Psyllid ID: psy5116

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
MYGRIKRRGRPPKTPNTERPKFQVHLLKKPQYLQNLEARGLNSPITSRTSSPQGSETSRRSTAKKGTKRKSNPPTRGGRGGNQKRKQTLETDYHYGSDFEDSTDHDDDLGLSESETEPEKDDPLDEMSDSDLSLSSFSTTSGTNKKFSYISRMSPEPLWLQTERQIQPLELPRSSDDLLIPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVLNFEEQSNLLVEIHVSLLKTIFREEDTQQTHFGPLDQKDSANSVLYFIDAMTWPEALRSYIESDKTFDEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILITSPVREDLIHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDVEKSGLLCRQEHLGFDRAGRKYWFLSRRIFM
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHcccHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEc
ccccccccccccccccccccccEEEEcccccHHccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHEEEEHHccccHHHHHHHHHHccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccccccEEEccccccEEEHHHcccccHHccccccEccHEEcccccccccccccccccccccccccccccccccEEEEEEEEEEc
mygrikrrgrppktpnterpkfqvhllkkpQYLQNlearglnspitsrtsspqgsetsrrstakkgtkrksnpptrggrggnqkrkQTLEtdyhygsdfedstdhdddlglsesetepekddpldemsdsdlslssfsttsgtnkkfsyisrmspeplwlqterqiqplelprssddllipreyVMQTLSIYEVLRHFKSLirlspfrfeDFCAVLNFEEQSNLLVEIHVSLLKTIFreedtqqthfgpldqkdsaNSVLYFIDAMTWPEALRSYIESDKTFDEEVLNILntceypftNIEKRLRVLQFLTdqilitspvredliheggfqyddhcrvchrvgellccetcpavfhlecvdpplrdvpqedwqcnlckahkvtgvtdclpdveksgllcrqehlgfdragrKYWFLSRRIFM
mygrikrrgrppktpnterpkfqvhLLKKPQYLQNLEarglnspitsrtsspqgsetsrrstakkgtkrksnpptrggrggnqkrkqTLETDYHYGSDFEDSTDHDDDLGLSEsetepekddpldemsdsdlslssfsttsgtnkkfsyisrMSPEPLWLQTERQIQPlelprssddlliPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVLNFEEQSNLLVEIHVSLLKTIFREEDTQqthfgpldqkdsaNSVLYFIDAMTWPEALRSYIESDKTFDEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILITSPVREDLIHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDVEKSGLLcrqehlgfdragrkywflsrrifm
MYGRIKRRGRPPKTPNTERPKFQVHLLKKPQYLQNLEARGLNSPITSRTSSPQGSETSRRSTAKKGTKRKSNPPTrggrggNQKRKQTLETDYHYGSdfedstdhdddLGLSESETEPEKddpldemsdsdlslssfsttsgtNKKFSYISRMSPEPLWLQTERQIQPLELPRSSDDLLIPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVLNFEEQSNLLVEIHVSLLKTIFREEDTQQTHFGPLDQKDSANSVLYFIDAMTWPEALRSYIESDKTFDEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILITSPVREDLIHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDVEKSGLLCRQEHLGFDRAGRKYWFLSRRIFM
**************************************************************************************************************************************************************WL****************DLLIPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVLNFEEQSNLLVEIHVSLLKTIFREEDT**THFG******SANSVLYFIDAMTWPEALRSYIESDKTFDEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILITSPVREDLIHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDVEKSGLLCRQEHLGFDRAGRKYWFLSRRI**
*******************************************************************************************************************************************************************RQ****ELPRSSDDLLIPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVLNFEEQSNLLVEIHVSLLKTIFRE*D************DSANSVLYFIDAMTWPEALRSYIESDK******************************************DLIHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCN*******************************DRAGRKYWFLSRRIFM
MYGRIKRRGRPPKTPNTERPKFQVHLLKKPQYLQNLEARGLNS******************************************KQTLETDYHYGSDFE*********************************LSSFSTTSGTNKKFSYISRMSPEPLWLQTERQIQPLELPRSSDDLLIPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVLNFEEQSNLLVEIHVSLLKTIFREEDTQQTHFGPLDQKDSANSVLYFIDAMTWPEALRSYIESDKTFDEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILITSPVREDLIHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDVEKSGLLCRQEHLGFDRAGRKYWFLSRRIFM
******************RPKFQVHLLKKPQYLQ****************************************************QTLET*****************************************************************PLWLQTERQIQPLELPRSSDDLLIPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVLNFEEQSNLLVEIHVSLLKTIFREEDTQQTHFGPLDQKDSANSVLYFIDAMTWPEALRSYIESDKTFDEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILITSPVREDLIHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLP***KSGLLCRQEHLGFDRAGRKYWFLSRRIFM
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYGRIKRRGRPPKTPNTERPKFQVHLLKKPQYLQNLEARGLNSPITSRTSSPQGSETSRRSTAKKGTKRKSNPPTRGGRGGNQKRKQTLETDYHYGSDFEDSTDHDDDLGLSESETEPEKDDPLDEMSDSDLSLSSFSTTSGTNKKFSYISRMSPEPLWLQTERQIQPLELPRSSDDLLIPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVLNFEEQSNLLVEIHVSLLKTIFREEDTQQTHFGPLDQKDSANSVLYFIDAMTWPEALRSYIESDKTFDEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILITSPVREDLIHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDVEKSGLLCRQEHLGFDRAGRKYWFLSRRIFM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query422 2.2.26 [Sep-21-2011]
Q9W0T1 2669 Nucleosome-remodeling fac no N/A 0.957 0.151 0.533 1e-126
Q12830 3046 Nucleosome-remodeling fac no N/A 0.554 0.076 0.471 2e-69
Q6BER5 2194 Nucleosome-remodeling fac yes N/A 0.658 0.126 0.345 1e-45
Q09698 607 Uncharacterized protein C yes N/A 0.130 0.090 0.456 5e-11
Q04779 684 Transcriptional regulator yes N/A 0.165 0.102 0.376 1e-10
Q14839 1912 Chromodomain-helicase-DNA no N/A 0.149 0.032 0.414 2e-10
Q6PDQ2 1915 Chromodomain-helicase-DNA no N/A 0.149 0.032 0.414 2e-10
O16102 892 Chromodomain-helicase-DNA no N/A 0.125 0.059 0.431 3e-10
Q9Z0E3 552 Autoimmune regulator OS=M no N/A 0.123 0.094 0.461 3e-10
O97159 1982 Chromodomain-helicase-DNA no N/A 0.125 0.026 0.452 3e-10
>sp|Q9W0T1|NU301_DROME Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster GN=E(bx) PE=1 SV=2 Back     alignment and function desciption
 Score =  453 bits (1165), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/446 (53%), Positives = 299/446 (67%), Gaps = 42/446 (9%)

