities=17%  Similarity=0.096  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCccc-C----CCCCCeEEEEcCCc--hHHHhcc----ccccCCCCCCC----------
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVY-G----HRDSPVVPVLVFFF--SKVGQTS----IGLGVEQTALN----------  105 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~-~----~s~SPIiPV~~g~~--~~~~~~a----~~i~~PtVP~g----------  105 (153)
                      +..+++..++..++++.|.+.+.... +    ....+|+.+.+.+.  ....+..    +.++. . ...          
T Consensus       274 ~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~~I~~~~-G-~~~~~~~~~~~~~  351 (371)
T PF00266_consen  274 ERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGSDADDVVKYLEERGIAVST-G-SACAGPSLDILGM  351 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTSSHHHHHHHHHHHTEEEEE-S-TTTCHHHHHHHHT
T ss_pred             ccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCCCHHHHHHHHhhcCEEEec-c-CcccHHHHHHhCC
Confidence            55678899999999999998876332 2    12267888877442  2333322    22222 1 111          


Q ss_pred             CceEEEEeeCCCCHHHHHHH
Q psy5049         106 DGLSLYESSHLRSANLWNRP  125 (153)
Q Consensus       106 ~~RlRI~lsA~HT~edId~L  125 (153)
                      ..-+||+++..+|+||||+|
T Consensus       352 ~~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  352 GGVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             TTEEEEE-GTTSSHHHHHHH
T ss_pred             CCEEEEeccCCCCHHHHhhC
Confidence            28999999999999999985

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=89.95  E-value=1.3  Score=39.82  Aligned_cols=84  Identities=11%  Similarity=-0.071  Sum_probs=49.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCC----cccCCCCCCeEEEEcCCc-------------hHHHhcc-----ccc-cCCC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGL----IVYGHRDSPVVPVLVFFF-------------SKVGQTS-----IGL-GVEQ  101 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~----~~~~~s~SPIiPV~~g~~-------------~~~~~~a-----~~i-~~Pt  101 (153)
                      +.++..++++++..+|++.|.+.+.    ++....-.+++-|.+.++             ..+..+.     ..+ ..|.
T Consensus       365 ~~~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~  444 (474)
T PLN02482        365 QQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPS  444 (474)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEecc
Confidence            4567999999999999999986543    221112244555544321             1222222     122 2222


Q ss_pred             CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         102 TALNDGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       102 VP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      -+. .   + .++..||++|||++++ +++...
T Consensus       445 ~~~-~---~-~psl~ht~~dId~~l~-al~~~l  471 (474)
T PLN02482        445 QFE-A---G-FTSLAHTEEDIDFTIA-AAERVL  471 (474)
T ss_pred             CCC-C---C-cCCCCCCHHHHHHHHH-HHHHHH
Confidence            111 0   1 3889999999999998 776554

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=89.86  E-value=2.5  Score=41.57  Aligned_cols=81  Identities=6%  Similarity=-0.094  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC--CchHHHhcc--ccccCCCCCCCCceEEEEeeCCCCHHHHH
Q psy5049          48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF--FFSKVGQTS--IGLGVEQTALNDGLSLYESSHLRSANLWN  123 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g--~~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~HT~edId  123 (153)
                      +.-++.+.++.|+.+.|.+.|+.+....-.-.+-|-++  +.++..+.+  ..|..-.  .+...++||++-.+|++||+
T Consensus       342 ~iA~~~~~~a~~l~~~L~~~G~~~~~~~fF~~~~v~~~~~~~~~i~~~~~~~gi~l~~--~~~~~i~~s~~E~~t~~di~  419 (939)
T TIGR00461       342 NIARRIHSLTSILANGLENDPHELINKTWFDTLTVKVGNGISSELLKAAEEFNINLRA--VDTTTVGIALDETTTKADVE  419 (939)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCCccceEEEEeCCCCHHHHHHHHHHCCCeeee--cCCCEEEEEeecCCCHHHHH
Confidence            44566788999999999999998743222334555544  333333333  2222111  22458999999999999999


Q ss_pred             HHHHHHHH
Q psy5049         124 RPHSPSLM  131 (153)
Q Consensus       124 ~L~~~~L~  131 (153)
                      .+++ ++.
T Consensus       420 ~l~~-~~~  426 (939)
T TIGR00461       420 NLLK-VFD  426 (939)
T ss_pred             HHHH-Hhc
Confidence            9998 774

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK07777 aminotransferase; Validated

Probab=89.63  E-value=4.4  Score=34.47  Aligned_cols=83  Identities=8%  Similarity=-0.092  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEc---C--CchHHH-hcc--------ccccC-CCCCCCCceEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV---F--FFSKVG-QTS--------IGLGV-EQTALNDGLSLY  111 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~---g--~~~~~~-~~a--------~~i~~-PtVP~g~~RlRI  111 (153)
                      .+.++.+.++..++.+.|.+.|+.+.....+..+.+-+   +  +..... .+.        ++..| +..+.+...+||
T Consensus       285 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri  364 (387)
T PRK07777        285 AALRDSLQAKRDRLAAGLAEAGFEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRF  364 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCccCCCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEE
Confidence            45678899999999999999887764322232332222   1  212211 111        22222 223445678999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHH
Q psy5049         112 ESSHLRSANLWNRPHSPSLMA  132 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~  132 (153)
                      ++++  ++++++..++ .|..
T Consensus       365 ~~~~--~~~~l~~~l~-~l~~  382 (387)
T PRK07777        365 AFCK--RDDTLDEAIR-RLRA  382 (387)
T ss_pred             EecC--CHHHHHHHHH-HHHH
Confidence            9975  6899988766 5544

>PRK07682 hypothetical protein; Validated

Probab=89.00  E-value=4.5  Score=34.22  Aligned_cols=83  Identities=12%  Similarity=0.137  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC--eEEEEcC---CchHHH-hcc----ccccCCC---CCCCCceEEEEe
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSP--VVPVLVF---FFSKVG-QTS----IGLGVEQ---TALNDGLSLYES  113 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SP--IiPV~~g---~~~~~~-~~a----~~i~~Pt---VP~g~~RlRI~l  113 (153)
                      .+.+++++++..++.+.|++.|+.+.. +++.  +.+-+..   +..... .+.    ..+. |.   -+.+...+||++
T Consensus       279 ~~~~~~~~~~~~~~~~~L~~~~~~~~~-p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~-pg~~f~~~~~~~iRis~  356 (378)
T PRK07682        279 IRMRDSYRKRRNFFVTSFNEIGLTCHV-PGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVV-PGSVFGESGEGFIRCSY  356 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCccCC-CCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEc-CchhhCcCCCCeEEEEe
Confidence            456788899999999999998876532 3222  2221111   222222 111    2222 21   134568999999


Q ss_pred             eCCCCHHHHHHHHHHHHHHHH
Q psy5049         114 SHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~  134 (153)
                      +.  +++++++.++ .+..+.
T Consensus       357 ~~--~~~~l~~~l~-~l~~~l  374 (378)
T PRK07682        357 AT--SLEQLQEAMK-RMKRFV  374 (378)
T ss_pred             CC--CHHHHHHHHH-HHHHHH
Confidence            85  6899999877 666544

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=88.98  E-value=5.1  Score=34.05  Aligned_cols=84  Identities=11%  Similarity=-0.009  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCchHHHhcc----ccccCCCC-CCCCceEEEEeeCCCCHHH
Q psy5049          48 RRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQT-ALNDGLSLYESSHLRSANL  121 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~PtV-P~g~~RlRI~lsA~HT~ed  121 (153)
                      +.++++.++-.++.+.|++. |+.....+.+.-+-+-+.+.+...+.+    +.+++... +....-+||++.   ++++
T Consensus       273 ~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~---~~~~  349 (364)
T PRK04781        273 RRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFDDAEAAFQALLAAGVVVRDQRAAPRLSDALRITLG---TPEQ  349 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCCHHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCC---CHHH
Confidence            44556778888899999887 553112355555555455444333332    33333321 333457999997   5899


Q ss_pred             HHHHHHHHHHHHHh
Q psy5049         122 WNRPHSPSLMAVFR  135 (153)
Q Consensus       122 Id~L~~~~L~~~~~  135 (153)
                      .+++++ +++.+..
T Consensus       350 ~~~l~~-al~~~~~  362 (364)
T PRK04781        350 NDRVLA-ALQRTQA  362 (364)
T ss_pred             HHHHHH-HHHHHHh
Confidence            999998 8876643

>PRK08912 hypothetical protein; Provisional

Probab=88.59  E-value=5  Score=34.12  Aligned_cols=83  Identities=11%  Similarity=-0.021  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC------chHHHh-cc--------ccccCCCCCCCCceEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF------FSKVGQ-TS--------IGLGVEQTALNDGLSLY  111 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~------~~~~~~-~a--------~~i~~PtVP~g~~RlRI  111 (153)
                      .+.++++.++..++.+.|+..|+.+.....+..+.+-+..      ...... +.        .+..|-.-..+...+|+
T Consensus       285 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl  364 (387)
T PRK08912        285 EGMRADLARSRDRLAAGLRRIGFPVLPSQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRF  364 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEE
Confidence            5668889999999999999988876433335555555532      212221 11        22222111234678999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHH
Q psy5049         112 ESSHLRSANLWNRPHSPSLMA  132 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~  132 (153)
                      +++.  .+++++..++ .|..
T Consensus       365 ~~~~--~~~~l~~~l~-rl~~  382 (387)
T PRK08912        365 CFAK--RDATLDEAVE-RLAA  382 (387)
T ss_pred             EEeC--CHHHHHHHHH-HHHH
Confidence            9996  4788888666 4443

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=87.74  E-value=4.8  Score=34.08  Aligned_cols=77  Identities=12%  Similarity=0.064  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc---hHHHh-cc--------ccccCCCCCCCCceEEEEee
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF---SKVGQ-TS--------IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~---~~~~~-~a--------~~i~~PtVP~g~~RlRI~ls  114 (153)
                      .+.++.++++..++.+.|++.|+.+.....+..+-+-+.+.   .+... +.        .+..|+.  .+..-+||+++
T Consensus       290 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~--~~~~~~Ris~~  367 (383)
T TIGR03540       290 KEIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGE--YGEGYIRISLT  367 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEecCCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEecchhhCc--cCCCeEEEEec
Confidence            45688899999999999999887654333344444554432   22221 11        2223432  23567999996


Q ss_pred             CCCCHHHHHHHHH
Q psy5049         115 HLRSANLWNRPHS  127 (153)
Q Consensus       115 A~HT~edId~L~~  127 (153)
                        .++++++..++
T Consensus       368 --~~~~~l~~~l~  378 (383)
T TIGR03540       368 --VPDERLEEAVA  378 (383)
T ss_pred             --CCHHHHHHHHH
Confidence              46777777544

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=87.72  E-value=1.5  Score=38.92  Aligned_cols=85  Identities=12%  Similarity=-0.030  Sum_probs=49.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhC-CCcccC--CCCCCeEEEEc-----CCchHHHhcc-----ccc-cCCCCCCCCceEE
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRL-GLIVYG--HRDSPVVPVLV-----FFFSKVGQTS-----IGL-GVEQTALNDGLSL  110 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~s~SPIiPV~~-----g~~~~~~~~a-----~~i-~~PtVP~g~~RlR  110 (153)
                      +.+.+.++++++.++|++.|+++ ++...+  .+..-...|-+     ++...+..+.     ..+ ..+    +...+|
T Consensus       343 ~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~----~~~~lr  418 (445)
T PRK09221        343 REEDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRY----TGDTIA  418 (445)
T ss_pred             HhccHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEee----cCCEEE
Confidence            34568899999999999999875 221100  01011112211     1111222221     122 222    236899


Q ss_pred             EEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         111 YESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       111 I~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      |+....+|++|||++++ ++++..
T Consensus       419 ~~Ppl~~t~~eid~~~~-~l~~~l  441 (445)
T PRK09221        419 LSPPLIIEKAQIDELVD-ALGDAL  441 (445)
T ss_pred             EECCccCCHHHHHHHHH-HHHHHH
Confidence            99999999999999998 776554

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=87.70  E-value=3.6  Score=34.55  Aligned_cols=80  Identities=11%  Similarity=-0.008  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc---hHHHhcc--------ccccCCCCCCCCceEEEEeeC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF---SKVGQTS--------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~---~~~~~~a--------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      .++|++++++...+.+.|...|+.+.....+..+-+-+.+.   ....+..        .+..|..  .+..-+||++. 
T Consensus       258 ~~~r~~l~~~~~~~~~~l~~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~L~~~gv~v~~g~~f~~--~~~~~~Ri~~~-  334 (350)
T TIGR03537       258 LERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYLWVKVPSGIDAKDYALRLLENGIVVAPGENFGS--GEEGYVRVALV-  334 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccCCCeEEEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCC--CCCCEEEEEec-
Confidence            56788999999999999999887653222233444545432   2222211        2222322  22456999985 


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLM  131 (153)
Q Consensus       116 ~HT~edId~L~~~~L~  131 (153)
                       .++++++..++ .++
T Consensus       335 -~~~~~~~~~l~-~~~  348 (350)
T TIGR03537       335 -PTLEECEEALR-LWE  348 (350)
T ss_pred             -CCHHHHHHHHH-HHh
Confidence             57899988766 444

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK08175 aminotransferase; Validated

Probab=87.67  E-value=7.2  Score=33.37  Aligned_cols=83  Identities=12%  Similarity=0.055  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc------hHHHh-cc--------ccccCCCCCCCCceEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF------SKVGQ-TS--------IGLGVEQTALNDGLSLY  111 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~------~~~~~-~a--------~~i~~PtVP~g~~RlRI  111 (153)
                      .+.++.++++..++.+.|++.|+.+...+.+..+-+-+.+.      .+... +.        ....|+  +.+...+||
T Consensus       290 ~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~--~~~~~~lRi  367 (395)
T PRK08175        290 RDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFG--DYGDTHVRF  367 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhC--cCCCCeEEE
Confidence            45678888999999999999887653333466666665542      22221 11        222332  334568999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         112 ESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      ++.  ++++.+...++ .+..+.
T Consensus       368 s~~--~~~~~~~~al~-~l~~~l  387 (395)
T PRK08175        368 ALI--ENRDRIRQAIR-GIKAMF  387 (395)
T ss_pred             EeC--CCHHHHHHHHH-HHHHHH
Confidence            985  57888888777 554444

>PRK06290 aspartate aminotransferase; Provisional

Probab=87.22  E-value=4.2  Score=35.42  Aligned_cols=85  Identities=8%  Similarity=-0.064  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC----------chHHHhcc----ccccCCCCCCCCceEEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF----------FSKVGQTS----IGLGVEQTALNDGLSLYE  112 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~----------~~~~~~~a----~~i~~PtVP~g~~RlRI~  112 (153)
                      ++.+++++++..++.+.|++.|+.+.....+-.+-+-+.+          .....+..    ..+..|.-..+ ..+||+
T Consensus       303 ~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~-~~lRi~  381 (410)
T PRK06290        303 EKIREKYSRRLDKLVKILNEVGFKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG-HFLRFS  381 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc-CeEEEE
Confidence            5578889999999999999988765322223333333432          12222222    23333432222 589999


Q ss_pred             ee-CCCCHHHHHHHHHHHHHHH
Q psy5049         113 SS-HLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       113 ls-A~HT~edId~L~~~~L~~~  133 (153)
                      +. -..++|+.+++++ +|+..
T Consensus       382 ~~~~~~~~~~~~~~~~-~l~~~  402 (410)
T PRK06290        382 VTFEAKDEEEEDRILE-EIKRR  402 (410)
T ss_pred             EEcccccccchhHHHH-HHHHH
Confidence            97 5678888999888 66543

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=87.15  E-value=3.2  Score=36.58  Aligned_cols=85  Identities=9%  Similarity=-0.088  Sum_probs=56.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCC-CcccC--CCCCCeEEEEcCCchHHHhcc-----cc-ccCCCCCCCCceEEEEeeC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLG-LIVYG--HRDSPVVPVLVFFFSKVGQTS-----IG-LGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G-~~~~~--~s~SPIiPV~~g~~~~~~~~a-----~~-i~~PtVP~g~~RlRI~lsA  115 (153)
                      ..+..+++++++..+|++.|+.+. +...+  .+...+++|.+.++..+..+.     .. +..|.   | ..+||...-
T Consensus       325 ~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~~~~~~~~~~~~~Gl~~~~~---g-~~l~~~PpL  400 (422)
T PRK05630        325 ETGMWRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQPVDMEEATQAAVDHGVWLRPF---G-RLVYVMPPY  400 (422)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECCcccHHHHHHHHHHCCeEEEec---C-CEEEEECCc
Confidence            344678899999999999887532 11111  134789999987653222222     22 22332   4 578999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~  134 (153)
                      .+|++|||.+++ +++...
T Consensus       401 ~it~~~i~~~~~-~l~~al  418 (422)
T PRK05630        401 ITTSEQIAQICA-ALAAAV  418 (422)
T ss_pred             cCCHHHHHHHHH-HHHHHH
Confidence            999999999998 776544

>PLN00175 aminotransferase family protein; Provisional

Probab=87.14  E-value=7  Score=33.97  Aligned_cols=84  Identities=8%  Similarity=-0.064  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEc---C--CchHHHhcc-----ccccC-----CCCCCCCceEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV---F--FFSKVGQTS-----IGLGV-----EQTALNDGLSLY  111 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~---g--~~~~~~~~a-----~~i~~-----PtVP~g~~RlRI  111 (153)
                      ++.++.+.++..++.+.|++.|+.+.....+..+.+-+   +  +........     +.+.+     +..+.+...+||
T Consensus       312 ~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRl  391 (413)
T PLN00175        312 EELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRF  391 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEE
Confidence            56788999999999999999887654322233333332   1  122222211     22222     222335678999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHHH
Q psy5049         112 ESSHLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~~  133 (153)
                      +++.  ++|+++..++ .|...
T Consensus       392 s~~~--~~e~l~~~~~-rL~~~  410 (413)
T PLN00175        392 AFCK--DEETLRAAVE-RMKTK  410 (413)
T ss_pred             EEcC--CHHHHHHHHH-HHHHH
Confidence            9984  7999999777 55543

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=87.06  E-value=4.6  Score=36.08  Aligned_cols=89  Identities=9%  Similarity=0.105  Sum_probs=53.6

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhC--CCcccC--CCCCCeEEEEcC------CchHHHhcc-----ccc-cCCCCCCCCc
Q psy5049          44 ISGIRRISVLAHNTRYFRRKLNRL--GLIVYG--HRDSPVVPVLVF------FFSKVGQTS-----IGL-GVEQTALNDG  107 (153)
Q Consensus        44 ~~~~~rr~~L~~ni~~fr~~L~~~--G~~~~~--~s~SPIiPV~~g------~~~~~~~~a-----~~i-~~PtVP~g~~  107 (153)
                      .+.+...++.+++..+|++.|+++  ++.+.+  .+..-.+.|-+-      +.+.+..+.     ..+ ..|. +.+..
T Consensus       337 l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-g~~~~  415 (457)
T PRK05639        337 IEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSY-GMFGN  415 (457)
T ss_pred             HHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeec-CCCCC
Confidence            345677888889999999999863  232211  111122233221      122222222     222 3333 44468


Q ss_pred             eEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         108 LSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       108 RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      .+|+.....||++|||.+++ +++...
T Consensus       416 ~lr~~Ppl~it~~~id~~~~-~l~~~l  441 (457)
T PRK05639        416 VIRITPPLVITKEIAEKGLE-IMERAI  441 (457)
T ss_pred             EEEEeCCCccCHHHHHHHHH-HHHHHH
Confidence            99999999999999999998 776554

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=86.88  E-value=10  Score=31.97  Aligned_cols=83  Identities=17%  Similarity=0.029  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC-chHHHhcc----ccc----cCCCCCCCCceEEEEeeCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF-FSKVGQTS----IGL----GVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~-~~~~~~~a----~~i----~~PtVP~g~~RlRI~lsA~  116 (153)
                      .+.++.++++..++.+.|+.. |+.+. .+.+.-+-+-+.. .....+..    +.+    .|+..  +..-+||+++  
T Consensus       263 ~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~--~~~~iRis~~--  337 (356)
T PRK08056        263 QATWQWLAEEGARFYQALCALPLLTVW-PGRANYLFLRCERPDIDLQRALLTQRILIRSCANYPGL--DSRYYRVAIR--  337 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcEEc-CCCCcEEEEEcCCChHHHHHHHHHCCeEEEECCCCCCC--CCCEEEEEEc--
Confidence            355788889999999999876 55543 3445543333332 22222221    222    34332  2357999986  


Q ss_pred             CCHHHHHHHHHHHHHHHHhc
Q psy5049         117 RSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       117 HT~edId~L~~~~L~~~~~~  136 (153)
                       ++++.+++++ +|+.+.++
T Consensus       338 -~~~~~~~l~~-~l~~~~~~  355 (356)
T PRK08056        338 -SAAENERLLA-ALRNVLTG  355 (356)
T ss_pred             -CHHHHHHHHH-HHHHHHcc
Confidence             6799999998 88877654

>PRK14012 cysteine desulfurase; Provisional

Probab=86.62  E-value=8.3  Score=33.07  Aligned_cols=30  Identities=0%  Similarity=-0.078  Sum_probs=25.6

Q ss_pred             CceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         106 DGLSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       106 ~~RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                      ...+|++++...|++|+|++++ +|+++.+.
T Consensus       350 ~~~iRls~~~~~t~~dvd~~~~-~l~~~~~~  379 (404)
T PRK14012        350 HSSIRFSLGRFTTEEEIDYAIE-LVRKSIGK  379 (404)
T ss_pred             CceEEEEecCCCCHHHHHHHHH-HHHHHHHH
Confidence            4679999999999999999999 88766543

>PRK08068 transaminase; Reviewed

Probab=86.39  E-value=6.1  Score=33.68  Aligned_cols=78  Identities=6%  Similarity=-0.101  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCC-CeEEEEcCC---chHHHhcc----ccccCCCC---CCCCceEEEEeeC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDS-PVVPVLVFF---FSKVGQTS----IGLGVEQT---ALNDGLSLYESSH  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~S-PIiPV~~g~---~~~~~~~a----~~i~~PtV---P~g~~RlRI~lsA  115 (153)
                      ++.+++++++..++.+.|++.|+.+. .+.. -.+-+-+.+   ........    .....|..   +.+...+||+++ 
T Consensus       293 ~~~~~~~~~~r~~~~~~L~~~g~~~~-~~~g~~~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-  370 (389)
T PRK08068        293 AELVARYESRRNAFISACREIGWEVD-APKGSFFAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLL-  370 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCccc-CCCeeEEEEEECCCCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEc-
Confidence            56788899999999999999887653 2333 333444432   22222221    11122221   335679999996 


Q ss_pred             CCCHHHHHHHHH
Q psy5049         116 LRSANLWNRPHS  127 (153)
Q Consensus       116 ~HT~edId~L~~  127 (153)
                       +.++.+...++
T Consensus       371 -~~~~~l~~al~  381 (389)
T PRK08068        371 -TDEERLREAVE  381 (389)
T ss_pred             -CCHHHHHHHHH
Confidence             35566555443

>PRK06225 aspartate aminotransferase; Provisional

Probab=86.34  E-value=13  Score=31.53  Aligned_cols=86  Identities=8%  Similarity=-0.025  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCccc-CCCCCCeEEEEcCC----chHHHhcc----ccccC---CCCCCCCceEEEEe
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVY-GHRDSPVVPVLVFF----FSKVGQTS----IGLGV---EQTALNDGLSLYES  113 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~-~~s~SPIiPV~~g~----~~~~~~~a----~~i~~---PtVP~g~~RlRI~l  113 (153)
                      +..++.++++..++++.|.+. |+.+. ..+.+..+.+.+.+    .....+..    ..+++   ...+.|...+|+++
T Consensus       277 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~  356 (380)
T PRK06225        277 DRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSF  356 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEe
Confidence            344556677788888888873 53221 12345566665532    12222211    22211   11133566899998


Q ss_pred             eCCCCHHHHHHHHHHHHHHHHh
Q psy5049         114 SHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~~  135 (153)
                      +  +++|+++++++ .|..+.+
T Consensus       357 ~--~~~e~l~~~~~-~l~~~~~  375 (380)
T PRK06225        357 S--IPREQVEVFCE-EFPDVVE  375 (380)
T ss_pred             C--CCHHHHHHHHH-HHHHHHH
Confidence            6  47999999998 7766554

>PLN02483 serine palmitoyltransferase

Probab=86.21  E-value=0.51  Score=42.40  Aligned_cols=33  Identities=18%  Similarity=0.436  Sum_probs=27.6

Q ss_pred             HHHHHHHhHHHHHHHhhhcccEEeecCCCCCCC
Q psy5049           3 LISVLAQNTRYFRRKLNRLGLILYVLFQAQTKP   35 (153)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p   35 (153)
                      .++++++|++||++.|+++||.++|...++..|
T Consensus       370 ~~~~l~~~~~~l~~~L~~~G~~v~~~~~sp~~~  402 (489)
T PLN02483        370 KLAQIRENSNFFRSELQKMGFEVLGDNDSPVMP  402 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcccCCCCCCEEE
Confidence            467899999999999999999998875555555

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=86.05  E-value=7.4  Score=32.81  Aligned_cols=81  Identities=16%  Similarity=0.016  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE-cCCchHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL-VFFFSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANL  121 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~-~g~~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~ed  121 (153)
                      .+.++++.++..++.+.|++.|+.+. .++++.+-+. +.+.....+..    ..++.-. .  ...+||+++   ++++
T Consensus       278 ~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~--~~~iRi~~~---~~~~  350 (368)
T PRK03317        278 LASVAALRAERDRVVAWLRELGLRVA-PSDANFVLFGRFADRHAVWQGLLDRGVLIRDVG-I--PGWLRVTIG---TPEE  350 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEeC-CCCCcEEEEeccCCHHHHHHHHHHCCEEEEeCC-C--CCeEEEecC---CHHH
Confidence            34566778888899999998888653 3555644332 22222222222    2222111 1  358999975   7899


Q ss_pred             HHHHHHHHHHHHHh
Q psy5049         122 WNRPHSPSLMAVFR  135 (153)
Q Consensus       122 Id~L~~~~L~~~~~  135 (153)
                      ++++++ +++.+.+
T Consensus       351 ~~~~~~-~l~~~~~  363 (368)
T PRK03317        351 NDAFLA-ALAEVLA  363 (368)
T ss_pred             HHHHHH-HHHHHHH
Confidence            999998 7776643

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=85.96  E-value=8  Score=32.65  Aligned_cols=80  Identities=13%  Similarity=0.038  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC--CchHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF--FFSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSAN  120 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g--~~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~e  120 (153)
                      .+.+++++++-.++.+.|++.|+.+.  + ++.+ +++.  +.....+..    +.++.-.   ....+||+++.  |++
T Consensus       248 ~~~~~~~~~~r~~l~~~L~~~g~~~~--~-~~~f-~~~~~~~~~~l~~~l~~~GI~vr~~~---~~~~lRisi~~--~~~  318 (339)
T PRK06959        248 AAMRERLAADGARLAALLRAHGFAVH--A-TPLF-SWTDDPRAAALHAALARRGIWTRYFA---PPPSVRFGLPA--DEA  318 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCcc--C-cceE-EEEeCCCHHHHHHHHHhCCeEEEECC---CCCeEEEECCC--CHH
Confidence            56788899999999999999998763  2 3432 3332  222222222    3333211   23589999754  557


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy5049         121 LWNRPHSPSLMAVFRG  136 (153)
Q Consensus       121 dId~L~~~~L~~~~~~  136 (153)
                      |++++++ +|+.+.+.
T Consensus       319 e~~~l~~-al~~~~~~  333 (339)
T PRK06959        319 EWQRLED-ALAECVPT  333 (339)
T ss_pred             HHHHHHH-HHHHHHHH
Confidence            9999998 88766554

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=85.47  E-value=6.8  Score=33.47  Aligned_cols=50  Identities=8%  Similarity=-0.157  Sum_probs=36.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCC------Cccc------------CCCCCCeEEEEcC-CchHHHhcc
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLG------LIVY------------GHRDSPVVPVLVF-FFSKVGQTS   94 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G------~~~~------------~~s~SPIiPV~~g-~~~~~~~~a   94 (153)
                      ..+.+++++++|+.++.+.|.+.+      +.-.            ..+.++|+++.+. +.+.+.++.
T Consensus       235 tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~  303 (369)
T cd00614         235 TLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFL  303 (369)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHH
Confidence            446789999999999999999876      2110            0134789999995 666666654

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=85.46  E-value=5.7  Score=34.89  Aligned_cols=84  Identities=7%  Similarity=-0.085  Sum_probs=48.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHh----CCCcccCCCCCCeEEEEcCCc-------------hHHHhcc-----c-cccCCC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNR----LGLIVYGHRDSPVVPVLVFFF-------------SKVGQTS-----I-GLGVEQ  101 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~----~G~~~~~~s~SPIiPV~~g~~-------------~~~~~~a-----~-~i~~Pt  101 (153)
                      +.++..++++++..+|++.|++    .++.........++.|.+.++             ..+..+.     . .+..|.
T Consensus       319 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~  398 (428)
T PRK12389        319 QQEGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKGALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPS  398 (428)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcEEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecC
Confidence            3456899999999999999985    343221112223555555322             1122222     1 222232


Q ss_pred             CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         102 TALNDGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       102 VP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                         +...  +.++..||+||||++++ ++++..
T Consensus       399 ---~~~~--~~~~l~~t~e~id~~~~-~l~~~l  425 (428)
T PRK12389        399 ---KYEA--WFLTTAHTEEDIEETLE-AVDRAF  425 (428)
T ss_pred             ---CCCC--eeecCCCCHHHHHHHHH-HHHHHH
Confidence               1111  45789999999999998 776554

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=85.23  E-value=7.3  Score=33.00  Aligned_cols=79  Identities=10%  Similarity=-0.079  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc---hHH-Hhcc---ccccCCC---CCCCCceEEEEeeCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF---SKV-GQTS---IGLGVEQ---TALNDGLSLYESSHL  116 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~---~~~-~~~a---~~i~~Pt---VP~g~~RlRI~lsA~  116 (153)
                      .+.++.++++..++.+.|++.|+.+.....+..+-+-+.+.   .+. ..+.   ....-|.   -+.+..-+||++.  
T Consensus       292 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--  369 (385)
T PRK09276        292 EELRKIYQERRDILVEGLRKLGLEVEPPKATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT--  369 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC--
Confidence            45577888889999999999887654323344445555432   222 1111   1111121   1234568999996  


Q ss_pred             CCHHHHHHHHH
Q psy5049         117 RSANLWNRPHS  127 (153)
Q Consensus       117 HT~edId~L~~  127 (153)
                      .+++++...++
T Consensus       370 ~~~~~l~~~l~  380 (385)
T PRK09276        370 VPDERIEEAVE  380 (385)
T ss_pred             CCHHHHHHHHH
Confidence            46777777544

>PRK03321 putative aminotransferase; Provisional

Probab=84.72  E-value=13  Score=31.07  Aligned_cols=80  Identities=9%  Similarity=-0.041  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc-hHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF-SKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANL  121 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~-~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~ed  121 (153)
                      .+.++++.++-.++.+.|.+.|+.+. .+.++.+-+-++.. ....+..    +.++ |   -+...+||++   .++++
T Consensus       266 ~~~~~~~~~~r~~~~~~L~~~~~~~~-~~~g~~i~i~l~~~~~~~~~~l~~~gI~v~-~---~~~~~iRi~~---~~~~~  337 (352)
T PRK03321        266 LERVDAVVAERDRVRAALRAAGWTVP-PSQANFVWLPLGERTADFAAAAAEAGVVVR-P---FAGEGVRVTI---GAPEE  337 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCccC-CCCCCEEEEeCCCCHHHHHHHHHHCCEEEE-c---cCCCcEEEee---CCHHH
Confidence            44455566666778899988887653 34566655555432 2222221    2222 2   2445699998   58899


Q ss_pred             HHHHHHHHHHHHHh
Q psy5049         122 WNRPHSPSLMAVFR  135 (153)
Q Consensus       122 Id~L~~~~L~~~~~  135 (153)
                      .+++++ +++.+.+
T Consensus       338 ~~~~~~-al~~~~~  350 (352)
T PRK03321        338 NDAFLR-AARAWRA  350 (352)
T ss_pred             HHHHHH-HHHHHhc
Confidence            999998 8877654

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=83.81  E-value=11  Score=31.69  Aligned_cols=81  Identities=16%  Similarity=0.080  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCchHHHhcc----ccccCCCC-CCCCceEEEEeeCCCCHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQT-ALNDGLSLYESSHLRSAN  120 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~PtV-P~g~~RlRI~lsA~HT~e  120 (153)
                      .+.++.++++-.++.+.|.+. |+.+. .++++.+-+-+.+.....+.+    +.++.-.. +.+..-+||++.   +.+
T Consensus       262 ~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~i~~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~---~~~  337 (351)
T PRK14807        262 KERVNYILNERERLIKELSKIPGIKVY-PSKTNFILVKFKDADYVYQGLLERGILVRDFSKVEGLEGALRITVS---SCE  337 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcEEC-cCCccEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC---CHH
Confidence            455667777888888888765 66543 345665555555544444333    23322121 223567999987   478


Q ss_pred             HHHHHHHHHHHH
Q psy5049         121 LWNRPHSPSLMA  132 (153)
Q Consensus       121 dId~L~~~~L~~  132 (153)
                      +.+++++ +|+.
T Consensus       338 ~~~~l~~-~l~~  348 (351)
T PRK14807        338 ANDYLIN-GLKE  348 (351)
T ss_pred             HHHHHHH-HHHH
Confidence            8888888 7754

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=83.68  E-value=15  Score=31.78  Aligned_cols=84  Identities=13%  Similarity=-0.012  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc-hHHHhcc--------ccccCCCCCCCCceEEEEeeCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF-SKVGQTS--------IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~-~~~~~~a--------~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      .+.++.++++-.++.+.|++.|+.+...+.+--+-+-+.++ ......+        .+..| .++.+..-+||+++. .
T Consensus       336 ~~~~~~~~~~r~~~~~~L~~~~~~~~~p~gg~f~~~~l~~~~~~~~~~l~~~gV~v~pg~~f-~~~~~~~~iRis~~~-~  413 (431)
T PRK15481        336 AQARLFYAQRRQKLARALQQYGIAIPSPGDGLNLWLPLDTDSQATALTLAKSGWLVREGEAF-GVSAPSHGLRITLST-L  413 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccccCCCeEEEEEECCCCHHHHHHHHHHCCcEEecCCcc-ccCCCCCeEEEEcCC-C
Confidence            35688888999999999998887542222233322323221 2222221        22223 122233579999976 5


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy5049         118 SANLWNRPHSPSLMAV  133 (153)
Q Consensus       118 T~edId~L~~~~L~~~  133 (153)
                      ++++++..++ .|..+
T Consensus       414 ~~~~i~~~~~-~l~~~  428 (431)
T PRK15481        414 NDAEINRLAA-DLHQA  428 (431)
T ss_pred             ChHHHHHHHH-HHHHH
Confidence            7999999877 66544

>PRK05367 glycine dehydrogenase; Provisional

Probab=83.40  E-value=6.3  Score=38.80  Aligned_cols=29  Identities=17%  Similarity=0.200  Sum_probs=24.6

Q ss_pred             CceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         106 DGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       106 ~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      .+.++|+.+-..|++|||++++ ++..+.+
T Consensus       846 ~~~l~i~ptE~~s~~elDr~~~-al~~i~~  874 (954)
T PRK05367        846 AGTLMVEPTESESKAELDRFCD-AMIAIRA  874 (954)
T ss_pred             CCEEEEEeeecCCHHHHHHHHH-HHHHHHH
Confidence            5679999999999999999999 7755543

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=83.24  E-value=8  Score=34.16  Aligned_cols=89  Identities=7%  Similarity=-0.059  Sum_probs=55.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc-------hHHHhcc------ccccCCCCCCCCc
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF-------SKVGQTS------IGLGVEQTALNDG  107 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~-------~~~~~~a------~~i~~PtVP~g~~  107 (153)
                      +.++..++.++.-.+|+++|++.    ++.....+...++.+.+.++       +.+..+.      ..+..|.-+.+ .
T Consensus       336 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~-~  414 (443)
T PRK06058        336 EEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYG-N  414 (443)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCCC-C
Confidence            44578888899999999999763    22100123345555555321       1122221      23344432322 5


Q ss_pred             eEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         108 LSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       108 RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      .+|+.....||++|||++++ .++++.+
T Consensus       415 ~lr~~Ppl~~t~~~i~~~~~-~l~~~l~  441 (443)
T PRK06058        415 VIRLLPPLVIGDELLREGLD-VLEAALA  441 (443)
T ss_pred             EEEEECCCccCHHHHHHHHH-HHHHHHH
Confidence            89999999999999999998 7776543

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=83.20  E-value=6.1  Score=35.18  Aligned_cols=110  Identities=13%  Similarity=0.088  Sum_probs=60.1

Q ss_pred             HHHhHHHHHHHhhhc--ccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEc
Q psy5049           7 LAQNTRYFRRKLNRL--GLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV   84 (153)
Q Consensus         7 ~~~~~~~~~~~l~~~--g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~   84 (153)
                      +..=+.+|.++|...  ++.+-|+....+|=.+...+...+++           .+--.|...|+-+  ++.|..-.=-+
T Consensus       265 ~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE-----------~ll~~L~~~gI~v--StGSACsS~~~  331 (386)
T COG1104         265 LRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGE-----------SLLLALDLAGIAV--STGSACSSGSL  331 (386)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCcHH-----------HHHHhccccCeEE--eccccccCCCC
Confidence            333345588888875  77777765344443322224444443           2333455556544  23343111001


Q ss_pred             CCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049          85 FFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus        85 g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      . +..+.   .+...+. ..-.+-+||+++...|+||+|++++ ++..+.+
T Consensus       332 ~-pShVL---~AmG~~~-e~a~~siR~S~g~~tt~eei~~~~~-~l~~~i~  376 (386)
T COG1104         332 E-PSHVL---RAMGISE-ELAHGSIRFSLGRFTTEEEIDAAAE-ALKEIIK  376 (386)
T ss_pred             C-ccHHH---HHcCCCh-HHhCccEEEEcCCCCCHHHHHHHHH-HHHHHHH
Confidence            0 11111   2333333 3446899999999999999999998 7765543

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=83.06  E-value=17  Score=30.71  Aligned_cols=82  Identities=9%  Similarity=0.011  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC-chHHHhcc----ccccCCC-CCCCCceEEEEeeCCCCHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF-FSKVGQTS----IGLGVEQ-TALNDGLSLYESSHLRSAN  120 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~-~~~~~~~a----~~i~~Pt-VP~g~~RlRI~lsA~HT~e  120 (153)
                      ++.++.+.++-.++.+.|++.|+.+. .+.+.-+-+-+.. ..+..+..    +.++ |. .+....-+||+++   +++
T Consensus       282 ~~~~~~~~~~r~~l~~~L~~~g~~~~-p~~g~fl~~~~~~~~~~l~~~l~~~gi~v~-p~~~~~~~~~iRi~~~---~~~  356 (371)
T PRK05166        282 AKGVALALAERERLKKELAEMGYRIA-PSRANFLFFDARRPASAVAEALLRQGVIVK-PWKQPGFETFIRVSIG---SPE  356 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCcCeeC-CCcCCEEEEeCCCCHHHHHHHHHHCCeEEe-cCCCCCCCCeEEEEcC---CHH
Confidence            44466777888889999998887653 3445544333322 22222222    2222 22 1233678999998   577


Q ss_pred             HHHHHHHHHHHHHH
Q psy5049         121 LWNRPHSPSLMAVF  134 (153)
Q Consensus       121 dId~L~~~~L~~~~  134 (153)
                      +.+++.+ +|+.+.
T Consensus       357 ~~~~l~~-~l~~i~  369 (371)
T PRK05166        357 ENDHFVA-ALDKVL  369 (371)
T ss_pred             HHHHHHH-HHHHHh
Confidence            7888887 777653

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=82.97  E-value=2.1  Score=37.94  Aligned_cols=55  Identities=25%  Similarity=0.230  Sum_probs=38.2

Q ss_pred             HHHHHHHhHHHHHHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcc
Q psy5049           3 LISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIV   71 (153)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~   71 (153)
                      ...+|.+|++|||+.+...||.+ +...+++.|+    +.....   +      +..+...|.+.|+.+
T Consensus       295 ~r~~L~~~~~~~~~~~~~~~~~~-~~s~s~I~pv----~~gd~~---~------a~~~s~~l~~~Gi~v  349 (388)
T COG0156         295 RRERLQELAAFFRSLLKALGLVL-LPSESPIIPV----ILGDEE---R------ALEASRALLEEGIYV  349 (388)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcc-CCCCCCeeee----EeCCHH---H------HHHHHHHHHHCCeeE
Confidence            34688999999999999999996 6667777774    322221   1      345556666668765

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=82.08  E-value=8.1  Score=33.06  Aligned_cols=81  Identities=7%  Similarity=-0.147  Sum_probs=47.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEc--CC--c-hHHHhcc----ccccCCCC-CCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV--FF--F-SKVGQTS----IGLGVEQT-ALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~--g~--~-~~~~~~a----~~i~~PtV-P~g~~RlRI~lsA  115 (153)
                      .+++++.++++..++++.+.+.+  +.. +.+.  .+++  ..  . +.+..+.    +.+++-.- +....-+|||+..
T Consensus       252 ~~~~~~~l~~r~~~~~~~l~~~~--~~~-~~~~--f~~~~~~~~~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~  326 (346)
T TIGR03576       252 LSRIRDAFKRKEEVYLRLFDKLN--VER-TPTG--FVIKGVEEEKLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAA  326 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC--CCc-CCCe--EEEEeCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEec
Confidence            36789999999999999998543  322 2233  2333  21  1 2333332    33332111 2225689999997


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q psy5049         116 LR-SANLWNRPHSPSLMA  132 (153)
Q Consensus       116 ~H-T~edId~L~~~~L~~  132 (153)
                      .. ++.+.+++++ +++.
T Consensus       327 ~~~~~~~~~~~~~-al~~  343 (346)
T TIGR03576       327 KDAERIGDDYLVE-AVKD  343 (346)
T ss_pred             ChHHhcCHHHHHH-HHHh
Confidence            65 4558999888 6653

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=82.00  E-value=7.5  Score=32.69  Aligned_cols=76  Identities=8%  Similarity=-0.001  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc--hHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF--SKVGQTS----IGLGVEQTALNDGLSLYESSHLRSAN  120 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~--~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~e  120 (153)
                      .+.++.++++..++.+.|++.|+.+. .++++.+.+.++..  ....+..    ..++.  .+   ..+||++..   .+
T Consensus       252 ~~~~~~~~~~r~~l~~~L~~~g~~~~-~~~g~f~~~~l~~~~~~~~~~~l~~~Gi~V~~--~~---~~~Risi~~---~~  322 (335)
T PRK14808        252 EERTKFIVEERERMKSALREMGYRIT-DSRGNFVFIFMEKEEKERLLEHLRAKNIAVRS--FR---EGVRITIGK---RE  322 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEC-CCCCeEEEEeCCCccHHHHHHHHHHCCeEEEE--CC---CCeEEecCC---HH
Confidence            44567778888889999999998764 46778887777632  2222222    33332  22   469999876   47


Q ss_pred             HHHHHHHHHHHH
Q psy5049         121 LWNRPHSPSLMA  132 (153)
Q Consensus       121 dId~L~~~~L~~  132 (153)
                      +.+++++ +|+.
T Consensus       323 ~~~~~~~-~l~~  333 (335)
T PRK14808        323 ENDMILK-ELEV  333 (335)
T ss_pred             HHHHHHH-HHHh
Confidence            8888887 6654

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=81.65  E-value=17  Score=31.04  Aligned_cols=86  Identities=9%  Similarity=0.067  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC-----chHHH-hcc----ccccCCC---CCCCCceEEEEe
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF-----FSKVG-QTS----IGLGVEQ---TALNDGLSLYES  113 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~-----~~~~~-~~a----~~i~~Pt---VP~g~~RlRI~l  113 (153)
                      ...++.+.++..++.+.|++.|+.+........+-+-+.+     ..... .+.    ..+ .|.   -+.+...+||++
T Consensus       290 ~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v-~pg~~f~~~~~~~iRi~~  368 (391)
T PRK07309        290 LPMKKEYIKRRDYIIEKMTDLGFKIIKPDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAF-IPGAAFGPYGEGYVRLSY  368 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEE-eCchhhCCCCCCEEEEEe
Confidence            3457788889999999999888765322222222222221     12222 222    222 121   144568999999


Q ss_pred             eCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         114 SHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~~~  136 (153)
                      +.  ++++++..++ .+..+.+.
T Consensus       369 ~~--~~~~l~~~i~-~l~~~~~~  388 (391)
T PRK07309        369 AA--SMETIKEAMK-RLKEYMEE  388 (391)
T ss_pred             cC--CHHHHHHHHH-HHHHHHHh
Confidence            85  6789999888 66655443

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=80.37  E-value=10  Score=33.15  Aligned_cols=93  Identities=6%  Similarity=-0.076  Sum_probs=54.4

Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCC--------chHHHhcc-----cc-ccCCCC
Q psy5049          41 ICFISGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFF--------FSKVGQTS-----IG-LGVEQT  102 (153)
Q Consensus        41 l~~~~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~--------~~~~~~~a-----~~-i~~PtV  102 (153)
                      +.....++..+++++..+++++.|...    +......+....+.|.+.+        ...+..+.     .. +..|..
T Consensus       312 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~  391 (425)
T PRK08088        312 LKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCG  391 (425)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCC
Confidence            333445678888888889988888743    2110001223445666521        11122222     22 233432


Q ss_pred             CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         103 ALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       103 P~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +. ...+|++.+..+|++||+..++ .+....+
T Consensus       392 ~~-~~~iRl~~~~~~t~~ei~~~i~-~l~~~l~  422 (425)
T PRK08088        392 PY-YNVLRILVPLTIEDAQIRQGLE-IIAQCFD  422 (425)
T ss_pred             CC-CCEEEEECCCCcCHHHHHHHHH-HHHHHHH
Confidence            22 3679999999999999999888 7765543

>PLN02651 cysteine desulfurase

Probab=80.17  E-value=8.1  Score=32.59  Aligned_cols=78  Identities=8%  Similarity=0.022  Sum_probs=48.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC--CCcccCC--CC--CC-eEEEEcCC--chHHHhc-c-ccc------cCC--------
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL--GLIVYGH--RD--SP-VVPVLVFF--FSKVGQT-S-IGL------GVE--------  100 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~--G~~~~~~--s~--SP-IiPV~~g~--~~~~~~~-a-~~i------~~P--------  100 (153)
                      .+..+++.++...++++.|.+.  |+.+.+.  .+  +| |+.+.+.+  .+.+... . +.+      ..+        
T Consensus       257 ~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~i~v~~g~~c~~~~~~~~~~~  336 (364)
T PLN02651        257 MDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVL  336 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCCEEEEchhhcCCCCCCcCHHH
Confidence            3666788888999999998753  7766552  11  24 88877753  2232222 1 111      111        


Q ss_pred             ---CCC--CCCceEEEEeeCCCCHHHHH
Q psy5049         101 ---QTA--LNDGLSLYESSHLRSANLWN  123 (153)
Q Consensus       101 ---tVP--~g~~RlRI~lsA~HT~edId  123 (153)
                         .+.  ...+-+|++++..+|+||||
T Consensus       337 ~~~g~~~~~~~~~vR~S~~~~~t~~did  364 (364)
T PLN02651        337 RALGVPEEMAHGSLRLGVGRFTTEEEVD  364 (364)
T ss_pred             HHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence               011  12468999999999999986

>PRK07683 aminotransferase A; Validated

Probab=80.07  E-value=18  Score=30.83  Aligned_cols=81  Identities=12%  Similarity=-0.001  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE-cC----CchH-HHhcc--------ccccCCCCCCCCceEEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL-VF----FFSK-VGQTS--------IGLGVEQTALNDGLSLYE  112 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~-~g----~~~~-~~~~a--------~~i~~PtVP~g~~RlRI~  112 (153)
                      .+.++++.++.+++.+.|.+.|+.+. .++...+-+. +.    ++.. +..++        .+..|.  +.+...+||+
T Consensus       286 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~--~~~~~~~Ri~  362 (387)
T PRK07683        286 KMMRHQYKKRRDYVYNRLISMGLDVE-KPTGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFS--EYGEGYVRLS  362 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccc-CCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhC--CCCCCeEEEE
Confidence            35688889999999999998887643 2333322121 11    1111 21221        222332  3346789999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHH
Q psy5049         113 SSHLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~  133 (153)
                      ++.  +++++...++ .|.++
T Consensus       363 ~~~--~~~~~~~al~-~l~~~  380 (387)
T PRK07683        363 YAY--SIETLKEGLD-RLEAF  380 (387)
T ss_pred             ecC--CHHHHHHHHH-HHHHH
Confidence            974  6888888666 55543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	153
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	8e-04
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	8e-04

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 49  RISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV 84
            I  L  NT Y + +L   G  + G  +SP++P+ +
Sbjct: 296 HIEKLWKNTDYAKAQLLDHGFDL-GATESPILPIFI 330

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 Length = 401

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 49  RISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV 84
               L  N R FR +++  G  +    D  ++PV++
Sbjct: 301 LRDRLWANARQFREQMSAAGFTL-AGADHAIIPVML 335

