Psyllid ID: psy5072

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MQHVHVCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPPDESVRLLAVCCIYSCYRYCSSQTLLIDK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEccccEccHHHHHHEHHHHcccEcccccccHHHHHHHHcHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcEEEEEcc
Coil and Loop (DISEMBL)
mqhvhvcpahinthdkvgAYCYSELgcmisksgaDYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYalkpffptcdppdesvRLLAVCCIYScyrycssqtllidk
Flexible Loop (DISEMBL)
mqhvhvcpahinthdkVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPPDESVRLLAVCCIYSCYrycssqtllidk
Low Complexity Region (SEG)
MQHVHVCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPPDESVRLLAVcciyscyrycssQTLLIDK
Disordered region (IsUnstruct)
***VHVCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPPDESVRLLAVCCIYSCYRYCSSQTLLI**
Disordered Region (DISOPRED)
***VHVCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPPDESVRLLAVCCIYSCYRYCSSQTLLID*
Disordered Region (DISEMBL)
MQHVHVCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPPDESVRLLAVCCIYSCYRYCSSQTLLIDK
Disordered Region (DISPRO)
**HVHVCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPPDESVRLLAVCCIYSCYRYCSSQTLLIDK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQHVHVCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPPDESVRLLAVCCIYSCYRYCSSQTLLIDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q8BGK6	515	Y+L amino acid transporte	yes	N/A	0.719	0.159	0.621	5e-25
Q59I64	468	Y+L amino acid transporte	yes	N/A	0.719	0.175	0.573	4e-24
Q92536	515	Y+L amino acid transporte	yes	N/A	0.719	0.159	0.585	1e-23
Q9GIP4	190	Putative L-type amino aci	no	N/A	0.684	0.410	0.589	1e-22
Q8MH63	180	Putative L-type amino aci	no	N/A	0.728	0.461	0.542	2e-22
A1L3M3	510	Y+L amino acid transporte	N/A	N/A	0.719	0.160	0.536	2e-22
Q9Z1K8	510	Y+L amino acid transporte	no	N/A	0.710	0.158	0.567	3e-22
Q9R0S5	512	Y+L amino acid transporte	no	N/A	0.710	0.158	0.567	3e-22
Q28I80	514	Y+L amino acid transporte	no	N/A	0.719	0.159	0.536	6e-22
Q9UM01	511	Y+L amino acid transporte	no	N/A	0.710	0.158	0.580	6e-22

>sp|Q8BGK6|YLAT2_MOUSE Y+L amino acid transporter 2 OS=Mus musculus GN=Slc7a6 PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 63/82 (76%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           VGA CY+ELG  I+KSGA YAYI+  FG F+AFIRLW+  +IV P SQAI+A+TF+ Y +
Sbjct: 93  VGALCYAELGTTITKSGASYAYILEAFGGFIAFIRLWVSLLIVEPTSQAIIAITFANYII 152

Query: 77  KPFFPTCDPPDESVRLLAVCCI 98
           KP FPTCDPP  + RLLA  C+
Sbjct: 153 KPSFPTCDPPYVACRLLAAACV 174

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Also acts as an arginine/glutamine exchanger, following an antiport mechanism for amino acid transport, influencing arginine release in exchange for extracellular amino acids. Plays a role in nitric oxide synthesis via transport of L-arginine. Involved in the transport of L-arginine in monocytes. Reduces uptake of ornithine in retinal pigment epithelial cells.
Mus musculus (taxid: 10090)

>sp|Q59I64|YLAT2_DANRE Y+L amino acid transporter 2 OS=Danio rerio GN=slc7a6 PE=2 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 63/82 (76%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           VGA CY+ELG  I+KSGA YAYI+ +FG F+AFIRLW   +I+ P SQA++A+TF+ Y +
Sbjct: 55  VGALCYAELGTTITKSGASYAYILESFGGFIAFIRLWTSLLIIEPTSQAVIAITFANYLV 114

Query: 77  KPFFPTCDPPDESVRLLAVCCI 98
           +P FPTC+PP  + RL+A  CI
Sbjct: 115 QPLFPTCEPPYSASRLIAAACI 136

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids.

Danio rerio (taxid: 7955)

>sp|Q92536|YLAT2_HUMAN Y+L amino acid transporter 2 OS=Homo sapiens GN=SLC7A6 PE=1 SV=3

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 62/82 (75%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           VGA CY+ELG  I+KSGA YAYI+  FG F+AFIRLW+  ++V P  QAI+A+TF+ Y +
Sbjct: 93  VGALCYAELGTTITKSGASYAYILEAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYII 152

Query: 77  KPFFPTCDPPDESVRLLAVCCI 98
           +P FP+CDPP  + RLLA  CI
Sbjct: 153 QPSFPSCDPPYLACRLLAAACI 174

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Also acts as an arginine/glutamine exchanger, following an antiport mechanism for amino acid transport, influencing arginine release in exchange for extracellular amino acids. Plays a role in nitric oxide synthesis in human umbilical vein endothelial cells (HUVECs) via transport of L-arginine. Involved in the transport of L-arginine in monocytes. Reduces uptake of ornithine in retinal pigment epithelial (RPE) cells.

Homo sapiens (taxid: 9606)

>sp|Q9GIP4|LAT1L_HUMAN Putative L-type amino acid transporter 1-like protein IMAA OS=Homo sapiens GN=SLC7A5P2 PE=5 SV=2

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 59/78 (75%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           VGA CY+ELG  ISKSG DYAY++  +G   AF++LWIE +I+RP SQ IVAL F+ Y L
Sbjct: 98  VGALCYAELGTTISKSGGDYAYMLDVYGSLPAFLKLWIELLIIRPSSQYIVALVFATYLL 157

Query: 77  KPFFPTCDPPDESVRLLA 94
           KP FPTC  P+E+ +L+A
Sbjct: 158 KPLFPTCPVPEEAAKLVA 175

Homo sapiens (taxid: 9606)

>sp|Q8MH63|LAT1N_HUMAN Putative L-type amino acid transporter 1-like protein MLAS OS=Homo sapiens GN=SLC7A5P1 PE=5 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 62/83 (74%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           VGA CY+ELG  ISKSG DYAY++  +G   AF++LWIE +++RP SQ IVAL F+ Y L
Sbjct: 98  VGALCYAELGTTISKSGGDYAYMLDVYGSLPAFLKLWIELLVIRPSSQYIVALVFATYLL 157

Query: 77  KPFFPTCDPPDESVRLLAVCCIY 99
           KP FP+C  P+E+ +L+A  C++
Sbjct: 158 KPLFPSCPVPEEAAKLMACHCVH 180

Homo sapiens (taxid: 9606)

>sp|A1L3M3|YLAT2_XENLA Y+L amino acid transporter 2 OS=Xenopus laevis GN=slc7a6 PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 61/82 (74%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           +GA CY+ELG  I KSGA YAYI+  FG F+AFIRLW   +I+ P SQA++A+TF+ Y +
Sbjct: 88  IGAPCYAELGTTIKKSGASYAYILEAFGGFVAFIRLWTSLLIIEPTSQAVIAITFANYLV 147

Query: 77  KPFFPTCDPPDESVRLLAVCCI 98
           +P FP+C+PP  + RL+A  C+
Sbjct: 148 QPVFPSCNPPYMASRLIAAACV 169

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids.

Xenopus laevis (taxid: 8355)

>sp|Q9Z1K8|YLAT1_MOUSE Y+L amino acid transporter 1 OS=Mus musculus GN=Slc7a7 PE=1 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/81 (56%), Positives = 58/81 (71%)

Query: 18  GAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALK 77
           GA CY+ELG  I KSGA YAYI+  FG FLAFIRLW   +I+ P SQA++A+TF+ Y ++
Sbjct: 87  GALCYAELGTTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAVIAITFANYMVQ 146

Query: 78  PFFPTCDPPDESVRLLAVCCI 98
           P FP+C  P  + RLLA  CI
Sbjct: 147 PLFPSCGAPYAAGRLLAAACI 167

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Plays a role in nitric oxide synthesis via transport of L-arginine, and is involved in the transport of L-arginine in monocytes.

Mus musculus (taxid: 10090)

>sp|Q9R0S5|YLAT1_RAT Y+L amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a7 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/81 (56%), Positives = 58/81 (71%)

Query: 18  GAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALK 77
           GA CY+ELG  I KSGA YAYI+  FG FLAFIRLW   +I+ P SQA++A+TF+ Y ++
Sbjct: 89  GALCYAELGTTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAVIAITFANYMVQ 148

Query: 78  PFFPTCDPPDESVRLLAVCCI 98
           P FP+C  P  + RLLA  CI
Sbjct: 149 PLFPSCGAPYAAGRLLAAACI 169

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Plays a role in nitric oxide synthesis via transport of L-arginine, and is involved in the transport of L-arginine in monocytes.

Rattus norvegicus (taxid: 10116)

>sp|Q28I80|YLAT2_XENTR Y+L amino acid transporter 2 OS=Xenopus tropicalis GN=slc7a6 PE=2 SV=1

 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 60/82 (73%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           +GA CY+ELG  I KSGA YAYI+  FG F+AFIRLW   +I+ P SQA++A+TF+ Y +
Sbjct: 88  IGALCYAELGTTIKKSGASYAYILEAFGDFVAFIRLWTSLLIIEPTSQAVIAITFANYLV 147

Query: 77  KPFFPTCDPPDESVRLLAVCCI 98
           +P FP+C PP  + RL+A  C+
Sbjct: 148 QPVFPSCYPPYMASRLIAAACV 169

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids.

Xenopus tropicalis (taxid: 8364)

>sp|Q9UM01|YLAT1_HUMAN Y+L amino acid transporter 1 OS=Homo sapiens GN=SLC7A7 PE=1 SV=2

 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 58/81 (71%)

Query: 18  GAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALK 77
           GA CY+ELG  I KSGA YAYI+  FG FLAFIRLW   +I+ P SQAI+A+TF+ Y ++
Sbjct: 86  GALCYAELGTTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAIIAITFANYMVQ 145

Query: 78  PFFPTCDPPDESVRLLAVCCI 98
           P FP+C  P  + RLLA  CI
Sbjct: 146 PLFPSCFAPYAASRLLAAACI 166

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Plays a role in nitric oxide synthesis in human umbilical vein endothelial cells (HUVECs) via transport of L-arginine. Involved in the transport of L-arginine in monocytes.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
242017985	493	large neutral amino acids transporter, p	0.736	0.170	0.892	8e-39
312385121	557	hypothetical protein AND_01149 [Anophele	0.719	0.147	0.853	1e-37
157167695	491	cationic amino acid transporter [Aedes a	0.719	0.167	0.865	2e-37
332024928	564	Y+L amino acid transporter 2 [Acromyrmex	0.745	0.150	0.823	7e-37
322789846	491	hypothetical protein SINV_09088 [Solenop	0.745	0.173	0.835	8e-37
118794426	497	AGAP001627-PA [Anopheles gambiae str. PE	0.719	0.164	0.853	1e-36
194904946	520	GG11805 [Drosophila erecta] gi|190655727	0.719	0.157	0.853	2e-36
198450346	526	GA27017 [Drosophila pseudoobscura pseudo	0.719	0.155	0.853	2e-36
195165844	526	GL27248 [Drosophila persimilis] gi|19410	0.719	0.155	0.853	2e-36
195505440	533	GE10940 [Drosophila yakuba] gi|194185606	0.719	0.153	0.865	2e-36

>gi|242017985|ref|XP_002429464.1| large neutral amino acids transporter, putative [Pediculus humanus corporis] gi|212514396|gb|EEB16726.1| large neutral amino acids transporter, putative [Pediculus humanus corporis]

 Score =  164 bits (414), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 75/84 (89%), Positives = 80/84 (95%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           VGAYCY+ELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIY L
Sbjct: 101 VGAYCYAELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYVL 160