Query: 1   MYGRIKR-RGRPPKTPNTERP--KFQVHLLKKPQYLQNLEARGLNSPITSRTSSPQGSET 57
           M GR  R RGRPPKTPN ER   +F   LLKKP+YL   +++  ++P  SR  SPQ  E 
Sbjct: 1   MSGRGSRKRGRPPKTPN-ERASGRFNYQLLKKPKYLSEGKSQP-STPSASRGISPQSDEG 58

Query: 58  SRRS-----------TAKKGTKRKS----NPPTRGGRGGNQKRKQTLETDYHYGSDF--- 99
           SR S            AK+G  RKS    N  +  GR G        E++YHYGSDF   
Sbjct: 59  SRSSHNNHTNRSRGSAAKRGRGRKSAVQPNTSSYSGRKG-------YESEYHYGSDFGDS 111

Query: 100 -EDSTDHDDDLGLSESETEPEKDDPLD--EMSDSDLSLSSFSTTSGTNKKFSYISRMSPE 156
            ED +D++DD+ L+     P  D+ L+    S+S+ S+ SF+     N         SPE
Sbjct: 112 EEDKSDNEDDMLLT-----PSDDESLEVANESESEFSVCSFNQ----NGVGRPPRPPSPE 162

Query: 157 PLWLQTERQIQPLELPRSSDDLLIPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVL 216
           P+WLQ  RQ   L+LP SS+DL I   +V++ LSIYEVLR F+ ++RLSPFRFED CA L
Sbjct: 163 PVWLQEGRQYAALDLPDSSEDLFIANTHVLRALSIYEVLRRFRHMVRLSPFRFEDLCAAL 222

Query: 217 NFEEQSNLLVEIHVSLLKTIFREEDTQQTHFGPLDQKDSANSVLYFIDAMTWPEALRSYI 276
             EEQS LL E+H+ LLK I REED Q THFGPLDQKD+ N  LY ID++TWPE LRSY+
Sbjct: 223 ACEEQSALLTEVHIMLLKAILREEDAQGTHFGPLDQKDTVNISLYLIDSITWPEVLRSYV 282

Query: 277 ESDKTFDEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILITSPVREDLIHEGGFQYDDHC 336
           ESDKTFD  V +IL+  EYP+T I+ RL VLQFL+DQ L ++ +R+ ++ EG   YDDHC
Sbjct: 283 ESDKTFDRNVFHILSHTEYPYTGIDNRLEVLQFLSDQFLTSNSIRDVMLQEGPIHYDDHC 342

Query: 337 RVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDVEKSG 396
           RVCHR+G+LLCCETCPAV+HLECVDPP+ DVP EDWQC LC++HKV+GV DC+   EK G
Sbjct: 343 RVCHRLGDLLCCETCPAVYHLECVDPPMNDVPTEDWQCGLCRSHKVSGVVDCVLPQEKQG 402