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	153
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	98.67
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	98.4
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	98.24
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	98.17
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	98.13
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	98.08
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	98.05
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	97.97
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	97.86
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	97.8
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	97.66
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	97.48
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	97.46
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	97.4
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	97.4
1iug_A	352	Putative aspartate aminotransferase; wild type, py	97.38
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	97.35
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	97.31
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	97.3
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	97.25
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	97.21
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	97.13
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	97.11
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	97.09
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	97.05
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	97.01
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	96.98
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	96.97
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	96.93
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	96.88
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	96.86
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	96.86
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	96.8
1svv_A	359	Threonine aldolase; structural genomics, structura	96.8
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	96.79
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	96.78
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	96.74
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	96.72
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	96.71
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	96.67
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	96.66
3nra_A	407	Aspartate aminotransferase; structural genomics, j	96.65
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	96.6
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	96.6
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	96.6
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	96.57
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	96.57
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	96.56
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	96.55
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	96.55
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	96.46
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	96.45
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	96.44
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	96.44
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	96.41
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	96.4
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	96.36
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	96.35
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	96.34
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	96.33
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	96.33
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	96.3
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	96.27
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	96.27
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	96.27
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	96.25
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	96.23
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	96.22
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	96.18
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	96.14
1z7d_A	433	Ornithine aminotransferase; structural genomics co	96.14
1vp4_A	425	Aminotransferase, putative; structural genomics, j	96.13
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	96.13
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	96.12
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	96.12
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	96.12
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	96.09
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	96.01
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	96.01
3rq1_A	418	Aminotransferase class I and II; structural genomi	95.99
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	95.99
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	95.98
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	95.97
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	95.94
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	95.93
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	95.86
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	95.85
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	95.83
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	95.83
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	95.77
2fnu_A	375	Aminotransferase; protein-product complex, structu	95.71
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	95.69
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	95.69
3ele_A	398	Amino transferase; RER070207001803, structural gen	95.68
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	95.62
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	95.56
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	95.54
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	95.54
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	95.53
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	95.52
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	95.51
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	95.5
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	95.46
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	95.44
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	95.36
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	95.33
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	95.27
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	95.23
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	95.23
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	95.21
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	95.18
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	95.12
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	95.12
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	95.1
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	95.07
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	95.06
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	95.05
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	95.02
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	94.98
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	94.95
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	94.94
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	94.87
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	94.83
1o69_A	394	Aminotransferase; structural genomics, unknown fun	94.81
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	94.77
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	94.77
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	94.76
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	94.72
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	94.61
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	94.5
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	94.49
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	94.44
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	94.39
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	94.37
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	94.36
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	94.31
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	94.31
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	94.29
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	94.28
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	94.19
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	94.17
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	94.15
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	94.13
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	94.13
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	94.11
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	94.09
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	94.05
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	93.99
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	93.95
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	93.95
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	93.93
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	93.87
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	93.65
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	93.64
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	93.52
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	93.45
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	93.44
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	93.38
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	93.29
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	93.18
3hmu_A	472	Aminotransferase, class III; structural genomics,	93.09
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	93.03
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	92.97
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	92.93
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	92.84
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	92.83
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	92.8
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	92.76
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	92.74
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	92.71
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	92.67
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	92.65
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	92.53
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	92.31
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	92.24
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	92.22
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	92.06
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	92.06
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	91.8
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	91.77
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	91.64
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	91.61
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	91.54
3pj0_A	359	LMO0305 protein; structural genomics, joint center	91.4
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	91.37
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	91.18
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	91.14
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	91.05
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	90.91
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	90.88
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	90.83
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	90.7
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	90.46
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	90.42
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	90.33
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	90.3
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	90.08
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	89.91
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	89.55
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	89.51
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	89.5
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	89.28
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	88.75
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	88.64
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	88.51
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	87.84
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	87.7
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	87.46
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	87.16
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	86.45
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	86.25
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	85.25
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	85.21
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	83.57
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	82.21
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	80.28

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=98.67  E-value=9.8e-08  Score=80.21  Aligned_cols=89  Identities=15%  Similarity=0.005  Sum_probs=73.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCC-CCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEee
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHR-DSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s-~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~ls  114 (153)
                      .++++++++++..+|++.|++.|+.+.+.+ .++++++.+++.....++.          .+..+|++|.+...+||+++
T Consensus       314 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~  393 (427)
T 2w8t_A          314 AHEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSIC  393 (427)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCSSEEEEEESSHHHHHHHHHHHHHTTEECEEECTTTSCTTCEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCEEEEEECCHHHHHHHHHHHHHCCeEEeeeCCCCCCCCCeEEEEEeC
Confidence            378999999999999999999898764345 6899999998754333332          45588999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHh
Q psy5049         115 HLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~  135 (153)
                      +.||++||+++++ +|+.+.+
T Consensus       394 ~~~t~e~i~~~~~-~l~~~l~  413 (427)
T 2w8t_A          394 AEHTPAQIQTVLG-MFQAAGR  413 (427)
T ss_dssp             TTCCHHHHHHHHH-HHHHHHH
T ss_pred             CCCCHHHHHHHHH-HHHHHHH
Confidence            9999999999999 8876654

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=98.40  E-value=2e-06  Score=71.26  Aligned_cols=88  Identities=13%  Similarity=0.008  Sum_probs=72.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      .++++++++++..++++.|++.|+.+.  +.++++.+.+++.....++.          .+..+|++|.+...+||+++.
T Consensus       306 ~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~  383 (409)
T 3kki_A          306 ADNRRQHLDRMARKLRIGLSQLGLTIR--SESQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNS  383 (409)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCCCC--CSSSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCccC--CCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccC
Confidence            368899999999999999999998873  56899999988754333332          455788899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc
Q psy5049         116 LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~~  136 (153)
                      .+|+|||+++++ +|+.+.+.
T Consensus       384 ~~t~e~i~~~~~-~l~~~l~~  403 (409)
T 3kki_A          384 DVNDEQIAKIIE-VCSDAVNY  403 (409)
T ss_dssp             TCCHHHHHHHHH-HHHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHhc
Confidence            999999999999 88766554

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=98.24  E-value=7.9e-06  Score=66.53  Aligned_cols=89  Identities=18%  Similarity=0.299  Sum_probs=72.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      .++.+++++++..++.+.|.+.|+.+. .+.++++.+.+.+.....++.          .+..||+++.+...+||+++.
T Consensus       297 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~  375 (399)
T 3tqx_A          297 GPQLRKQLQENSRYFRAGMEKLGFQLV-PGNHPIIPVMLGDAQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSA  375 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCBC-CCSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCCcC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeec
Confidence            478899999999999999999998774 577889988887653333332          445788889899999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc
Q psy5049         116 LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~~  136 (153)
                      .+|++|++++++ +|+.+.+.
T Consensus       376 ~~~~~~i~~~~~-~l~~~~~~  395 (399)
T 3tqx_A          376 VHTQQQLDRAIE-AFGQVGKK  395 (399)
T ss_dssp             TCCHHHHHHHHH-HHHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHHH
Confidence            999999999999 88776654

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=98.17  E-value=4.4e-06  Score=68.98  Aligned_cols=89  Identities=9%  Similarity=-0.167  Sum_probs=65.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCeEEEEcCCchHHH--hcc-------ccccCCCC--CCCCceEEEE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHR--DSPVVPVLVFFFSKVG--QTS-------IGLGVEQT--ALNDGLSLYE  112 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s--~SPIiPV~~g~~~~~~--~~a-------~~i~~PtV--P~g~~RlRI~  112 (153)
                      .++++++++++..++++.|.+.|+.+....  .+|+++.+..++....  ...       .+..+|+|  |.+..++||+
T Consensus       273 ~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis  352 (379)
T 3ke3_A          273 FDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTERDDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLG  352 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSCHHHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCCcchHHHHHHHHCCeEEeCCccccccccCcCCEEEEe
Confidence            368899999999999999999998765432  2787776655433221  111       23345665  6668999999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      ++..||++||+++++ +|+.+.+
T Consensus       353 ~~~~~t~~di~~~~~-~l~~~l~  374 (379)
T 3ke3_A          353 LFGLDKLTDIDGTVE-RFEKALD  374 (379)
T ss_dssp             CCSHHHHTCHHHHHH-HHHHHHH
T ss_pred             CCcCCCHHHHHHHHH-HHHHHHH
Confidence            999999999999998 7776543

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=98.13  E-value=1.3e-05  Score=65.75  Aligned_cols=87  Identities=10%  Similarity=0.112  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-----------ccccCCCCCCCCceEEEEeeC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS-----------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a-----------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      ++.+++++++..++.+.|.+.|+.+.+ +.++++++.+++.....++.           .+..+|.+|.|...+|++++.
T Consensus       301 ~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~  379 (401)
T 2bwn_A          301 QKLRDAQQMHAKVLKMRLKALGMPIID-HGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSP  379 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCBCC-CSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccC-CCCCeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeC
Confidence            678999999999999999988887653 56789999887532211111           334567777777899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q psy5049         116 LRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~  135 (153)
                      .+|++|++++++ +|+.+.+
T Consensus       380 ~~t~~~i~~~~~-~l~~~~~  398 (401)
T 2bwn_A          380 VHDLKQIDGLVH-AMDLLWA  398 (401)
T ss_dssp             TSCHHHHHHHHH-HHHHHC-
T ss_pred             CCCHHHHHHHHH-HHHHHHH
Confidence            999999999998 8876644

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=98.08  E-value=1.8e-05  Score=68.70  Aligned_cols=89  Identities=12%  Similarity=0.004  Sum_probs=68.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCC-CcccCC-CCCCeEEEEcCCch-----HHHhcc-------ccccCCCCCCCCceEE
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLG-LIVYGH-RDSPVVPVLVFFFS-----KVGQTS-------IGLGVEQTALNDGLSL  110 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G-~~~~~~-s~SPIiPV~~g~~~-----~~~~~a-------~~i~~PtVP~g~~RlR  110 (153)
                      ...+++++..++..+|.+.|.+.| +.+... +..|++.+.+.+..     ...+..       ....+|+++.+...+|
T Consensus       339 g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lR  418 (502)
T 3hbx_A          339 GYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLR  418 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEE
Confidence            346788999999999999999987 766543 46899988875421     222222       3346788888999999


Q ss_pred             EEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         111 YESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       111 I~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      |+++..+|+||++.+++ .|+.+.
T Consensus       419 isv~~~~t~edid~li~-~L~~~l  441 (502)
T 3hbx_A          419 VVIREDFSRTLAERLVI-DIEKVM  441 (502)
T ss_dssp             EECCTTCCHHHHHHHHH-HHHHHH
T ss_pred             EEeCCCCCHHHHHHHHH-HHHHHH
Confidence            99999999999999998 776544

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=98.05  E-value=1.3e-05  Score=69.03  Aligned_cols=90  Identities=6%  Similarity=-0.206  Sum_probs=69.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcC-CchHHHhcc-------ccccCCCCCCCCceEEEEeeC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVF-FFSKVGQTS-------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g-~~~~~~~~a-------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      ...+++++..+++++|++.|++. |+.+.....++|+.+.+. ++....++.       .....|+++.|...+|+++++
T Consensus       370 g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~  449 (475)
T 3k40_A          370 NLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICS  449 (475)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCC
Confidence            34778899999999999999987 887765566889888874 333333332       445678889999999999987


Q ss_pred             CC-CHHHHHHHHHHHHHHHHh
Q psy5049         116 LR-SANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       116 ~H-T~edId~L~~~~L~~~~~  135 (153)
                      .+ |++||+++++ +++.+.+
T Consensus       450 ~~tt~~di~~~~~-~i~~~~~  469 (475)
T 3k40_A          450 RFTQSEDMEYSWK-EVSAAAD  469 (475)
T ss_dssp             TTCCHHHHHHHHH-HHHHHHH
T ss_pred             CCCCHHHHHHHHH-HHHHHHH
Confidence            76 8999999998 7766553

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=97.97  E-value=2.5e-05  Score=67.26  Aligned_cols=89  Identities=8%  Similarity=-0.069  Sum_probs=68.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC-chHHHhcc-------ccccCCCCCCCCceEEEEeeCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF-FSKVGQTS-------IGLGVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~-~~~~~~~a-------~~i~~PtVP~g~~RlRI~lsA~  116 (153)
                      ..+++++..+++++|++.|++. |+.+.....++++.+.+.. +....++.       ..+..|+++.|...+|+++++.
T Consensus       378 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~  457 (481)
T 4e1o_A          378 LQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQ  457 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCC
Confidence            4678889999999999999987 8877655678898887743 33333332       3456688888999999999988


Q ss_pred             C-CHHHHHHHHHHHHHHHHh
Q psy5049         117 R-SANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       117 H-T~edId~L~~~~L~~~~~  135 (153)
                      + |++||+++++ +++.+.+
T Consensus       458 ~tt~~di~~~~~-~i~~~~~  476 (481)
T 4e1o_A          458 FTTRDDILRDWN-LIRDAAT  476 (481)
T ss_dssp             TCCHHHHHHHHH-HHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHH
Confidence            7 8999999998 7766543

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=97.86  E-value=0.00014  Score=59.46  Aligned_cols=89  Identities=15%  Similarity=0.136  Sum_probs=68.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      .++.+++++++..++.+.|.+.|+.+. .+.++++.+-+.+.....++.          .+..+|.+|.+...+||+++.
T Consensus       298 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~  376 (401)
T 1fc4_A          298 GSELRDRLWANARQFREQMSAAGFTLA-GADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSA  376 (401)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCBC-CSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCccc-CCCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCC
Confidence            468899999999999999999898765 466788888776532222221          233566777777899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc
Q psy5049         116 LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~~  136 (153)
                      .+|++|++++++ +|+.+.+.
T Consensus       377 ~~~~~~i~~~~~-~l~~~~~~  396 (401)
T 1fc4_A          377 AHTPEQITRAVE-AFTRIGKQ  396 (401)
T ss_dssp             TCCHHHHHHHHH-HHHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHHH
Confidence            999999999999 88776554

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=97.80  E-value=0.00017  Score=59.01  Aligned_cols=89  Identities=16%  Similarity=0.184  Sum_probs=66.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      ..+++++++++..++.+.|++.|+.+. .+.++++.+.+.+.....++.          .+..++.+|.+...+||+++.
T Consensus       293 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~  371 (398)
T 3a2b_A          293 EPEHIEKLWKNTDYAKAQLLDHGFDLG-ATESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMA  371 (398)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHTTCCBC-SCCSSEEEEECCCHHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCT
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCcC-CCCCCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeC
Confidence            357899999999999999999898764 356789988886532222221          223445556667889999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc
Q psy5049         116 LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~~  136 (153)
                      .+|++|++++++ +|+.+.+.
T Consensus       372 ~~~~e~i~~~~~-~l~~~l~~  391 (398)
T 3a2b_A          372 THTYDQIDEAIE-KMVKVFKQ  391 (398)
T ss_dssp             TCCHHHHHHHHH-HHHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHHH
Confidence            999999999999 77765543

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=97.66  E-value=0.00013  Score=59.29  Aligned_cols=85  Identities=15%  Similarity=0.030  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA~  116 (153)
                      ++.+++++++..++.+.|.+.|+.+. .+.++++.+.+.+.....++.          .+..+|.+|.+...+||+++..
T Consensus       289 ~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~  367 (384)
T 1bs0_A          289 DARREKLAALITRFRAGVQDLPFTLA-DSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAA  367 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSCEEC-SCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccc-CCCCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCC
Confidence            57889999999999999999998764 356788777775422222221          3335566677788999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy5049         117 RSANLWNRPHSPSLMAV  133 (153)
Q Consensus       117 HT~edId~L~~~~L~~~  133 (153)
                      +|++|++++++ +|+.+
T Consensus       368 ~~~~~i~~~~~-~l~~~  383 (384)
T 1bs0_A          368 HEMQDIDRLLE-VLHGN  383 (384)
T ss_dssp             CCHHHHHHHHH-HHHHH
T ss_pred             CCHHHHHHHHH-HHHhh
Confidence            99999999888 76543

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=97.48  E-value=0.00059  Score=59.83  Aligned_cols=86  Identities=15%  Similarity=0.000  Sum_probs=61.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCCc----hHHHhcc----c--------cccCCCCCCCCce
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFFF----SKVGQTS----I--------GLGVEQTALNDGL  108 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~~----~~~~~~a----~--------~i~~PtVP~g~~R  108 (153)
                      .+++++++++|+++|++.|.+.|+.+. +.+++++++|-+++.    ..+.+..    +        ..++|.+   .++
T Consensus       333 ~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~---~~~  409 (490)
T 2a7v_A          333 FREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAIT---PGG  409 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSS---CSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCC---CCc
Confidence            367889999999999999999999764 235689999988643    2222222    1        1234554   478


Q ss_pred             EEEEeeC----CCCHHHHHHHHHHHHHHHHh
Q psy5049         109 SLYESSH----LRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       109 lRI~lsA----~HT~edId~L~~~~L~~~~~  135 (153)
                      +|+...|    .++++|++++++ ++..+..
T Consensus       410 iRig~~a~t~~g~~~~d~~~~~~-~i~~~l~  439 (490)
T 2a7v_A          410 LRLGAPALTSRQFREDDFRRVVD-FIDEGVN  439 (490)
T ss_dssp             EEEESHHHHHTTCCHHHHHHHHH-HHHHHHH
T ss_pred             eEecccccccCCCCHHHHHHHHH-HHHHHHH
Confidence            9997644    789999999988 7755543

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=97.46  E-value=0.00092  Score=53.94  Aligned_cols=87  Identities=6%  Similarity=-0.159  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCC-C-cccCC---CCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceEEEEeeC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLG-L-IVYGH---RDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G-~-~~~~~---s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      ++++++.+++..++.+.|.+.| + .+...   ...+++++.+++.....++.      ..+..|..+. .+.+||+++.
T Consensus       262 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~-~~~iRis~~~  340 (362)
T 2c0r_A          262 EGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRS-VGGLRASIYN  340 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTT-TCSEEEECCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCC-CCEEEEECCC
Confidence            7789999999999999999988 6 54221   13568888776532222222      1122343222 3579999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q psy5049         116 LRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~  135 (153)
                      .+|+||++++++ +|+.+.+
T Consensus       341 ~~~~e~i~~l~~-~l~~~~~  359 (362)
T 2c0r_A          341 AVPYESCEALVQ-FMEHFKR  359 (362)
T ss_dssp             TSCHHHHHHHHH-HHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHH
Confidence            999999999999 8876643

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=97.40  E-value=0.00094  Score=53.09  Aligned_cols=88  Identities=11%  Similarity=-0.052  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCC--CCCC-eEEEEcCC-----chHHHhcc---ccccCCCCCCCCceEEEEeeC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGH--RDSP-VVPVLVFF-----FSKVGQTS---IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~--s~SP-IiPV~~g~-----~~~~~~~a---~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      ++.+++++++..++++.|.+.|+.+...  +.++ ++.+.+.+     .....+..   .....|..+.+...+|++++.
T Consensus       265 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~  344 (366)
T 1m32_A          265 AARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIG  344 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCS
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCC
Confidence            5688999999999999999888876432  1356 66666653     22222222   222233333367899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q psy5049         116 LRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~  135 (153)
                      .+|++|++++++ +|+.+.+
T Consensus       345 ~~~~~~i~~~~~-~l~~~~~  363 (366)
T 1m32_A          345 EVYAADITALLT-AIRTAMY  363 (366)
T ss_dssp             SCCHHHHHHHHH-HHHHHCT
T ss_pred             CCCHHHHHHHHH-HHHHHHH
Confidence            999999999998 7776643

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=97.40  E-value=0.00056  Score=58.55  Aligned_cols=89  Identities=7%  Similarity=-0.116  Sum_probs=65.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCch--------HHHhcc----ccccCCCCCCCCceEEEE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFFS--------KVGQTS----IGLGVEQTALNDGLSLYE  112 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~~--------~~~~~a----~~i~~PtVP~g~~RlRI~  112 (153)
                      ..++.+++.++..+|.+.|++. |+.+.+.+.++++.+.+.+..        ......    ..+..+++..|...+||+
T Consensus       392 ~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis  471 (497)
T 2qma_A          392 LGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFT  471 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEE
Confidence            3567888999999999999986 776644566788888775431        111111    444556666778899999


Q ss_pred             e-eCCCCHHHHHHHHHHHHHHHHh
Q psy5049         113 S-SHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       113 l-sA~HT~edId~L~~~~L~~~~~  135 (153)
                      + +..+|++||+++++ .++.+.+
T Consensus       472 ~~~~~~t~edi~~~~~-~l~~~~~  494 (497)
T 2qma_A          472 ILNPCLTTSDFESLLS-KINMLAV  494 (497)
T ss_dssp             CCCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             ecCCCCCHHHHHHHHH-HHHHHHH
Confidence            8 89999999999998 7766543

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=97.38  E-value=0.00076  Score=53.60  Aligned_cols=90  Identities=10%  Similarity=-0.041  Sum_probs=62.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCC-CCCeEEEEcCC---chHHHhcc----ccccCCCCCCCCceEEEEeeCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHR-DSPVVPVLVFF---FSKVGQTS----IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s-~SPIiPV~~g~---~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      .++.+++++++..++.+.|++.|+.+.... ...++.+.+.+   .....+..    +.+++-..+.+...+||+++..+
T Consensus       250 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~  329 (352)
T 1iug_A          250 LEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAY  329 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccC
Confidence            357889999999999999998888764321 35688887752   22222222    22222222345678999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhc
Q psy5049         118 SANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       118 T~edId~L~~~~L~~~~~~  136 (153)
                      |++|++++++ +|+.+.+.
T Consensus       330 ~~~~i~~~~~-~l~~~~~~  347 (352)
T 1iug_A          330 DRYEALGVAG-MFREVLEE  347 (352)
T ss_dssp             CHHHHHHHHH-HHHHHHHH
T ss_pred             CHHHHHHHHH-HHHHHHHH
Confidence            9999999999 88766544

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=97.35  E-value=0.00041  Score=60.26  Aligned_cols=89  Identities=8%  Similarity=-0.075  Sum_probs=61.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccC--CCCCCeEEEEcCCch-------------------HHHhcc-----cccc
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYG--HRDSPVVPVLVFFFS-------------------KVGQTS-----IGLG   98 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~s~SPIiPV~~g~~~-------------------~~~~~a-----~~i~   98 (153)
                      ..++++++.+++++|++.|++. |+.+..  .+..+++.+.+....                   ...+..     ..+.
T Consensus       387 l~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~  466 (511)
T 3vp6_A          387 FENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG  466 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            3778999999999999999986 887754  355777666543221                   111111     2334


Q ss_pred             CCCCCCCCceEEEEe-eCCCCHHHHHHHHHHHHHHHHh
Q psy5049          99 VEQTALNDGLSLYES-SHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus        99 ~PtVP~g~~RlRI~l-sA~HT~edId~L~~~~L~~~~~  135 (153)
                      ++.++.+...+|+++ +..+|++||+++++ +++.+.+
T Consensus       467 ~~~~~~~~~~lRi~~~~~~~t~~di~~ll~-~i~~~~~  503 (511)
T 3vp6_A          467 YQPQGDKANFFRMVISNPAATQSDIDFLIE-EIERLGQ  503 (511)
T ss_dssp             EEEETTEEEEEEECCCCTTCCHHHHHHHHH-HHHHHHC
T ss_pred             EEEeCCceEEEEEEecCCCCCHHHHHHHHH-HHHHHHH
Confidence            555555556799999 89999999999988 7766554

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=97.31  E-value=0.001  Score=56.11  Aligned_cols=88  Identities=8%  Similarity=-0.053  Sum_probs=62.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC-CcccCC----CCCCeEEEEcCCc-------hHHHhcc----c---cccCCCCCCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG-LIVYGH----RDSPVVPVLVFFF-------SKVGQTS----I---GLGVEQTALND  106 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G-~~~~~~----s~SPIiPV~~g~~-------~~~~~~a----~---~i~~PtVP~g~  106 (153)
                      ..+++++..++..++.+.|.+.+ +.+...    +..+++.+.+.+.       ....+..    .   ....|+...+.
T Consensus       325 ~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~  404 (452)
T 2dgk_A          325 YTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDI  404 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCe
Confidence            35678889999999999999875 665422    3467888777542       2222221    2   22345555567


Q ss_pred             ceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         107 GLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       107 ~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      ..+||+++..+|+||+|++++ +|+.+.
T Consensus       405 ~~lRis~~~~~t~e~id~li~-~l~~~~  431 (452)
T 2dgk_A          405 VVMRIMCRRGFEMDFAELLLE-DYKASL  431 (452)
T ss_dssp             EEEEEECCTTCCHHHHHHHHH-HHHHHH
T ss_pred             EEEEEEecCCCCHHHHHHHHH-HHHHHH
Confidence            899999999999999999999 776554

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=97.30  E-value=0.0015  Score=52.58  Aligned_cols=88  Identities=10%  Similarity=0.069  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCC---CCCeEEEEcCC---chHHHhcc----ccccCCCCCCCCceEEEEeeCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHR---DSPVVPVLVFF---FSKVGQTS----IGLGVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s---~SPIiPV~~g~---~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~  116 (153)
                      ++++++++++..++.+.|.+.|+.+....   .++++.+.+.+   .....+..    +.+.+-..+.+...+||+++..
T Consensus       280 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~  359 (386)
T 2dr1_A          280 EKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGY  359 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCC
Confidence            57899999999999999998888764321   35788887753   22222222    2222211223457899999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q psy5049         117 RSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       117 HT~edId~L~~~~L~~~~~  135 (153)
                      +|++|++++++ +|+.+.+
T Consensus       360 ~~~~~i~~~~~-~l~~~~~  377 (386)
T 2dr1_A          360 MKFEDIQEMLD-NLREVIN  377 (386)
T ss_dssp             CCHHHHHHHHH-HHHHHHH
T ss_pred             CCHHHHHHHHH-HHHHHHH
Confidence            99999999998 7766543

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=97.25  E-value=0.0025  Score=51.02  Aligned_cols=86  Identities=10%  Similarity=-0.070  Sum_probs=61.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc--ccc-cCCCCCCCCceEEEEeeCCCCHHH
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS--IGL-GVEQTALNDGLSLYESSHLRSANL  121 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a--~~i-~~PtVP~g~~RlRI~lsA~HT~ed  121 (153)
                      ...+++++++++..++.+.|++.|+.+...+.++++-+.+.+.....+..  ..| ..|.-  ....+||+++..+|+||
T Consensus       306 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~--~~~~~Ri~~~~~~~~e~  383 (397)
T 3f9t_A          306 GQRKIVNECMENTLYLYKKLKENNFKPVIEPILNIVAIEDEDYKEVCKKLRDRGIYVSVCN--CVKALRIVVMPHIKREH  383 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEEEECTTHHHHHHHHHHTTCBCEECS--SSSEEEEECCTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCCccEEEEEeCCHHHHHHHHHhCCeEEeccC--CCCEEEEEEcCCCCHHH
Confidence            34678889999999999999999987545566787766665533333332  222 22221  13789999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy5049         122 WNRPHSPSLMAV  133 (153)
Q Consensus       122 Id~L~~~~L~~~  133 (153)
                      ++++++ +|+.+
T Consensus       384 i~~~~~-~l~~~  394 (397)
T 3f9t_A          384 IDNFIE-ILNSI  394 (397)
T ss_dssp             HHHHHH-HHHHH
T ss_pred             HHHHHH-HHHHh
Confidence            999988 77654

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=97.21  E-value=0.0012  Score=52.42  Aligned_cols=87  Identities=5%  Similarity=-0.070  Sum_probs=60.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCC----CCCCeEEEEcCC-chHHHhcc----ccccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGH----RDSPVVPVLVFF-FSKVGQTS----IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~----s~SPIiPV~~g~-~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      .++++++++++..++.+.|.+. |+.+...    ....++.+.+.+ .....+..    +.+++-..+.+...+||+++.
T Consensus       264 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~  343 (362)
T 3ffr_A          264 ADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSKKETQIRIANFP  343 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCC
Confidence            3678899999999999999998 7765331    125677777664 23333222    333322224456889999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~  133 (153)
                      .+|+||++++++ +|+.+
T Consensus       344 ~~~~e~i~~l~~-~l~~~  360 (362)
T 3ffr_A          344 AHSLEQVHKLVQ-TLKEK  360 (362)
T ss_dssp             TSCHHHHHHHHH-HHHHH
T ss_pred             CCCHHHHHHHHH-HHHHH
Confidence            999999999998 77665

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=97.13  E-value=0.0038  Score=50.36  Aligned_cols=85  Identities=9%  Similarity=-0.029  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC--chHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF--FSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSAN  120 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~--~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~e  120 (153)
                      .+++++++++..++.+.|.+.|+.+. .+.+..+.+.+.+  .....+..    +.+++-..+.+...+||+++   |++
T Consensus       264 ~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~  339 (360)
T 3hdo_A          264 SECCRRIRETREWFTTELRSIGYDVI-PSQGNYLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TRE  339 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEC-CCSSSEEEEECTTCCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEc-CCCccEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHH
Confidence            67888999999999999999888764 4667777776653  22322222    22322222556789999987   999


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy5049         121 LWNRPHSPSLMAVFRG  136 (153)
Q Consensus       121 dId~L~~~~L~~~~~~  136 (153)
                      |+|++++ +|+.+.+.
T Consensus       340 e~~~l~~-al~~~~~~  354 (360)
T 3hdo_A          340 EMEQTLA-ALKEIGEG  354 (360)
T ss_dssp             HHHHHHH-HHHHHHC-
T ss_pred             HHHHHHH-HHHHHhcc
Confidence            9999999 88887764

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=97.11  E-value=0.00016  Score=58.81  Aligned_cols=115  Identities=10%  Similarity=-0.081  Sum_probs=62.4

Q ss_pred             HHHHHHhHHHHHHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE
Q psy5049           4 ISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL   83 (153)
Q Consensus         4 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~   83 (153)
                      .++..++.+|+++.|.++|+.+.+......+.+..-.+...           ....+.+.|.+.|+.+......|   +.
T Consensus       250 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~L~~~gI~v~~~~~~~---~~  315 (373)
T 3frk_A          250 NEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRSE-----------KRDELQKYLNNNGIGTLIHYPIP---IH  315 (373)
T ss_dssp             HHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEES-----------SHHHHHHHHHHTTBCCBCSCSSC---GG
T ss_pred             HHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEeC-----------CHHHHHHHHHHCCCCcccCcCCc---cc
Confidence            56778899999999999996553321111111111111111           12346677777887652111112   11


Q ss_pred             cCCchHHHhcc--ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049          84 VFFFSKVGQTS--IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus        84 ~g~~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      ..  .....+.  ....+++.+..+..+|++++..+|+||||++++ +++++..
T Consensus       316 ~~--~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~-~l~~~~~  366 (373)
T 3frk_A          316 LQ--QAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVID-KINAWKL  366 (373)
T ss_dssp             GS--GGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHH-HHHTCC-
T ss_pred             cC--hHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHH-HHHHHhh
Confidence            10  0000010  111122334455899999999999999999998 7776543

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=97.09  E-value=0.0033  Score=51.60  Aligned_cols=88  Identities=8%  Similarity=-0.187  Sum_probs=61.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccC--C-CCCC-eEEEEcCC---chHHHhcc----ccccCCCCCCCCceEEEEe
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYG--H-RDSP-VVPVLVFF---FSKVGQTS----IGLGVEQTALNDGLSLYES  113 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~-s~SP-IiPV~~g~---~~~~~~~a----~~i~~PtVP~g~~RlRI~l  113 (153)
                      .++.+++..++..++.+.|.+. |+.+..  . +.++ ++.+.+.+   .....+..    +.++++..+.+...+||++
T Consensus       296 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~  375 (398)
T 2fyf_A          296 LDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAM  375 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHCCcEEecCcccCCCCEEEEEe
Confidence            3667889999999999999988 776542  1 1367 88887743   22332222    4444433334567899999


Q ss_pred             eCCCCHHHHHHHHHHHHHHHH
Q psy5049         114 SHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~  134 (153)
                      +..+|+||++++++ +|+.+.
T Consensus       376 ~~~~t~e~i~~~~~-~l~~~l  395 (398)
T 2fyf_A          376 FPAVEPDDVSALTE-CVDWVV  395 (398)
T ss_dssp             CTTSCHHHHHHHHH-HHHHHH
T ss_pred             cCCCCHHHHHHHHH-HHHHHH
Confidence            99999999999998 777654

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=97.05  E-value=0.0029  Score=51.49  Aligned_cols=92  Identities=14%  Similarity=0.027  Sum_probs=63.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCC---CCeEEEEcCC---chHHHhcc-----ccccCCCCCCCCceEEEEee
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRD---SPVVPVLVFF---FSKVGQTS-----IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~---SPIiPV~~g~---~~~~~~~a-----~~i~~PtVP~g~~RlRI~ls  114 (153)
                      .++.++++.++..++.+.|.+.|+.+.....   ..++.+.+.+   .....+..     +.+++-.-+.+...+||+++
T Consensus       288 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~  367 (416)
T 3isl_A          288 LETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTM  367 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecc
Confidence            3688899999999999999998887643221   4577777742   22222211     33333223456789999999


Q ss_pred             CCCCHHH-HHHHHHHHHHHHHhcCC
Q psy5049         115 HLRSANL-WNRPHSPSLMAVFRGGG  138 (153)
Q Consensus       115 A~HT~ed-Id~L~~~~L~~~~~~~~  138 (153)
                      ..+|++| ++++++ +|+.+.+..+
T Consensus       368 ~~~~~~e~i~~~~~-~l~~~~~~~~  391 (416)
T 3isl_A          368 GYSCRKENVLFVLA-GLEAVLLRHN  391 (416)
T ss_dssp             GGGCSHHHHHHHHH-HHHHHHHHTT
T ss_pred             cCCCcHHHHHHHHH-HHHHHHHHcC
Confidence            9888888 999999 8877765543

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=97.01  E-value=0.0025  Score=50.36  Aligned_cols=89  Identities=8%  Similarity=-0.105  Sum_probs=59.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCeEEEEcCC---chHHHhcc----ccccCCCCCCCCceEEEEeeCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHR--DSPVVPVLVFF---FSKVGQTS----IGLGVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s--~SPIiPV~~g~---~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~  116 (153)
                      .++.+++++++..++++.|++.|+.+....  ...++.+.+.+   .....+..    +.+++-..+.+...+|+++++.
T Consensus       253 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~  332 (353)
T 2yrr_A          253 VAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPEGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGE  332 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEEEECCCCCCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCcc
Confidence            356789999999999999998888764322  34566676642   22232222    2222211123457899999999


Q ss_pred             CCHHHHH-HHHHHHHHHHHh
Q psy5049         117 RSANLWN-RPHSPSLMAVFR  135 (153)
Q Consensus       117 HT~edId-~L~~~~L~~~~~  135 (153)
                      +|++|++ ++++ +|+.+.+
T Consensus       333 ~~~~~~~~~~~~-~l~~~l~  351 (353)
T 2yrr_A          333 GARREAYQAFLK-ALDRALA  351 (353)
T ss_dssp             GSCHHHHHHHHH-HHHHHHH
T ss_pred             CCHHHHHHHHHH-HHHHHHh
Confidence            9999999 9988 7776543

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=96.98  E-value=0.0021  Score=53.58  Aligned_cols=89  Identities=15%  Similarity=0.072  Sum_probs=60.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC--CchHHHh-cc----ccccCCC--CCCCCceEEEEeeCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF--FFSKVGQ-TS----IGLGVEQ--TALNDGLSLYESSHL  116 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g--~~~~~~~-~a----~~i~~Pt--VP~g~~RlRI~lsA~  116 (153)
                      .++.+++++++..++++.|++.|+.+.....++++.+-+.  +...... +.    +.+.+..  -+.+...+||++.. 
T Consensus       343 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-  421 (449)
T 3qgu_A          343 MNAMIKFYKENAQILKTTFTEMGFSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-  421 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-
Confidence            4678899999999999999999987754445788888775  2222221 11    2222111  14567999999654 


Q ss_pred             CCHHHHHHHHHHHHHHHHhcC
Q psy5049         117 RSANLWNRPHSPSLMAVFRGG  137 (153)
Q Consensus       117 HT~edId~L~~~~L~~~~~~~  137 (153)
                       |+|||+++++ .|+.+.+..
T Consensus       422 -~~e~i~~~l~-~l~~~~~~~  440 (449)
T 3qgu_A          422 -SRENILEAVR-RFKEAYGKR  440 (449)
T ss_dssp             -CHHHHHHHHH-HHHHHHC--
T ss_pred             -CHHHHHHHHH-HHHHHHHhc
Confidence             9999999998 777666543

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=96.97  E-value=0.0079  Score=48.10  Aligned_cols=89  Identities=17%  Similarity=0.033  Sum_probs=60.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCC----CCCeEEEEcCC--chHHHhcc----ccccCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHR----DSPVVPVLVFF--FSKVGQTS----IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s----~SPIiPV~~g~--~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      .++.+++++++..++.+.|.+.|+.+....    ...++.+.+.+  .....+..    ..++ |........+||++..
T Consensus       264 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~-~g~~~~~~~iRi~~~~  342 (384)
T 3zrp_A          264 IENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKVADPQKVLAGTVNEGVEFA-PGVHPAFKYFRIGHMG  342 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSSSCHHHHHHHHHTTTCCCE-ECCCTTCCEEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCCCCHHHHHHHHHHCCEEEe-cCCCCCcCEEEEeccc
Confidence            367889999999999999999888764322    14566666653  22222222    2222 2210001789999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc
Q psy5049         116 LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~~  136 (153)
                      .+|+||++++++ +|+.+.+.
T Consensus       343 ~~~~e~i~~~~~-~l~~~l~~  362 (384)
T 3zrp_A          343 WVTPNDAIIAIS-VIERTLRK  362 (384)
T ss_dssp             SCCHHHHHHHHH-HHHHHHHH
T ss_pred             cCCHHHHHHHHH-HHHHHHHH
Confidence            999999999999 88766554

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=96.93  E-value=0.0053  Score=50.99  Aligned_cols=87  Identities=9%  Similarity=-0.009  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCch------HHHhcc--------ccccCC--CCCCCCceEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFS------KVGQTS--------IGLGVE--QTALNDGLSL  110 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~------~~~~~a--------~~i~~P--tVP~g~~RlR  110 (153)
                      .+.+++++++..++++.|.+.|+.+.....+.++.+.+++..      ...+++        ..+.+.  ..+.+...+|
T Consensus       328 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iR  407 (435)
T 3piu_A          328 AENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFR  407 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEE
Confidence            567889999999999999999987644333478888886521      111111        222211  1145678999


Q ss_pred             EEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         111 YESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       111 I~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      |+++.. |++||+++++ .|..+.+
T Consensus       408 i~~~~~-~~e~i~~~l~-~l~~~l~  430 (435)
T 3piu_A          408 VCFANL-PERTLDLAMQ-RLKAFVG  430 (435)
T ss_dssp             EECSSS-CHHHHHHHHH-HHHHHHH
T ss_pred             EEeeCC-CHHHHHHHHH-HHHHHHH
Confidence            999444 9999999998 7766543

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=96.88  E-value=0.012  Score=47.02  Aligned_cols=85  Identities=7%  Similarity=-0.019  Sum_probs=60.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC-chHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHH
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF-FSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSAN  120 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~-~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~e  120 (153)
                      ..+++++++++..++.+.|.+.|+.+. .+.+.++.+-+.. .....+..    +.++ ...+.+...+||+++   |++
T Consensus       262 ~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~---~~~  336 (354)
T 3ly1_A          262 ITYSKKSNDVSRQILLKALEDLKLPYL-PSEGNFVFHQLVVPLKDYQTHMADAGVLIG-RAFPPADNWCRISLG---TPQ  336 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCBC-CCCSSEEEEECSSCHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC---CHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCeEC-CCCceEEEEECCCCHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC---CHH
Confidence            367788999999999999998888764 4567777776653 33333322    3333 223336789999976   899


Q ss_pred             HHHHHHHHHHHHHHhc
Q psy5049         121 LWNRPHSPSLMAVFRG  136 (153)
Q Consensus       121 dId~L~~~~L~~~~~~  136 (153)
                      |++++++ +|+.+.+.
T Consensus       337 ~i~~~~~-~l~~~l~~  351 (354)
T 3ly1_A          337 EMQWVAD-TMREFRKK  351 (354)
T ss_dssp             HHHHHHH-HHHHHHHT
T ss_pred             HHHHHHH-HHHHHHHh
Confidence            9999999 88776654

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=96.86  E-value=0.005  Score=49.76  Aligned_cols=89  Identities=10%  Similarity=0.002  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCC----CCCeEEEEcCC---chHHHhcc-----ccccCCCCCCCCceEEEEee
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHR----DSPVVPVLVFF---FSKVGQTS-----IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s----~SPIiPV~~g~---~~~~~~~a-----~~i~~PtVP~g~~RlRI~ls  114 (153)
                      ++.+++++++..++++.|.+.|+.+...+    ..+++.+.+.+   .....+..     +.+++-..+.+...+||++.
T Consensus       269 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~  348 (392)
T 2z9v_A          269 EAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGRGETLGKLTRIGHM  348 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCc
Confidence            56789999999999999998888764312    36777777742   22222221     22222112345688999987


Q ss_pred             C-CCCHHHHHHHHHHHHHHHHhc
Q psy5049         115 H-LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       115 A-~HT~edId~L~~~~L~~~~~~  136 (153)
                      + .+|++|++++++ +|+.+.+.
T Consensus       349 ~~~~~~~~i~~~~~-~l~~~~~~  370 (392)
T 2z9v_A          349 GPTAQPIYAIAALT-ALGGAMNA  370 (392)
T ss_dssp             GGGCSHHHHHHHHH-HHHHHHHH
T ss_pred             ccccCHHHHHHHHH-HHHHHHHH
Confidence            7 999999999999 88766544

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=96.86  E-value=0.0038  Score=51.73  Aligned_cols=85  Identities=15%  Similarity=0.079  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc--hHHHh-cc----cccc---CCCCCCCCceEEEEeeCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF--SKVGQ-TS----IGLG---VEQTALNDGLSLYESSHL  116 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~--~~~~~-~a----~~i~---~PtVP~g~~RlRI~lsA~  116 (153)
                      ++++++++++..++++.|.+.|+.+.+...++++.+-+++.  ..... +.    +.+.   .+. |.|...+||++.  
T Consensus       332 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~-~~~~~~iRis~~--  408 (432)
T 3ei9_A          332 HKVIGFYKENTNIIIDTFTSLGYDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFG-PGGEGFVRVSAF--  408 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGC-GGGTTEEEEECC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhC-CCCCCEEEEEec--
Confidence            67889999999999999999998775445678888887632  22222 11    2222   222 567899999984  


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q psy5049         117 RSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       117 HT~edId~L~~~~L~~~~~  135 (153)
                      .++|+|++.++ .|+.-..
T Consensus       409 ~~~e~l~~~l~-rl~~~~~  426 (432)
T 3ei9_A          409 GHRENILEACR-RFKQLYK  426 (432)
T ss_dssp             SCHHHHHHHHH-HHHHHHT
T ss_pred             CCHHHHHHHHH-HHHHHhh
Confidence            49999999877 6655443

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=96.80  E-value=0.0026  Score=51.19  Aligned_cols=89  Identities=9%  Similarity=-0.014  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC---chHHHhcc--c-cc-cCCC-CCCCCceEEEEeeCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF---FSKVGQTS--I-GL-GVEQ-TALNDGLSLYESSHLRS  118 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~---~~~~~~~a--~-~i-~~Pt-VP~g~~RlRI~lsA~HT  118 (153)
                      ++.+++.+++..++++.|.+.|+.+.....++.+..+..+   .....+..  . .| ..|. -+.+...+||+++..+|
T Consensus       277 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t  356 (376)
T 3f0h_A          277 DAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPTTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALT  356 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEESSSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCC
Confidence            6688888999999999999988765433334444333322   22222221  1 22 2222 13456789999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q psy5049         119 ANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       119 ~edId~L~~~~L~~~~~~  136 (153)
                      +||++++++ +|+.+.+.
T Consensus       357 ~e~i~~~~~-~l~~~l~~  373 (376)
T 3f0h_A          357 HEDNTTLVN-AFKDLQKR  373 (376)
T ss_dssp             HHHHHHHHH-HHHHHHHT
T ss_pred             HHHHHHHHH-HHHHHHHh
Confidence            999999999 88766543

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=96.80  E-value=0.0036  Score=49.65  Aligned_cols=84  Identities=10%  Similarity=-0.062  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc--c-cc-cCCCCCCCCceEEEEeeCCCCHHHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS--I-GL-GVEQTALNDGLSLYESSHLRSANLW  122 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a--~-~i-~~PtVP~g~~RlRI~lsA~HT~edI  122 (153)
                      .+.++++.++..++.+.|+..|+.+.+.+.++++.+-+.  ....+..  . .| .++..+.+...+||+++..+|++|+
T Consensus       267 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i  344 (359)
T 1svv_A          267 FELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILE--NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKEC  344 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECBEEE--HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCCeEEccCCccceEEEEcC--HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHH
Confidence            578899999999999999766877654445665443332  2222222  1 22 2555456678899999999999999


Q ss_pred             HHHHHHHHHHH
Q psy5049         123 NRPHSPSLMAV  133 (153)
Q Consensus       123 d~L~~~~L~~~  133 (153)
                      +++++ +|+.+
T Consensus       345 ~~~~~-~l~~~  354 (359)
T 1svv_A          345 HRFVE-VLKRL  354 (359)
T ss_dssp             HHHHH-HHHHC
T ss_pred             HHHHH-HHHHH
Confidence            99888 76654

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=96.79  E-value=0.0092  Score=49.95  Aligned_cols=87  Identities=9%  Similarity=-0.023  Sum_probs=55.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCCC-CCCeEEEEcC-CchHHHhcc----cccc-CCCCCCCCceEEEEeeCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHR-DSPVVPVLVF-FFSKVGQTS----IGLG-VEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s-~SPIiPV~~g-~~~~~~~~a----~~i~-~PtVP~g~~RlRI~lsA~H  117 (153)
                      .++.+++.+++..++.+.|++. |+.+.+.. ...++.+-++ +.....+..    ..+. .|..--+...+||+++..+
T Consensus       342 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~  421 (438)
T 1wyu_A          342 LREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPKDPEAVRRALAERGFHGATPVPREYGENLALFAATELH  421 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSSCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCCCCHHHHHHHHHHCCceeccccccccCCCeEEEEecccC
Confidence            3567888999999999999998 88774321 1223334333 222222222    2221 2332122679999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy5049         118 SANLWNRPHSPSLMAV  133 (153)
Q Consensus       118 T~edId~L~~~~L~~~  133 (153)
                      |++|++++++ +|+.+
T Consensus       422 t~edi~~~~~-~l~~~  436 (438)
T 1wyu_A          422 EEEDLLALRE-ALKEV  436 (438)
T ss_dssp             CHHHHHHHHH-HHHHH
T ss_pred             CHHHHHHHHH-HHHHH
Confidence            9999999988 77654

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=96.78  E-value=0.0052  Score=49.87  Aligned_cols=89  Identities=15%  Similarity=0.075  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCC---CCCeEEEEcCC---chHHHhcc-----ccccCCCCCCCCceEEEEe-e
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHR---DSPVVPVLVFF---FSKVGQTS-----IGLGVEQTALNDGLSLYES-S  114 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s---~SPIiPV~~g~---~~~~~~~a-----~~i~~PtVP~g~~RlRI~l-s  114 (153)
                      ++.+++++++..++.+.|.+.|+.+....   ...++.+.+.+   .....+..     +.+++-..+.+...+||++ .
T Consensus       289 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~  368 (411)
T 3nnk_A          289 DYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMG  368 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCcc
Confidence            57889999999999999999988764322   14577777642   22222221     2333222234567899998 6


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhc
Q psy5049         115 HLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~~  136 (153)
                      ..+|++|++++++ +|+.+.+.
T Consensus       369 ~~~~~~~i~~~~~-~l~~~l~~  389 (411)
T 3nnk_A          369 YNARKDCVMTTLS-ALEAVLNY  389 (411)
T ss_dssp             GGCSHHHHHHHHH-HHHHHHHH
T ss_pred             CcCCHHHHHHHHH-HHHHHHHH
Confidence            6779999999999 88776654

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=96.74  E-value=0.0064  Score=49.00  Aligned_cols=88  Identities=14%  Similarity=0.030  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCC-CCCeEEEEcCC--chHHHhcc---ccccCCCC--------CCC-CceEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHR-DSPVVPVLVFF--FSKVGQTS---IGLGVEQT--------ALN-DGLSL  110 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s-~SPIiPV~~g~--~~~~~~~a---~~i~~PtV--------P~g-~~RlR  110 (153)
                      ++.+++++++..++.+.|.+. |+.+.... .++++.+.+.+  .....+..   .....|..        +.| ...+|
T Consensus       300 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iR  379 (406)
T 1kmj_A          300 NNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCR  379 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEE
Confidence            467888999999999999987 77654321 57888877642  22233222   11111211        112 47899


Q ss_pred             EEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         111 YESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       111 I~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      |+++..+|++|++++++ +++.+.+
T Consensus       380 is~~~~~t~~~i~~~~~-~l~~~~~  403 (406)
T 1kmj_A          380 ASLAMYNTHEEVDRLVT-GLQRIHR  403 (406)
T ss_dssp             EECCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             EEeecCCCHHHHHHHHH-HHHHHHH
Confidence            99999999999999999 8876654

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=96.72  E-value=0.0084  Score=48.65  Aligned_cols=89  Identities=8%  Similarity=-0.009  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCC-CCCCeEEEEcCC----chHHHhcc----ccccC---C---CCCCCCceEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGH-RDSPVVPVLVFF----FSKVGQTS----IGLGV---E---QTALNDGLSLY  111 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~-s~SPIiPV~~g~----~~~~~~~a----~~i~~---P---tVP~g~~RlRI  111 (153)
                      ++.+++++++..++.+.|.+.|+.+... +.++++.+.+.+    .....+..    +.+++   |   .-+.+...+||
T Consensus       279 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRi  358 (405)
T 2vi8_A          279 KAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRI  358 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEE
Confidence            6789999999999999999988876432 357888888753    22232222    11111   1   11223456999


Q ss_pred             EeeC----CCCHHHHHHHHHHHHHHHHhc
Q psy5049         112 ESSH----LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       112 ~lsA----~HT~edId~L~~~~L~~~~~~  136 (153)
                      +++.    .+|++|++++++ +|+.+.+.
T Consensus       359 s~~~~~~~~~~~~~i~~~~~-~l~~~~~~  386 (405)
T 2vi8_A          359 GTAAVTTRGFGLEEMDEIAA-IIGLVLKN  386 (405)
T ss_dssp             ECHHHHHTTCCHHHHHHHHH-HHHHHHTC
T ss_pred             eeeeeeecCCCHHHHHHHHH-HHHHHHhc
Confidence            9997    799999999999 88776544

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=96.71  E-value=0.0071  Score=48.98  Aligned_cols=90  Identities=8%  Similarity=-0.105  Sum_probs=58.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCC------CCCCeEEEEcCC------chHHHhcc----ccc---cCC------
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGH------RDSPVVPVLVFF------FSKVGQTS----IGL---GVE------  100 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~------s~SPIiPV~~g~------~~~~~~~a----~~i---~~P------  100 (153)
                      .++..++.+++..++++.|.+.++.+.+.      +..++++|.+.+      .....+..    +.+   .+|      
T Consensus       259 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~  338 (393)
T 1mdo_A          259 LDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKY  338 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChh
Confidence            35667778889999999999988654211      234578887752      22232222    222   122      