Query: 77  KPFFPTCDPPDESVRLLAVCCIYS 100
           KPFFP C+PP+ES+RLLA CCI +
Sbjct: 161 KPFFPECEPPEESIRLLACCCIMT 184

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385121|gb|EFR29695.1| hypothetical protein AND_01149 [Anopheles darlingi]

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/82 (85%), Positives = 75/82 (91%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           VGAYCY+ELG MI KSGADYAYIM TFGPFLAFIRLWIECMIVRPCSQAIVALTFS+Y L
Sbjct: 93  VGAYCYAELGTMIKKSGADYAYIMETFGPFLAFIRLWIECMIVRPCSQAIVALTFSVYVL 152

Query: 77  KPFFPTCDPPDESVRLLAVCCI 98
           KPFFP C PP+++ RLLAVCCI
Sbjct: 153 KPFFPDCQPPEDAARLLAVCCI 174

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157167695|ref|XP_001655584.1| cationic amino acid transporter [Aedes aegypti] gi|108881999|gb|EAT46224.1| AAEL002557-PA [Aedes aegypti]

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/82 (86%), Positives = 75/82 (91%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           VGAYCY+ELG MI KSGADYAYIM TFGPFLAFIRLWIECMIVRPCSQAIVALTFS+Y L
Sbjct: 85  VGAYCYAELGTMIKKSGADYAYIMETFGPFLAFIRLWIECMIVRPCSQAIVALTFSVYVL 144

Query: 77  KPFFPTCDPPDESVRLLAVCCI 98
           KPFFP C PPD++ RLLAVCCI
Sbjct: 145 KPFFPECQPPDDAARLLAVCCI 166

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024928|gb|EGI65116.1| Y+L amino acid transporter 2 [Acromyrmex echinatior]

 Score =  157 bits (398), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/85 (82%), Positives = 77/85 (90%)

Query: 14  HDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSI 73
           +  +GAYCY+ELGCMI KSGADYAYIM TFGPFLAFIRLW+ECMIVRPCSQAIVALTFS+
Sbjct: 79  YSMIGAYCYAELGCMIKKSGADYAYIMETFGPFLAFIRLWVECMIVRPCSQAIVALTFSV 138

Query: 74  YALKPFFPTCDPPDESVRLLAVCCI 98
           Y LKP FP C PP+ESVR+LAVCCI
Sbjct: 139 YVLKPIFPDCTPPEESVRMLAVCCI 163

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789846|gb|EFZ14993.1| hypothetical protein SINV_09088 [Solenopsis invicta]

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 71/85 (83%), Positives = 76/85 (89%)

Query: 14  HDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSI 73
           +  +GAYCY+ELGCMI KSGADYAYIM TFGPFLAF+RLWIECMIVRPCSQAIVALTFSI
Sbjct: 79  YSMIGAYCYAELGCMIKKSGADYAYIMETFGPFLAFVRLWIECMIVRPCSQAIVALTFSI 138

Query: 74  YALKPFFPTCDPPDESVRLLAVCCI 98
           Y LKP FP C PPDE VR+LAVCCI
Sbjct: 139 YVLKPLFPDCMPPDEPVRILAVCCI 163

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118794426|ref|XP_321470.3| AGAP001627-PA [Anopheles gambiae str. PEST] gi|116116291|gb|EAA00996.3| AGAP001627-PA [Anopheles gambiae str. PEST]

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/82 (85%), Positives = 75/82 (91%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           VGAYCY+ELG MI KSGADYAYIM TFGPFLAFIRLWIECMIVRPCSQAIVALTFS+Y L
Sbjct: 91  VGAYCYAELGTMIKKSGADYAYIMETFGPFLAFIRLWIECMIVRPCSQAIVALTFSVYVL 150

Query: 77  KPFFPTCDPPDESVRLLAVCCI 98
           KPFFP C PP+++ RLLAVCCI
Sbjct: 151 KPFFPECQPPEDAARLLAVCCI 172

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194904946|ref|XP_001981089.1| GG11805 [Drosophila erecta] gi|190655727|gb|EDV52959.1| GG11805 [Drosophila erecta]

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/82 (85%), Positives = 75/82 (91%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           VGAYCY+ELG MI+KSGADYAYIM TFGPF+AFIRLWIECMIVRPCSQAIVALTFS Y L
Sbjct: 93  VGAYCYAELGTMITKSGADYAYIMETFGPFMAFIRLWIECMIVRPCSQAIVALTFSTYVL 152

Query: 77  KPFFPTCDPPDESVRLLAVCCI 98
           KPFFP C PP++S RLLAVCCI
Sbjct: 153 KPFFPECTPPEDSARLLAVCCI 174

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198450346|ref|XP_002137078.1| GA27017 [Drosophila pseudoobscura pseudoobscura] gi|198130996|gb|EDY67636.1| GA27017 [Drosophila pseudoobscura pseudoobscura]

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/82 (85%), Positives = 75/82 (91%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           VGAYCY+ELG MI+KSGADYAYIM TFGPF+AFIRLWIECMIVRPCSQAIVALTFS Y L
Sbjct: 97  VGAYCYAELGTMITKSGADYAYIMETFGPFMAFIRLWIECMIVRPCSQAIVALTFSTYVL 156

Query: 77  KPFFPTCDPPDESVRLLAVCCI 98
           KPFFP C PP++S RLLAVCCI
Sbjct: 157 KPFFPECSPPEDSARLLAVCCI 178

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195165844|ref|XP_002023748.1| GL27248 [Drosophila persimilis] gi|194105908|gb|EDW27951.1| GL27248 [Drosophila persimilis]

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/82 (85%), Positives = 75/82 (91%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           VGAYCY+ELG MI+KSGADYAYIM TFGPF+AFIRLWIECMIVRPCSQAIVALTFS Y L
Sbjct: 97  VGAYCYAELGTMITKSGADYAYIMETFGPFMAFIRLWIECMIVRPCSQAIVALTFSTYVL 156

Query: 77  KPFFPTCDPPDESVRLLAVCCI 98
           KPFFP C PP++S RLLAVCCI
Sbjct: 157 KPFFPECSPPEDSARLLAVCCI 178

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195505440|ref|XP_002099505.1| GE10940 [Drosophila yakuba] gi|194185606|gb|EDW99217.1| GE10940 [Drosophila yakuba]

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/82 (86%), Positives = 75/82 (91%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           VGAYCY+ELG MI+KSGADYAYIM TFGPF+AFIRLWIECMIVRPCSQAIVALTFS Y L
Sbjct: 97  VGAYCYAELGTMITKSGADYAYIMETFGPFMAFIRLWIECMIVRPCSQAIVALTFSTYVL 156

Query: 77  KPFFPTCDPPDESVRLLAVCCI 98
           KPFFP C PPD+S RLLAVCCI
Sbjct: 157 KPFFPECAPPDDSARLLAVCCI 178

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
FB|FBgn0039844	505	CG1607 [Drosophila melanogaste	0.692	0.156	0.848	1.2e-33
WB|WBGene00000002	493	aat-1 [Caenorhabditis elegans	0.692	0.160	0.683	3e-27
WB|WBGene00000004	493	aat-3 [Caenorhabditis elegans	0.684	0.158	0.666	6.7e-26
FB|FBgn0028425	500	JhI-21 "JhI-21" [Drosophila me	0.684	0.156	0.589	2e-23
MGI|MGI:2142598	515	Slc7a6 "solute carrier family	0.684	0.151	0.641	4.9e-23
RGD|1309193	515	Slc7a6 "solute carrier family	0.684	0.151	0.641	4.9e-23
ZFIN|ZDB-GENE-070705-534	490	si:dkeyp-120h9.1 "si:dkeyp-120	0.675	0.157	0.649	1.1e-22
UNIPROTKB|E7EPZ8	229	SLC7A6 "Y+L amino acid transpo	0.684	0.340	0.589	3.4e-22
UNIPROTKB|H3BNF5	214	SLC7A6 "Y+L amino acid transpo	0.684	0.364	0.589	3.4e-22
UNIPROTKB|H3BRZ8	127	SLC7A6 "Y+L amino acid transpo	0.684	0.614	0.589	3.4e-22

FB|FBgn0039844 CG1607 [Drosophila melanogaster (taxid:7227)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 67/79 (84%), Positives = 72/79 (91%)

Query:    17 VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
             VGAYCY+ELG MI+KSGADYAYIM TFGPF+AFIRLWIECMIVRPCSQAIVALTFS Y L
Sbjct:    97 VGAYCYAELGTMITKSGADYAYIMETFGPFMAFIRLWIECMIVRPCSQAIVALTFSTYVL 156

Query:    77 KPFFPTCDPPDESVRLLAV 95
             KPFFP C PP++S RLLAV
Sbjct:   157 KPFFPECTPPEDSARLLAV 175

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=ISS

WB|WBGene00000002 aat-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 309 (113.8 bits), Expect = 3.0e-27, P = 3.0e-27
 Identities = 54/79 (68%), Positives = 64/79 (81%)

Query:    17 VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
             +GAYCY+ELG +I KSG DYAYIM  FGPF+AFIRLWIE ++VRPC+  IVALTF+IY L
Sbjct:    80 IGAYCYAELGTLIKKSGGDYAYIMEAFGPFVAFIRLWIEAIVVRPCTVTIVALTFAIYGL 139

Query:    77 KPFFPTCDPPDESVRLLAV 95
             +PFFP C PPD    LLA+
Sbjct:   140 RPFFPDCAPPDVVAELLAI 158

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

WB|WBGene00000004 aat-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 297 (109.6 bits), Expect = 6.7e-26, P = 6.7e-26
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:    17 VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
             +GA+CY+ELG +I KSG DYAYIM  FGPFLAF+RLWIE ++VRPC+  IVALTF+IY L
Sbjct:    80 IGAFCYAELGTLIRKSGGDYAYIMEAFGPFLAFLRLWIESIVVRPCTATIVALTFAIYML 139

Query:    77 KPFFPTCDPPDESVRLLA 94
             KPF+P CD P  S  L+A
Sbjct:   140 KPFYPDCDSPPLSTELIA 157

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019915 "lipid storage" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0028425 JhI-21 "JhI-21" [Drosophila melanogaster (taxid:7227)]

 Score = 275 (101.9 bits), Expect = 2.0e-23, P = 2.0e-23
 Identities = 46/78 (58%), Positives = 63/78 (80%)

Query:    17 VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
             +GA CY+ELG  I++SG DYAY++ +FGP + F+RLWI  +I+RP +Q IVAL+F+ YA+
Sbjct:    89 IGALCYAELGTCITRSGGDYAYLLVSFGPLVGFLRLWIALLIIRPTTQTIVALSFAHYAV 148

Query:    77 KPFFPTCDPPDESVRLLA 94
             KPFFP CDPP  +V+LLA
Sbjct:   149 KPFFPECDPPQNAVKLLA 166

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=NAS

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0060356 "leucine import" evidence=IMP

MGI|MGI:2142598 Slc7a6 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 6" [Mus musculus (taxid:10090)]

 Score = 272 (100.8 bits), Expect = 4.9e-23, P = 4.9e-23
 Identities = 50/78 (64%), Positives = 61/78 (78%)

Query:    17 VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
             VGA CY+ELG  I+KSGA YAYI+  FG F+AFIRLW+  +IV P SQAI+A+TF+ Y +
Sbjct:    93 VGALCYAELGTTITKSGASYAYILEAFGGFIAFIRLWVSLLIVEPTSQAIIAITFANYII 152

Query:    77 KPFFPTCDPPDESVRLLA 94
             KP FPTCDPP  + RLLA
Sbjct:   153 KPSFPTCDPPYVACRLLA 170

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1309193 Slc7a6 "solute carrier family 7 (amino acid transporter light chain, y+L system), member 6" [Rattus norvegicus (taxid:10116)]

 Score = 272 (100.8 bits), Expect = 4.9e-23, P = 4.9e-23
 Identities = 50/78 (64%), Positives = 61/78 (78%)

Query:    17 VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
             VGA CY+ELG  I+KSGA YAYI+  FG F+AFIRLW+  +IV P SQAI+A+TF+ Y +
Sbjct:    93 VGALCYAELGTTITKSGASYAYILEAFGGFIAFIRLWVSLLIVEPTSQAIIAITFANYII 152

Query:    77 KPFFPTCDPPDESVRLLA 94
             KP FPTCDPP  + RLLA
Sbjct:   153 KPSFPTCDPPYVACRLLA 170

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-070705-534 si:dkeyp-120h9.1 "si:dkeyp-120h9.1" [Danio rerio (taxid:7955)]

 Score = 268 (99.4 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 50/77 (64%), Positives = 59/77 (76%)

Query:    18 GAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALK 77
             GA CY+ELG  I KSGA YAYI+ TFG FLAFIRLW   MIV P  QA++ALTF+ Y +K
Sbjct:    65 GALCYAELGTTIRKSGASYAYILETFGGFLAFIRLWTSLMIVEPACQAVIALTFANYLVK 124

Query:    78 PFFPTCDPPDESVRLLA 94
             PFFPTC  P ++VRL+A
Sbjct:   125 PFFPTCPAPYDAVRLIA 141

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E7EPZ8 SLC7A6 "Y+L amino acid transporter 2" [Homo sapiens (taxid:9606)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 46/78 (58%), Positives = 60/78 (76%)

Query:    17 VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
             VGA CY+ELG  I+KSGA YAYI+  FG F+AFIRLW+  ++V P  QAI+A+TF+ Y +
Sbjct:    93 VGALCYAELGTTITKSGASYAYILEAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYII 152

Query:    77 KPFFPTCDPPDESVRLLA 94
             +P FP+CDPP  + RLLA
Sbjct:   153 QPSFPSCDPPYLACRLLA 170

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H3BNF5 SLC7A6 "Y+L amino acid transporter 2" [Homo sapiens (taxid:9606)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 46/78 (58%), Positives = 60/78 (76%)

Query:    17 VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
             VGA CY+ELG  I+KSGA YAYI+  FG F+AFIRLW+  ++V P  QAI+A+TF+ Y +
Sbjct:    93 VGALCYAELGTTITKSGASYAYILEAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYII 152

Query:    77 KPFFPTCDPPDESVRLLA 94
             +P FP+CDPP  + RLLA
Sbjct:   153 QPSFPSCDPPYLACRLLA 170

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H3BRZ8 SLC7A6 "Y+L amino acid transporter 2" [Homo sapiens (taxid:9606)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 46/78 (58%), Positives = 60/78 (76%)

Query:    17 VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
             VGA CY+ELG  I+KSGA YAYI+  FG F+AFIRLW+  ++V P  QAI+A+TF+ Y +
Sbjct:    46 VGALCYAELGTTITKSGASYAYILEAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYII 105

Query:    77 KPFFPTCDPPDESVRLLA 94
             +P FP+CDPP  + RLLA
Sbjct:   106 QPSFPSCDPPYLACRLLA 123

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q92536	YLAT2_HUMAN	No assigned EC number	0.5853	0.7192	0.1592	yes	N/A
Q59I64	YLAT2_DANRE	No assigned EC number	0.5731	0.7192	0.1752	yes	N/A
Q8BGK6	YLAT2_MOUSE	No assigned EC number	0.6219	0.7192	0.1592	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	114
TIGR00911	501	TIGR00911, 2A0308, L-type amino acid transporter	1e-32
TIGR00909	429	TIGR00909, 2A0306, amino acid transporter	7e-06
pfam13520	425	pfam13520, AA_permease_2, Amino acid permease	4e-05
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	5e-05
PRK11357	445	PRK11357, frlA, putative fructoselysine transporte	3e-04
TIGR00906	557	TIGR00906, 2A0303, cationic amino acid transport p	7e-04

>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter

 Score =  118 bits (297), Expect = 1e-32
 Identities = 46/82 (56%), Positives = 61/82 (74%)

Query: 17  VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           VGA  Y+ELG  I KSG +Y YI+  FGP LAF+RLWIE +++RP SQA+ AL F+IY L
Sbjct: 92  VGALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYIL 151

Query: 77  KPFFPTCDPPDESVRLLAVCCI 98
            P FP C+ P+ ++RL+AV C+
Sbjct: 152 TPVFPDCEVPEWAIRLVAVLCV 173

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501

>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 19  AYCYSELGCMISKSGADYAYIMTTFGPFLAFI---RLWIECMIVRPCSQAIVALTFSIY 74
           A  Y+EL  M+  +G+ Y Y     G   AFI    LW+E  +    + A VA+ +  Y
Sbjct: 53  ALVYAELAAMLPVAGSPYTYAYEAMGELTAFIIGWSLWLEYGV----AVAAVAVGWGGY 107

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429

>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 18  GAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALK 77
            A  Y+EL     ++G  Y ++   FG  +AFI  W   +       +  ++    Y L 
Sbjct: 47  VALVYAELSSAFPRNGGIYVWLKNAFGKPVAFIAAWFNWLAYILGLASSSSVAAQ-YLLS 105

Query: 78  PFFPTCDPPDESVRLLAVCCI 98
            FFP           +A+  +
Sbjct: 106 AFFPDLVGNTWLTYGIAIAIL 126

Length = 425

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 19 AYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWI 54
          A  Y+EL   I  +G  YAY     GP L F+  W+
Sbjct: 62 ALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGWL 97

Length = 466

>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 21  CYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIY 74
            Y+EL     ++GADY Y+       LAF+  W         S +I+AL     
Sbjct: 62  VYAELSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSN 115

Length = 445

>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 19  AYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLW 53
            +CY+E G  + K+G+ Y Y   T G   AFI  W
Sbjct: 79  GFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGW 113

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
KOG1287|consensus	479		99.87
TIGR00911	501	2A0308 L-type amino acid transporter.	99.75
PRK10655	438	potE putrescine transporter; Provisional	99.7
PRK10644	445	arginine:agmatin antiporter; Provisional	99.67
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	99.66
PRK11357	445	frlA putative fructoselysine transporter; Provisio	99.65
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	99.65
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	99.65
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.64
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.64
PRK11021	410	putative transporter; Provisional	99.63
TIGR00907	482	2A0304 amino acid permease (GABA permease).	99.63
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.61
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.61
KOG1289|consensus	550		99.6
PRK11387	471	S-methylmethionine transporter; Provisional	99.6
PRK10249	458	phenylalanine transporter; Provisional	99.6
PRK10197	446	gamma-aminobutyrate transporter; Provisional	99.6
PRK10238	456	aromatic amino acid transporter; Provisional	99.6
TIGR00930	953	2a30 K-Cl cotransporter.	99.58
PRK15049	499	L-asparagine permease; Provisional	99.58
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.57
PRK10746	461	putative transport protein YifK; Provisional	99.56
PRK10580	457	proY putative proline-specific permease; Provision	99.56
PRK10836	489	lysine transporter; Provisional	99.52
TIGR00909	429	2A0306 amino acid transporter.	99.51
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	99.5
COG0531	466	PotE Amino acid transporters [Amino acid transport	99.49
TIGR00913	478	2A0310 amino acid permease (yeast).	99.48
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	99.48
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.42
PRK15238	496	inner membrane transporter YjeM; Provisional	99.4
PHA02764	399	hypothetical protein; Provisional	99.3
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.2
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	99.17
KOG1286|consensus	554		99.09
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.96
TIGR00912	359	2A0309 spore germination protein (amino acid perme	98.9
COG0833	541	LysP Amino acid transporters [Amino acid transport	98.87
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	98.07
TIGR00814	397	stp serine transporter. The HAAAP family includes	97.78
PF03845	320	Spore_permease: Spore germination protein; InterPr	97.11
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	96.66
KOG2083|consensus	643		95.69
PRK15132	403	tyrosine transporter TyrP; Provisional	94.91
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	94.33
PRK13629	443	threonine/serine transporter TdcC; Provisional	94.3
PRK10483	414	tryptophan permease; Provisional	92.23
KOG2082|consensus	1075		91.69
PRK09664	415	tryptophan permease TnaB; Provisional	91.11
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	88.24
PF01235	416	Na_Ala_symp: Sodium:alanine symporter family; Inte	88.02
COG1115	452	AlsT Na+/alanine symporter [Amino acid transport a	82.36

>KOG1287|consensus

Probab=99.87  E-value=2.1e-21  Score=150.52  Aligned_cols=106  Identities=44%  Similarity=0.753  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCCh
Q psy5072           8 PAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPPD   87 (114)
Q Consensus         8 ~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~~   87 (114)
                      -++++++++..|+||||||+++|++||+|.|+.++||+.++|+.+|..+++..|.+.|..+.+|++|..++++|++++|+
T Consensus        53 Wv~~gi~s~~galcyaELGT~ipksGgd~ayi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~  132 (479)
T KOG1287|consen   53 WVFCGIISIIGALCYAELGTSIPKSGGDYAYISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPR  132 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCch
Confidence            46789999999999999999999999999999999999999999999999999999999999999998888999888999


Q ss_pred             hHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          88 ESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        88 ~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +..++++.+++++ +++|+.++|+-+|
T Consensus       133 ~~~~lla~~~l~~lt~~n~~~V~~a~~  159 (479)
T KOG1287|consen  133 VASKLLAAALLVLLTLINSFSVKWATR  159 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence            9999999999999 9999999996543

>TIGR00911 2A0308 L-type amino acid transporter

Probab=99.75  E-value=2.5e-17  Score=128.96  Aligned_cols=107  Identities=46%  Similarity=0.838  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072           7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP   86 (114)
Q Consensus         7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~   86 (114)
                      ...+++++.++.+++|+|+++++|++||.|.|+++.+||..||+.+|.++....+...+..+..+++|+.+.++|+...+
T Consensus        82 ~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~  161 (501)
T TIGR00911        82 MWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVP  161 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            35688899999999999999999999999999999999999999999987655677788888999999865556766566


Q ss_pred             hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          87 DESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      .+..+.++++++++ +.+|++|+|..+|
T Consensus       162 ~~~~~~i~~~~i~~~~~ln~~Gvk~~~~  189 (501)
T TIGR00911       162 EWAIRLVAVLCVLLLTLVNCLSVKWATR  189 (501)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            77778888888888 9999999998765

>PRK10655 potE putrescine transporter; Provisional

Probab=99.70  E-value=3.2e-16  Score=120.70  Aligned_cols=104  Identities=13%  Similarity=0.129  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072           7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP   86 (114)
Q Consensus         7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~   86 (114)
                      .+.+++++.++.++||+||++++|++||.|.|+++.+||..||+.||.+++. +.......+.++.+|+.. ++|. +.+
T Consensus        43 ~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~-~~~~~~~~a~~~~~y~~~-~~~~-~~~  119 (438)
T PRK10655         43 SWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVS-LLIANVAIAISAVGYGTE-LFGA-TLS  119 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hccc-ccc
Confidence            5788999999999999999999999999999999999999999999998764 344455557777889865 4553 233


Q ss_pred             hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          87 DESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      ++...++.++++++ +.+|++|+|..+|
T Consensus       120 ~~~~~~~~~~~l~~~~~ln~~g~~~~~~  147 (438)
T PRK10655        120 PVQICLATIGVLWLCTVANFGGARITGQ  147 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            45566677777777 8999999998765

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.67  E-value=1e-15  Score=118.24  Aligned_cols=104  Identities=14%  Similarity=0.179  Sum_probs=81.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072           7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP   86 (114)
Q Consensus         7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~   86 (114)
                      .+.++++.+++.+++|+||++++|++||.|.|+++.+||..||++||.+++.. ....++.+....+|... ++|.. .+
T Consensus        45 ~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~~  121 (445)
T PRK10644         45 GWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLSY-FFPIL-KD  121 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-Hhccc-CC
Confidence            56788999999999999999999999999999999999999999999987643 33444455556677653 55532 23


Q ss_pred             hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          87 DESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      ++...+++++++++ +.+|++|+|...|
T Consensus       122 ~~~~~~~~~~~~~~~~~ln~~gvk~~~~  149 (445)
T PRK10644        122 PLVLTITCVVVLWIFVLLNIVGPKMITR  149 (445)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            45556667777777 8999999998765

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=99.66  E-value=2.6e-15  Score=114.77  Aligned_cols=106  Identities=25%  Similarity=0.264  Sum_probs=88.7

Q ss_pred             hHHHHHHHH-HHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072           7 CPAHINTHD-KVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP   85 (114)
Q Consensus         7 ~~~~~~l~~-~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~   85 (114)
                      ...+++++. ++.+++|+|+++++|++||.|.|+++.+||++||+.+|.+++. +....++.+..+++|+...+.|+.++
T Consensus        35 ~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (426)
T PF13520_consen   35 AWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFIVGWLYWVA-YILSLASVASSFASYLLSLFGPDLNP  113 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTTTTGGGTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhcccceeEEE-eeccccccccchhhhhhhcccccccc
Confidence            345677777 7999999999999999999999999999999999999999764 67777788889999998765555444


Q ss_pred             ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          86 PDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +++....++++++++ +.+|++|.|...|
T Consensus       114 ~~~~~~~i~~~~~~~~~~l~~~g~~~~~~  142 (426)
T PF13520_consen  114 SPWPQFLIAIILILLFTLLNLLGIKLSGK  142 (426)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             ccchheeeeecccccceEeeechhhhhhh
Confidence            566778888888888 9999999998764

...

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=99.65  E-value=1.8e-15  Score=116.88  Aligned_cols=103  Identities=19%  Similarity=0.097  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072           7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP   86 (114)
Q Consensus         7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~   86 (114)
                      .++++++++++.++||+|+++++|++||.|.|+++.+||..||+.+|..++...+...+..+..+++|+.. .+|.   +
T Consensus        48 ~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~-~~~~---~  123 (445)
T PRK11357         48 AFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGF-LTPI---D  123 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC---c
Confidence            47889999999999999999999999999999999999999999999866555566778889999999864 4442   2


Q ss_pred             hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          87 DESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      ....+.++.+++.+ +.+|.+|+|...|
T Consensus       124 ~~~~~~~~~~~~~~~~~ln~~gv~~~~~  151 (445)
T PRK11357        124 PLLGKFIAAGLIIAFMLLHLRSVEGGAA  151 (445)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            33345666666666 8999999987654

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=99.65  E-value=2.4e-15  Score=117.23  Aligned_cols=106  Identities=16%  Similarity=0.191  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------
Q psy5072           7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPF-------   79 (114)
Q Consensus         7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~-------   79 (114)
                      ++.++++.+++++++++||++++|++||.|+|+++.+||..||++||.+++. +....+..+.++..++...+       
T Consensus        52 ~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g~~~gf~~gW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (475)
T TIGR03428        52 TWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEVIGWFAGWFMIIA-QIVTAAAAAIALQVVLPNIWSGFQIIG  130 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcCccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence            5778999999999999999999999999999999999999999999998764 55666666666665553211       


Q ss_pred             -CCCCC-C-ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          80 -FPTCD-P-PDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        80 -~p~~~-~-~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                       .|++. + +.++..+++.+++++ +.+|++|+|...|
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~  168 (475)
T TIGR03428       131 EDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSR  168 (475)
T ss_pred             cCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence             11221 1 124567777777777 8999999998764

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00908 2A0305 ethanolamine permease

Probab=99.65  E-value=2.4e-15  Score=115.98  Aligned_cols=100  Identities=18%  Similarity=0.210  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072           7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP   86 (114)
Q Consensus         7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~   86 (114)
                      +..+++++.++.+++|+|+++++|++||.|.|+++.+||..||+.||.+++ .+....++.+..+++|+.. ++|+.  +
T Consensus        45 ~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~~~gf~~gw~~~~-~~~~~~~~~a~~~~~~l~~-~~p~~--~  120 (442)
T TIGR00908        45 ATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGPWGGFLAGTAILI-EFAFAPPAIACFIGAYCES-LFPVG--P  120 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhccC--c
Confidence            456677788899999999999999999999999999999999999999876 5777888999999999975 55642  2


Q ss_pred             hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          87 DESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      .   ...+.+++++ +.+|++|+|..+|
T Consensus       121 ~---~~~~~~~~~~~~~ln~~g~~~~~~  145 (442)
T TIGR00908       121 G---WLAALVFYIVFIGINILGVGEAAK  145 (442)
T ss_pred             h---hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2   3455666666 8999999998765

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.64  E-value=3.9e-15  Score=114.93  Aligned_cols=103  Identities=15%  Similarity=0.144  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072           7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP   86 (114)
Q Consensus         7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~   86 (114)
                      .++++++.+++.++|++||++++|++||.|.|+++ +||.+||..+|.++...+ ....+.+.++.+|+.. ++|..+. 
T Consensus        42 ~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~~gf~~gw~~~~~~~-~~~~~~~~~~~~y~~~-~~p~~~~-  117 (435)
T PRK10435         42 GWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPAFGFQTGVLYYHANW-IGNLAIGITAVSYLST-FFPVLND-  117 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HccccCC-
Confidence            57889999999999999999999999999999999 899999999999876433 4455667778889865 5664432 


Q ss_pred             hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          87 DESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +....+++++++++ +++|++|+|..++
T Consensus       118 ~~~~~~~~~~i~~~~~~ln~~gvk~~~~  145 (435)
T PRK10435        118 PIPAGIACIAIVWVFTFVNMLGGTWVSR  145 (435)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            23344556667777 8999999998764

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.64  E-value=2.9e-15  Score=116.68  Aligned_cols=105  Identities=16%  Similarity=0.135  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhcccccc-CchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCC-
Q psy5072           7 CPAHINTHDKVGAYCYSELGCMISK-SGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCD-   84 (114)
Q Consensus         7 ~~~~~~l~~~~~al~~aEL~s~~P~-~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~-   84 (114)
                      .++++++.+++.+++|+|+++++|+ +||.|.|+++.+||..||+.||.+++. .....+..+..+.+|+.. ++|..+ 
T Consensus        46 ~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~~~gf~~gw~~~~~-~~~~~~~~~~~~~~~l~~-~~p~~~~  123 (473)
T TIGR00905        46 GWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGPYIGFMSGWGYWLS-AWIGNVAYAVLLFSALGY-FFPLFGS  123 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HhhhhcC
Confidence            5788999999999999999999999 999999999999999999999998754 445556667777778764 455322 


Q ss_pred             CChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          85 PPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        85 ~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      .+++...+.+++++++ +.+|.+|+|..+|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~  153 (473)
T TIGR00905       124 GNPVPSILGASVLLWVFTFLVLRGVRQAAF  153 (473)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            1234556667777777 8999999998775

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK11021 putative transporter; Provisional

Probab=99.63  E-value=4.7e-15  Score=113.47  Aligned_cols=103  Identities=12%  Similarity=0.081  Sum_probs=80.6

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP   85 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~   85 (114)
                      ..+++++++.++.+++|+|+++++|++||.|.|+++.+||.+||+.||.++.. .+...++......+|+.. ++|.   
T Consensus        36 ~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~~gw~~~~~-~~~~~~~~~~~~~~~~~~-~~~~---  110 (410)
T PRK11021         36 WAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRVTGWLFLSV-IPVGLPAALQIAAGFGQA-LFGW---  110 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHHH-HcCC---
Confidence            46789999999999999999999999999999999999999999999998753 444444444445667754 4442   


Q ss_pred             ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          86 PDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +.+....++.+++++ +.+|++|+|..+|
T Consensus       111 ~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~  139 (410)
T PRK11021        111 SSWQLLLAELLTLALLWLLNLRGASSSAN  139 (410)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            223345566666777 8999999998765

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=99.63  E-value=3.3e-15  Score=116.37  Aligned_cols=107  Identities=14%  Similarity=0.087  Sum_probs=86.8

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFG----PFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPF--   79 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g----~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~--   79 (114)
                      ..+++++++.++++++++||++++|++||.|.|+++.+|    +..+|++||.+++ .+....++.+...++|+...+  
T Consensus        51 ~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~g~~~g~~~~f~~gW~~~~-~~~~~~a~~~~~~~~~~~~~~~~  129 (482)
T TIGR00907        51 WGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLAPPRQMPFASWMTGWFNLA-GQVAGTASTDLSVAQLILGIVSL  129 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhcccccccceeHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            357889999999999999999999999999999999876    5779999999875 467777888888888886532  


Q ss_pred             -CCC--CCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          80 -FPT--CDPPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        80 -~p~--~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                       .++  +.++++...+++++++++ +.+|++|+|.+.+
T Consensus       130 ~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~~  167 (482)
T TIGR00907       130 TTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKWLPR  167 (482)
T ss_pred             cCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhHHHH
Confidence             222  334456667777777787 9999999998754

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.61  E-value=9.5e-15  Score=113.04  Aligned_cols=101  Identities=12%  Similarity=0.075  Sum_probs=84.6

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP   85 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~   85 (114)
                      ..+++++++.++.++|++||++++|++||.|.|+++.+||..||+.||.+++. +....++++.++++|+.. ++|+  .
T Consensus        49 i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~~~gf~~gw~~~~~-~~~~~~~~~~~~~~~l~~-~~~~--~  124 (452)
T TIGR01773        49 LAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGRWAGFTIGWLYWWF-WVLVIPLEAIAAAGILQY-WFPD--I  124 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hcCc--C
Confidence            36788999999999999999999999999999999999999999999999764 667778888889988864 5553  2


Q ss_pred             ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          86 PDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +   ...++++++++ +.+|++|+|...|
T Consensus       125 ~---~~~~~~~~~~~~~~~n~~gv~~~~~  150 (452)
T TIGR01773       125 P---LWLFSLILTIVLTLTNLYSVKSYGE  150 (452)
T ss_pred             c---HHHHHHHHHHHHHHHHHHhcchhhH
Confidence            2   34566777777 8999999987654

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.61  E-value=5.5e-15  Score=117.54  Aligned_cols=107  Identities=22%  Similarity=0.285  Sum_probs=85.3

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCC---C
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFP---T   82 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p---~   82 (114)
                      ..++++++.+++.++||+|+++++|++||.|.|+++.+||.+||+.||..++ .+....++++.++++|+.+.+..   +
T Consensus        66 ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l-~~~~~~a~va~~~s~yl~~ll~~~~~~  144 (557)
T TIGR00906        66 LSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLIL-EYVIGTAAVARSWSAYFDELLNKQIGQ  144 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            3678999999999999999999999999999999999999999999999865 57788888999999998653310   0


Q ss_pred             C-------CCCh--hHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          83 C-------DPPD--ESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        83 ~-------~~~~--~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      .       ..+.  .....++++++++ +.+|.+|+|..+|
T Consensus       145 ~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~  185 (557)
T TIGR00906       145 FRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAW  185 (557)
T ss_pred             cccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHHH
Confidence            0       0010  1234566666777 8999999998764

>KOG1289|consensus

Probab=99.60  E-value=4e-15  Score=116.59  Aligned_cols=106  Identities=14%  Similarity=0.209  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHH----HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---h
Q psy5072           7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMT----TFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKP---F   79 (114)
Q Consensus         7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~----~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~---~   79 (114)
                      +.++++++.++++++++|++|++|++||.|.|..+    .+||..+|++||.+.+ ++.+..|++.++.++.+...   .
T Consensus        88 gwlIa~~~~i~va~slaEl~Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~-g~~~~~aSi~~S~A~~i~~~v~l~  166 (550)
T KOG1289|consen   88 GWLIAGFFSICVALSLAELCSAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYL-GQATGVASITYSLAQLILGAVSLT  166 (550)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHH-HHHhhchhhhHHHHHHHHHHHhhc
Confidence            46899999999999999999999999999999984    8899999999999865 68899999999999988763   3


Q ss_pred             CCCCCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          80 FPTCDPPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        80 ~p~~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      .|++++++++...++.+++.+ .++|+++.|+++|
T Consensus       167 np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~  201 (550)
T KOG1289|consen  167 NPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLAR  201 (550)
T ss_pred             CCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHH
Confidence            678888889999999999999 9999999999876

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.60  E-value=1.3e-14  Score=113.00  Aligned_cols=101  Identities=13%  Similarity=0.114  Sum_probs=78.7

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP   85 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~   85 (114)
                      .++.+++++++++++||+||++++|++||.|.|+++.+||..||+.||.+++. +....++...+.+.|+. .++|+  .
T Consensus        52 l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~~~gf~~gw~~~~~-~~~~~~~~~~~~~~~~~-~~~p~--~  127 (471)
T PRK11387         52 LAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGPATGYTVAWLYWLT-WTVALGSSLTAAGFCMQ-YWFPQ--V  127 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hccCc--C
Confidence            46789999999999999999999999999999999999999999999999764 55666666666666654 34553  2


Q ss_pred             ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          86 PDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +.+   ....+++++ +.+|++|+|...|
T Consensus       128 ~~~---~~~~~~~~~~~~in~~gvk~~~~  153 (471)
T PRK11387        128 PVW---PWCLLFCALIFGLNVVSTRFFAE  153 (471)
T ss_pred             cHH---HHHHHHHHHHHHHHHHhHHHHHH
Confidence            222   233344455 8999999998653

>PRK10249 phenylalanine transporter; Provisional

Probab=99.60  E-value=1.4e-14  Score=112.57  Aligned_cols=101  Identities=15%  Similarity=0.115  Sum_probs=81.7

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP   85 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~   85 (114)
                      ..+++++++++++++|++|+++++|++||.|.|+++.+||.+||+.||.+++. +....++...+.+.|+.. ++|+.  
T Consensus        58 l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~~~gf~~gw~~~~~-~~~~~~~~~~a~~~~~~~-~~~~~--  133 (458)
T PRK10249         58 LGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVM-FVLVGMAELTAAGIYMQY-WFPDV--  133 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-cCCcC--
Confidence            35789999999999999999999999999999999999999999999998775 445566777778888753 45532  


Q ss_pred             ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          86 PDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +   ....+.+++++ +.+|++|+|..+|
T Consensus       134 ~---~~~~~~~~~~l~~~lN~~gv~~~~~  159 (458)
T PRK10249        134 P---TWIWAAAFFIIINAVNLVNVRLYGE  159 (458)
T ss_pred             c---HHHHHHHHHHHHHHHHHhcchhhhh
Confidence            2   23445566666 8999999998764

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=99.60  E-value=1.6e-14  Score=111.95  Aligned_cols=101  Identities=9%  Similarity=0.047  Sum_probs=81.3

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP   85 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~   85 (114)
                      .++++++++.++.++|++||++++|++||.|.|.++.+||.+||..||.+++. +....+.++.+.+.++.. +.|+   
T Consensus        29 l~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~-~~~~~~~~~~~~~~~~~~-~~~~---  103 (446)
T PRK10197         29 LAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWF-WVLVIPLEANIAAMILHS-WVPG---  103 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh-cccc---
Confidence            46789999999999999999999999999999999999999999999999764 555666666666666543 3342   


Q ss_pred             ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          86 PDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                        .....++.+++++ +.+|++|+|...+
T Consensus       104 --~~~~~~~~~~l~~~~~lN~~gv~~~~~  130 (446)
T PRK10197        104 --IPIWLFSLVITLALTGSNLLSVKNYGE  130 (446)
T ss_pred             --CcHHHHHHHHHHHHHHHHHHhhHHHhh
Confidence              2235667777777 9999999998654

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.60  E-value=1.8e-14  Score=111.95  Aligned_cols=101  Identities=11%  Similarity=0.044  Sum_probs=83.0

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP   85 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~   85 (114)
                      ..+.+++++.+++++|++|+++++|++||.|+|.++.+||..||+.||.+++. +....++...++++|+.. ++|+  .
T Consensus        49 ~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~~~gf~~Gw~~~~~-~~~~~~~~~~~~~~~~~~-~~p~--~  124 (456)
T PRK10238         49 LGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVL-YVLVAMAELTAVGKYIQF-WYPE--I  124 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hcCc--C
Confidence            35789999999999999999999999999999999999999999999999764 667778888889999853 5553  2


Q ss_pred             ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          86 PDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +.+   ....+++++ +.+|++|+|...|
T Consensus       125 ~~~---~~~~i~~~~~~~lN~~gv~~~~~  150 (456)
T PRK10238        125 PTW---VSAAVFFVVINAINLTNVKVFGE  150 (456)
T ss_pred             cHH---HHHHHHHHHHHHHHHHhHHHHHH
Confidence            333   334444556 8999999998764

>TIGR00930 2a30 K-Cl cotransporter

Probab=99.58  E-value=2e-14  Score=119.98  Aligned_cols=106  Identities=12%  Similarity=0.086  Sum_probs=88.8

Q ss_pred             chHHHHHHHHHHHHHHHHHhccc-cccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCC-
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCM-ISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTC-   83 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~-~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~-   83 (114)
                      +.++++++++++.++||+|+++. .|++||.|.|+++++|+..||..||..++ ....+.|.++.+|++|+...+ +.. 
T Consensus       115 l~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisralGp~~Gf~iG~~~~l-a~~va~A~~~~Gf~eyl~~lf-~~~~  192 (953)
T TIGR00930       115 LIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSLGPEFGGSIGLIFAF-ANAVAVAMYVVGFAETVLDLL-RENG  192 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh-hhcc
Confidence            46889999999999999999998 99999999999999999999999999865 477889999999999998644 321 


Q ss_pred             ----CCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          84 ----DPPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        84 ----~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                          ..+....++++.+++++ +++|++|+|+.+|
T Consensus       193 ~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak  227 (953)
T TIGR00930       193 SKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENK  227 (953)
T ss_pred             cccccCccccchHHHHHHHHHHHHHHHhhHHHHHH
Confidence                11122356778877877 9999999998775

>PRK15049 L-asparagine permease; Provisional

Probab=99.58  E-value=4.1e-14  Score=111.21  Aligned_cols=102  Identities=11%  Similarity=0.084  Sum_probs=78.4

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCC-
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCD-   84 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~-   84 (114)
                      .++++++++.+++++|++||++++|++||.|.|+++.+||..||++||.+++. +....+....+.+.|... + +.+. 
T Consensus        65 l~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~~~gf~~GW~~~l~-~~~~~~~~~~a~~~~~~~-~-~~~~~  141 (499)
T PRK15049         65 LVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFIN-WAMTGIVDITAVALYMHY-W-GAFGG  141 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-h-ccCCC
Confidence            46789999999999999999999999999999999999999999999999764 444444444456666642 2 2221 


Q ss_pred             CChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          85 PPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        85 ~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      .+.   ...+.+++++ +.+|++|+|...|
T Consensus       142 ~~~---~~~~~~~~~l~~~iN~~gvk~~~~  168 (499)
T PRK15049        142 VPQ---WVFALAALTIVGTMNMIGVKWFAE  168 (499)
T ss_pred             CcH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233   3446666667 8999999998764

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.57  E-value=4.4e-14  Score=109.98  Aligned_cols=105  Identities=16%  Similarity=0.153  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccC-chhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072           7 CPAHINTHDKVGAYCYSELGCMISKS-GADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP   85 (114)
Q Consensus         7 ~~~~~~l~~~~~al~~aEL~s~~P~~-GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~   85 (114)
                      .+.++++..++.+++++||++++|++ ||.|.|.++.+||..||+.||.+|+.. .......+....+|+.. ++|....
T Consensus        40 ~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~~gf~~gw~~w~~~-~~~~~~~~~~~~~~~~~-~~p~~~~  117 (468)
T TIGR03810        40 GWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPFMGFISAWGYWLSA-WLGNVAYATLLFSTLGY-FFPIFGG  117 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcccccC
Confidence            57899999999999999999999997 599999999999999999999998753 33444455555666643 4564322


Q ss_pred             -ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          86 -PDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        86 -~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                       ++.....++.+++++ +.+|.+|+|..+|
T Consensus       118 ~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~  147 (468)
T TIGR03810       118 GNNPPSIIGASVLLWCVHFLVLRGVEGAAF  147 (468)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence             222334555556666 8999999997654

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10746 putative transport protein YifK; Provisional

Probab=99.56  E-value=5.2e-14  Score=109.59  Aligned_cols=101  Identities=11%  Similarity=0.139  Sum_probs=81.8

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP   85 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~   85 (114)
                      ..+++++++.++++++++||++++|++||.|.|+++.+||.+||..||.+++. +....++...+.++|+.. ++|+.  
T Consensus        47 l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~~~Gf~~gw~~~~~-~~~~~~~~~~a~~~~l~~-~~p~~--  122 (461)
T PRK10746         47 LAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFM-WMAVGISEITAIGVYVQF-WFPEM--  122 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-ccCCC--
Confidence            36788999999999999999999999999999999999999999999999765 555666777788889854 55642  


Q ss_pred             ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          86 PDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +.   .....+++++ +.+|++|+|...|
T Consensus       123 ~~---~~~~~~~~~~~~~lN~~gv~~~~~  148 (461)
T PRK10746        123 AQ---WIPALIAVALVALANLAAVRLYGE  148 (461)
T ss_pred             ch---HHHHHHHHHHHHHHHHHhHHHHHH
Confidence            22   2344445566 8999999998764

>PRK10580 proY putative proline-specific permease; Provisional

Probab=99.56  E-value=3.7e-14  Score=110.00  Aligned_cols=101  Identities=16%  Similarity=0.232  Sum_probs=80.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP   85 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~   85 (114)
                      ..+++++++.++.++|++|+++++|++||.|.|.++.+||..||+.||.+++. +....+....+++.|... ++|+.  
T Consensus        46 l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~--  121 (457)
T PRK10580         46 LAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFE-ILIVAIADVTAFGIYMGV-WFPTV--  121 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hCCCC--
Confidence            46889999999999999999999999999999999999999999999998764 555566667788888854 45532  


Q ss_pred             ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          86 PDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +.+   ..+++++++ +.+|++|+|..+|
T Consensus       122 ~~~---~~~~~~~~l~~~ln~~gv~~~~~  147 (457)
T PRK10580        122 PHW---IWVLSVVLIICAVNLMSVKVFGE  147 (457)
T ss_pred             ChH---HHHHHHHHHHHHHHHccchhHHH
Confidence            222   234445556 8999999998764

>PRK10836 lysine transporter; Provisional

Probab=99.52  E-value=1.8e-13  Score=107.06  Aligned_cols=101  Identities=14%  Similarity=0.050  Sum_probs=76.3

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP   85 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~   85 (114)
                      ..+++++++++++++||+||++++|++||.|.|.++.+||..||+.||.+++ .+....+. ....+++..+.++|+  .
T Consensus        53 ~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g~~~gf~~Gw~~~~-~~~~~~a~-~~~a~~~~~~~~~~~--~  128 (489)
T PRK10836         53 LSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWY-NWAVTIAV-DLVAAQLVMSWWFPD--T  128 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcChHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHhhhcCCC--C
Confidence            4678999999999999999999999999999999999999999999999876 45555443 344444444445553  2


Q ss_pred             ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          86 PDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +.+   ..+.+++.+ +.+|++|+|...+
T Consensus       129 ~~~---~~~~~~~~~~~~lN~~gv~~~~~  154 (489)
T PRK10836        129 PGW---IWSALFLGVIFLLNYISVRGFGE  154 (489)
T ss_pred             chH---HHHHHHHHHHHHHHHHcchhhhh
Confidence            222   334455556 8999999987654

>TIGR00909 2A0306 amino acid transporter

Probab=99.51  E-value=1.2e-13  Score=105.89  Aligned_cols=105  Identities=22%  Similarity=0.244  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCC--CC
Q psy5072           7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPT--CD   84 (114)
Q Consensus         7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~--~~   84 (114)
                      .+.++++..++.+++++|+++++|++||.|.|+++.+||..||+.+|.+++ .++...+..+..+++|+...+ +.  .+
T Consensus        41 ~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~gw~~~~-~~~~~~a~~~~~~~~~~~~~~-~~~~~~  118 (429)
T TIGR00909        41 SFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELTAFIIGWSLWL-EYGVAVAAVAVGWGGYLQEFL-PGVGLD  118 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHcccc
Confidence            456789999999999999999999999999999999999999999999866 467888999999999986533 31  11


Q ss_pred             CChhH---------HHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          85 PPDES---------VRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        85 ~~~~~---------~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      .|.+.         ....+++++++ +.+|++|.|...|
T Consensus       119 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~  157 (429)
T TIGR00909       119 LPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGK  157 (429)
T ss_pred             CchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence            12111         11345556666 8999999998765

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=99.50  E-value=2.1e-13  Score=107.47  Aligned_cols=102  Identities=15%  Similarity=0.166  Sum_probs=71.4

Q ss_pred             HHHHHH-HHHHHHHHHHhccccc-cCchhHHhHHHHhchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhCCCC
Q psy5072           9 AHINTH-DKVGAYCYSELGCMIS-KSGADYAYIMTTFGPFLAFIRLWIECMIV---RPCSQAIVALTFSIYALKPFFPTC   83 (114)
Q Consensus         9 ~~~~l~-~~~~al~~aEL~s~~P-~~GG~y~~~~~~~g~~~gfl~gw~~~~~~---~~~~~a~~a~~~~~yl~~~~~p~~   83 (114)
                      ++++++ .++.+++++||++++| ++||.|.|+++.+||++||+.+|.+|+..   .+... ....+...|...  +|+.
T Consensus        40 i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~~~Gf~~~~~~W~~~~~~~~~~~-~~~~~~~~y~~~--~~~~  116 (507)
T TIGR00910        40 LLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGERFGFAAIFFGWFQIAIGFIPMI-YFILGALSYILK--FPAL  116 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc--Cchh
Confidence            344444 4679999999999997 99999999999999999999888776532   22211 122333455542  3444


Q ss_pred             CCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          84 DPPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        84 ~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +.+.+...++.++++++ +++|+.|.|..+|
T Consensus       117 ~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~  147 (507)
T TIGR00910       117 NEDPIIKFIAALIIFWALAFSQFGGTKRTAK  147 (507)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34455555566667777 8999999988764

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=99.49  E-value=3.2e-13  Score=103.71  Aligned_cols=104  Identities=21%  Similarity=0.229  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCC---CC
Q psy5072           8 PAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPT---CD   84 (114)
Q Consensus         8 ~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~---~~   84 (114)
                      .++++++..+.+++++|+++.+|++||.|.|+++.+||..+|..+|.+++ .+....++.+..+++|+.. ++|.   ..
T Consensus        51 ~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  128 (466)
T COG0531          51 WLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGWLYLL-AYVIALAAIAIGAASYLSY-LFPGPGLLS  128 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCcchhhc
Confidence            57888889999999999999999999999999999999999999999976 4678888889999988764 5553   22


Q ss_pred             CChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          85 PPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        85 ~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      .+.+....++.+.+++ +++|++|+|..+|
T Consensus       129 ~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~  158 (466)
T COG0531         129 IGPLLIILIALALIALLTLLNLRGIKASAK  158 (466)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            2226677888888888 9999999998764

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=99.48  E-value=4.9e-13  Score=104.07  Aligned_cols=101  Identities=8%  Similarity=-0.066  Sum_probs=77.7

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCc-hhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSG-ADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCD   84 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~G-G~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~   84 (114)
                      ..+++++++.++.++|++||++++|++| |.|.|+++.+||..||++||.+++. +....++...+.++|+.. ++|+. 
T Consensus        40 ~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~~gf~~gw~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~-  116 (478)
T TIGR00913        40 IGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPAFGFAVGWNYWLQ-WLIVLPLELVTASMTIQY-WTDKV-  116 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-cCCCC-
Confidence            3577899999999999999999999655 5667999999999999999999764 667778888888888853 44422 


Q ss_pred             CChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          85 PPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        85 ~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                       +.+   ....+++++ +++|++|+|...|
T Consensus       117 -~~~---~~~~~~~~~~~~in~~gv~~~~~  142 (478)
T TIGR00913       117 -NPA---VWIAIFYVFIVIINLFGVKGYGE  142 (478)
T ss_pred             -CHH---HHHHHHHHHHHHHHHhcchHHHH
Confidence             111   112234455 8999999998754

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=99.48  E-value=4.5e-13  Score=104.39  Aligned_cols=105  Identities=10%  Similarity=0.075  Sum_probs=69.5

Q ss_pred             HHHHHHHH-HHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhh--hCC
Q psy5072           8 PAHINTHD-KVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIV---RPCSQAIVALTFSIYALKP--FFP   81 (114)
Q Consensus         8 ~~~~~l~~-~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~---~~~~~a~~a~~~~~yl~~~--~~p   81 (114)
                      .++++++. +..+++++||++++|++||.|.|+++.+||.+||+.+|.+|+..   .+...+..+..+ .|....  ..|
T Consensus        36 ~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~  114 (474)
T TIGR03813        36 YLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGFLAIFMLWAQVTIWFPTVLTFGAVSL-AFIGPEATVDE  114 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCccccCc
Confidence            45666655 47999999999999999999999999999999999999887642   222222211121 122110  112


Q ss_pred             CCCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          82 TCDPPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        82 ~~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      ....+.+....+.++++++ +++|++|+|..+|
T Consensus       115 ~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~  147 (474)
T TIGR03813       115 SLAGNKLYVLVSVLFVYWLATFIALRGVAAFTK  147 (474)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence            2222334444556666667 8999999987654

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.42  E-value=3.1e-12  Score=99.69  Aligned_cols=100  Identities=11%  Similarity=0.090  Sum_probs=80.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072           7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP   86 (114)
Q Consensus         7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~   86 (114)
                      .+.+++++.++++++++|++++.|..|+.|.|.++.+||..||+.||.+++. +....++.+.+++.|+.. ++|+.  +
T Consensus        58 ~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~~~gf~~gW~~~~~-~~~~~~a~~~a~~~~~~~-~~p~~--~  133 (469)
T PRK11049         58 VYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYFTGWTYWFC-WVVTGIADVVAITAYAQF-WFPDL--S  133 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hcCCC--c
Confidence            5678899999999999999999999999999999999999999999999865 444555567778888864 55642  2


Q ss_pred             hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          87 DESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      .   ...+.+++++ +.+|++|+|..+|
T Consensus       134 ~---~~~~~~~~~~~~~iN~~g~~~~~~  158 (469)
T PRK11049        134 D---WVASLAVVLLLLSLNLATVKMFGE  158 (469)
T ss_pred             H---HHHHHHHHHHHHHHHHHhHHHHHH
Confidence            2   2344555666 8999999998764

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=99.40  E-value=5.1e-12  Score=99.13  Aligned_cols=104  Identities=17%  Similarity=0.168  Sum_probs=64.5

Q ss_pred             HHHHHHH-HHHHHHHHHHhcccccc-CchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHH----HHHH-----HHhh
Q psy5072           8 PAHINTH-DKVGAYCYSELGCMISK-SGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVA----LTFS-----IYAL   76 (114)
Q Consensus         8 ~~~~~l~-~~~~al~~aEL~s~~P~-~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a----~~~~-----~yl~   76 (114)
                      +.+++++ .++.+++++||++++|+ +||.|.|+++.+||++||+.+|..+. .+....+..+    ....     .|..
T Consensus        43 ~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~~~gf~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (496)
T PRK15238         43 YILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPKFAFIGTFMWFA-SYIIWMVSTASKIWIPFSTFIFGKDTT  121 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence            4556655 46899999999999997 89999999999999999999987543 2222221111    1111     1111


Q ss_pred             hhh-CCCCCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          77 KPF-FPTCDPPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        77 ~~~-~p~~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +.+ .++.. +......+++..+++ +.+|.+|+|..+|
T Consensus       122 ~~~~~~~~~-~~~~~~~~a~~~~~~~t~vn~~g~~~~~~  159 (496)
T PRK15238        122 QTWHFLGLN-STQVVGILAVIWMILVTFVASKGINKIAK  159 (496)
T ss_pred             hhhhhhccc-chHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            100 00001 111223445555556 8999999998765

>PHA02764 hypothetical protein; Provisional

Probab=99.30  E-value=2.5e-12  Score=95.78  Aligned_cols=60  Identities=23%  Similarity=0.129  Sum_probs=53.2

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAI   66 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~   66 (114)
                      .+.+++++++++.++||+|+++++|++||.|.|.+|++||..|++.||..|.. .+.+.++
T Consensus        50 LAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISRAFGP~~GFLvG~a~WLt-l~~G~Pa  109 (399)
T PHA02764         50 FAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTAFSSKFYTIFGISLWLT-YVLSQPI  109 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHhhCccHHHHHHHHHHHH-HHhhcch
Confidence            57889999999999999999999999999999999999999999999987653 4455443

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.20  E-value=2.2e-10  Score=86.89  Aligned_cols=105  Identities=6%  Similarity=-0.223  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072           7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP   86 (114)
Q Consensus         7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~   86 (114)
                      ...++++.+...+++++|+++++|++||.|.|.++.+||..+++.+|..++..+ ...+++....++++.. +++....+
T Consensus        33 ~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~-~~~~ay~~~~~~~l~~-~~~~~~~~  110 (381)
T TIGR00837        33 LLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLLFVLY-ILTYAYISGGGSILSR-LIGEYFGF  110 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHH-HHHHHHHHccHHHHHH-HHHHhcCC
Confidence            356788999999999999999999999999999999999999999998876544 3444555666677655 33321111


Q ss_pred             hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          87 DESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      ....+...++..++ +.+|..|.|...|
T Consensus       111 ~~~~~~~~~~~~~v~~~l~~~G~~~~~~  138 (381)
T TIGR00837       111 PWSARAIVLIFTVLFGSFVWLSTSAVDR  138 (381)
T ss_pred             CccHHHHHHHHHHHHHHHHHhchhHHHH
Confidence            12234455555556 8999999987654

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.17  E-value=2.7e-11  Score=94.46  Aligned_cols=106  Identities=17%  Similarity=0.106  Sum_probs=80.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--CCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPF--FPTC   83 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~--~p~~   83 (114)
                      ..+++++++.++.+.+++|+++.+|++||.|.|+++..||..||..||.+++ .+....+....+.+.++.. +  +++.
T Consensus        33 la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~  110 (478)
T PF00324_consen   33 LAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWL-SYIAAIAAEATAAGSFLQF-WGYFPGL  110 (478)
T ss_pred             hHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHH-HHHHHHHhhhhhhhhhhcc-ccccccc
Confidence            4688999999999999999999999999999999999999999999999866 4667777777666655543 3  3332


Q ss_pred             CCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          84 DPPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        84 ~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      ..+......++.+.+++ +.+|++|+|..+|
T Consensus       111 ~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~  141 (478)
T PF00324_consen  111 PSTWVWGILIAIIFILLITLLNLFGVRVSGK  141 (478)
T ss_pred             cccccccchhhhhhhhhhhhhhhhhhhccch
Confidence            10111111345556666 8999999998765

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>KOG1286|consensus

Probab=99.09  E-value=5.2e-10  Score=89.22  Aligned_cols=72  Identities=22%  Similarity=0.198  Sum_probs=66.8

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccC-chhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKS-GADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKP   78 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~-GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~   78 (114)
                      +.++++|+.+++.++||+|++.++|++ |+.|.|.++..||.+||..||.+++ .+....|+++.+.+.|+...
T Consensus        68 isf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~e~~aF~~gWny~l-~y~i~~a~e~~a~s~~~~~w  140 (554)
T KOG1286|consen   68 ISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVGESLAFAIGWNYLL-EYVIGLAAEARAWSSYLDYW  140 (554)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeCcHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHH
Confidence            578999999999999999999999995 9999999999999999999999876 57899999999999999763

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.96  E-value=1.6e-08  Score=78.53  Aligned_cols=100  Identities=15%  Similarity=0.147  Sum_probs=85.7

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP   85 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~   85 (114)
                      ...+++|++..++.-+..|+.-.=|++|+--.|+++.+||..||++||.+|+. +....-+...+.+.|+.. ++|+.  
T Consensus        50 LaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~-wv~v~~ae~tAi~~y~~~-WfP~v--  125 (462)
T COG1113          50 LAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFF-WVLVGIAELTAIGIYLQF-WFPDV--  125 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hcCCC--
Confidence            35688999999999999999999999999999999999999999999999875 677777889999999964 78864  


Q ss_pred             ChhHHHHHHHHHHHH-HHHHHHhhhhhh
Q psy5072          86 PDESVRLLAVCCIYS-CYRYCSSQTLLI  112 (114)
Q Consensus        86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~  112 (114)
                      |.   .+.+.+.+++ +.+|..++|+..
T Consensus       126 P~---Wv~al~~~~l~~~~NL~sVk~FG  150 (462)
T COG1113         126 PQ---WVFALAAVVLLLAVNLISVKVFG  150 (462)
T ss_pred             cH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            43   3556666666 899999999864

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=98.90  E-value=3.8e-08  Score=74.16  Aligned_cols=104  Identities=9%  Similarity=-0.001  Sum_probs=79.9

Q ss_pred             cccchHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCC
Q psy5072           3 HVHVCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPT   82 (114)
Q Consensus         3 ~~~~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~   82 (114)
                      +.-...+++++..+..+++++|+++++|+. +.+.|.++.+||..|++.+|.+.. ......+.....+++++...+.|+
T Consensus        35 ~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~  112 (359)
T TIGR00912        35 DGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILGRLLSILFIL-YFFLIAAYLIRIFADFIKTYLLPR  112 (359)
T ss_pred             CeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            344578899999999999999999999987 699999999999999999998754 455556666677777775433443


Q ss_pred             CCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          83 CDPPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        83 ~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                        .|   ...+....+++ +.+|..|.|..+|
T Consensus       113 --tp---~~~~~l~~l~~~~~~~~~Gi~~i~r  139 (359)
T TIGR00912       113 --TP---IIVIIILIIIVSIYIVRKGIEVLLR  139 (359)
T ss_pred             --CC---HHHHHHHHHHHHHHHHHccHHHHHH
Confidence              22   23445555556 7889999998876

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=98.87  E-value=3.5e-08  Score=78.05  Aligned_cols=101  Identities=13%  Similarity=0.055  Sum_probs=80.6

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP   85 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~   85 (114)
                      ..+++.|++..++..|..||++.+|.+|+-..|..|-.+|-+||..||.+|+. +....++.-.+.+..+. .++|+.. 
T Consensus        82 i~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvdpa~GFa~gWnYw~~-w~v~~~~El~aa~~vi~-yW~p~~v-  158 (541)
T COG0833          82 IAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDPAFGFALGWNYWLN-WAVTLPLELTAASLVIQ-YWFPDTV-  158 (541)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcCchHHHHHHHHHHHH-HHHHhhHHHHHHHHhhh-hhcCCCC-
Confidence            35788999999999999999999999999999999999999999999999875 77888888777776664 4666431 


Q ss_pred             ChhHHHHHHHHHHHH-HHHHHHhhhhhh
Q psy5072          86 PDESVRLLAVCCIYS-CYRYCSSQTLLI  112 (114)
Q Consensus        86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~  112 (114)
                      |   ......+..++ +.+|.+|+|...
T Consensus       159 ~---~~~w~~iF~~~i~~iN~~~Vk~fG  183 (541)
T COG0833         159 P---PWIWIAIFLVLIFLLNLFGVKGFG  183 (541)
T ss_pred             C---hHHHHHHHHHHHHHHHHhcccccc
Confidence            2   22333344445 899999999765

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=98.07  E-value=6.4e-05  Score=57.84  Aligned_cols=97  Identities=9%  Similarity=0.088  Sum_probs=66.8

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCS----QAIVALTFSIYALKPFFP   81 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~----~a~~a~~~~~yl~~~~~p   81 (114)
                      .+|.+.++...+.+++      +.|++||.|.+.++.+||+.|++.+|..++...|..    .++.++-++  + ++++|
T Consensus        33 lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~l~iGP~~aiPRtaa~s~e~~--i-~p~~~  103 (378)
T TIGR00796        33 LGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILYLTIGPLFAIPRTATVSFEMG--I-APLLH  103 (378)
T ss_pred             HHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH--H-HhccC
Confidence            3566777777777776      899999999999999999999999999877666766    666666655  3 45555


Q ss_pred             CCCCChhHHHHHHHHHHHH-HHHHHHhhhhhh
Q psy5072          82 TCDPPDESVRLLAVCCIYS-CYRYCSSQTLLI  112 (114)
Q Consensus        82 ~~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~  112 (114)
                      +.. +........++...+ .++|+.+.|+.-
T Consensus       104 ~~~-~~~~l~i~siiff~i~~~l~~~~~k~~~  134 (378)
T TIGR00796       104 SPT-SLLALFIFSLIFFAVVLLLSLNPSKLID  134 (378)
T ss_pred             ccc-chHHHHHHHHHHHHHHHHHHcCcccHHH
Confidence            321 112222333333334 468998888653

transmembrane helical spanners.

>TIGR00814 stp serine transporter

Probab=97.78  E-value=0.0007  Score=52.42  Aligned_cols=99  Identities=11%  Similarity=0.046  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHH----HHHhcccccc-CchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhC
Q psy5072          10 HINTHDKVGAYC----YSELGCMISK-SGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIY----ALKPFF   80 (114)
Q Consensus        10 ~~~l~~~~~al~----~aEL~s~~P~-~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~y----l~~~~~   80 (114)
                      ++++++....+.    +.|.-...|. +.+.+.++++.+||..|.+.++.+++..+ ....+++....+.    +...+.
T Consensus        38 i~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~-~i~~aY~~~~~~~~~~fl~~~~~  116 (397)
T TIGR00814        38 LMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAIY-PILLIYSVAITNDSASFLVNQLG  116 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence            344444444444    4444333344 78899999999999999999999876543 3434444444444    433221


Q ss_pred             CCCCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          81 PTCDPPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        81 p~~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +  +.|+  .......++++ ..++..|.|.+.|
T Consensus       117 ~--~~p~--~~i~~lilv~il~~iv~~G~~~i~r  146 (397)
T TIGR00814       117 T--APPL--RGLLSLALILILVAIMSFGEKLLFK  146 (397)
T ss_pred             C--CCcH--HHHHHHHHHHHHHHHHHhcHHHHHH
Confidence            2  1222  22455555566 7999999998876

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.11  E-value=0.016  Score=43.12  Aligned_cols=101  Identities=13%  Similarity=0.052  Sum_probs=74.3

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP   85 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~   85 (114)
                      ...+++++..+..++.+..+.+++|+.. ...+.++.+||..|.+.+....+ ......+.....+++.+...+.|+  .
T Consensus        36 i~~ll~~~~~l~~~~l~~~l~~~~p~~~-l~~~~~~~~Gk~lg~ii~~~~~l-~~l~~~~~~lr~~~~~i~~~~lp~--T  111 (320)
T PF03845_consen   36 ISVLLGGLIGLLLALLIYYLLKRFPGKT-LVEISEKLFGKWLGKIINLLYIL-YFLLISALVLREFSEFIKTYLLPE--T  111 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCc--C
Confidence            5678899999999999999999999865 67999999999999988876543 345566666777777766545553  2


Q ss_pred             ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          86 PDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      |   ...+....+.. ......|.+.++|
T Consensus       112 P---~~~i~~~~ll~~~y~a~~G~e~i~R  137 (320)
T PF03845_consen  112 P---IWVIILLFLLVAAYAARKGIEVIAR  137 (320)
T ss_pred             C---HHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            2   23333444444 6777888888776

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=96.66  E-value=0.04  Score=42.66  Aligned_cols=69  Identities=3%  Similarity=-0.224  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5072           8 PAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALK   77 (114)
Q Consensus         8 ~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~   77 (114)
                      ..++..++...++.++|.....|+.-+.-.-.++.+||..+++.+..+.+..+... .++....++-+.+
T Consensus        40 l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll-~AYisg~g~~~~~  108 (394)
T PF03222_consen   40 LLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYALL-VAYISGGGSILSS  108 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHHHHccHHHHHH
Confidence            45667778889999999999999988888999999999999999888766554433 3445555555544

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>KOG2083|consensus

Probab=95.69  E-value=0.016  Score=47.08  Aligned_cols=101  Identities=13%  Similarity=0.047  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHhccccc-cCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCCh
Q psy5072           9 AHINTHDKVGAYCYSELGCMIS-KSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPPD   87 (114)
Q Consensus         9 ~~~~l~~~~~al~~aEL~s~~P-~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~~   87 (114)
                      .++..++...+++..-.+++-. ++||.|.-+++..|+..|--.|-++.+ +...+.|.+..+|++-+..++ .++  +.
T Consensus        70 ~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~slg~efggsigiIy~f-~~aVa~am~~vgfaEsv~~l~-~~~--s~  145 (643)
T KOG2083|consen   70 GLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSLGPEFGGSIGIIYAF-ANAVATAMYVVGFAESVAHLF-ETE--SK  145 (643)
T ss_pred             HHHHHHHHHHHHhHheeeecceeccCcEEEEEEecccccccchhHHHHHH-HHHHHHHHhhhhHHHHHHHHH-Hhc--cH
Confidence            3455667778888888888765 689999999999998888888877655 466778888899999887644 332  34


Q ss_pred             hHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          88 ESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        88 ~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +.++.++.+..++ ..+|..|+||-+|
T Consensus       146 ~~i~gi~~vt~~ill~i~~ag~~w~~k  172 (643)
T KOG2083|consen  146 EMIDGIGSVTVLILLAINVAGVEWEAK  172 (643)
T ss_pred             HHhcchhHHHHHHHHHhhhccchhHHH
Confidence            4566677777777 8999999998776

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=94.91  E-value=0.47  Score=37.03  Aligned_cols=66  Identities=6%  Similarity=-0.108  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5072           9 AHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYA   75 (114)
Q Consensus         9 ~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl   75 (114)
                      .++..++...++.++|.....|+.-+.-.-+++.+||..+++....+.+..++. ..++....++-+
T Consensus        41 i~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~l-l~AYisg~g~il  106 (403)
T PRK15132         41 IGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYAL-TAAYISGAGELL  106 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHH-HHHHHhCcHHHH
Confidence            455556778888899998888888888889999999999999888877655543 334444533333

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=94.33  E-value=0.92  Score=35.39  Aligned_cols=70  Identities=3%  Similarity=-0.218  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccCc-hhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5072           7 CPAHINTHDKVGAYCYSELGCMISKSG-ADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALK   77 (114)
Q Consensus         7 ~~~~~~l~~~~~al~~aEL~s~~P~~G-G~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~   77 (114)
                      +.++++.++....+.+.|.....|+.. +...-+++-+||.++++.+-.+.+..++ ...++....++-+.+
T Consensus        45 ~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~-~~~aY~~~~g~~l~~  115 (415)
T COG0814          45 LLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGLSYFFALYG-LLVAYIVGIGNLLAS  115 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHHHHHHHHHHH-HHHHHHhcchhHHHH
Confidence            457788999999999999999999995 8899999999999999999877654443 334455555555544

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=94.30  E-value=1.8  Score=34.36  Aligned_cols=99  Identities=10%  Similarity=0.001  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHhcccc-ccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhC--CCC-C
Q psy5072           9 AHINTHDKVGAYCYSELGCMI-SKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFF--PTC-D   84 (114)
Q Consensus         9 ~~~~l~~~~~al~~aEL~s~~-P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~--p~~-~   84 (114)
                      .++..++...++.++|..... |+..+.-.-+++.+|+.++.+.+..+++..++.. .++.....+.+.+.+.  -+. +
T Consensus        57 ll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~ll-~aY~~~itn~l~sfl~~ql~~~~  135 (443)
T PRK13629         57 VLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLL-WIYGVTITNTFMTFWENQLGFAP  135 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCcCC
Confidence            455666677788999998888 5555566777889999999999988877655543 3344444444433111  011 1


Q ss_pred             CChhHHHHHHHHHHHH-HHHHHHhhhhh
Q psy5072          85 PPDESVRLLAVCCIYS-CYRYCSSQTLL  111 (114)
Q Consensus        85 ~~~~~~~~ia~~~i~~-~~iN~~g~k~~  111 (114)
                      ++   ..+.+.+++.+ ..+-..|.|.+
T Consensus       136 ~~---r~l~slifv~~l~~iv~~G~~~v  160 (443)
T PRK13629        136 LN---RGFVALFLLLLMAFVIWFGKDLM  160 (443)
T ss_pred             cc---HHHHHHHHHHHHHHHHHhhHHHH
Confidence            22   23444444444 66666776654

>PRK10483 tryptophan permease; Provisional

Probab=92.23  E-value=3.6  Score=32.33  Aligned_cols=70  Identities=3%  Similarity=-0.240  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5072           7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALK   77 (114)
Q Consensus         7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~   77 (114)
                      ...+..+++...++...|....+|+.-+.-.-.++..||.+..+.+..+.+..+.. ..++-...++-+.+
T Consensus        47 ~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~L-l~AYisg~g~il~~  116 (414)
T PRK10483         47 ALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYIL-TYAYISASGSILHH  116 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHH-HHHHHhCcHHHHHH
Confidence            34566777889999999999999998888899999999987665555444443433 33333344444444

>KOG2082|consensus

Probab=91.69  E-value=0.23  Score=41.95  Aligned_cols=103  Identities=14%  Similarity=0.071  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcccc-ccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCC---
Q psy5072           8 PAHINTHDKVGAYCYSELGCMI-SKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTC---   83 (114)
Q Consensus         8 ~~~~~l~~~~~al~~aEL~s~~-P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~---   83 (114)
                      -++++.+.++.+.+++-+++-= -.+||.|..++|..||-.|--.|-...+ +.....|.+-....+-++..++|..   
T Consensus       153 v~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGlcFYL-gtT~AaaMYIlGaVEi~L~Yi~P~aaIf  231 (1075)
T KOG2082|consen  153 VFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYL-GTTVAAAMYILGAVEIFLTYIFPAAAIF  231 (1075)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeeehhhh-hhHHHHHHHHHhHHHHHHHHHccHhhhc
Confidence            3566777778888888877643 4589999999999999988877755333 3333444444444444443334421   


Q ss_pred             ---C------CChhHHHHHHHHHHHH-HHHHHHhhhhh
Q psy5072          84 ---D------PPDESVRLLAVCCIYS-CYRYCSSQTLL  111 (114)
Q Consensus        84 ---~------~~~~~~~~ia~~~i~~-~~iN~~g~k~~  111 (114)
                         +      +.....++-+.+++++ +++-+.|+|..
T Consensus       232 ~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~V  269 (1075)
T KOG2082|consen  232 GAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFV  269 (1075)
T ss_pred             CccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHH
Confidence               0      1112244555555666 67777777754

>PRK09664 tryptophan permease TnaB; Provisional

Probab=91.11  E-value=6.2  Score=31.07  Aligned_cols=69  Identities=4%  Similarity=-0.208  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5072           8 PAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALK   77 (114)
Q Consensus         8 ~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~   77 (114)
                      ..+..+++...++.+.|....+|+.-+.-.-.++..||.+-.+.+..+.+..+.. ..++-...++-+.+
T Consensus        46 l~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y~L-l~AYisggG~il~~  114 (415)
T PRK09664         46 LIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYIL-TYAYISANGAIISE  114 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHH-HHHHHhccHHHHHH
Confidence            3456677788999999999999998888999999999986655555443433433 33333344444444

>TIGR00835 agcS amino acid carrier protein

Probab=88.24  E-value=11  Score=29.91  Aligned_cols=96  Identities=11%  Similarity=0.076  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHhccccc---c----CchhHHhHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCC
Q psy5072          10 HINTHDKVGAYCYSELGCMIS---K----SGADYAYIMTTFG-PFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFP   81 (114)
Q Consensus        10 ~~~l~~~~~al~~aEL~s~~P---~----~GG~y~~~~~~~g-~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p   81 (114)
                      +++++.+...++-.-|+-.+.   +    .||+-.|.++..+ |+.|.+.... .+..........+...++-+.+.+  
T Consensus        86 I~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~--  162 (425)
T TIGR00835        86 VTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF--  162 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc--
Confidence            344555554444444555554   2    2455588888765 6666665544 222223345556666666554322  


Q ss_pred             CCCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          82 TCDPPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        82 ~~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                        +.|+   ...++.+.++ ..+-.-|.|.++|
T Consensus       163 --~~~~---~v~~i~l~~l~~~vi~GGik~Ia~  190 (425)
T TIGR00835       163 --NVPK---LVTGIVLTVLTALIIFGGLKRIAK  190 (425)
T ss_pred             --CCcH---HHHHHHHHHHHHHHHhcCchHHHH
Confidence              2232   2334444444 3343337776654

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups

Probab=88.02  E-value=9.4  Score=30.11  Aligned_cols=38  Identities=16%  Similarity=0.115  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHhcccccc-------CchhHHhHHHHhchHH
Q psy5072          10 HINTHDKVGAYCYSELGCMISK-------SGADYAYIMTTFGPFL   47 (114)
Q Consensus        10 ~~~l~~~~~al~~aEL~s~~P~-------~GG~y~~~~~~~g~~~   47 (114)
                      +.+++.+...++=.-|+-.|.+       .||+..|.++.+|.++
T Consensus        58 i~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~  102 (416)
T PF01235_consen   58 ISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKW  102 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccch
Confidence            4455555555555556666542       4899999999988764

One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]

Probab=82.36  E-value=24  Score=28.26  Aligned_cols=97  Identities=9%  Similarity=0.032  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHhcccccc-------CchhHHhHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCC
Q psy5072          10 HINTHDKVGAYCYSELGCMISK-------SGADYAYIMTTFGPFL-AFIRLWIECMIVRPCSQAIVALTFSIYALKPFFP   81 (114)
Q Consensus        10 ~~~l~~~~~al~~aEL~s~~P~-------~GG~y~~~~~~~g~~~-gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p   81 (114)
                      +.+++.+...++=+-|+..|.+       .||+-+|.++..|.++ +-+.............+...+.+.++-+...+  
T Consensus       102 i~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af--  179 (452)
T COG1115         102 IVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAF--  179 (452)
T ss_pred             HHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhc--
Confidence            3455555555555556766651       4799999999988553 44444222121122355666666666665432  


Q ss_pred             CCCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          82 TCDPPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        82 ~~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                        +.|   ....++++.++ .++=.-|+|.++|
T Consensus       180 --~~~---~~~~gi~la~l~~~VI~GGi~rIa~  207 (452)
T COG1115         180 --GIP---PLVTGIVLALLVALVIFGGIKRIAK  207 (452)
T ss_pred             --CCc---HHHHHHHHHHHHHHHHHcchHHHHH
Confidence              122   23445555555 5666677776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	1e-08
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	1e-07
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	9e-05

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 19  AYCYSELGCMISKSGADYAYIMTTFGP-FLAFI---RLWIECMIVRPCSQAIVALTFSIY 74
           AY Y++LG  I  +    A+I    G   +       LW+  +I    S A+ A  F+ Y
Sbjct: 56  AYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVI----SIALFAKGFAGY 111

Query: 75  ALKPF 79
            L   
Sbjct: 112 FLPLI 116

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 19  AYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKP 78
           +  Y+++  +    G  YAY    FGPFL +    +  +     + A+V +      L  
Sbjct: 57  SMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVG--YLSY 114

Query: 79  FFP 81
           FFP
Sbjct: 115 FFP 117

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511

 Score = 39.1 bits (91), Expect = 9e-05
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 19  AYCYSELGCMIS-KSGADYAYIMTTFGPFLAFI---RLWIECMIVRPCSQAIVALTFS 72
             C +E+  +   + G  +A++  T GP   F      +++  I        V    S
Sbjct: 58  GLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALS 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.62
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	99.56
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.54

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.62  E-value=3.7e-15  Score=112.65  Aligned_cols=105  Identities=14%  Similarity=0.163  Sum_probs=89.0

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP   85 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~   85 (114)
                      ...++++++.++.+++|+|+++++|++||.|.|.++.+||..||+.+|.+++. +....++.+..+++|+.. ++|+.. 
T Consensus        44 ~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~-  120 (445)
T 3l1l_A           44 YGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLA-CWIGNIAMVVIGVGYLSY-FFPILK-  120 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-TCGGGG-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HCcccc-
Confidence            35678999999999999999999999999999999999999999999998764 566777888999999875 556432 


Q ss_pred             ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          86 PDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +++...+++++++++ +.+|++|+|..+|
T Consensus       121 ~~~~~~~~~~~~~~~~~~in~~g~~~~~~  149 (445)
T 3l1l_A          121 DPWVLTITCVVVLWIFVLLNIVGPKMITR  149 (445)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            346677788888888 9999999998765

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=99.56  E-value=1.8e-14  Score=110.69  Aligned_cols=102  Identities=10%  Similarity=0.070  Sum_probs=78.7

Q ss_pred             HHHHHH-HHHHHHHHHhcc--ccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-CCCCCC
Q psy5072          10 HINTHD-KVGAYCYSELGC--MISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPF-FPTCDP   85 (114)
Q Consensus        10 ~~~l~~-~~~al~~aEL~s--~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~-~p~~~~   85 (114)
                      +++++. ++.+++|+|+++  ++| +||.|.|+++.+||.+||+.+|.+++. +....++.....++++...+ .|+.++
T Consensus        48 i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~~~~g~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~  125 (511)
T 4djk_A           48 LGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVSNTLGPRWGFAAISFGYLQ-IAIGFIPMLYFVLGALSYILKWPALNE  125 (511)
T ss_dssp             HHHHHTHHHHHHHHHHHHTTSCC----CHHHHHHHHHCHHHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHTTTTCGGGTS
T ss_pred             HHHHHHHHHHHHHHHHHcccccCC-CCChhhhHHhhcCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            344444 458999999999  999 999999999999999999999998764 55666677777777775432 455555


Q ss_pred             ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          86 PDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      +++...+++++++++ +.+|++|+|...|
T Consensus       126 ~~~~~~~~~~~~~~~~~~in~~g~~~~~~  154 (511)
T 4djk_A          126 DPITKTIAALIILWALALTQFGGTKYTAR  154 (511)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHTCSSSHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence            667788888888888 9999999998764

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.54  E-value=1.3e-13  Score=104.17  Aligned_cols=105  Identities=15%  Similarity=0.065  Sum_probs=86.3

Q ss_pred             chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCC
Q psy5072           6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFL-AFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCD   84 (114)
Q Consensus         6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~-gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~   84 (114)
                      ..+++++++.++.+++|+|+++++|++||.|.|+++.+||.+ +...+|.+++ .+....+..+.++++|+.. ++|.. 
T Consensus        43 ~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~~~~~g~~~~~~~~-~~~~~~a~~~~~~~~~~~~-~~~~~-  119 (444)
T 3gia_A           43 ETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWM-SYVISIALFAKGFAGYFLP-LINAP-  119 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCSSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhCCC-
Confidence            357889999999999999999999999999999999999963 4445788765 4677888999999999976 45542 


Q ss_pred             CChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072          85 PPDESVRLLAVCCIYS-CYRYCSSQTLLID  113 (114)
Q Consensus        85 ~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~  113 (114)
                      ++++....++.+++++ +.+|++|+|..+|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~in~~g~~~~~~  149 (444)
T 3gia_A          120 INTFNIAITEIGIVAFFTALNFFGSKAVGR  149 (444)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3456667788888888 9999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00