Query: 397 LLCRQEHLGFDRAGRKYWFLSRRIFM 422
           +L R + LG DR GRKYWF++RRIF+
Sbjct: 403 VLIRHDSLGVDRHGRKYWFIARRIFI 428
Histone-binding component of NURF (nucleosome remodeling factor), a complex which catalyzes ATP-dependent nucleosome sliding and facilitates transcription of chromatin. Specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes. Required for homeotic gene expression, proper larval blood cell development, normal male X chromosome morphology, ecdysteroid signaling and metamorphosis.
Drosophila melanogaster (taxid: 7227)
>sp|Q12830|BPTF_HUMAN Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF PE=1 SV=3 Back     alignment and function description
>sp|Q6BER5|NU301_CAEEL Nucleosome-remodeling factor subunit NURF301-like OS=Caenorhabditis elegans GN=nurf-1 PE=1 SV=2 Back     alignment and function description
>sp|Q09698|YA27_SCHPO Uncharacterized protein C2F7.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F7.07c PE=4 SV=1 Back     alignment and function description
>sp|Q04779|RCO1_YEAST Transcriptional regulatory protein RCO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCO1 PE=1 SV=1 Back     alignment and function description
>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2 Back     alignment and function description
>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1 Back     alignment and function description
>sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3 Back     alignment and function description
>sp|Q9Z0E3|AIRE_MOUSE Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1 Back     alignment and function description
>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
328788592 2735 PREDICTED: nucleosome-remodeling factor 0.983 0.151 0.620 1e-147
380014032 2734 PREDICTED: LOW QUALITY PROTEIN: nucleoso 0.983 0.151 0.622 1e-147
340712315 2733 PREDICTED: nucleosome-remodeling factor 0.988 0.152 0.603 1e-146
383857078 2734 PREDICTED: LOW QUALITY PROTEIN: nucleoso 0.976 0.150 0.611 1e-146
350417610 2733 PREDICTED: nucleosome-remodeling factor 0.988 0.152 0.603 1e-145
345482162 2739 PREDICTED: nucleosome-remodeling factor 0.992 0.152 0.608 1e-144
307206270 3705 Nucleosome-remodeling factor subunit NUR 0.971 0.110 0.579 1e-143
332027303 2702 Nucleosome-remodeling factor subunit [Ac 0.997 0.155 0.579 1e-141
242013553 2598 fetal alzheimer antigen, falz, putative 0.978 0.158 0.573 1e-141
357621017 2482 putative fetal alzheimer antigen, falz [ 0.981 0.166 0.574 1e-139
>gi|328788592|ref|XP_395718.4| PREDICTED: nucleosome-remodeling factor subunit NURF301-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 278/448 (62%), Positives = 330/448 (73%), Gaps = 33/448 (7%)

Query: 1   MYGR-IKRRGRPPKTPNTERPK-FQVHLLKKPQYLQNLEARGLNS----PITSRTSSPQG 54
           M GR  KRRGRPPK+   ERPK FQ HL+KKP+YLQN  +   NS    P  SR SSP  
Sbjct: 1   MTGRGSKRRGRPPKSVVMERPKKFQYHLMKKPKYLQNKGSETPNSQPSTPTPSRPSSPVE 60

Query: 55  SETSRRSTAKKGTKRKSNPPTRGG----RGGNQKRKQTLETDYH-----YGSDFEDSTDH 105
           SE SRRST  + ++   +  +R G     G  Q+R      DYH     YGSDF D +  
Sbjct: 61  SEESRRSTRIRKSRGPRDRHSRKGGHSSSGAYQRRGYNPNVDYHDSEYHYGSDFGDESSE 120

Query: 106 ---------DDDLGLSESETEPEKDDPLDEMSDSDLSLSSFSTTSGTNKK--FSYISRMS 154
                      D+  SES  EP+        SDSD SLSS+STTSGT +K   S     S
Sbjct: 121 KSEVEEDLLQSDVDSSESIEEPDP------SSDSDFSLSSYSTTSGTPRKTLLSQQRPPS 174

Query: 155 PEPLWLQTERQIQPLELPRSSDDLLIPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDFCA 214
           PEPLWLQ  +++ PL LP+SSDDLL+PRE VM  LSIYEVLRHF++L+RLS FRFEDFCA
Sbjct: 175 PEPLWLQN-KELPPLNLPKSSDDLLVPRELVMPCLSIYEVLRHFRTLVRLSAFRFEDFCA 233

Query: 215 VLNFEEQSNLLVEIHVSLLKTIFREEDTQQTHFGPLDQKDSANSVLYFIDAMTWPEALRS 274
            L  E+Q+NLL EIH+ L+K + REED+QQTHFGPLDQKDS N  LYF+D+MTW EALRS
Sbjct: 234 ALMCEDQTNLLAEIHIMLIKALLREEDSQQTHFGPLDQKDSVNVSLYFVDSMTWSEALRS 293

Query: 275 YIESDKTFDEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILITSPVREDLIHEGGFQYDD 334
           Y+ESDK+FD+ +L+IL+TCEYPFT++E R++VLQFLTDQ LIT+PVREDL+HEG   YDD
Sbjct: 294 YVESDKSFDQNILHILSTCEYPFTSVEDRIKVLQFLTDQFLITNPVREDLLHEGNMHYDD 353

Query: 335 HCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDVEK 394
           HCRVCHR+G+LLCCETCPAVFHLECV+PPL DVP EDWQC+ CKAHKVTGV DC+PDVEK
Sbjct: 354 HCRVCHRLGDLLCCETCPAVFHLECVEPPLVDVPTEDWQCSTCKAHKVTGVADCIPDVEK 413

Query: 395 SGLLCRQEHLGFDRAGRKYWFLSRRIFM 422
           +G LCRQEHLGFDR G+KYWFL+RRIF+
Sbjct: 414 NGSLCRQEHLGFDRHGKKYWFLARRIFV 441