Q ss_pred             --------CCCC----CCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         101 --------QTAL----NDGLSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       101 --------tVP~----g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                              .+|.    +...+|++++..+|++|++++++ +|+.+.+.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~-~l~~~~~~  385 (393)
T 1mdo_A          339 YRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVIT-ALHQIAGQ  385 (393)
T ss_dssp             HHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHH-HHHHHHC-
T ss_pred             hhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHH-HHHHHHhc
Confidence                    2222    23479999999999999999999 88776554

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=96.67  E-value=0.01  Score=48.38  Aligned_cols=87  Identities=10%  Similarity=-0.117  Sum_probs=61.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC----CCcccCCC----CCCeEEEEcCCchHHHhcc--ccccCCCCCCCCceEEEEeeC-
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL----GLIVYGHR----DSPVVPVLVFFFSKVGQTS--IGLGVEQTALNDGLSLYESSH-  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s----~SPIiPV~~g~~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA-  115 (153)
                      ++.+++++++..++.+.|.+.    |+.+....    .++++.+.+.+.....+..  ..|...  +.+...+||+++. 
T Consensus       304 ~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~--~~~~~~lRis~~~~  381 (416)
T 1qz9_A          304 ASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGD--YREPRIMRFGFTPL  381 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECE--EETTTEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCCHHHHHHHHHhCCcEec--cCCCCeEEEeCccc
Confidence            568899999999999999986    88664332    3678888776543333322  222110  2246789999985 


Q ss_pred             CCCHHHHHHHHHHHHHHHHhc
Q psy5049         116 LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~~  136 (153)
                      .+|++|++++++ +|+.+.+.
T Consensus       382 ~~t~~~i~~~~~-~l~~~~~~  401 (416)
T 1qz9_A          382 YTTFTEVWDAVQ-ILGEILDR  401 (416)
T ss_dssp             TCCHHHHHHHHH-HHHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHhc
Confidence            899999999999 88766544

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=96.66  E-value=0.013  Score=47.72  Aligned_cols=88  Identities=14%  Similarity=0.020  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccC-CCCCCeEEEEcCC----chHHHhcc----cccc---CCC---CCCCCceEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYG-HRDSPVVPVLVFF----FSKVGQTS----IGLG---VEQ---TALNDGLSLY  111 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~-~s~SPIiPV~~g~----~~~~~~~a----~~i~---~Pt---VP~g~~RlRI  111 (153)
                      ++.++++.++..++++.|.+.|+.+.. .+.++++.+.+.+    ...+.+..    ..++   +|.   -|.+..++|+
T Consensus       289 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi  368 (425)
T 3ecd_A          289 KTYIDRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRL  368 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceec
Confidence            578899999999999999999987642 2467888888753    12222222    2222   233   2344578999


Q ss_pred             E----eeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         112 E----SSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       112 ~----lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +    .+..++++|++++++ +++.+.+
T Consensus       369 ~~~~~~~~~~~~e~i~~~~~-~l~~~l~  395 (425)
T 3ecd_A          369 GTPAGTTRGFGAAEFREVGR-LILEVFE  395 (425)
T ss_dssp             ESHHHHHTTCCHHHHHHHHH-HHHHHHH
T ss_pred             cchhheeccCCHHHHHHHHH-HHHHHHh
Confidence            9    788889999999998 7765544

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=96.65  E-value=0.0077  Score=48.90  Aligned_cols=86  Identities=6%  Similarity=-0.118  Sum_probs=56.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCc----hHHHhcc--------ccccCCCCCCCCceEEEE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFF----SKVGQTS--------IGLGVEQTALNDGLSLYE  112 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~----~~~~~~a--------~~i~~PtVP~g~~RlRI~  112 (153)
                      .++.+++++++..++++.|.+. |+.+.....+..+.+-+...    ....+..        .+..++. |.+...+||+
T Consensus       305 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-~~~~~~iRis  383 (407)
T 3nra_A          305 MEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFS-PHTADSVRLN  383 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTC-TTCTTBEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhC-CCCCCEEEEE
Confidence            3678889999999999999987 77653333345555555431    1222111        1122233 5678999999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      ++.  |++||+++++ .|..+.+
T Consensus       384 ~~~--~~~~i~~~~~-~l~~~~~  403 (407)
T 3nra_A          384 FSQ--DHEAAVAAAR-RIVTLVE  403 (407)
T ss_dssp             CCS--CHHHHHHHHH-HHHHHHH
T ss_pred             eCC--CHHHHHHHHH-HHHHHHH
Confidence            985  9999999988 7765543

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=96.60  E-value=0.014  Score=46.17  Aligned_cols=85  Identities=13%  Similarity=-0.085  Sum_probs=58.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHH
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANL  121 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~ed  121 (153)
                      ..+.++++.++..++.+.|++.|+.+. .+.+.++.+...+...+.+..    +.+++-........+||+++   +++|
T Consensus       247 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~  322 (337)
T 3p1t_A          247 REAHIAKTLAQRRRVADALRGLGYRVA-SSEANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REED  322 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBC-CCSSSEEEEECTTTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCcCEEC-CCCCeEEEEEcCCHHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHH
Confidence            356778888999999999999998764 456777777666655444433    22211111111468999987   7999


Q ss_pred             HHHHHHHHHHHHHh
Q psy5049         122 WNRPHSPSLMAVFR  135 (153)
Q Consensus       122 Id~L~~~~L~~~~~  135 (153)
                      ++++++ +++.+.+
T Consensus       323 ~~~l~~-al~~~~~  335 (337)
T 3p1t_A          323 NDRLLA-ALAEYSD  335 (337)
T ss_dssp             HHHHHH-HHHHHTC
T ss_pred             HHHHHH-HHHHHhh
Confidence            999998 8877653

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=96.60  E-value=0.0096  Score=47.86  Aligned_cols=90  Identities=8%  Similarity=-0.042  Sum_probs=57.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC--CcccCCCC-----CCeEEEEcCCchHHHhcc----c--cccCC-CCC--------
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG--LIVYGHRD-----SPVVPVLVFFFSKVGQTS----I--GLGVE-QTA--------  103 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G--~~~~~~s~-----SPIiPV~~g~~~~~~~~a----~--~i~~P-tVP--------  103 (153)
                      .++..++.+++..++++.|.+.+  +.+....+     ...+++...+.....+..    +  ...+| .+.        
T Consensus       247 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~  326 (374)
T 3uwc_A          247 LETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSL  326 (374)
T ss_dssp             HHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCccccCCCCccccChhhhhc
Confidence            36678888999999999999876  43321111     134555555544444432    1  11221 111        


Q ss_pred             ------------CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         104 ------------LNDGLSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       104 ------------~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                                  .....+|++++..+|+|||+++++ +++.+.+.
T Consensus       327 ~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~-~l~~~l~~  370 (374)
T 3uwc_A          327 GYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIK-KVREFYLE  370 (374)
T ss_dssp             CCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHH-HHHHHHHT
T ss_pred             CCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHH-HHHHHHHh
Confidence                        112789999999999999999999 88776654

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=96.60  E-value=0.01  Score=48.19  Aligned_cols=89  Identities=16%  Similarity=0.033  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCC-----CCCeEEEEcCC--chHHHhcc---ccccCCC----CC----CC-C
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHR-----DSPVVPVLVFF--FSKVGQTS---IGLGVEQ----TA----LN-D  106 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s-----~SPIiPV~~g~--~~~~~~~a---~~i~~Pt----VP----~g-~  106 (153)
                      ++++++++++..++.+.|.+. |+.+....     .++++.+.+.+  .....+..   .....|.    +|    .| .
T Consensus       304 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~  383 (420)
T 1t3i_A          304 ENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDAS  383 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchHHHHhcCCC
Confidence            677889999999999999987 77654332     27788877653  22233322   1111221    11    23 5


Q ss_pred             ceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         107 GLSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       107 ~RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                      ..+||+++..+|++|++++++ +|+.+.+.
T Consensus       384 ~~iRis~~~~~~~~~i~~~~~-~l~~~~~~  412 (420)
T 1t3i_A          384 GSARASLYFYNTKEEIDLFLQ-SLQATIRF  412 (420)
T ss_dssp             CCEEEECCTTCCHHHHHHHHH-HHHHHHHH
T ss_pred             CeEEEecCCCCCHHHHHHHHH-HHHHHHHH
Confidence            789999999999999999999 88766543

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=96.57  E-value=0.009  Score=50.68  Aligned_cols=90  Identities=6%  Similarity=-0.200  Sum_probs=61.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCc----hHHHhcc----ccccCCCCCCCCceEEEEeeC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFF----SKVGQTS----IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~----~~~~~~a----~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      ...++.++..++..+|.+.|.+. |+.+...+..+++.+.+.+.    ....+..    ..+..|++-.+...+|+++..
T Consensus       373 g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~  452 (486)
T 1js3_A          373 GLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICS  452 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCC
Confidence            34667888899999999999986 77765445577888776532    1222211    333445544567899999754


Q ss_pred             -CCCHHHHHHHHHHHHHHHHh
Q psy5049         116 -LRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       116 -~HT~edId~L~~~~L~~~~~  135 (153)
                       ..|++||+++++ .|+.+.+
T Consensus       453 ~~~t~~di~~~~~-~l~~~~~  472 (486)
T 1js3_A          453 RKVESGHVRLAWE-HIRGLAA  472 (486)
T ss_dssp             TTCCHHHHHHHHH-HHHHHHH
T ss_pred             CCCCHHHHHHHHH-HHHHHHH
Confidence             578999999998 7765543

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=96.57  E-value=0.015  Score=46.36  Aligned_cols=86  Identities=6%  Similarity=-0.153  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCC-C-ccc--CCCCCC-eEEEEcCCchHHHhcc------ccccCCCCCCCCceEEEEeeC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLG-L-IVY--GHRDSP-VVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G-~-~~~--~~s~SP-IiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      ++++++++++..++.+.|.+.+ + ...  ....++ ++.+.+.+.....++.      .....|..+ ....+|++++.
T Consensus       261 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~-~~~~iRis~~~  339 (360)
T 1w23_A          261 EAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHR-SVGGCRASIYN  339 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCT-TTCSEEEECCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCCccHHHHHHHHHHCCeeeecCCC-CCCeEEEEecC
Confidence            5678999999999999999876 4 321  111345 8888776532222222      111233322 24679999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~  134 (153)
                      .+|++|++++++ +++.+.
T Consensus       340 ~~~~~~i~~~~~-~l~~~~  357 (360)
T 1w23_A          340 AVPIDACIALRE-LMIQFK  357 (360)
T ss_dssp             TSCHHHHHHHHH-HHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHH
Confidence            999999999998 887654

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=96.56  E-value=0.019  Score=46.08  Aligned_cols=82  Identities=6%  Similarity=-0.156  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHh-CCCcccCCCCCCeEEEEcCC-chHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNR-LGLIVYGHRDSPVVPVLVFF-FSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSAN  120 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~-~G~~~~~~s~SPIiPV~~g~-~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~e  120 (153)
                      .+.+++++++..++.+.|.+ .|+.+. .+.+.++.+-+.. .....+..    ..+++-..+.....+||+++   |++
T Consensus       275 ~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~  350 (363)
T 3ffh_A          275 GECRTSNANGIKQYEAFAKRFEKVKLY-PANGNFVLIDLGIEAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEE  350 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCEEC-CCCSSEEEEECSSCHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCceEC-CCCCeEEEEECCCCHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHH
Confidence            67788899999999999998 888764 4567777777763 33333322    22222221222579999987   999


Q ss_pred             HHHHHHHHHHHHH
Q psy5049         121 LWNRPHSPSLMAV  133 (153)
Q Consensus       121 dId~L~~~~L~~~  133 (153)
                      |++++++ +|+.+
T Consensus       351 ~i~~~~~-~l~~~  362 (363)
T 3ffh_A          351 DNSAVIA-LLEKL  362 (363)
T ss_dssp             HHHHHHH-HHHHH
T ss_pred             HHHHHHH-HHHHh
Confidence            9999998 77653

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=96.55  E-value=0.014  Score=47.17  Aligned_cols=90  Identities=10%  Similarity=0.016  Sum_probs=59.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCC---CC-eEEEEcC---CchHHHhcc-----ccccCCCCCCCCceEEEEe
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRD---SP-VVPVLVF---FFSKVGQTS-----IGLGVEQTALNDGLSLYES  113 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~---SP-IiPV~~g---~~~~~~~~a-----~~i~~PtVP~g~~RlRI~l  113 (153)
                      .++.+++++++..++.+.|.+.|+.+.....   +| ++.+.+.   +.....+..     +.++.-..+.+...+||++
T Consensus       280 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~  359 (396)
T 2ch1_A          280 LENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGI  359 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEEC
Confidence            3567889999999999999988887643221   23 7777664   222222211     2223212233567899999


Q ss_pred             e-CCCCHHHHHHHHHHHHHHHHhc
Q psy5049         114 S-HLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       114 s-A~HT~edId~L~~~~L~~~~~~  136 (153)
                      + ..+|+||++++++ +|+.+.+.
T Consensus       360 ~~~~~~~e~i~~~~~-~l~~~l~~  382 (396)
T 2ch1_A          360 MGECSTVQKIQFYLY-GFKESLKA  382 (396)
T ss_dssp             CGGGCSHHHHHHHHH-HHHHHHHH
T ss_pred             CCCcCCHHHHHHHHH-HHHHHHHH
Confidence            5 5779999999999 88776554

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=96.55  E-value=0.0069  Score=48.67  Aligned_cols=83  Identities=12%  Similarity=0.031  Sum_probs=57.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccC--CCCCCeEEEEcCC---chHHHhcc---ccccCCCCCCCCceEEEEeeCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYG--HRDSPVVPVLVFF---FSKVGQTS---IGLGVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~s~SPIiPV~~g~---~~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~  116 (153)
                      .++.+++++++..++.+.|.+. |+.+..  .+.++++.+-+..   .....+..   .....|..  +...+||+++..
T Consensus       295 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~--~~~~iRis~~~~  372 (390)
T 1elu_A          295 AEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIA--DPDCIRACCHYI  372 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEET--TTTEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecC--CCCeEEEecccC
Confidence            4668899999999999999987 776543  2457788887642   22222222   11222221  357899999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy5049         117 RSANLWNRPHSPSLM  131 (153)
Q Consensus       117 HT~edId~L~~~~L~  131 (153)
                      +|++|++++++ +|+
T Consensus       373 ~~~~~i~~~~~-~l~  386 (390)
T 1elu_A          373 TDEEEINHLLA-RLA  386 (390)
T ss_dssp             CCHHHHHHHHH-HHT
T ss_pred             CCHHHHHHHHH-HHH
Confidence            99999999887 554

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=96.46  E-value=0.0052  Score=49.16  Aligned_cols=87  Identities=13%  Similarity=0.174  Sum_probs=58.7

Q ss_pred             HHHHHH--HHHHHHHHHHHHhCCCcccCCC--CCCeEEEEcCCchHHHhcc----ccccC--CCC---CCCCceEE-EEe
Q psy5049          48 RRISVL--AHNTRYFRRKLNRLGLIVYGHR--DSPVVPVLVFFFSKVGQTS----IGLGV--EQT---ALNDGLSL-YES  113 (153)
Q Consensus        48 ~rr~~L--~~ni~~fr~~L~~~G~~~~~~s--~SPIiPV~~g~~~~~~~~a----~~i~~--PtV---P~g~~RlR-I~l  113 (153)
                      +.++++  +++..++.+.|.+.|+.+....  .++++.+.+++.....+..    ..+.+  +.+   ......+| +++
T Consensus       267 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~  346 (371)
T 2e7j_A          267 RIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKL  346 (371)
T ss_dssp             HGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcEEecCCCccCceEEEECCCHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEe
Confidence            567788  8999999999998888764332  4778877775222232222    22221  111   11257899 999


Q ss_pred             eCC-CCHHHHHHHHHHHHHHHHh
Q psy5049         114 SHL-RSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       114 sA~-HT~edId~L~~~~L~~~~~  135 (153)
                      +.. +|++|++++++ +|+.+.+
T Consensus       347 ~~~~~~~~~i~~~~~-~l~~~~~  368 (371)
T 2e7j_A          347 STYGLSDEEVDYVLN-AFKEIIE  368 (371)
T ss_dssp             ECTTCCHHHHHHHHH-HHHHHHH
T ss_pred             eccCCCHHHHHHHHH-HHHHHHH
Confidence            998 99999999999 8876654

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=96.45  E-value=0.017  Score=46.34  Aligned_cols=84  Identities=0%  Similarity=-0.095  Sum_probs=57.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC--chHHHhcc---ccccCCCCCCCCceEEEEeeCCCCHH
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF--FSKVGQTS---IGLGVEQTALNDGLSLYESSHLRSAN  120 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~--~~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~HT~e  120 (153)
                      ..+.+++++++..++.+.|.+.|+.+. .+.+..+.+-+.+  .....+..   .....|.-.-+...+||+++   |++
T Consensus       276 ~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~  351 (365)
T 3get_A          276 TEKTLENNFSQMELYKEFAKKHNIKII-DSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSY  351 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEC-CCSSSEEEEECSSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEC-CCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHH
Confidence            367888999999999999999998764 4566777776654  23333222   11122221112688999987   899


Q ss_pred             HHHHHHHHHHHHHH
Q psy5049         121 LWNRPHSPSLMAVF  134 (153)
Q Consensus       121 dId~L~~~~L~~~~  134 (153)
                      |++++++ +|+.+.
T Consensus       352 ~i~~l~~-~l~~~l  364 (365)
T 3get_A          352 ENEKFFT-EFDKIL  364 (365)
T ss_dssp             HHHHHHH-HHHHHH
T ss_pred             HHHHHHH-HHHHHh
Confidence            9999998 777653

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=96.44  E-value=0.016  Score=48.10  Aligned_cols=84  Identities=12%  Similarity=0.105  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCccc---C--------------CCCCCeEEEEcCCchHHHhcc------ccc-----
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVY---G--------------HRDSPVVPVLVFFFSKVGQTS------IGL-----   97 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~---~--------------~s~SPIiPV~~g~~~~~~~~a------~~i-----   97 (153)
                      .++.++.+++..+|.+.|.+. |+...   +              .+..+|+++.+++.+.+..+.      .+.     
T Consensus       280 ~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~~~~~~~~~~l~~~~i~~~~s~g~~  359 (412)
T 2cb1_A          280 ALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLGDLERASRFLGAIRLLKAANLGDA  359 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEECSSHHHHHHHHHHCSSEECSCCSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHHHhCCeeeecccCCC
Confidence            566777889999999999875 55421   1              124679999996444444433      111     


Q ss_pred             ----cCCCC------CC------C--CceEEEEeeCCCCHHHHHHHHHHHHH
Q psy5049          98 ----GVEQT------AL------N--DGLSLYESSHLRSANLWNRPHSPSLM  131 (153)
Q Consensus        98 ----~~PtV------P~------g--~~RlRI~lsA~HT~edId~L~~~~L~  131 (153)
                          .+|+.      |.      |  .+.+|++++..+|+++|+.+.+ +|+
T Consensus       360 ~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~-al~  410 (412)
T 2cb1_A          360 RTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEE-ALE  410 (412)
T ss_dssp             SCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHH-HHH
T ss_pred             cceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHH-HHh
Confidence                35532      21      1  6899999999999999999988 665

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=96.44  E-value=0.011  Score=47.97  Aligned_cols=84  Identities=18%  Similarity=0.084  Sum_probs=56.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCC--CCCCeEEEEcCC--chHHHhcc----ccccC---C------CCCCCCce
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGH--RDSPVVPVLVFF--FSKVGQTS----IGLGV---E------QTALNDGL  108 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~--s~SPIiPV~~g~--~~~~~~~a----~~i~~---P------tVP~g~~R  108 (153)
                      ++.+++++++..++.+.|.+. |+.+.+.  ..++++.+.+.+  .....+..    +.++.   +      ..+.+...
T Consensus       302 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~  381 (406)
T 3cai_A          302 QSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGA  381 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCCCe
Confidence            567888999999999999986 6655332  136788777653  22232222    22211   0      12234578


Q ss_pred             EEEEeeCCCCHHHHHHHHHHHHH
Q psy5049         109 SLYESSHLRSANLWNRPHSPSLM  131 (153)
Q Consensus       109 lRI~lsA~HT~edId~L~~~~L~  131 (153)
                      +||+++..+|+||++++++ +|+
T Consensus       382 iRis~~~~~t~e~i~~~~~-~l~  403 (406)
T 3cai_A          382 VTVGLAHYSTMAEVDQLVR-ALA  403 (406)
T ss_dssp             EEEECCTTCCHHHHHHHHH-HHH
T ss_pred             EEEEeecCCCHHHHHHHHH-HHH
Confidence            9999999999999999888 665

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=96.41  E-value=0.0084  Score=50.57  Aligned_cols=84  Identities=8%  Similarity=-0.069  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccC--CCCCCeEEEEcCCc-----hHHHhcc---ccccCCCCCCCCceEEEEeeCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYG--HRDSPVVPVLVFFF-----SKVGQTS---IGLGVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~--~s~SPIiPV~~g~~-----~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~  116 (153)
                      ++.+++++++..+|++.|.+.++.+.+  .+...++.|.+.++     .......   ..+..|   .+...+|++++..
T Consensus       343 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~---~~~~~iRi~~~~~  419 (439)
T 2oat_A          343 ENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKP---THGDIIRFAPPLV  419 (439)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTSCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCB---SSSSEEEECCCTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEec---CCCCEEEEECccC
Confidence            468899999999999999988764311  24467888887653     1222222   222233   3568999999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q psy5049         117 RSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       117 HT~edId~L~~~~L~~~~  134 (153)
                      +|+||++++++ +++.+.
T Consensus       420 ~t~e~i~~~l~-~l~~~l  436 (439)
T 2oat_A          420 IKEDELRESIE-IINKTI  436 (439)
T ss_dssp             CCHHHHHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHH-HHHHHH
Confidence            99999999998 776654

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=96.40  E-value=0.016  Score=46.31  Aligned_cols=87  Identities=13%  Similarity=0.061  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCC---CCeEEEEcCC--chHHHhcc----ccccCCCC--------------
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRD---SPVVPVLVFF--FSKVGQTS----IGLGVEQT--------------  102 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~---SPIiPV~~g~--~~~~~~~a----~~i~~PtV--------------  102 (153)
                      ++++++++++..++.+.|.+. |+.+.+...   ..++.+.+.+  .....+..    +.++ |..              
T Consensus       255 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~-~g~~~~~~~~~~~~~~~  333 (382)
T 4eb5_A          255 REEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQAS-TGSACSSKTLQPSHVLM  333 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCB-CCCGGGTSSCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEe-ccccccCCCCcccHHHH
Confidence            567888899999999999886 665533211   4477776642  22222222    2221 111              


Q ss_pred             ----C--CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         103 ----A--LNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       103 ----P--~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                          +  .+...+||+++..+|+||++++++ +|+.+.+
T Consensus       334 ~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~-~l~~~~~  371 (382)
T 4eb5_A          334 ACGLKHEEAHGTLLLTLGRYNTDEDVDRLLE-VLPGVIE  371 (382)
T ss_dssp             HTTCCHHHHTTEEEEECCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             HcCCChhccCCeEEEECCCCCCHHHHHHHHH-HHHHHHH
Confidence                0  135789999999999999999998 7766543

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=96.36  E-value=0.021  Score=48.33  Aligned_cols=88  Identities=7%  Similarity=-0.153  Sum_probs=58.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcc-cCC--CCCC-eEEEEcCCc---hHHHhcc----ccccCCCCCCCCceEEEEee
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIV-YGH--RDSP-VVPVLVFFF---SKVGQTS----IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~-~~~--s~SP-IiPV~~g~~---~~~~~~a----~~i~~PtVP~g~~RlRI~ls  114 (153)
                      .+++.++.++...++++.|.+.|+.. ...  ..+| |+++.+.+.   .......    +.++ +. ....+.+|+++.
T Consensus       286 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~L~~~gI~~~-~g-~~~~~~iRiS~~  363 (386)
T 3qm2_A          286 VAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADNTLDKVFLEESFAAGLHAL-KG-HRVVGGMRASIY  363 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECC-BC-CTTTCSEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCccccHHHHHHHHHCCCEEe-CC-CCCcCeEEEEcC
Confidence            46678889999999999999988621 111  2355 888888642   1221111    2222 21 111234999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhc
Q psy5049         115 HLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~~  136 (153)
                      ..+|+||||++++ +|+++.+.
T Consensus       364 ~~~t~edId~l~~-~l~~~~~~  384 (386)
T 3qm2_A          364 NAMPIEGVKALTD-FMIDFERR  384 (386)
T ss_dssp             TTSCHHHHHHHHH-HHHHHHHH
T ss_pred             CCCCHHHHHHHHH-HHHHHHHh
Confidence            9999999999999 88877654

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=96.35  E-value=0.0088  Score=48.66  Aligned_cols=89  Identities=8%  Similarity=-0.039  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccC-CCCCCeEEEEcCCc----hHHHhcc----ccccC---C---CCCCCCceEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYG-HRDSPVVPVLVFFF----SKVGQTS----IGLGV---E---QTALNDGLSLY  111 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~-~s~SPIiPV~~g~~----~~~~~~a----~~i~~---P---tVP~g~~RlRI  111 (153)
                      .++++++.++..++++.|.+.|+.+.. .+.++++.+.+.+.    ..+.+..    +.+.+   |   ..|.+...+||
T Consensus       288 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi  367 (420)
T 3gbx_A          288 KVYQQQVAKNAKAMVEVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRI  367 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEE
Confidence            677999999999999999999987642 24678888887532    2222222    22222   2   22344456999


Q ss_pred             EeeCC----CCHHHHHHHHHHHHHHHHhc
Q psy5049         112 ESSHL----RSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       112 ~lsA~----HT~edId~L~~~~L~~~~~~  136 (153)
                      +++..    .+++|++++++ +++.+.+.
T Consensus       368 ~~~~~~~~~~~~~~i~~~~~-~l~~~l~~  395 (420)
T 3gbx_A          368 GSPAVTRRGFKEAEVKELAG-WMCDVLDN  395 (420)
T ss_dssp             ECHHHHHTTCCHHHHHHHHH-HHHHHHHT
T ss_pred             ecchhcccCCCHHHHHHHHH-HHHHHHhC
Confidence            98765    56999999999 88766544

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=96.34  E-value=0.013  Score=47.46  Aligned_cols=89  Identities=8%  Similarity=-0.040  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccC-CCCCCeEEEEcCC----chHHHhcc----cccc---CC---CCCCCCceEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYG-HRDSPVVPVLVFF----FSKVGQTS----IGLG---VE---QTALNDGLSLY  111 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~-~s~SPIiPV~~g~----~~~~~~~a----~~i~---~P---tVP~g~~RlRI  111 (153)
                      ++.+++++++..++.+.|++.|+.+.+ .+.++++.+-+.+    .....+..    +.++   .|   .-+.....+|+
T Consensus       280 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi  359 (407)
T 2dkj_A          280 KEYSRLVVENAKRLAEELARRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRI  359 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceee
Confidence            778999999999999999998887643 2467888887753    22222222    1111   11   01223457999


Q ss_pred             EeeC----CCCHHHHHHHHHHHHHHHHhc
Q psy5049         112 ESSH----LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       112 ~lsA----~HT~edId~L~~~~L~~~~~~  136 (153)
                      +++.    .+|++|++++++ +|+.+.+.
T Consensus       360 s~~~~~~~~~~~~~i~~~~~-~l~~~~~~  387 (407)
T 2dkj_A          360 GTPAITTRGFTPEEMPLVAE-LIDRALLE  387 (407)
T ss_dssp             ECHHHHHTTCCGGGHHHHHH-HHHHHHHH
T ss_pred             ecccccccCCCHHHHHHHHH-HHHHHHhc
Confidence            9986    599999999999 78766544

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=96.33  E-value=0.02  Score=45.67  Aligned_cols=88  Identities=8%  Similarity=-0.041  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCC---CCCeEEEEcCC--chHHHhcc----ccccC-----C------------
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHR---DSPVVPVLVFF--FSKVGQTS----IGLGV-----E------------  100 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s---~SPIiPV~~g~--~~~~~~~a----~~i~~-----P------------  100 (153)
                      ++.+++++++..++.+.|.+.|+.+....   ...++.+.+.+  .....+..    +.+++     +            
T Consensus       259 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~  338 (384)
T 1eg5_A          259 SEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAM  338 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC------------CHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHc
Confidence            57788899999999999998887653321   13466666642  22222222    22211     1            


Q ss_pred             CCC--CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         101 QTA--LNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       101 tVP--~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      .+|  .+...+||+++..+|+||++++++ +|+.+.+
T Consensus       339 g~~~~~~~~~iRi~~~~~~~~~~i~~~~~-~l~~~~~  374 (384)
T 1eg5_A          339 GVDRRIAQGAIRISLCKYNTEEEVDYFLK-KIEEILS  374 (384)
T ss_dssp             TCCHHHHHHEEEEECCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             CCChhhcCCeEEEECCCCCCHHHHHHHHH-HHHHHHH
Confidence            111  124789999999999999999999 7776654

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=96.33  E-value=0.022  Score=47.71  Aligned_cols=88  Identities=6%  Similarity=-0.150  Sum_probs=59.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC-C-cccCC--CCCC-eEEEEcCC--c--hHHHhcc--ccc-cCCCCCCCCceEEEEe
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG-L-IVYGH--RDSP-VVPVLVFF--F--SKVGQTS--IGL-GVEQTALNDGLSLYES  113 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G-~-~~~~~--s~SP-IiPV~~g~--~--~~~~~~a--~~i-~~PtVP~g~~RlRI~l  113 (153)
                      .+.+.++.++...++++.|.+.| + .....  ..+| |+++.+.+  .  .......  ..| ..+. ....+.+|+++
T Consensus       259 ~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~L~~~gI~~~~g-~~~~g~iRiS~  337 (361)
T 3m5u_A          259 LDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKG-HRILGGIRASI  337 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSCTTHHHHHHHHHHHTTEECCBC-CTTTCSEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCchhhhHHHHHHHHHCCCEEecC-CCccCeEEEEc
Confidence            47788899999999999999987 4 33222  2245 88888875  1  1222222  111 1222 11124599999


Q ss_pred             eCCCCHHHHHHHHHHHHHHHHh
Q psy5049         114 SHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~~  135 (153)
                      .-.+|+||||++++ +|+.+.+
T Consensus       338 ~~~~t~edId~l~~-al~~~~~  358 (361)
T 3m5u_A          338 YNALNLDQVKTLCE-FMKEFQG  358 (361)
T ss_dssp             CTTSCHHHHHHHHH-HHHHHHH
T ss_pred             cCCCCHHHHHHHHH-HHHHHHH
Confidence            99999999999999 8887764

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=96.30  E-value=0.0073  Score=50.77  Aligned_cols=86  Identities=8%  Similarity=-0.118  Sum_probs=60.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHh-----------CCCcccCCCC----CCeEEEEcCC-chHHHhcc----ccccCCCCCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNR-----------LGLIVYGHRD----SPVVPVLVFF-FSKVGQTS----IGLGVEQTALN  105 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~-----------~G~~~~~~s~----SPIiPV~~g~-~~~~~~~a----~~i~~PtVP~g  105 (153)
                      .++.++++.++..++.+.|.+           .|+.+....+    .+++.+.+.. .....+..    +.++    ..+
T Consensus       354 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~~~~l~~~L~~~Gi~v~----~~~  429 (465)
T 3e9k_A          354 MKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPNKDVFQELEKRGVVCD----KRN  429 (465)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCTTCCHHHHHHTTTEECE----EET
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCCHHHHHHHHHHCCEEEe----cCC
Confidence            477899999999999999987           6776643221    6677776652 22333322    3333    223


Q ss_pred             CceEEEEe-eCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         106 DGLSLYES-SHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       106 ~~RlRI~l-sA~HT~edId~L~~~~L~~~~~~  136 (153)
                      ...+||++ +..+|++||+++++ +|+.+.+.
T Consensus       430 ~~~iRis~~~~~~t~edi~~~~~-~l~~~l~~  460 (465)
T 3e9k_A          430 PNGIRVAPVPLYNSFHDVYKFTN-LLTSILDS  460 (465)
T ss_dssp             TTEEEEBCCTTTCCHHHHHHHHH-HHHHHHTC
T ss_pred             CCEEEEeCcccCCCHHHHHHHHH-HHHHHHHh
Confidence            57999998 89999999999999 78766543

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=96.27  E-value=0.027  Score=45.92  Aligned_cols=86  Identities=8%  Similarity=-0.069  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC---CCcccCCCCCCeEEEEcCC---chHHHhcc----ccc----cCCCCCCCCceEEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL---GLIVYGHRDSPVVPVLVFF---FSKVGQTS----IGL----GVEQTALNDGLSLYE  112 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~---G~~~~~~s~SPIiPV~~g~---~~~~~~~a----~~i----~~PtVP~g~~RlRI~  112 (153)
                      .+.+++++++..++.+.|.+.   |+.+...+.+.++.+-+.+   .....+..    ..+    .|...+.+...+||+
T Consensus       291 ~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis  370 (397)
T 2zyj_A          291 ERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGLSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLS  370 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEE
Confidence            566788889999999999875   6765333445677666653   22222222    111    222223456889999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHH
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~  134 (153)
                      ++.. |++||+++++ .|+.+.
T Consensus       371 ~~~~-~~~~i~~~~~-~l~~~l  390 (397)
T 2zyj_A          371 YATL-DREGIAEGVR-RLGRAL  390 (397)
T ss_dssp             CSSS-CHHHHHHHHH-HHHHHH
T ss_pred             cCCC-CHHHHHHHHH-HHHHHH
Confidence            9885 9999999988 776544

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=96.27  E-value=0.034  Score=44.92  Aligned_cols=84  Identities=11%  Similarity=-0.002  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----ccc----cCCCCCCCCceEEEEeeCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----IGL----GVEQTALNDGLSLYESSHLRS  118 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i----~~PtVP~g~~RlRI~lsA~HT  118 (153)
                      ++.+++++++..++.+.|++.|+.+.....+.++.+-+.+.+ +....    ..+    .|..-+.+...+||+++.  |
T Consensus       277 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~  353 (381)
T 1v2d_A          277 EALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWD-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--T  353 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTTCC-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--C
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEecCCCcceEEEEecChHh-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--C
Confidence            567889999999999999998987654333456555554332 32222    111    122113456789999987  9


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy5049         119 ANLWNRPHSPSLMAVF  134 (153)
Q Consensus       119 ~edId~L~~~~L~~~~  134 (153)
                      ++||+++++ .++.+.
T Consensus       354 ~~~i~~~~~-~l~~~l  368 (381)
T 1v2d_A          354 EEELHLALE-RLGRVV  368 (381)
T ss_dssp             HHHHHHHHH-HHHHHC
T ss_pred             HHHHHHHHH-HHHHHH
Confidence            999999888 776553

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=96.27  E-value=0.029  Score=45.25  Aligned_cols=90  Identities=11%  Similarity=-0.010  Sum_probs=58.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCC-eEEEEcCC---chHHHhcc----ccccCCCC-CCCCceEEEEee
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHR--DSP-VVPVLVFF---FSKVGQTS----IGLGVEQT-ALNDGLSLYESS  114 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s--~SP-IiPV~~g~---~~~~~~~a----~~i~~PtV-P~g~~RlRI~ls  114 (153)
                      .++.++++.++..++.+.|.+.|+.+....  .++ ++.+.+.+   .....+..    .....|.. +.+...+||+++
T Consensus       281 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~  360 (393)
T 2huf_A          281 LPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLM  360 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcc
Confidence            356788999999999999998888764322  245 77777642   22222211    11122221 235678999996


Q ss_pred             CC-CCHHHHHHHHHHHHHHHHhc
Q psy5049         115 HL-RSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       115 A~-HT~edId~L~~~~L~~~~~~  136 (153)
                      .. .++||++++++ +|+.+.+.
T Consensus       361 ~~~~~~e~i~~~~~-~l~~~~~~  382 (393)
T 2huf_A          361 GQNATTERVDRVLQ-VFQEAVAA  382 (393)
T ss_dssp             GGGCSHHHHHHHHH-HHHHHHHH
T ss_pred             cCcCCHHHHHHHHH-HHHHHHHH
Confidence            64 57999999999 88766543

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=96.25  E-value=0.0085  Score=49.64  Aligned_cols=89  Identities=9%  Similarity=-0.055  Sum_probs=52.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC--Ccc--cCCCCCCeEEEEcCCc------------hHHHhcc-------ccccCCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG--LIV--YGHRDSPVVPVLVFFF------------SKVGQTS-------IGLGVEQT  102 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G--~~~--~~~s~SPIiPV~~g~~------------~~~~~~a-------~~i~~PtV  102 (153)
                      .++.+++++++..++++.|.+..  +..  ...+...++.+.+.+.            ....+.+       .+..++++
T Consensus       315 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~  394 (430)
T 3i4j_A          315 REDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEP  394 (430)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------CHHHHHHHHHHTTEECC-------
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccC
Confidence            46789999999999999998652  211  0123456777766431            1122211       22345677


Q ss_pred             CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         103 ALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       103 P~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +.+...+||+++..+|+||++++++ +|+.+.+
T Consensus       395 ~~~~~~iRi~~~~~~t~e~i~~~l~-~l~~~l~  426 (430)
T 3i4j_A          395 NGRGDHLLLGPPLSITAAEVDGLLA-LLAGALE  426 (430)
T ss_dssp             ----CEEEECCCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHH-HHHHHHH
Confidence            7778899999999999999999998 7765543

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=96.23  E-value=0.026  Score=44.67  Aligned_cols=82  Identities=12%  Similarity=0.101  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCchHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHHH
Q psy5049          48 RRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANLW  122 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~edI  122 (153)
                      +.++++.++..++++.|.+. |+.+...+.++++.+-+.  ....+..    ..+++...+  ...+|++++..+|++|+
T Consensus       264 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~--~~~~~~l~~~gi~v~~g~~~--~~~iRi~~~~~~~~~~i  339 (356)
T 1v72_A          264 RNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD--SAMIDALLKAGFGFYHDRWG--PNVVRFVTSFATTAEDV  339 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC--HHHHHHHHHTTCBCBCSSSS--TTEEEEECCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC--HHHHHHHHhcCeEEeccccC--CCeEEEEecCCCCHHHH
Confidence            46788899999999999884 776533455676665553  2222222    333322222  57899999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy5049         123 NRPHSPSLMAVF  134 (153)
Q Consensus       123 d~L~~~~L~~~~  134 (153)
                      +++++ +|+.+.
T Consensus       340 ~~~~~-~l~~~l  350 (356)
T 1v72_A          340 DHLLN-QVRLAA  350 (356)
T ss_dssp             HHHHH-HHHHTC
T ss_pred             HHHHH-HHHHHH
Confidence            99888 776543

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=96.22  E-value=0.0097  Score=51.19  Aligned_cols=85  Identities=8%  Similarity=-0.028  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEE-cCCchH----------------HHhcc-------ccccCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVL-VFFFSK----------------VGQTS-------IGLGVEQ  101 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~-~g~~~~----------------~~~~a-------~~i~~Pt  101 (153)
                      ++++++++++..++.+.|++. |+.+. .+++.++.+. +..+..                +..+.       .+...+.
T Consensus       383 ~~~~~~l~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~  461 (500)
T 3tcm_A          383 DGILASLARRAKALEHAFNKLEGITCN-EAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFG  461 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTEECC-CCCBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcEEe-cCCeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccC
Confidence            567788999999999999988 77663 3555554432 221211                11221       2334455


Q ss_pred             CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         102 TALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       102 VP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      ++.|+..+|++++  +++++|+++++ .|..+.+
T Consensus       462 ~~~g~~~iRis~~--~~~e~i~~~i~-~l~~~~~  492 (500)
T 3tcm_A          462 QVPGTWHFRCTIL--PQEDKIPAVIS-RFTVFHE  492 (500)
T ss_dssp             CCTTCCBEEEESC--SCTTTHHHHHH-HHHHHHH
T ss_pred             CCCCCCEEEEEEC--CCHHHHHHHHH-HHHHHHH
Confidence            5678889999999  99999999888 7765543

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=96.18  E-value=0.023  Score=45.59  Aligned_cols=82  Identities=9%  Similarity=-0.034  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCchHHHhcc----ccccCCC---CCCCCceEEEEeeCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQ---TALNDGLSLYESSHLRS  118 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~Pt---VP~g~~RlRI~lsA~HT  118 (153)
                      .+++++++++..++.+.|.+. |+.+. .+.+..+.+-+.+.....+..    +.++ |.   -+.+...+||+++   |
T Consensus       276 ~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~l~~~l~~~gi~v~-~~~~~~~~~~~~iRis~~---~  350 (367)
T 3euc_A          276 DEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVPDAAQTFDRLLARKVLIK-NVSKMHPLLANCLRVTVS---T  350 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECSCHHHHHHHHHTTTEECE-ECGGGCGGGTTEEEEECC---C
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECCCHHHHHHHHHHCCeEEE-ECCccCCCCCCEEEEecC---C
Confidence            678889999999999999988 77653 455677777666444444332    2221 11   1345689999976   9


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy5049         119 ANLWNRPHSPSLMAVF  134 (153)
Q Consensus       119 ~edId~L~~~~L~~~~  134 (153)
                      ++|++++++ +|+.+.
T Consensus       351 ~~~i~~~~~-~l~~~l  365 (367)
T 3euc_A          351 PEENAQFLE-AFAASL  365 (367)
T ss_dssp             HHHHHHHHH-HHHHHT
T ss_pred             HHHHHHHHH-HHHHHh
Confidence            999999998 776653

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=96.14  E-value=0.015  Score=47.92  Aligned_cols=88  Identities=10%  Similarity=-0.053  Sum_probs=58.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCccc------CC-CCCCeEEEEcC--CchHHHhcc---ccccCCCCCCC---CceEE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVY------GH-RDSPVVPVLVF--FFSKVGQTS---IGLGVEQTALN---DGLSL  110 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~------~~-s~SPIiPV~~g--~~~~~~~~a---~~i~~PtVP~g---~~RlR  110 (153)
                      ..+++++++++..++.+.|.+.|+.+.      .. ..+.++.+-+.  +.....+..   .....|..+.+   ...+|
T Consensus       333 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iR  412 (437)
T 3g0t_A          333 FRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEAMR  412 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHTTEECEESTTTTCCCTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHcCeEEeeccccCCCCCCEEE
Confidence            567899999999999999999888764      12 44566666554  223333322   11122332222   25699


Q ss_pred             EEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         111 YESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       111 I~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      |+++.. |++||+++++ +|..+.+
T Consensus       413 is~~~~-~~e~i~~~~~-~l~~~~~  435 (437)
T 3g0t_A          413 ICTSLL-PESQFPDLEK-RLQMLNA  435 (437)
T ss_dssp             EECSSS-CGGGHHHHHH-HHHHHHH
T ss_pred             EEEecC-CHHHHHHHHH-HHHHHHh
Confidence            999954 9999999998 7776654

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=96.14  E-value=0.01  Score=49.85  Aligned_cols=85  Identities=5%  Similarity=-0.106  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC--CCcccC--CCCCCeEEEEcCCc----hHHHhcc---ccccCCCCCCCCceEEEEeeC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL--GLIVYG--HRDSPVVPVLVFFF----SKVGQTS---IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~--G~~~~~--~s~SPIiPV~~g~~----~~~~~~a---~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      .+..++++++..++++.|++.  ++....  .+...++.|.+.+.    .......   ..+..|.   +...+|++++.
T Consensus       332 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~---~~~~iRi~~~~  408 (433)
T 1z7d_A          332 EKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDV---HDKTIRLTPPL  408 (433)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEE---TTTEEEECCCT
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecC---CCCEEEEECCc
Confidence            468899999999999999876  553211  24467888887643    1222222   2222332   56899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q psy5049         116 LRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~  135 (153)
                      .+|+|||+++++ +++.+.+
T Consensus       409 ~~t~e~i~~~l~-~l~~~l~  427 (433)
T 1z7d_A          409 CITKEQLDECTE-IIVKTVK  427 (433)
T ss_dssp             TCCHHHHHHHHH-HHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHH
Confidence            999999999998 7766543

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=96.13  E-value=0.025  Score=46.81  Aligned_cols=87  Identities=6%  Similarity=-0.158  Sum_probs=56.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-----CCcccCCCCCCeEEEEcCC---chHHHhcc----cc----ccCCCCCCCCceE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-----GLIVYGHRDSPVVPVLVFF---FSKVGQTS----IG----LGVEQTALNDGLS  109 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-----G~~~~~~s~SPIiPV~~g~---~~~~~~~a----~~----i~~PtVP~g~~Rl  109 (153)
                      ..+.+++++++..++.+.|.+.     |+.+...+.+.++.+-+.+   .....+..    +.    ..|...+.+...+
T Consensus       313 ~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~i  392 (425)
T 1vp4_A          313 LKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSM  392 (425)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTTCCCCSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcCCCCCCCeE
Confidence            3567888899999999999875     6665333446677777653   22222211    11    1232223456889


Q ss_pred             EEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         110 LYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       110 RI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      ||+++.. |++|++++++ .|+.+.
T Consensus       393 Ris~~~~-~~e~i~~~l~-~l~~~l  415 (425)
T 1vp4_A          393 RLSFCLP-PDEKIVEGIK-RLREVV  415 (425)
T ss_dssp             EEECSSS-CHHHHHHHHH-HHHHHH
T ss_pred             EEEeCCC-CHHHHHHHHH-HHHHHH
Confidence            9999874 9999999988 776554

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=96.13  E-value=0.035  Score=44.42  Aligned_cols=89  Identities=11%  Similarity=0.068  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCC---CCC-eEEEEcCC---chHHHhcc-----ccccCCCCCCCCceEEEEee
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHR---DSP-VVPVLVFF---FSKVGQTS-----IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s---~SP-IiPV~~g~---~~~~~~~a-----~~i~~PtVP~g~~RlRI~ls  114 (153)
                      ++.++++.++..++.+.|.+.|+.+....   .++ ++.+.+.+   .....+..     +.+++-..+.+...+||+++
T Consensus       286 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~  365 (393)
T 3kgw_A          286 ENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLL  365 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEec
Confidence            67789999999999999999888664211   133 44455542   22222221     22232222445678999985


Q ss_pred             C-CCCHHHHHHHHHHHHHHHHhc
Q psy5049         115 H-LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       115 A-~HT~edId~L~~~~L~~~~~~  136 (153)
                      + ..|++|++++++ +|+.+.+.
T Consensus       366 ~~~~~~~~i~~~~~-~l~~~l~~  387 (393)
T 3kgw_A          366 GYNATTENVDRVAE-ALREALQH  387 (393)
T ss_dssp             GGGCCHHHHHHHHH-HHHHHHHH
T ss_pred             ccCCCHHHHHHHHH-HHHHHHHh
Confidence            5 569999999999 88766554

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=96.12  E-value=0.037  Score=43.90  Aligned_cols=88  Identities=14%  Similarity=0.073  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCC--CCC-eEEEEcCC--chHHHhcc----ccccC---CCCC----------
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHR--DSP-VVPVLVFF--FSKVGQTS----IGLGV---EQTA----------  103 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s--~SP-IiPV~~g~--~~~~~~~a----~~i~~---PtVP----------  103 (153)
                      ++.+++++++..++.+.|.+. |+.+....  ..| ++.+.+.+  .....+..    +.+++   ...+          
T Consensus       255 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~  334 (382)
T 4hvk_A          255 REEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMA  334 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC--------CCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHH
Confidence            677888999999999999976 66543221  123 66666643  22233222    22211   1111          


Q ss_pred             CC------CceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         104 LN------DGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       104 ~g------~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      .|      ...+|++++..+|+||++++++ +|+.+.+
T Consensus       335 ~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~-~l~~~~~  371 (382)
T 4hvk_A          335 CGLKHEEAHGTLLLTLGRYNTDEDVDRLLE-VLPGVIE  371 (382)
T ss_dssp             TTCCHHHHHTEEEEECCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             cCCChhhcCCeEEEEcCCCCCHHHHHHHHH-HHHHHHH
Confidence            01      5789999999999999999999 7776554

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=96.12  E-value=0.014  Score=48.84  Aligned_cols=88  Identities=11%  Similarity=-0.027  Sum_probs=57.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC--CCccc--CCCCCCeEEEEcCCc---------hHHHhcc----------ccccCCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL--GLIVY--GHRDSPVVPVLVFFF---------SKVGQTS----------IGLGVEQT  102 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~--G~~~~--~~s~SPIiPV~~g~~---------~~~~~~a----------~~i~~PtV  102 (153)
                      .++..++++++..++++.|.+.  ++...  ..+...++.+.+..+         ..+..+.          .+..+| +
T Consensus       340 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-~  418 (452)
T 3n5m_A          340 NENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMT-T  418 (452)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTS-S
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcc-c
Confidence            4678899999999999999865  32210  113344555554221         1111221          333444 4


Q ss_pred             CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         103 ALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       103 P~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +.+...+||+++..+|+|||+++++ +|+.+.+
T Consensus       419 ~~~~~~iRi~~~~~~t~e~i~~~l~-~l~~~l~  450 (452)
T 3n5m_A          419 AGYNNILTLAPPLVISSEEIAFVIG-TLKTAME  450 (452)
T ss_dssp             TTCCCEEEECCCTTCCHHHHHHHHH-HHHHHHT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHH-HHHHHHH
Confidence            6678999999999999999999998 7776543

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=96.12  E-value=0.016  Score=46.98  Aligned_cols=88  Identities=8%  Similarity=-0.000  Sum_probs=57.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCC------CCCCeEEEEcCCc-----hHHHhcc----ccc--cC-CC-----
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGH------RDSPVVPVLVFFF-----SKVGQTS----IGL--GV-EQ-----  101 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~------s~SPIiPV~~g~~-----~~~~~~a----~~i--~~-Pt-----  101 (153)
                      -.+.+++.+++..++.+.|++. |+.+.+.      ..+.++++.+.+.     ....+..    +.+  .| |.     
T Consensus       252 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~  331 (388)
T 1b9h_A          252 LDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDA  331 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccCccccChH
Confidence            3567788889999999999987 7655331      2256888888642     1222211    111  22 21     


Q ss_pred             -----CCCC----------------CceEEEEeeCCC-CHHHHHHHHHHHHHHHH
Q psy5049         102 -----TALN----------------DGLSLYESSHLR-SANLWNRPHSPSLMAVF  134 (153)
Q Consensus       102 -----VP~g----------------~~RlRI~lsA~H-T~edId~L~~~~L~~~~  134 (153)
                           ++..                ...+|++++..+ |+|||+++++ +++.+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~-~l~~~~  385 (388)
T 1b9h_A          332 FWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAE-IIADAV  385 (388)
T ss_dssp             HHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHH-HHHHHH
T ss_pred             hHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHH-HHHHHH
Confidence                 1110                135999999999 9999999999 777654