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380014032|ref|XP_003691048.1| PREDICTED: LOW QUALITY PROTEIN: nucleosome-remodeling factor subunit NURF301-like [Apis florea] Back     alignment and taxonomy information
>gi|340712315|ref|XP_003394707.1| PREDICTED: nucleosome-remodeling factor subunit NURF301-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|383857078|ref|XP_003704033.1| PREDICTED: LOW QUALITY PROTEIN: nucleosome-remodeling factor subunit NURF301-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|350417610|ref|XP_003491506.1| PREDICTED: nucleosome-remodeling factor subunit NURF301-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|345482162|ref|XP_001605087.2| PREDICTED: nucleosome-remodeling factor subunit NURF301 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307206270|gb|EFN84335.1| Nucleosome-remodeling factor subunit NURF301 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332027303|gb|EGI67387.1| Nucleosome-remodeling factor subunit [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|242013553|ref|XP_002427469.1| fetal alzheimer antigen, falz, putative [Pediculus humanus corporis] gi|212511855|gb|EEB14731.1| fetal alzheimer antigen, falz, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|357621017|gb|EHJ73003.1| putative fetal alzheimer antigen, falz [Danaus plexippus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query422
FB|FBgn0000541 2669 E(bx) "Enhancer of bithorax" [ 0.637 0.100 0.639 2e-108
UNIPROTKB|F5GXF5 2457 BPTF "Nucleosome-remodeling fa 0.613 0.105 0.576 3.2e-87
UNIPROTKB|Q12830 3046 BPTF "Nucleosome-remodeling fa 0.613 0.085 0.576 9.8e-87
UNIPROTKB|F1LWS6 822 F1LWS6 "Uncharacterized protei 0.613 0.315 0.573 2.4e-85
UNIPROTKB|E1C5C7 2789 BPTF "Uncharacterized protein" 0.613 0.092 0.580 1.3e-84
UNIPROTKB|E1C5C8 2802 BPTF "Uncharacterized protein" 0.613 0.092 0.580 1.3e-84
UNIPROTKB|F1PFZ4 2716 BPTF "Uncharacterized protein" 0.649 0.100 0.555 1.5e-84
UNIPROTKB|J9JHE8 2842 BPTF "Uncharacterized protein" 0.649 0.096 0.555 1.7e-84
UNIPROTKB|E7ETD6 2764 BPTF "Nucleosome-remodeling fa 0.613 0.093 0.576 2e-84
UNIPROTKB|F1N3U7 2853 BPTF "Uncharacterized protein" 0.613 0.090 0.576 2.2e-84
FB|FBgn0000541 E(bx) "Enhancer of bithorax" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 977 (349.0 bits), Expect = 2.0e-108, Sum P(2) = 2.0e-108
 Identities = 172/269 (63%), Positives = 211/269 (78%)

Query:   154 SPEPLWLQTERQIQPLELPRSSDDLLIPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDFC 213
             SPEP+WLQ  RQ   L+LP SS+DL I   +V++ LSIYEVLR F+ ++RLSPFRFED C
Sbjct:   160 SPEPVWLQEGRQYAALDLPDSSEDLFIANTHVLRALSIYEVLRRFRHMVRLSPFRFEDLC 219

Query:   214 AVLNFEEQSNLLVEIHVSLLKTIFREEDTQQTHFGPLDQKDSANSVLYFIDAMTWPEALR 273
             A L  EEQS LL E+H+ LLK I REED Q THFGPLDQKD+ N  LY ID++TWPE LR
Sbjct:   220 AALACEEQSALLTEVHIMLLKAILREEDAQGTHFGPLDQKDTVNISLYLIDSITWPEVLR 279

Query:   274 SYIESDKTFDEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILITSPVREDLIHEGGFQYD 333
             SY+ESDKTFD  V +IL+  EYP+T I+ RL VLQFL+DQ L ++ +R+ ++ EG   YD
Sbjct:   280 SYVESDKTFDRNVFHILSHTEYPYTGIDNRLEVLQFLSDQFLTSNSIRDVMLQEGPIHYD 339

Query:   334 DHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDVE 393
             DHCRVCHR+G+LLCCETCPAV+HLECVDPP+ DVP EDWQC LC++HKV+GV DC+   E
Sbjct:   340 DHCRVCHRLGDLLCCETCPAVYHLECVDPPMNDVPTEDWQCGLCRSHKVSGVVDCVLPQE 399

Query:   394 KSGLLCRQEHLGFDRAGRKYWFLSRRIFM 422
             K G+L R + LG DR GRKYWF++RRIF+
Sbjct:   400 KQGVLIRHDSLGVDRHGRKYWFIARRIFI 428
GO:0042766 "nucleosome mobilization" evidence=IDA;TAS
GO:0006351 "transcription, DNA-dependent" evidence=IMP;IDA
GO:0016589 "NURF complex" evidence=NAS;IDA;TAS
GO:0006334 "nucleosome assembly" evidence=NAS
GO:0030097 "hemopoiesis" evidence=IMP
GO:0006338 "chromatin remodeling" evidence=IMP
GO:0003677 "DNA binding" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0035076 "ecdysone receptor-mediated signaling pathway" evidence=IGI
GO:0035073 "pupariation" evidence=IMP
GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IPI
GO:0048813 "dendrite morphogenesis" evidence=IMP
GO:0006325 "chromatin organization" evidence=IMP
GO:0045747 "positive regulation of Notch signaling pathway" evidence=IGI;IMP
GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI
GO:0046331 "lateral inhibition" evidence=IMP
UNIPROTKB|F5GXF5 BPTF "Nucleosome-remodeling factor subunit BPTF" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q12830 BPTF "Nucleosome-remodeling factor subunit BPTF" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1LWS6 F1LWS6 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C5C7 BPTF "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C5C8 BPTF "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PFZ4 BPTF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9JHE8 BPTF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E7ETD6 BPTF "Nucleosome-remodeling factor subunit BPTF" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N3U7 BPTF "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
pfam0279161 pfam02791, DDT, DDT domain 7e-16
smart0057163 smart00571, DDT, domain in different transcription 7e-13
pfam0062851 pfam00628, PHD, PHD-finger 2e-12
smart0024947 smart00249, PHD, PHD zinc finger 2e-09
cd04718148 cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homol 9e-06
cd11726127 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-tha 4e-04
cd11672120 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD 0.004
>gnl|CDD|202398 pfam02791, DDT, DDT domain Back     alignment and domain information 
 Score = 71.1 bits (175), Expect = 7e-16
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 185 VMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVLNFEEQSNLLVEIHVSLLKTIFREEDT 242
               L ++E L  F  ++ LSPF  +DF   L   +   LL E+H++LLK +  +E+ 
Sbjct: 4   FGDLLMVWEFLNTFGEVLGLSPFTLDDFEEALLCTDSEELLGEVHIALLKLLVADEED 61

This domain is approximately 60 residues in length, and is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is exclusively associated with nuclear domains, and is thought to be arranged into three alpha helices. Length = 61
>gnl|CDD|214726 smart00571, DDT, domain in different transcription and chromosome remodeling factors Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|240069 cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>gnl|CDD|213034 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-thalassemia/mental retardation, X-linked) Back     alignment and domain information
>gnl|CDD|213032 cd11672, ADDz, ADDz for ATRX, Dnmt3 and Dnmt3l PHD-like zinc finger domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 422
KOG1473|consensus 1414 100.0
PF0279161 DDT: DDT domain; InterPro: IPR004022 This domain i 99.65
smart0057163 DDT domain in different transcription and chromoso 99.64
KOG4299|consensus 613 98.78
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.46
KOG0825|consensus 1134 98.38
KOG1244|consensus336 98.31
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 98.3
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.29
KOG0383|consensus 696 98.26
KOG0955|consensus 1051 98.03
KOG0954|consensus 893 97.97
KOG1973|consensus274 97.87
KOG0956|consensus 900 97.76
KOG1512|consensus381 97.55
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.4
KOG0957|consensus707 97.18
KOG4323|consensus 464 97.17
KOG1245|consensus 1404 97.01
COG5141 669 PHD zinc finger-containing protein [General functi 97.0
KOG4443|consensus 694 96.94
KOG1473|consensus 1414 96.91
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 95.98
PF1561338 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2 95.38
KOG4299|consensus 613 94.21
KOG0957|consensus 707 92.92
PF0217813 AT_hook: AT hook motif; InterPro: IPR017956 AT hoo 91.83
KOG1512|consensus381 90.99
KOG4628|consensus348 90.22
PF1561250 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 89.88
PF1444654 Prok-RING_1: Prokaryotic RING finger family 1 89.1
smart0038426 AT_hook DNA binding domain with preference for A/T 88.68
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 88.32
KOG1246|consensus 904 85.06
KOG1081|consensus 463 84.71
KOG3612|consensus 588 83.06
KOG0383|consensus696 80.52
>KOG1473|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.2e-77  Score=649.84  Aligned_cols=411  Identities=41%  Similarity=0.677  Sum_probs=347.5

Q ss_pred             CCcc-CCCCCCCCCCCCCC-CCcccccccccchhhhhhhccCCCCCCCCCCCCCCCC---CC-cccccccc--CCCCCCC
Q psy5116           1 MYGR-IKRRGRPPKTPNTE-RPKFQVHLLKKPQYLQNLEARGLNSPITSRTSSPQGS---ET-SRRSTAKK--GTKRKSN   72 (422)
Q Consensus         1 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~--~~~~~~~   72 (422)
                      |+|+ +|.||||||.+.++ ... -+.++|||+|+.. +++. .|+.++|.-+++.+   .. ++.|....  |. +...
T Consensus         1 m~g~~arpRGRp~k~p~~e~~nr-~~~~~kkp~~~~e-~~~p-~s~l~~r~~~d~~d~~~~~~k~~s~d~~~~rv-~~e~   76 (1414)
T KOG1473|consen    1 MEGKVARPRGRPRKRPRSEDGNR-SINRGKKPVEEVE-SAVP-RSLLGKRYLKDGDDKKVFLGKIVSYDTGLYRV-KYED   76 (1414)
T ss_pred             CCCCCCCCCCCCCCCCCcccccc-hhhhccCcccccc-ccCc-cccccccccCCccchhhhhcccccccCcceeE-Eeec
Confidence            8999 99999999999955 334 8999999999988 5555 99999999999887   22 22222211  11 1111