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=96.09  E-value=0.014  Score=47.47  Aligned_cols=83  Identities=8%  Similarity=-0.038  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCccc--CCCCCCeEEEEcCC-chHHHhcc--cc-ccCCCCCCCCceEEEEeeCCCCHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVY--GHRDSPVVPVLVFF-FSKVGQTS--IG-LGVEQTALNDGLSLYESSHLRSAN  120 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~--~~s~SPIiPV~~g~-~~~~~~~a--~~-i~~PtVP~g~~RlRI~lsA~HT~e  120 (153)
                      ++.+++++++..++++.|.+.+....  ..+.+.++.+.+.+ .....+..  .. ...|   -+...+||+++..+|+|
T Consensus       302 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~gi~v~~---~~~~~iRi~~~~~~~~~  378 (392)
T 3ruy_A          302 EKLTERSLQLGEKLVGQLKEIDNPMITEVRGKGLFIGIELNEPARPYCEQLKAAGLLCKE---THENVIRIAPPLVISEE  378 (392)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEEETTEEEEEESSCSHHHHHHHHTTTEECCC---BTTTEEEECCCTTCCHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCceEEEeeeeEEEEEEcchHHHHHHHHHHCCcEEec---CCCCEEEEECCCCCCHH
Confidence            67899999999999999998864221  12346777777653 23333222  22 2223   34689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy5049         121 LWNRPHSPSLMAV  133 (153)
Q Consensus       121 dId~L~~~~L~~~  133 (153)
                      |++++++ +|+.+
T Consensus       379 ~i~~~~~-~l~~~  390 (392)
T 3ruy_A          379 DLEWAFQ-KIKAV  390 (392)
T ss_dssp             HHHHHHH-HHHHH
T ss_pred             HHHHHHH-HHHHH
Confidence            9999988 77654

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=96.01  E-value=0.048  Score=44.28  Aligned_cols=90  Identities=6%  Similarity=-0.126  Sum_probs=60.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccC-CCCCCeEEEEcCC----chHHHhcc-------ccccCCCC---CCCCceEE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYG-HRDSPVVPVLVFF----FSKVGQTS-------IGLGVEQT---ALNDGLSL  110 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~-~s~SPIiPV~~g~----~~~~~~~a-------~~i~~PtV---P~g~~RlR  110 (153)
                      ..++++++.++..++.+.|.+.|+.+.. .+.++++.+.+..    ...+.+..       ....+|..   |.+...+|
T Consensus       280 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~r  359 (417)
T 3n0l_A          280 WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLR  359 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeE
Confidence            3678889999999999999998886532 2446677776642    22333322       22233433   34557899


Q ss_pred             EEeeC----CCCHHHHHHHHHHHHHHHHhc
Q psy5049         111 YESSH----LRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       111 I~lsA----~HT~edId~L~~~~L~~~~~~  136 (153)
                      ++.+.    .+|++||+++++ +|+.+.+.
T Consensus       360 i~~~~~~~~~~~~~~i~~~~~-~l~~~l~~  388 (417)
T 3n0l_A          360 LGTPALTARGFKEKEMEIVSN-YIADILDD  388 (417)
T ss_dssp             EECHHHHHTTCCHHHHHHHHH-HHHHHHHT
T ss_pred             ecCHHHhhCCCCHHHHHHHHH-HHHHHHhc
Confidence            98754    478999999999 88766654

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=96.01  E-value=0.018  Score=49.35  Aligned_cols=89  Identities=13%  Similarity=0.032  Sum_probs=60.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCC-CCCCeEEEEcC----CchHHHhcc----ccccC---C--CCCCCCceEEE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGH-RDSPVVPVLVF----FFSKVGQTS----IGLGV---E--QTALNDGLSLY  111 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~-s~SPIiPV~~g----~~~~~~~~a----~~i~~---P--tVP~g~~RlRI  111 (153)
                      .++.++++.+|..++.+.|.+.|+.+... ++++.+.|-+.    +...+.+..    +.+..   |  ..|.+.+.+||
T Consensus       323 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRi  402 (483)
T 1rv3_A          323 FKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRL  402 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEe
Confidence            36788999999999999999999876432 23455555553    222333322    22221   3  23567789999


Q ss_pred             EeeCCCC----HHHHHHHHHHHHHHHHh
Q psy5049         112 ESSHLRS----ANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       112 ~lsA~HT----~edId~L~~~~L~~~~~  135 (153)
                      ++.+.+|    ++|++++++ +|..+.+
T Consensus       403 s~~~~~t~g~~~edi~~~~~-~l~~~l~  429 (483)
T 1rv3_A          403 GTPALTSRGLLEKDFQKVAH-FIHRGIE  429 (483)
T ss_dssp             ECHHHHHTTCCHHHHHHHHH-HHHHHHH
T ss_pred             ecCCcccCCCCHHHHHHHHH-HHHHHHH
Confidence            9987777    999999998 7766543

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=95.99  E-value=0.033  Score=45.70  Aligned_cols=82  Identities=4%  Similarity=-0.064  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEE-EEcCCchHHHhcc---ccccCCCCCCCCceEEEEeeCCCCHHHHH
Q psy5049          48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVP-VLVFFFSKVGQTS---IGLGVEQTALNDGLSLYESSHLRSANLWN  123 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiP-V~~g~~~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~HT~edId  123 (153)
                      +.+++++++..++.+.|.+.|+.+.. +....+- +-+.+.....+..   .....|    |...+||+++ .+|+++|+
T Consensus       329 ~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~----g~~~iRis~~-~~~~~~i~  402 (418)
T 3rq1_A          329 CYYQLIRDRADIFKQEAAQVGLPMLP-YRGGFFITIPTDSANAICEELKKEHIYVIA----LANGIRIAAC-GIPKCQMT  402 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCC-CCSSSEEEEECTTHHHHHHHHHHTTEECEE----CSSEEEEEGG-GSCHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCC-CCceEEEEcCCCCHHHHHHHHHhCCEEEec----CCCCeEEEEe-cCCHHHHH
Confidence            55788899999999999988987643 4444332 2233444433333   222333    3567999977 68999999


Q ss_pred             HHHHHHHHHHHhc
Q psy5049         124 RPHSPSLMAVFRG  136 (153)
Q Consensus       124 ~L~~~~L~~~~~~  136 (153)
                      ++++ .|+.+.+.
T Consensus       403 ~~~~-~l~~~l~~  414 (418)
T 3rq1_A          403 GLAE-KIYNAMKS  414 (418)
T ss_dssp             THHH-HHHHHHHH
T ss_pred             HHHH-HHHHHHHH
Confidence            9998 77766544

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=95.99  E-value=0.031  Score=51.35  Aligned_cols=32  Identities=13%  Similarity=0.033  Sum_probs=28.0

Q ss_pred             CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         104 LNDGLSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       104 ~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                      .+..++|+++|..+|++|++++++ +|..+.+.
T Consensus       534 ~~~~~ir~~~s~g~t~e~i~~Ll~-aL~~i~~~  565 (730)
T 1c4k_A          534 SDLNSILFLMTPAETPAKMNNLIT-QLLQLQRL  565 (730)
T ss_dssp             ECSSEEEEECCTTCCHHHHHHHHH-HHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHH-HHHHHHHh
Confidence            367899999999999999999999 88777653

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=95.98  E-value=0.044  Score=44.23  Aligned_cols=82  Identities=13%  Similarity=-0.038  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC-CchHHHhcc---ccccCCCCCCCCceEEEEeeCCCCHHHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF-FFSKVGQTS---IGLGVEQTALNDGLSLYESSHLRSANLW  122 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g-~~~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~HT~edI  122 (153)
                      ++.+++++++..++.+.|.+.|+.+. .+.++++.+-++ +.....+..   .....|.  .....+||+++   |++|+
T Consensus       281 ~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~--~~~~~iRis~~---~~~~i  354 (369)
T 3cq5_A          281 LGTVEKLSVERVRVAARLEELGYAVV-PSESNFVFFGDFSDQHAAWQAFLDRGVLIRDV--GIAGHLRTTIG---VPEEN  354 (369)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHTCEEE-CCSSSEEEEECCSSHHHHHHHHHHTTEECBCC--SCTTEEEEECC---CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEC-CCCCeEEEEECCCCHHHHHHHHHHCCEEEEEC--CCCCeEEEEeC---CHHHH
Confidence            56788999999999999998888764 456788777665 333333322   2223333  12468999997   89999


Q ss_pred             HHHHHHHHHHHHh
Q psy5049         123 NRPHSPSLMAVFR  135 (153)
Q Consensus       123 d~L~~~~L~~~~~  135 (153)
                      +++++ +|+.+.+
T Consensus       355 ~~~~~-~l~~~~~  366 (369)
T 3cq5_A          355 DAFLD-AAAEIIK  366 (369)
T ss_dssp             HHHHH-HHHHHHT
T ss_pred             HHHHH-HHHHHHh
Confidence            99998 7776643

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=95.97  E-value=0.044  Score=46.33  Aligned_cols=89  Identities=7%  Similarity=-0.063  Sum_probs=59.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCC---CCCC-eEEEEcCC----ch---HHHhcc---ccccCCCCCCCCceEE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGH---RDSP-VVPVLVFF----FS---KVGQTS---IGLGVEQTALNDGLSL  110 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~---s~SP-IiPV~~g~----~~---~~~~~a---~~i~~PtVP~g~~RlR  110 (153)
                      -+.+.++.+++..++++.|.+. |+.+...   ..|| |+++.+.+    ..   ......   .....+.- ...+.+|
T Consensus       271 ~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~-~~~g~iR  349 (377)
T 3e77_A          271 AAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGH-RSVGGIR  349 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCC-TTTCSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCC-CcCCEEE
Confidence            3778888999999999999987 6653221   2367 58888875    11   122211   11122221 1234599


Q ss_pred             EEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         111 YESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       111 I~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                      +++...+|+||||++++ +|+++.+.
T Consensus       350 iS~~~~~t~edId~l~~-al~~~~~~  374 (377)
T 3e77_A          350 ASLYNAVTIEDVQKLAA-FMKKFLEM  374 (377)
T ss_dssp             EECCTTSCHHHHHHHHH-HHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHH-HHHHHHHH
Confidence            99999999999999999 88877654

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=95.94  E-value=0.015  Score=47.24  Aligned_cols=87  Identities=14%  Similarity=-0.064  Sum_probs=57.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCC-------CCCCeEEEEcCC-----chHHHhcc----cccc---C-----C
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGH-------RDSPVVPVLVFF-----FSKVGQTS----IGLG---V-----E  100 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~-------s~SPIiPV~~g~-----~~~~~~~a----~~i~---~-----P  100 (153)
                      ..++..++.+++..++++.|.+.|+.+...       ....++++.+.+     .....+..    +.++   +     |
T Consensus       266 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~  345 (391)
T 3dr4_A          266 RVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMP  345 (391)
T ss_dssp             THHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSG
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccCh
Confidence            346778889999999999999888765332       112357887765     23333322    2111   1     1


Q ss_pred             C------------CCCCCceEEEEeeCCCCHHHHHHHHHHHHHH
Q psy5049         101 Q------------TALNDGLSLYESSHLRSANLWNRPHSPSLMA  132 (153)
Q Consensus       101 t------------VP~g~~RlRI~lsA~HT~edId~L~~~~L~~  132 (153)
                      .            .......+|++++..+|+|||+++++ +++.
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~-~l~~  388 (391)
T 3dr4_A          346 PYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIA-ALDQ  388 (391)
T ss_dssp             GGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHH-HHHT
T ss_pred             hhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHH-HHHH
Confidence            0            01135689999999999999999988 6654

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=95.93  E-value=0.03  Score=44.81  Aligned_cols=88  Identities=10%  Similarity=-0.009  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHHHHHHHH-HhCCCcccCC-----CCCCeEEEEcCCchHHHhcc---ccccCCCC--CCCCceEEEE-ee
Q psy5049          47 IRRISVLAHNTRYFRRKL-NRLGLIVYGH-----RDSPVVPVLVFFFSKVGQTS---IGLGVEQT--ALNDGLSLYE-SS  114 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L-~~~G~~~~~~-----s~SPIiPV~~g~~~~~~~~a---~~i~~PtV--P~g~~RlRI~-ls  114 (153)
                      ++.+++++++..++.+.| .+.|+.+...     ..++++.+.+.+.....+..   .....|..  +.+...+||+ +.
T Consensus       280 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~  359 (385)
T 2bkw_A          280 HKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMG  359 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEecCCHHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccc
Confidence            567889999999999999 8878765421     13678888876533333322   11122221  2346789999 55


Q ss_pred             C---CCCHHHHHHHHHHHHHHHHh
Q psy5049         115 H---LRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       115 A---~HT~edId~L~~~~L~~~~~  135 (153)
                      .   .+|+||++++++ +|+.+.+
T Consensus       360 ~~~~~~~~e~i~~~~~-~l~~~~~  382 (385)
T 2bkw_A          360 VTACNKNLPYMKNCFD-LIKLALQ  382 (385)
T ss_dssp             GGTSSTTCTHHHHHHH-HHHHHTT
T ss_pred             cccccCCHHHHHHHHH-HHHHHHH
Confidence            3   579999999998 7776654

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=95.86  E-value=0.017  Score=49.42  Aligned_cols=85  Identities=9%  Similarity=-0.098  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC--CCc--cc-CCCCCCeEEEEcCCchHHHhcc-----ccc-cCCCCCCCCceEEEEeeC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL--GLI--VY-GHRDSPVVPVLVFFFSKVGQTS-----IGL-GVEQTALNDGLSLYESSH  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~--G~~--~~-~~s~SPIiPV~~g~~~~~~~~a-----~~i-~~PtVP~g~~RlRI~lsA  115 (153)
                      ++.+++++++..+|++.|.++  ++.  +. ..+...++.+-+.+......++     ..+ ..|   .|...+||+++.
T Consensus       374 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~---~g~~~iRi~~~~  450 (472)
T 1ohv_A          374 EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNKLISIARNKGVMLGG---CGDKSIRFRPTL  450 (472)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECSSHHHHHHHHHHHHHTTEECEE---ETTTEEEECCCT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeCChhHHHHHHHHHHHCCeEEec---CCCCEEEEECCC
Confidence            567899999999999999875  232  10 1234678777666533333332     122 223   356899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q psy5049         116 LRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~  135 (153)
                      .||++||+++++ +|+.+.+
T Consensus       451 ~~t~e~i~~~~~-~l~~~l~  469 (472)
T 1ohv_A          451 VFRDHHAHLFLN-IFSDILA  469 (472)
T ss_dssp             TCCHHHHHHHHH-HHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHH
Confidence            999999999998 7776544

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=95.85  E-value=0.024  Score=46.39  Aligned_cols=87  Identities=8%  Similarity=-0.127  Sum_probs=56.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC----------------chHHHh-cc----c----cccC-
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF----------------FSKVGQ-TS----I----GLGV-   99 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~----------------~~~~~~-~a----~----~i~~-   99 (153)
                      ..+.+++++++..++.+.|++.|+.+.....+..+.+-+..                ...... +.    +    +..| 
T Consensus       306 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~  385 (422)
T 3fvs_A          306 FVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFY  385 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhc
Confidence            36788899999999999999999875433445554444322                111111 11    1    1111 


Q ss_pred             --CCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         100 --EQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       100 --PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                        |..+.+...+||+++.  |+++|+++++ .|+.+.+
T Consensus       386 ~~~~~~~~~~~iRis~~~--~~e~i~~~l~-~l~~~l~  420 (422)
T 3fvs_A          386 SVPHQKHFDHYIRFCFVK--DEATLQAMDE-KLRKWKV  420 (422)
T ss_dssp             CHHHHTTSCSEEEEECCC--CHHHHHHHHH-HHHHHHH
T ss_pred             CCcCCCCCCCeEEEEecC--CHHHHHHHHH-HHHHHHh
Confidence              2235678999999886  9999999988 7766543

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=95.83  E-value=0.032  Score=45.98  Aligned_cols=90  Identities=9%  Similarity=0.038  Sum_probs=58.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCCCC-----C-CeEEEEcCC-------chHHHhcc-----cc---cc---CC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHRD-----S-PVVPVLVFF-------FSKVGQTS-----IG---LG---VE  100 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~-----S-PIiPV~~g~-------~~~~~~~a-----~~---i~---~P  100 (153)
                      .++..++.+++..++++.|.+. |+.+.+.++     . +++++.+.+       .....+..     +.   ++   .|
T Consensus       265 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p  344 (418)
T 2c81_A          265 LDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLP  344 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccc
Confidence            4667888889999999999886 665532222     2 478787752       22222211     12   21   12


Q ss_pred             C-----------------------------CCC----CCceEEEEeeCCC-CHHHHHHHHHHHHHHHHhc
Q psy5049         101 Q-----------------------------TAL----NDGLSLYESSHLR-SANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       101 t-----------------------------VP~----g~~RlRI~lsA~H-T~edId~L~~~~L~~~~~~  136 (153)
                      .                             +|.    ....+|++++..+ |+|||+++++ +++.+.+.
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~-~l~~~~~~  413 (418)
T 2c81_A          345 VHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVD-AVAELARK  413 (418)
T ss_dssp             GGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHH-HHHHHHHT
T ss_pred             cccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHH-HHHHHHHh
Confidence            1                             010    0258999999999 9999999999 88877654

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=95.83  E-value=0.027  Score=45.64  Aligned_cols=81  Identities=9%  Similarity=-0.099  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC-----chHHHh-cc--------ccccCCCCCCCCceEEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF-----FSKVGQ-TS--------IGLGVEQTALNDGLSLYE  112 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~-----~~~~~~-~a--------~~i~~PtVP~g~~RlRI~  112 (153)
                      ++.+++++++..++.+.|.+.|+.+.....+.++.+-+.+     .....+ +.        ....|+..+.+...+||+
T Consensus       289 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis  368 (386)
T 1u08_A          289 LALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLC  368 (386)
T ss_dssp             HTHHHHHHHHHHHHHHHTTSSSCEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEE
Confidence            5678889999999999999888876433335677776653     222222 11        122344444567889999


Q ss_pred             eeCCCCHHHHHHHHHHHH
Q psy5049         113 SSHLRSANLWNRPHSPSL  130 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L  130 (153)
                      ++  ++++||+++++ .|
T Consensus       369 ~~--~~~~~i~~~~~-~l  383 (386)
T 1u08_A          369 FA--KKESTLLAAAE-RL  383 (386)
T ss_dssp             CC--SCHHHHHHHHH-HH
T ss_pred             Ec--CCHHHHHHHHH-HH
Confidence            97  48999999877 54

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=95.77  E-value=0.015  Score=47.38  Aligned_cols=84  Identities=17%  Similarity=0.054  Sum_probs=53.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCC-CCCC--eEEEEcCC-----chHHHhcc----ccc--cCC-C---C-CCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGH-RDSP--VVPVLVFF-----FSKVGQTS----IGL--GVE-Q---T-ALN  105 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~-s~SP--IiPV~~g~-----~~~~~~~a----~~i--~~P-t---V-P~g  105 (153)
                      -++.+++.+++..++.+.|.+. |+.+.+. ..++  .++|.+.+     .+...+..    +.+  .|| .   . |..
T Consensus       268 l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~  347 (390)
T 3b8x_A          268 LPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVL  347 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhh
Confidence            3567888899999999999886 6654322 1233  36776652     22333322    222  222 2   2 321


Q ss_pred             C------------------ceEEEEeeCCCCHHHHHHHHHHHH
Q psy5049         106 D------------------GLSLYESSHLRSANLWNRPHSPSL  130 (153)
Q Consensus       106 ~------------------~RlRI~lsA~HT~edId~L~~~~L  130 (153)
                      +                  ..+|++++..+|+|||+++++ +|
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~-~l  389 (390)
T 3b8x_A          348 KYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLRE-VL  389 (390)
T ss_dssp             TTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHH-HT
T ss_pred             hcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHH-hh
Confidence            1                  369999999999999999887 54

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=95.71  E-value=0.04  Score=43.98  Aligned_cols=90  Identities=8%  Similarity=-0.040  Sum_probs=56.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhC-CCcccCC----CCC-CeEEEEcCC-----chHHHhcc----cccc--C-CC-----
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRL-GLIVYGH----RDS-PVVPVLVFF-----FSKVGQTS----IGLG--V-EQ-----  101 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~----s~S-PIiPV~~g~-----~~~~~~~a----~~i~--~-Pt-----  101 (153)
                      ..++.+++.+++..++.+.|.+. |+.+...    ..+ .++++.+..     .....+..    +.++  + |.     
T Consensus       245 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~  324 (375)
T 2fnu_A          245 KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQL  324 (375)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccccccccccchh
Confidence            34678889999999999999986 6654322    112 345665543     12222221    2222  2 22     


Q ss_pred             ---------CC----CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         102 ---------TA----LNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       102 ---------VP----~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                               +|    .+...+||+++..+|++|++++++ +|+.+.+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~-~l~~~~~  370 (375)
T 2fnu_A          325 YQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAH-SVLKTFE  370 (375)
T ss_dssp             HHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             hhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHH-HHHHHHH
Confidence                     11    012579999999999999999999 8876654

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=95.69  E-value=0.042  Score=46.45  Aligned_cols=87  Identities=10%  Similarity=0.042  Sum_probs=57.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC--CCcccCCCCCCeEEEEcCC--chHHHhcc--ccccCCCCCCCCceEEEEeeCCCCH
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL--GLIVYGHRDSPVVPVLVFF--FSKVGQTS--IGLGVEQTALNDGLSLYESSHLRSA  119 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~--G~~~~~~s~SPIiPV~~g~--~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~HT~  119 (153)
                      ..+++++..++..++++.|.+.  |+.+.+.+..+++.+...+  .....+..  ..|..+... ....+|++++ .+|+
T Consensus       343 ~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~L~~~Gi~v~~~~-~~~~~ri~~~-~~t~  420 (497)
T 3mc6_A          343 YIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHFNALQ-KPVALHMAFT-RLSA  420 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSEEEEECTTTTHHHHHHHHHTTTCBCEECC-SSCCEEEECC-TTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeEEEEeCCCCCHHHHHHHHHhCCEEEecCC-CCCeEEEEEe-CCCH
Confidence            3677889999999999999995  8877555556676665442  22222222  222111111 1236899999 8899


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy5049         120 NLWNRPHSPSLMAVFR  135 (153)
Q Consensus       120 edId~L~~~~L~~~~~  135 (153)
                      +|++++++ +|+.+.+
T Consensus       421 e~i~~~~~-~L~~~l~  435 (497)
T 3mc6_A          421 HVVDEICD-ILRTTVQ  435 (497)
T ss_dssp             CTHHHHHH-HHHHHHH
T ss_pred             HHHHHHHH-HHHHHHH
Confidence            99999999 7765543

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=95.69  E-value=0.04  Score=46.84  Aligned_cols=89  Identities=11%  Similarity=0.071  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCC-CC--CeEEEEcC-CchHHHhcc--ccccCCCC--C-CCCceEEEEeeCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHR-DS--PVVPVLVF-FFSKVGQTS--IGLGVEQT--A-LNDGLSLYESSHLR  117 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s-~S--PIiPV~~g-~~~~~~~~a--~~i~~PtV--P-~g~~RlRI~lsA~H  117 (153)
                      .+.++++.++..++.+.|.+.|+.+...+ ..  .++.+..+ +.....+..  ..+..|+.  | .....+||+++..+
T Consensus       343 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~  422 (474)
T 1wyu_B          343 KKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETE  422 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCcEecCCCCcceEEEEEcCCCCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCC
Confidence            44578889999999999998887652212 11  22221001 112222221  23322322  1 12578999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhc
Q psy5049         118 SANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       118 T~edId~L~~~~L~~~~~~  136 (153)
                      |++|++++++ +|+.+.+.
T Consensus       423 t~e~id~~~~-~L~~~~~~  440 (474)
T 1wyu_B          423 AKETLEAFAE-AMGALLKK  440 (474)
T ss_dssp             CHHHHHHHHH-HHHHHHTS
T ss_pred             CHHHHHHHHH-HHHHHHHh
Confidence            9999999999 88776655

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=95.68  E-value=0.055  Score=43.85  Aligned_cols=85  Identities=9%  Similarity=0.112  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCe-EEEEcC--CchHHHhcc----ccccCCCCCCCCceEEEEeeCCCCH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPV-VPVLVF--FFSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSA  119 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPI-iPV~~g--~~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~  119 (153)
                      .+.+++++++..++.+.|.+.|+.+.. +.+.. +.+-+.  +.....+..    +.+++-........+||+++  +|+
T Consensus       303 ~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~  379 (398)
T 3ele_A          303 TGDINAYKENRDLLYEGLTRIGYHCFK-PDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYC--VDR  379 (398)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTCCEEC-CSBSSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTCTTEEEEECC--SCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCeecC-CCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCCCCeEEEEec--CCH
Confidence            346889999999999999998887643 44444 444443  222332222    22222222222579999995  799


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy5049         120 NLWNRPHSPSLMAVFR  135 (153)
Q Consensus       120 edId~L~~~~L~~~~~  135 (153)
                      |+|+++++ .|..+.+
T Consensus       380 e~i~~~l~-~l~~~l~  394 (398)
T 3ele_A          380 EMIKHSMP-AFEKIYK  394 (398)
T ss_dssp             HHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHH-HHHHHHH
Confidence            99999998 7766543

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=95.62  E-value=0.017  Score=47.08  Aligned_cols=84  Identities=11%  Similarity=0.003  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC--CCccc--CCCCCCeEEEEcCCc---hHHHhcc---ccccCCCCCCCCceEEEEeeCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL--GLIVY--GHRDSPVVPVLVFFF---SKVGQTS---IGLGVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~--G~~~~--~~s~SPIiPV~~g~~---~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~  116 (153)
                      ++.+++++++..++++.|++.  ++...  ..+.+.++.+.+.++   ....+..   .....|.   +...+|++++..
T Consensus       301 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~---~~~~iRis~~~~  377 (397)
T 2ord_A          301 EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCFENKLLVVPA---GNNTIRFLPPLT  377 (397)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHHHTTEECEEE---TTTEEEECCCTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChHHHHHHHHHHHHCCCEEccC---CCCEEEEECCcC
Confidence            578999999999999999876  34321  123467888877643   2222222   2222332   467899999999


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q psy5049         117 RSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       117 HT~edId~L~~~~L~~~~  134 (153)
                      +|+||++++++ +|+.+.
T Consensus       378 ~~~e~i~~~~~-~l~~~l  394 (397)
T 2ord_A          378 VEYGEIDLAVE-TLKKVL  394 (397)
T ss_dssp             CCHHHHHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHH-HHHHHH
Confidence            99999999998 776554

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=95.56  E-value=0.052  Score=43.79  Aligned_cols=86  Identities=14%  Similarity=0.072  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCC---CCeEEEEcCC---chHHHhcc-----ccccCCCCCCCCceEEEEeeC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRD---SPVVPVLVFF---FSKVGQTS-----IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~---SPIiPV~~g~---~~~~~~~a-----~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      ++.+++++++..++.+.|.+.|+.+.....   ..++.+.+.+   .....+..     +.+++-..+.+...+||++.+
T Consensus       294 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~  373 (393)
T 1vjo_A          294 ANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMG  373 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCc
Confidence            578899999999999999988887643221   3577777642   22222211     222211112346789999655


Q ss_pred             -CCCHHHHHHHHHHHHHHH
Q psy5049         116 -LRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       116 -~HT~edId~L~~~~L~~~  133 (153)
                       ..++++++++++ +|+.+
T Consensus       374 ~~~~~~~i~~~~~-~l~~~  391 (393)
T 1vjo_A          374 FNSRKESVDQLIP-ALEQV  391 (393)
T ss_dssp             GGCSHHHHHHHHH-HHHHH
T ss_pred             cCChHHHHHHHHH-HHHHH
Confidence             456778999988 77654

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=95.54  E-value=0.026  Score=46.85  Aligned_cols=89  Identities=10%  Similarity=-0.035  Sum_probs=58.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC----CcccCCCCCCeEEEEc--------CCchHHHhcc------ccccCCCCCCCCc
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG----LIVYGHRDSPVVPVLV--------FFFSKVGQTS------IGLGVEQTALNDG  107 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G----~~~~~~s~SPIiPV~~--------g~~~~~~~~a------~~i~~PtVP~g~~  107 (153)
                      .++.+++++++..++++.|.+.+    ......+...++.+.+        ++...+..+.      .....|. ..+..
T Consensus       318 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-~~~~~  396 (439)
T 3dxv_A          318 RDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYV-GMNGN  396 (439)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEE-STTSC
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeec-CCCCC
Confidence            36788999999999999998652    1111123456777766        2333233322      2222333 22358


Q ss_pred             eEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         108 LSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       108 RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                      .+||+++..+|++|++++++ .|+.+.+.
T Consensus       397 ~iRi~~~~~~t~e~i~~~l~-~l~~~l~~  424 (439)
T 3dxv_A          397 VLEFTPPLTITETDIHKALD-LLDRAFSE  424 (439)
T ss_dssp             EEEECCCTTCCHHHHHHHHH-HHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHH-HHHHHHHH
Confidence            99999999999999999999 77766543

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=95.54  E-value=0.11  Score=41.35  Aligned_cols=82  Identities=13%  Similarity=0.106  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCc-ccCCCCCCeEEEEcCC--chHHHhcc----ccc----cCCCCCCCCceEEEEee
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLI-VYGHRDSPVVPVLVFF--FSKVGQTS----IGL----GVEQTALNDGLSLYESS  114 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~-~~~~s~SPIiPV~~g~--~~~~~~~a----~~i----~~PtVP~g~~RlRI~ls  114 (153)
                      .+++++++++..++++.|++. |+. +. .+.++++.+-+.+  .....+..    ..+    .|+  +.+...+||+++
T Consensus       266 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~--~~~~~~iRis~~  342 (361)
T 3ftb_A          266 EESLLWIKKERKRFIEELNKIGFIKRVF-SPHANFVLCRLENISGEKLYDSLLKEDIVIRRCCNFI--GLDDSFVRFAIK  342 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSEEEEE-CCSSSEEEEEESSSCHHHHHHHHHTTTEECEECTTST--TCCTTEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCceec-CCCCeEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCC--CCCCCEEEEEcC
Confidence            577888999999999999987 555 43 4567777777753  22332222    222    222  345789999986


Q ss_pred             CCCCHHHHHHHHHHHHHHHHh
Q psy5049         115 HLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~  135 (153)
                         +++|++++++ +++.+.+
T Consensus       343 ---~~~~~~~l~~-~l~~~~~  359 (361)
T 3ftb_A          343 ---DEKKNTKFLR-ALKGVEN  359 (361)
T ss_dssp             ---CHHHHHHHHH-HHHHHHH
T ss_pred             ---CHHHHHHHHH-HHHHHHh
Confidence               8999999998 8877664

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=95.53  E-value=0.024  Score=46.15  Aligned_cols=86  Identities=9%  Similarity=0.020  Sum_probs=57.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCchHHHhcc-----ccc-cCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFFSKVGQTS-----IGL-GVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~~~~~~~a-----~~i-~~PtVP~g~~RlRI~lsA  115 (153)
                      .++..++++++..++++.|.+.    +......+...++.+.+.+...+..+.     ..+ ..|   -+...+||+++.
T Consensus       298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~---~~~~~iRi~~~~  374 (395)
T 3nx3_A          298 EEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVKVAKVIQKCQENALLLIS---CGENDLRFLPPL  374 (395)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHHHTTEECEE---ETTTEEEECCCT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeEEEEEEEEeCCcchHHHHHHHHHHCCCEEec---CCCCEEEEECCC
Confidence            3577889999999999998764    211111234578888776532222222     222 222   247899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q psy5049         116 LRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~~  135 (153)
                      .+|+||++++++ +|+.+.+
T Consensus       375 ~~t~e~i~~~l~-~l~~~l~  393 (395)
T 3nx3_A          375 ILQKEHIDEMSE-KLRKALK  393 (395)
T ss_dssp             TCCHHHHHHHHH-HHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHH
Confidence            999999999998 7776543

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=95.52  E-value=0.043  Score=44.02  Aligned_cols=80  Identities=14%  Similarity=0.064  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc-hHHHhcc--ccc-cCCCCCCCCceEEEEeeCCCCHHHHH
Q psy5049          48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF-SKVGQTS--IGL-GVEQTALNDGLSLYESSHLRSANLWN  123 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~-~~~~~~a--~~i-~~PtVP~g~~RlRI~lsA~HT~edId  123 (153)
                      +.+++++++..++++.|.+.+.... .+.+.++.+.+.++ ....+..  ..| ..|.   +...+||+++..+|++|++
T Consensus       290 ~~~~~~~~~~~~l~~~L~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~l~~~gi~~~~~---~~~~iRi~~~~~~~~~~i~  365 (375)
T 2eh6_A          290 KLLPHVREVGNYFKEKLKELGKGKV-KGRGLMLGLELERECKDYVLKALEKGLLINCT---AGKVLRFLPPLIIQKEHID  365 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSEE-EEETTEEEEECSSCCHHHHHHHHHTTEECEEE---TTTEEEECCCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEEEEEEEcCcHHHHHHHHHHCCCEEecC---CCCEEEEECCCCCCHHHHH
Confidence            6788999999999999998775332 34567888877642 3333222  111 2222   4678999999999999999


Q ss_pred             HHHHHHHHH
Q psy5049         124 RPHSPSLMA  132 (153)
Q Consensus       124 ~L~~~~L~~  132 (153)
                      ++++ +|+.
T Consensus       366 ~~~~-~l~~  373 (375)
T 2eh6_A          366 RAIS-VLRE  373 (375)
T ss_dssp             HHHH-HHHH
T ss_pred             HHHH-HHHH
Confidence            9888 7654

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=95.51  E-value=0.14  Score=42.10  Aligned_cols=87  Identities=7%  Similarity=-0.063  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc------h---HHHhcc--c-cc-cCCCC---CCCCceEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF------S---KVGQTS--I-GL-GVEQT---ALNDGLSL  110 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~------~---~~~~~a--~-~i-~~PtV---P~g~~RlR  110 (153)
                      .+.+++++++..++.+.|.+.|+.+.....+..+.+-+.+.      .   ...+..  . .| ..|.-   +.+...+|
T Consensus       323 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iR  402 (428)
T 1iay_A          323 RESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFR  402 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEE
Confidence            56788889999999999998888764322345555655431      1   111111  1 11 11111   12356899


Q ss_pred             EEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         111 YESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       111 I~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      |+++ .+|++|++++++ .|+.+.+
T Consensus       403 is~~-~~~~e~i~~~~~-~l~~~l~  425 (428)
T 1iay_A          403 VCFA-NMDDGTVDIALA-RIRRFVG  425 (428)
T ss_dssp             EECS-SSCHHHHHHHHH-HHHHHHH
T ss_pred             EEEe-cCCHHHHHHHHH-HHHHHHh
Confidence            9998 689999999998 7776654

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=95.50  E-value=0.068  Score=43.76  Aligned_cols=89  Identities=9%  Similarity=-0.125  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCC--CCCe---EEEEcCCchHHHhcc----ccc--cCCCCCC--------C-
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHR--DSPV---VPVLVFFFSKVGQTS----IGL--GVEQTAL--------N-  105 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s--~SPI---iPV~~g~~~~~~~~a----~~i--~~PtVP~--------g-  105 (153)
                      ++..++..++..++++.|.+. |+.+...+  ..++   +++...+.....+..    +.+  .+|.+..        | 
T Consensus       274 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~  353 (399)
T 2oga_A          274 DSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAP  353 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCC
Confidence            456777788899999999876 66542211  1233   555544444443332    222  2332110        1 


Q ss_pred             ------------CceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         106 ------------DGLSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       106 ------------~~RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                                  ...+||+++..+|+||++++++ +|+.+.+.
T Consensus       354 ~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~-~l~~~~~~  395 (399)
T 2oga_A          354 PEGSLPRAESFARQVLSLPIGPHLERPQALRVID-AVREWAER  395 (399)
T ss_dssp             CTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHH-HHHHHHHS
T ss_pred             CCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHH-HHHHHHHH
Confidence                        2579999999999999999999 88776543

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=95.44  E-value=0.062  Score=46.23  Aligned_cols=85  Identities=6%  Similarity=-0.075  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEE-cCCch--------------H--HHhcc-------ccccCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVL-VFFFS--------------K--VGQTS-------IGLGVEQ  101 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~-~g~~~--------------~--~~~~a-------~~i~~Pt  101 (153)
                      .+++++++++..++.+.|++. |+.+. .+++.++.++ +..+.              .  +..+.       .+...+.
T Consensus       382 ~~~~~~l~~~~~~l~~~L~~~~g~~~~-~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~  460 (498)
T 3ihj_A          382 ESVLGNLAKKAKLTEDLFNQVPGIHCN-PLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFG  460 (498)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTEECC-CCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcEec-CCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccC
Confidence            456788999999999999987 77653 3555655442 22111              1  12222       2223455


Q ss_pred             CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         102 TALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       102 VP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      ++.|+..+|+++.  +++++++.+++ .|..+.+
T Consensus       461 ~~~~~~~~Ris~~--~~~e~l~~~i~-~L~~~~~  491 (498)
T 3ihj_A          461 QREGTYHFRMTIL--PPVEKLKTVLQ-KVKDFHI  491 (498)
T ss_dssp             CCTTCCBEEEECC--SCHHHHHHHHH-HHHHHHH
T ss_pred             CCCCCCEEEEEeC--CCHHHHHHHHH-HHHHHHH
Confidence            5678889999993  89999999888 7765543

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=95.36  E-value=0.062  Score=46.12  Aligned_cols=89  Identities=11%  Similarity=0.006  Sum_probs=57.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEc-CC-------chH-----------HHhcc--cc---ccCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLV-FF-------FSK-----------VGQTS--IG---LGVE  100 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~-g~-------~~~-----------~~~~a--~~---i~~P  100 (153)
                      ..+..++..++..+|.+.|.+. |+.+.+.+...++.+.. ..       ...           .....  ..   +.++
T Consensus       399 ~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~  478 (515)
T 2jis_A          399 LERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQ  478 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence            3567888999999999999986 77765444445555533 11       111           11111  22   2222


Q ss_pred             CCCCCCceEEEEe-eCCCCHHHHHHHHHHHHHHHHh
Q psy5049         101 QTALNDGLSLYES-SHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       101 tVP~g~~RlRI~l-sA~HT~edId~L~~~~L~~~~~  135 (153)
                      .++.+...+|+++ +..+|++||+++++ +++.+.+
T Consensus       479 ~~~~~~~~lRis~~~~~~t~edid~~~~-~l~~~~~  513 (515)
T 2jis_A          479 PHGTRGNFFRVVVANSALTCADMDFLLN-ELERLGQ  513 (515)
T ss_dssp             EETTEEEEEEEECCCTTCCHHHHHHHHH-HHHHHHT
T ss_pred             EECCceEEEEEEeCCCCCCHHHHHHHHH-HHHHHHh
Confidence            2333346899999 89999999999998 7776543

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=95.33  E-value=0.078  Score=42.82  Aligned_cols=90  Identities=7%  Similarity=-0.123  Sum_probs=57.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCC-----CCCCeEEEEcCCchHHHhcc------ccccCC-CCC----------
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGH-----RDSPVVPVLVFFFSKVGQTS------IGLGVE-QTA----------  103 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~-----s~SPIiPV~~g~~~~~~~~a------~~i~~P-tVP----------  103 (153)
                      .++..++.+++..++++.|.+.|+.+...     ....++++.+.+.+...+..      ..+.|| .+.          
T Consensus       245 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~  324 (367)
T 3nyt_A          245 FEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMDNRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKA  324 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECSSHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCceeccCCCccccChhhhccCC
Confidence            36677888899999999999987654211     11236677766544444433      222344 111          


Q ss_pred             -------CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         104 -------LNDGLSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       104 -------~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                             .....+|+.++...|+|||+++++ +++.++..
T Consensus       325 ~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~-~~~~~~~~  363 (367)
T 3nyt_A          325 KLPVGDKAATQVMSLPMHPYLDTASIKIICA-ALTNLEHH  363 (367)
T ss_dssp             CCHHHHHHHHHEEEECCCTTCCHHHHHHHHH-HHHC----
T ss_pred             CChHHHHHHhCeEEccCCCCCCHHHHHHHHH-HHHHHhhc
Confidence                   114578999999999999999999 88877643

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=95.27  E-value=0.071  Score=43.42  Aligned_cols=88  Identities=5%  Similarity=-0.027  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCC---CCeEEEEcCC--chHHHhcc-ccccCCCC-----------------
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRD---SPVVPVLVFF--FSKVGQTS-IGLGVEQT-----------------  102 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~---SPIiPV~~g~--~~~~~~~a-~~i~~PtV-----------------  102 (153)
                      ++.+++++++..++++.|.+. |+.+.....   ..++.+.+..  .....+.. .....|..                 
T Consensus       283 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~v~~g~~~~~~~~~~~~~~~~~g  362 (423)
T 3lvm_A          283 ATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALG  362 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTTEECBCCCC-----CCCCHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhhheeccCccccCCCccccHHHHHhC
Confidence            677888999999999999887 765543221   2466666632  22222222 11111110                 


Q ss_pred             -C--CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         103 -A--LNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       103 -P--~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                       +  .+...+||+++..+|+||++++++ +|+.+.+
T Consensus       363 ~~~~~~~~~iRi~~~~~~t~e~i~~~~~-~l~~~~~  397 (423)
T 3lvm_A          363 LNDELAHSSIRFSLGRFTTEEEIDYTIE-LVRKSIG  397 (423)
T ss_dssp             CCHHHHHTEEEEECCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             CCccccCceEEEECCCCCCHHHHHHHHH-HHHHHHH
Confidence             0  114789999999999999999999 7766554

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=95.23  E-value=0.043  Score=46.21  Aligned_cols=84  Identities=7%  Similarity=0.032  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC--CCc--c-cCCCCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceEEEEeeC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL--GLI--V-YGHRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~--G~~--~-~~~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      ++..++++++..++++.|.+.  ++.  + ...+...++.+-+.+.....++.      ..+..|.   |...+|++++.
T Consensus       351 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---g~~~iRi~~~~  427 (449)
T 2cjg_A          351 EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTADRDELIRQLWQRAVIVLPA---GADTVRFRPPL  427 (449)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSSHHHHHHHHHHHHHTTEECEEE---TTTEEEECCCT
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECChHHHHHHHHHHHHCCeEEecC---CCCEEEEECCC
Confidence            567899999999999999865  222  1 01244678888776532222222      2223332   56899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~  134 (153)
                      .+|+|||+++++ .|+.+.
T Consensus       428 ~~t~e~i~~~l~-~l~~~l  445 (449)
T 2cjg_A          428 TVSTAEIDAAIA-AVRSAL  445 (449)
T ss_dssp             TCCHHHHHHHHH-HHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHH
Confidence            999999999998 776654

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=95.23  E-value=0.035  Score=45.09  Aligned_cols=83  Identities=12%  Similarity=-0.048  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCccc--CCCCCCeEEEEcCC-chHHHhcc----ccccCCCCCCCCceEEEEeeCCCCH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVY--GHRDSPVVPVLVFF-FSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSA  119 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~--~~s~SPIiPV~~g~-~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~  119 (153)
                      .+.+++++++..++++.|.+.+....  ..+.++++.+.+.+ .....+..    .....|   .+...+||+++..+|+
T Consensus       304 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~---~~~~~iRi~~~~~~~~  380 (395)
T 1vef_A          304 TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQ---AGPTVIRFLPPLVIEK  380 (395)
T ss_dssp             HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEE---SSTTEEEECCCTTCCH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEEEEEEEcChHHHHHHHHHHHCCeEEec---CCCCEEEEeCCCCCCH
Confidence            45788999999999999998875321  12345788887754 22222211    111222   2568899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy5049         120 NLWNRPHSPSLMAV  133 (153)
Q Consensus       120 edId~L~~~~L~~~  133 (153)
                      +|++++++ +|+.+
T Consensus       381 ~~i~~~~~-~l~~~  393 (395)
T 1vef_A          381 EDLERVVE-AVRAV  393 (395)
T ss_dssp             HHHHHHHH-HHHHH
T ss_pred             HHHHHHHH-HHHHH
Confidence            99999988 77654

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=95.21  E-value=0.069  Score=42.91  Aligned_cols=84  Identities=8%  Similarity=-0.057  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC-CchHHHhcc-----ccccCCC---CCCCCceEEEEeeCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF-FFSKVGQTS-----IGLGVEQ---TALNDGLSLYESSHLR  117 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g-~~~~~~~~a-----~~i~~Pt---VP~g~~RlRI~lsA~H  117 (153)
                      ++.+++++++..++.+.|.+.|+.+.......++.+-+. +.....+..     +.+ .|.   -+.+...+||+++  +
T Consensus       276 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v-~~g~~f~~~~~~~~Ri~~~--~  352 (370)
T 2z61_A          276 NSMIKEFDRRRRLVLKYVKDFGWEVNNPIGAYYVFPNIGEDGREFAYKLLKEKFVAL-TPGIGFGSKGKNYIRISYA--N  352 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCBCCCCCBTTEECCBCSSCHHHHHHHHHHHHCEEC-EEGGGGCGGGSSBEEEECC--S
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCeecCCCcceEEEEecCCCHHHHHHHHHHhCCEEE-eCchhhCCCCCCEEEEEEe--C
Confidence            557888999999999999988876643222333333443 222222211     111 111   1124678999999  7


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy5049         118 SANLWNRPHSPSLMAVF  134 (153)
Q Consensus       118 T~edId~L~~~~L~~~~  134 (153)
                      ++++|+++++ .++.+.
T Consensus       353 ~~~~i~~~~~-~l~~~l  368 (370)
T 2z61_A          353 SYENIKEGLE-RIKEFL  368 (370)
T ss_dssp             CHHHHHHHHH-HHHHHH
T ss_pred             CHHHHHHHHH-HHHHHH
Confidence            9999999888 666543

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=95.18  E-value=0.055  Score=42.89  Aligned_cols=82  Identities=16%  Similarity=0.087  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCC----chHHHhcc----ccccCCCCCCCCceEEEEeeCCCCH
Q psy5049          49 RISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFF----FSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSA  119 (153)
Q Consensus        49 rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~----~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~  119 (153)
                      ..++..++..++++.|.+.|+.+. ..+.+.++.+-+.+    .....+..    +.++ |   -+...+|++++..+|+
T Consensus       254 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~-~---~~~~~iRl~~~~~~~~  329 (347)
T 1jg8_A          254 RLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLAN-A---VSDTEIRLVTHKDVSR  329 (347)
T ss_dssp             THHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECE-E---EETTEEEEECCTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHhcCceeccCCCcceEEEEEcccccCCHHHHHHHHHHCCCEEe-c---CCCCeEEEEeCCCCCH
Confidence            344556788999999988777541 23456777776652    22222222    2222 2   2356799999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy5049         120 NLWNRPHSPSLMAVFR  135 (153)
Q Consensus       120 edId~L~~~~L~~~~~  135 (153)
                      ||++++++ +|+.+.+
T Consensus       330 e~i~~~~~-~l~~~l~  344 (347)
T 1jg8_A          330 NDIEEALN-IFEKLFR  344 (347)
T ss_dssp             HHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHH-HHHHHHH
Confidence            99999998 7776543

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=95.12  E-value=0.15  Score=41.08  Aligned_cols=84  Identities=7%  Similarity=-0.108  Sum_probs=52.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC--chHHHh-cc-------ccccCCCC-----CCCCceEE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF--FSKVGQ-TS-------IGLGVEQT-----ALNDGLSL  110 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~--~~~~~~-~a-------~~i~~PtV-----P~g~~RlR  110 (153)
                      ..+.+++++++..++.+.|.+. +.+.....+.++.+-+..  ...... +.       .+..+..+     +.+...+|
T Consensus       296 ~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iR  374 (396)
T 3jtx_A          296 VIDNRRLYQEKFERVIPILQQV-FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVR  374 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTT-SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEE
Confidence            3677888999999999999875 333223335566666653  222221 21       11122232     35678999


Q ss_pred             EEeeCCCCHHHHHHHHHHHHHHH
Q psy5049         111 YESSHLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       111 I~lsA~HT~edId~L~~~~L~~~  133 (153)
                      |+++.  |+++|+++++ .|..+
T Consensus       375 is~~~--~~~~i~~~l~-~l~~~  394 (396)
T 3jtx_A          375 IALVA--DVATCVKAAE-DIVSL  394 (396)
T ss_dssp             EECCS--CHHHHHHHHH-HHHHH
T ss_pred             EEEcC--CHHHHHHHHH-HHHHH
Confidence            99876  9999999887 66543

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=95.12  E-value=0.13  Score=41.55  Aligned_cols=87  Identities=11%  Similarity=0.021  Sum_probs=54.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCC-CCeEEEEcCC----chHHHhc-c----ccc---cCCCCCCCCceEEEE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRD-SPVVPVLVFF----FSKVGQT-S----IGL---GVEQTALNDGLSLYE  112 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~-SPIiPV~~g~----~~~~~~~-a----~~i---~~PtVP~g~~RlRI~  112 (153)
                      ..+.+++++++..++.+.|.+.|+.....+. +..+.+-+..    ....... .    +.+   .....+.+...+||+
T Consensus       281 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis  360 (391)
T 3h14_A          281 LQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFS  360 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEE
Confidence            3677888999999999999988875422222 3444444432    2222221 1    111   222334567899999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      ++.  ++|||+++++ .|..+.+
T Consensus       361 ~~~--~~~~i~~~l~-~l~~~~~  380 (391)
T 3h14_A          361 YAR--ATADIEEGLD-RLEAFMQ  380 (391)
T ss_dssp             CCS--CHHHHHHHHH-HHHHHHH
T ss_pred             ecC--CHHHHHHHHH-HHHHHHH
Confidence            987  8999999998 7765543

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=95.10  E-value=0.25  Score=40.40  Aligned_cols=86  Identities=10%  Similarity=-0.053  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcc-cCCCCCCeEEEEcC--CchHHHhcc--c------cc-cCC------CCCCCCce
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIV-YGHRDSPVVPVLVF--FFSKVGQTS--I------GL-GVE------QTALNDGL  108 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~-~~~s~SPIiPV~~g--~~~~~~~~a--~------~i-~~P------tVP~g~~R  108 (153)
                      ++.+++++++..++.+.|.+.|+.+ .....+.++.+-+.  +.....+..  .      .| ..|      ..+.+...
T Consensus       297 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~  376 (409)
T 2gb3_A          297 DFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKE  376 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCceeeeCCCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCE
Confidence            5668889999999999999888765 43222334443443  222222111  1      22 112      12345788


Q ss_pred             EEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         109 SLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       109 lRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +||+++  +|+|||+++++ .++.+.+
T Consensus       377 iRis~~--~~~e~i~~~~~-~l~~~l~  400 (409)
T 2gb3_A          377 IRIACV--LEKDLLSRAID-VLMEGLK  400 (409)
T ss_dssp             EEEECC--SCHHHHHHHHH-HHHHHHH
T ss_pred             EEEEeC--CCHHHHHHHHH-HHHHHHH
Confidence            999988  99999999998 7765543

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=95.07  E-value=0.02  Score=45.41  Aligned_cols=85  Identities=12%  Similarity=0.010  Sum_probs=55.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC---------------CcccC---CCCCCeEEEEcCCchHHHhcc----c---cc---
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG---------------LIVYG---HRDSPVVPVLVFFFSKVGQTS----I---GL---   97 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G---------------~~~~~---~s~SPIiPV~~g~~~~~~~~a----~---~i---   97 (153)
                      .+++++++.+|+..+.+.+++..               +.+.+   .+.++++.+.+.+.+.+..+.    .   ++   
T Consensus       196 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~~~s~g  275 (331)
T 1pff_A          196 LDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLG  275 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHhCCCceeccCCC
Confidence            35677788889998888887542               11100   124679999887555554443    1   22   


Q ss_pred             ------cCCCCC--------------CCCceEEEEeeCCCCHHHHHHHHHHHHH
Q psy5049          98 ------GVEQTA--------------LNDGLSLYESSHLRSANLWNRPHSPSLM  131 (153)
Q Consensus        98 ------~~PtVP--------------~g~~RlRI~lsA~HT~edId~L~~~~L~  131 (153)
                            .+|+.+              .+.+.+||+++..+|++||+.+++ +++
T Consensus       276 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~-~l~  328 (331)
T 1pff_A          276 GPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQ-ALD  328 (331)
T ss_dssp             SSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHH-HHH
T ss_pred             CcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHH-HHH
Confidence                  233321              125899999999999999999888 665

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=95.06  E-value=0.12  Score=42.03  Aligned_cols=87  Identities=9%  Similarity=-0.107  Sum_probs=55.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC--CCcccCCCCCCeEEEEcCC---chHHHhcc--c-cc-cCCC----C-CCCCceEEE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL--GLIVYGHRDSPVVPVLVFF---FSKVGQTS--I-GL-GVEQ----T-ALNDGLSLY  111 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~--G~~~~~~s~SPIiPV~~g~---~~~~~~~a--~-~i-~~Pt----V-P~g~~RlRI  111 (153)
                      ..+.+++++++..++.+.|.+.  |+.+...+.+.++.+-+.+   .....+..  . .| ..|.    . +.+...+||
T Consensus       301 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRi  380 (407)
T 2zc0_A          301 LEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRL  380 (407)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEE
Confidence            3567888899999999999874  5554333334566666643   22222221  1 22 2221    1 124678999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         112 ESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      +++.. |++|++++++ .|+.+.
T Consensus       381 s~~~~-~~~~i~~~~~-~l~~~l  401 (407)
T 2zc0_A          381 NFSRP-SKEEIPIGIK-KLAKLY  401 (407)
T ss_dssp             ECSSS-CTTHHHHHHH-HHHHHH
T ss_pred             EeCCC-CHHHHHHHHH-HHHHHH
Confidence            99877 9999999998 776544

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=95.05  E-value=0.12  Score=43.53  Aligned_cols=86  Identities=7%  Similarity=-0.118  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC---CCcccCCCCCCeEEEEcCC---chHHHhcc--------ccccCCCCCCCCceEEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL---GLIVYGHRDSPVVPVLVFF---FSKVGQTS--------IGLGVEQTALNDGLSLYE  112 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~---G~~~~~~s~SPIiPV~~g~---~~~~~~~a--------~~i~~PtVP~g~~RlRI~  112 (153)
                      .+.++.++++..++.+.|.+.   |+.+.....+..+.+-+.+   .......+        .+..|...+.+...+|++
T Consensus       343 ~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls  422 (448)
T 3aow_A          343 PEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLN  422 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTTCCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCCCCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEE
Confidence            456777788999999999875   6654333335666666653   22222221        111232223456789999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHH
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~  134 (153)
                      ++. .|+|||+..++ .|..+.
T Consensus       423 ~~~-~~~e~i~~~~~-~L~~~l  442 (448)
T 3aow_A          423 FTY-VDEDKIMEGIK-RLAETI  442 (448)
T ss_dssp             CSS-SCTHHHHHHHH-HHHHHH
T ss_pred             eCC-CCHHHHHHHHH-HHHHHH
Confidence            987 49999999888 776543

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=95.02  E-value=0.11  Score=43.17  Aligned_cols=88  Identities=9%  Similarity=0.040  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC------CchH------HHhc-c---ccc---c--C-C----
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF------FFSK------VGQT-S---IGL---G--V-E----  100 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g------~~~~------~~~~-a---~~i---~--~-P----  100 (153)
                      ++..++..++..++++.|.+.|+.+.....+..+.+.+.      +...      +..+ .   +.+   .  | |    
T Consensus       312 ~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~  391 (456)
T 2ez2_A          312 YEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNV  391 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCcc
Confidence            467778888999999999988886543344666666542      1111      1111 0   111   1  1 1    


Q ss_pred             ---CCCCCCceEEEEeeCC-CCHHHHHHHHHHHHHHHHh
Q psy5049         101 ---QTALNDGLSLYESSHL-RSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       101 ---tVP~g~~RlRI~lsA~-HT~edId~L~~~~L~~~~~  135 (153)
                         ..+.+...+||+++.. +|++||+++++ +|+.+.+
T Consensus       392 ~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~-~l~~~l~  429 (456)
T 2ez2_A          392 TGEHHRPKLETVRLTIPRRVYTYAHMDVVAD-GIIKLYQ  429 (456)
T ss_dssp             TCSBCCCSCCEEEEECCTTTCCHHHHHHHHH-HHHHHHH
T ss_pred             ccccccCCCCeEEEEeCCCCCCHHHHHHHHH-HHHHHHh
Confidence               1233457899999987 99999999999 8876654

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=94.98  E-value=0.095  Score=42.28  Aligned_cols=86  Identities=9%  Similarity=0.039  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC-eEEEEcC----CchHHHhcc----ccccCCCC---CCCCceEEEEee
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSP-VVPVLVF----FFSKVGQTS----IGLGVEQT---ALNDGLSLYESS  114 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SP-IiPV~~g----~~~~~~~~a----~~i~~PtV---P~g~~RlRI~ls  114 (153)
                      ++.+++++++..++.+.|.+.|+.+.. ++.. .+.+-+.    +.....+..    .....|..   +.+...+||+++
T Consensus       288 ~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~  366 (389)
T 1gd9_A          288 EEMRKEYDRRRKLVWKRLNEMGLPTVK-PKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA  366 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCC-CCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCeecC-CCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec
Confidence            567888999999999999988887643 3333 3333332    222222211    11111211   234678999998


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhc
Q psy5049         115 HLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~~  136 (153)
                      .  ++++|+.+++ .+..+.+.
T Consensus       367 ~--~~~~i~~~l~-~l~~~~~~  385 (389)
T 1gd9_A          367 T--AYEKLEEAMD-RMERVLKE  385 (389)
T ss_dssp             S--CHHHHHHHHH-HHHHHHHH
T ss_pred             C--CHHHHHHHHH-HHHHHHHh
Confidence            5  9999999988 77665543

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=94.95  E-value=0.07  Score=45.51  Aligned_cols=90  Identities=8%  Similarity=-0.123  Sum_probs=57.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccC--CCCCCeEEEEc-CCc------------------hHHHhcc----ccccC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYG--HRDSPVVPVLV-FFF------------------SKVGQTS----IGLGV   99 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~s~SPIiPV~~-g~~------------------~~~~~~a----~~i~~   99 (153)
                      ..++.++..++..+|.+.|.+. |+.+..  .+...++.+.. +..                  ....+..    ..+..
T Consensus       384 ~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~  463 (504)
T 2okj_A          384 FENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG  463 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEE
Confidence            3567788999999999999986 777653  24455655543 211                  0111111    12222


Q ss_pred             CCCCCCC-ceEEEEee-CCCCHHHHHHHHHHHHHHHHhc
Q psy5049         100 EQTALND-GLSLYESS-HLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       100 PtVP~g~-~RlRI~ls-A~HT~edId~L~~~~L~~~~~~  136 (153)
                      ++...|. ..+|++++ ..+|++||+++++ +++.+.+.
T Consensus       464 ~~~~~~~~~~lRis~~~~~~t~edi~~~~~-~l~~~~~~  501 (504)
T 2okj_A          464 YQPQGDKANFFRMVISNPAATQSDIDFLIE-EIERLGQD  501 (504)
T ss_dssp             EEEETTEEEEEEECCCCTTCCHHHHHHHHH-HHHHHHTC
T ss_pred             eeEECCceEEEEEEeCCCCCCHHHHHHHHH-HHHHHHHH
Confidence            2322343 58999996 8999999999998 77766543

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=94.94  E-value=0.16  Score=40.70  Aligned_cols=83  Identities=12%  Similarity=-0.033  Sum_probs=54.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-----ccc---cCCCC-CCCCceEEEEeeCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS-----IGL---GVEQT-ALNDGLSLYESSHL  116 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a-----~~i---~~PtV-P~g~~RlRI~lsA~  116 (153)
                      ..+.+++++++..++.+.|+  |+..  .+.+.++.+-+.+........     +.+   .+..+ +.+...+||+++. 
T Consensus       282 ~~~~~~~~~~~~~~l~~~l~--~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-  356 (376)
T 3ezs_A          282 AEFFRNIYANNLKLARKIFK--NTLI--YPYSFYVYLPVQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-  356 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHST--TCCC--CSBSSEEEEECSCHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-
T ss_pred             HHHHHHHHHHHHHHHHHHhc--CCCC--CCcceEEEEECCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-
Confidence            36778888888888888887  6642  344566666665433332221     111   12222 4567899999874 


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q psy5049         117 RSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       117 HT~edId~L~~~~L~~~~~  135 (153)
                       |++||+++++ .|..+.+
T Consensus       357 -~~~~i~~~l~-~l~~~l~  373 (376)
T 3ezs_A          357 -DTPLLEKPLE-IIETYRE  373 (376)
T ss_dssp             -CHHHHHHHHH-HHHHHHC
T ss_pred             -CHHHHHHHHH-HHHHHHH
Confidence             9999999988 7776543

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=94.87  E-value=0.11  Score=41.94  Aligned_cols=82  Identities=15%  Similarity=0.021  Sum_probs=51.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC--CcccCCCCCCeEEEEcCCchHHHhcc----ccccC-CCCCCCCceEEEEeeCCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG--LIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGV-EQTALNDGLSLYESSHLRS  118 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G--~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~-PtVP~g~~RlRI~lsA~HT  118 (153)
                      .++.+++++++..++.+.|.+.|  +.+ ..+.+..+.+-+.+.....+..    +.+++ -..+.....+||+++   +
T Consensus       265 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~  340 (356)
T 1fg7_A          265 MRERVAQIIAEREYLIAALKEIPCVEQV-FDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---T  340 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTEEEE-CCCSSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---C
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceEE-CCCCCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---C
Confidence            45677888899999999999887  333 2355667666665433333322    22332 111111357999986   6


Q ss_pred             HHHHHHHHHHHHHH
Q psy5049         119 ANLWNRPHSPSLMA  132 (153)
Q Consensus       119 ~edId~L~~~~L~~  132 (153)
                      ++|++++++ +|+.
T Consensus       341 ~~e~~~~~~-~l~~  353 (356)
T 1fg7_A          341 REESQRVID-ALRA  353 (356)
T ss_dssp             HHHHHHHHH-HHHT
T ss_pred             HHHHHHHHH-HHHh
Confidence            899999888 6653

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=94.83  E-value=0.078  Score=44.37  Aligned_cols=85  Identities=9%  Similarity=-0.029  Sum_probs=55.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccC--CCCCCeEEEEcCCchH-----------HHhcc------ccccCCCCCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYG--HRDSPVVPVLVFFFSK-----------VGQTS------IGLGVEQTALN  105 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~s~SPIiPV~~g~~~~-----------~~~~a------~~i~~PtVP~g  105 (153)
                      .+++.++++++..++++.|.+. ++....  .+...++.+.+.++..           +.+++      ..+..|.   |
T Consensus       337 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---~  413 (448)
T 3dod_A          337 SENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL---G  413 (448)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE---T
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc---C
Confidence            4678999999999999999873 221111  1235677777755311           12222      2223333   3


Q ss_pred             CceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         106 DGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       106 ~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                       ..+||+++..+|+|||+++++ +|+.+.+
T Consensus       414 -~~iRi~~~~~~t~e~i~~~l~-~l~~~l~  441 (448)
T 3dod_A          414 -DVIAFLPPLASTAEELSEMVA-IMKQAIH  441 (448)
T ss_dssp             -TEEEECCCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             -CEEEEECCCCCCHHHHHHHHH-HHHHHHH
Confidence             899999999999999999998 7765543

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=94.81  E-value=0.097  Score=42.85  Aligned_cols=91  Identities=12%  Similarity=-0.004  Sum_probs=56.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCC-----CCCCeEEEEcCCc------------------------hHHHhcc-
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGH-----RDSPVVPVLVFFF------------------------SKVGQTS-   94 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~-----s~SPIiPV~~g~~------------------------~~~~~~a-   94 (153)
                      ..++.+++++++..++++.|.+. +.+.+.     +..+++++.+.++                        ....+.. 
T Consensus       244 ~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  322 (394)
T 1o69_A          244 VLEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLK  322 (394)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHH
Confidence            34668899999999999999887 544332     1234788877632                        1222221 


Q ss_pred             ---ccc---c-----CCCCCC----C--------CceEEEEeeCCCCHHHHHHHHHHHHHHHHhcC
Q psy5049          95 ---IGL---G-----VEQTAL----N--------DGLSLYESSHLRSANLWNRPHSPSLMAVFRGG  137 (153)
Q Consensus        95 ---~~i---~-----~PtVP~----g--------~~RlRI~lsA~HT~edId~L~~~~L~~~~~~~  137 (153)
                         +.+   .     .|....    +        ...+|+..+..+|+||++++++ +|+.+.+.+
T Consensus       323 ~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~-~l~~~~~~~  387 (394)
T 1o69_A          323 NKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISK-LILKSIKAG  387 (394)
T ss_dssp             HTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHH-HHHHHHC--
T ss_pred             HcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHH-HHHHHHhcc
Confidence               111   1     122221    1        0346666799999999999999 888776654

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=94.77  E-value=0.19  Score=41.12  Aligned_cols=86  Identities=10%  Similarity=-0.006  Sum_probs=55.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCC-CCeEEEEcCC------chHHHhcc----ccccCCC---CCCCCceEEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRD-SPVVPVLVFF------FSKVGQTS----IGLGVEQ---TALNDGLSLYE  112 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~-SPIiPV~~g~------~~~~~~~a----~~i~~Pt---VP~g~~RlRI~  112 (153)
                      ++.+++++++..++.+.|.+.|+.+.. +. +.++.+-+.+      ........    .....|.   .+.+...+||+
T Consensus       298 ~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis  376 (412)
T 2x5d_A          298 RDIARQYQQRRDVLVKGLREAGWMVEN-PKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFA  376 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCC-CSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEecC-CCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEE
Confidence            667888999999999999988877643 33 3356565642      22222211    1111111   12356789999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                      ++.  ++++|+.+++ .+..+.+.
T Consensus       377 ~~~--~~~~l~~~l~-~l~~~l~~  397 (412)
T 2x5d_A          377 LIE--NRDRLRQAVR-GIKAMFRA  397 (412)
T ss_dssp             CCS--CHHHHHHHHH-HHHHHHHH
T ss_pred             ecC--CHHHHHHHHH-HHHHHHHh
Confidence            986  8999999998 77665544

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=94.77  E-value=0.11  Score=43.05  Aligned_cols=87  Identities=9%  Similarity=-0.086  Sum_probs=54.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcC--------CchHHH-hcc----ccccCCCCCCCCceEEE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVF--------FFSKVG-QTS----IGLGVEQTALNDGLSLY  111 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g--------~~~~~~-~~a----~~i~~PtVP~g~~RlRI  111 (153)
                      ..+.++++.++..++.+.|++. |+.+.....+..+.+-+.        +..... .+.    +.+.+-........+||
T Consensus       322 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRi  401 (427)
T 3dyd_A          322 YHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRV  401 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEE
Confidence            3677888999999999999987 765433344555555443        112222 221    22222122223578999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         112 ESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +++  +++++|+++++ .|..+.+
T Consensus       402 s~~--~~~e~i~~~l~-~l~~~l~  422 (427)
T 3dyd_A          402 VIT--VPEVMMLEACS-RIQEFCE  422 (427)
T ss_dssp             ESC--SCHHHHHHHHH-HHHHHHH
T ss_pred             EEC--CCHHHHHHHHH-HHHHHHH
Confidence            986  79999999988 7765544

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=94.76  E-value=0.057  Score=44.16  Aligned_cols=87  Identities=15%  Similarity=0.062  Sum_probs=55.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE-cCC---chHHHh-cc---ccccCCC---CCCCCceEEEEe
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL-VFF---FSKVGQ-TS---IGLGVEQ---TALNDGLSLYES  113 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~-~g~---~~~~~~-~a---~~i~~Pt---VP~g~~RlRI~l  113 (153)
                      ..++.+++++++..++.+.|.+.|+.+.+...++++.+- +.+   ...... +.   .....|.   -+.+...+||++
T Consensus       293 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~  372 (400)
T 3asa_A          293 PQLEAIHYYRENSDLLRKALLATGFEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSS  372 (400)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTCEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEe
Confidence            356788999999999999999988876433346777766 542   112221 11   1111111   133567899994


Q ss_pred             eCCCCHHHHHHHHHHHHHHHH
Q psy5049         114 SHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~  134 (153)
                        .+|+|+++++++ .|+.+.
T Consensus       373 --~~~~e~i~~~l~-~l~~~~  390 (400)
T 3asa_A          373 --LGKREDILAACE-RLQMAP  390 (400)
T ss_dssp             --CSCHHHHHHHHH-HHHC--
T ss_pred             --eCCHHHHHHHHH-HHHHHH
Confidence              689999999887 665443

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=94.72  E-value=0.18  Score=40.28  Aligned_cols=85  Identities=12%  Similarity=-0.022  Sum_probs=53.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC--CCcccCCCCCCeEE-EEcCC----chHHHhcc-----ccccCCC---CCCCCceEE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL--GLIVYGHRDSPVVP-VLVFF----FSKVGQTS-----IGLGVEQ---TALNDGLSL  110 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~--G~~~~~~s~SPIiP-V~~g~----~~~~~~~a-----~~i~~Pt---VP~g~~RlR  110 (153)
                      .++++++++++..++.+.|.+.  |+.+.. +....+. +-+..    .....+..     +.++ |.   -+.+...+|
T Consensus       288 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~-~g~~~~~~~~~~iR  365 (391)
T 3dzz_A          288 LRELKQVLRDNFAYAREFLAKEVPEVKVLD-SNASYLAWVDISALGMNAEDFCKYLREKTGLIIS-AGNGYRGNGHEFVR  365 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTSEECC-CCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECE-ESGGGCTTGGGEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCcEEec-cCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEe-CchhhCCCCCCEEE
Confidence            4678889999999999999985  776643 3334333 33332    22222211     2221 11   123568999


Q ss_pred             EEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         111 YESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       111 I~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      |+++  +++++++++++ .|..+.+
T Consensus       366 is~~--~~~~~i~~~l~-~l~~~l~  387 (391)
T 3dzz_A          366 INLA--CPKELVIDGMQ-RLKQGVL  387 (391)
T ss_dssp             EECC--SCHHHHHHHHH-HHHHHHH
T ss_pred             EEec--CCHHHHHHHHH-HHHHHHH
Confidence            9998  79999999988 7766554

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=94.61  E-value=0.25  Score=40.11  Aligned_cols=82  Identities=9%  Similarity=0.068  Sum_probs=52.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC-CchHHHhcc-----ccc----cCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF-FFSKVGQTS-----IGL----GVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g-~~~~~~~~a-----~~i----~~PtVP~g~~RlRI~lsA  115 (153)
                      .++.+++++++..++.+.|.+.|+.+.......++.+-+. +.....+..     +.+    .|..    ...+||+++.
T Consensus       295 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~----~~~~Ris~~~  370 (389)
T 1o4s_A          295 NSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLK----PGFVRLSFAT  370 (389)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTC----TTEEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCeeecCCcceEEEEeCCCCHHHHHHHHHHHCCEEEeCchhcCC----CCeEEEEEeC
Confidence            5788999999999999999998887643222334444443 333332211     111    2221    2489999984


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~  134 (153)
                        |+++|+.+++ .+..+.
T Consensus       371 --~~~~l~~~l~-~l~~~l  386 (389)
T 1o4s_A          371 --SIERLTEALD-RIEDFL  386 (389)
T ss_dssp             --CHHHHHHHHH-HHHHHH
T ss_pred             --CHHHHHHHHH-HHHHHH
Confidence              9999999888 666543

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=94.50  E-value=0.072  Score=45.27  Aligned_cols=86  Identities=8%  Similarity=-0.120  Sum_probs=58.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC-Cccc--CCCCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceEEEEeeCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG-LIVY--GHRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G-~~~~--~~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI~lsA~  116 (153)
                      .++.+++++++..++++.|.+++ +...  ..+...++.|.+.++..+.++.      ..+..|.    ...+||+.+..
T Consensus       358 ~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~~~~~~~~~~~~l~~~Gv~v~~~----~~~lRi~p~~~  433 (457)
T 3tfu_A          358 GQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPF----RNLVYAMPPYI  433 (457)
T ss_dssp             TSCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEESSCCCHHHHHHHHHHTTEECCCB----TTEEEECCCTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEECCcccHHHHHHHHHHCCeEEEec----CCEEEEECCCC
Confidence            45789999999999999998763 2111  1134678888776542222222      2222232    36899999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhc
Q psy5049         117 RSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       117 HT~edId~L~~~~L~~~~~~  136 (153)
                      +|+||++++++ +|+.+.+.
T Consensus       434 ~t~eei~~~l~-~L~~~l~~  452 (457)
T 3tfu_A          434 CTPAEITQITS-AMVEVARL  452 (457)
T ss_dssp             CCHHHHHHHHH-HHHHHHHH
T ss_pred             CCHHHHHHHHH-HHHHHHHH
Confidence            99999999999 88766554

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=94.49  E-value=0.13  Score=42.24  Aligned_cols=84  Identities=8%  Similarity=-0.014  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc---------------hHHHh-cc----ccc----cCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF---------------SKVGQ-TS----IGL----GVEQT  102 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~---------------~~~~~-~a----~~i----~~PtV  102 (153)
                      .+.+++++++..++.+.|.+.|+.+.....+.++.+-+.+.               ..... +.    +.+    .|...
T Consensus       315 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~  394 (429)
T 1yiz_A          315 NSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSE  394 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCG
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCC
Confidence            56778888999999999998888764333355777766532               11221 11    111    22221


Q ss_pred             C---CCCceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049         103 A---LNDGLSLYESSHLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       103 P---~g~~RlRI~lsA~HT~edId~L~~~~L~~~  133 (153)
                      +   .+...+||++.  +++++|+++++ .|+.+
T Consensus       395 ~~~~~~~~~iRis~~--~~~e~i~~~l~-~l~~~  425 (429)
T 1yiz_A          395 PNKHLGEDFVRYCFF--KKDENLQKAAE-ILRKW  425 (429)
T ss_dssp             GGGGGTTTEEEEECC--SCHHHHHHHHH-HHHHH
T ss_pred             cccCCCCCeEEEEec--CCHHHHHHHHH-HHHHh
Confidence            1   13678999997  49999999888 66654

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=94.44  E-value=0.11  Score=43.79  Aligned_cols=82  Identities=7%  Similarity=-0.036  Sum_probs=55.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEc--CCc-hHHHhcc--cc-----cc----------CCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLV--FFF-SKVGQTS--IG-----LG----------VEQ  101 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~--g~~-~~~~~~a--~~-----i~----------~Pt  101 (153)
                      ..++++++.++..++.+.|.+.    |+.+.. ++ +++.+-+  .+. ....+..  ..     +.          ++.
T Consensus       348 ~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~-~~-~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~  425 (456)
T 2z67_A          348 YLELVKNQKNSKKLLDELLNDLSKKTGGKFLD-VE-SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGT  425 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCC-CC-CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccCCEecC-CC-CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCccccccccc
Confidence            4677899999999999999987    876643 44 7777766  332 2222211  11     11          111


Q ss_pred             CCCCCceEEEEeeCCCCHHHHHHHHHHHHHH
Q psy5049         102 TALNDGLSLYESSHLRSANLWNRPHSPSLMA  132 (153)
Q Consensus       102 VP~g~~RlRI~lsA~HT~edId~L~~~~L~~  132 (153)
                      .|  .+-+|++.+-.+|+||||++++ +|+.
T Consensus       426 ~~--~~~vr~s~~~~~t~eeid~~l~-~L~~  453 (456)
T 2z67_A          426 YT--HDYIVMNAAIGVRTEDIVNSVS-KLEK  453 (456)
T ss_dssp             CS--CCEEEEECCTTCCHHHHHHHHH-HHHT
T ss_pred             cC--cchhhhhhhcCCCHHHHHHHHH-HHHH
Confidence            12  3689999999999999999888 6654

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=94.39  E-value=0.089  Score=44.29  Aligned_cols=88  Identities=10%  Similarity=0.029  Sum_probs=56.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCC-------chHHHhcc------ccccCCCCCCCCce
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFF-------FSKVGQTS------IGLGVEQTALNDGL  108 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~-------~~~~~~~a------~~i~~PtVP~g~~R  108 (153)
                      .++.+++++++..++++.|.+.    +......+...++.+.+.+       ...+..+.      ..+..|.-+ ....
T Consensus       345 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~  423 (451)
T 3oks_A          345 SEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGT-YGNV  423 (451)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECT-TSCE
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCC-CCCE
Confidence            3578899999999999999864    2111112335677776632       22222222      222233312 2378


Q ss_pred             EEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         109 SLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       109 lRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +||+++..+|+|||+++++ .|+.+.+
T Consensus       424 iRi~~~~~~t~e~i~~~l~-~l~~~l~  449 (451)
T 3oks_A          424 VRFLPPLSIGDDLLNEGLD-VLEEVLR  449 (451)
T ss_dssp             EEECCCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH-HHHHHHh
Confidence            9999999999999999998 7776543

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=94.37  E-value=0.13  Score=42.02  Aligned_cols=85  Identities=7%  Similarity=0.015  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC-----chHHHh-cc----ccc----cC-CCC--------C
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF-----FSKVGQ-TS----IGL----GV-EQT--------A  103 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~-----~~~~~~-~a----~~i----~~-PtV--------P  103 (153)
                      ++.++++.++..++.+.|.+.|+.+.......++.+-+.+     .....+ +.    +.+    .| +..        +
T Consensus       286 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~  365 (411)
T 2o0r_A          286 AALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQAD  365 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCEECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------C
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCEecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCcccccccccc
Confidence            5678889999999999999888876432223366665543     222222 11    111    22 221        1


Q ss_pred             CCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         104 LNDGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       104 ~g~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      .+...+||++.  +++|||+++++ .|+.+.
T Consensus       366 ~~~~~iRis~~--~~~e~i~~~~~-~l~~~~  393 (411)
T 2o0r_A          366 VWNHLVRFTFC--KRDDTLDEAIR-RLSVLA  393 (411)
T ss_dssp             CGGGCEEEECC--SCHHHHHHHHH-HHGGGG
T ss_pred             CCCCeEEEEec--CCHHHHHHHHH-HHHHHH
Confidence            15678999986  49999999888 665543

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=94.36  E-value=0.084  Score=43.52  Aligned_cols=87  Identities=11%  Similarity=-0.160  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc--------hHHHhcc------ccccCCCCCC-CCc
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF--------SKVGQTS------IGLGVEQTAL-NDG  107 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~--------~~~~~~a------~~i~~PtVP~-g~~  107 (153)
                      ++..++++++..++++.|++.    +......+...++.+.+.+.        ....++.      ..+..|.-+. +..
T Consensus       324 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~  403 (433)
T 1zod_A          324 DGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGG  403 (433)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCC
Confidence            467899999999999999874    22111123456777765431        1122222      2223333222 247


Q ss_pred             eEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         108 LSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       108 RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      .+||+++..+|++|++++++ .|+.+.
T Consensus       404 ~lRi~~~~~~t~~~i~~~l~-~l~~~l  429 (433)
T 1zod_A          404 VFRIAPPLTVSEDEIDLGLS-LLGQAI  429 (433)
T ss_dssp             EEEECCCTTCCHHHHHHHHH-HHHHHH
T ss_pred             EEEEECCcCCCHHHHHHHHH-HHHHHH
Confidence            89999999999999999998 776554

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=94.31  E-value=0.14  Score=42.56  Aligned_cols=86  Identities=9%  Similarity=-0.022  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC------CchH------HHhc-c---ccccC---------C--
Q psy5049          48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF------FFSK------VGQT-S---IGLGV---------E--  100 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g------~~~~------~~~~-a---~~i~~---------P--  100 (153)
                      +..++..++..++++.|.+.|+.+. ...+.++.+-+.      +...      +..+ .   +.+.+         |  
T Consensus       325 ~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~  403 (467)
T 2oqx_A          325 DWLAYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKT  403 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCeee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccc
Confidence            4566778999999999998887654 334566666652      1111      2222 1   11111         1  


Q ss_pred             --CCCCCCceEEEEeeCC-CCHHHHHHHHHHHHHHHHh
Q psy5049         101 --QTALNDGLSLYESSHL-RSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       101 --tVP~g~~RlRI~lsA~-HT~edId~L~~~~L~~~~~  135 (153)
                        .++.+...+|++++.. +|++||+++++ .|+.+.+
T Consensus       404 g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~-~l~~~l~  440 (467)
T 2oqx_A          404 GKQLPCPAELLRLTIPRATYTQTHMDFIIE-AFKHVKE  440 (467)
T ss_dssp             CSBCCCSCCEEEECCCTTTSCHHHHHHHHH-HHHHHHH
T ss_pred             cccccCccCeEEEEecCCCCCHHHHHHHHH-HHHHHHh
Confidence              2334467999999999 99999999998 7776554

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=94.31  E-value=0.12  Score=41.73  Aligned_cols=86  Identities=7%  Similarity=0.033  Sum_probs=57.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcc--c--CCCCCCeEEEEcCCc-----hHHHhcc----ccccCCCCCCCCceEEE
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIV--Y--GHRDSPVVPVLVFFF-----SKVGQTS----IGLGVEQTALNDGLSLY  111 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~--~--~~s~SPIiPV~~g~~-----~~~~~~a----~~i~~PtVP~g~~RlRI  111 (153)
                      ..++.+++++++..++++.|++.+...  .  ..+...++.+.+.+.     .......    ..+. |   .+...+|+
T Consensus       300 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~-~---~~~~~iRi  375 (406)
T 4adb_A          300 NTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVL-I---AGGNVVRF  375 (406)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECE-E---SSTTEEEE
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEe-e---cCCCeEEE
Confidence            347889999999999999998764211  0  012356777777652     2222222    2222 2   34789999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         112 ESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +++..+|+||++++++ .|+.+.+
T Consensus       376 ~~~~~~~~e~i~~~~~-~l~~~l~  398 (406)
T 4adb_A          376 APALNVSEEEVTTGLD-RFAAACE  398 (406)
T ss_dssp             CCCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH-HHHHHHH
Confidence            9999999999999998 7765543

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=94.29  E-value=0.24  Score=39.66  Aligned_cols=83  Identities=18%  Similarity=0.076  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCc-hHHHhcc----ccc----cCCCCCCCCceEEEEeeCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFF-SKVGQTS----IGL----GVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~-~~~~~~a----~~i----~~PtVP~g~~RlRI~lsA~  116 (153)
                      ++.+++++++..++.+.|.+. |+.+. .+.++.+.+-+.++ ....+..    +.+    .|+  +.+...+||+++  
T Consensus       267 ~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~g~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~--~~~~~~iRis~~--  341 (364)
T 1lc5_A          267 QATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCEREDIDLQRRLLTQRILIRSCANYP--GLDSRYYRVAIR--  341 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESCTTCCHHHHHHTTTEECEECTTST--TCCTTEEEEECC--
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCEEC-CCCCeEEEEECCCcHHHHHHHHHHCCcEEeeCcccC--CCCCCEEEEEeC--
Confidence            567778889999999999987 76653 35567777666532 1222221    111    232  234678999975  


Q ss_pred             CCHHHHHHHHHHHHHHHHhc
Q psy5049         117 RSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       117 HT~edId~L~~~~L~~~~~~  136 (153)
                       +++|++++++ +++.+.+.
T Consensus       342 -~~~~~~~l~~-~l~~~~~~  359 (364)
T 1lc5_A          342 -SAAQNERLLA-ALRNVLTG  359 (364)
T ss_dssp             -CHHHHHHHHH-HHHHHC--
T ss_pred             -CHHHHHHHHH-HHHHHhhc
Confidence             6899999998 88776543

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=94.28  E-value=0.091  Score=42.93  Aligned_cols=87  Identities=3%  Similarity=-0.137  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCC--Cccc--CCCCCCeEEEEcCC--------chHHHhcc------ccccCCCCCCCCce
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLG--LIVY--GHRDSPVVPVLVFF--------FSKVGQTS------IGLGVEQTALNDGL  108 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G--~~~~--~~s~SPIiPV~~g~--------~~~~~~~a------~~i~~PtVP~g~~R  108 (153)
                      .+..++++++..++++.|.+.+  +...  ..+.+.++.+-+..        .....++.      .....|.-. ....
T Consensus       318 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-~~~~  396 (426)
T 1sff_A          318 ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP-YYNV  396 (426)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST-TSCE
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCC-CCCE
Confidence            4578899999999999998753  3211  11346777777732        11222222      222233211 2578


Q ss_pred             EEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         109 SLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       109 lRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +||+++..+|++|++++++ +|+.+.+
T Consensus       397 iRi~~~~~~~~~~i~~~~~-~l~~~l~  422 (426)
T 1sff_A          397 LRILVPLTIEDAQIRQGLE-IISQCFD  422 (426)
T ss_dssp             EEECCCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             EEEECCccCCHHHHHHHHH-HHHHHHH
Confidence            9999999999999999998 7766543

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=94.19  E-value=0.12  Score=43.38  Aligned_cols=86  Identities=12%  Similarity=-0.039  Sum_probs=54.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-----CCcccC-CCCCCeEEEEcCCc----hHHHhcc----c-------cc--cCCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-----GLIVYG-HRDSPVVPVLVFFF----SKVGQTS----I-------GL--GVEQT  102 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-----G~~~~~-~s~SPIiPV~~g~~----~~~~~~a----~-------~i--~~PtV  102 (153)
                      .+++++++.++..++.+.|.+.     |+.+.. .++++.+.+-+...    ..+....    .       ++  .+|.+
T Consensus       300 ~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~  379 (447)
T 3h7f_A          300 FADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMV  379 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCC
Confidence            3568899999999999999988     887632 24577777766432    2222222    1       22  34444


Q ss_pred             CCCCceEEEEeeCC----CCHHHHHHHHHHHHHHHHh
Q psy5049         103 ALNDGLSLYESSHL----RSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       103 P~g~~RlRI~lsA~----HT~edId~L~~~~L~~~~~  135 (153)
                      |   ..+||+..+.    .|++|++++++ +++.+..
T Consensus       380 ~---~~lRig~~~~~~~~~~~eei~~~~~-~l~~~l~  412 (447)
T 3h7f_A          380 T---SGLRIGTPALATRGFGDTEFTEVAD-IIATALA  412 (447)
T ss_dssp             ----CEEEEECHHHHHHTCCHHHHHHHHH-HHHHHHH
T ss_pred             C---CceeccCHHHhhCCCCHHHHHHHHH-HHHHHHh
Confidence            4   5599987554    78999999999 7766543

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=94.15  E-value=0.27  Score=39.15  Aligned_cols=86  Identities=6%  Similarity=-0.009  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC--CCcccCCCCCCeEEEEcCCc---hH-HHhcc---ccccCCCC---CCCCceEEEEee
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL--GLIVYGHRDSPVVPVLVFFF---SK-VGQTS---IGLGVEQT---ALNDGLSLYESS  114 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~--G~~~~~~s~SPIiPV~~g~~---~~-~~~~a---~~i~~PtV---P~g~~RlRI~ls  114 (153)
                      .+++++++++..++.+.|++.  |+.+.......++.+-+.+.   .. +..+.   .....|.-   +.+...+||+++
T Consensus       277 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~  356 (377)
T 3fdb_A          277 NQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA  356 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC
Confidence            677889999999999999985  77664323233334544431   11 22211   11111111   125689999998


Q ss_pred             CCCCHHHHHHHHHHHHHHHHh
Q psy5049         115 HLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~  135 (153)
                      .  ++|+|++.++ .++.+.+
T Consensus       357 ~--~~e~i~~~l~-~l~~~l~  374 (377)
T 3fdb_A          357 T--SREVLEEAID-RMAKAVS  374 (377)
T ss_dssp             S--CHHHHHHHHH-HHHHHHT
T ss_pred             C--CHHHHHHHHH-HHHHHHh
Confidence            5  8999999888 7765543

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=94.13  E-value=0.086  Score=43.62  Aligned_cols=81  Identities=10%  Similarity=-0.132  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc-hHHH--hcc---ccccCCCCCCCCceEEEEeeCCCCHHHH
Q psy5049          49 RISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF-SKVG--QTS---IGLGVEQTALNDGLSLYESSHLRSANLW  122 (153)
Q Consensus        49 rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~-~~~~--~~a---~~i~~PtVP~g~~RlRI~lsA~HT~edI  122 (153)
                      .+++++++..+|++.|.+. +... .+...++.+-+... ....  ...   ..+..|.   +...+||+++..+|+||+
T Consensus       330 ~~~~~~~~~~~l~~~L~~~-~~~~-~~~g~~~~i~~~~~~~~~~~~~~l~~~Gv~v~~~---~~~~lRis~~~~~t~e~i  404 (419)
T 2eo5_A          330 LLPHVNEIGKIFAEELQGL-ADDV-RGIGLAWGLEYNEKKVRDRIIGESFKRGLLLLPA---GRSAIRVIPPLVISEEEA  404 (419)
T ss_dssp             HHHHHHHHHHHHHHHHTTS-SSEE-EEETTEEEEECSCHHHHHHHHHHHHHTTEECEEE---TTTEEEECCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh-hhhe-EeeeEEEEEEEecCccHHHHHHHHHHCCCEEecC---CCCEEEEECCCCCCHHHH
Confidence            7889999999999999876 3221 34567887776321 1122  111   1222232   357899999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy5049         123 NRPHSPSLMAVFR  135 (153)
Q Consensus       123 d~L~~~~L~~~~~  135 (153)
                      +++++ +|+.+.+
T Consensus       405 ~~~l~-~l~~~l~  416 (419)
T 2eo5_A          405 KQGLD-ILKKVIK  416 (419)
T ss_dssp             HHHHH-HHHHHHH
T ss_pred             HHHHH-HHHHHHH
Confidence            99998 7776543

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=94.13  E-value=0.34  Score=38.70  Aligned_cols=84  Identities=8%  Similarity=-0.055  Sum_probs=52.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC--CCcccCCCCCCeEE-EEcCC----chHHHhcc--c-cc-cCCC---CCCCCceEEE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL--GLIVYGHRDSPVVP-VLVFF----FSKVGQTS--I-GL-GVEQ---TALNDGLSLY  111 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~--G~~~~~~s~SPIiP-V~~g~----~~~~~~~a--~-~i-~~Pt---VP~g~~RlRI  111 (153)
                      .++++++++++..++.+.|.+.  |+.+.. +....+. +-+..    .....+..  . .| ..|.   -+.+...+||
T Consensus       292 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi  370 (391)
T 4dq6_A          292 LESFLEYLESNIDFAIKYINENMPKLKVRK-PEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRI  370 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTSEECC-CSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCEecC-CCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEE
Confidence            3667888999999999999874  776543 3344333 44432    22222211  1 22 2121   1235689999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHHH
Q psy5049         112 ESSHLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~~  133 (153)
                      +++  +++|+|+++++ .|..+
T Consensus       371 s~~--~~~~~i~~~l~-~l~~~  389 (391)
T 4dq6_A          371 NLA--CPRSMLEEALI-RIKNA  389 (391)
T ss_dssp             ECC--SCHHHHHHHHH-HHHHH
T ss_pred             EEc--CCHHHHHHHHH-HHHHH
Confidence            998  79999999888 66654

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=94.11  E-value=0.12  Score=43.49  Aligned_cols=88  Identities=7%  Similarity=-0.026  Sum_probs=55.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC--CCcc--cCCCCCCeEEEEcCC-------chHHHhcc------ccccCCCCCCCCce
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL--GLIV--YGHRDSPVVPVLVFF-------FSKVGQTS------IGLGVEQTALNDGL  108 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~--G~~~--~~~s~SPIiPV~~g~-------~~~~~~~a------~~i~~PtVP~g~~R  108 (153)
                      .++..++++++..++++.|.+.  .+..  ...+...++.+.+.+       ...+..+.      -.+..|.-+ ....
T Consensus       343 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~  421 (453)
T 4ffc_A          343 ELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGT-FGNV  421 (453)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECT-TSCE
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCC-CCCE
Confidence            4578899999999999999764  1211  012335567776632       22232222      222333312 2378


Q ss_pred             EEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         109 SLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       109 lRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +||+++..+|+|||+++++ .|+.+.+
T Consensus       422 iRi~~~~~~t~e~i~~~l~-~l~~~l~  447 (453)
T 4ffc_A          422 IRLLPPLVIGDDLLDEGIT-ALSDIIR  447 (453)
T ss_dssp             EEECCCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH-HHHHHHH
Confidence            9999999999999999998 7766554

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=94.09  E-value=0.24  Score=39.26  Aligned_cols=77  Identities=8%  Similarity=-0.098  Sum_probs=51.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC--chHHHhcc---ccccCCCCCCCCceEEEEeeCCCCHH
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF--FSKVGQTS---IGLGVEQTALNDGLSLYESSHLRSAN  120 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~--~~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~HT~e  120 (153)
                      .++.+++++++..++.+.|.+.|+.+. .+.++++.+-+.+  ........   .....|    +...+||+++   +++
T Consensus       251 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~----~~~~iRis~~---~~~  322 (335)
T 1uu1_A          251 FEERTKFIVEERERMKSALREMGYRIT-DSRGNFVFVFMEKEEKERLLEHLRTKNVAVRS----FREGVRITIG---KRE  322 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCBC-CCCSSEEEEECCTHHHHHHHHHHHHHTEEEEE----ETTEEEEECC---CHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCcEEc-CCCCeEEEEECCCCCHHHHHHHHHHCCEEEEE----CCCeEEEEeC---CHH
Confidence            356788899999999999998887654 3557777776654  12222221   222223    4578999985   468


Q ss_pred             HHHHHHHHHHH
Q psy5049         121 LWNRPHSPSLM  131 (153)
Q Consensus       121 dId~L~~~~L~  131 (153)
                      |++++++ +|+
T Consensus       323 ~i~~~~~-~l~  332 (335)
T 1uu1_A          323 ENDMILR-ELE  332 (335)
T ss_dssp             HHHHHHH-HHH
T ss_pred             HHHHHHH-HHH
Confidence            8999887 664

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=94.05  E-value=0.12  Score=42.88  Aligned_cols=85  Identities=4%  Similarity=-0.053  Sum_probs=56.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC--CCccc--CCCCCCeEEEEcCCc-----hHHHhcc---ccccCCCCCCCCceEEEEe
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL--GLIVY--GHRDSPVVPVLVFFF-----SKVGQTS---IGLGVEQTALNDGLSLYES  113 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~--G~~~~--~~s~SPIiPV~~g~~-----~~~~~~a---~~i~~PtVP~g~~RlRI~l  113 (153)
                      .++.+++++++..++++.|.+.  ++...  ..+...++.+.+.+.     .+..+..   ..+..|.   +...+||++
T Consensus       319 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~---~~~~iRl~~  395 (420)
T 2pb2_A          319 TPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNA---GADVMRFAP  395 (420)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGTTCHHHHHHHHHHTTEECEES---STTEEEECC
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeC---CCCEEEEEC
Confidence            4678999999999999999875  23211  123467888777543     1222222   2222332   357899999


Q ss_pred             eCCCCHHHHHHHHHHHHHHHH
Q psy5049         114 SHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~  134 (153)
                      +..+|+||++++++ .|+.+.
T Consensus       396 ~~~~t~eei~~~~~-~l~~~l  415 (420)
T 2pb2_A          396 SLVVEEADIHEGMQ-RFAQAV  415 (420)
T ss_dssp             CTTCCHHHHHHHHH-HHHHHH
T ss_pred             CCCCCHHHHHHHHH-HHHHHH
Confidence            99999999999998 776554

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=93.95  E-value=0.092  Score=43.30  Aligned_cols=83  Identities=7%  Similarity=-0.146  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCC-Cccc--CCCCCCeEEEEcCC---chHHHhcc---ccccCCCCCCCCceEEEEeeCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLG-LIVY--GHRDSPVVPVLVFF---FSKVGQTS---IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G-~~~~--~~s~SPIiPV~~g~---~~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      ++..++++++..++++.|++.+ +...  ..+.+.++.+-+.+   ........   .....|.    ...+||+++..+
T Consensus       330 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~----~~~iRis~~~~~  405 (429)
T 1s0a_A          330 GDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPF----GKLIYLMPPYII  405 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEESSCBCHHHHHHHHHHTTEECCCB----TTEEEECCCTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEeeEEEEEEECCcccHHHHHHHHHHCCCEEecc----CCEEEEECCCCC
Confidence            4678999999999999998752 1110  11334566676653   22222222   2222332    368999999999


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy5049         118 SANLWNRPHSPSLMAVF  134 (153)
Q Consensus       118 T~edId~L~~~~L~~~~  134 (153)
                      |+||++++++ +|+.+.
T Consensus       406 t~e~i~~~~~-~l~~~~  421 (429)
T 1s0a_A          406 LPQQLQRLTA-AVNRAV  421 (429)
T ss_dssp             CHHHHHHHHH-HHHHHT
T ss_pred             CHHHHHHHHH-HHHHHH
Confidence            9999999998 777654

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=93.95  E-value=0.11  Score=43.64  Aligned_cols=87  Identities=11%  Similarity=0.039  Sum_probs=55.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC--CCcc--cCCCCCCeEEEEcCCchH-----------HHhcc------ccccCCCCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL--GLIV--YGHRDSPVVPVLVFFFSK-----------VGQTS------IGLGVEQTAL  104 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~--G~~~--~~~s~SPIiPV~~g~~~~-----------~~~~a------~~i~~PtVP~  104 (153)
                      .++..++++++..++++.|.+.  .+..  ...+...++.+.+.++..           +..+.      ..+..|.-  
T Consensus       347 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--  424 (460)
T 3gju_A          347 EMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP--  424 (460)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS--
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC--
Confidence            4578899999999999999542  1111  012335566776654321           22221      22222321  


Q ss_pred             CCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         105 NDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       105 g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +...+||+++..+|+||++++++ +|+.+.+
T Consensus       425 ~~~~iRi~~~~~~t~e~i~~~l~-~l~~~l~  454 (460)
T 3gju_A          425 QGDILGFAPPLCLTREQADIVVS-KTADAVK  454 (460)
T ss_dssp             SSCEEEECCCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH-HHHHHHH
Confidence            35899999999999999999998 7766544

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=93.93  E-value=0.36  Score=38.28  Aligned_cols=83  Identities=14%  Similarity=0.085  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC--chHHHhcc-----ccc----cCCCCCCCCceEEEEee
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF--FSKVGQTS-----IGL----GVEQTALNDGLSLYESS  114 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~--~~~~~~~a-----~~i----~~PtVP~g~~RlRI~ls  114 (153)
                      .++.+++.++..++.+.|.+. |+.+. .+.+..+.+.+..  .....+..     +.+    .|+  +.+...+||+++
T Consensus       247 ~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~--~~~~~~iRis~~  323 (350)
T 3fkd_A          247 TLPIRKWQRNTVDFITALNRLDGVEVH-PSGTTFFLLRLKKGTAAELKKYMLEEYNMLIRDASNFR--GLDESYVRITTQ  323 (350)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSTTEEEC-CCSSSEEEEEESSSCHHHHHHHHHHTTCEECEECTTST--TCCTTEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcEEC-CCCCcEEEEECCCCCHHHHHHHHHHHCCEEEEeCccCC--CCCCCEEEEEcC
Confidence            344455559999999999987 77663 4567777676664  22222211     111    222  345789999987


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhc
Q psy5049         115 HLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~~  136 (153)
                         +++|++++++ +|+.+.+.
T Consensus       324 ---~~~~~~~l~~-al~~~~~~  341 (350)
T 3fkd_A          324 ---RPAQNQLFIK-ALETFLEK  341 (350)
T ss_dssp             ---CHHHHHHHHH-HHHHHHTC
T ss_pred             ---CHHHHHHHHH-HHHHHHHH
Confidence               8999999999 88877754

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=93.87  E-value=0.37  Score=39.55  Aligned_cols=88  Identities=10%  Similarity=-0.047  Sum_probs=57.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCC---------------cccC---CCCCCeEEEEcCCc-hHHHhcc----c------
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGL---------------IVYG---HRDSPVVPVLVFFF-SKVGQTS----I------   95 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~---------------~~~~---~s~SPIiPV~~g~~-~~~~~~a----~------   95 (153)
                      ..+++++++.+|..++.+.|.+.+.               .+.+   .+..+++.+-+.+. +.+..+.    .      
T Consensus       261 ~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~i~~~~~s  340 (398)
T 1gc0_A          261 TLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVS  340 (398)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHHHHHHHhCCCceeccC
Confidence            3467889999999999999987531               1110   13478999888643 3333332    1      


Q ss_pred             ------cccCCC------CCC--------CCceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049          96 ------GLGVEQ------TAL--------NDGLSLYESSHLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus        96 ------~i~~Pt------VP~--------g~~RlRI~lsA~HT~edId~L~~~~L~~~  133 (153)
                            .+.+|+      +|.        ..+.+||++...+++++|+.+.+ +|+.+
T Consensus       341 ~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~-al~~~  397 (398)
T 1gc0_A          341 LGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQ-ALKAS  397 (398)
T ss_dssp             CSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHH-HHHHH
T ss_pred             CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHH-HHHhc
Confidence                  112343      121        25899999999999999999988 77653

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=93.65  E-value=0.19  Score=41.36  Aligned_cols=81  Identities=10%  Similarity=-0.075  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHH----hCCCcccCCCCCCe-EEEEcC--CchHHHhcc----ccccCCCCCCCCceEEEEeeCCC
Q psy5049          49 RISVLAHNTRYFRRKLN----RLGLIVYGHRDSPV-VPVLVF--FFSKVGQTS----IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        49 rr~~L~~ni~~fr~~L~----~~G~~~~~~s~SPI-iPV~~g--~~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      .+++++++..++.+.|.    +.|+.+. .+.++. +.+-+.  +.....+..    .....|.   +...+||+++. .
T Consensus       336 ~~~~~~~~~~~l~~~L~~~~~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g---~~~~iRis~~~-~  410 (430)
T 2x5f_A          336 NIQTLKERYEVTKEVVYADQYHSHWQAY-DFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIAL---NATDIRIAFSC-V  410 (430)
T ss_dssp             HHHHHHHHHHHHHHHHTCGGGTTTEEEC-CCCBSSEEEEEESSSCHHHHHHHHHHHHCEECEEC---SSSEEEEEGGG-S
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCceee-CCCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecC---CCCeEEEEEec-C
Confidence            78888899999999998    6676653 344443 555554  333222221    2223343   46789999996 5


Q ss_pred             CHHHHHHHHHHHHHHHHh
Q psy5049         118 SANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       118 T~edId~L~~~~L~~~~~  135 (153)
                      +++|++++++ .|+.+.+
T Consensus       411 ~~e~i~~~~~-~l~~~l~  427 (430)
T 2x5f_A          411 EKDDIPHVFD-SIAKAID  427 (430)
T ss_dssp             CGGGHHHHHH-HHHHHHH
T ss_pred             CHHHHHHHHH-HHHHHHH
Confidence            9999999998 7766543

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=93.64  E-value=0.21  Score=40.04  Aligned_cols=87  Identities=11%  Similarity=-0.062  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCc---hHH-Hhcc----ccccCCCCCCCCceEEEEeeCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFF---SKV-GQTS----IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~---~~~-~~~a----~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      .+.+++++++..++.+.|.+. |+.......+..+.+.+...   ... ..+.    +.+.+-........+|++++.. 
T Consensus       275 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~~iRi~~~~~-  353 (375)
T 3op7_A          275 ERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFERDGYVRLGFACE-  353 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEECCCSC-
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCeEEEEecCC-
Confidence            456777789999999999885 44432223334555555432   121 1111    2222211122257899998754 


Q ss_pred             CHHHHHHHHHHHHHHHHhc
Q psy5049         118 SANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       118 T~edId~L~~~~L~~~~~~  136 (153)
                       .++|++.++ .+..+.+.
T Consensus       354 -~~~i~~~l~-~l~~~l~~  370 (375)
T 3op7_A          354 -QETLIKGLE-KLSQFLRR  370 (375)
T ss_dssp             -HHHHHHHHH-HHHHHHGG
T ss_pred             -HHHHHHHHH-HHHHHHHH
Confidence             499999888 77665543

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=93.52  E-value=0.31  Score=40.10  Aligned_cols=87  Identities=15%  Similarity=0.002  Sum_probs=53.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCC---C--CCeEEEEcCC------chHHHhcc----cccc--CC-CCCC---
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHR---D--SPVVPVLVFF------FSKVGQTS----IGLG--VE-QTAL---  104 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s---~--SPIiPV~~g~------~~~~~~~a----~~i~--~P-tVP~---  104 (153)
                      ++.+++..++..++++.|.+. |+.+...+   .  ..++++.+.+      .....+..    +.++  |+ .+..   
T Consensus       260 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~  339 (424)
T 2po3_A          260 PEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEP  339 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTT
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchh
Confidence            557778888889999999876 66543211   1  2677776652      23333322    2221  21 1110   


Q ss_pred             ----------CCce-----EEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         105 ----------NDGL-----SLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       105 ----------g~~R-----lRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                                +..|     +|+.++..+|++|++++++ +|+.+.
T Consensus       340 ~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~-~L~~~~  383 (424)
T 2po3_A          340 YRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVAD-LLRLCA  383 (424)
T ss_dssp             TTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHH-HHHHHH
T ss_pred             hhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHH-HHHHHH
Confidence                      1123     8888889999999999999 776554

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=93.45  E-value=0.2  Score=41.53  Aligned_cols=84  Identities=7%  Similarity=-0.077  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCC-CcccC--CCCCCeEEEEcCCch--------HHHhcc---ccccCCCCCCCCceEEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLG-LIVYG--HRDSPVVPVLVFFFS--------KVGQTS---IGLGVEQTALNDGLSLYE  112 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G-~~~~~--~s~SPIiPV~~g~~~--------~~~~~a---~~i~~PtVP~g~~RlRI~  112 (153)
                      ++..++++++..++++.|.+.+ +...+  .+...++.+.+....        ...+..   ..+..|.   | ..+||+
T Consensus       348 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---g-~~iRis  423 (449)
T 3a8u_X          348 ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFG---G-DTLQFG  423 (449)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEE---T-TEEEEC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecC---C-CEEEEE
Confidence            4688999999999999998754 32211  134578888775431        122222   2223333   4 789999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      .+..+|++|++++++ +|+.+.+
T Consensus       424 ~~~~~t~~~i~~~l~-~l~~~l~  445 (449)
T 3a8u_X          424 PTFNSKPQDLDRLFD-AVGEVLN  445 (449)
T ss_dssp             CCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             CCCcCCHHHHHHHHH-HHHHHHH
Confidence            999999999999998 7776543

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=93.44  E-value=0.27  Score=39.58  Aligned_cols=84  Identities=15%  Similarity=0.086  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCe-EEEEcC----CchHHHhcc----ccccCCCCCC-CCceEEEEeeC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPV-VPVLVF----FFSKVGQTS----IGLGVEQTAL-NDGLSLYESSH  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPI-iPV~~g----~~~~~~~~a----~~i~~PtVP~-g~~RlRI~lsA  115 (153)
                      .+.+++++++..++.+.|++. |+.+.. +.+.. +-+-+.    +.....+..    .....|...- ....+||++. 
T Consensus       290 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~-  367 (388)
T 1j32_A          290 QEMLAAFAERRRYMLDALNAMPGLECPK-PDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA-  367 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCBCCC-CCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC-
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCcccC-CCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec-
Confidence            567888999999999999987 776543 33332 222222    222222211    1111221111 1467999986 


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~~  134 (153)
                       +|+|+|+++++ .++.+.
T Consensus       368 -~~~~~i~~~~~-~l~~~l  384 (388)
T 1j32_A          368 -TDLDTIKRGME-RLEKFL  384 (388)
T ss_dssp             -SCHHHHHHHHH-HHHHHH
T ss_pred             -CCHHHHHHHHH-HHHHHH
Confidence             79999999888 666543

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=93.38  E-value=0.15  Score=41.07  Aligned_cols=87  Identities=6%  Similarity=-0.092  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCC---CCeEEEEcCC--chHHHhc--c-ccccC-----------------CC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRD---SPVVPVLVFF--FSKVGQT--S-IGLGV-----------------EQ  101 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~---SPIiPV~~g~--~~~~~~~--a-~~i~~-----------------Pt  101 (153)
                      ++.+++++++..++.+.|...|+.+.....   ..++.+.+.+  .....+.  . +.+++                 ..
T Consensus       283 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~gi~v~~g~~~~~~~~~~~~~~~~~g  362 (400)
T 3vax_A          283 AQWQVAAQDLRSRLLAGLASTSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLKDLVAVATGSASTSASFTPSHVLRAMG  362 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHHHHHTTTTEEEEEEECCHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhcCcEEEecccccCCCCCccHHHHHcC
Confidence            678888999999999999855776543222   2477777653  2222111  1 11111                 01


Q ss_pred             CCC--CCceEEEEe-eCCCCHHHHHHHHHHHHHHHH
Q psy5049         102 TAL--NDGLSLYES-SHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       102 VP~--g~~RlRI~l-sA~HT~edId~L~~~~L~~~~  134 (153)
                      ++.  ....+||++ +..+|+||++++++ +|+.+.
T Consensus       363 ~~~~~~~~~iRls~~~~~~t~e~i~~~~~-~l~~~~  397 (400)
T 3vax_A          363 LPEEAASKSLRFSWTPGQATDLDVEELAR-GVAKLK  397 (400)
T ss_dssp             CCHHHHTSEEEEEEEEC-------------------
T ss_pred             CCccccCceEEEEccCCCCCHHHHHHHHH-HHHHHh
Confidence            111  147899999 99999999999988 776554

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=93.29  E-value=0.4  Score=39.00  Aligned_cols=85  Identities=8%  Similarity=0.054  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcC--------CchHHHh-cc----ccccCCCCCCCCceEEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVF--------FFSKVGQ-TS----IGLGVEQTALNDGLSLYE  112 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g--------~~~~~~~-~a----~~i~~PtVP~g~~RlRI~  112 (153)
                      ++.+++++++..++.+.|.+. |+.+.....+..+.+-+.        +...... +.    +.+++-........+||+
T Consensus       312 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis  391 (416)
T 1bw0_A          312 DQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLT  391 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEE
Confidence            567888999999999999987 765433333555555443        2222222 21    222211111124689999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHH
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~  134 (153)
                      ++  +++++|+..++ .+..+.
T Consensus       392 ~~--~~~e~l~~~l~-~l~~~l  410 (416)
T 1bw0_A          392 TT--RPVEVYREAVE-RIKAFC  410 (416)
T ss_dssp             CC--SCHHHHHHHHH-HHHHHH
T ss_pred             ec--CCHHHHHHHHH-HHHHHH
Confidence            94  78999999888 666544

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=93.18  E-value=0.082  Score=44.85  Aligned_cols=49  Identities=10%  Similarity=-0.018  Sum_probs=42.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC-----eEEEEcCCchHHHhcc
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSP-----VVPVLVFFFSKVGQTS   94 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SP-----IiPV~~g~~~~~~~~a   94 (153)
                      ..+.+++++++|+.++.+.|.+.|+.+. .+.++     |+||.+++.+++.+++
T Consensus       279 ~~~~r~~~~~~~a~~la~~L~~~g~~v~-p~~~~~~~~~i~~i~l~~~~~~~~~~  332 (409)
T 3jzl_A          279 LAPHVTAQAIKGARFTAAMLAEFGVEAD-PVWDAPRTDLIQSVSFHNKEKMVAFA  332 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEE-SCTTSCCSSSCCEEECSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCCccEEEEEEeCCHHHHHHHH
Confidence            4578999999999999999999999874 34666     9999999988887775

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=93.09  E-value=0.17  Score=43.23  Aligned_cols=85  Identities=4%  Similarity=-0.090  Sum_probs=54.8

Q ss_pred             chHHHHHHH-HHHHHHHHHHHhCC-Cccc--CCCCCCeEEEEcCCch------------HHHhcc-----cc-ccCCCCC
Q psy5049          46 GIRRISVLA-HNTRYFRRKLNRLG-LIVY--GHRDSPVVPVLVFFFS------------KVGQTS-----IG-LGVEQTA  103 (153)
Q Consensus        46 ~~~rr~~L~-~ni~~fr~~L~~~G-~~~~--~~s~SPIiPV~~g~~~------------~~~~~a-----~~-i~~PtVP  103 (153)
                      .++.+++++ ++..++++.|+++. +...  ..+...++.+.+..+.            .+..+.     .. +..|.  
T Consensus       344 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--  421 (472)
T 3hmu_A          344 EENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHV--  421 (472)
T ss_dssp             HTTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE--
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEec--
Confidence            467899999 99999999997652 1110  0133456666665321            122222     22 22232  


Q ss_pred             CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         104 LNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       104 ~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                       | ..+||+.+..+|+||++++++ +|+.+.+
T Consensus       422 -g-~~iRi~p~~~~t~e~i~~~l~-~l~~~l~  450 (472)
T 3hmu_A          422 -G-DRMIISPPLVITPAEIDEMFV-RIRKSLD  450 (472)
T ss_dssp             -T-TEEEECCCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             -C-CEEEEECCCCCCHHHHHHHHH-HHHHHHH
Confidence             4 899999999999999999998 7765543

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=93.03  E-value=0.17  Score=40.99  Aligned_cols=83  Identities=11%  Similarity=-0.072  Sum_probs=51.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc---------------hHHHhcc----c----cccCCC-
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF---------------SKVGQTS----I----GLGVEQ-  101 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~---------------~~~~~~a----~----~i~~Pt-  101 (153)
                      ..+.+++++++..++.+.|++.|+.+.....+..+.+-+...               +.+..+.    +    +..|-. 
T Consensus       299 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~  378 (410)
T 3e2y_A          299 FNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDS  378 (410)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCC
Confidence            367788899999999999999998754333344444433210               1111111    1    111211 


Q ss_pred             --CCCCCceEEEEeeCCCCHHHHHHHHHHHHH
Q psy5049         102 --TALNDGLSLYESSHLRSANLWNRPHSPSLM  131 (153)
Q Consensus       102 --VP~g~~RlRI~lsA~HT~edId~L~~~~L~  131 (153)
                        .|.+...+||+++.  |+|+|+++++ .|+
T Consensus       379 ~~~~~~~~~iRis~~~--~~e~l~~~l~-~l~  407 (410)
T 3e2y_A          379 KSKPHFEKLVRFCFIK--KDSTLDAAEE-IFR  407 (410)
T ss_dssp             TTHHHHTTEEEEECCC--CHHHHHHHHH-HHH
T ss_pred             CCCCCCCCEEEEEEcC--CHHHHHHHHH-HHH
Confidence              12357899999865  9999999877 554

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=92.97  E-value=0.64  Score=38.39  Aligned_cols=89  Identities=12%  Similarity=-0.014  Sum_probs=58.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCC--c-c-cC---------------CC-C-CCeEEEEcCCc-hHHHhcc--------
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGL--I-V-YG---------------HR-D-SPVVPVLVFFF-SKVGQTS--------   94 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~--~-~-~~---------------~s-~-SPIiPV~~g~~-~~~~~~a--------   94 (153)
                      ..+++.+++.+|...+.+.|.+.+.  . + ..               .+ . .+|+.+.+.+. ..+..+.        
T Consensus       252 ~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~  331 (393)
T 1n8p_A          252 TLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTL  331 (393)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceE
Confidence            3466788899999999999987642  0 1 00               01 3 67999988643 3333322        


Q ss_pred             --------ccccCCCCCC------------C--CceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049          95 --------IGLGVEQTAL------------N--DGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus        95 --------~~i~~PtVP~------------g--~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                              ..+..|+.|.            |  .+.+|++++..+++++|+.+.+ +|+.+.
T Consensus       332 ~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~-al~~~~  392 (393)
T 1n8p_A          332 AESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQ-ALKQAT  392 (393)
T ss_dssp             CSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHH-HHHHHH
T ss_pred             CCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHH-HHHHhh
Confidence                    1113343332            2  5799999999999999999998 887653

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=92.93  E-value=0.12  Score=42.28  Aligned_cols=78  Identities=10%  Similarity=-0.091  Sum_probs=49.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC----CcccCCCCCCeEEEEcCCch-HHHhcc---ccccCCCCCCCCceEEEEeeCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG----LIVYGHRDSPVVPVLVFFFS-KVGQTS---IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G----~~~~~~s~SPIiPV~~g~~~-~~~~~a---~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      ..+.+++++++..++.+.|++.|    +.+. .+++.++.+ ++-+. .+..+.   .....|.       .||+++ .+
T Consensus       323 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~-~~~~~~~~~~ll~~~gv~v~p~-------~Ri~~~-~~  392 (409)
T 4eu1_A          323 LKQMSSRIAEVRKRLVSELKACGSVHDWSHI-ERQVGMMAY-TGLTREQVELLRSEYHIYMTLN-------GRAAVS-GL  392 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCSCCHHH-HHSCSSEEE-CCCCHHHHHHHHHHHCEECCTT-------CEEEGG-GC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCccee-cCCceEEEE-eCCCHHHHHHHHHcCCEEEcCC-------CEEEEE-ec
Confidence            35688899999999999999987    4432 234455444 33332 322222   2223342       377774 57


Q ss_pred             CHHHHHHHHHHHHHHHH
Q psy5049         118 SANLWNRPHSPSLMAVF  134 (153)
Q Consensus       118 T~edId~L~~~~L~~~~  134 (153)
                      |++||+++++ +++.+.
T Consensus       393 ~~~~i~~~~~-~l~~~l  408 (409)
T 4eu1_A          393 NSTNVEYVSQ-AIHNVT  408 (409)
T ss_dssp             CTTTHHHHHH-HHHHHH
T ss_pred             CHhhHHHHHH-HHHHHh
Confidence            7888999998 776553

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=92.84  E-value=0.34  Score=39.59  Aligned_cols=88  Identities=8%  Similarity=-0.032  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCccc--CC----CCCC-eEEEEcCC----chHHHhcc------ccc-cCC-------
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVY--GH----RDSP-VVPVLVFF----FSKVGQTS------IGL-GVE-------  100 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~--~~----s~SP-IiPV~~g~----~~~~~~~a------~~i-~~P-------  100 (153)
                      ++.++++.++..++.+.|.+. |+.+.  +.    ..+| ++.+.+.+    .....+..      ..+ ..|       
T Consensus       305 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~  384 (432)
T 3a9z_A          305 ETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPS  384 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCCcc
Confidence            567888889999999999874 65331  11    1234 66666653    22222211      111 111       


Q ss_pred             ------CCC--CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         101 ------QTA--LNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       101 ------tVP--~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                            .++  .+...+||+++..+|+||++++++ +|+.+.+
T Consensus       385 ~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~-~l~~~~~  426 (432)
T 3a9z_A          385 PVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQ-DLKQAVN  426 (432)
T ss_dssp             HHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             HHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHH-HHHHHHH
Confidence                  111  124689999999999999999999 8876543

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=92.83  E-value=0.34  Score=41.25  Aligned_cols=86  Identities=9%  Similarity=0.017  Sum_probs=55.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC--chHHHhcc--ccccCCCCCCCCceEEEEeeCCCC-H
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF--FSKVGQTS--IGLGVEQTALNDGLSLYESSHLRS-A  119 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~--~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~HT-~  119 (153)
                      ..++++++.++..++++.|.+. |+.+.. +...++.+....  .....+..  ..|..+... ....+|++++..++ +
T Consensus       375 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~g~~-~~~~~Ri~~~~~~~~~  452 (514)
T 3mad_A          375 YLDATRRILQAADRLKAGVRAIPSLKILG-DPLWVIAVASDELNIYQVMEEMAGRGWRLNGLH-RPPAFHVALTLRHTEP  452 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTCEESS-CCSSEEEEECSSSCHHHHHHHHHTTTCBCEEET-TTTEEEEECCGGGGST
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCeEEeC-CCeEEEEEeCCCCCHHHHHHHHHhcCCEeccCC-CCCeEEEEEecCCCCH
Confidence            3678899999999999999986 776643 445676665532  12222222  222223322 13579999997665 5


Q ss_pred             HHHHHHHHHHHHHHH
Q psy5049         120 NLWNRPHSPSLMAVF  134 (153)
Q Consensus       120 edId~L~~~~L~~~~  134 (153)
                      ||++++++ .|+.+.
T Consensus       453 e~i~~~l~-~L~~~l  466 (514)
T 3mad_A          453 GVVDRFLA-DLQDAV  466 (514)
T ss_dssp             THHHHHHH-HHHHHH
T ss_pred             HHHHHHHH-HHHHHH
Confidence            99999998 776544

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=92.80  E-value=0.32  Score=39.58  Aligned_cols=85  Identities=9%  Similarity=0.010  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeE-EEEcC-----CchHHHh-cc---ccccCCCC---CCCCceEEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVV-PVLVF-----FFSKVGQ-TS---IGLGVEQT---ALNDGLSLYE  112 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIi-PV~~g-----~~~~~~~-~a---~~i~~PtV---P~g~~RlRI~  112 (153)
                      .+.+++++++..++.+.|.+. |+.+.. +++..+ -+.+.     +...... +.   .....|..   +.+...+||+
T Consensus       303 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis  381 (406)
T 1xi9_A          303 KEYMKKLKERRDYIYKRLNEIPGISTTK-PQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAV  381 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTEECCC-CCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCeeec-CCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEE
Confidence            567888999999999999987 665432 333332 22232     2222222 11   11111211   1346789999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      ++  +++++|+.+++ .+..+.+
T Consensus       382 ~~--~~~~~i~~~~~-~l~~~l~  401 (406)
T 1xi9_A          382 FL--PPIEILEEAMD-RFEKFMK  401 (406)
T ss_dssp             CC--SCHHHHHHHHH-HHHHHHH
T ss_pred             ec--CCHHHHHHHHH-HHHHHHH
Confidence            97  99999999988 7765543

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=92.76  E-value=0.18  Score=40.05  Aligned_cols=78  Identities=12%  Similarity=0.063  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCcc-cCCCCCCeEEEEcCCc-----hHHHhcc----ccc---cCCCCCCCCceEEEEe
Q psy5049          48 RRISVLAHNTRYFRRKLNRL-GLIV-YGHRDSPVVPVLVFFF-----SKVGQTS----IGL---GVEQTALNDGLSLYES  113 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~-G~~~-~~~s~SPIiPV~~g~~-----~~~~~~a----~~i---~~PtVP~g~~RlRI~l  113 (153)
                      ++.++..++..++.+.|.+. |+.+ ...+.+.++.+-+.+.     ....+..    +.+   .++. | |...+|+++
T Consensus       256 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~-~-~~~~~r~~i  333 (357)
T 3lws_A          256 DRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDK-D-GYCSTEISV  333 (357)
T ss_dssp             TCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEEC-S-SEEEEEEEB
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccC-C-CceEEEEEe
Confidence            44555688899999999987 7765 2346678888777653     1222222    222   2222 4 678999999


Q ss_pred             eCCC---CHHHHHHHHH
Q psy5049         114 SHLR---SANLWNRPHS  127 (153)
Q Consensus       114 sA~H---T~edId~L~~  127 (153)
                      .+.+   ++++++..++
T Consensus       334 ~~~~~~~~~~~l~~al~  350 (357)
T 3lws_A          334 GDAYGELDQQTRDAGFA  350 (357)
T ss_dssp             CTTGGGSCHHHHHHHHH
T ss_pred             cchhhhcCHHHHHHHHH
Confidence            9775   6667766555

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=92.74  E-value=0.3  Score=40.17  Aligned_cols=80  Identities=11%  Similarity=-0.125  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc-------------hHHHhcc------ccccCCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF-------------SKVGQTS------IGLGVEQTA  103 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~-------------~~~~~~a------~~i~~PtVP  103 (153)
                      ++.+++++++..++++.|++.    |+.....+...++.+.+.+.             ....++.      ..+..|.  
T Consensus       320 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--  397 (424)
T 2e7u_A          320 PGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPS--  397 (424)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSS--
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEecc--
Confidence            678999999999999999875    65321124467888887641             1122222      2223332  


Q ss_pred             CCCceEEEEeeCCCCHHHHHHHHHHHHHH
Q psy5049         104 LNDGLSLYESSHLRSANLWNRPHSPSLMA  132 (153)
Q Consensus       104 ~g~~RlRI~lsA~HT~edId~L~~~~L~~  132 (153)
                       +..+  +.++..||++|++++++ +|+.
T Consensus       398 -~~~~--~~~~~~~t~~~i~~~l~-~l~~  422 (424)
T 2e7u_A          398 -NFEA--AFLSVAHREEDVEKTLE-ALRK  422 (424)
T ss_dssp             -SSSC--EECCTTCCHHHHHHHHH-HHHH
T ss_pred             -CCCc--eEeeccCCHHHHHHHHH-HHHH
Confidence             2234  55678999999999888 6654

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=92.71  E-value=0.24  Score=42.21  Aligned_cols=84  Identities=12%  Similarity=-0.037  Sum_probs=54.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC-Cccc--CCCCCCeEEEEcCCch-----------HHHhcc------ccccCCCCCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG-LIVY--GHRDSPVVPVLVFFFS-----------KVGQTS------IGLGVEQTALN  105 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G-~~~~--~~s~SPIiPV~~g~~~-----------~~~~~a------~~i~~PtVP~g  105 (153)
                      .++.+++++++..++++.|+.++ +...  ..+...++.|.+.++.           .+..+.      ..+..|   .|
T Consensus       348 ~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~---~g  424 (476)
T 3i5t_A          348 REGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRP---LG  424 (476)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEE---ET
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEe---cC
Confidence            46789999999999999999653 1110  0123456666665431           122222      222223   34


Q ss_pred             CceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         106 DGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       106 ~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                       ..+||+.+..+|++||+++++ +|+.+.
T Consensus       425 -~~iRi~p~l~~t~e~i~~~l~-~l~~~l  451 (476)
T 3i5t_A          425 -DLCVISPPLIISRAQIDEMVA-IMRQAI  451 (476)
T ss_dssp             -TEEEECCCTTCCHHHHHHHHH-HHHHHH
T ss_pred             -CEEEEECCCCCCHHHHHHHHH-HHHHHH
Confidence             899999999999999999998 776544

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=92.67  E-value=0.29  Score=40.07  Aligned_cols=83  Identities=10%  Similarity=-0.058  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCe-EEEEcCCc---hHHHhc-c---ccccCCC---CCCCCceEEEEeeC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPV-VPVLVFFF---SKVGQT-S---IGLGVEQ---TALNDGLSLYESSH  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPI-iPV~~g~~---~~~~~~-a---~~i~~Pt---VP~g~~RlRI~lsA  115 (153)
                      ++.+++++++..++.+.|.+.|+.+.. +++++ +.+-+.+.   ....+. .   .....|.   -+.+...+||+++.
T Consensus       306 ~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~  384 (404)
T 2o1b_A          306 EEQSNVFKTRRDRFEAMLAKADLPFVH-AKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL  384 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEEC-CCBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCeecC-CCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC
Confidence            567788899999999999988887643 44454 55555432   222221 1   1111111   12246789999986


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~  133 (153)
                        ++++|+++++ .++.+
T Consensus       385 --~~e~l~~~l~-~l~~~  399 (404)
T 2o1b_A          385 --DDQKLDEAAI-RLTEL  399 (404)
T ss_dssp             --CTTHHHHHHH-HHHGG
T ss_pred             --CHHHHHHHHH-HHHHH
Confidence              7889999777 66543

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=92.65  E-value=0.87  Score=36.87  Aligned_cols=88  Identities=10%  Similarity=-0.030  Sum_probs=57.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCC------cccC------------CCCCCeEEEEcCCc-hHHHhcc----cccc----
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGL------IVYG------------HRDSPVVPVLVFFF-SKVGQTS----IGLG----   98 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~------~~~~------------~s~SPIiPV~~g~~-~~~~~~a----~~i~----   98 (153)
                      .+++++++.+|..++.+.|.+.+.      ..+.            .+.++++.+.+.+. +.+..+.    ..++    
T Consensus       248 ~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~  327 (386)
T 1cs1_A          248 LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESL  327 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHhCCcceEcccC
Confidence            356788899999999999987532      1000            12378888887643 3333322    2111    


Q ss_pred             --------CCCC------C--------CCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049          99 --------VEQT------A--------LNDGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus        99 --------~PtV------P--------~g~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                              +|+.      |        .+...+||++...+++++|+.+.+ +++.+.
T Consensus       328 g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~-al~~~~  384 (386)
T 1cs1_A          328 GGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLEN-GFRAAN  384 (386)
T ss_dssp             CSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHH-HHHHHT
T ss_pred             CCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHH-HHHHhh
Confidence                    2211      1        125799999999999999999998 877654

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=92.53  E-value=0.74  Score=37.55  Aligned_cols=30  Identities=3%  Similarity=-0.092  Sum_probs=23.8

Q ss_pred             CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         103 ALNDGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       103 P~g~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      +.+...+||+++.. |+++|+++++ .|..+.
T Consensus       383 ~~~~~~iRis~~~~-~~~~i~~~~~-~l~~~l  412 (423)
T 3ez1_A          383 DPHNRNLRLAPTRP-PVEEVRTAMQ-VVAACI  412 (423)
T ss_dssp             CSSSCEEEECCSSS-CHHHHHHHHH-HHHHHH
T ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHH-HHHHHH
Confidence            45678999999555 9999999988 776544

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=92.31  E-value=0.42  Score=38.32  Aligned_cols=81  Identities=6%  Similarity=-0.161  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC-eEEEEcCCc---hHHHhcc---ccccCCCC---CCCCceEEEEeeCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSP-VVPVLVFFF---SKVGQTS---IGLGVEQT---ALNDGLSLYESSHL  116 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SP-IiPV~~g~~---~~~~~~a---~~i~~PtV---P~g~~RlRI~lsA~  116 (153)
                      ++.+++++++..++.+.|.+. +.+.. +.+. .+.+-+.+.   ....+..   .....|..   +.+...+||+++. 
T Consensus       283 ~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~-  359 (376)
T 2dou_A          283 RGYARVYRERALGMAEALKGV-LSLLP-PRATMYLWGRLPEGVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR-  359 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTT-SEECC-CCBSSEEEEECCTTCCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS-
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-cCccC-CCeeEEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC-
Confidence            567788899999999999887 65532 3333 455555432   2222221   11111111   2246789999975 


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy5049         117 RSANLWNRPHSPSLMA  132 (153)
Q Consensus       117 HT~edId~L~~~~L~~  132 (153)
                       ++++++++++ .++.
T Consensus       360 -~~~~i~~~l~-~l~~  373 (376)
T 2dou_A          360 -PLEELLEAAK-RIRE  373 (376)
T ss_dssp             -CHHHHHHHHH-HHHH
T ss_pred             -CHHHHHHHHH-HHHH
Confidence             8999999777 5543

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=92.24  E-value=0.86  Score=37.46  Aligned_cols=86  Identities=14%  Similarity=0.048  Sum_probs=49.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHh----CC-CcccCCCCCCeEEEEcCC--chHHHhcc----ccc-----cCCCCC-CCCceE
Q psy5049          47 IRRISVLAHNTRYFRRKLNR----LG-LIVYGHRDSPVVPVLVFF--FSKVGQTS----IGL-----GVEQTA-LNDGLS  109 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~----~G-~~~~~~s~SPIiPV~~g~--~~~~~~~a----~~i-----~~PtVP-~g~~Rl  109 (153)
                      .+.++.++++..++.+.|.+    .| +.+...+.+..+-+-+.+  .+.+....    +.+     .|+..+ .+...+
T Consensus       313 ~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~i  392 (422)
T 3d6k_A          313 LKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDPNNENI  392 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeE
Confidence            33466666677777777754    34 332222334445555543  23333322    222     233222 246789


Q ss_pred             EEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         110 LYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       110 RI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      ||+++. +|+++++++++ .|+.+.
T Consensus       393 Ris~~~-~~~e~i~~~~~-~l~~~l  415 (422)
T 3d6k_A          393 RLAPSL-PPVAELEVAMD-GFATCV  415 (422)
T ss_dssp             EECCSS-SCHHHHHHHHH-HHHHHH
T ss_pred             EEecCC-CCHHHHHHHHH-HHHHHH
Confidence            999998 99999999988 776554

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=92.22  E-value=0.48  Score=38.99  Aligned_cols=84  Identities=7%  Similarity=-0.072  Sum_probs=52.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc-------------hHHHhcc-----ccc-cCCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF-------------SKVGQTS-----IGL-GVEQT  102 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~-------------~~~~~~a-----~~i-~~PtV  102 (153)
                      .++.+++++++..++++.|++.    ++.....+...++.+.+.+.             ..+..+.     ..+ ..|. 
T Consensus       322 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-  400 (434)
T 3l44_A          322 QEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPS-  400 (434)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSS-
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeec-
Confidence            4678999999999999999864    43211123456777766321             1112221     222 2222 


Q ss_pred             CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         103 ALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       103 P~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                        +...+|+  +..+|+||++++++ +|+.+.+
T Consensus       401 --~~~~~rl--~~~~t~e~i~~~l~-~l~~~l~  428 (434)
T 3l44_A          401 --KYEAWFL--TTEHTKEDIEYTIE-AVGRAFA  428 (434)
T ss_dssp             --TTCCEEC--CTTCCHHHHHHHHH-HHHHHHH
T ss_pred             --CCCcEEE--ecccCHHHHHHHHH-HHHHHHH
Confidence              3456776  57999999999998 7776543

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=92.06  E-value=0.43  Score=38.97  Aligned_cols=86  Identities=12%  Similarity=-0.012  Sum_probs=56.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC---------Cc------ccC---CCCCCeEEEEcCCc-hHHHhcc-------ccc--
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG---------LI------VYG---HRDSPVVPVLVFFF-SKVGQTS-------IGL--   97 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G---------~~------~~~---~s~SPIiPV~~g~~-~~~~~~a-------~~i--   97 (153)
                      ..++.+++.+|..++.+.|.+.+         +.      +..   .+.++++.+-+.+. ..+..+.       ..+  
T Consensus       261 ~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~  340 (398)
T 2rfv_A          261 LGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSL  340 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHTTCSSSEECSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHHhCCcceeccCC
Confidence            45677889999999999998754         11      000   13478888877643 2333332       111  


Q ss_pred             -------cCCCC------C------CC--CceEEEEeeCCCCHHHHHHHHHHHHHH
Q psy5049          98 -------GVEQT------A------LN--DGLSLYESSHLRSANLWNRPHSPSLMA  132 (153)
Q Consensus        98 -------~~PtV------P------~g--~~RlRI~lsA~HT~edId~L~~~~L~~  132 (153)
                             .+|+.      |      .|  .+.+|++++..+++++|+.+.+ +++.
T Consensus       341 G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~-al~~  395 (398)
T 2rfv_A          341 GDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEH-AIRK  395 (398)
T ss_dssp             SSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHH-HHHH
T ss_pred             CCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHH-HHHh
Confidence                   12321      1      12  6899999999999999999988 7764

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=92.06  E-value=0.43  Score=39.38  Aligned_cols=82  Identities=9%  Similarity=-0.072  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc-------------hHHHhcc------ccccCCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF-------------SKVGQTS------IGLGVEQTA  103 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~-------------~~~~~~a------~~i~~PtVP  103 (153)
                      +++.++++++..++++.|.+.    ++.....+...++.+.+.+.             ....++.      .....|.  
T Consensus       324 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--  401 (434)
T 2epj_A          324 EPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPS--  401 (434)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSS--
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEecc--
Confidence            568899999999999999875    65321124467888877641             1122222      2223333  


Q ss_pred             CCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         104 LNDGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       104 ~g~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                       +..  |+.++..||++|++++++ +|+.+.
T Consensus       402 -~~~--~~~~~~~~t~e~i~~~l~-~l~~~l  428 (434)
T 2epj_A          402 -NLE--AVFTGLPHQGEALEIAVE-GLRSSL  428 (434)
T ss_dssp             -TTS--CEECCTTCSHHHHHHHHH-HHHHHH
T ss_pred             -CCC--cEEEeccCCHHHHHHHHH-HHHHHH
Confidence             223  455678999999999998 776554

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=91.80  E-value=0.59  Score=38.83  Aligned_cols=99  Identities=13%  Similarity=0.009  Sum_probs=58.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCC-----c--------------hHHHhcc-----ccc
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFF-----F--------------SKVGQTS-----IGL   97 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~-----~--------------~~~~~~a-----~~i   97 (153)
                      .++..++++++..++++.|++.    ++.....+...++.|.+.+     .              ....++.     ..|
T Consensus       323 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv  402 (453)
T 2cy8_A          323 EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGV  402 (453)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTE
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCe
Confidence            3567899999999999999865    5432113456788888764     1              1122222     222


Q ss_pred             -cCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHH-HhcCCCceeeeccccccCC
Q psy5049          98 -GVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAV-FRGGGPGIFPLQHRADSEN  152 (153)
Q Consensus        98 -~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~-~~~~~~~~~~~~~~~~~~~  152 (153)
                       ..|   .  .++|  ++..||++|++++++ +|+.+ .+....|.++-+.+.-|.|
T Consensus       403 ~v~~---~--~~~~--l~~~~t~~~i~~~l~-~l~~~l~~~~~~~~~~~~~~~~~~~  451 (453)
T 2cy8_A          403 DIGG---R--GSVF--LSAQHEREHVEHLVT-TFDRVLDRLADENLLSWQGTNLSGN  451 (453)
T ss_dssp             ECBT---T--TEEE--CCTTCCHHHHHHHHH-HHHHHHHHHHHTTCCCCCC------
T ss_pred             EEeC---C--CCEE--eeccCCHHHHHHHHH-HHHHHHHHHHhCCCccccccccCCC
Confidence             222   2  2444  579999999999998 77544 3333446677666655443

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=91.77  E-value=0.83  Score=36.93  Aligned_cols=83  Identities=4%  Similarity=-0.165  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCC----chHHHhcc----ccc----c-CCCCCC----CCc
Q psy5049          49 RISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFF----FSKVGQTS----IGL----G-VEQTAL----NDG  107 (153)
Q Consensus        49 rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~----~~~~~~~a----~~i----~-~PtVP~----g~~  107 (153)
                      .+++++++..++.+.|.+.    |+.+.....+..+.+-+..    ........    +.+    . ++..+.    +..
T Consensus       307 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~  386 (417)
T 3g7q_A          307 IKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQ  386 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCC
Confidence            5667788888888888753    4544333334555555543    22222222    111    1 222111    157


Q ss_pred             eEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         108 LSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       108 RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      .+||+++.  |+|||+++++ .|..+.
T Consensus       387 ~iRis~~~--~~~~i~~~~~-~l~~~l  410 (417)
T 3g7q_A          387 CMRMNYVP--EPDKIEAGVK-ILAEEI  410 (417)
T ss_dssp             EEEEESCS--CHHHHHHHHH-HHHHHH
T ss_pred             eEEEEecC--CHHHHHHHHH-HHHHHH
Confidence            89999975  9999999988 776544

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=91.64  E-value=0.63  Score=38.29  Aligned_cols=84  Identities=8%  Similarity=-0.046  Sum_probs=50.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc--------------hHHHhcc-----ccc-cCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF--------------SKVGQTS-----IGL-GVEQ  101 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~--------------~~~~~~a-----~~i-~~Pt  101 (153)
                      .++..++++++..++++.|.+.    ++.....+...++.+.+.+.              ..+.++.     ..+ ..|.
T Consensus       320 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~  399 (429)
T 4e77_A          320 QVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPS  399 (429)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSS
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeec
Confidence            4778999999999999999764    43221112234555555432              1122222     222 2222


Q ss_pred             CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         102 TALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       102 VP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                         +..++  .++..+|+||++++++ +|+.+.+
T Consensus       400 ---~~~~~--~~~~~~t~e~i~~~l~-~l~~~l~  427 (429)
T 4e77_A          400 ---AFEAG--FMSLAHSNEDIQKTVN-AARRCFA  427 (429)
T ss_dssp             ---TTSCE--ECCTTCCHHHHHHHHH-HHHHHHT
T ss_pred             ---CCCCE--EEeccCCHHHHHHHHH-HHHHHHH
Confidence               23444  5579999999999998 7776543

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=91.61  E-value=0.55  Score=38.61  Aligned_cols=83  Identities=4%  Similarity=-0.137  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCC----chHHHhcc----ccc---c--CCCC-----CCCC
Q psy5049          49 RISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFF----FSKVGQTS----IGL---G--VEQT-----ALND  106 (153)
Q Consensus        49 rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~----~~~~~~~a----~~i---~--~PtV-----P~g~  106 (153)
                      .++.++++..++.+.|.+.    |+.+.....+..+.+-+..    .......+    +.+   .  ++..     +.+.
T Consensus       333 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~  412 (444)
T 3if2_A          333 IKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAH  412 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGG
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCC
Confidence            5667777888888887653    4443323335555555543    22222222    111   1  1221     1234


Q ss_pred             ceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         107 GLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       107 ~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      ..+||+++.  |+++|+++++ .|..+.
T Consensus       413 ~~iRis~~~--~~e~i~~~l~-~l~~~~  437 (444)
T 3if2_A          413 ECIRMSIAA--DEQTLIDGIK-VIGEVV  437 (444)
T ss_dssp             SEEEEESSS--CHHHHHHHHH-HHHHHH
T ss_pred             CeEEEEEeC--CHHHHHHHHH-HHHHHH
Confidence            689999997  9999999988 776554

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=91.54  E-value=0.22  Score=43.20  Aligned_cols=88  Identities=11%  Similarity=-0.015  Sum_probs=52.3

Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc-------------hHHHhcc-----ccc-
Q psy5049          41 ICFISGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF-------------SKVGQTS-----IGL-   97 (153)
Q Consensus        41 l~~~~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~-------------~~~~~~a-----~~i-   97 (153)
                      +.-.+.++..++++++..+|+++|+++    ++.....+..-++.|.+.+.             +....+.     ..| 
T Consensus       335 L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~  414 (454)
T 4ao9_A          335 LTKLFTPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIY  414 (454)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEE
T ss_pred             HHHHhccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEE
Confidence            334456889999999999999999754    32110011123444444221             1111111     222 


Q ss_pred             cCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049          98 GVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus        98 ~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                      ..|   .+    ++.++..||+||||++++ +++++...
T Consensus       415 ~~p---~~----~~~~s~~~T~~dId~~l~-al~~~l~~  445 (454)
T 4ao9_A          415 SSP---RG----FVVLSLPLTDADIDRYVA-AIGSFIGG  445 (454)
T ss_dssp             CCT---TC----EEECCTTCCHHHHHHHHH-HHHHHHHH
T ss_pred             EcC---CC----CEEEeCCCCHHHHHHHHH-HHHHHHHh
Confidence            333   22    567899999999999999 88766554

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=91.40  E-value=0.35  Score=38.31  Aligned_cols=79  Identities=9%  Similarity=-0.008  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCccc-CCCCCCeEEEEcCCch-----HHHhcc----ccc---cCCCCCCCCceEEEEe
Q psy5049          48 RRISVLAHNTRYFRRKLNRL-GLIVY-GHRDSPVVPVLVFFFS-----KVGQTS----IGL---GVEQTALNDGLSLYES  113 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~-G~~~~-~~s~SPIiPV~~g~~~-----~~~~~a----~~i---~~PtVP~g~~RlRI~l  113 (153)
                      ++.++..++..++.+.|++. |+.+. ..+.+..+.+.+....     ...+..    +.+   .++.. .|...+|+++
T Consensus       258 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~-~~~~~~r~~i  336 (359)
T 3pj0_A          258 GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKS-ADVCAFEVSV  336 (359)
T ss_dssp             GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEE-TTEEEEEEEC
T ss_pred             HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccC-CCceEEEEEe
Confidence            55667888999999999987 77652 2356777777776431     222222    222   22232 4678999999


Q ss_pred             eCCC---CHHHHHHHHH
Q psy5049         114 SHLR---SANLWNRPHS  127 (153)
Q Consensus       114 sA~H---T~edId~L~~  127 (153)
                      ...+   +.|+++..++
T Consensus       337 ~~~~~~~~~e~l~~~l~  353 (359)
T 3pj0_A          337 GDAFAEIPAKNLELVFR  353 (359)
T ss_dssp             CTTGGGSCHHHHHHHHH
T ss_pred             cCccccCCHHHHHHHHH
Confidence            8775   5556655444

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=91.37  E-value=0.69  Score=38.12  Aligned_cols=83  Identities=7%  Similarity=-0.050  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc-------------hHHHhcc-----ccc-cCCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF-------------SKVGQTS-----IGL-GVEQTA  103 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~-------------~~~~~~a-----~~i-~~PtVP  103 (153)
                      ++.+++++++..++++.|++.    +......+...++.+.+.++             ..+..+.     ..+ ..|   
T Consensus       320 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~---  396 (429)
T 3k28_A          320 PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPP---  396 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCS---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEec---
Confidence            788999999999999999865    32111112345566655321             1112221     222 222   


Q ss_pred             CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         104 LNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       104 ~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      -+..++|+  +..+|+||++++++ +|+.+.+
T Consensus       397 ~~~~~~r~--~~~~t~e~i~~~l~-~l~~~l~  425 (429)
T 3k28_A          397 SQFEGLFL--STVHSDADIEATIA-AAEIAMS  425 (429)
T ss_dssp             STTSCBCC--CTTCCHHHHHHHHH-HHHHHHH
T ss_pred             CCCCCEEE--ECCCCHHHHHHHHH-HHHHHHH
Confidence            24567787  57999999999998 7876654

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=91.18  E-value=1.1  Score=38.72  Aligned_cols=83  Identities=1%  Similarity=-0.139  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE-c--------C-----------Cc-hHHHhcc-------cccc
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL-V--------F-----------FF-SKVGQTS-------IGLG   98 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~-~--------g-----------~~-~~~~~~a-------~~i~   98 (153)
                      .+.+++++++..+|.+.|. .|+... .+++....+. +        +           +. +.+..+.       .+..
T Consensus       413 ~~~~~~~~~r~~~l~~~L~-~~~~~~-~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~  490 (533)
T 3f6t_A          413 DIARKLVSERYDQLHDAMQ-APKDET-DTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGV  490 (533)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-CCCCCS-TTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTE
T ss_pred             HHHHHHHHHHHHHHHHhcC-CCcccc-CCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCc
Confidence            5678888999999999997 776543 2333322111 1        1           11 1111221       2222


Q ss_pred             CCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049          99 VEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus        99 ~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      ++.+|  ...+|+++ +.++++|++++++ .|..+.+
T Consensus       491 ~f~~~--~~~iRls~-a~~~~e~i~~~i~-~L~~~l~  523 (533)
T 3f6t_A          491 GFGAK--PGELRVSQ-ANLPTEDYALIGK-QVLELLK  523 (533)
T ss_dssp             EECSS--TTEEEEES-SSSCHHHHHHHHH-HHHHHHH
T ss_pred             ccCCC--CCEEEEEE-eeCCHHHHHHHHH-HHHHHHH
Confidence            33434  56999999 6689999999988 7765543

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=91.14  E-value=0.94  Score=37.24  Aligned_cols=86  Identities=9%  Similarity=-0.023  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC--CCc-ccCCCCCCeEEEEcCC---chH-HHhcc----ccc---cCCCCC--CCCceEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL--GLI-VYGHRDSPVVPVLVFF---FSK-VGQTS----IGL---GVEQTA--LNDGLSL  110 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~--G~~-~~~~s~SPIiPV~~g~---~~~-~~~~a----~~i---~~PtVP--~g~~RlR  110 (153)
                      .+.+++++++..++.+.|.+.  |+. +...+.+..+.+-+.+   ... +....    +.+   .....+  .+...+|
T Consensus       320 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iR  399 (425)
T 2r2n_A          320 DRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLR  399 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEE
Confidence            456778888889999999874  652 2223445566665543   222 23222    111   111112  3457899


Q ss_pred             EEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         111 YESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       111 I~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      |+++. .|+++++++++ .|+.+.
T Consensus       400 is~~~-~~~~~i~~~~~-~l~~~l  421 (425)
T 2r2n_A          400 ASFSS-ASPEQMDVAFQ-VLAQLI  421 (425)
T ss_dssp             EECSS-CCHHHHHHHHH-HHHHHH
T ss_pred             EEeCC-CCHHHHHHHHH-HHHHHH
Confidence            99985 69999999988 776554

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=91.05  E-value=0.32  Score=40.77  Aligned_cols=85  Identities=2%  Similarity=-0.139  Sum_probs=52.9

Q ss_pred             chHHHHHHH-HHHHHHHHHH-HhCC-Cccc--CCCCCCeEEEEcCCchH-----------HHhcc------ccccCCCCC
Q psy5049          46 GIRRISVLA-HNTRYFRRKL-NRLG-LIVY--GHRDSPVVPVLVFFFSK-----------VGQTS------IGLGVEQTA  103 (153)
Q Consensus        46 ~~~rr~~L~-~ni~~fr~~L-~~~G-~~~~--~~s~SPIiPV~~g~~~~-----------~~~~a------~~i~~PtVP  103 (153)
                      .++..++++ ++..++++.| ..++ +...  ..+...++.+.+.++..           +..+.      ..+..|.  
T Consensus       341 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--  418 (459)
T 4a6r_A          341 DEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC--  418 (459)
T ss_dssp             HTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE--
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecC--
Confidence            467788999 9999999999 5432 1110  11334555665543211           22222      2222232  


Q ss_pred             CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         104 LNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       104 ~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                       | ..+||+++..+|+||++++++ +|+.+.+
T Consensus       419 -g-~~iRi~~~~~~t~e~i~~~l~-~l~~~l~  447 (459)
T 4a6r_A          419 -G-DHIVSAPPLVMTRAEVDEMLA-VAERCLE  447 (459)
T ss_dssp             -T-TEEEECCCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             -C-CEEEEECCCCCCHHHHHHHHH-HHHHHHH
Confidence             3 899999999999999999998 7765543

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=90.91  E-value=0.84  Score=36.88  Aligned_cols=75  Identities=11%  Similarity=-0.035  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCC-CeEEEEc--C-CchHHHhcc--------ccccCCCCCCCCceEEEEee
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDS-PVVPVLV--F-FFSKVGQTS--------IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~S-PIiPV~~--g-~~~~~~~~a--------~~i~~PtVP~g~~RlRI~ls  114 (153)
                      ++.+++++++..++.+.|++.|+.+...... .+.+.+-  + +.....+..        .+..|..    ...+||+++
T Consensus       290 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~----~~~iRis~~  365 (385)
T 1b5p_A          290 EMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAA----FGHVRLSYA  365 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTC----TTEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccCC----CCeEEEEec
Confidence            4577888899999999999888766432222 2333332  1 222222222        2223322    468999987


Q ss_pred             CCCCHHHHHHHHH
Q psy5049         115 HLRSANLWNRPHS  127 (153)
Q Consensus       115 A~HT~edId~L~~  127 (153)
                        +++++|++.++
T Consensus       366 --~~~~~i~~~l~  376 (385)
T 1b5p_A          366 --TSEENLRKALE  376 (385)
T ss_dssp             --SCHHHHHHHHH
T ss_pred             --CCHHHHHHHHH
Confidence              89999988666

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=90.88  E-value=0.84  Score=37.41  Aligned_cols=83  Identities=8%  Similarity=0.017  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEE-EEcCC----chHHHhcc----ccccCCC---CCCCCceEEEEe
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVP-VLVFF----FSKVGQTS----IGLGVEQ---TALNDGLSLYES  113 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiP-V~~g~----~~~~~~~a----~~i~~Pt---VP~g~~RlRI~l  113 (153)
                      ++++++++++..++++.|++. |+.+.. +....+. +-+..    .....+..    .....|.   -+.+...+||++
T Consensus       323 ~~~~~~~~~~~~~l~~~L~~~~~i~~~~-~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~  401 (421)
T 3l8a_A          323 EELKTVIEGNIKLVIKELEAKTKIKVME-PEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNV  401 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSCEEEC-CSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceEeC-CCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEe
Confidence            667888899999999999885 765543 3344443 44432    22222211    1112221   134578999998


Q ss_pred             eCCCCHHHHHHHHHHHHHHH
Q psy5049         114 SHLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~  133 (153)
                      .  +++++|+++++ .|+.+
T Consensus       402 ~--~~~~~i~~~l~-~l~~~  418 (421)
T 3l8a_A          402 A--TPKNTVQEALS-RIISV  418 (421)
T ss_dssp             C--SCHHHHHHHHH-HHHHH
T ss_pred             c--CCHHHHHHHHH-HHHHH
Confidence            8  69999999887 66554

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=90.83  E-value=0.28  Score=39.94  Aligned_cols=79  Identities=11%  Similarity=-0.031  Sum_probs=51.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC----CcccCCCCCCeEEEEcCCc-hHHHhcc---ccccCCCCCCCCceEEEEeeCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG----LIVYGHRDSPVVPVLVFFF-SKVGQTS---IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G----~~~~~~s~SPIiPV~~g~~-~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      ..+.+++++++..++.+.|++.|    +.+.. +.+.++ ++++-+ ..+..+.   .....|       .+||+++. +
T Consensus       323 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~~~gi~v~~-------~~Ris~~~-~  392 (412)
T 1yaa_A          323 MVTMSSRITKMRHALRDHLVKLGTPGNWDHIV-NQCGMF-SFTGLTPQMVKRLEETHAVYLVA-------SGRASIAG-L  392 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHH-HCCSSE-EECCCCHHHHHHHHHHHCEECCT-------TSEEEGGG-C
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCeeeec-cCceEE-EeeCCCHHHHHHHHHhCCEEecc-------CcEEEEcc-C
Confidence            45678888999999999999876    65432 334443 344432 3332222   222223       47999985 6


Q ss_pred             CHHHHHHHHHHHHHHHHh
Q psy5049         118 SANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       118 T~edId~L~~~~L~~~~~  135 (153)
                      |++|++++++ +|+.+.+
T Consensus       393 ~~~~i~~~~~-~l~~~~~  409 (412)
T 1yaa_A          393 NQGNVEYVAK-AIDEVVR  409 (412)
T ss_dssp             CTTTHHHHHH-HHHHHHH
T ss_pred             CHhHHHHHHH-HHHHHHH
Confidence            9999999998 8876654

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=90.70  E-value=1.7  Score=35.90  Aligned_cols=86  Identities=8%  Similarity=0.008  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE-------cCC----chHH-Hhc-c---ccccC---------CC-
Q psy5049          48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL-------VFF----FSKV-GQT-S---IGLGV---------EQ-  101 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~-------~g~----~~~~-~~~-a---~~i~~---------Pt-  101 (153)
                      +..++..++..++++.|.+.|+.+.....+..+.+-       +..    .... ..+ .   ..+.+         |. 
T Consensus       323 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~  402 (467)
T 1ax4_A          323 EYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPAT  402 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTT
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCcccccccccc
Confidence            355556688899999999878765433445555554       211    1111 112 1   11111         10 


Q ss_pred             ---CCCCCceEEEEeeC-CCCHHHHHHHHHHHHHHHH
Q psy5049         102 ---TALNDGLSLYESSH-LRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       102 ---VP~g~~RlRI~lsA-~HT~edId~L~~~~L~~~~  134 (153)
                         .+.+...+||++.. .+|++|++++++ +|+.+.
T Consensus       403 g~~~~~~~~~iRls~~~~~~t~e~i~~~~~-~l~~~~  438 (467)
T 1ax4_A          403 GEQKHADMEFMRLTIARRVYTNDHMDYIAD-ALIGLK  438 (467)
T ss_dssp             CSBCCCSCCEEEEECCTTSSCHHHHHHHHH-HHHTTH
T ss_pred             ccccccccceEEEecccccCCHHHHHHHHH-HHHHHH
Confidence               12235789999995 499999999998 776544

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=90.46  E-value=0.5  Score=40.32  Aligned_cols=49  Identities=8%  Similarity=-0.077  Sum_probs=42.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC-----eEEEEcCCchHHHhcc
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSP-----VVPVLVFFFSKVGQTS   94 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SP-----IiPV~~g~~~~~~~~a   94 (153)
                      ..+.+++++++|+.++.+.|.+.|+.+. .+.++     |++|.+++++++.+++
T Consensus       296 ~~~~r~~~~~~~a~~la~~L~~~g~~V~-p~~~~~~~~~i~~i~l~~~~~~~~f~  349 (427)
T 3i16_A          296 LAPHISMEALKGAILCSRIMELAGFEVM-PKYDEKRSDIIQSIKFNDKDKLIEFC  349 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEE-SCTTSCCSSSCEEEECSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCeec-CCCCCCCccEEEEEEECCHHHHHHHH
Confidence            3478999999999999999999999874 35677     9999999988887775

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=90.42  E-value=0.37  Score=38.79  Aligned_cols=76  Identities=5%  Similarity=-0.173  Sum_probs=46.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcC-CchHHHhcc---ccccCCCCCCCCceEEEEeeCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVF-FFSKVGQTS---IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g-~~~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      ..+++++++++..++.+.|.+.    |+.+.. +.+..+ ++++ +.+.+....   .....|.   +    ||++ +.+
T Consensus       312 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~~~gi~v~~g---~----Ris~-~~~  381 (397)
T 3fsl_A          312 VEEMRTRILAMRQELVKVLSTEMPERNFDYLL-NQRGMF-SYTGLSAAQVDRLREEFGVYLIAS---G----RMCV-AGL  381 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHH-HCCSSE-EECCCCHHHHHHHHHTTCEECCTT---C----EEEG-GGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCceeec-CCceEE-EecCCCHHHHHHHHHhCCEEECCC---C----eEEE-Eec
Confidence            3677889999999999999987    565432 223333 3333 233333332   2223333   2    8888 456


Q ss_pred             CHHHHHHHHHHHHHH
Q psy5049         118 SANLWNRPHSPSLMA  132 (153)
Q Consensus       118 T~edId~L~~~~L~~  132 (153)
                      |++||+++++ +|+.
T Consensus       382 ~~~~i~~~~~-~l~~  395 (397)
T 3fsl_A          382 NTANVQRVAK-AFAA  395 (397)
T ss_dssp             CTTTHHHHHH-HHHH
T ss_pred             CHhhHHHHHH-HHHh
Confidence            8889999888 6654

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=90.33  E-value=0.71  Score=38.41  Aligned_cols=84  Identities=10%  Similarity=0.023  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC-----------------c-hHHHh-cc----ccc----cC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF-----------------F-SKVGQ-TS----IGL----GV   99 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~-----------------~-~~~~~-~a----~~i----~~   99 (153)
                      .+.+++++++..++.+.|.+.|+.+.....+..+-+-+..                 + ..... +.    +.+    .|
T Consensus       330 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f  409 (447)
T 3b46_A          330 EKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEF  409 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHh
Confidence            4578889999999999999888876432323443333321                 1 11221 11    111    12


Q ss_pred             CC---CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049         100 EQ---TALNDGLSLYESSHLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       100 Pt---VP~g~~RlRI~lsA~HT~edId~L~~~~L~~~  133 (153)
                      ..   ++.+...+||++..  ++|+|+..++ .|..+
T Consensus       410 ~~~~~~~~~~~~iRls~~~--~~e~l~~~~~-~l~~~  443 (447)
T 3b46_A          410 YIKEHEKAAENLLRFAVCK--DDAYLENAVE-RLKLL  443 (447)
T ss_dssp             SCGGGGGGGTTEEEEECCS--CHHHHHHHHH-HGGGG
T ss_pred             CCCCccCCCCCEEEEEEeC--CHHHHHHHHH-HHHHH
Confidence            11   12246789999974  8999999877 66543

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=90.30  E-value=2  Score=34.41  Aligned_cols=84  Identities=10%  Similarity=-0.030  Sum_probs=51.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHh-C-CCcccCCCCCCeE-EEEcCC----chHHHhcc-----ccccCCCC---CCCCceEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNR-L-GLIVYGHRDSPVV-PVLVFF----FSKVGQTS-----IGLGVEQT---ALNDGLSLY  111 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~-~-G~~~~~~s~SPIi-PV~~g~----~~~~~~~a-----~~i~~PtV---P~g~~RlRI  111 (153)
                      ++.+++++++..++.+.|.+ . |+.+.. +.+..+ .+-+.+    .....+..     +.+ .|..   +.+...+||
T Consensus       293 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v-~~g~~~~~~~~~~iRi  370 (399)
T 1c7n_A          293 DGCIKVIDKNQRIVKDFFEVNHPEIKAPL-IEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFF-DEGYIFGDGGIGFERI  370 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTSBCCC-CSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCC-EEGGGGCGGGTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCeEec-CCceEEEEEEcccCCCCHHHHHHHHHHhCCEEE-eCccccCCCCCCeEEE
Confidence            56677889999999999987 5 765532 444443 455542    22222211     222 2211   235678999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         112 ESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       112 ~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      +++..  +++|+++++ .+..+.+
T Consensus       371 s~~~~--~~~l~~~l~-~l~~~l~  391 (399)
T 1c7n_A          371 NLAAP--SSVIQESLE-RLNKALK  391 (399)
T ss_dssp             ECCSC--HHHHHHHHH-HHHHHHH
T ss_pred             EeccC--HHHHHHHHH-HHHHHHH
Confidence            99865  899999888 6655443

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=90.08  E-value=2.3  Score=34.05  Aligned_cols=84  Identities=11%  Similarity=-0.037  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHh-C-CCcccCCCCCCeE-EEEcCC----chHHHhcc----ccccCCCC---CCCCceEEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNR-L-GLIVYGHRDSPVV-PVLVFF----FSKVGQTS----IGLGVEQT---ALNDGLSLYE  112 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~-~-G~~~~~~s~SPIi-PV~~g~----~~~~~~~a----~~i~~PtV---P~g~~RlRI~  112 (153)
                      ++.+++++++..++.+.|.+ . |+.+.. +.++.+ .+-+.+    ........    .....|..   +.+...+||+
T Consensus       289 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris  367 (390)
T 1d2f_A          289 DALRIYLKDNLTYIADKMNAAFPELNWQI-PQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLN  367 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSCCCCC-CSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCEEec-CCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEE
Confidence            56778889999999999987 4 766533 444443 455532    22222211    11111211   2346789999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHH
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~  134 (153)
                      ++.  ++++++..++ .++.+.
T Consensus       368 ~~~--~~~~l~~~l~-~l~~~l  386 (390)
T 1d2f_A          368 AGC--PRSKLEKGVA-GLINAI  386 (390)
T ss_dssp             CCS--CHHHHHHHHH-HHHHHH
T ss_pred             ecC--CHHHHHHHHH-HHHHHH
Confidence            987  5889999887 665443

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=89.91  E-value=2.3  Score=34.74  Aligned_cols=85  Identities=11%  Similarity=-0.022  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHh----C-CCcccCCCCCCeEEEEcCC--chHHHhcc----c-----cccCCC-CCCCCceEE
Q psy5049          48 RRISVLAHNTRYFRRKLNR----L-GLIVYGHRDSPVVPVLVFF--FSKVGQTS----I-----GLGVEQ-TALNDGLSL  110 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~----~-G~~~~~~s~SPIiPV~~g~--~~~~~~~a----~-----~i~~Pt-VP~g~~RlR  110 (153)
                      +.++.++++..++.+.|.+    . ++.+.....+..+.+-+.+  .....+..    +     ...|+. .+.+...+|
T Consensus       316 ~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~R  395 (427)
T 3ppl_A          316 KHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLR  395 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEE
Confidence            4455566666666666643    2 3433222334556666653  22332222    1     222332 234678999


Q ss_pred             EEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         111 YESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       111 I~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      |++.. .|+++|+..++ .|..+.
T Consensus       396 is~~~-~~~~~i~~~~~-~l~~~l  417 (427)
T 3ppl_A          396 LAPSL-PPVEELEVAMD-GVATCV  417 (427)
T ss_dssp             ECCSS-SCHHHHHHHHH-HHHHHH
T ss_pred             EECCC-CCHHHHHHHHH-HHHHHH
Confidence            99954 49999999888 776554

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=89.55  E-value=0.51  Score=40.27  Aligned_cols=49  Identities=8%  Similarity=-0.051  Sum_probs=41.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC-----eEEEEcCCchHHHhcc
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSP-----VVPVLVFFFSKVGQTS   94 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SP-----IiPV~~g~~~~~~~~a   94 (153)
                      ..+.+++++++|+.++.+.|.+.|+.+. .+.++     |++|.+++++++.+++
T Consensus       296 ~~~~r~~~~~~~a~~la~~L~~~g~~V~-p~~~~~~~~li~~~~l~~~~~~~~f~  349 (427)
T 3hvy_A          296 MAPHVTIEAVKGAVFCARIMELAGFDVL-PKYNDKRTDIIQAIKFNDEKKLIDFI  349 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEE-SCTTSCCSSSEEEEECSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCeec-CCCCCCCceEEEEEeCCCHHHHHHHH
Confidence            3478999999999999999999999874 34666     9999999988887776

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=89.51  E-value=0.73  Score=37.80  Aligned_cols=80  Identities=5%  Similarity=-0.081  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCC-------------CeEEEEcCCchHHHhcc--------ccccCCCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDS-------------PVVPVLVFFFSKVGQTS--------IGLGVEQTAL  104 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~S-------------PIiPV~~g~~~~~~~~a--------~~i~~PtVP~  104 (153)
                      .+.++.++++..++.+.|++. |+.+.....+             ..+-+-+.+.+.+....        .+..|..   
T Consensus       281 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~---  357 (391)
T 3bwn_A          281 KYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKVMSRAGERCGS---  357 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTEECEEGGGGTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCEEEccCCCCCC---
Confidence            567888999999999999987 4433211111             13333344333333222        1222211   


Q ss_pred             CCceEEEEeeCCCCHHHHHHHHHHHHHH
Q psy5049         105 NDGLSLYESSHLRSANLWNRPHSPSLMA  132 (153)
Q Consensus       105 g~~RlRI~lsA~HT~edId~L~~~~L~~  132 (153)
                      +...+||+++.  ++|+++++++ .|..
T Consensus       358 ~~~~iRis~~~--~~e~i~~~~~-~L~~  382 (391)
T 3bwn_A          358 DKKHVRVSMLS--REDVFNVFLE-RLAN  382 (391)
T ss_dssp             CTTEEEEESCS--CHHHHHHHHH-HHHS
T ss_pred             CCCEEEEEecC--CHHHHHHHHH-HHHH
Confidence            46789999984  8999999877 6654

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=89.50  E-value=1.3  Score=36.27  Aligned_cols=84  Identities=11%  Similarity=-0.037  Sum_probs=49.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC----CcccCCCCCCeEEEEcCCc-------------hHHHhcc-----ccc-cCCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG----LIVYGHRDSPVVPVLVFFF-------------SKVGQTS-----IGL-GVEQT  102 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G----~~~~~~s~SPIiPV~~g~~-------------~~~~~~a-----~~i-~~PtV  102 (153)
                      .++.+++++++..++++.|.+.+    +.....+...++.+.+.+.             ..+..+.     ..+ ..|. 
T Consensus       319 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~-  397 (427)
T 3fq8_A          319 QPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPS-  397 (427)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSS-
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecC-
Confidence            46789999999999999998642    2111112234554444321             1111221     222 2222 


Q ss_pred             CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         103 ALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       103 P~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                        +..  |++++..+|+||++++++ +|+.+.+
T Consensus       398 --~~~--r~~~~~~~t~e~i~~~l~-~l~~~l~  425 (427)
T 3fq8_A          398 --QFE--AGFTSLAHTEEDIDATLA-AARTVMS  425 (427)
T ss_dssp             --TTS--CEECCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             --CCC--CEEeeCcCCHHHHHHHHH-HHHHHHH
Confidence              222  677889999999999998 7776543

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=89.28  E-value=0.73  Score=38.24  Aligned_cols=89  Identities=10%  Similarity=-0.072  Sum_probs=56.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC---------------CcccC---CCCCCeEEEEcCCc-hHHHhcc----c-------
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG---------------LIVYG---HRDSPVVPVLVFFF-SKVGQTS----I-------   95 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G---------------~~~~~---~s~SPIiPV~~g~~-~~~~~~a----~-------   95 (153)
                      .+.+.+++.+|+..+.+.+.+..               +.+..   .+.++++.+.+.+. +.+.++.    .       
T Consensus       263 l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~  342 (403)
T 3cog_A          263 LHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESL  342 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCC
Confidence            35577888888888888877651               11100   12367888877543 3333332    1       


Q ss_pred             -----cccCCC------CC--------CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049          96 -----GLGVEQ------TA--------LNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus        96 -----~i~~Pt------VP--------~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                           .+.+|+      +|        .+.+.+|+++...+++++|+.+.+ +|+.+.+
T Consensus       343 G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~-al~~~~~  400 (403)
T 3cog_A          343 GGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQ-ALKAAHP  400 (403)
T ss_dssp             SSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHH-HHHHHCC
T ss_pred             CCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHH-HHHHhhc
Confidence                 123442      22        126799999999999999999988 7776544

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=88.75  E-value=0.7  Score=37.32  Aligned_cols=77  Identities=5%  Similarity=-0.109  Sum_probs=45.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC----CcccCCCCCCeEEEEcCCc-hHHHhcc---ccccCCCCCCCCceEEEEeeCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG----LIVYGHRDSPVVPVLVFFF-SKVGQTS---IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G----~~~~~~s~SPIiPV~~g~~-~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      ..+.+++++++..++.+.|.+.|    +.+. .+....+ ++++-+ +.+..+.   .....|       .+||++++ +
T Consensus       315 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~~-------~~Ris~~~-~  384 (401)
T 7aat_A          315 VKGMADRIISMRTQLVSNLKKEGSSHNWQHI-TDQIGMF-CFTGLKPEQVERLTKEFSIYMTK-------DGRISVAG-V  384 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCSCCHHH-HHCCSSE-EECCCCHHHHHHHHHHHCEECCT-------TCEEEGGG-C
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCcee-cCCcceE-EecCCCHHHHHHHHHhCCEeccC-------CCeEEecc-C
Confidence            35667889999999999999886    3321 1223332 333332 3333332   122222       26999976 5


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy5049         118 SANLWNRPHSPSLMAV  133 (153)
Q Consensus       118 T~edId~L~~~~L~~~  133 (153)
                      |++||+++++ +++.+
T Consensus       385 ~~~~i~~~~~-~l~~~  399 (401)
T 7aat_A          385 ASSNVGYLAH-AIHQV  399 (401)
T ss_dssp             CTTTHHHHHH-HHHHH
T ss_pred             ChhhHHHHHH-HHHHH
Confidence            5556999988 77654

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=88.64  E-value=1.6  Score=35.78  Aligned_cols=88  Identities=8%  Similarity=-0.076  Sum_probs=53.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCC---CcccCC---CCCC-eEEEEcCC---chHHHhcc------ccccCC-CCCC---
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLG---LIVYGH---RDSP-VVPVLVFF---FSKVGQTS------IGLGVE-QTAL---  104 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G---~~~~~~---s~SP-IiPV~~g~---~~~~~~~a------~~i~~P-tVP~---  104 (153)
                      .-+++.++.++|..++.+.|.+.+   ......   ...+ .+++.+.+   .+...+..      ..+.|| .+..   
T Consensus       249 ~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~  328 (377)
T 3ju7_A          249 KWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVL  328 (377)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCccccchh
Confidence            346777888899999999999876   222111   1122 45777664   23333322      222332 1111   


Q ss_pred             ---------------CCceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049         105 ---------------NDGLSLYESSHLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       105 ---------------g~~RlRI~lsA~HT~edId~L~~~~L~~~  133 (153)
                                     ....+|+.++...|+||++++++ +++.+
T Consensus       329 ~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~-~l~~~  371 (377)
T 3ju7_A          329 FRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVI-CLGQK  371 (377)
T ss_dssp             GTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHH-HHTC-
T ss_pred             hhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHH-HHHHH
Confidence                           14579999999999999999888 66543

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=88.51  E-value=1.4  Score=36.59  Aligned_cols=81  Identities=7%  Similarity=-0.151  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccC------------------CCCCCeEEEEcCCc-hHHHhcc------------
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYG------------------HRDSPVVPVLVFFF-SKVGQTS------------   94 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~------------------~s~SPIiPV~~g~~-~~~~~~a------------   94 (153)
                      .++.+++.+|..++.+.|.+. ++....                  .+.++|+++.+.+. +.+..+.            
T Consensus       288 ~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l~~~~~~~~~  367 (421)
T 2ctz_A          288 SLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANV  367 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCC
T ss_pred             HHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHhCCcceecccC
Confidence            456788889999999999875 332211                  23478999998763 3333322            


Q ss_pred             ----ccccCCCCCC--------------CCceEEEEeeCCCCHHHHHHHHH
Q psy5049          95 ----IGLGVEQTAL--------------NDGLSLYESSHLRSANLWNRPHS  127 (153)
Q Consensus        95 ----~~i~~PtVP~--------------g~~RlRI~lsA~HT~edId~L~~  127 (153)
                          ..+.+|+.+.              ..+.+|++++..+.++.|+.+.+
T Consensus       368 G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~e~~~~li~~l~~  418 (421)
T 2ctz_A          368 GDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKE  418 (421)
T ss_dssp             CCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHH
T ss_pred             CCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHH
Confidence                1223443221              24899999987655555555443

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=87.84  E-value=0.85  Score=37.39  Aligned_cols=76  Identities=7%  Similarity=-0.095  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcC-CchHHHhcc---ccccCCCCCCCCceEEEEeeCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVF-FFSKVGQTS---IGLGVEQTALNDGLSLYESSHLRS  118 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g-~~~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~HT  118 (153)
                      ++.+++++++..++.+.|++.    |+.... +....+ ++++ +.+.+....   .....|.       .|+++. .+|
T Consensus       335 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~l~~~gI~v~~~-------~Ris~~-~~~  404 (420)
T 4f4e_A          335 GEMRDRIRAMRNGLVERLKAAGIERDFSFIN-AQRGMF-SYSGLTSAQVDRLREEFGIYAVST-------GRICVA-ALN  404 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSSCCTHHH-HSCSSE-EECCCCHHHHHHHHHHHCEECCTT-------SEEEGG-GCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCceeEC-CCccEE-EEeCCCHHHHHHHHHhCCEEecCC-------CeEEEe-cCC
Confidence            677889999999999999987    554422 223332 3333 333333332   2223332       288884 568


Q ss_pred             HHHHHHHHHHHHHHH
Q psy5049         119 ANLWNRPHSPSLMAV  133 (153)
Q Consensus       119 ~edId~L~~~~L~~~  133 (153)
                      +++|+++++ +|+.+
T Consensus       405 ~~~i~~~~~-~l~~~  418 (420)
T 4f4e_A          405 TRNLDVVAN-AIAAV  418 (420)
T ss_dssp             TTTHHHHHH-HHHHH
T ss_pred             HHHHHHHHH-HHHHH
Confidence            889999888 77654

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=87.70  E-value=0.51  Score=37.97  Aligned_cols=77  Identities=10%  Similarity=-0.108  Sum_probs=47.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCC----CcccCCCCCCeEEEEcCCc-hHHHhcc---ccccCCCCCCCCceEEEEeeCCC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLG----LIVYGHRDSPVVPVLVFFF-SKVGQTS---IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G----~~~~~~s~SPIiPV~~g~~-~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      .++.+++++++..++.+.|.+.|    +.+.. +....+ +++.-+ +.+....   .....|.       +||+++ .+
T Consensus       308 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~l~~~gi~v~~~-------~Ris~~-~~  377 (394)
T 2ay1_A          308 LEAVRSGMLRLREQLAGELRDLSGSDRFGFVA-EHRGMF-SRLGATPEQVKRIKEEFGIYMVGD-------SRINIA-GL  377 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHH-HCCSSE-EECCCCHHHHHHHHHHHCEECCTT-------CEEEGG-GC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEc-CCceEE-EeeCCCHHHHHHHHHhCCEEecCC-------CeEEee-cC
Confidence            35678888899999999998775    44322 222333 344333 2232222   2223332       699988 58


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy5049         118 SANLWNRPHSPSLMAV  133 (153)
Q Consensus       118 T~edId~L~~~~L~~~  133 (153)
                      |++|++++++ +++.+
T Consensus       378 ~~~~i~~~~~-~l~~~  392 (394)
T 2ay1_A          378 NDNTIPILAR-AIIEV  392 (394)
T ss_dssp             CTTTHHHHHH-HHHHH
T ss_pred             CHhhHHHHHH-HHHHc
Confidence            9999999888 76654

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=87.46  E-value=0.74  Score=37.30  Aligned_cols=78  Identities=6%  Similarity=-0.093  Sum_probs=49.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCC----CcccCCCCCCeEEEEcCCc-hHHHhcc---ccccCCCCCCCCceEEEEeeCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLG----LIVYGHRDSPVVPVLVFFF-SKVGQTS---IGLGVEQTALNDGLSLYESSHLRS  118 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G----~~~~~~s~SPIiPV~~g~~-~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~HT  118 (153)
                      ++.+++++++..++.+.|.+.|    +.+.. +....+ ++++-+ +.+....   .....|.       +||+++. +|
T Consensus       324 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~~~gv~v~~~-------~Ris~~~-~~  393 (412)
T 1ajs_A          324 KTMADRILSMRSELRARLEALKTPGTWNHIT-DQIGMF-SFTGLNPKQVEYLINQKHIYLLPS-------GRINMCG-LT  393 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSSCCHHHH-HCCSSE-EECCCCHHHHHHHHHTTCEECCTT-------SEEEGGG-CC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCeeEEc-CCCceE-EEeCCCHHHHHHHHHhCCEEecCC-------cEEEeee-CC
Confidence            5678899999999999999887    54322 223333 233322 2222222   2223332       6999884 59


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy5049         119 ANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       119 ~edId~L~~~~L~~~~~  135 (153)
                      ++|++++++ .|+.+.+
T Consensus       394 ~~~i~~~~~-~l~~~l~  409 (412)
T 1ajs_A          394 TKNLDYVAT-SIHEAVT  409 (412)
T ss_dssp             TTTHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHH
Confidence            999999998 7776543

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=87.16  E-value=2.2  Score=35.58  Aligned_cols=81  Identities=11%  Similarity=-0.017  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCcc--cC-C----------CC-CCeEEEEcCC-ch-HHHhcc--------ccccCCCC
Q psy5049          48 RRISVLAHNTRYFRRKLNRL-GLIV--YG-H----------RD-SPVVPVLVFF-FS-KVGQTS--------IGLGVEQT  102 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~-G~~~--~~-~----------s~-SPIiPV~~g~-~~-~~~~~a--------~~i~~PtV  102 (153)
                      +.+++++++..++.+.|++. |+.+  .. .          ++ +..+-+-+.. .. .+..+.        .+..|+. 
T Consensus       317 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~-  395 (427)
T 2hox_A          317 FGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEA-  395 (427)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTS-
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCCCccCC-
Confidence            46788999999999999987 6543  11 0          11 2333333432 11 111111        3334543 


Q ss_pred             CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049         103 ALNDGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       103 P~g~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                        +...+||++..  ++++|+..++ .|..+.
T Consensus       396 --~~~~~Ris~~~--~~e~l~~~l~-~l~~~~  422 (427)
T 2hox_A          396 --SSRYVRLSLIK--TQDDFDQLMY-YLKDMV  422 (427)
T ss_dssp             --CTTEEEEECSS--CHHHHHHHHH-HHHHHH
T ss_pred             --CCCEEEEEecC--CHHHHHHHHH-HHHHHH
Confidence              56889999985  8999999887 666554

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=86.45  E-value=0.62  Score=37.40  Aligned_cols=75  Identities=8%  Similarity=0.003  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCC----CcccCCCCCCeEEEEcCCc-hHHHhcc---ccccCCCCCCCCceEEEEeeCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLG----LIVYGHRDSPVVPVLVFFF-SKVGQTS---IGLGVEQTALNDGLSLYESSHLRS  118 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G----~~~~~~s~SPIiPV~~g~~-~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~HT  118 (153)
                      ++.+++++++..++.+.|++.|    +.+. .+.+.++ +++.-+ +.+....   .....|       .+||+++. .|
T Consensus       312 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~~~gv~v~~-------~~Ris~~~-~~  381 (396)
T 2q7w_A          312 TDMRQRIQRMRQLFVNTLQEKGANRDFSFI-IKQNGMF-SFSGLTKEQVLRLREEFGVYAVA-------SGRVNVAG-MT  381 (396)
T ss_dssp             HHC-CHHHHHHHHHHHHHHHTTCCSCCTHH-HHCCSSE-EECCCCHHHHHHHHHHHCEECCT-------TCEEEGGG-CC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCccee-cCCCceE-EEecCCHHHHHHHHHhcCeeecC-------CceEEEee-cC
Confidence            4567888999999999999887    5432 2334444 444433 2222222   222333       26999985 49


Q ss_pred             HHHHHHHHHHHHHH
Q psy5049         119 ANLWNRPHSPSLMA  132 (153)
Q Consensus       119 ~edId~L~~~~L~~  132 (153)
                      +||++++++ +|+.
T Consensus       382 ~e~i~~~~~-~l~~  394 (396)
T 2q7w_A          382 PDNMAPLCE-AIVA  394 (396)
T ss_dssp             TTTHHHHHH-HHHH
T ss_pred             HHHHHHHHH-HHHh
Confidence            999999888 6654

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=86.25  E-value=3.2  Score=34.76  Aligned_cols=85  Identities=7%  Similarity=-0.091  Sum_probs=56.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCC-c-c-c-C--------------CCCCCeEEEEcCC---chHHHhcc----------
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGL-I-V-Y-G--------------HRDSPVVPVLVFF---FSKVGQTS----------   94 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~-~-~-~-~--------------~s~SPIiPV~~g~---~~~~~~~a----------   94 (153)
                      .+.+.++..+|+.++.+.|.+... . + . +              .+..+|+++.+.+   .+.+..+.          
T Consensus       279 l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~  358 (415)
T 2fq6_A          279 LGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAY  358 (415)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEec
Confidence            366788889999999999987531 0 0 0 0              0246899999975   34444432          


Q ss_pred             ------ccccC--CCCC--------C--CCceEEEEeeCCCCHHHHHHHHHHHHH
Q psy5049          95 ------IGLGV--EQTA--------L--NDGLSLYESSHLRSANLWNRPHSPSLM  131 (153)
Q Consensus        95 ------~~i~~--PtVP--------~--g~~RlRI~lsA~HT~edId~L~~~~L~  131 (153)
                            ..+..  |+.+        .  ..+.+|+++...+++++|+.+.+ +|+
T Consensus       359 s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~-al~  412 (415)
T 2fq6_A          359 SWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDA-GFA  412 (415)
T ss_dssp             CCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHH-HHH
T ss_pred             cCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHH-HHH
Confidence                  11122  3111        2  24789999999999999999888 665

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=85.25  E-value=4  Score=33.43  Aligned_cols=83  Identities=17%  Similarity=0.072  Sum_probs=53.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCc--cc--C--------------CCCCCeEEEEcCCc-hHHHhcc-------------
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLI--VY--G--------------HRDSPVVPVLVFFF-SKVGQTS-------------   94 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~--~~--~--------------~s~SPIiPV~~g~~-~~~~~~a-------------   94 (153)
                      ..+.+++.+|..++.+.|.+....  +.  +              .+...++.+-+.++ ..+..+.             
T Consensus       263 ~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G  342 (392)
T 3qhx_A          263 VLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLG  342 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCC
Confidence            567888999999999999865321  10  0              01145888888652 3333321             


Q ss_pred             ---ccccCCCCC-----------CCCceEEEEeeCCCCHHHHHHHHHHHH
Q psy5049          95 ---IGLGVEQTA-----------LNDGLSLYESSHLRSANLWNRPHSPSL  130 (153)
Q Consensus        95 ---~~i~~PtVP-----------~g~~RlRI~lsA~HT~edId~L~~~~L  130 (153)
                         ..+.+|.+.           ...+.+|++++..+++++|+.+.+ +|
T Consensus       343 ~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~-al  391 (392)
T 3qhx_A          343 SVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQ-AL  391 (392)
T ss_dssp             CSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHH-HH
T ss_pred             CCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHH-Hh
Confidence               122344322           346789999999999999999877 54

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=85.21  E-value=1.3  Score=37.20  Aligned_cols=79  Identities=13%  Similarity=-0.058  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC--CchHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHHH
Q psy5049          49 RISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF--FFSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANLW  122 (153)
Q Consensus        49 rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g--~~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~edI  122 (153)
                      ..++..++..++++.    |+.+.+..+...+.+.+.  +.....+..    ..+..+    |...+|++++..+|++|+
T Consensus       269 ~~~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~----g~~~iRi~~~~~~t~e~i  340 (446)
T 2x3l_A          269 FFAKRAQLIECLENK----GFEMLQVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLELA----DDYQALAILPLWHHDDTY  340 (446)
T ss_dssp             HHHHHHHHHHHHHHH----TCEEEECSSTTEEEEECTTSCHHHHHHHHHHTTEEESEE----CSSCEEEECCCCCTTCCC
T ss_pred             HHHHHHHHHHHHHHc----CCEECcCCCCeEEEEEeCCcCHHHHHHHHHHCCCEEEec----CCCEEEEEeecCCCHHHH
Confidence            666777777777666    776643222224555553  122333222    333323    457899999999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q psy5049         123 NRPHSPSLMAVFRGG  137 (153)
Q Consensus       123 d~L~~~~L~~~~~~~  137 (153)
                       ++++ +|+.+.+..
T Consensus       341 -~l~~-aL~~~~~~~  353 (446)
T 2x3l_A          341 -LFDS-LLRKIEDMI  353 (446)
T ss_dssp             -CHHH-HHHHHHTCC
T ss_pred             -HHHH-HHHHHHHhh
Confidence             9999 888877654

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=83.57  E-value=3.4  Score=33.72  Aligned_cols=84  Identities=7%  Similarity=-0.033  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCC---------ccc---------CCCCCCeEEEEcCCchHHHhcc-------cc-----
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGL---------IVY---------GHRDSPVVPVLVFFFSKVGQTS-------IG-----   96 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~---------~~~---------~~s~SPIiPV~~g~~~~~~~~a-------~~-----   96 (153)
                      +.+.++..+|...+.+.|.+.+.         .-.         ..+..+++.+.+.+.+.+..+.       .+     
T Consensus       256 ~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~l~~~~i~~~~~s~G~  335 (389)
T 3acz_A          256 PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHLKVCTLAVSLGC  335 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSHHHHHHHHTTCSSSEEBSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECCHHHHHHHHHhCCCcEECcCCCC
Confidence            56778888999999999987531         100         0123678888886544444332       11     


Q ss_pred             ----ccCCCCCC------------C--CceEEEEeeCCCCHHHHHHHHHHHHH
Q psy5049          97 ----LGVEQTAL------------N--DGLSLYESSHLRSANLWNRPHSPSLM  131 (153)
Q Consensus        97 ----i~~PtVP~------------g--~~RlRI~lsA~HT~edId~L~~~~L~  131 (153)
                          +.+|+.+.            |  ...+|+++...++++.|+.+.+ +|+
T Consensus       336 ~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~-al~  387 (389)
T 3acz_A          336 VDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQ-ALE  387 (389)
T ss_dssp             SSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHH-HHT
T ss_pred             cccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHH-HHh
Confidence                14454332            1  5799999999998888888776 553

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=82.21  E-value=3.3  Score=37.81  Aligned_cols=31  Identities=16%  Similarity=0.103  Sum_probs=27.8

Q ss_pred             CCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         105 NDGLSLYESSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       105 g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                      +...+|+++|...|++++++|++ +|..+.+.
T Consensus       574 ~~~~v~~~~~~g~t~~~~~~l~~-al~~~~~~  604 (755)
T 2vyc_A          574 TDFQIMFLFSMGVTRGKWGTLVN-TLCSFKRH  604 (755)
T ss_dssp             CSSEEEEECCTTCCTTTTHHHHH-HHHHHHHH
T ss_pred             CCCeEEEEECCCCCHHHHHHHHH-HHHHHHHh
Confidence            57899999999999999999999 88887654

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=80.28  E-value=3.2  Score=35.04  Aligned_cols=49  Identities=8%  Similarity=-0.083  Sum_probs=40.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC-----eEEEEcCCchHHHhcc
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSP-----VVPVLVFFFSKVGQTS   94 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SP-----IiPV~~g~~~~~~~~a   94 (153)
                      ..+.+++++++|+.++.+.|++.|+.+.. +.++     |++|.+++.+++.+++
T Consensus       285 ~~~~~~~~~~~~a~~l~~~L~~~g~~v~p-~~~~~~~~li~~i~l~~~~~~~~~~  338 (431)
T 3ht4_A          285 LAPHVAGQALKGAIFTAAFLEKLGMNTSP-AWNAPRTDLIQSVQFDDKDRMIAFC  338 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCEES-CTTSCCSSSCCEEECCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCcCEecC-CCCCCCccEEEEEEeCCHHHHHHHH
Confidence            34778999999999999999999997743 3555     9999999887777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	153
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.84
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.79
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.75
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	98.6
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	98.46
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	97.56
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	96.8
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	96.68
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	96.36
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	96.25
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	96.05
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	95.89
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	95.72
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	95.66
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	95.53
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	95.51
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	95.5
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	95.09
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	95.05
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	95.02
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	94.45
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	94.37
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	94.33
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	94.24
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	94.1
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	93.76
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	93.74
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	93.66
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	92.68
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	92.02
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	91.86
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	91.82
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	91.57
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	91.01
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	90.77
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	89.64
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	87.01
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	86.89
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	86.43
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	81.74
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	81.18
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	80.82
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	80.67

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.84  E-value=1.7e-21  Score=166.04  Aligned_cols=109  Identities=13%  Similarity=0.164  Sum_probs=92.2

Q ss_pred             hcccEEeecCCCCCCCCcccc-------cccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHh
Q psy5049          20 RLGLILYVLFQAQTKPPRSHC-------ICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQ   92 (153)
Q Consensus        20 ~~g~~~~~~~~~~~~p~~~~~-------l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~   92 (153)
                      ..+|+    ||+++||..+..       +...+.+++|++|++|+.+|++.+.+.|+++. .++|||+||++|+++++.+
T Consensus       270 ~~~~i----fStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~-~~~spIvpv~ig~~~~~~~  344 (396)
T d2bwna1         270 APGFI----FSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPII-DHGSHIVPVVIGDPVHTKA  344 (396)
T ss_dssp             CHHHH----TSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBC-CCSSSCEEEECCCHHHHHH
T ss_pred             cchhh----hcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCcC-CCCCCEEEEEeCCHHHHHH
Confidence            34555    889999854332       23345577899999999999999999999884 5889999999999987776


Q ss_pred             cc-----------ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049          93 TS-----------IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus        93 ~a-----------~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      ++           .+|+|||||+|++|+||++||.||+||||++++ +|+.+|
T Consensus       345 ~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~-~L~~iw  396 (396)
T d2bwna1         345 VSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVH-AMDLLW  396 (396)
T ss_dssp             HHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHH-HHHHHC
T ss_pred             HHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHH-HHHHhC
Confidence            54           788999999999999999999999999999999 888764

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.2e-19  Score=153.36  Aligned_cols=108  Identities=15%  Similarity=0.133  Sum_probs=93.6

Q ss_pred             CCCCCCCCcccc-----cccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc---------
Q psy5049          29 FQAQTKPPRSHC-----ICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS---------   94 (153)
Q Consensus        29 ~~~~~~p~~~~~-----l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a---------   94 (153)
                      |+.+++|..+..     .....++++|++|++++.+|++.+.+.|+++. .+++||+||+++++..+..++         
T Consensus       276 ~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~-~~~~pIv~v~~~~~~~a~~~~~~L~~~Gi~  354 (401)
T d1fc4a_         276 FSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLA-GADHAIIPVMLGDAVVAQKFARELQKEGIY  354 (401)
T ss_dssp             HSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCCBC-CSSSSEEEEEEECHHHHHHHHHHHHHTTEE
T ss_pred             hcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhcccCCccC-CCCCCEEEEEECCHHHHHHHHHHHHHCCce
Confidence            778888864433     22346789999999999999999999999874 578999999999998877765         


Q ss_pred             -ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhcCC
Q psy5049          95 -IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGG  138 (153)
Q Consensus        95 -~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~~~  138 (153)
                       .+++|||||+|++|+|+++|+.||+||||++++ +++++.+..|
T Consensus       355 v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~-al~ev~~~lg  398 (401)
T d1fc4a_         355 VTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVE-AFTRIGKQLG  398 (401)
T ss_dssp             CCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHH-HHHHHHHHTT
T ss_pred             EEeECCCCCCCCCceEEEEECCCCCHHHHHHHHH-HHHHHHHHhC
Confidence             788999999999999999999999999999999 9998887754

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=3.5e-19  Score=149.57  Aligned_cols=103  Identities=16%  Similarity=0.087  Sum_probs=87.5

Q ss_pred             CCCCCCCCcccc-------cccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-------
Q psy5049          29 FQAQTKPPRSHC-------ICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS-------   94 (153)
Q Consensus        29 ~~~~~~p~~~~~-------l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a-------   94 (153)
                      |+++.+|..+..       +.....+.++++|++|+.+|++.|.+.|+++. .++|||+||++|+++++.+++       
T Consensus       263 ~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~-~~~s~Ii~v~~g~~~~a~~~~~~L~~~G  341 (383)
T d1bs0a_         263 YSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLA-DSCSAIQPLIVGDNSRALQLAEKLRQQG  341 (383)
T ss_dssp             SSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEEC-SCCSSBCCEEEESHHHHHHHHHHHHHTT
T ss_pred             hcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCccC-CCCCCEEEEEECCHHHHHHHHHHHHHCC
Confidence            777788864322       23345578999999999999999999999874 588999999999998887765       


Q ss_pred             ---ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049          95 ---IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus        95 ---~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~  133 (153)
                         .+++||+||+|++|+||++|+.||+||||++++ +|+.+
T Consensus       342 i~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~-~L~~~  382 (383)
T d1bs0a_         342 CWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLE-VLHGN  382 (383)
T ss_dssp             EECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHH-HHHHH
T ss_pred             ceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHH-HHHhc
Confidence               788999999999999999999999999999998 77653

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=98.60  E-value=3.2e-08  Score=74.02  Aligned_cols=89  Identities=9%  Similarity=-0.130  Sum_probs=71.3

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc---ccccCCCCCCCCceEEEEeeCCCC
Q psy5049          42 CFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS---IGLGVEQTALNDGLSLYESSHLRS  118 (153)
Q Consensus        42 ~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~HT  118 (153)
                      .........+++.++..+++..|+..|+.+...+.++++.+.+.+ ..+.++.   ....+++++.|.+++|+|++..+|
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~v~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t  326 (340)
T d1svva_         248 KDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILEN-TMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATE  326 (340)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECBEEEH-HHHHHHTTTEECEEEEEETTTEEEEEEECCTTCC
T ss_pred             hhhHHHHHHHHHHHHHhhhHHHHhcCCCeeecCCCceEEEEeCCH-HHHHHHHHhhhhhcccccCCCCcEEEEECCCCCC
Confidence            334556788889999999999999999987666778988777653 3444444   445778889999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy5049         119 ANLWNRPHSPSLMA  132 (153)
Q Consensus       119 ~edId~L~~~~L~~  132 (153)
                      +||||++++ +|++
T Consensus       327 ~edid~~l~-~l~~  339 (340)
T d1svva_         327 EKECHRFVE-VLKR  339 (340)
T ss_dssp             HHHHHHHHH-HHHH
T ss_pred             HHHHHHHHH-HHhc
Confidence            999999988 7764

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=98.46  E-value=3.3e-07  Score=69.67  Aligned_cols=86  Identities=12%  Similarity=0.100  Sum_probs=63.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCchHHHhcc-ccccCCCCCCCCceEEEEeeCCCCHHHH
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFFSKVGQTS-IGLGVEQTALNDGLSLYESSHLRSANLW  122 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~~~~~~~a-~~i~~PtVP~g~~RlRI~lsA~HT~edI  122 (153)
                      ...+...+...+..++...+.+. |+.+.+.++++|+++-+++. .+..+. ..+..+++|.+..++||+++..||+|||
T Consensus       256 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~~~-~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edi  334 (345)
T d1v72a1         256 LWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLDSA-MIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDV  334 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEECHH-HHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHH
T ss_pred             hhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcCHH-HHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHH
Confidence            33556666667777888888876 44444567799999988643 222222 6666778899999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy5049         123 NRPHSPSLMA  132 (153)
Q Consensus       123 d~L~~~~L~~  132 (153)
                      |++++ +|+.
T Consensus       335 d~~le-~lr~  343 (345)
T d1v72a1         335 DHLLN-QVRL  343 (345)
T ss_dssp             HHHHH-HHHH
T ss_pred             HHHHH-HHHH
Confidence            99888 6654

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.56  E-value=7.9e-05  Score=56.23  Aligned_cols=88  Identities=18%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCCch-HHHhcc-----cc-ccCCCCCCCCceEEEEeeCC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFFFS-KVGQTS-----IG-LGVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~~~-~~~~~a-----~~-i~~PtVP~g~~RlRI~lsA~  116 (153)
                      ...+....+.++..++.+.+...+.... ....++++.+.+.+.. .+.++.     .. +..   |.+..++||+++..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~l~~~L~~~Gi~v~---~~~~~~iRi~~~~~  322 (343)
T d1m6sa_         246 KMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLAN---AVSDTEIRLVTHKD  322 (343)
T ss_dssp             HSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECE---EEETTEEEEECCTT
T ss_pred             hhHHHHHHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCCcccHHHHHHHHHHCCCEEe---cCCCCEEEEECCCC
Confidence            4456677788888888888887665332 2345778888776532 222222     22 222   23567899999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhc
Q psy5049         117 RSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       117 HT~edId~L~~~~L~~~~~~  136 (153)
                      ||+||||++++ +++++.+.
T Consensus       323 ~t~edid~~v~-~l~~v~~~  341 (343)
T d1m6sa_         323 VSRNDIEEALN-IFEKLFRK  341 (343)
T ss_dssp             SCHHHHHHHHH-HHHHHHHH
T ss_pred             CCHHHHHHHHH-HHHHHHHH
Confidence            99999999999 89887764

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=96.80  E-value=0.0012  Score=52.04  Aligned_cols=82  Identities=15%  Similarity=0.077  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccC--CCCCCeEEEEcCCc---hHHHhcc----ccccCCCCCCCCceEEEEeeCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYG--HRDSPVVPVLVFFF---SKVGQTS----IGLGVEQTALNDGLSLYESSHL  116 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~s~SPIiPV~~g~~---~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~  116 (153)
                      ..+.++..++..++.+.|++. |+.+.+  .+.++|+.+.+.+.   +...+..    +.++.  + .+...+|||++..
T Consensus       287 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~~~~~~~~i~~~L~~~gi~v~~--~-~~~~~lRis~~~~  363 (381)
T d1elua_         287 EERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRT--I-ADPDCIRACCHYI  363 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEE--E-TTTTEEEEECCTT
T ss_pred             ccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcCCCCCHHHHHHHHHhCCcEEEe--c-CCCCEEEEecCCC
Confidence            345678889999999999987 544432  23467888766443   2222222    22221  1 1236799999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy5049         117 RSANLWNRPHSPSLMA  132 (153)
Q Consensus       117 HT~edId~L~~~~L~~  132 (153)
                      +|+||||++++ +|++
T Consensus       364 nt~edid~ll~-~l~e  378 (381)
T d1elua_         364 TDEEEINHLLA-RLAD  378 (381)
T ss_dssp             CCHHHHHHHHH-HHTT
T ss_pred             CCHHHHHHHHH-HHHh
Confidence            99999999888 6543

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.68  E-value=0.0012  Score=53.41  Aligned_cols=87  Identities=8%  Similarity=-0.001  Sum_probs=58.2

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHh----CCCcccCCCCCCeEEEEcCCch--HHHhcc-------ccccCCCCCCC-----
Q psy5049          44 ISGIRRISVLAHNTRYFRRKLNR----LGLIVYGHRDSPVVPVLVFFFS--KVGQTS-------IGLGVEQTALN-----  105 (153)
Q Consensus        44 ~~~~~rr~~L~~ni~~fr~~L~~----~G~~~~~~s~SPIiPV~~g~~~--~~~~~a-------~~i~~PtVP~g-----  105 (153)
                      +...+..++..++.+|+++.|++    .|+.+. .++.++.+++..+..  +.....       ..+..|.++.|     
T Consensus       326 ~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll-~~~~~~~~~~~~~~~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~  404 (434)
T d2z67a1         326 KNYLELVKNQKNSKKLLDELLNDLSKKTGGKFL-DVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLG  404 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBC-CCCCSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSS
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHhhhhcCceec-CCCCCceeeeecCCCHHHHHHHHHHcCCeeeehhhhccccCeeeec
Confidence            34467888899999999999976    366664 456677666665432  221111       22333443322     


Q ss_pred             ---CceEEEEeeCCCCHHHHHHHHHHHHHH
Q psy5049         106 ---DGLSLYESSHLRSANLWNRPHSPSLMA  132 (153)
Q Consensus       106 ---~~RlRI~lsA~HT~edId~L~~~~L~~  132 (153)
                         ..-+|++++..+|+||||++++ +|+.
T Consensus       405 ~~~~~~l~~~~s~~~T~edID~~i~-~L~k  433 (434)
T d2z67a1         405 TYTHDYIVMNAAIGVRTEDIVNSVS-KLEK  433 (434)
T ss_dssp             CCSCCEEEEECCTTCCHHHHHHHHH-HHHT
T ss_pred             ccCCCeEEEecCCCCCHHHHHHHHH-HHhc
Confidence               3559999999999999999988 7764

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0052  Score=49.36  Aligned_cols=92  Identities=11%  Similarity=-0.033  Sum_probs=60.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCccc--CCCCCCeEEEEcCCc--hHHHhcc----ccccC------CCC--CCCCceE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVY--GHRDSPVVPVLVFFF--SKVGQTS----IGLGV------EQT--ALNDGLS  109 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~--~~s~SPIiPV~~g~~--~~~~~~a----~~i~~------PtV--P~g~~Rl  109 (153)
                      .+...++......++.+.+...+....  ....+||+.+-+...  .......    +.++.      |..  -.-.+.+
T Consensus       298 ~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~~~~~~~~~L~~~gI~v~~G~~c~~~~~~~~~~~g~i  377 (405)
T d1jf9a_         298 LNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMC  377 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEE
T ss_pred             hHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCCCHHHHHHHHHHCCcEEEccchhhhhHHHhcCCCCEE
Confidence            366677777888888888888876432  123478988877542  2222221    22210      000  0113679


Q ss_pred             EEEeeCCCCHHHHHHHHHHHHHHHHhcCC
Q psy5049         110 LYESSHLRSANLWNRPHSPSLMAVFRGGG  138 (153)
Q Consensus       110 RI~lsA~HT~edId~L~~~~L~~~~~~~~  138 (153)
                      |||++..+|+||||++++ +|+.+.+.+|
T Consensus       378 RiS~~~ynt~eDid~l~~-~l~~i~r~~~  405 (405)
T d1jf9a_         378 RASLAMYNTHEEVDRLVT-GLQRIHRLLG  405 (405)
T ss_dssp             EEECCTTCCHHHHHHHHH-HHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHH-HHHHHHHhcC
Confidence            999999999999999999 9999988764

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=96.25  E-value=0.011  Score=49.85  Aligned_cols=85  Identities=13%  Similarity=0.111  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCe---EEEEcCCchHHHhcc-----ccc-----cCCCCCCCCceEEEEe
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPV---VPVLVFFFSKVGQTS-----IGL-----GVEQTALNDGLSLYES  113 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPI---iPV~~g~~~~~~~~a-----~~i-----~~PtVP~g~~RlRI~l  113 (153)
                      .+.-++..+|++|++++|...|+.+.  .+.|.   +.|-+..+..+..++     ..+     .||.  .++.-+-||+
T Consensus       342 ~elA~~~~~~A~Yla~~L~~~G~~~~--~~~~ff~EFvv~~~~~~~~~~i~k~L~~~G~~~~~~~~p~--~~~~~llv~v  417 (471)
T d1wyub1         342 KKAAALAVLNARYLKELLKEKGYRVP--YDGPSMHEFVAQPPEGFRALDLAKGLLELGFHPPTVYFPL--IVKEALMVEP  417 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCBCS--SCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCCCEESCST--TSTTCEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCceec--cCcceeeEEeecCCCCCCHHHHHHHHHHcCCCCCcccCcC--CCCCeEEEec
Confidence            67778888999999999999998763  23342   323322211222221     333     3443  2456788999


Q ss_pred             eCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         114 SHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~~~  136 (153)
                      |=.||+||||++++ +|+++.+.
T Consensus       418 TE~~tkedID~lv~-aL~~i~~e  439 (471)
T d1wyub1         418 TETEAKETLEAFAE-AMGALLKK  439 (471)
T ss_dssp             CTTSCHHHHHHHHH-HHHHHHTS
T ss_pred             CCCCCHHHHHHHHH-HHHHHHHh
Confidence            99999999999999 88887765

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0047  Score=50.42  Aligned_cols=89  Identities=8%  Similarity=-0.087  Sum_probs=58.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE--------cCCch----HHHhcc-----------------c
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL--------VFFFS----KVGQTS-----------------I   95 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~--------~g~~~----~~~~~a-----------------~   95 (153)
                      ...+..++..+|++||+++|.+.|..+.+ ...+.+.+.        .....    .+.++.                 .
T Consensus       322 ~~~~~~~~~~~~~~~l~~~L~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~  400 (467)
T d2v1pa1         322 MNLDWLAYRIAQVQYLVDGLEEIGVVCQQ-AGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRD  400 (467)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCCEEE-ECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCcccC-CCccceeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccccccccc
Confidence            44667788889999999999999876532 222322221        11110    011110                 2


Q ss_pred             cccCCCCCCCCceEEEEee-CCCCHHHHHHHHHHHHHHHHh
Q psy5049          96 GLGVEQTALNDGLSLYESS-HLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus        96 ~i~~PtVP~g~~RlRI~ls-A~HT~edId~L~~~~L~~~~~  135 (153)
                      ....+.+|.+.+.+|+++. ..+|+||||++++ +++.+.+
T Consensus       401 ~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~-~l~~v~~  440 (467)
T d2v1pa1         401 PKTGKQLPCPAELLRLTIPRATYTQTHMDFIIE-AFKHVKE  440 (467)
T ss_dssp             TTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHH-HHHHHHH
T ss_pred             cccCCccCCCcceEEEecCCCCCCHHHHHHHHH-HHHHHHH
Confidence            3345566778889999985 5789999999999 8887774

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.015  Score=45.32  Aligned_cols=90  Identities=13%  Similarity=0.010  Sum_probs=57.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCC---CCC-eEEEEcCCc---hHHHhcc----ccccCCCC-CCCCceEEEE-e
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHR---DSP-VVPVLVFFF---SKVGQTS----IGLGVEQT-ALNDGLSLYE-S  113 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s---~SP-IiPV~~g~~---~~~~~~a----~~i~~PtV-P~g~~RlRI~-l  113 (153)
                      +.+.++..++..++++.+...|+......   .+| |+.+.+.+.   +...+..    ..+..... +.....+||+ +
T Consensus       282 ~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~  361 (388)
T d1h0ca_         282 ENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLL  361 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECC
T ss_pred             ccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCC
Confidence            56667778889999999999988653221   244 677777542   2322222    11111111 1223578998 6


Q ss_pred             eCCCCHHHHHHHHHHHHHHHHhcC
Q psy5049         114 SHLRSANLWNRPHSPSLMAVFRGG  137 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~~~~  137 (153)
                      ...+|+||||++++ +|+++.+.+
T Consensus       362 g~~~t~edid~li~-aL~~~L~~l  384 (388)
T d1h0ca_         362 GCNATRENVDRVTE-ALRAALQHC  384 (388)
T ss_dssp             GGGCSHHHHHHHHH-HHHHHHHHS
T ss_pred             CCCCCHHHHHHHHH-HHHHHHHHh
Confidence            78899999999999 998776653

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.72  E-value=0.02  Score=47.71  Aligned_cols=91  Identities=5%  Similarity=-0.214  Sum_probs=65.4

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC-chHHHhcc-------ccccCCCCCCCCceEEEEee
Q psy5049          44 ISGIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF-FSKVGQTS-------IGLGVEQTALNDGLSLYESS  114 (153)
Q Consensus        44 ~~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~-~~~~~~~a-------~~i~~PtVP~g~~RlRI~ls  114 (153)
                      ....++.++..++++||.+.+.+. +|.+...+...||.+-+.. +....++.       .....|++-.|+.-+|+++.
T Consensus       372 ~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV~Fr~~~~d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~  451 (476)
T d1js3a_         372 KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAIC  451 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEEEEEEccCChHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeC
Confidence            456788889999999999999876 7777667778887776543 33222222       23345566678888999988


Q ss_pred             CCC-CHHHHHHHHHHHHHHHHh
Q psy5049         115 HLR-SANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       115 A~H-T~edId~L~~~~L~~~~~  135 (153)
                      ..+ |++||+.+++ .++++.+
T Consensus       452 n~~Tt~~did~~~~-~i~~~a~  472 (476)
T d1js3a_         452 SRKVESGHVRLAWE-HIRGLAA  472 (476)
T ss_dssp             CTTCCHHHHHHHHH-HHHHHHH
T ss_pred             CCCCCHHHHHHHHH-HHHHHHH
Confidence            665 5889999998 7766554

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=95.66  E-value=0.043  Score=43.77  Aligned_cols=90  Identities=16%  Similarity=0.018  Sum_probs=57.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCC-cccC-----CCCCCeEEEEcCC--chHHHhcc----ccccC------CC--CCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGL-IVYG-----HRDSPVVPVLVFF--FSKVGQTS----IGLGV------EQ--TALND  106 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~-~~~~-----~s~SPIiPV~~g~--~~~~~~~a----~~i~~------Pt--VP~g~  106 (153)
                      ++.+++..++..++.+.+.+.+. .+.+     ...++|+.+-+..  ........    +.++.      |.  .-...
T Consensus       298 ~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~~~~~~~~~~  377 (408)
T d1t3ia_         298 ENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDAS  377 (408)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCCCHHHHHHHHhhCCcEEecCcccccHHHHhhcCC
Confidence            55667777888899998887753 2222     1236788776653  33333322    22210      00  01124


Q ss_pred             ceEEEEeeCCCCHHHHHHHHHHHHHHHHhcC
Q psy5049         107 GLSLYESSHLRSANLWNRPHSPSLMAVFRGG  137 (153)
Q Consensus       107 ~RlRI~lsA~HT~edId~L~~~~L~~~~~~~  137 (153)
                      +.+||+++..+|++|||++++ +|+++.+.+
T Consensus       378 g~vRiS~~~ynt~~did~li~-~L~~~~~~f  407 (408)
T d1t3ia_         378 GSARASLYFYNTKEEIDLFLQ-SLQATIRFF  407 (408)
T ss_dssp             CCEEEECCTTCCHHHHHHHHH-HHHHHHHHT
T ss_pred             ccEEEECCCCCCHHHHHHHHH-HHHHHHHHh
Confidence            679999999999999999999 998877653

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=95.53  E-value=0.046  Score=45.02  Aligned_cols=88  Identities=9%  Similarity=0.024  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC--------CchHHHhcc-----------ccc------cCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF--------FFSKVGQTS-----------IGL------GVEQ  101 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g--------~~~~~~~~a-----------~~i------~~Pt  101 (153)
                      .+..++-.++++||.+.|.+.|+.+......+.+.+-..        +.-....++           ..+      +.|.
T Consensus       312 ~~~l~~r~~~~~~L~e~L~~~g~~vv~p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~  391 (456)
T d1c7ga_         312 YEYIEHRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKE  391 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCcccCCCCcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCc
Confidence            344555578889999999999987654444555555211        110111111           011      1121


Q ss_pred             C----CCCCceEEEEee-CCCCHHHHHHHHHHHHHHHHh
Q psy5049         102 T----ALNDGLSLYESS-HLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       102 V----P~g~~RlRI~ls-A~HT~edId~L~~~~L~~~~~  135 (153)
                      .    +...+.+|+++. ..+|+||||++++ +++.+.+
T Consensus       392 ~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae-~i~~v~~  429 (456)
T d1c7ga_         392 TGENHRPKLETVRLTIPRRVYTYAHMDVVAD-GIIKLYQ  429 (456)
T ss_dssp             SCCBCCCSCCEEEEECCTTSCCHHHHHHHHH-HHHHHHT
T ss_pred             ccCccCCccceEEEecCcccCCHHHHHHHHH-HHHHHHh
Confidence            1    223568999987 5689999999999 8887764

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.024  Score=44.46  Aligned_cols=111  Identities=6%  Similarity=-0.039  Sum_probs=55.9

Q ss_pred             HHHHHHhHHHHHHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE
Q psy5049           4 ISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL   83 (153)
Q Consensus         4 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~   83 (153)
                      ..++++...++.++|...+..........-.|...++.......          ..+...|.+.+... |   +...+..
T Consensus       266 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~i~v~~-G---~~c~~~~  331 (391)
T d1p3wa_         266 MERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEG----------ESLIMALKDLAVSS-G---SACTSAS  331 (391)
T ss_dssp             HHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTSCH----------HHHHHHTTTEECBC-C---CC-----
T ss_pred             HHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCCCh----------HHHHHHhCCCEEEc-c---ccccCCc
Confidence            45667778889999998887654433333334323332222111          12333444433322 1   2222222


Q ss_pred             cCCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049          84 VFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus        84 ~g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~  134 (153)
                      .........+...   ..  ...+.+|||++..||+||||++++ +|+++.
T Consensus       332 ~~~~~~l~~~g~~---~~--~~~g~iRiS~~~~nt~edid~l~~-~l~~~l  376 (391)
T d1p3wa_         332 LEPSYVLRALGLN---DE--LAHSSIRFSLGRFTTEEEIDYTIE-LVRKSI  376 (391)
T ss_dssp             -CCCHHHHHHTCC---HH--HHHTEEEEECCTTCCHHHHHHHHH-HHHHHH
T ss_pred             cchhHHHHHcCCC---cc--ccCCEEEEecCCCCCHHHHHHHHH-HHHHHH
Confidence            2222211111110   01  113579999999999999999999 886544

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=95.50  E-value=0.027  Score=43.41  Aligned_cols=86  Identities=15%  Similarity=0.113  Sum_probs=56.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCC-eEEEEcCCc---hHHHhcc-----ccc--cCCCCCCCCceEEEE
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHR--DSP-VVPVLVFFF---SKVGQTS-----IGL--GVEQTALNDGLSLYE  112 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s--~SP-IiPV~~g~~---~~~~~~a-----~~i--~~PtVP~g~~RlRI~  112 (153)
                      ...+.++.+++..++++.+.+.|+......  .|| |+.+.+.+.   ++.....     +.+  .+.  +.+...+||+
T Consensus       277 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~~~~~~~l~~~L~~~~gI~v~~G~~--~~~~~~~Ris  354 (377)
T d1vjoa_         277 LANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLG--ELAGKVWRVG  354 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCG--GGTTTEEEEE
T ss_pred             chHHHHHHHHHhhhhhhhhhccCceeecChHhcCCeEEEEECCCCCCHHHHHHHHHhcCCEEEecCcc--cccCCEEEEe
Confidence            367778888999999999999887653322  244 667777542   3333222     111  222  2234579998


Q ss_pred             e-eCCCCHHHHHHHHHHHHHHHH
Q psy5049         113 S-SHLRSANLWNRPHSPSLMAVF  134 (153)
Q Consensus       113 l-sA~HT~edId~L~~~~L~~~~  134 (153)
                      . ...+|+||||++++ +|+++.
T Consensus       355 ~~g~~~t~edi~~lv~-al~~~l  376 (377)
T d1vjoa_         355 LMGFNSRKESVDQLIP-ALEQVL  376 (377)
T ss_dssp             CCGGGCSHHHHHHHHH-HHHHHH
T ss_pred             cCcCCCCHHHHHHHHH-HHHHHh
Confidence            5 56779999999999 888764

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.083  Score=39.81  Aligned_cols=85  Identities=7%  Similarity=-0.130  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCC---CCCC-eEEEEcCCchHH---Hhcc----cccc--CCCCCCCCceEEEEee
Q psy5049          48 RRISVLAHNTRYFRRKLNRLGLIVYGH---RDSP-VVPVLVFFFSKV---GQTS----IGLG--VEQTALNDGLSLYESS  114 (153)
Q Consensus        48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~---s~SP-IiPV~~g~~~~~---~~~a----~~i~--~PtVP~g~~RlRI~ls  114 (153)
                      ...++..+...+..+.+...+......   ..|+ ++++.+.+....   .+.+    ..++  +..+    +-+||++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~~~~~~~~~l~~~Gi~~~~G~~~~----g~~Ris~~  337 (360)
T d1bjna_         262 EMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVV----GGMRASIY  337 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTTT----CSEEEECC
T ss_pred             HHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCcccHHHHHHHHHHCCCEeecCCCcc----CeEEEEec
Confidence            344444455555566666555432111   2244 677788765432   2222    3222  2232    23999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcC
Q psy5049         115 HLRSANLWNRPHSPSLMAVFRGG  137 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~~~  137 (153)
                      ..+|+|||++|++ +|++..+..
T Consensus       338 ~~~t~edV~~li~-~l~e~~~~~  359 (360)
T d1bjna_         338 NAMPLEGVKALTD-FMVEFERRH  359 (360)
T ss_dssp             TTSCHHHHHHHHH-HHHHHHHHH
T ss_pred             CCCCHHHHHHHHH-HHHHHHHHc
Confidence            9999999999999 998876643

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=95.05  E-value=0.034  Score=44.79  Aligned_cols=32  Identities=13%  Similarity=0.008  Sum_probs=28.3

Q ss_pred             CCceEEEEeeCCCCHHHHHHHHHHHHHHHHhcC
Q psy5049         105 NDGLSLYESSHLRSANLWNRPHSPSLMAVFRGG  137 (153)
Q Consensus       105 g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~~  137 (153)
                      +..++|+++|..+|+||||++++ +|.++.+..
T Consensus       428 ~~~~i~~~~s~~~T~edid~li~-aL~ei~r~~  459 (462)
T d1c4ka2         428 DLNSILFLMTPAETPAKMNNLIT-QLLQLQRLI  459 (462)
T ss_dssp             CSSEEEEECCTTCCHHHHHHHHH-HHHHHHHHH
T ss_pred             CCCeEEEEecCCCCHHHHHHHHH-HHHHHHHHH
Confidence            56789999999999999999999 998887653

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.02  E-value=0.086  Score=40.23  Aligned_cols=86  Identities=10%  Similarity=-0.089  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCC-eEEEEcCCc-----hHHHhcc---ccccCCCCCCCCceEEEEeeC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHR--DSP-VVPVLVFFF-----SKVGQTS---IGLGVEQTALNDGLSLYESSH  115 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s--~SP-IiPV~~g~~-----~~~~~~a---~~i~~PtVP~g~~RlRI~lsA  115 (153)
                      .....+.+++...+++.+...|+.+....  .|| ++.+.+...     .......   ..+..+.-+....-+||+...
T Consensus       261 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g  340 (361)
T d1m32a_         261 AARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIG  340 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCS
T ss_pred             hhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCCCCCCCHHHHHHHHHHCCcEEECCCcCCCCEEEEeCCC
Confidence            45556777888899999999998664332  245 556665432     1222222   222333333334568999776


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~  133 (153)
                      .+|++||+++++ +|+.+
T Consensus       341 ~~~~~di~~lv~-al~~~  357 (361)
T d1m32a_         341 EVYAADITALLT-AIRTA  357 (361)
T ss_dssp             SCCHHHHHHHHH-HHHHH
T ss_pred             CCCHHHHHHHHH-HHHHH
Confidence            789999999999 88765

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=94.45  E-value=0.16  Score=39.10  Aligned_cols=82  Identities=9%  Similarity=-0.083  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc--------ccccCCCCCCCCceEEEEeeCCCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS--------IGLGVEQTALNDGLSLYESSHLRS  118 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a--------~~i~~PtVP~g~~RlRI~lsA~HT  118 (153)
                      ...++.++++..++.+.|++.|+.+.....+..+-+-+.+ ..+.++.        ++..|=.-..+..-+||++.  .+
T Consensus       277 ~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g~~~~~~~l~~-~~~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~--~~  353 (368)
T d1v2da_         277 EALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPG-WDAFRLVEEARVALIPASAFYLEDPPKDLFRFAFC--KT  353 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEECCSBSSEEEEECTT-CCHHHHHHHTCEECEEGGGGCSSSCCTTEEEEECC--SC
T ss_pred             HHHHHHHHHhhhhhhhhHHhcCcEEecCCceeEEEEeCCc-cHHHHHHHhCCEEEEechhhCCCCCCCCEEEEEec--CC
Confidence            5666778889999999999999987543334544444433 2223322        12222112345778999985  58


Q ss_pred             HHHHHHHHHHHHHH
Q psy5049         119 ANLWNRPHSPSLMA  132 (153)
Q Consensus       119 ~edId~L~~~~L~~  132 (153)
                      +|+|++.++ .|+.
T Consensus       354 ~e~i~~ai~-rL~~  366 (368)
T d1v2da_         354 EEELHLALE-RLGR  366 (368)
T ss_dssp             HHHHHHHHH-HHHH
T ss_pred             HHHHHHHHH-HHHH
Confidence            999999776 5543

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.37  E-value=0.092  Score=39.90  Aligned_cols=85  Identities=8%  Similarity=0.045  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCcccCCC--CCCeEEEEcCCchHHHh-cc----------ccccCCCCCCCCceEEEEeeCCC
Q psy5049          51 SVLAHNTRYFRRKLNRLGLIVYGHR--DSPVVPVLVFFFSKVGQ-TS----------IGLGVEQTALNDGLSLYESSHLR  117 (153)
Q Consensus        51 ~~L~~ni~~fr~~L~~~G~~~~~~s--~SPIiPV~~g~~~~~~~-~a----------~~i~~PtVP~g~~RlRI~lsA~H  117 (153)
                      .+..++.+++.+.|.+.|+.+.+..  .++++.+.......... ..          ..-....+..|..+.....+..+
T Consensus       265 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~  344 (364)
T d2e7ja1         265 DEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGL  344 (364)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCeecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHHHhcCCceecCCCcceEEEeccCC
Confidence            3445788999999999998764322  23333332211111111 00          11122233445555544446778


Q ss_pred             CHHHHHHHHHHHHHHHHhc
Q psy5049         118 SANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       118 T~edId~L~~~~L~~~~~~  136 (153)
                      |+||||++++ +++.+.+.
T Consensus       345 t~edid~~~~-~l~ei~~~  362 (364)
T d2e7ja1         345 SDEEVDYVLN-AFKEIIEK  362 (364)
T ss_dssp             CHHHHHHHHH-HHHHHHHH
T ss_pred             CHHHHHHHHH-HHHHHHHH
Confidence            9999999999 88877654

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.018  Score=46.32  Aligned_cols=54  Identities=22%  Similarity=0.123  Sum_probs=39.1

Q ss_pred             HHHHHHhHHHHHHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcc
Q psy5049           4 ISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIV   71 (153)
Q Consensus         4 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~   71 (153)
                      ..++.+|.+||++.|.+.||.+ +..++++.|+    ....  +       +.+..+.+.|.+.|+.+
T Consensus       291 ~~~l~~~~~~~~~~l~~~g~~~-~~~~s~Ii~v----~~g~--~-------~~a~~~~~~L~~~Gi~v  344 (383)
T d1bs0a_         291 REKLAALITRFRAGVQDLPFTL-ADSCSAIQPL----IVGD--N-------SRALQLAEKLRQQGCWV  344 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCEE-CSCCSSBCCE----EEES--H-------HHHHHHHHHHHHTTEEC
T ss_pred             HHHHHHHHHHHHHHHHhcCCcc-CCCCCCEEEE----EECC--H-------HHHHHHHHHHHHCCceE
Confidence            4678899999999999999987 5556777774    2221  1       22355777888899865

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=94.24  E-value=0.11  Score=40.15  Aligned_cols=92  Identities=11%  Similarity=-0.014  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCC---CCC-eEEEEcCCc---hHHHhcc----ccccCCCC-CCCCceEEEE-e
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHR---DSP-VVPVLVFFF---SKVGQTS----IGLGVEQT-ALNDGLSLYE-S  113 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s---~SP-IiPV~~g~~---~~~~~~a----~~i~~PtV-P~g~~RlRI~-l  113 (153)
                      .++..+......+.+..+...++......   .|| |+.+.+.+.   .+....+    ..+.++.. +....-+||+ +
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~  359 (388)
T d2ch1a1         280 ENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIM  359 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECC
T ss_pred             HHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCCCHHHHHHHHhhcCCEEEeCCCccccCCEEEEcCC
Confidence            44555555666666777776665442211   255 667777542   3333332    23344432 1223468999 6


Q ss_pred             eCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy5049         114 SHLRSANLWNRPHSPSLMAVFRGGGP  139 (153)
Q Consensus       114 sA~HT~edId~L~~~~L~~~~~~~~~  139 (153)
                      ...+|+|||+++++ +|+++.+..+|
T Consensus       360 g~~~t~edI~~ll~-alke~L~~~~~  384 (388)
T d2ch1a1         360 GECSTVQKIQFYLY-GFKESLKATHP  384 (388)
T ss_dssp             GGGCSHHHHHHHHH-HHHHHHHHHCT
T ss_pred             cCCCCHHHHHHHHH-HHHHHHHhhCC
Confidence            67889999999999 99887776554

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=94.10  E-value=0.18  Score=39.03  Aligned_cols=67  Identities=10%  Similarity=-0.066  Sum_probs=42.6

Q ss_pred             hCCCcccCCCC----CCeEEEEcCCchHHHhcc--ccccCCCCCCCCceEEEEeeC-CCCHHHHHHHHHHHHHHHHh
Q psy5049          66 RLGLIVYGHRD----SPVVPVLVFFFSKVGQTS--IGLGVEQTALNDGLSLYESSH-LRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus        66 ~~G~~~~~~s~----SPIiPV~~g~~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA-~HT~edId~L~~~~L~~~~~  135 (153)
                      ..|+.+.+..+    ++|+.+.+.+...+.+..  ..| +.. ......+||++.. .+|+||||++++ +|+++.+
T Consensus       326 ~~~~~i~~p~~~~~r~~~vsf~~~~~~~v~~~L~~~gi-~~~-~r~~~~lRiS~~h~ynt~~did~~~~-~L~~vl~  399 (404)
T d1qz9a_         326 AHELTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGV-IGD-YREPRIMRFGFTPLYTTFTEVWDAVQ-ILGEILD  399 (404)
T ss_dssp             TSCCEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTE-ECE-EETTTEEEEECCTTTCCHHHHHHHHH-HHHHHHH
T ss_pred             CCCEEEECCCCccceeeEEEEecCCHHHHHHHHHHCCC-EEe-ecCCCeEEEECCCCCCCHHHHHHHHH-HHHHHHH
Confidence            45665543222    688888877766554443  222 111 1123579999975 799999999999 8876654

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.76  E-value=0.096  Score=40.52  Aligned_cols=111  Identities=12%  Similarity=0.077  Sum_probs=57.9

Q ss_pred             HHHHhHHHHHHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC
Q psy5049           6 VLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF   85 (153)
Q Consensus         6 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g   85 (153)
                      .......|+.+.|..++-.+.++......+..+..+......           .+...|...|+.+-  +.+.+-+-...
T Consensus       264 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~L~~~gI~vr--~G~~c~~~~~~  330 (376)
T d1eg5a_         264 HMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNIRGS-----------TLQNLLSGYGIYVS--TSSACTSKDER  330 (376)
T ss_dssp             HHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTCCHH-----------HHHHHHHHTTEECB--C----------
T ss_pred             hhhhhhhhhccccccccccccccccccccceeeeccCCCCHH-----------HHHHHHhhCCeEEe--CcchhcCCccc
Confidence            345566778888988888887775555555322223222222           22333555675441  22221111000


Q ss_pred             CchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049          86 FFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus        86 ~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                       ....... ..+..   ....+.+||+++..+|+||||++++ +|+++..
T Consensus       331 -~~~~l~~-~gi~~---~~~~~~iRiS~~~ynt~edid~l~~-~L~~iv~  374 (376)
T d1eg5a_         331 -LRHVLDA-MGVDR---RIAQGAIRISLCKYNTEEEVDYFLK-KIEEILS  374 (376)
T ss_dssp             ---CHHHH-TTCCH---HHHHHEEEEECCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             -hhHHHHH-cCCCc---ccCCCEEEEecCCCCCHHHHHHHHH-HHHHHHh
Confidence             0011110 11110   0123579999999999999999999 8887643

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=93.74  E-value=0.17  Score=38.81  Aligned_cols=81  Identities=16%  Similarity=-0.020  Sum_probs=52.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCc-hHHHh-cc---ccc----cCCCCCCCCceEEEEeeC
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFF-SKVGQ-TS---IGL----GVEQTALNDGLSLYESSH  115 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~-~~~~~-~a---~~i----~~PtVP~g~~RlRI~lsA  115 (153)
                      ..+.++++.++-.++.+.|.+. |+.+ ..+.++-+-+-+..+ ....+ +.   +.+    .||.  .+...+||++. 
T Consensus       264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~p~~~~f~~~~~~~~~~~~~~~L~~~gv~vr~~~~f~~--~~~~~iRis~~-  339 (355)
T d1lc5a_         264 QQATWHWLREEGARFYQALCQLPLLTV-YPGRANYLLLRCEREDIDLQRRLLTQRILIRSCANYPG--LDSRYYRVAIR-  339 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTEEE-CCCSSSEEEEEESCTTCCHHHHHHTTTEECEECTTSTT--CCTTEEEEECC-
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcCCcEE-CCCCCEEEEEECCCCHHHHHHHHHHCCcEEEeCccCCC--CCCCEEEEEeC-
Confidence            4567888889999999999987 4444 345556444444433 22222 11   222    3543  23568999985 


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy5049         116 LRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       116 ~HT~edId~L~~~~L~~~  133 (153)
                        |++|++++++ +|+.+
T Consensus       340 --~~~e~~~li~-aL~~i  354 (355)
T d1lc5a_         340 --SAAQNERLLA-ALRNV  354 (355)
T ss_dssp             --CHHHHHHHHH-HHHHH
T ss_pred             --CHHHHHHHHH-HHHHh
Confidence              8999999988 77764

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=93.66  E-value=0.21  Score=39.93  Aligned_cols=89  Identities=9%  Similarity=0.030  Sum_probs=53.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC--------ch----HHHhcc-------ccccCC------
Q psy5049          46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF--------FS----KVGQTS-------IGLGVE------  100 (153)
Q Consensus        46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~--------~~----~~~~~a-------~~i~~P------  100 (153)
                      .++..++..++..|+++.|++.|+.+........+.+....        .-    ...++.       ..+.+|      
T Consensus       320 ~~~~~~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~  399 (465)
T d1ax4a_         320 EEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDP  399 (465)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCT
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCccccCCCcceeeeehhhhcCCCccccchhHHHHHHHHHhcCceecccccccccccc
Confidence            45667778889999999999999876544444433332211        00    011100       111111      


Q ss_pred             ----CCCCCCceEEEEee-CCCCHHHHHHHHHHHHHHHHh
Q psy5049         101 ----QTALNDGLSLYESS-HLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       101 ----tVP~g~~RlRI~ls-A~HT~edId~L~~~~L~~~~~  135 (153)
                          ..+...+.+|+++. ..+|+||||++++ +++.+.+
T Consensus       400 ~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~-~l~~v~~  438 (465)
T d1ax4a_         400 ATGEQKHADMEFMRLTIARRVYTNDHMDYIAD-ALIGLKE  438 (465)
T ss_dssp             TTCSBCCCSCCEEEEECCTTSSCHHHHHHHHH-HHHTTHH
T ss_pred             ccCCccCCCCCceEEeCCCCCCCHHHHHHHHH-HHHHHHH
Confidence                11223568999874 5789999999999 8876653

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=92.68  E-value=0.5  Score=36.00  Aligned_cols=85  Identities=6%  Similarity=-0.155  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcc--cC--CCCCCe-EEEEcCCchHHHhc---c----ccc--cCCCCCCCCceEEEE
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIV--YG--HRDSPV-VPVLVFFFSKVGQT---S----IGL--GVEQTALNDGLSLYE  112 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~--~~--~s~SPI-iPV~~g~~~~~~~~---a----~~i--~~PtVP~g~~RlRI~  112 (153)
                      .+...+.+.+...........+...  ..  ...|+. +.+.+.+.....++   +    +.+  .|..+  |  -+||+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~~~~~L~~~GI~~~~G~~~~--g--~~RIs  336 (361)
T d2c0ra1         261 EGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSV--G--GLRAS  336 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTT--C--SEEEE
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcccHHHHHHHHHHCCCEEecCCCcC--C--eEEEE
Confidence            3444444555555555555433211  11  123664 44445554333222   2    222  34443  2  39999


Q ss_pred             eeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049         113 SSHLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       113 lsA~HT~edId~L~~~~L~~~~~~  136 (153)
                      +...+|.|||++|++ +|++..+.
T Consensus       337 ~~~~~~~edv~~Lv~-~l~~~~~~  359 (361)
T d2c0ra1         337 IYNAVPYESCEALVQ-FMEHFKRS  359 (361)
T ss_dssp             CCTTSCHHHHHHHHH-HHHHHHHH
T ss_pred             ecCCCCHHHHHHHHH-HHHHHHHh
Confidence            999999999999999 99887654

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=92.02  E-value=0.3  Score=39.82  Aligned_cols=89  Identities=9%  Similarity=-0.073  Sum_probs=58.2

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhCC-CcccCC----CCCCeEEEEcCCch----HHHhcc----------ccccCCCCCC
Q psy5049          44 ISGIRRISVLAHNTRYFRRKLNRLG-LIVYGH----RDSPVVPVLVFFFS----KVGQTS----------IGLGVEQTAL  104 (153)
Q Consensus        44 ~~~~~rr~~L~~ni~~fr~~L~~~G-~~~~~~----s~SPIiPV~~g~~~----~~~~~a----------~~i~~PtVP~  104 (153)
                      +...+..++..++++||.+.|++.+ +.+...    ...|+|..-+.+.+    ....++          +....|....
T Consensus       335 ~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~  414 (450)
T d1pmma_         335 EGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEAT  414 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTTCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCCcC
Confidence            3567888899999999999999886 444321    22566666553321    111111          2223344445


Q ss_pred             CCceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049         105 NDGLSLYESSHLRSANLWNRPHSPSLMAV  133 (153)
Q Consensus       105 g~~RlRI~lsA~HT~edId~L~~~~L~~~  133 (153)
                      +..-+|++++...|++++|++++ .|+..
T Consensus       415 ~~~~lRvvv~~~~t~e~~d~lv~-dl~~~  442 (450)
T d1pmma_         415 DIVVMRIMCRRGFEMDFAELLLE-DYKAS  442 (450)
T ss_dssp             TCEEEEEECCTTCCHHHHHHHHH-HHHHH
T ss_pred             CcEEEEEEccCCCCHHHHHHHHH-HHHHH
Confidence            56789999999999999999998 55433

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=91.86  E-value=0.28  Score=40.46  Aligned_cols=84  Identities=11%  Similarity=0.057  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccCCCC-CCeEEEEcCCch-HHHhcc--cccc-----CCCCCCCCceEEEEeeCC
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRD-SPVVPVLVFFFS-KVGQTS--IGLG-----VEQTALNDGLSLYESSHL  116 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~-SPIiPV~~g~~~-~~~~~a--~~i~-----~PtVP~g~~RlRI~lsA~  116 (153)
                      .+.-++-..|++|++++|.+. |+....... ..=+-|-++.+. ...+..  ..+.     +|.++  ...+.|+++=.
T Consensus       343 ~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~~f~ef~v~~~~~~~~i~k~L~d~G~~~~~~~~~~~~--~~~lli~~TE~  420 (437)
T d1wyua1         343 REVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPKDPEAVRRALAERGFHGATPVPREYG--ENLALFAATEL  420 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSSCHHHHHHHHHHTTCCCCEECCTTSC--SSEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCCeeccCCCCeeeEEEEECCCCHHHHHHHHHhCCCCCCcccccCCC--CCeEEEecCCC
Confidence            444556668999999999886 665432211 122223233221 222211  3333     34333  47789999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy5049         117 RSANLWNRPHSPSLMAV  133 (153)
Q Consensus       117 HT~edId~L~~~~L~~~  133 (153)
                      +|+||||++++ +++++
T Consensus       421 ~tkeeiD~~v~-al~ei  436 (437)
T d1wyua1         421 HEEEDLLALRE-ALKEV  436 (437)
T ss_dssp             CCHHHHHHHHH-HHHHH
T ss_pred             CCHHHHHHHHH-HHHHh
Confidence            99999999999 77654

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=91.82  E-value=0.041  Score=44.42  Aligned_cols=55  Identities=25%  Similarity=0.314  Sum_probs=38.6

Q ss_pred             HHHHHHHhHHHHHHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcc
Q psy5049           3 LISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIV   71 (153)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~   71 (153)
                      ..++|.+|.+|||+.+...|+.+.+ ..+++.|+    .. ..  .      +.+..+.+.|.+.|+.+
T Consensus       301 ~~~~l~~~~~~~~~~l~~~g~~~~~-~~~pIv~v----~~-~~--~------~~a~~~~~~L~~~Gi~v  355 (401)
T d1fc4a_         301 LRDRLWANARQFREQMSAAGFTLAG-ADHAIIPV----ML-GD--A------VVAQKFARELQKEGIYV  355 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCBCC-SSSSEEEE----EE-EC--H------HHHHHHHHHHHHTTEEC
T ss_pred             HHHHHHHHHHHHHhhhcccCCccCC-CCCCEEEE----EE-CC--H------HHHHHHHHHHHHCCceE
Confidence            4688999999999999999999855 44555553    22 11  1      12345677888999765

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=91.57  E-value=0.045  Score=44.68  Aligned_cols=32  Identities=13%  Similarity=0.234  Sum_probs=26.5

Q ss_pred             HHHHHHhHHHHHHHhhhcccEEeecCCCCCCCC
Q psy5049           4 ISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPP   36 (153)
Q Consensus         4 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~   36 (153)
                      -.++.+|.+|||+.|..+||.+. +..+++.|+
T Consensus       303 r~~l~~~~~~~~~~l~~~g~~~~-~~~spIvpv  334 (396)
T d2bwna1         303 RDAQQMHAKVLKMRLKALGMPII-DHGSHIVPV  334 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCBC-CCSSSCEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcC-CCCCCEEEE
Confidence            35677899999999999999984 467788884

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=91.01  E-value=0.32  Score=40.16  Aligned_cols=91  Identities=9%  Similarity=-0.077  Sum_probs=64.7

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCCch----HHHhcc---------cccc-CCCCCCCCce
Q psy5049          44 ISGIRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFFFS----KVGQTS---------IGLG-VEQTALNDGL  108 (153)
Q Consensus        44 ~~~~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~~~----~~~~~a---------~~i~-~PtVP~g~~R  108 (153)
                      .++.+..++..+|++.|.+.|.+.||.+. |.++++++-|-+.+..    .+....         +.+- -|..|...+.
T Consensus       281 ~~fk~Y~~qvv~NA~~La~~L~~~G~~iv~ggTdnHlvlvdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SG  360 (416)
T d1dfoa_         281 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSG  360 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcccccCCCCCceeEEEecccCCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCc
Confidence            45688999999999999999999999774 4588999888885422    222221         2221 1344555688


Q ss_pred             EEEEee----CCCCHHHHHHHHHHHHHHHHh
Q psy5049         109 SLYESS----HLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       109 lRI~ls----A~HT~edId~L~~~~L~~~~~  135 (153)
                      +||...    -...++|+.++.+ .+..+.+
T Consensus       361 iRiGT~a~TtrG~~e~d~~~iA~-~I~~~l~  390 (416)
T d1dfoa_         361 IRVGTPAITRRGFKEAEAKELAG-WMCDVLD  390 (416)
T ss_dssp             EEEECHHHHHTTCCHHHHHHHHH-HHHHHHH
T ss_pred             eEeCCHHHHhCCCCHHHHHHHHH-HHHHHHH
Confidence            999865    4688999999988 6655443

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=90.77  E-value=1.2  Score=33.38  Aligned_cols=54  Identities=9%  Similarity=-0.160  Sum_probs=36.6

Q ss_pred             CC-eEEEEcCCchHHHhc---c----cc--ccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049          77 SP-VVPVLVFFFSKVGQT---S----IG--LGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus        77 SP-IiPV~~g~~~~~~~~---a----~~--i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      || ++++.+.+......+   +    ..  -.|..+    +.+||++...+|.||+++|++ ++++..+
T Consensus       295 S~~vvsf~i~~~~~~~~~~~~l~~~GI~~~~G~~~~----ggiRiS~~~~~t~e~V~~Li~-~~~~~~~  358 (360)
T d1w23a_         295 SLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSV----GGCRASIYNAVPIDACIALRE-LMIQFKE  358 (360)
T ss_dssp             CSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTTT----CSEEEECCTTSCHHHHHHHHH-HHHHHHH
T ss_pred             ceeEEEEEcCCCccHHHHHHHHHHCCCeeeeCCCcc----CcEEEEeeCCCCHHHHHHHHH-HHHHHHh
Confidence            56 677778765332222   2    22  244443    249999999999999999999 8877665

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.64  E-value=1.7  Score=33.95  Aligned_cols=28  Identities=4%  Similarity=-0.266  Sum_probs=24.1

Q ss_pred             ceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         107 GLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       107 ~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      ..+|+.++-.+|+||||++++ +|+.+.+
T Consensus       410 ~~i~i~~~~~~T~eDID~~v~-~L~kilk  437 (445)
T d3bc8a1         410 AYLNAAAAIGMKMQDVDLFIK-RLDKCLN  437 (445)
T ss_dssp             CEEEEECCTTCCHHHHHHHHH-HHHHHHH
T ss_pred             CeEEEeCcCCCCHHHHHHHHH-HHHHHHH
Confidence            458999999999999999999 8876654

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=87.01  E-value=1.9  Score=32.72  Aligned_cols=81  Identities=12%  Similarity=0.028  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCc-ccCCCCCCeEEEEcCCchHHHhcc----ccccCCCC-CCCCceEEEEeeCCCCHH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLI-VYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQT-ALNDGLSLYESSHLRSAN  120 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~-~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~PtV-P~g~~RlRI~lsA~HT~e  120 (153)
                      .+.++++.+.-.++.+.+.+.+.. ....+.+.-+-+-+.+.....+..    +.+++..- |....-+||++.   |+|
T Consensus       264 ~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~L~~~gIlvr~~~~~~~~~~~lRisig---t~e  340 (354)
T d1fg7a_         264 RERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TRE  340 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHH
T ss_pred             cccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCCCHHHHHHHHHHCCcEEecCCCCCCCCCEEEEEeC---CHH
Confidence            344556667778888888888763 222355665555566655544433    33333221 223467999985   789


Q ss_pred             HHHHHHHHHHH
Q psy5049         121 LWNRPHSPSLM  131 (153)
Q Consensus       121 dId~L~~~~L~  131 (153)
                      |++++++ +|+
T Consensus       341 e~~~~l~-aLk  350 (354)
T d1fg7a_         341 ESQRVID-ALR  350 (354)
T ss_dssp             HHHHHHH-HHH
T ss_pred             HHHHHHH-HHh
Confidence            9999888 775

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=86.89  E-value=0.79  Score=36.72  Aligned_cols=86  Identities=12%  Similarity=0.020  Sum_probs=49.9

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc-------------hHHHhcc-----ccc-cCC
Q psy5049          44 ISGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF-------------SKVGQTS-----IGL-GVE  100 (153)
Q Consensus        44 ~~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~-------------~~~~~~a-----~~i-~~P  100 (153)
                      ...++..++++++..+|++.|++.    +.......-...+.+++.++             +....+.     ..+ ..|
T Consensus       317 i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p  396 (427)
T d2gsaa_         317 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAP  396 (427)
T ss_dssp             HTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCS
T ss_pred             hhhhhHHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECC
Confidence            455678899999999999999643    33211111122444544221             1111121     333 333


Q ss_pred             CCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049         101 QTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       101 tVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~  135 (153)
                      .     ...++.++..||++|||.+++ +++++.+
T Consensus       397 ~-----~~~~~~~~l~~Te~dId~~l~-al~~al~  425 (427)
T d2gsaa_         397 S-----QFEAGFTSLAHTEEDIDATLA-AARTVMS  425 (427)
T ss_dssp             S-----TTSCEECCTTCCHHHHHHHHH-HHHHHHT
T ss_pred             C-----CCcceeCCCCCCHHHHHHHHH-HHHHHHH
Confidence            2     123355789999999999998 8876654

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=86.43  E-value=1.1  Score=33.88  Aligned_cols=75  Identities=8%  Similarity=-0.016  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-------ccccCCCCCCCCceEEEEeeCCCCH
Q psy5049          47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS-------IGLGVEQTALNDGLSLYESSHLRSA  119 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a-------~~i~~PtVP~g~~RlRI~lsA~HT~  119 (153)
                      .+.++.+.++-.++.+.|++.|+.+. .++.+-+-+.+... ...++.       +.++ |    ...-+||++.   |+
T Consensus       252 ~~~~~~~~~~r~~l~~~L~~~g~~~~-~~~g~f~~~~~~~~-~~~~~~~~L~~~GI~vr-~----~~~~vRis~g---~~  321 (334)
T d2f8ja1         252 EERTKFIVEERERMKSALREMGYRIT-DSRGNFVFVFMEKE-EKERLLEHLRTKNVAVR-S----FREGVRITIG---KR  321 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCEEC-CCCSSEEEEECCHH-HHHHHHHHHHHTTEECE-E----ETTEEEEECC---CH
T ss_pred             hhHHHHHHHHHHHHHHHHHHCCCeEC-CCCceEEEEECCCC-CHHHHHHHHHHCCCEEC-C----CCCeEEEEcC---CH
Confidence            45678888888899999999999774 35566333333322 222222       3222 2    2357999984   78


Q ss_pred             HHHHHHHHHHHHH
Q psy5049         120 NLWNRPHSPSLMA  132 (153)
Q Consensus       120 edId~L~~~~L~~  132 (153)
                      ||++++++ +|+.
T Consensus       322 ee~~~l~~-~l~~  333 (334)
T d2f8ja1         322 EENDMILR-ELEV  333 (334)
T ss_dssp             HHHHHHHH-HHHH
T ss_pred             HHHHHHHH-HHhc
Confidence            99999887 6654

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.74  E-value=0.35  Score=37.73  Aligned_cols=41  Identities=7%  Similarity=-0.154  Sum_probs=28.7

Q ss_pred             ccccCCCCCCCCceEEEEeeCCCCHH-HHHHHHHHHHHHHHh
Q psy5049          95 IGLGVEQTALNDGLSLYESSHLRSAN-LWNRPHSPSLMAVFR  135 (153)
Q Consensus        95 ~~i~~PtVP~g~~RlRI~lsA~HT~e-dId~L~~~~L~~~~~  135 (153)
                      ..+..|++|.+++.+||++++.+++. +.|+++++.++.++.
T Consensus       321 ~~ip~~~~p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK~  362 (366)
T d2aeua1         321 ITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKM  362 (366)
T ss_dssp             ECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCEEEEeccccchhhCCHHHHHHHHHHHHHH
Confidence            44577888999999999999877555 556666633355443

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.18  E-value=1.9  Score=32.78  Aligned_cols=89  Identities=8%  Similarity=-0.100  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhC-CCcccC--C--CCCC-eEEEEcCCchHHHhcc---ccccCCCCC--CCCceEEEE-ee
Q psy5049          47 IRRISVLAHNTRYFRRKLNRL-GLIVYG--H--RDSP-VVPVLVFFFSKVGQTS---IGLGVEQTA--LNDGLSLYE-SS  114 (153)
Q Consensus        47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~--s~SP-IiPV~~g~~~~~~~~a---~~i~~PtVP--~g~~RlRI~-ls  114 (153)
                      ..++++-++...++++.+.+. ++....  .  ..++ |+.+.+.+.....++.   ..+.++...  .+..-+||+ +.
T Consensus       278 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G  357 (382)
T d2bkwa1         278 HKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMG  357 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCG
T ss_pred             hhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCCHHHHHHHHHHCCeEEECCCChhhcCCEEEEeCCc
Confidence            555666778888898888753 222211  1  1133 5667777766666554   223344332  345569998 55


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhc
Q psy5049         115 HLRSANLWNRPHSPSLMAVFRG  136 (153)
Q Consensus       115 A~HT~edId~L~~~~L~~~~~~  136 (153)
                      ..-++||++++++ +++.+.+.
T Consensus       358 ~~~~~e~i~~l~~-~l~~i~~~  378 (382)
T d2bkwa1         358 VTACNKNLPYMKN-CFDLIKLA  378 (382)
T ss_dssp             GGTSSTTCTHHHH-HHHHHHHH
T ss_pred             CCCCHHHHHHHHH-HHHHHHHH
Confidence            6667899999999 99888765

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.82  E-value=2.8  Score=34.09  Aligned_cols=92  Identities=8%  Similarity=-0.039  Sum_probs=63.4

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCCc----hHHHhcc---------ccccC-CCCCCCCc
Q psy5049          43 FISGIRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFFF----SKVGQTS---------IGLGV-EQTALNDG  107 (153)
Q Consensus        43 ~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~~----~~~~~~a---------~~i~~-PtVP~g~~  107 (153)
                      ..++.+..++..+|++.|.+.|.+.|+.+. |.++++.+-|-+...    ..+....         +.+.+ |.-|...+
T Consensus       275 ~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv~ggTd~H~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~S  354 (405)
T d1kl1a_         275 QDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTS  354 (405)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCSSCTTTCS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhcCCceeecCCCccceeeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCC
Confidence            345678999999999999999999999774 447899888876332    1222211         22211 22244457


Q ss_pred             eEEEEee----CCCCHHHHHHHHHHHHHHHHh
Q psy5049         108 LSLYESS----HLRSANLWNRPHSPSLMAVFR  135 (153)
Q Consensus       108 RlRI~ls----A~HT~edId~L~~~~L~~~~~  135 (153)
                      .+||-..    -..+++|+.++.+ .+..+.+
T Consensus       355 GiRiGT~a~TtrG~~e~dm~~ia~-~I~~~l~  385 (405)
T d1kl1a_         355 GIRIGTAAVTTRGFGLEEMDEIAA-IIGLVLK  385 (405)
T ss_dssp             EEEEECHHHHHTTCCHHHHHHHHH-HHHHHHT
T ss_pred             ceeecCHHHHhCCCCHHHHHHHHH-HHHHHHh
Confidence            8999864    4688999999988 6665544

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=80.67  E-value=6.5  Score=29.54  Aligned_cols=85  Identities=11%  Similarity=0.074  Sum_probs=50.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc-hH-HHhcc----ccccCCCCC-CCCceEEEEeeCCC
Q psy5049          45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF-SK-VGQTS----IGLGVEQTA-LNDGLSLYESSHLR  117 (153)
Q Consensus        45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~-~~-~~~~a----~~i~~PtVP-~g~~RlRI~lsA~H  117 (153)
                      .....++.+.++..++.+.|++.|+.+......-.+-+-+..+ .+ +.++.    +.++ |.-. -+.+-+||++.  .
T Consensus       281 ~~~~~~~~~~~r~~~~~~~l~~~g~~~~~p~gg~f~~~~~~~~~~~~~~~ll~~~gV~v~-pG~~F~~~g~iRis~~--~  357 (375)
T d1o4sa_         281 DNSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALV-PGSAFLKPGFVRLSFA--T  357 (375)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECE-EGGGGTCTTEEEEECC--S
T ss_pred             chhhhHHHHHHHHHHHHHHHHhcCceEecCCccEEEEEECCCCHHHHHHHHHHhCCEEEE-EccccCCCCeEEEEEc--C
Confidence            4567788899999999999999998774322233333434332 22 22222    2221 1111 12347999985  4


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy5049         118 SANLWNRPHSPSLMAV  133 (153)
Q Consensus       118 T~edId~L~~~~L~~~  133 (153)
                      ++|+|++.++ .|+.+
T Consensus       358 ~~e~l~~al~-rl~~~  372 (375)
T d1o4sa_         358 SIERLTEALD-RIEDF  372 (375)
T ss_dssp             CHHHHHHHHH-HHHHH
T ss_pred             CHHHHHHHHH-HHHHH
Confidence            8899888666 55544