Q ss_pred             CCCCCCCCCCcc------CccccccccccCCCCCCCCCC--CCcC--CCCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q psy5116          73 PPTRGGRGGNQK------RKQTLETDYHYGSDFEDSTDH--DDDL--GLSESETEPEKDDPLDEMSDSDLSLSSFSTTSG  142 (422)
Q Consensus        73 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  142 (422)
                      ...+..+.++..      .+.+ +..+||++||+|.+++  |+++  ..+++++|+.  .-.-+++.+-+|.++|+.+.+
T Consensus        77 ~~~~~~~~s~v~~~~~s~s~~~-eet~~rr~dl~d~~edk~d~~dd~e~~e~~~ed~--~~~N~~~~v~~se~~~n~t~~  153 (1414)
T KOG1473|consen   77 GDVESLEASTVRPLIISDSGKD-EETRPRRKDLDDQEEDKDDKKDDSEEEEKDDEDP--FMCNEDSSVQESESGLNYTDI  153 (1414)
T ss_pred             cccccccccccccccccccccc-ccccccccchhhhhhhhhhcccccccccccccch--hhcCchhhhhhhhcccccCCC
Confidence            111111122221      1234 8899999999995432  1111  1111111111  011235667779999998875


Q ss_pred             ccCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCChHhHHHHHHHHHHHHhcccccccCCcCHHHHHHHHccCCCc
Q psy5116         143 TNKKFSYISRMSPEPLWLQTERQIQPLELPRSSDDLLIPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVLNFEEQS  222 (422)
Q Consensus       143 ~~~~~~~~~~~~p~p~~~~~~~~~p~l~lP~ss~d~~ip~e~vg~~L~v~efL~~F~~~L~LsPFtledf~~AL~~~~~~  222 (422)
                      . |   +++++.|.|-|.+++..+|+|+||.||+|+.||++.|+++|+||+|||+|+.+|+|+||+|||||+||.+.+++
T Consensus       154 ~-~---~~~~d~~~p~~~~e~~~vPpleLP~SSedi~IPne~Vm~alsIYevLRsF~~~LrisPF~feDFcaAL~~~~~s  229 (1414)
T KOG1473|consen  154 G-R---PPRLDEPNPDLEEEPPLVPPLELPESSEDIGIPNEHVMDALSIYEVLRSFSRQLRISPFRFEDFCAALISHEQS  229 (1414)
T ss_pred             C-C---CCCCCCCCCChhhccccCCCccCCCcccccCCcHHHHHHHHHHHHHHHhhcceEEeCCccHHHHHHHHHhcCch
Confidence            4 5   56778888888877799999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhhhcccccccccccCCCCcCCccchhhccCCcCHHHHHHHHhhcCCCCcHHHHHhhh----CCCCCCc
Q psy5116         223 NLLVEIHVSLLKTIFREEDTQQTHFGPLDQKDSANSVLYFIDAMTWPEALRSYIESDKTFDEEVLNILN----TCEYPFT  298 (422)
Q Consensus       223 ~LL~EiHiaLLk~ll~~~~~~~~~~~~l~~~~s~ni~~~~LD~lTWPEiLr~YLes~~~f~~~vLkiL~----~~~YPfv  298 (422)
                      .||+|+|+||||+|+++++.++++|+++++++++||.|+|||.+|||||||+|+++++.++..+..++.    -.+||+.
T Consensus       230 sLlaeVHvaLLrA~lr~eD~~~Thfs~~d~KdsvnI~l~liD~lTWPevLrqY~ea~~~ad~~v~~~~n~fv~~~eY~~~  309 (1414)
T KOG1473|consen  230 SLLAEVHVALLRALLREEDRLSTHFSPLDSKDSVNIDLYLIDTLTWPEVLRQYFEADKHADGPVWDIFNPFVVEDEYPYR  309 (1414)
T ss_pred             hHHHHHHHHHHHHHhhhhhhcccccCccccccceeeeeehhccccHHHHHHHHHHhccccCcchhhhhcccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999887777776    5789999


Q ss_pred             hhhHHHHHHHHhhhhhcccCcccccccccCCccccccccccccCCeeEeCCCCCCccccccCCCCCCCCCCCCccccccc
Q psy5116         299 NIEKRLRVLQFLTDQILITSPVREDLIHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCK  378 (422)
Q Consensus       299 ~vE~KLkVLQfL~Dq~L~t~~vRee~~~e~~~~~dd~C~vC~~gG~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~  378 (422)
                      ++++|++|||||+|+||..+..|++++++++++.+++|++|++.|+++||..||+.||+.|+.||+..+|...|.|-.|.
T Consensus       310 pv~~klkILQ~L~Dq~l~~~s~R~e~~se~~~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~  389 (1414)
T KOG1473|consen  310 PVSNKLKILQFLCDQFLTVNSLRDEIDSEGEIEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCN  389 (1414)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhcccceeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcccCCchhhhcccccccccceeecCCCeeeeeeceecC
Q psy5116         379 AHKVTGVTDCLPDVEKSGLLCRQEHLGFDRAGRKYWFLSRRIFM  422 (422)
Q Consensus       379 ~~k~~g~~dc~~~~ek~~~l~r~e~lg~Dr~gR~yw~~~rri~v  422 (422)
                      .+++.|+.+|+.+.+|+....|+++||+|||||+|||+.|||+|
T Consensus       390 ~hkvngvvd~vl~~~K~~~~iR~~~iG~dr~gr~ywfi~rrl~I  433 (1414)
T KOG1473|consen  390 IHKVNGVVDCVLPPSKNVDSIRHTPIGRDRYGRKYWFISRRLRI  433 (1414)
T ss_pred             hhccCcccccccChhhcccceeccCCCcCccccchhceeeeeEE
Confidence            99999999999999999999999999999999999999999987

>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain Back     alignment and domain information
>smart00571 DDT domain in different transcription and chromosome remodeling factors Back     alignment and domain information
>KOG4299|consensus Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0825|consensus Back     alignment and domain information
>KOG1244|consensus Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG0383|consensus Back     alignment and domain information
>KOG0955|consensus Back     alignment and domain information
>KOG0954|consensus Back     alignment and domain information
>KOG1973|consensus Back     alignment and domain information
>KOG0956|consensus Back     alignment and domain information
>KOG1512|consensus Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0957|consensus Back     alignment and domain information
>KOG4323|consensus Back     alignment and domain information
>KOG1245|consensus Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG4443|consensus Back     alignment and domain information
>KOG1473|consensus Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2 Back     alignment and domain information
>KOG4299|consensus Back     alignment and domain information
>KOG0957|consensus Back     alignment and domain information
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions Back     alignment and domain information
>KOG1512|consensus Back     alignment and domain information
>KOG4628|consensus Back     alignment and domain information
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B Back     alignment and domain information
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1 Back     alignment and domain information
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>KOG1246|consensus Back     alignment and domain information
>KOG1081|consensus Back     alignment and domain information
>KOG3612|consensus Back     alignment and domain information
>KOG0383|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
1xwh_A66 Nmr Structure Of The First Phd Finger Of Autoimmune 9e-11
2kft_A56 Nmr Solution Structure Of The First Phd Finger Doma 9e-10
1fp0_A88 Solution Structure Of The Phd Domain From The Kap-1 4e-09
3o33_A184 Crystal Structure Of Trim24 Phd-Bromo In The Free S 7e-09
3u5m_A 207 Crystal Structure Of Trim33 Phd-Bromo In The Free S 9e-09
1mm2_A61 Solution Structure Of The 2nd Phd Domain From Mi2b 1e-08
2yql_A56 Solution Structure Of The Phd Domain In Phd Finger 3e-08
1mm3_A61 Solution Structure Of The 2nd Phd Domain From Mi2b 3e-08
2l5u_A61 Structure Of The First Phd Finger (Phd1) From Chd4 4e-08
2ro1_A189 Nmr Solution Structures Of Human Kap1 Phd Finger-Br 6e-08
2puy_A60 Crystal Structure Of The Bhc80 Phd Finger Length = 7e-08
1f62_A51 Wstf-Phd Length = 51 1e-05
3sou_A70 Structure Of Uhrf1 Phd Finger In Complex With Histo 2e-04
3zvz_B57 Phd Finger Of Human Uhrf1 Length = 57 2e-04
2ysm_A111 Solution Structure Of The First And Second Phd Doma 3e-04
3ask_A226 Structure Of Uhrf1 In Complex With Histone Tail Len 6e-04
4gy5_A241 Crystal Structure Of The Tandem Tudor Domain And Pl 6e-04
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune Regulator Protein (Aire1): Insights Into Apeced Length = 66 Back     alignment and structure 
Iteration: 1

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 333 DDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLC 377
           +D C VC   GEL+CC+ CP  FHL C+ PPLR++P   W+C+ C
Sbjct: 8   EDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSC 52
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of Human Autoimmune Regulator (Aire) In Complex With Histone H3(1-20cys) Peptide Length = 56 Back     alignment and structure
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1 Corepressor Length = 88 Back     alignment and structure
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 Back     alignment and structure
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 Back     alignment and structure
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b Length = 61 Back     alignment and structure
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein 21a Length = 56 Back     alignment and structure
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C- Terminal Loop Replaced By Corresponding Loop From Wstf Length = 61 Back     alignment and structure
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b) Length = 61 Back     alignment and structure
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd Finger-Bromodomain Length = 189 Back     alignment and structure
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger Length = 60 Back     alignment and structure
>pdb|1F62|A Chain A, Wstf-Phd Length = 51 Back     alignment and structure
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3 1-9 Peptide Length = 70 Back     alignment and structure
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1 Length = 57 Back     alignment and structure
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3 Homolog Length = 111 Back     alignment and structure
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail Length = 226 Back     alignment and structure
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant Homeodomain Of Uhrf1 With Histone H3k9me3 Length = 241 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query422
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 6e-24
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 1e-23
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 5e-23
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 1e-22
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 1e-21
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 1e-21
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 3e-19
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 1e-16
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 2e-16
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 3e-15
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 2e-13
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 6e-13
3a1b_A159 DNA (cytosine-5)-methyltransferase 3A, histone H3; 8e-13
3u5n_A 207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 2e-12
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 3e-12
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 6e-12
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 8e-12
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 2e-05
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 1e-11
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 3e-11
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 3e-11
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 3e-11
2pv0_B 386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 2e-10
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 3e-10
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 1e-09
2k16_A75 Transcription initiation factor TFIID subunit 3; p 4e-09
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 1e-08
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 2e-08
2yt5_A66 Metal-response element-binding transcription facto 1e-07
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 3e-06
1x4i_A70 Inhibitor of growth protein 3; structural genomics 3e-06
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 8e-06
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 2e-05
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 5e-05
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 2e-04
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 2e-04
1weu_A91 Inhibitor of growth family, member 4; structural g 4e-04
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 Back     alignment and structure
 Score = 93.2 bits (232), Expect = 6e-24
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 331 QYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTG 384
            + + CRVC   GELLCC+TCP+ +H+ C++PPL ++P  +W C  C    + G
Sbjct: 7   HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG 60
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Length = 159 Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386 Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Length = 59 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Length = 71 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Length = 91 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 99.56
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 99.48
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 99.47
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 99.47
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 99.43
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 99.42
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 99.41
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 99.41
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 99.39
3u5n_A 207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 99.38
2yt5_A66 Metal-response element-binding transcription facto 99.28
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 99.27
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 99.26
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 99.23
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 99.21
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 99.2
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 99.2
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 99.17
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 99.14
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 99.14
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 99.07
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 99.03
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 99.0
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 98.95
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 98.88
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 98.88
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 98.87
2k16_A75 Transcription initiation factor TFIID subunit 3; p 98.86
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 98.74
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 98.67
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 98.65
1weu_A91 Inhibitor of growth family, member 4; structural g 98.65
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 98.61
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 98.6
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 98.45
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 98.26
1we9_A64 PHD finger family protein; structural genomics, PH 98.03
1x4i_A70 Inhibitor of growth protein 3; structural genomics 97.96
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 97.87
3o70_A68 PHD finger protein 13; PHF13, structural genomics 97.85
1wil_A89 KIAA1045 protein; ring finger domain, structural g 97.81
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 97.69
1wee_A72 PHD finger family protein; structural genomics, PH 97.69
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 97.68
1wew_A78 DNA-binding family protein; structural genomics, P 97.54
1wem_A76 Death associated transcription factor 1; structura 97.52
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 97.42
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 97.38
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 97.13
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 97.06
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 96.8
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 96.67
3a1b_A159 DNA (cytosine-5)-methyltransferase 3A, histone H3; 96.39
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 96.27
3kv5_D 488 JMJC domain-containing histone demethylation prote 96.26
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 95.81
2pv0_B 386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 95.68
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 94.89
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 94.68
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 94.19
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 92.01
3rsn_A177 SET1/ASH2 histone methyltransferase complex subun; 85.2
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 83.0
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
Probab=99.56  E-value=1.9e-15  Score=116.33  Aligned_cols=57  Identities=42%  Similarity=1.162  Sum_probs=52.2

Q ss_pred             CCccccccccccccCCeeEeCCCCCCccccccCCCCCCCCCCCCcccccccccccCC
Q psy5116         328 GGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTG  384 (422)
Q Consensus       328 ~~~~~dd~C~vC~~gG~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k~~g  384 (422)
                      +++.+++.|.+|+.+|+||+||.|+++||+.|++|++..+|.++|+|+.|.....+|
T Consensus         4 ~~d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k~   60 (61)
T 1mm2_A            4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG   60 (61)
T ss_dssp             CSCSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCTT
T ss_pred             cccCCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhcC
Confidence            345678899999999999999999999999999999999999999999999887665
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 422
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 5e-17
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 9e-17
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 3e-14
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 5e-11
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 8e-11
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 3e-10
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 9e-09
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 5e-05
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 0.004
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (178), Expect = 5e-17
 Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 333 DDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDV 392
              CRVC + G+L+ C  C   FHL+C  P L+DVP E+W C+LC  H +  + +   D+
Sbjct: 7   ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC--HVLPDLKEEDVDL 64

Query: 393 EKS 395
           +  
Sbjct: 65  QAC 67
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query422
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 99.39
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 99.28
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 99.04
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.71
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 98.36
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 98.29
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.19
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.18
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 97.82
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.57
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 96.81
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 90.44
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 89.93
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 84.83
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 80.56
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.1e-13  Score=104.28  Aligned_cols=57  Identities=40%  Similarity=1.114  Sum_probs=51.7

Q ss_pred             CccccccccccccCCeeEeCCCCCCccccccCCCCCCCCCCCCcccccccccccCCc
Q psy5116         329 GFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGV  385 (422)
Q Consensus       329 ~~~~dd~C~vC~~gG~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k~~g~  385 (422)
                      .+.++++|.+|+++|+||+||.|+.+||+.|+++++..+|.+.|+|+.|.....+|+
T Consensus         5 ~d~~~~~C~~C~~~g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~~kgk   61 (61)
T d1mm2a_           5 SDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGK   61 (61)
T ss_dssp             SCSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCTTC
T ss_pred             ccCCcCCCcCCCCCCeEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCcccCCC
Confidence            455778999999999999999999999999999999999999999999998876653
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure