Psyllid ID: psy5139

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MTTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQNLSSDMHMTGLASRF
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccEEEcccccccEEEccccccccccEEEEEccccccEEEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHHcccEccccHHcccccccHHHHHEEHHHHHHccccEEEEEcccccccHcHHHHcccHHHHHHHcHHHHHHHHHEEEccccccccccEEEEEEEEcccccEEEEEEccccccccEEEEEEccccccEEEEEEEEcccccccEEEEcc
Coil and Loop (DISEMBL)
MTTLLGVeipqeyggpglsfmtDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGtteqkekylprlaqtdlmgveipqeyggpglsfmtDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGtteqkekylprlaqtdvsrtsrgyKALEWHafygrtdslplndhlshissgcvgfdgQLKRWMVSCGLSLQILQFQNLSSDMHMTGLASRF
Flexible Loop (DISEMBL)
mttllgveipqeyggpgLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLgtteqkekylprlaqtdlMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGtteqkekylprlaqtdvsrtsRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQNLSSDMHMTGLASRF
Low Complexity Region (SEG)
MTTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQNLSSDMHMTGLASRF
Disordered region (IsUnstruct)
****LGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQNL*************
Disordered Region (DISOPRED)
MTTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQNLSSDMHMTGLASRF
Disordered Region (DISEMBL)
MTTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQNLSSDMHMTGLASRF
Disordered Region (DISPRO)
*TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQNLSSDMHMTGLASRF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQNLSSDMHMTGLASRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q5EAD4	432	Short/branched chain spec	yes	N/A	0.351	0.175	0.539	1e-17
P45954	432	Short/branched chain spec	yes	N/A	0.342	0.171	0.533	9e-17
Q54RR5	413	Probable short/branched c	yes	N/A	0.393	0.205	0.453	9e-17
Q5RF40	432	Short/branched chain spec	yes	N/A	0.342	0.171	0.533	1e-16
P70584	432	Short/branched chain spec	yes	N/A	0.319	0.159	0.514	2e-15
Q9DBL1	432	Short/branched chain spec	yes	N/A	0.319	0.159	0.5	7e-15
P45857	379	Acyl-CoA dehydrogenase OS	yes	N/A	0.356	0.203	0.324	7e-10
Q3SZI8	426	Isovaleryl-CoA dehydrogen	no	N/A	0.337	0.171	0.383	1e-09
P12007	424	Isovaleryl-CoA dehydrogen	no	N/A	0.337	0.172	0.356	6e-09
Q9JHI5	424	Isovaleryl-CoA dehydrogen	no	N/A	0.337	0.172	0.356	8e-09

>sp|Q5EAD4|ACDSB_BOVIN Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADSB PE=2 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 55/76 (72%)

Query: 68  LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
           L Q  LMG+EI  +YGG G SF + +L++EE+A+VD SV+++ DIQNTL+N +I K GT 
Sbjct: 97  LFQQGLMGIEIDTKYGGTGASFFSSVLVIEELAKVDASVALVCDIQNTLINRMIGKYGTE 156

Query: 128 EQKEKYLPRLAQTDVS 143
           EQK  YLP+LA    S
Sbjct: 157 EQKATYLPKLATEKAS 172

Has greatest activity toward short branched chain acyl-CoA derivative such as (s)-2-methylbutyryl-CoA, isobutyryl-CoA, and 2-methylhexanoyl-CoA as well as toward short straight chain acyl-CoAs such as butyryl-CoA and hexanoyl-CoA. Can use valproyl-CoA as substrate and may play a role in controlling the metabolic flux of valproic acid in the development of toxicity of this agent.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: 3EC: .EC: 9EC: 9EC: .EC: -

>sp|P45954|ACDSB_HUMAN Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADSB PE=1 SV=1

 Score = 87.0 bits (214), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 54/75 (72%)

Query: 68  LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
           L Q  LMG+E+  EYGG G SF++ +L++EE+A+VD SV++  +IQNTL+N LI K GT 
Sbjct: 97  LFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTE 156

Query: 128 EQKEKYLPRLAQTDV 142
           EQK  YLP+L    V
Sbjct: 157 EQKATYLPQLTTEKV 171

Has greatest activity toward short branched chain acyl-CoA derivative such as (s)-2-methylbutyryl-CoA, isobutyryl-CoA, and 2-methylhexanoyl-CoA as well as toward short straight chain acyl-CoAs such as butyryl-CoA and hexanoyl-CoA. Can use valproyl-CoA as substrate and may play a role in controlling the metabolic flux of valproic acid in the development of toxicity of this agent.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|Q54RR5|ACDSB_DICDI Probable short/branched chain specific acyl-CoA dehydrogenase OS=Dictyostelium discoideum GN=acadsb PE=3 SV=1

 Score = 87.0 bits (214), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 60/86 (69%)

Query: 57  TTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL 116
           T+E  +  L  L   +LMG++I   YGG  ++FM  I+ +EE+A+VDP++S++VD+QNTL
Sbjct: 64  TSELNKGLLKDLFDMNLMGIDISDSYGGANMNFMGSIIAIEELAKVDPAISVIVDVQNTL 123

Query: 117 VNDLIIKLGTTEQKEKYLPRLAQTDV 142
           VN+ I + G+ +Q+EKYL  LA   V
Sbjct: 124 VNNCINRYGSIQQREKYLSMLATNTV 149

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|Q5RF40|ACDSB_PONAB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=ACADSB PE=2 SV=1

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 54/75 (72%)

Query: 68  LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
           L Q  LMG+E+  EYGG G SF++ +L++EE+A+VD SV++  +IQNTL+N LI K GT 
Sbjct: 97  LFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTE 156

Query: 128 EQKEKYLPRLAQTDV 142
           EQK  YLP+L    V
Sbjct: 157 EQKGTYLPQLTTEKV 171

Has greatest activity toward short branched chain acyl-CoA derivative such as (s)-2-methylbutyryl-CoA, isobutyryl-CoA, and 2-methylhexanoyl-CoA as well as toward short straight chain acyl-CoAs such as butyryl-CoA and hexanoyl-CoA. Can use valproyl-CoA as substrate and may play a role in controlling the metabolic flux of valproic acid in the development of toxicity of this agent.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P70584|ACDSB_RAT Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadsb PE=1 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 51/70 (72%)

Query: 68  LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
           L Q  +MG+E+  +YGG   SF+  +L++EE+A+VD SV++L DIQNT++N L  K GT 
Sbjct: 97  LFQQGMMGIEVEAKYGGTEASFLCSVLVIEELAKVDASVALLCDIQNTVINKLFRKHGTE 156

Query: 128 EQKEKYLPRL 137
           EQK  YLP+L
Sbjct: 157 EQKATYLPKL 166

Has greatest activity toward short branched chain acyl-CoA derivative such as (s)-2-methylbutyryl-CoA, isobutyryl-CoA, and 2-methylhexanoyl-CoA as well as toward short straight chain acyl-CoAs such as butyryl-CoA and hexanoyl-CoA. Can use valproyl-CoA as substrate and may play a role in controlling the metabolic flux of valproic acid in the development of toxicity of this agent.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|Q9DBL1|ACDSB_MOUSE Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadsb PE=1 SV=1

 Score = 80.5 bits (197), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 50/70 (71%)

Query: 68  LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
           L Q  LMG+E+  +YGG   SF   +L++EE+A+VD SV++L DIQNT++N+L  K  + 
Sbjct: 97  LFQQGLMGIEVEAQYGGTEASFFCSVLVIEELAKVDASVALLCDIQNTIINNLFRKHASE 156

Query: 128 EQKEKYLPRL 137
           EQK  YLP+L
Sbjct: 157 EQKATYLPKL 166

Has greatest activity toward short branched chain acyl-CoA derivative such as (s)-2-methylbutyryl-CoA, isobutyryl-CoA, and 2-methylhexanoyl-CoA as well as toward short straight chain acyl-CoAs such as butyryl-CoA and hexanoyl-CoA. Can use valproyl-CoA as substrate and may play a role in controlling the metabolic flux of valproic acid in the development of toxicity of this agent.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgC PE=2 SV=3

 Score = 63.9 bits (154), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 48/77 (62%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
           + ++ +  LMG+ +P++YGG G   ++ IL + EI+R+  +V +++ +  ++  + I+  
Sbjct: 40  IKKMGKHGLMGIPVPEQYGGAGADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYF 99

Query: 125 GTTEQKEKYLPRLAQTD 141
           G  EQK KY+P LA  D
Sbjct: 100 GNEEQKMKYIPNLASGD 116

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 3

EC: .

EC: 9

EC: 9

EC: .

EC: -

>sp|Q3SZI8|IVD_BOVIN Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=IVD PE=2 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 46/73 (63%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           +LG+  P +YGG GL F+ ++L++EEI+RV  +V +     + L  + I++ G   QKEK
Sbjct: 92  VLGITAPVQYGGSGLGFLENVLVMEEISRVSGAVGLSYGAHSNLCINQIVRNGNETQKEK 151

Query: 64  YLPRLAQTDLMGV 76
           YLP+L   + +G 
Sbjct: 152 YLPKLISGEYIGA 164

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|P12007|IVD_RAT Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ivd PE=1 SV=2

 Score = 60.8 bits (146), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 44/73 (60%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           +LG+  P +YGG GL ++  +L++EEI+R   +V +     + L  + I++ G   QKEK
Sbjct: 90  VLGITAPVQYGGSGLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNGNEAQKEK 149

Query: 64  YLPRLAQTDLMGV 76
           YLP+L   + +G 
Sbjct: 150 YLPKLISGEFIGA 162

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

>sp|Q9JHI5|IVD_MOUSE Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Ivd PE=1 SV=1

 Score = 60.5 bits (145), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 44/73 (60%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           +LG+  P +YGG GL ++  +L++EEI+R   +V +     + L  + I++ G   QKEK
Sbjct: 90  VLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEK 149

Query: 64  YLPRLAQTDLMGV 76
           YLP+L   + +G 
Sbjct: 150 YLPKLISGEFIGA 162

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 8

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
383866177	407	PREDICTED: short/branched chain specific	0.675	0.358	0.4	3e-20
17508101	419	Protein ACDH-3 [Caenorhabditis elegans]	0.620	0.319	0.398	4e-20
341885170	422	CBN-ACDH-3 protein [Caenorhabditis brenn	0.754	0.386	0.348	7e-20
268568006	421	Hypothetical protein CBG12633 [Caenorhab	0.800	0.410	0.329	9e-20
308475057	424	CRE-ACDH-3 protein [Caenorhabditis reman	0.754	0.384	0.354	1e-19
321460436	422	hypothetical protein DAPPUDRAFT_216649 [	0.449	0.229	0.505	2e-19
406868684	439	hypothetical protein MBM_00834 [Marssoni	0.486	0.239	0.454	3e-19
380016208	414	PREDICTED: short/branched chain specific	0.361	0.188	0.602	3e-19
328783450	414	PREDICTED: short/branched chain specific	0.333	0.173	0.602	4e-19
330790553	419	hypothetical protein DICPUDRAFT_44750 [D	0.361	0.186	0.551	4e-19

>gi|383866177|ref|XP_003708547.1| PREDICTED: short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like [Megachile rotundata]

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 86/155 (55%), Gaps = 9/155 (5%)

Query: 62  EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLI 121
           E  L +L +  LMG+EIP++YGG G +FMT IL VEE+A+VD +VS LVDI NTLVN LI
Sbjct: 65  EGLLRKLFENGLMGIEIPEKYGGSGCNFMTTILTVEEVAKVDGAVSALVDIHNTLVNSLI 124

Query: 122 IKLGTTEQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFD 181
            K+ T EQKEKYLP+LAQ                AF  +T++     H  ++ +G     
Sbjct: 125 KKVATEEQKEKYLPKLAQDYAGSFCLTEPGSGSDAFSLKTEAKKEGSH--YVING----- 177

Query: 182 GQLKRWMVSCGLSLQILQFQNLSSDMHMTGLASRF 216
              K W+ +  ++   L F N +      G+ + F
Sbjct: 178 --TKMWISNSDIAGLFLVFANANPSAGYRGITTFF 210

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17508101|ref|NP_491859.1| Protein ACDH-3 [Caenorhabditis elegans] gi|351060448|emb|CCD68115.1| Protein ACDH-3 [Caenorhabditis elegans]

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 81/143 (56%), Gaps = 9/143 (6%)

Query: 70  QTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQ 129
           +  LMG+EIP++YGGPG SF   +L++EE+A+VDPSVS+ VD+QNTLV  LII+LGT EQ
Sbjct: 82  ENGLMGIEIPEKYGGPGSSFFDAVLVIEELAKVDPSVSVFVDVQNTLVAPLIIQLGTEEQ 141

Query: 130 KEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMV 189
           K+KYLP++    +   +         AF  +T +    D    + SG        K W+ 
Sbjct: 142 KQKYLPKIVTEAIGSFALSETGSGSDAFALKTTAKKDGDDF--VISGS-------KMWIT 192

Query: 190 SCGLSLQILQFQNLSSDMHMTGL 212
           + G +   L F N  S     G+
Sbjct: 193 NAGHAQFFLVFANADSAKGYKGI 215

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|341885170|gb|EGT41105.1| CBN-ACDH-3 protein [Caenorhabditis brenneri]

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 12/175 (6%)

Query: 28  EEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGL 87
           +E++ VD      V++   LV ++  K   ++  +  +    +  LMG+EIP++YGGPG 
Sbjct: 46  QEVSIVDTVRRFAVNVIKPLVREMDDK---SQMHQSVITGTFENGLMGIEIPEKYGGPGS 102

Query: 88  SFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVSRTSR 147
           SF   +L++EE+A++DPSVS+ VD+QNTLV  LII+LGT EQK+KYLP++    +   + 
Sbjct: 103 SFFDAVLVIEELAKIDPSVSVFVDVQNTLVAPLIIQLGTEEQKKKYLPKIVTEAIGSFAL 162

Query: 148 GYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQN 202
                   AF  +T +    D    + SG        K W+ + G +   L F N
Sbjct: 163 SETGSGSDAFALKTTAKKDGDDF--VISGS-------KMWITNAGHAQFFLVFAN 208

Source: Caenorhabditis brenneri

Species: Caenorhabditis brenneri

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|268568006|ref|XP_002640134.1| Hypothetical protein CBG12633 [Caenorhabditis briggsae]

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 12/185 (6%)

Query: 28  EEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGL 87
           +E++ VD      V++   LV ++  K   ++  +  +    +  LMG+EIP++YGGPG 
Sbjct: 46  QEVSIVDTVRRFAVNVIKPLVREMDDK---SQMHQSVITGTFENGLMGIEIPEKYGGPGS 102

Query: 88  SFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVSRTSR 147
           SF   +L++EE+A++DPSVS+ VD+QNTLV  LII+LG+ EQK+KYLP++    +   + 
Sbjct: 103 SFFDAVLVIEELAKIDPSVSVFVDVQNTLVAPLIIQLGSEEQKQKYLPKIVSEAIGSFAL 162

Query: 148 GYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQNLSSDM 207
                   AF  +T +    D    + SG        K W+ + G +   L F N     
Sbjct: 163 SETGSGSDAFALKTTAKKDGDDF--VISGS-------KMWITNAGHAQFFLVFANADPSK 213

Query: 208 HMTGL 212
              G+
Sbjct: 214 GYKGI 218

Source: Caenorhabditis briggsae

Species: Caenorhabditis briggsae

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|308475057|ref|XP_003099748.1| CRE-ACDH-3 protein [Caenorhabditis remanei] gi|308266403|gb|EFP10356.1| CRE-ACDH-3 protein [Caenorhabditis remanei]

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 12/175 (6%)

Query: 28  EEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGL 87
           +EI+ VD      V++   LV ++  K   ++  +  +    +  LMG+EIP++YGGPG 
Sbjct: 46  QEISIVDTVRRFAVNVIKPLVREMDDK---SQMHQSVITGTFENGLMGIEIPEKYGGPGS 102

Query: 88  SFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVSRTSR 147
           SF   +L++EE+A+VDPSVS+ VD+QNTLV  LII+LG  EQK+KYLP++    +   + 
Sbjct: 103 SFFDAVLVIEELAKVDPSVSVFVDVQNTLVAPLIIQLGNEEQKQKYLPKIVTEAIGSFAL 162

Query: 148 GYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQN 202
                   AF  +T +    D    + SG        K W+ + G +   L F N
Sbjct: 163 SETGSGSDAFALKTTAKKDGDDF--VISGS-------KMWITNAGHAQFFLVFAN 208

Source: Caenorhabditis remanei

Species: Caenorhabditis remanei

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|321460436|gb|EFX71478.1| hypothetical protein DAPPUDRAFT_216649 [Daphnia pulex]

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 65/97 (67%)

Query: 73  LMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 132
           LMG+EI  EYGG G SFM+ I+ +EE+A++DP+VS+  DIQNTL+N L  KLGT EQK+K
Sbjct: 90  LMGLEIDAEYGGAGASFMSAIVTIEELAKIDPAVSVFCDIQNTLINTLFRKLGTQEQKDK 149

Query: 133 YLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDH 169
           YLP+LAQ  V             AF  +T ++  +DH
Sbjct: 150 YLPKLAQDTVGSFCLSEAESGSDAFSLKTRAIKSDDH 186

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|406868684|gb|EKD21721.1| hypothetical protein MBM_00834 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 75/110 (68%), Gaps = 5/110 (4%)

Query: 38  SILVDIQNTLVNDLII-KLGTTEQKEKYLP----RLAQTDLMGVEIPQEYGGPGLSFMTD 92
           + + D  +   ND+I+ K+   ++KE   P    +L +  LMGVEIP+EYGG G++F   
Sbjct: 66  AAMADSVSKFANDVIVPKVREMDEKESMDPAVVEQLFEQGLMGVEIPEEYGGAGMNFTAA 125

Query: 93  ILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDV 142
           I+ +EE+ARVDPSVS+LVD+ NTLVN  ++K G+ E K+++LP+LA   V
Sbjct: 126 IVGIEELARVDPSVSVLVDVHNTLVNTAVLKWGSAELKKRWLPKLATNTV 175

Source: Marssonina brunnea f. sp. 'multigermtubi' MB_m1

Species: Marssonina brunnea

Genus: Marssonina

Family: Dermateaceae

Order: Helotiales

Class: Leotiomycetes

Phylum: Ascomycota

>gi|380016208|ref|XP_003692080.1| PREDICTED: short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like [Apis florea]

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 61/78 (78%)

Query: 62  EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLI 121
           E  + +L +  LMG+EIP++YGG G +FMT IL VEE+A+VD SV+ L+DI NTLVN LI
Sbjct: 72  EGLIRKLFENGLMGIEIPEKYGGSGCNFMTTILSVEEVAKVDGSVAALIDIHNTLVNSLI 131

Query: 122 IKLGTTEQKEKYLPRLAQ 139
            K+ T EQK++YLPRLAQ
Sbjct: 132 KKVATEEQKKRYLPRLAQ 149

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783450|ref|XP_393211.4| PREDICTED: short/branched chain specific acyl-CoA dehydrogenase, mitochondrial-like [Apis mellifera]

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 61/78 (78%)

Query: 62  EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLI 121
           E  + +L +  LMG+EIP++YGG G +FMT IL VEE+A+VD SV+ L+DI NTLVN LI
Sbjct: 72  EGLIRKLFENGLMGIEIPEKYGGSGCNFMTTILSVEEVAKVDGSVAALIDIHNTLVNSLI 131

Query: 122 IKLGTTEQKEKYLPRLAQ 139
            K+ T EQK++YLPRLAQ
Sbjct: 132 KKVATEEQKKRYLPRLAQ 149

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|330790553|ref|XP_003283361.1| hypothetical protein DICPUDRAFT_44750 [Dictyostelium purpureum] gi|325086786|gb|EGC40171.1| hypothetical protein DICPUDRAFT_44750 [Dictyostelium purpureum]

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 62/78 (79%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
           L  L + DLMG+EIP++YGG G++FM+ I+ +EE+A+VDPS+S++VD+QNTLVN+ I + 
Sbjct: 78  LKNLFEMDLMGIEIPEQYGGAGMNFMSSIIAIEELAKVDPSISVIVDVQNTLVNNCINRY 137

Query: 125 GTTEQKEKYLPRLAQTDV 142
           G  EQK+KYL  LA+  V
Sbjct: 138 GNEEQKKKYLSLLAKNTV 155

Source: Dictyostelium purpureum

Species: Dictyostelium purpureum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
ZFIN|ZDB-GENE-070410-109	422	acadsb "acyl-CoA dehydrogenase	0.328	0.168	0.597	5e-21
WB|WBGene00019433	419	acdh-3 [Caenorhabditis elegans	0.800	0.412	0.345	7.4e-21
UNIPROTKB|G4NFW7	445	MGG_08690 "Short-chain specifi	0.879	0.426	0.338	9.7e-20
UNIPROTKB|Q5EAD4	432	ACADSB "Short/branched chain s	0.444	0.222	0.463	1.8e-19
UNIPROTKB|B4DQ51	330	ACADSB "cDNA FLJ57418, highly	0.388	0.254	0.482	1.1e-18
FB|FBgn0036824	414	CG3902 [Drosophila melanogaste	0.537	0.280	0.424	1.6e-18
UNIPROTKB|P45954	432	ACADSB "Short/branched chain s	0.425	0.212	0.462	1.4e-16
UNIPROTKB|F1NZ81	433	ACADSB "Uncharacterized protei	0.439	0.219	0.406	3.8e-17
WB|WBGene00020419	319	acdh-4 [Caenorhabditis elegans	0.398	0.269	0.465	4.2e-17
UNIPROTKB|F1PP63	432	ACADSB "Uncharacterized protei	0.347	0.173	0.52	2.3e-15

ZFIN|ZDB-GENE-070410-109 acadsb "acyl-CoA dehydrogenase, short/branched chain" [Danio rerio (taxid:7955)]

 Score = 229 (85.7 bits), Expect = 5.0e-21, Sum P(2) = 5.0e-21
 Identities = 43/72 (59%), Positives = 60/72 (83%)

Query:     4 LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
             L+G+EI  EYGG G SF + +L++EE+A+VD SV++L DIQNTL+N L+++LGT  QKEK
Sbjct:    90 LMGMEIGSEYGGSGCSFFSSVLVIEELAKVDASVAVLCDIQNTLINTLMMQLGTHTQKEK 149

Query:    64 YLPRLAQTDLMG 75
             YLPRLA +D++G
Sbjct:   150 YLPRLA-SDMVG 160

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=IEA

WB|WBGene00019433 acdh-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 249 (92.7 bits), Expect = 7.4e-21, P = 7.4e-21
 Identities = 64/185 (34%), Positives = 97/185 (52%)

Query:    28 EEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGL 87
             EE + V       V++   LV ++  K   ++  +  +    +  LMG+EIP++YGGPG 
Sbjct:    43 EESSIVGTVRRFAVNVIKPLVREMDDK---SQMHQSVITGTFENGLMGIEIPEKYGGPGS 99

Query:    88 SFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVSRTSR 147
             SF   +L++EE+A+VDPSVS+ VD+QNTLV  LII+LGT EQK+KYLP++    +   + 
Sbjct:   100 SFFDAVLVIEELAKVDPSVSVFVDVQNTLVAPLIIQLGTEEQKQKYLPKIVTEAIGSFAL 159

Query:   148 GYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQNLSSDM 207
                     AF  +T +    D    + SG        K W+ + G +   L F N  S  
Sbjct:   160 SETGSGSDAFALKTTAKKDGDDF--VISGS-------KMWITNAGHAQFFLVFANADSAK 210

Query:   208 HMTGL 212
                G+
Sbjct:   211 GYKGI 215

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|G4NFW7 MGG_08690 "Short-chain specific acyl-CoA dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 240 (89.5 bits), Expect = 9.7e-20, P = 9.7e-20
 Identities = 69/204 (33%), Positives = 105/204 (51%)

Query:    16 PGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLII-KLGTTEQKEKYLPRLAQT--- 71
             P   F    L    I  +  + + + +  +   ND+++ K+   ++ E   P L +    
Sbjct:    50 PARRFDLHDLTPTPITHLSETEAAMQEAVSKFANDVVLPKVRDMDEAETMDPSLVEQLFE 109

Query:    72 -DLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQK 130
               LMGVEIP+EYGG G++F + I+ +EE+ARVDPSVS+LVD+ NTLVN  IIK G+ E K
Sbjct:   110 QGLMGVEIPEEYGGAGMNFTSAIVGIEELARVDPSVSVLVDVHNTLVNTAIIKWGSAELK 169

Query:   131 EKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVS 190
             +++LPRLA   V     G   L      G +D+  L    +  S G     G  K W+ +
Sbjct:   170 KRFLPRLATETV-----GSFCLS-EPVSG-SDAFALATKATETSDG-FKISGS-KMWITN 220

Query:   191 CGLSLQILQFQNLSSDMHMTGLAS 214
                +   + F NL+ D    G+ +
Sbjct:   221 SMEADFFIVFANLNPDKGYKGITA 244

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5EAD4 ACADSB "Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 216 (81.1 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
 Identities = 45/97 (46%), Positives = 63/97 (64%)

Query:    48 VNDLIIKLGTTEQKEK-YLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSV 106
             V   + K+    + EK  +  L Q  LMG+EI  +YGG G SF + +L++EE+A+VD SV
Sbjct:    76 VAPFVSKMDEDSKMEKSVIQGLFQQGLMGIEIDTKYGGTGASFFSSVLVIEELAKVDASV 135

Query:   107 SILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVS 143
             +++ DIQNTL+N +I K GT EQK  YLP+LA    S
Sbjct:   136 ALVCDIQNTLINRMIGKYGTEEQKATYLPKLATEKAS 172

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|B4DQ51 ACADSB "cDNA FLJ57418, highly similar to Short/branched chain specific acyl-CoAdehydrogenase, mitochondrial (EC 1.3.99.-)" [Homo sapiens (taxid:9606)]

 Score = 202 (76.2 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
 Identities = 41/85 (48%), Positives = 58/85 (68%)

Query:     5 LGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKY 64
             +G+E+  EYGG G SF++ +L++EE+A+VD SV++  +IQNTL+N LI K GT EQK  Y
Sbjct:     1 MGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATY 60

Query:    65 LPRLAQTDLMGVEIPQEYGGPGLSF 89
             LP+L  T+ +G     E G    SF
Sbjct:    61 LPQLT-TEKVGSFCLSEAGAGSDSF 84

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

FB|FBgn0036824 CG3902 [Drosophila melanogaster (taxid:7227)]

 Score = 228 (85.3 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 53/125 (42%), Positives = 80/125 (64%)

Query:    16 PGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKE-KYLPRLAQTDLM 74
             P L+F+TD    E++ +   +V+ L   Q   +  L+ K+    + +   L  + +  LM
Sbjct:    32 PPLTFLTDD---EKMMK--ETVAKLAQEQ---IQPLVKKMDFEHKFDPSVLKAVFENGLM 83

Query:    75 GVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYL 134
             G+EI  E GG G +FMT+I++VEE++++DP+V+  VDI NTLVN L+IK G  EQK KYL
Sbjct:    84 GIEIDTELGGSGCNFMTNIVVVEELSKIDPAVAAFVDIHNTLVNSLMIKFGNAEQKAKYL 143

Query:   135 PRLAQ 139
             P+LAQ
Sbjct:   144 PKLAQ 148

GO:0016937 "short-branched-chain-acyl-CoA dehydrogenase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|P45954 ACADSB "Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 43/93 (46%), Positives = 61/93 (65%)

Query:    51 LIIKLGTTEQKEK-YLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSIL 109
             L+  +    + EK  +  L Q  LMG+E+  EYGG G SF++ +L++EE+A+VD SV++ 
Sbjct:    79 LVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVF 138

Query:   110 VDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDV 142
              +IQNTL+N LI K GT EQK  YLP+L    V
Sbjct:   139 CEIQNTLINTLIRKHGTEEQKATYLPQLTTEKV 171

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=TAS

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=EXP

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0009083 "branched-chain amino acid catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1NZ81 ACADSB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 197 (74.4 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
 Identities = 39/96 (40%), Positives = 63/96 (65%)

Query:    48 VNDLIIKLG-TTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSV 106
             V  L+ K+   ++ ++  +  L +  LM +E+ +EYGG G SF + IL VEE+A+VDP+V
Sbjct:    77 VAPLVQKMDENSKMEDSVIKGLFEQGLMSIELGEEYGGTGASFFSVILAVEELAKVDPTV 136

Query:   107 SILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDV 142
             +++ ++QNTL N L    GT EQK  YLPR+++  +
Sbjct:   137 ALMCELQNTLTNRLFTTYGTEEQKRTYLPRVSKDTI 172

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

WB|WBGene00020419 acdh-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 210 (79.0 bits), Expect = 4.2e-17, P = 4.2e-17
 Identities = 40/86 (46%), Positives = 58/86 (67%)

Query:    57 TTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL 116
             T+E     +    +  LMG+E+P++YGGPG +F    L++EEI++VD SV  +VD+ NTL
Sbjct:     4 TSEMTPAVINGCFENGLMGIEVPEKYGGPGATFFDAALVIEEISKVDASVGAMVDVHNTL 63

Query:   117 VNDLIIKLGTTEQKEKYLPRLAQTDV 142
                LII+LGT +QKEKYLP+   + V
Sbjct:    64 FIPLIIELGTEKQKEKYLPKCYTSSV 89

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|F1PP63 ACADSB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 200 (75.5 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 39/75 (52%), Positives = 54/75 (72%)

Query:    68 LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
             L Q  LMG+EI  +YGG G SF + IL++EE+A+VD SV+++ DIQNT++N+L+ K GT 
Sbjct:    97 LFQQGLMGIEIETKYGGTGASFFSSILVIEELAKVDASVALVCDIQNTVINNLMRKYGTE 156

Query:   128 EQKEKYLPRLAQTDV 142
             EQK  YL +L    V
Sbjct:   157 EQKATYLTKLTTEKV 171

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	216
cd01158	373	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog	5e-27
cd01158	373	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog	7e-27
pfam02771	113	pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase,	1e-25
pfam02771	113	pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase,	5e-25
cd01151	386	cd01151, GCD, Glutaryl-CoA dehydrogenase	5e-13
cd01156	376	cd01156, IVD, Isovaleryl-CoA dehydrogenase	9e-13
cd01151	386	cd01151, GCD, Glutaryl-CoA dehydrogenase	1e-12
COG1960	393	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta	3e-12
COG1960	393	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta	3e-12
cd01156	376	cd01156, IVD, Isovaleryl-CoA dehydrogenase	1e-11
PLN02526	412	PLN02526, PLN02526, acyl-coenzyme A oxidase	4e-11
PLN02526	412	PLN02526, PLN02526, acyl-coenzyme A oxidase	1e-10
cd01161	409	cd01161, VLCAD, Very long chain acyl-CoA dehydroge	3e-10
PLN02519	404	PLN02519, PLN02519, isovaleryl-CoA dehydrogenase	1e-09
PLN02519	404	PLN02519, PLN02519, isovaleryl-CoA dehydrogenase	2e-09
cd01161	409	cd01161, VLCAD, Very long chain acyl-CoA dehydroge	2e-08
PRK13026	774	PRK13026, PRK13026, acyl-CoA dehydrogenase; Review	3e-08
PRK09463	777	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	9e-08
cd01160	372	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	2e-07
PRK13026	774	PRK13026, PRK13026, acyl-CoA dehydrogenase; Review	7e-07
cd01152	380	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd	7e-07
cd01160	372	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	9e-07
cd01157	378	cd01157, MCAD, Medium chain acyl-CoA dehydrogenase	1e-06
cd01152	380	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd	2e-06
cd01157	378	cd01157, MCAD, Medium chain acyl-CoA dehydrogenase	2e-06
cd01162	375	cd01162, IBD, Isobutyryl-CoA dehydrogenase	2e-06
cd01162	375	cd01162, IBD, Isobutyryl-CoA dehydrogenase	3e-06
PRK09463	777	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	6e-06
cd01163	377	cd01163, DszC, Dibenzothiophene (DBT) desulfurizat	4e-05
cd01163	377	cd01163, DszC, Dibenzothiophene (DBT) desulfurizat	1e-04
TIGR04022	391	TIGR04022, sulfur_SfnB, sulfur acquisition oxidore	2e-04
TIGR03204	395	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase,	2e-04
TIGR03204	395	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase,	2e-04
TIGR04022	391	TIGR04022, sulfur_SfnB, sulfur acquisition oxidore	9e-04
PTZ00461	410	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;	0.001
PTZ00461	410	PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase;	0.002
cd01153	407	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena	0.002
TIGR03207	372	TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co	0.003
TIGR03207	372	TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co	0.003

>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

 Score =  105 bits (265), Expect = 5e-27
 Identities = 37/75 (49%), Positives = 54/75 (72%)

Query: 67  RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
            +A+  LMG+ IP+EYGG GL F+   + +EE+A+VD SV+++V + N+L  + IIK GT
Sbjct: 38  EMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGT 97

Query: 127 TEQKEKYLPRLAQTD 141
            EQK+KYLP LA  +
Sbjct: 98  EEQKKKYLPPLATGE 112

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373

>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

 Score =  105 bits (263), Expect = 7e-27
 Identities = 36/72 (50%), Positives = 53/72 (73%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           L+G+ IP+EYGG GL F+   + +EE+A+VD SV+++V + N+L  + IIK GT EQK+K
Sbjct: 44  LMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKK 103

Query: 64  YLPRLAQTDLMG 75
           YLP LA  + +G
Sbjct: 104 YLPPLATGEKIG 115

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers. Length = 373

>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain

 Score = 96.0 bits (240), Expect = 1e-25
 Identities = 34/74 (45%), Positives = 51/74 (68%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
             +L +  L+G+ IP+EYGG GL ++   L+ EE+AR D SV + + + ++LV   I++ 
Sbjct: 37  WRKLGELGLLGLTIPEEYGGAGLDYLEYALVAEELARADASVGLALSVHSSLVAPPILRF 96

Query: 125 GTTEQKEKYLPRLA 138
           GT EQKEKYLP+LA
Sbjct: 97  GTEEQKEKYLPKLA 110

The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain. Length = 113

>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain

 Score = 94.1 bits (235), Expect = 5e-25
 Identities = 34/66 (51%), Positives = 48/66 (72%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LLG+ IP+EYGG GL ++   L+ EE+AR D SV + + + ++LV   I++ GT EQKEK
Sbjct: 45  LLGLTIPEEYGGAGLDYLEYALVAEELARADASVGLALSVHSSLVAPPILRFGTEEQKEK 104

Query: 64  YLPRLA 69
           YLP+LA
Sbjct: 105 YLPKLA 110

The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain. Length = 113

>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase

 Score = 66.6 bits (163), Expect = 5e-13
 Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LLG    + YG  GLS +   LI  E+ RVD      + +Q++LV   I   G+ EQK+K
Sbjct: 58  LLGA-TIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQK 116

Query: 64  YLPRLAQTDLMG 75
           YLP+LA  +L+G
Sbjct: 117 YLPKLASGELIG 128

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386

>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase

 Score = 65.9 bits (161), Expect = 9e-13
 Identities = 28/72 (38%), Positives = 46/72 (63%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LLG+  P+EYGG G+ ++  ++I+EEI+R   SV++     + L  + I + G+  QKEK
Sbjct: 47  LLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEK 106

Query: 64  YLPRLAQTDLMG 75
           YLP+L   + +G
Sbjct: 107 YLPKLISGEHIG 118

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376

>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 63  KYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLII 122
           K +  + +  L+G    + YG  GLS +   LI  E+ RVD      + +Q++LV   I 
Sbjct: 48  KIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIY 106

Query: 123 KLGTTEQKEKYLPRLAQ 139
             G+ EQK+KYLP+LA 
Sbjct: 107 DFGSEEQKQKYLPKLAS 123

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386

>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 3/76 (3%)

Query: 67  RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDL---IIK 123
            LA+  L+G+ IP+EYGG GLS +    ++EE+AR D   ++ + + +  +  L   I++
Sbjct: 47  ALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILR 106

Query: 124 LGTTEQKEKYLPRLAQ 139
            GT EQK +YLPRLA 
Sbjct: 107 FGTEEQKRRYLPRLAS 122

Length = 393

>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDL---IIKLGTTEQ 60
           LLG+ IP+EYGG GLS +    ++EE+AR D   ++ + + +  +  L   I++ GT EQ
Sbjct: 53  LLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQ 112

Query: 61  KEKYLPRLAQTDLMG 75
           K +YLPRLA  +L+G
Sbjct: 113 KRRYLPRLASGELIG 127

Length = 393

>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 61  KEKYLPR-----LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT 115
           ++   PR     + +  L+G+  P+EYGG G+ ++  ++I+EEI+R   SV++     + 
Sbjct: 30  RDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVALSYGAHSN 89

Query: 116 LVNDLIIKLGTTEQKEKYLPRLA 138
           L  + I + G+  QKEKYLP+L 
Sbjct: 90  LCINQIYRNGSAAQKEKYLPKLI 112

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates. Length = 376

>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase

 Score = 61.4 bits (149), Expect = 4e-11
 Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 9/124 (7%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
           +P+L    + G  I + YG PGLS     +   E+ARVD S S  + + ++L    I   
Sbjct: 66  IPKLGSLGIAGGTI-KGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALC 124

Query: 125 GTTEQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQL 184
           G+  QK+KYLP LAQ D    +    AL     YG +D+  LN   + +  G +  +GQ 
Sbjct: 125 GSEAQKQKYLPSLAQLD----TVACWALT-EPDYG-SDASSLNTTATKVEGGWI-LNGQ- 176

Query: 185 KRWM 188
           KRW+
Sbjct: 177 KRWI 180

Length = 412

>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 26/63 (41%), Positives = 35/63 (55%)

Query: 13  YGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 72
           YG PGLS     +   E+ARVD S S  + + ++L    I   G+  QK+KYLP LAQ D
Sbjct: 82  YGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLD 141

Query: 73  LMG 75
            + 
Sbjct: 142 TVA 144

Length = 412

>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase

 Score = 58.2 bits (141), Expect = 3e-10
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 33  VDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTD 92
           V P      ++ +   ND + K+       K L +L +  L G+++P+EYGG GL+  T 
Sbjct: 35  VGPVEKFFEEVNDPAKNDQLEKI-----PRKTLTQLKELGLFGLQVPEEYGGLGLN-NTQ 88

Query: 93  ILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138
              + EI  +D   S+ +    ++    I+  GT  QKEKYLP+LA
Sbjct: 89  YARLAEIVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLA 134

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409

>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           L G+  P+EYGG GL ++   + +EEI+R   SV +     + L  + +++ GT  QKEK
Sbjct: 73  LHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEK 132

Query: 64  YLPRL 68
           YLP+L
Sbjct: 133 YLPKL 137

Length = 404

>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 26/66 (39%), Positives = 41/66 (62%)

Query: 72  DLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKE 131
           +L G+  P+EYGG GL ++   + +EEI+R   SV +     + L  + +++ GT  QKE
Sbjct: 72  NLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKE 131

Query: 132 KYLPRL 137
           KYLP+L
Sbjct: 132 KYLPKL 137

Length = 404

>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           L G+++P+EYGG GL+  T    + EI  +D   S+ +    ++    I+  GT  QKEK
Sbjct: 70  LFGLQVPEEYGGLGLN-NTQYARLAEIVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEK 128

Query: 64  YLPRLA 69
           YLP+LA
Sbjct: 129 YLPKLA 134

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409

>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 5   LGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL-VNDLIIKLGTTEQKEK 63
             + IP+EYGG G S   +  IV +IA    S ++ V + N+L   +L+   GT EQK+ 
Sbjct: 123 FALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDY 182

Query: 64  YLPRLAQTDLMGVEIP 79
           +LPRLA     G EIP
Sbjct: 183 WLPRLAD----GTEIP 194

Length = 774

>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed

 Score = 51.4 bits (124), Expect = 9e-08
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 5/76 (6%)

Query: 5   LGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL-VNDLIIKLGTTEQKEK 63
            G+ IP+EYGG   S      +++++A    ++++ V + N+L   +L++  GT EQK+ 
Sbjct: 124 FGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDH 183

Query: 64  YLPRLAQTDLMGVEIP 79
           YLPRLA+    G EIP
Sbjct: 184 YLPRLAR----GEEIP 195

Length = 777

>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LLGV  P+EYGG G   ++  ++ EE+AR        + +   +V+  I + G+ EQKE+
Sbjct: 44  LLGVGFPEEYGGIGGDLLSAAVLWEELARAG-GSGPGLSLHTDIVSPYITRAGSPEQKER 102

Query: 64  YLPRLAQTDLMGVEIPQEYGG 84
            LP++     +G     E G 
Sbjct: 103 VLPQMVAGKKIGAIAMTEPGA 123

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372

>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 78  IPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL-VNDLIIKLGTTEQKEKYLPR 136
           IP+EYGG G S   +  IV +IA    S ++ V + N+L   +L+   GT EQK+ +LPR
Sbjct: 127 IPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPR 186

Query: 137 LA 138
           LA
Sbjct: 187 LA 188

Length = 774

>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 56  GTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT 115
              E + ++   LA         P+EYGG G S M  ++  EE+A     V       + 
Sbjct: 32  EGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAPVPFNQIGIDL 91

Query: 116 LVNDLIIKLGTTEQKEKYLPRLA 138
                I+  GT EQK ++LP + 
Sbjct: 92  AGP-TILAYGTDEQKRRFLPPIL 113

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 380

>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase

 Score = 48.3 bits (115), Expect = 9e-07
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 6/84 (7%)

Query: 60  QKEKYLPR-----LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQN 114
           +K   +PR       +  L+GV  P+EYGG G   ++  ++ EE+AR        + +  
Sbjct: 26  EKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAG-GSGPGLSLHT 84

Query: 115 TLVNDLIIKLGTTEQKEKYLPRLA 138
            +V+  I + G+ EQKE+ LP++ 
Sbjct: 85  DIVSPYITRAGSPEQKERVLPQMV 108

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer. Length = 372

>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           L+   IP++ GG GL      LI EE+A     V   ++  N+L    +I  G  EQK+K
Sbjct: 46  LMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQTAIE-ANSLGQMPVIISGNDEQKKK 104

Query: 64  YLPRLAQTDLM 74
           YL R+ +  LM
Sbjct: 105 YLGRMTEEPLM 115

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378

>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
                 P+EYGG G S M  ++  EE+A     V       +      I+  GT EQK +
Sbjct: 49  WAAPGWPKEYGGRGASLMEQLIFREEMAAAGAPVPFNQIGIDLAGP-TILAYGTDEQKRR 107

Query: 64  YLPRLAQTDLM 74
           +LP +   + +
Sbjct: 108 FLPPILSGEEI 118

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 380

>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 73  LMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 132
           LM   IP++ GG GL      LI EE+A     V   ++  N+L    +I  G  EQK+K
Sbjct: 46  LMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQTAIE-ANSLGQMPVIISGNDEQKKK 104

Query: 133 YLPRLAQ 139
           YL R+ +
Sbjct: 105 YLGRMTE 111

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer. Length = 378

>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 69  AQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTE 128
           A+    G+ I  + GG GLS +   +I E ++    S +  + I N +   +I   G  E
Sbjct: 42  AELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTAAYISIHN-MCAWMIDSFGNDE 100

Query: 129 QKEKYLPRLAQTDV 142
           Q+E++LP L   + 
Sbjct: 101 QRERFLPDLCTMEK 114

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375

>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
             G+ I  + GG GLS +   +I E ++    S +  + I N +   +I   G  EQ+E+
Sbjct: 46  FGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTAAYISIHN-MCAWMIDSFGNDEQRER 104

Query: 64  YLPRLAQTDLMG 75
           +LP L   + + 
Sbjct: 105 FLPDLCTMEKLA 116

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer. Length = 375

>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 78  IPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL-VNDLIIKLGTTEQKEKYLPR 136
           IP+EYGG   S      +++++A    ++++ V + N+L   +L++  GT EQK+ YLPR
Sbjct: 128 IPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPR 187

Query: 137 LAQ 139
           LA+
Sbjct: 188 LAR 190

Length = 777

>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           L  + +P+EYGG G S      +V E+A  D +++  +      V  L++  G  + +++
Sbjct: 36  LGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFGFVEALLL-AGPEQFRKR 94

Query: 64  YLPRLAQTDLMG 75
           +  R+    + G
Sbjct: 95  WFGRVLNGWIFG 106

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup. Length = 377

>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 67  RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
            L Q+ L  + +P+EYGG G S      +V E+A  D +++  +      V  L++  G 
Sbjct: 30  LLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFGFVEALLL-AGP 88

Query: 127 TEQKEKYLPRLAQ 139
            + ++++  R+  
Sbjct: 89  EQFRKRWFGRVLN 101

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup. Length = 377

>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 62  EKYLP-----RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL 116
           E+ LP       +Q+ L G+ +P+ YGG G+S+ T   ++  I+  DPS+  +   QN  
Sbjct: 31  ERRLPWAELDAFSQSGLWGITVPRAYGGAGVSYATLAEVIAIISAADPSLGQIP--QNHF 88

Query: 117 -VNDLIIKLGTTEQKEKY 133
              +++   G+ EQK  +
Sbjct: 89  YALEVLRLTGSEEQKRFF 106

Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family [Central intermediary metabolism, Sulfur metabolism]. Length = 391

>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 10  PQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 69
           P++YGG G + +   +  EE+        +   +  ++V  +I   G  EQK+++LPR+A
Sbjct: 60  PKQYGGTGWTSVQHYIFNEELQSAPAPQPLAFGV--SMVGPVIYTFGNEEQKKRFLPRIA 117

Query: 70  QTD 72
             D
Sbjct: 118 NVD 120

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 395

>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 79  PQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA 138
           P++YGG G + +   +  EE+        +   +  ++V  +I   G  EQK+++LPR+A
Sbjct: 60  PKQYGGTGWTSVQHYIFNEELQSAPAPQPLAFGV--SMVGPVIYTFGNEEQKKRFLPRIA 117

Query: 139 QTD 141
             D
Sbjct: 118 NVD 120

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris. Length = 395

>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL-VNDLIIKLGTTEQKE 62
           L G+ +P+ YGG G+S+ T   ++  I+  DPS+  +   QN     +++   G+ EQK 
Sbjct: 47  LWGITVPRAYGGAGVSYATLAEVIAIISAADPSLGQIP--QNHFYALEVLRLTGSEEQKR 104

Query: 63  KY 64
            +
Sbjct: 105 FF 106

Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family [Central intermediary metabolism, Sulfur metabolism]. Length = 391

>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 16/73 (21%), Positives = 36/73 (49%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
             +L    +MGV +P+  GG G+  +  ++I  E+++ DP   +     + L  +     
Sbjct: 74  FKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYS 133

Query: 125 GTTEQKEKYLPRL 137
            +  Q+ ++LP++
Sbjct: 134 ASPAQRARWLPKV 146

Length = 410

>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           ++GV +P+  GG G+  +  ++I  E+++ DP   +     + L  +      +  Q+ +
Sbjct: 82  VMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRAR 141

Query: 64  YLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVD 103
           +LP++   + +G     E   PG    TD+L +   A+ D
Sbjct: 142 WLPKVLTGEHVGAMGMSE---PGAG--TDVLGMRTTAKKD 176

Length = 410

>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 73  LMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 132
            M + +P+EYGG GL       + E  +R D  +      Q       ++  GT  Q+EK
Sbjct: 50  WMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQGAA--ATLLAHGTEAQREK 107

Query: 133 YLPRLA 138
           ++PRLA
Sbjct: 108 WIPRLA 113

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position. Length = 407

>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
            +G E+P+E+GG G+  +   +I E+IAR D S+S  V++  +L   ++ +    E  + 
Sbjct: 46  FIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS-YVNLLASLNGQILAQHARPEIAKP 104

Query: 64  YLPRL 68
           +L +L
Sbjct: 105 WLGQL 109

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372

>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 58  TEQKEKYLPR-LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTL 116
           T   ++ L R + +   +G E+P+E+GG G+  +   +I E+IAR D S+S  V++  +L
Sbjct: 30  TRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMS-YVNLLASL 88

Query: 117 VNDLIIKLGTTEQKEKYLPRL 137
              ++ +    E  + +L +L
Sbjct: 89  NGQILAQHARPEIAKPWLGQL 109

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase. Length = 372

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG0139|consensus	398		99.97
KOG0140|consensus	408		99.97
KOG0141|consensus	421		99.96
TIGR03203	378	pimD_small pimeloyl-CoA dehydrogenase, small subun	99.9
TIGR03204	395	pimC_large pimeloyl-CoA dehydrogenase, large subun	99.87
PRK13026	774	acyl-CoA dehydrogenase; Reviewed	99.85
PRK09463	777	fadE acyl-CoA dehydrogenase; Reviewed	99.84
TIGR03207	372	cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen	99.83
cd01156	376	IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d	99.82
cd01157	378	MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar	99.82
PRK03354	380	crotonobetainyl-CoA dehydrogenase; Validated	99.81
PTZ00461	410	isovaleryl-CoA dehydrogenase; Provisional	99.81
PLN02519	404	isovaleryl-CoA dehydrogenase	99.81
PTZ00457	520	acyl-CoA dehydrogenase; Provisional	99.81
cd01151	386	GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd	99.8
cd01161	409	VLCAD Very long chain acyl-CoA dehydrogenase. VLCA	99.8
cd01152	380	ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases	99.79
PTZ00456	622	acyl-CoA dehydrogenase; Provisional	99.79
cd01155	394	ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE	99.79
KOG0137|consensus	634		99.78
cd01162	375	IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d	99.78
cd01160	372	LCAD Long chain acyl-CoA dehydrogenase. LCAD is an	99.78
PRK12341	381	putative acyl-CoA dehydrogenase; Provisional	99.78
COG1960	393	CaiA Acyl-CoA dehydrogenases [Lipid metabolism]	99.77
PLN02876	822	acyl-CoA dehydrogenase	99.75
PLN02526	412	acyl-coenzyme A oxidase	99.75
cd01158	373	SCAD_SBCAD Short chain acyl-CoA dehydrogenases and	99.72
cd01153	407	ACAD_fadE5 Putative acyl-CoA dehydrogenases simila	99.71
KOG0138|consensus	432		99.69
KOG0139|consensus	398		99.68
cd01163	377	DszC Dibenzothiophene (DBT) desulfurization enzyme	99.67
KOG0141|consensus	421		99.65
cd01154	418	AidB Proteins involved in DNA damage response, sim	99.65
PRK11561	538	isovaleryl CoA dehydrogenase; Provisional	99.63
KOG0140|consensus	408		99.59
PLN02636	686	acyl-coenzyme A oxidase	99.54
PLN02312	680	acyl-CoA oxidase	99.5
KOG1469|consensus	392		99.38
PF02771	113	Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal	99.36
cd01159	370	NcnH Naphthocyclinone hydroxylase. Naphthocyclinon	99.31
cd01151	386	GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd	99.3
PRK09463	777	fadE acyl-CoA dehydrogenase; Reviewed	99.25
TIGR03203	378	pimD_small pimeloyl-CoA dehydrogenase, small subun	99.25
PLN02519	404	isovaleryl-CoA dehydrogenase	99.25
PRK13026	774	acyl-CoA dehydrogenase; Reviewed	99.24
TIGR03204	395	pimC_large pimeloyl-CoA dehydrogenase, large subun	99.23
cd01156	376	IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d	99.23
TIGR03207	372	cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen	99.23
PRK03354	380	crotonobetainyl-CoA dehydrogenase; Validated	99.22
cd01157	378	MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar	99.2
cd01152	380	ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases	99.2
cd01162	375	IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d	99.19
cd01155	394	ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE	99.19
cd01160	372	LCAD Long chain acyl-CoA dehydrogenase. LCAD is an	99.19
PTZ00461	410	isovaleryl-CoA dehydrogenase; Provisional	99.18
cd01163	377	DszC Dibenzothiophene (DBT) desulfurization enzyme	99.18
PRK12341	381	putative acyl-CoA dehydrogenase; Provisional	99.17
cd01150	610	AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl	99.16
KOG0138|consensus	432		99.16
PLN02526	412	acyl-coenzyme A oxidase	99.14
cd01161	409	VLCAD Very long chain acyl-CoA dehydrogenase. VLCA	99.09
cd01158	373	SCAD_SBCAD Short chain acyl-CoA dehydrogenases and	99.09
COG1960	393	CaiA Acyl-CoA dehydrogenases [Lipid metabolism]	99.03
PTZ00456	622	acyl-CoA dehydrogenase; Provisional	99.02
PTZ00457	520	acyl-CoA dehydrogenase; Provisional	99.02
KOG0137|consensus	634		99.0
cd01153	407	ACAD_fadE5 Putative acyl-CoA dehydrogenases simila	99.0
PTZ00460	646	acyl-CoA dehydrogenase; Provisional	98.94
cd01159	370	NcnH Naphthocyclinone hydroxylase. Naphthocyclinon	98.86
PLN02876	822	acyl-CoA dehydrogenase	98.83
PF02771	113	Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal	98.64
cd00567	327	ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac	98.57
PLN02636	686	acyl-coenzyme A oxidase	98.54
KOG1469|consensus	392		98.54
PLN02312	680	acyl-CoA oxidase	98.38
cd01154	418	AidB Proteins involved in DNA damage response, sim	98.37
PLN02443	664	acyl-coenzyme A oxidase	98.34
PF02770	52	Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma	97.47
PRK11561	538	isovaleryl CoA dehydrogenase; Provisional	97.43
cd01150	610	AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl	97.39
PTZ00460	646	acyl-CoA dehydrogenase; Provisional	96.56
cd00567	327	ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac	96.47
PLN02443	664	acyl-coenzyme A oxidase	96.23
PF00441	150	Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal	94.83
PF14749	125	Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal;	90.54

>KOG0139|consensus

Probab=99.97  E-value=1.3e-33  Score=213.74  Aligned_cols=199  Identities=33%  Similarity=0.490  Sum_probs=168.1

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCceeeecCCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQE   81 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~e~   81 (216)
                      +|++++.+|++|||.|.++...+++.||+++.+++++..+.+++.+..++|..||+++||+.++|.+...-.-+++++||
T Consensus        80 ~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~~~d~vgsfAlSEp  159 (398)
T KOG0139|consen   80 LGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKLTGDLVGSFALSEP  159 (398)
T ss_pred             cCcceeecChhhCCCchhHHHHHHHHHHHhccCccceeEEEecccccchHHHHhCcHHHHhhhcchhhccccceeeecCC
Confidence            69999999999999999999999999999999999999888888899999999999999998888876444457899999


Q ss_pred             CCCCCccHHH-------------------------HHHHHHHHHhhCCC------ceeEeeechh--hhHHHHHhcCCH-
Q psy5139          82 YGGPGLSFMT-------------------------DILIVEEIARVDPS------VSILVDIQNT--LVNDLIIKLGTT-  127 (216)
Q Consensus        82 ~gG~~~~~~~-------------------------~~~v~e~lar~~~~------~~~~v~~~~~--~~~~~~~~~g~~-  127 (216)
                      ..|||.....                         ++.++  ++.+|++      +.|+|+.+..  ....+..++|.+ 
T Consensus       160 gaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~~~lV--fan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRa  237 (398)
T KOG0139|consen  160 GAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEADWFLV--FANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRA  237 (398)
T ss_pred             CCCcchHHhhhhHhhcCCeEEEecceeeecCCcccceEEE--EEecChhhccCceeEEEeeCCCCCcccCCccccccccc
Confidence            9999985322                         23333  5544443      3488887653  445667888887 


Q ss_pred             -HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeecc---------cc
Q psy5139         128 -EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCG---------LS  194 (216)
Q Consensus       128 -~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~~---------fg  194 (216)
                       ..+..+|+++   .++.+|++|.|++.....++.+|          +.+++..+|.    +|.+++.+         ||
T Consensus       238 SsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gR----------Igi~Aqmlgl----aQ~c~d~tI~Y~q~R~~FG  303 (398)
T KOG0139|consen  238 SSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGR----------IGIGAQMLGL----AQGCFDETIPYAQERLQFG  303 (398)
T ss_pred             cceeeEEeccccccchhhcccCCcchHHHHHhcCccc----------eeehhhhhhh----hHhHHHhhhHHHHHHHHhc
Confidence             4466788886   57899999999999999988888          9999999999    88888765         99


Q ss_pred             ceeeeeeccc---ccccccccccCC
Q psy5139         195 LQILQFQNLS---SDMHMTGLASRF  216 (216)
Q Consensus       195 ~~i~~~Q~v~---ad~~~~~~~~r~  216 (216)
                      ++|.+||.+|   |||.+++|++|+
T Consensus       304 k~l~d~Q~iQhqiA~~~teiEaaRl  328 (398)
T KOG0139|consen  304 KRLLDFQGLQHQIADMATEIEAARL  328 (398)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999   999999999995

>KOG0140|consensus

Probab=99.97  E-value=1.7e-32  Score=204.90  Aligned_cols=198  Identities=23%  Similarity=0.336  Sum_probs=167.9

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +|+.+..+|++|||.|++.++.+++.|++++.|.++...+..|. ++..++..+|+++||+++++++++..++ ++|++|
T Consensus        71 lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCtg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTE  149 (408)
T KOG0140|consen   71 LGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCTGIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTE  149 (408)
T ss_pred             cccCcccCccccCCCCchhHHHHHHHHHHHccchhHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccC
Confidence            69999999999999999999999999999999998877666554 7888899999999999999999999987 589999


Q ss_pred             CCCCCCccHHH-------------------------HHHHHHHHHhhCCC---------ceeEeeechh--hhHHHHHhc
Q psy5139          81 EYGGPGLSFMT-------------------------DILIVEEIARVDPS---------VSILVDIQNT--LVNDLIIKL  124 (216)
Q Consensus        81 ~~gG~~~~~~~-------------------------~~~v~e~lar~~~~---------~~~~v~~~~~--~~~~~~~~~  124 (216)
                      |..|||+..+.                         .+.++  ++|+|+.         ++|.|+.+++  .......++
T Consensus       150 PgAGSDvagikTka~KkGDeYiiNGsKawItg~G~anwyfV--laRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nm  227 (408)
T KOG0140|consen  150 PGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHANWYFV--LARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNM  227 (408)
T ss_pred             CCCCcchhhhhhhhhhcCCEEEEcCceeeeecCCccceEEE--EEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcc
Confidence            99999986332                         44555  8998873         3477877654  344566788


Q ss_pred             CCHHHhhh--hchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeecc-------
Q psy5139         125 GTTEQKEK--YLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCG-------  192 (216)
Q Consensus       125 g~~~~~~~--~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~~-------  192 (216)
                      |.+.+.++  .|+++   .+|.||.++.||++.+..++.+|          ..|++.++|.    ++++++++       
T Consensus       228 Gqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~fd~tR----------p~vAa~alG~----A~r~ld~a~ky~~eR  293 (408)
T KOG0140|consen  228 GQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGGFDKTR----------PNVAAGALGL----AQRCLDEATKYALER  293 (408)
T ss_pred             cccCCCCceeeeeecccchhccccCCCccceehhhhccCCC----------CchhhhhhHH----HHHHHHHHHHHHHHH
Confidence            88866554  56664   68999999999999888877777          9999999999    88888654       


Q ss_pred             --ccceeeeeeccc---ccccccccccCC
Q psy5139         193 --LSLQILQFQNLS---SDMHMTGLASRF  216 (216)
Q Consensus       193 --fg~~i~~~Q~v~---ad~~~~~~~~r~  216 (216)
                        ||+||++||+||   |||++.+|.+||
T Consensus       294 K~FG~~iA~hQ~vqF~LAdMA~~le~aRL  322 (408)
T KOG0140|consen  294 KAFGTPIANHQAVQFMLADMAINLELARL  322 (408)
T ss_pred             HHhCcChhhhhhHHHHHHHHHHHHHHHHH
Confidence              999999999999   999999999986

>KOG0141|consensus

Probab=99.96  E-value=2.4e-32  Score=204.27  Aligned_cols=198  Identities=27%  Similarity=0.405  Sum_probs=170.9

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .|++|++.|++|||.|++....+++.||++|+...+++.++.|+.++...|.+.|+++|+++|+|++.+|+.+ +++++|
T Consensus        86 ~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsE  165 (421)
T KOG0141|consen   86 QGLLGITAPEEYGGSGGGYLSHCIVMEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSE  165 (421)
T ss_pred             cCcccccchhhhCCCchhHHHHHHHHHHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecC
Confidence            5899999999999999999999999999999998888888888889999999999999999999999999987 689999


Q ss_pred             CCCCCCccH-------------------------HHHHHHHHHHHhhCCC--------ceeEeeechh--hhHHHHHhcC
Q psy5139          81 EYGGPGLSF-------------------------MTDILIVEEIARVDPS--------VSILVDIQNT--LVNDLIIKLG  125 (216)
Q Consensus        81 ~~gG~~~~~-------------------------~~~~~v~e~lar~~~~--------~~~~v~~~~~--~~~~~~~~~g  125 (216)
                      |..|||+-.                         ..+++|+  .|.++.+        ++|+|+....  .....+.++|
T Consensus       166 p~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~advliV--yAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlG  243 (421)
T KOG0141|consen  166 PGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPDADVLIV--YAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLG  243 (421)
T ss_pred             CCCCCccceeeeeceecCCcEEecCcEEEEecCCCCcEEEE--EEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhc
Confidence            999999742                         2255565  7777654        3488876542  5567788888


Q ss_pred             CH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeecc--------
Q psy5139         126 TT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCG--------  192 (216)
Q Consensus       126 ~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~~--------  192 (216)
                      .+  ..++.+|++.   +++++|+++.|+-.++.-+..+|          +.++++.+|.    ++++++.+        
T Consensus       244 mrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgLd~ER----------Lvla~gplgl----mqa~~d~~~~Y~~qR~  309 (421)
T KOG0141|consen  244 MRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGLDLER----------LVLAAGPLGL----MQAALDETFPYAHQRK  309 (421)
T ss_pred             CCCCcchheehhhccCcHHHhcCcCCceEEEEecCCChhH----------hhhccCchHH----HHHHHHHhhhHHHHHH
Confidence            87  4567788874   67899999999999999999999          9999999999    88888765        


Q ss_pred             -ccceeeeeeccc---ccccccccccC
Q psy5139         193 -LSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       193 -fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                       ||++|++||.+|   |||++.+-++|
T Consensus       310 afgk~ig~fQ~~QgklAdmyT~l~a~R  336 (421)
T KOG0141|consen  310 AFGKKIGHFQLLQGKLADMYTTLCASR  336 (421)
T ss_pred             HhCCchhHHHHHHhHHHHHHHHHHHHH
Confidence             999999999999   99999988776

>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit

Probab=99.90  E-value=2.5e-26  Score=185.83  Aligned_cols=196  Identities=17%  Similarity=0.217  Sum_probs=148.0

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +||+++.+|++|||.|++..+.+++.||+++.+.+.+. +.. ..+....+..+|+++|+++|++++.+|+.+ +++++|
T Consensus        49 ~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~~~~~~-~~~-~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tE  126 (378)
T TIGR03203        49 QGLLGLPFSEADGGFGAGSVETMIVMEALGKALVLEPY-LAT-VVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLE  126 (378)
T ss_pred             CCCcccccchhcCCCCCCHHHHHHHHHHHhCcccchHH-HHH-HHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecC
Confidence            69999999999999999999999999999998766553 222 224455788899999999999999999864 789999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC------Cce-eEeeechh-hhHHHH-HhcCC
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP------SVS-ILVDIQNT-LVNDLI-IKLGT  126 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~------~~~-~~v~~~~~-~~~~~~-~~~g~  126 (216)
                      |.+|+|...+                         .+.+++  ++|+++      +++ |+|+.+.+ +..... .+.|.
T Consensus       127 p~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~Ad~~lv--~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~  204 (378)
T TIGR03203       127 KNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETADTLIV--TARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL  204 (378)
T ss_pred             CCCCCCcccceEEEEEcCCEEEEEeEEEEecCCccCCEEEE--EEecCCCCCCCCceEEEEEECCCCCceeccccccCCC
Confidence            9988875321                         133444  566531      233 77876543 222222 22343


Q ss_pred             HHHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------ccc
Q psy5139         127 TEQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLS  194 (216)
Q Consensus       127 ~~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg  194 (216)
                       ...+.+|+++   .++++|.++.|++.+...++..|          ..+++..+|.    ++++++.         +||
T Consensus       205 -~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~qFG  269 (378)
T TIGR03203       205 -HAADITFTGVVVGADAAIGDPENALPLIERVVDDAR----------AALCAEAVGL----MDESLKTTVEYIKTRKQFG  269 (378)
T ss_pred             -ceeeEEECCCcccHHhhcCCcchHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhcCeecC
Confidence             3456788775   46788988999998888888888          9999999999    6666643         499


Q ss_pred             ceeeeeeccc---ccccccccccCC
Q psy5139         195 LQILQFQNLS---SDMHMTGLASRF  216 (216)
Q Consensus       195 ~~i~~~Q~v~---ad~~~~~~~~r~  216 (216)
                      |||++||+||   |||++++|++|+
T Consensus       270 ~pi~~~Q~vq~~lAdm~~~~e~ar~  294 (378)
T TIGR03203       270 VPIGSFQVLQHRAADMFVAVEQARS  294 (378)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999   999999998873

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit

Probab=99.87  E-value=3.9e-24  Score=174.06  Aligned_cols=195  Identities=21%  Similarity=0.345  Sum_probs=142.7

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCc-eeeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDL-MGVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~-~~~~~~e   80 (216)
                      +||+++.+|++|||.|+++.+.+++.||+++.+.+.++....  .+....+..+++++|+++|++++.+|+. .+++++|
T Consensus        52 ~G~~gl~vPe~~GG~G~~~~~~~~v~eelg~~~~~~~~~~~~--~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tE  129 (395)
T TIGR03204        52 KGWGVSHWPKQYGGTGWTSVQHYIFNEELQSAPAPQPLAFGV--SMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSE  129 (395)
T ss_pred             CCCCCCCCCcccCCCCCCHHHHHHHHHHHHhcCCCccchhHh--HhhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecC
Confidence            699999999999999999999999999999999887754332  2344468889999999999999999986 4789999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC------Cce-eEeeechh-hhHHHH-HhcCC
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP------SVS-ILVDIQNT-LVNDLI-IKLGT  126 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~------~~~-~~v~~~~~-~~~~~~-~~~g~  126 (216)
                      |.+|++...+                         .+.+++  ++++++      +++ |+|+.+.+ +....+ ...+.
T Consensus       130 p~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~a~~Ad~~lv--~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~~  207 (395)
T TIGR03204       130 PGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFC--LCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDGG  207 (395)
T ss_pred             CCCCCChhhceEEEEEcCCEEEEeeEEEeecCCccCCeEEE--EEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccCC
Confidence            9988876321                         133343  555432      233 67776532 222222 22334


Q ss_pred             HHHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeee---------cccc
Q psy5139         127 TEQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVS---------CGLS  194 (216)
Q Consensus       127 ~~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~---------~~fg  194 (216)
                      ....+..|+++   .+++++.++.|++.....+...+          ..+++  +|.    ++.+++         .+||
T Consensus       208 ~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~g~aa--~g~----a~~~l~~a~~ya~~R~~fg  271 (395)
T TIGR03204       208 VEVNEVFFDDVEVPYENLVGEENKGWDYAKFLLGNER----------TGIAR--VGV----SKERIRRIKDLAAKVESGG  271 (395)
T ss_pred             CceeEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHH----------HHHHH--HHH----HHHHHHHHHHHHHHHhhcC
Confidence            45667788874   45778888889888777777776          66654  566    444443         2499


Q ss_pred             ceeeeeeccc---ccccccccccCC
Q psy5139         195 LQILQFQNLS---SDMHMTGLASRF  216 (216)
Q Consensus       195 ~~i~~~Q~v~---ad~~~~~~~~r~  216 (216)
                      +||++||+||   +||.++++++|+
T Consensus       272 ~~i~~~q~vq~~la~~~~~~~aar~  296 (395)
T TIGR03204       272 KPVIEDAKFREKLAAVEIELKALEL  296 (395)
T ss_pred             CccccCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999   999999999874

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>PRK13026 acyl-CoA dehydrogenase; Reviewed

Probab=99.85  E-value=2.8e-23  Score=177.75  Aligned_cols=201  Identities=22%  Similarity=0.264  Sum_probs=139.1

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhH-HHHHHhcCChhHHHHHHHHHHhCCce-eeecC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLV-NDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIP   79 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~   79 (216)
                      .||+++.+|++|||.|++..+...+.|++++.+.+.+..+..++.+. ...|.++|+++|+++|+|++++|+.+ +++++
T Consensus       120 ~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlT  199 (774)
T PRK13026        120 EGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALT  199 (774)
T ss_pred             CCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEec
Confidence            59999999999999999999999999999987776554444444344 35788999999999999999999965 78999


Q ss_pred             CCCCCCCccHHHHHHHH----------------------------H---HHHh-hC----------CCc-eeEeeechh-
Q psy5139          80 QEYGGPGLSFMTDILIV----------------------------E---EIAR-VD----------PSV-SILVDIQNT-  115 (216)
Q Consensus        80 e~~gG~~~~~~~~~~v~----------------------------e---~lar-~~----------~~~-~~~v~~~~~-  115 (216)
                      ||.+|||...+....++                            .   ..++ ++          .++ .|+|+.+.+ 
T Consensus       200 EP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pG  279 (774)
T PRK13026        200 GPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPG  279 (774)
T ss_pred             CCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCC
Confidence            99999986543211100                            0   0111 11          122 356665432 


Q ss_pred             hh-HHHHHhcCCH-HHhhhhchhc---cccccccc---ccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceee
Q psy5139         116 LV-NDLIIKLGTT-EQKEKYLPRL---AQTDVSRT---SRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRW  187 (216)
Q Consensus       116 ~~-~~~~~~~g~~-~~~~~~l~~~---~~~~lg~~---~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~  187 (216)
                      +. ......+|.+ .....+|+++   .+++||.+   +.|++.++..++.+|         -+.+++.++|.    ++.
T Consensus       280 V~ig~~~~~lG~~~~~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR---------~i~laA~a~G~----A~~  346 (774)
T PRK13026        280 VEIGRRHNPLGMAFMNGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGR---------GISLPALGTAS----GHM  346 (774)
T ss_pred             eEeeccccccccCcccceEEEeeeEccHHHhcCCcccCChHHHHHHHHHHHHH---------HHHHHHHHHHH----HHH
Confidence            21 1223334433 1234566665   46788865   789988877776654         03667777787    555


Q ss_pred             eee---------ccccceeeeeeccc---ccccc---cccccC
Q psy5139         188 MVS---------CGLSLQILQFQNLS---SDMHM---TGLASR  215 (216)
Q Consensus       188 ~~~---------~~fg~~i~~~Q~v~---ad~~~---~~~~~r  215 (216)
                      +++         .+||+||++||+||   |||.+   .+|++|
T Consensus       347 al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR  389 (774)
T PRK13026        347 ATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAAR  389 (774)
T ss_pred             HHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence            553         35999999999999   99998   677776

>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed

Probab=99.84  E-value=4.9e-23  Score=176.79  Aligned_cols=198  Identities=20%  Similarity=0.321  Sum_probs=137.6

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhH-HHHHHhcCChhHHHHHHHHHHhCCce-eeecC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLV-NDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIP   79 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~   79 (216)
                      .||+++.+|++|||.|++..+.+.+.|++++.+.++...+..++.++ ...|.++|+++|+++|+|++++|+.+ +++++
T Consensus       121 ~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlT  200 (777)
T PRK09463        121 HGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALT  200 (777)
T ss_pred             CCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEec
Confidence            69999999999999999999999999999998877655444444444 34688999999999999999999965 78999


Q ss_pred             CCCCCCCccHHHHH---------------------------------HHHHHHHhh-C----------CCc-eeEeeech
Q psy5139          80 QEYGGPGLSFMTDI---------------------------------LIVEEIARV-D----------PSV-SILVDIQN  114 (216)
Q Consensus        80 e~~gG~~~~~~~~~---------------------------------~v~e~lar~-~----------~~~-~~~v~~~~  114 (216)
                      ||.+|||...+.+.                                 +++  ++++ +          .++ .|+|+.+.
T Consensus       201 EP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V--~ar~~dp~~~~g~~~~~Git~fLVp~d~  278 (777)
T PRK09463        201 SPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGL--AFKLYDPDGLLGDKEDLGITCALIPTDT  278 (777)
T ss_pred             CCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEE--EEEecCcccccCCCCCCceEEEEEECCC
Confidence            99999987543211                                 111  1221 1          112 25565443


Q ss_pred             h-h-hHHHHHhcCCH-HHhhhhchhc---cccccccc---ccchhhhhhhhccccCCceeeccceeeeecCcccCCCcce
Q psy5139         115 T-L-VNDLIIKLGTT-EQKEKYLPRL---AQTDVSRT---SRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLK  185 (216)
Q Consensus       115 ~-~-~~~~~~~~g~~-~~~~~~l~~~---~~~~lg~~---~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~  185 (216)
                      + + ......++|.+ .....+|+++   .+++||.+   +.|++.++..++.+|         -+.+++.++|.    +
T Consensus       279 pGV~ig~~~~~lG~r~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR---------~i~laA~avG~----a  345 (777)
T PRK09463        279 PGVEIGRRHFPLNVPFQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGR---------GISLPSNSTGG----A  345 (777)
T ss_pred             CCeEecccccccCcccccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHH---------HHHHHHHHHHH----H
Confidence            2 1 11222233433 1223456664   46778764   789988877777654         03677888888    6


Q ss_pred             eeeeec---------cccceeeeeeccc---cccccccccc
Q psy5139         186 RWMVSC---------GLSLQILQFQNLS---SDMHMTGLAS  214 (216)
Q Consensus       186 ~~~~~~---------~fg~~i~~~Q~v~---ad~~~~~~~~  214 (216)
                      +++++.         +||+||++||+||   |||.++++++
T Consensus       346 r~al~~Av~YA~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~  386 (777)
T PRK09463        346 KLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLM  386 (777)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhhcHHHHHHHHHHHHHHHHH
Confidence            655533         4999999999999   9999986443

>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase

Probab=99.83  E-value=1.1e-22  Score=164.48  Aligned_cols=197  Identities=20%  Similarity=0.326  Sum_probs=145.2

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCc-eeeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDL-MGVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~-~~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+...+.|++++.+.++++.... ..+....+..+++++|+++|++++.+|+. .+++++|
T Consensus        44 ~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~-~~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tE  122 (372)
T TIGR03207        44 MGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMSYVNLL-ASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTE  122 (372)
T ss_pred             CCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHHHHHHh-hhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence            599999999999999999999999999999999998764322 23455567889999999999999999886 4789999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC------Cce-eEeeechh-hhHHHHHhcCCH
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP------SVS-ILVDIQNT-LVNDLIIKLGTT  127 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~------~~~-~~v~~~~~-~~~~~~~~~g~~  127 (216)
                      |.+|+|...+                         .+++++  +++++.      +.. |+|+.+.+ +.......+|.+
T Consensus       123 p~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad~~lv--~a~~~~~~~~~~~~~~~lVp~~~~gv~~~~~~~~G~r  200 (372)
T TIGR03207       123 PRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVV--FARTGSEAEGARGISAFLVPMDLPGITRNRFDCHGQR  200 (372)
T ss_pred             CCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCCEEEE--EEEcCCCCCCCCceEEEEEcCCCCCeecCcchhccCC
Confidence            9888775211                         123333  455421      123 56776543 222234455555


Q ss_pred             H--Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cc
Q psy5139         128 E--QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GL  193 (216)
Q Consensus       128 ~--~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~f  193 (216)
                      .  ..+..|+++   .++.++.++.|+......++..|          ..+++..+|.    ++.+++.         +|
T Consensus       201 ~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~a~~~~G~----a~~al~~a~~~~~~R~~f  266 (372)
T TIGR03207       201 AIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSR----------ALIGLQVLAV----ARAALDETWRYVAERQAF  266 (372)
T ss_pred             CCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhcccc
Confidence            3  355677764   45678888888887666666666          8888888988    6666543         49


Q ss_pred             cceeeeeeccc---ccccccccccC
Q psy5139         194 SLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       194 g~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      |+||.+||.||   +||++.++++|
T Consensus       267 g~~i~~~q~v~~~la~~~~~~~~ar  291 (372)
T TIGR03207       267 GKPLSAFQGVSHPLADAETQVEAAR  291 (372)
T ss_pred             CCchhhhHhHHHHHHHHHHHHHHHH
Confidence            99999999999   99999999887

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.

>cd01156 IVD Isovaleryl-CoA dehydrogenase

Probab=99.82  E-value=1.7e-22  Score=163.72  Aligned_cols=198  Identities=27%  Similarity=0.444  Sum_probs=146.6

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+...+.|++++.+.++++.+..|...+...|..+++++|+++|++++.+|+++ +++++|
T Consensus        45 ~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sE  124 (376)
T cd01156          45 LGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSE  124 (376)
T ss_pred             CCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence            5999999999999999999999999999999999987765555545556788999999999999999999975 678999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC-----Cce-eEeeechh-h-hHHHHHhcCCH
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP-----SVS-ILVDIQNT-L-VNDLIIKLGTT  127 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~-----~~~-~~v~~~~~-~-~~~~~~~~g~~  127 (216)
                      |.+|++....                         .+.+++  +++.+.     ++. |+++.+.. + ......++|.+
T Consensus       125 p~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv--~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~  202 (376)
T cd01156         125 PNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVV--YAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMR  202 (376)
T ss_pred             CCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCCEEEE--EEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCC
Confidence            9888774211                         122333  444431     233 66766543 2 12223444433


Q ss_pred             --HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cc
Q psy5139         128 --EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GL  193 (216)
Q Consensus       128 --~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~f  193 (216)
                        ...+..|+++   .+..++..+.|+......+...+          ..+++..+|.    ++.+++.         +|
T Consensus       203 ~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r----------~~~aa~~lG~----a~~al~~~~~~~~~R~~~  268 (376)
T cd01156         203 GSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYER----------LVLAGGPIGI----MQAALDVAIPYAHQRKQF  268 (376)
T ss_pred             CCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHH----------HHHHHHHHHH----HHHHHHHHHHHHHHhHhc
Confidence              3455677764   46678888888887777777776          7788888888    6665543         49


Q ss_pred             cceeeeeeccc---ccccccccccC
Q psy5139         194 SLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       194 g~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      |+||++||.||   +||+++++++|
T Consensus       269 g~~i~~~~~v~~~la~~~~~l~aar  293 (376)
T cd01156         269 GQPIGEFQLVQGKLADMYTRLNASR  293 (376)
T ss_pred             CcchHHhHHHHHHHHHHHHHHHHHH
Confidence            99999999999   99999999886

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.

>cd01157 MCAD Medium chain acyl-CoA dehydrogenase

Probab=99.82  E-value=1.7e-22  Score=163.92  Aligned_cols=197  Identities=23%  Similarity=0.349  Sum_probs=143.5

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+...+.|++++.+.++++.+..+ .+....+..+++++|+++|++++.+|..+ +++++|
T Consensus        44 ~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tE  122 (378)
T cd01157          44 LGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQTAIEAN-SLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTE  122 (378)
T ss_pred             CCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHHHHHHhh-hhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence            5999999999999999999999999999999988876554333 24444567789999999999999999865 688999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC--------Cc-eeEeeechh-h-hHHHHHhc
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP--------SV-SILVDIQNT-L-VNDLIIKL  124 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~--------~~-~~~v~~~~~-~-~~~~~~~~  124 (216)
                      |.+|++...+                         .+++++  +++++.        .+ .|+|+.+.+ + ......++
T Consensus       123 p~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~lv--~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~  200 (378)
T cd01157         123 PGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFL--LARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNM  200 (378)
T ss_pred             CCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCCEEEE--EEEeCCcccCCCCCceEEEEEcCCCCCeeccCccccc
Confidence            9888775311                         123333  555432        12 356766542 2 22233445


Q ss_pred             CCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec--------
Q psy5139         125 GTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC--------  191 (216)
Q Consensus       125 g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~--------  191 (216)
                      |.+  ...+..|+++   .++.++.++.|++.....+...|          ..+++..+|.    ++++++.        
T Consensus       201 G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r----------~~~aa~~lG~----a~~~l~~~~~~~~~R  266 (378)
T cd01157         201 GQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDKTR----------PPVAAGAVGL----AQRALDEATKYALER  266 (378)
T ss_pred             CCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhhhH----------HHHHHHHHHH----HHHHHHHHHHHHHhc
Confidence            544  3445677774   45678888888887666666666          7778888888    6666543        


Q ss_pred             -cccceeeeeeccc---ccccccccccC
Q psy5139         192 -GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 -~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                       +||+||++||.||   +||.++++++|
T Consensus       267 ~~fg~~i~~~q~vq~~la~~~~~~~aar  294 (378)
T cd01157         267 KTFGKLIAEHQAVSFMLADMAMKVELAR  294 (378)
T ss_pred             cccCccHHHhHHHHHHHHHHHHHHHHHH
Confidence             4999999999999   99999999876

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.

>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated

Probab=99.81  E-value=2.5e-22  Score=162.91  Aligned_cols=197  Identities=18%  Similarity=0.197  Sum_probs=144.9

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+...+.|++++.+.+.+..+..+  .....+..+++++|++++++++.+|+.+ +.+++|
T Consensus        49 ~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~--~~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE  126 (380)
T PRK03354         49 MGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLP--GGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITE  126 (380)
T ss_pred             CCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCcchHHHHHhc--ccHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence            5999999999999999999999999999999998876544332  2345688899999999999999999964 789999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC-----Cce-eEeeechh-hhHHHHHhcCCH-
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP-----SVS-ILVDIQNT-LVNDLIIKLGTT-  127 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~-----~~~-~~v~~~~~-~~~~~~~~~g~~-  127 (216)
                      +..|++...+                         .+++++  +++++.     .+. |+++.+.. +......++|.+ 
T Consensus       127 ~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~~ad~~~v--~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~G~r~  204 (380)
T PRK03354        127 PGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVV--MARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRM  204 (380)
T ss_pred             CCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCCcCCEEEE--EEEcCCCCCCCceeEEEEECCCCceEeccccccCCCC
Confidence            9888875311                         123333  455421     123 66775433 222345666654 


Q ss_pred             -HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------ccc
Q psy5139         128 -EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLS  194 (216)
Q Consensus       128 -~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg  194 (216)
                       ...+..|+++   .++.++.++.|+......++..|          ..+++..+|.    ++.+++.         +||
T Consensus       205 ~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r----------~~~aa~~~G~----a~~al~~a~~~a~~R~~fg  270 (380)
T PRK03354        205 DSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHER----------FLVALTNYGT----AMCAFEDAARYANQRVQFG  270 (380)
T ss_pred             CCeEEEEEccEEecHHHcCCCCChHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhhhccC
Confidence             4567778775   45678888888876555555555          7788888888    6666543         499


Q ss_pred             ceeeeeeccc---ccccccccccCC
Q psy5139         195 LQILQFQNLS---SDMHMTGLASRF  216 (216)
Q Consensus       195 ~~i~~~Q~v~---ad~~~~~~~~r~  216 (216)
                      +||.+||.||   +||.+.++++|+
T Consensus       271 ~~i~~~q~vq~~la~~~~~~~aar~  295 (380)
T PRK03354        271 EAIGRFQLIQEKFAHMAIKLNSMKN  295 (380)
T ss_pred             ccHHHhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999   999999998763

>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional

Probab=99.81  E-value=2.8e-22  Score=164.08  Aligned_cols=198  Identities=17%  Similarity=0.314  Sum_probs=143.0

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+...+.|++++.+.+++..+..|..+....+..+++++|+++|++.+.+|+.+ +++++|
T Consensus        80 ~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tE  159 (410)
T PTZ00461         80 LGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSE  159 (410)
T ss_pred             CCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence            5999999999999999999999999999999987765544444434455678899999999999999999876 679999


Q ss_pred             CCCCCCccHH--------------------------HHHHHHHHHHhhCCCc-eeEeeechh--hhHHHHHhcCCH--HH
Q psy5139          81 EYGGPGLSFM--------------------------TDILIVEEIARVDPSV-SILVDIQNT--LVNDLIIKLGTT--EQ  129 (216)
Q Consensus        81 ~~gG~~~~~~--------------------------~~~~v~e~lar~~~~~-~~~v~~~~~--~~~~~~~~~g~~--~~  129 (216)
                      |.+|++....                          .+++++  .++++.+. .|+|+.+.+  .+.....++|.+  ..
T Consensus       160 p~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~~Ad~~lv--~a~~~~~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~  237 (410)
T PTZ00461        160 PGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFLI--YAKVDGKITAFVVERGTKGFTQGPKIDKCGMRASHM  237 (410)
T ss_pred             CCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCccCCEEEE--EEEeCCceEEEEEeCCCCCeecCCCCcccCCCCCce
Confidence            9877764211                          122333  44544443 366766432  112223344443  33


Q ss_pred             hhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------ccccee
Q psy5139         130 KEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQI  197 (216)
Q Consensus       130 ~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~i  197 (216)
                      .+..|+++   .++.++.++.|+......+...+          +.+++..+|.    ++.+++.         +||+||
T Consensus       238 ~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~~fg~~i  303 (410)
T PTZ00461        238 CQLFFEDVVVPAENLLGEEGKGMVGMMRNLELER----------VTLAAMAVGI----AERSVELMTSYASERKAFGKPI  303 (410)
T ss_pred             EEEEEcceecCHHHhCCCCCccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCeecCcCH
Confidence            45667764   45778888888877666666666          7788888888    5555433         499999


Q ss_pred             eeeeccc---ccccccccccC
Q psy5139         198 LQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       198 ~~~Q~v~---ad~~~~~~~~r  215 (216)
                      ++||.||   +||++.++++|
T Consensus       304 ~~~q~vq~~la~~~~~l~aar  324 (410)
T PTZ00461        304 SNFGQIQRYIAEGYADTEAAK  324 (410)
T ss_pred             HhhHHHHHHHHHHHHHHHHHH
Confidence            9999999   99999998876

>PLN02519 isovaleryl-CoA dehydrogenase

Probab=99.81  E-value=4e-22  Score=162.81  Aligned_cols=198  Identities=24%  Similarity=0.394  Sum_probs=147.1

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+.+.+.|++++.+.++++.+..|.......+..+++++|+++|++.+.+|+.. +++++|
T Consensus        71 ~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sE  150 (404)
T PLN02519         71 FNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSE  150 (404)
T ss_pred             CCCCcccCChhhCCCCCCHHHHHHHHHHHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence            5999999999999999999999999999999999988766655545556788999999999999999999865 678999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC-----Cce-eEeeechh-h-hHHHHHhcCCH
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP-----SVS-ILVDIQNT-L-VNDLIIKLGTT  127 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~-----~~~-~~v~~~~~-~-~~~~~~~~g~~  127 (216)
                      +..|++...+                         .+.+++  .++.+.     ++. |+|+.+.. + ......++|.+
T Consensus       151 p~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a~~ad~~~v--~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~r  228 (404)
T PLN02519        151 PNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTLVV--YAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMR  228 (404)
T ss_pred             CCcCCCcccceEEEEEeCCEEEEEeEEEeecCCCcCCEEEE--EEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCC
Confidence            9887775211                         123333  455432     233 66776432 2 22334555544


Q ss_pred             --HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cc
Q psy5139         128 --EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GL  193 (216)
Q Consensus       128 --~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~f  193 (216)
                        ...+..|+++   .++.++.++.|+......+...+          ..+++..+|.    ++.+++.         +|
T Consensus       229 gt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~~~~r----------~~~aa~~lG~----a~~al~~a~~~a~~R~~~  294 (404)
T PLN02519        229 GSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLER----------LVLAAGPLGL----MQACLDVVLPYVRQREQF  294 (404)
T ss_pred             CCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhceeC
Confidence              3456677775   46778888888876666666666          7778888888    5655543         39


Q ss_pred             cceeeeeeccc---ccccccccccC
Q psy5139         194 SLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       194 g~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      |+||.+||.||   +||+++++++|
T Consensus       295 g~pl~~~~~v~~~la~~~~~l~aar  319 (404)
T PLN02519        295 GRPIGEFQFIQGKLADMYTSLQSSR  319 (404)
T ss_pred             CccHHHhHHHHHHHHHHHHHHHHHH
Confidence            99999999999   99999999887

>PTZ00457 acyl-CoA dehydrogenase; Provisional

Probab=99.81  E-value=6.5e-22  Score=163.53  Aligned_cols=186  Identities=19%  Similarity=0.222  Sum_probs=138.7

Q ss_pred             ccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCCC
Q psy5139           3 TLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQE   81 (216)
Q Consensus         3 G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e~   81 (216)
                      ||+++.+|++|||.|++..+.+++.||+++.+.+.+..+..|..++...+..+|+++|+++|+|++.+|+.+ +++++| 
T Consensus        64 Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~AltE-  142 (520)
T PTZ00457         64 NLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWATEE-  142 (520)
T ss_pred             CccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEEEeCC-
Confidence            999999999999999999999999999999876655433345445666788899999999999999999964 778877 


Q ss_pred             CCCCCccHH-------------------------HHHHHHHHHHhhCC------------Cc-eeEeeechh-hhHHHHH
Q psy5139          82 YGGPGLSFM-------------------------TDILIVEEIARVDP------------SV-SILVDIQNT-LVNDLII  122 (216)
Q Consensus        82 ~gG~~~~~~-------------------------~~~~v~e~lar~~~------------~~-~~~v~~~~~-~~~~~~~  122 (216)
                      .+|+|...+                         .+.+++  +++++.            ++ .|+|+.+.+ +...   
T Consensus       143 ~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t~g~~Ad~~lV--~Art~~~~~~~~g~~~~~git~FlV~~dapGVtv~---  217 (520)
T PTZ00457        143 GCGSDISMNTTKASLTDDGSYVLTGQKRCEFAASATHFLV--LAKTLTQTAAEEGATEVSRNSFFICAKDAKGVSVN---  217 (520)
T ss_pred             CCCCccccceeEEEEcCCCeEEEEEEEEEEcCchhcEEEE--EeecCCcccccccccCcCceEEEEEECCCCceEEe---
Confidence            777775321                         122233  455321            12 366665432 1110   


Q ss_pred             hcCCHHHhhhhchhc-ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeeccccceeeeee
Q psy5139         123 KLGTTEQKEKYLPRL-AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQ  201 (216)
Q Consensus       123 ~~g~~~~~~~~l~~~-~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~~fg~~i~~~Q  201 (216)
                            ..+.+|+++ .++.+|.++.|++.....++..|          ..+++.++|.    ++++++.+-.  -..+|
T Consensus       218 ------~~eV~FddVP~~~vLG~~g~G~~~a~~~L~~~R----------l~~aA~~vGi----a~~ale~av~--ya~~Q  275 (520)
T PTZ00457        218 ------GDSVVFENTPAADVVGVVGEGFKDAMITLFTEQ----------YLYAASLLGI----MKRVVQELRG--SNAEE  275 (520)
T ss_pred             ------cCEEEECCCCHHHhCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHH--HHHhh
Confidence                  146788876 46788999999998888888888          9999999999    8888876511  12369


Q ss_pred             ccc---ccccccccccCC
Q psy5139         202 NLS---SDMHMTGLASRF  216 (216)
Q Consensus       202 ~v~---ad~~~~~~~~r~  216 (216)
                      +||   |||+++++++|.
T Consensus       276 aVq~~LAdma~~ieAars  293 (520)
T PTZ00457        276 GATDTVASFACAMYAMES  293 (520)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999   999999999873

>cd01151 GCD Glutaryl-CoA dehydrogenase

Probab=99.80  E-value=7.6e-22  Score=160.42  Aligned_cols=196  Identities=24%  Similarity=0.304  Sum_probs=141.4

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++ +|++|||.|+++.+...+.|++++.+.+.+..+..+...+...+..+++++|++++++.+.+|+++ +++++|
T Consensus        56 ~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tE  134 (386)
T cd01151          56 LGLLGA-TIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTE  134 (386)
T ss_pred             CCCCcc-CccccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecC
Confidence            599999 999999999999999999999999988876555555445556788999999999999999999975 678999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhC--CCc-eeEeeechh-h-hHHHHHhcCCH--H
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVD--PSV-SILVDIQNT-L-VNDLIIKLGTT--E  128 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~--~~~-~~~v~~~~~-~-~~~~~~~~g~~--~  128 (216)
                      +..|++....                         .+++++  .+|.+  ..+ .|+|+.+.+ + ......++|.+  .
T Consensus       135 p~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~~Ad~~lv--~ar~~~~~~~~~flVp~~~~gv~i~~~~~~~G~~g~~  212 (386)
T cd01151         135 PNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVV--WARNDETGKIRGFILERGMKGLSAPKIQGKFSLRASI  212 (386)
T ss_pred             CCCCCChhhCeEEEEEECCEEEEEEEEEeecCCCcCCEEEE--EEEECCCCcEEEEEEcCCCCCeecCCCCCCcCCCCCc
Confidence            9888876321                         123333  45544  223 366776532 1 12223445544  3


Q ss_pred             Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccce
Q psy5139         129 QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQ  196 (216)
Q Consensus       129 ~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~  196 (216)
                      ..+..|+++   .++.++. +.|+......+...|          ..+++..+|.    ++.+++.         +||+|
T Consensus       213 s~~v~f~~v~Vp~~~~l~~-~~g~~~~~~~~~~~r----------~~~aa~~lG~----a~~al~~a~~~a~~R~~~g~~  277 (386)
T cd01151         213 TGEIVMDNVFVPEENLLPG-AEGLRGPFKCLNNAR----------YGIAWGALGA----AEDCYHTARQYVLDRKQFGRP  277 (386)
T ss_pred             eeEEEEccEEeCHHHcCCc-cccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCeecCCc
Confidence            455667764   3456654 457666555555555          7788888888    5655533         49999


Q ss_pred             eeeeeccc---ccccccccccC
Q psy5139         197 ILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       197 i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      |++||.||   +||++.++++|
T Consensus       278 i~~~q~vq~~la~~~~~~eaar  299 (386)
T cd01151         278 LAAFQLVQKKLADMLTEIALGL  299 (386)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999   99999999887

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.

>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase

Probab=99.80  E-value=1.2e-21  Score=160.28  Aligned_cols=197  Identities=22%  Similarity=0.373  Sum_probs=142.9

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +||+++.+|++|||.|+++.+...+.|++++ +.+....+..|...+...+..+++++|++++++.+.+|+.+ +++++|
T Consensus        68 ~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE  146 (409)
T cd01161          68 LGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTE  146 (409)
T ss_pred             CCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecC
Confidence            5999999999999999999999999999999 88776655555444445578899999999999999999976 678999


Q ss_pred             CCCCCCccHH---------------------------HHHHHHHHHHhhC---------CCce-eEeeechh-h-hHHHH
Q psy5139          81 EYGGPGLSFM---------------------------TDILIVEEIARVD---------PSVS-ILVDIQNT-L-VNDLI  121 (216)
Q Consensus        81 ~~gG~~~~~~---------------------------~~~~v~e~lar~~---------~~~~-~~v~~~~~-~-~~~~~  121 (216)
                      +..|++....                           .+.+++  .++++         ..+. |+++.+.. + .....
T Consensus       147 p~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv--~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~  224 (409)
T cd01161         147 PSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTV--FAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPE  224 (409)
T ss_pred             CCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEE--EEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcc
Confidence            9877764311                           122222  34432         1222 56665432 1 12223


Q ss_pred             HhcCCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec-----
Q psy5139         122 IKLGTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC-----  191 (216)
Q Consensus       122 ~~~g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~-----  191 (216)
                      .++|.+  ...+..|+++   .++.++.++.|++.....+...|          ..+++..+|.    ++++++.     
T Consensus       225 ~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r----------~~~aa~~lG~----a~~al~~a~~~a  290 (409)
T cd01161         225 KKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGR----------FGMGAALIGT----MKRCIEKAVDYA  290 (409)
T ss_pred             cccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHH----------HHHHHHHHHH----HHHHHHHHHHHH
Confidence            444443  3455667764   45678888888887777777776          8888888988    6666543     


Q ss_pred             ----cccceeeeeeccc---ccccccccccC
Q psy5139         192 ----GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 ----~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                          +||+||.+||.||   +||.+.++++|
T Consensus       291 ~~R~~fg~~l~~~q~vq~~la~~~~~~~aar  321 (409)
T cd01161         291 NNRKQFGKKIHEFGLIQEKLANMAILQYATE  321 (409)
T ss_pred             HhceeCCccHHHhHHHHHHHHHHHHHHHHHH
Confidence                4999999999999   99999998876

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.

>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

Probab=99.79  E-value=1e-20  Score=153.52  Aligned_cols=196  Identities=21%  Similarity=0.330  Sum_probs=142.2

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHH-HHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCc-eeeecC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSIL-VDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDL-MGVEIP   79 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~-~~~~~~   79 (216)
                      +||+++.+|++|||.|.++.+.+.+.|++++.+.+.++. ...  ......+..+++++|+++|++++.+++. .+++++
T Consensus        47 ~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~--~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~t  124 (380)
T cd01152          47 AGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAPVPFNQIGI--DLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFS  124 (380)
T ss_pred             CCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCCcccchhhH--HHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecC
Confidence            699999999999999999999999999999999888764 322  2345568899999999999999999996 478899


Q ss_pred             CCCCCCCccHH-------------------------HHHHHHHHHHhhCC------Cc-eeEeeechh-hh-HHHHHhcC
Q psy5139          80 QEYGGPGLSFM-------------------------TDILIVEEIARVDP------SV-SILVDIQNT-LV-NDLIIKLG  125 (216)
Q Consensus        80 e~~gG~~~~~~-------------------------~~~~v~e~lar~~~------~~-~~~v~~~~~-~~-~~~~~~~g  125 (216)
                      |+..|++....                         .+.+++  .+++++      .+ .|+|+.+.. +. ......+|
T Consensus       125 E~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ad~~lv--~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g  202 (380)
T cd01152         125 EPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWL--LVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING  202 (380)
T ss_pred             CCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccccCEEEE--EEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC
Confidence            98888775211                         133333  455432      23 367776432 22 12223455


Q ss_pred             CHHHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec-----ccccee
Q psy5139         126 TTEQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC-----GLSLQI  197 (216)
Q Consensus       126 ~~~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~-----~fg~~i  197 (216)
                      .....+..|+++   .++.++.++.|+..+...+...|          ..+++...+.    .+.++++     .||+||
T Consensus       203 ~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~~~~~~~~----~~~a~~~a~~r~~~g~~l  268 (380)
T cd01152         203 GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNFER----------VSIGGSAATF----FELLLARLLLLTRDGRPL  268 (380)
T ss_pred             CCCcceEEecCcCcchhcccCCCCchHHHHHHHHHhcc----------cccchhhhHH----HHHHHHHHHHHHhcCCCc
Confidence            445566677764   46788888889887777666666          6665555555    4444443     399999


Q ss_pred             eeeeccc---ccccccccccC
Q psy5139         198 LQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       198 ~~~Q~v~---ad~~~~~~~~r  215 (216)
                      .+||.||   +||+++++++|
T Consensus       269 ~~~~~vq~~la~~~~~l~~a~  289 (380)
T cd01152         269 IDDPLVRQRLARLEAEAEALR  289 (380)
T ss_pred             ccCHHHHHHHHHHHHHHHHHH
Confidence            9999999   99999999886

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>PTZ00456 acyl-CoA dehydrogenase; Provisional

Probab=99.79  E-value=1.9e-21  Score=164.87  Aligned_cols=197  Identities=19%  Similarity=0.211  Sum_probs=142.4

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|++.....++.|.+.+.+.+.......+ ......|..+|+++||++|+|++.+|++. +++++|
T Consensus       111 ~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l~-~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTE  189 (622)
T PTZ00456        111 GGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLS-IGAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTE  189 (622)
T ss_pred             cCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccC
Confidence            5999999999999999998755555555666666544332222 23456789999999999999999999986 689999


Q ss_pred             CCCCCCccHH---------------------H---------HHHHHHHHHhhCC------Cce-eEeeechh--------
Q psy5139          81 EYGGPGLSFM---------------------T---------DILIVEEIARVDP------SVS-ILVDIQNT--------  115 (216)
Q Consensus        81 ~~gG~~~~~~---------------------~---------~~~v~e~lar~~~------~~~-~~v~~~~~--------  115 (216)
                      |.+|+|+..+                     +         .+.++  ++|+++      +++ |+|+.+..        
T Consensus       190 p~aGSD~~~l~T~A~~~gdG~y~L~G~K~fIt~g~~~~~~n~~~lV--lAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~  267 (622)
T PTZ00456        190 PQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTENIVHIV--LARLPNSLPTTKGLSLFLVPRHVVKPDGSLET  267 (622)
T ss_pred             CccCCCcccCeeEEEECCCCcEEEeeEEEEecCCchhhccCcEEEE--EEEecCCCCCCCceEEEEEeCCCCCcCCCccC
Confidence            9999886311                     1         11234  677542      244 77875321        


Q ss_pred             ----hhHHHHHhcCCH--HHhhhhchhcccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeee
Q psy5139         116 ----LVNDLIIKLGTT--EQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMV  189 (216)
Q Consensus       116 ----~~~~~~~~~g~~--~~~~~~l~~~~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~  189 (216)
                          .+.....++|.+  ......|+++...++|+++.|+..+...++..|          +.+++..+|.    ++.++
T Consensus       268 ~~gv~~~~~~~kmG~~gs~t~~l~fd~~~~~llG~~~~Gl~~~~~~mn~aR----------l~vaa~~lG~----a~~Al  333 (622)
T PTZ00456        268 AKNVKCIGLEKKMGIKGSSTCQLSFENSVGYLIGEPNAGMKQMFTFMNTAR----------VGTALEGVCH----AELAF  333 (622)
T ss_pred             CCCeeecCcccccCCCCCceEEEEeeChhHhhcCCCChHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHH
Confidence                112234566755  345668888777889999999998888888888          9999999988    44444


Q ss_pred             ec---------c------------ccceeeeeeccc---ccccccccccC
Q psy5139         190 SC---------G------------LSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       190 ~~---------~------------fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      +.         +            |++||.+||.||   ++|.+.+|++|
T Consensus       334 ~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaar  383 (622)
T PTZ00456        334 QNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGR  383 (622)
T ss_pred             HHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHH
Confidence            21         2            588999999999   99998888776

>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2

Probab=99.79  E-value=9.4e-22  Score=160.24  Aligned_cols=199  Identities=18%  Similarity=0.248  Sum_probs=140.5

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccC-CChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVD-PSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIP   79 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~   79 (216)
                      +||+++.+|++|||.|+++.+.+.+.|++++.+ .+.+.....+.......+..+++++|+++|++++.+|+.+ +++++
T Consensus        53 ~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~t  132 (394)
T cd01155          53 EGLWNLFLPEVSGLSGLTNLEYAYLAEETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMT  132 (394)
T ss_pred             CCCCCCCCChhhCCCCcCHHHHHHHHHHHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeC
Confidence            699999999999999999999999999999985 3333222111112334688999999999999999999876 68999


Q ss_pred             CCC-CCCCccHH--------------------H-------HHHHHHHHHhhCC-------Cce-eEeeechh--hhHHHH
Q psy5139          80 QEY-GGPGLSFM--------------------T-------DILIVEEIARVDP-------SVS-ILVDIQNT--LVNDLI  121 (216)
Q Consensus        80 e~~-gG~~~~~~--------------------~-------~~~v~e~lar~~~-------~~~-~~v~~~~~--~~~~~~  121 (216)
                      |+. +|++...+                    +       +.+++  +++++.       .+. |+|+.+.+  ......
T Consensus       133 E~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~~~a~~~~v--~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~  210 (394)
T cd01155         133 EPDVASSDATNIECSIERDGDDYVINGRKWWSSGAGDPRCKIAIV--MGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPL  210 (394)
T ss_pred             CCCCCCCchhhCEEEEEEECCEEEEEEEEEEEcCCCCCCCCEEEE--EEEeCCCcCCCCCceEEEEEeCCCCCeEeeccc
Confidence            986 56664311                    1       12233  444321       233 67776532  222334


Q ss_pred             HhcCCHH----Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---
Q psy5139         122 IKLGTTE----QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---  191 (216)
Q Consensus       122 ~~~g~~~----~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---  191 (216)
                      .++|.+.    ..+..|+++   .++.++.++.|++.....+...|          ...++..+|.    ++++++.   
T Consensus       211 ~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~g~~~~~~~~~~~r----------~~~~a~~lG~----a~~al~~~~~  276 (394)
T cd01155         211 SVFGYDDAPHGHAEITFDNVRVPASNLILGEGRGFEIAQGRLGPGR----------IHHCMRLIGA----AERALELMCQ  276 (394)
T ss_pred             cccCCCCCCCCeeEEEEccEEecHHHcCCCCChHHHHHHHHhhhhH----------HHHHHHHHHH----HHHHHHHHHH
Confidence            5565552    346677774   45678888888887777666666          7778888888    5555532   


Q ss_pred             ------cccceeeeeeccc---ccccccccccCC
Q psy5139         192 ------GLSLQILQFQNLS---SDMHMTGLASRF  216 (216)
Q Consensus       192 ------~fg~~i~~~Q~v~---ad~~~~~~~~r~  216 (216)
                            +||+||++||.||   +||++.++++|+
T Consensus       277 ~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~  310 (394)
T cd01155         277 RAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARL  310 (394)
T ss_pred             HHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHH
Confidence                  4999999999999   999999998873

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.

>KOG0137|consensus

Probab=99.78  E-value=1.9e-21  Score=157.00  Aligned_cols=196  Identities=20%  Similarity=0.317  Sum_probs=158.6

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +|++++.+|++|+|.|+.+.+...+.|..+-.+.+++..+..|..++...|..+|+++|+++|+|.+++|+.+ +++++|
T Consensus       121 lG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE  200 (634)
T KOG0137|consen  121 LGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTE  200 (634)
T ss_pred             hCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEec
Confidence            6999999999999999999999999999998899988888878777888899999999999999999999997 689999


Q ss_pred             CCCCCCccHH---------------------------HHHHHHHHHHhhCC---------C-ceeEeeechh--hhHHHH
Q psy5139          81 EYGGPGLSFM---------------------------TDILIVEEIARVDP---------S-VSILVDIQNT--LVNDLI  121 (216)
Q Consensus        81 ~~gG~~~~~~---------------------------~~~~v~e~lar~~~---------~-~~~~v~~~~~--~~~~~~  121 (216)
                      |-+|||.+..                           .+++.+  +|++..         . ++|+|+.+..  ....+.
T Consensus       201 ~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~V--fAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e  278 (634)
T KOG0137|consen  201 PSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTV--FAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPE  278 (634)
T ss_pred             CCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeee--eeccccCCCCccccCceEEEEEeccccCccCCCch
Confidence            9999987632                           244555  777641         1 4588887543  334556


Q ss_pred             HhcCCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec-----
Q psy5139         122 IKLGTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC-----  191 (216)
Q Consensus       122 ~~~g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~-----  191 (216)
                      .++|.+  .+.+++|+++   .++++|.+++|+++.+..++..|          ...++...|.    +++++++     
T Consensus       279 ~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR----------~~~aaa~~G~----mkr~I~~~~d~~  344 (634)
T KOG0137|consen  279 KKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGR----------FGMAAALLGL----MKRIIEEAADYA  344 (634)
T ss_pred             hhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCC----------cchhHHHHHH----HHHHHHHHHHHh
Confidence            777776  3445677754   57899999999999999999998          8899999998    5555533     


Q ss_pred             ----cccceeeeeeccc---ccccccccc
Q psy5139         192 ----GLSLQILQFQNLS---SDMHMTGLA  213 (216)
Q Consensus       192 ----~fg~~i~~~Q~v~---ad~~~~~~~  213 (216)
                          +||+++.+|-.+|   +.|.+.+.+
T Consensus       345 ~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya  373 (634)
T KOG0137|consen  345 TNRTQFGKKLHDFGLIQEKVAEMASKVYA  373 (634)
T ss_pred             hcceecCcchhhhhhHHHHHHHHHHHHHH
Confidence                3999999999999   666655443

>cd01162 IBD Isobutyryl-CoA dehydrogenase

Probab=99.78  E-value=2.9e-21  Score=156.48  Aligned_cols=197  Identities=22%  Similarity=0.332  Sum_probs=143.3

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|.++.+.+.+.|++++.+.+++.++..|. +....+..+++++|+++|++++.+++.+ +++++|
T Consensus        44 ~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE  122 (375)
T cd01162          44 LGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTE  122 (375)
T ss_pred             CCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecC
Confidence            59999999999999999999999999999999998876665554 4555678899999999999999999965 689999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC----Cce-eEeeechh-h-hHHHHHhcCCH-
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP----SVS-ILVDIQNT-L-VNDLIIKLGTT-  127 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~----~~~-~~v~~~~~-~-~~~~~~~~g~~-  127 (216)
                      +..|+|...+                         .+.+++  +++.+.    ... |+|+.+.+ + ......++|.+ 
T Consensus       123 ~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~~v--~a~~~~~~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~  200 (375)
T cd01162         123 PGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVV--MARTGGEGPKGISCFVVEKGTPGLSFGANEKKMGWNA  200 (375)
T ss_pred             CCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCCEEEE--EEEecCCCCCceEEEEEeCCCCCeecCCcccccCCCC
Confidence            9888875311                         122333  344321    122 55665432 1 11222333432 


Q ss_pred             -HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------ccc
Q psy5139         128 -EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLS  194 (216)
Q Consensus       128 -~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg  194 (216)
                       ...+..|+++   .++.++.++.|++.....+...|          ..+++..+|.    ++++++.         +||
T Consensus       201 ~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~aa~~lG~----a~~al~~~~~~a~~R~~fg  266 (375)
T cd01162         201 QPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGR----------LNIASCSLGA----AQAALDLARAYLEERKQFG  266 (375)
T ss_pred             CCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhhhccC
Confidence             3455667764   45678888888877666666666          7788888998    6666543         499


Q ss_pred             ceeeeeeccc---ccccccccccC
Q psy5139         195 LQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       195 ~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      +||++||.||   +||.++++++|
T Consensus       267 ~~l~~~~~vq~~la~~~~~l~~a~  290 (375)
T cd01162         267 KPLADFQALQFKLADMATELVASR  290 (375)
T ss_pred             ccHHhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999   99999999876

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.

>cd01160 LCAD Long chain acyl-CoA dehydrogenase

Probab=99.78  E-value=4.1e-21  Score=155.49  Aligned_cols=197  Identities=23%  Similarity=0.399  Sum_probs=142.5

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +||+++.+|++|||.|+++.+...+.|++++.+.+ .+.+..|..++...+..+++++|+++|++.+.+|+.+ +++++|
T Consensus        42 ~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE  120 (372)
T cd01160          42 QGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTE  120 (372)
T ss_pred             CCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence            59999999999999999999999999999996555 3445445445566788999999999999999999965 689999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC------Cc-eeEeeechh-h-hHHHHHhcCC
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP------SV-SILVDIQNT-L-VNDLIIKLGT  126 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~------~~-~~~v~~~~~-~-~~~~~~~~g~  126 (216)
                      +..|++...+                         .+.+++  .++++.      ++ .|+++.+.. + .......+|.
T Consensus       121 ~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~v--~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~  198 (372)
T cd01160         121 PGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIV--VARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGW  198 (372)
T ss_pred             CCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEEE--EEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccC
Confidence            9888775311                         123333  444432      22 266665432 2 2233445553


Q ss_pred             H--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------c
Q psy5139         127 T--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------G  192 (216)
Q Consensus       127 ~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~  192 (216)
                      +  ...+..|+++   .+..++.++.|+......+...+          ..+++..+|.    ++.+++.         +
T Consensus       199 ~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~----------~~~aa~~lG~----a~~al~~a~~~a~~R~~  264 (372)
T cd01160         199 KAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQER----------LLIAAGALAA----AEFMLEETRNYVKQRKA  264 (372)
T ss_pred             CCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhhhc
Confidence            3  3445667764   45678888888877666666666          7778888888    6655543         4


Q ss_pred             ccceeeeeeccc---ccccccccccC
Q psy5139         193 LSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       193 fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      ||+||++||.||   +||.++++++|
T Consensus       265 ~g~~i~~~q~vq~~la~~~~~~~~a~  290 (372)
T cd01160         265 FGKTLAQLQVVRHKIAELATKVAVTR  290 (372)
T ss_pred             cCccHHhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999   99999998876

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.

>PRK12341 putative acyl-CoA dehydrogenase; Provisional

Probab=99.78  E-value=3.7e-21  Score=156.16  Aligned_cols=195  Identities=18%  Similarity=0.253  Sum_probs=141.7

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHH-HhCCc-eeeecC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL-AQTDL-MGVEIP   79 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l-~~g~~-~~~~~~   79 (216)
                      .||+++.+|++|||.|+++.+.+.+.|++++.+.+. ..+  ++......+..+++++|++++++++ .+|+. .+++++
T Consensus        49 ~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~~-~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~t  125 (381)
T PRK12341         49 NGISMLGVPEEFGGTPADYVTQMLVLEEVSKCGAPA-FLI--TNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALT  125 (381)
T ss_pred             CCCCCcCCChhhCCCCcCHHHHHHHHHHHhhcChhH-HHH--hhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEec
Confidence            599999999999999999999999999999998874 233  2223445578899999999999998 48885 578999


Q ss_pred             CCCCCCCccHH-------------------------HHHHHHHHHHhhCC------Cce-eEeeechh-hhHHHHHhcCC
Q psy5139          80 QEYGGPGLSFM-------------------------TDILIVEEIARVDP------SVS-ILVDIQNT-LVNDLIIKLGT  126 (216)
Q Consensus        80 e~~gG~~~~~~-------------------------~~~~v~e~lar~~~------~~~-~~v~~~~~-~~~~~~~~~g~  126 (216)
                      ||..|+|...+                         .+.+++  .++.+.      .++ |+|+.+.+ +...+..++|.
T Consensus       126 Ep~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~Ad~~~v--~a~~~~~~~~~~~~~~~lV~~~~~gv~~~~~~~~G~  203 (381)
T PRK12341        126 EPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLV--LARDPQPKDPKKAFTLWWVDSSKPGIKINPLHKIGW  203 (381)
T ss_pred             CCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccCCEEEE--EEEcCCCCCCCCceEEEEEeCCCCceeecccccccC
Confidence            99888875321                         122333  444321      123 66776543 21234455554


Q ss_pred             H--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------c
Q psy5139         127 T--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------G  192 (216)
Q Consensus       127 ~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~  192 (216)
                      +  ......|+++   .++.++.++.|+......+...|          ..+++..+|.    ++.+++.         +
T Consensus       204 ~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r----------~~~aa~~lG~----a~~al~~~~~~~~~R~~  269 (381)
T PRK12341        204 HMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMER----------LINAARSLGF----AECAFEDAARYANQRIQ  269 (381)
T ss_pred             CCCCceEEEECcEEecHHHcCCCCChHHHHHHHHHHhHH----------HHHHHHHHHH----HHHHHHHHHHHHHhhhC
Confidence            4  3445667764   36778888888877665666666          8888899998    5555543         4


Q ss_pred             ccceeeeeeccc---ccccccccccC
Q psy5139         193 LSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       193 fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      ||+||.+||.||   ++|.++++++|
T Consensus       270 ~g~~i~~~~~v~~~la~~~~~~~aar  295 (381)
T PRK12341        270 FGKPIGHNQLIQEKLTLMAIKIENMR  295 (381)
T ss_pred             CCccHHHhHHHHHHHHHHHHHHHHHH
Confidence            999999999999   99999999886

>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]

Probab=99.77  E-value=3.4e-21  Score=156.99  Aligned_cols=199  Identities=30%  Similarity=0.468  Sum_probs=152.2

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHh---hHHHHHHhcCChhHHHHHHHHHHhCCce-eee
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT---LVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVE   77 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~---~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~   77 (216)
                      .||+++.+|++|||.+.+......+.|++++.+.+.......+..   .....+..+++++|++++++++.+|+++ +++
T Consensus        51 ~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~  130 (393)
T COG1960          51 AGLLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFA  130 (393)
T ss_pred             CCcccCCCChhhCCCCcchhHHHHHHHHHHhhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheee
Confidence            599999999999999999999999999999998876443332221   2333577899999999999999999665 789


Q ss_pred             cCCCCCCCCccHHH--------------------------HHHHHHHHHhhCCC------ce-eEeeec--hhhhHHHHH
Q psy5139          78 IPQEYGGPGLSFMT--------------------------DILIVEEIARVDPS------VS-ILVDIQ--NTLVNDLII  122 (216)
Q Consensus        78 ~~e~~gG~~~~~~~--------------------------~~~v~e~lar~~~~------~~-~~v~~~--~~~~~~~~~  122 (216)
                      ++||.+|+|+....                          ++.++  ++|++..      ++ |+|+.+  ..+....+.
T Consensus       131 ~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~is~~~~ad~~~v--~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~  208 (393)
T COG1960         131 LTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLV--LARTDPAPGKHKGISLFLVPKDLTPGVSVGPIL  208 (393)
T ss_pred             ccCCCCCcchhcCceeEEEecCCCEEEEeEEEEEcCCCCCCEEEE--EEEcCCcccccCceEEEEEeCCCCCCeeecccc
Confidence            99999999863211                          22244  6777553      33 778765  244445555


Q ss_pred             hc-CCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec-----
Q psy5139         123 KL-GTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC-----  191 (216)
Q Consensus       123 ~~-g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~-----  191 (216)
                      .. |.+  ...+.+|+++   .++++|+++.|++.+...++..|          ..+++..+|.    ++.+++.     
T Consensus       209 ~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~~~~ya  274 (393)
T COG1960         209 KKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVER----------LGIAAQALGI----AEAALEEAVAYA  274 (393)
T ss_pred             CcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHHHHhhchHH----------HHHHHHHHHH----HHHHHHHHHHHH
Confidence            55 544  5567788874   56789999999999999988888          8888888888    5555533     


Q ss_pred             ----cccceeeeeeccc---ccccccccccCC
Q psy5139         192 ----GLSLQILQFQNLS---SDMHMTGLASRF  216 (216)
Q Consensus       192 ----~fg~~i~~~Q~v~---ad~~~~~~~~r~  216 (216)
                          +||+||++||.||   +||+++++++|+
T Consensus       275 ~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~  306 (393)
T COG1960         275 RERKQFGRPIADFQLVQFKLADMAAELEAARL  306 (393)
T ss_pred             HHhHhcCCchhhcHHHHHHHHHHHHHHHHHHH
Confidence                4999999999999   999999998873

>PLN02876 acyl-CoA dehydrogenase

Probab=99.75  E-value=1.5e-20  Score=165.20  Aligned_cols=199  Identities=20%  Similarity=0.256  Sum_probs=143.7

Q ss_pred             CccccccCCCC------------------------CCCCCCCHHHHHHHHHHHHccCCChhHH-HHHHHhhHHHHHHhcC
Q psy5139           2 TTLLGVEIPQE------------------------YGGPGLSFMTDILIVEEIARVDPSVSIL-VDIQNTLVNDLIIKLG   56 (216)
Q Consensus         2 ~G~~~~~~p~~------------------------~GG~g~~~~~~~~~~ee~~~~~~~~~~~-~~~~~~~~~~~l~~~g   56 (216)
                      +||+++.+|++                        |||.|++..+.+++.|++++.+.+.+.+ ...+.......|..+|
T Consensus       454 ~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~g  533 (822)
T PLN02876        454 EGLWNLWIPLDSAARARKLLFEDNKHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYG  533 (822)
T ss_pred             cCcccCCCCchhhhhhhhcccccccccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhC
Confidence            69999999995                        9999999999999999999986543221 1111112334688999


Q ss_pred             ChhHHHHHHHHHHhCCce-eeecCCCC-CCCCccHH---------------------------HHHHHHHHHHhhCC---
Q psy5139          57 TTEQKEKYLPRLAQTDLM-GVEIPQEY-GGPGLSFM---------------------------TDILIVEEIARVDP---  104 (216)
Q Consensus        57 ~~~~~~~~l~~l~~g~~~-~~~~~e~~-gG~~~~~~---------------------------~~~~v~e~lar~~~---  104 (216)
                      +++|++++++++.+|+++ +++++|+. +|++...+                           .+.+++  ++++++   
T Consensus       534 t~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv--~ar~~~~~~  611 (822)
T PLN02876        534 NKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIV--MGKTDFNAP  611 (822)
T ss_pred             CHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEE--EEecCCCCC
Confidence            999999999999999976 78999996 67765311                           112233  455432   


Q ss_pred             ---Cce-eEeeechh-hh-HHHHHhcCCHH----Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeecccee
Q psy5139         105 ---SVS-ILVDIQNT-LV-NDLIIKLGTTE----QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLS  171 (216)
Q Consensus       105 ---~~~-~~v~~~~~-~~-~~~~~~~g~~~----~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~  171 (216)
                         ..+ |+|+.+.. +. .....++|.+.    ..+..|+++   .++.++.++.|++.+...+...|          .
T Consensus       612 ~~~~~s~flV~~~~pGv~i~~~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r----------~  681 (822)
T PLN02876        612 KHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGR----------L  681 (822)
T ss_pred             CCCcceEEEEeCCCCCceeecccceeccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhH----------H
Confidence               233 67776543 22 23445566552    456788874   46788888888888777777777          8


Q ss_pred             eeecCcccCCCcceeeeeec---------cccceeeeeeccc---ccccccccccCC
Q psy5139         172 HISSGCVGFDGQLKRWMVSC---------GLSLQILQFQNLS---SDMHMTGLASRF  216 (216)
Q Consensus       172 ~va~~~~g~~~~~~~~~~~~---------~fg~~i~~~Q~v~---ad~~~~~~~~r~  216 (216)
                      .+++..+|.    ++++++.         +||+||++||.||   +||.+.++++|.
T Consensus       682 ~~aa~~vG~----a~~ale~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~leaar~  734 (822)
T PLN02876        682 HHCMRLIGA----AERGMQLMVQRALSRKAFGKLIAQHGSFLSDLAKCRVELEQTRL  734 (822)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHhhhhcCCchhhCHHHHHHHHHHHHHHHHHHH
Confidence            888889998    6655543         4999999999999   999999998873

>PLN02526 acyl-coenzyme A oxidase

Probab=99.75  E-value=2.4e-20  Score=152.67  Aligned_cols=196  Identities=23%  Similarity=0.298  Sum_probs=138.4

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +||+++.+ ++|||.|+++.+.+.+.|++++.+.+.+..+..|..++...+..+++++|+++|++++.+++.+ +++++|
T Consensus        72 ~G~~~~~v-~~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE  150 (412)
T PLN02526         72 LGIAGGTI-KGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTE  150 (412)
T ss_pred             CCCCcCcc-cccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecC
Confidence            59999999 9999999999999999999999988876555555545555788999999999999999999876 678999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhC--CCce-eEeeechh-h-hHHHHHhcCCH--H
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVD--PSVS-ILVDIQNT-L-VNDLIIKLGTT--E  128 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~--~~~~-~~v~~~~~-~-~~~~~~~~g~~--~  128 (216)
                      +..|++....                         .+++++  +++++  ..+. |+|+.+.. + ......++|.+  .
T Consensus       151 p~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv--~a~~~~~~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~  228 (412)
T PLN02526        151 PDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFADVLVI--FARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQ  228 (412)
T ss_pred             CCCCCChhhCeeEEEEECCEEEEEEEEeeecCCCccCEEEE--EEEeCCCCCeEEEEEcCCCCCeEcCCCCCccCcCCCC
Confidence            9877765321                         122233  44432  2222 56665432 2 12223345544  3


Q ss_pred             Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccce
Q psy5139         129 QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQ  196 (216)
Q Consensus       129 ~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~  196 (216)
                      ..+..|+++   .++.++.. .+++.....+...|          ..+++..+|.    ++.+++.         +||+|
T Consensus       229 s~~v~f~~v~Vp~~~~l~~~-~~~~~~~~~~~~~r----------~~~aa~~lG~----a~~al~~a~~~a~~R~~fg~~  293 (412)
T PLN02526        229 NGDIVLKDVFVPDEDRLPGV-NSFQDTNKVLAVSR----------VMVAWQPIGI----SMGVYDMCHRYLKERKQFGAP  293 (412)
T ss_pred             eeEEEEeeEEECHHHhCCCc-ccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCeeCCCc
Confidence            456677764   24556544 35555555555566          7788888888    5555543         49999


Q ss_pred             eeeeeccc---ccccccccccC
Q psy5139         197 ILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       197 i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      |++||.+|   +||.++++++|
T Consensus       294 i~~~q~vq~~la~~~~~l~aar  315 (412)
T PLN02526        294 LAAFQINQEKLVRMLGNIQAMF  315 (412)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999   99999999886

>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

Probab=99.72  E-value=1.2e-19  Score=146.99  Aligned_cols=198  Identities=31%  Similarity=0.500  Sum_probs=142.9

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|.++.+.+.+.|++++.+.++++.+..|...+...+..++++++++++++.+.+|+.+ ++.++|
T Consensus        42 ~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se  121 (373)
T cd01158          42 LGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSE  121 (373)
T ss_pred             CCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecC
Confidence            5999999999999999999999999999999999988777666545666788999999999999999999765 678899


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC-----Cce-eEeeechh--hhHHHHHhcCCH
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP-----SVS-ILVDIQNT--LVNDLIIKLGTT  127 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~-----~~~-~~v~~~~~--~~~~~~~~~g~~  127 (216)
                      +.+|++....                         .+.+++  .++.+.     .+. |+++.+.+  ........+|.+
T Consensus       122 ~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~lv--~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~  199 (373)
T cd01158         122 PGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIV--FAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIR  199 (373)
T ss_pred             CCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEEE--EEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccC
Confidence            8877764211                         122332  344321     123 56665432  122223334433


Q ss_pred             --HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cc
Q psy5139         128 --EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GL  193 (216)
Q Consensus       128 --~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~f  193 (216)
                        ...+..|+++   .++.++.++.|+......+...+          ...++..+|.    ++.+++.         .|
T Consensus       200 g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r----------~~~~a~~lG~----a~~~l~~~~~~~~~R~~~  265 (373)
T cd01158         200 GSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGR----------IGIAAQALGI----AQAALDAAVDYAKERKQF  265 (373)
T ss_pred             CCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCccc
Confidence              3445667764   35678888888877665666666          7778888888    5555533         49


Q ss_pred             cceeeeeeccc---ccccccccccC
Q psy5139         194 SLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       194 g~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      |+||.+||.||   +||.+.++++|
T Consensus       266 g~~~~~~~~v~~~la~~~~~l~aa~  290 (373)
T cd01158         266 GKPIADFQGIQFKLADMATEIEAAR  290 (373)
T ss_pred             CCcHHHhHHHHHHHHHHHHHHHHHH
Confidence            99999999999   99999998876

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.

>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5

Probab=99.71  E-value=4.3e-19  Score=145.15  Aligned_cols=196  Identities=19%  Similarity=0.229  Sum_probs=140.2

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|.++.+...+.|++++.+.++++.+..+  .....+..+++++|+++|++.+.+|+.+ +++++|
T Consensus        48 ~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tE  125 (407)
T cd01153          48 AGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQ--GAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTE  125 (407)
T ss_pred             CCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHh--HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence            5999999999999999999999999999999988877655543  3345678899999999999999998865 789999


Q ss_pred             CCCCCCccHH---------------------H---------HHHHHHHHHhhCC------Cc-eeEeeech------hh-
Q psy5139          81 EYGGPGLSFM---------------------T---------DILIVEEIARVDP------SV-SILVDIQN------TL-  116 (216)
Q Consensus        81 ~~gG~~~~~~---------------------~---------~~~v~e~lar~~~------~~-~~~v~~~~------~~-  116 (216)
                      +.+|++...+                     +         +..++  +++++.      ++ .|+|+.+.      .+ 
T Consensus       126 p~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~~~a~~~~~~~~v--~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~  203 (407)
T cd01153         126 PDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLV--LARSEGAPPGVKGLSLFLVPKFLDDGERNGVT  203 (407)
T ss_pred             CCCCCCcccceEEEEECCCCcEEEeeEEEEEeCCCcccccccEEEE--EEeCCCCCCCCCceEEEEEeccCcCCCCCCeE
Confidence            9888764211                     0         01122  455331      22 36777652      22 


Q ss_pred             hHHHHHhcCCH--HHhhhhchhcccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---
Q psy5139         117 VNDLIIKLGTT--EQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---  191 (216)
Q Consensus       117 ~~~~~~~~g~~--~~~~~~l~~~~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---  191 (216)
                      ......++|.+  ...+..|+++.-..++.++.|+......+...|          ..+++..+|.    ++.+++.   
T Consensus       204 i~~~~~~~G~r~t~s~~v~f~~v~Vp~lg~~~~g~~~~~~~l~~~r----------~~~aa~~lG~----a~~al~~a~~  269 (407)
T cd01153         204 VARIEEKMGLHGSPTCELVFDNAKGELIGEEGMGLAQMFAMMNGAR----------LGVGTQGTGL----AEAAYLNALA  269 (407)
T ss_pred             eccchhccCCCCCCeEEEEEcCEEEeeeCCCCccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHH
Confidence            22334455555  345667776543377888888887777777766          8888888888    6666644   


Q ss_pred             ------cccce--------eeeeeccc---ccccccccccC
Q psy5139         192 ------GLSLQ--------ILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 ------~fg~~--------i~~~Q~v~---ad~~~~~~~~r  215 (216)
                            +||+|        |.++|.||   +||.++++++|
T Consensus       270 ~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~  310 (407)
T cd01153         270 YAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSR  310 (407)
T ss_pred             HHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHH
Confidence                  49999        56666676   99999988776

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>KOG0138|consensus

Probab=99.69  E-value=1.2e-18  Score=130.77  Aligned_cols=197  Identities=23%  Similarity=0.298  Sum_probs=131.6

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +|++|.++ +.||-.|.+.+...++..|+.|.+.+...++++++.++...|..+|+++||++|+|.++++.++ ++.++|
T Consensus        98 mGvlG~ti-kGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTE  176 (432)
T KOG0138|consen   98 MGVLGPTI-KGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTE  176 (432)
T ss_pred             cccccCcc-cCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccC
Confidence            57777777 7799999999999999999999999988888888889999999999999999999999999998 579999


Q ss_pred             CCCCCCccHH---------------------------HHHHHHHHHHhh--CCCc-eeEeeechh-hhH-HHHHhcCCHH
Q psy5139          81 EYGGPGLSFM---------------------------TDILIVEEIARV--DPSV-SILVDIQNT-LVN-DLIIKLGTTE  128 (216)
Q Consensus        81 ~~gG~~~~~~---------------------------~~~~v~e~lar~--~~~~-~~~v~~~~~-~~~-~~~~~~g~~~  128 (216)
                      |..|||.+.+                           .+++++  .||-  +..+ .|+++.+.. ... ...-+++-+.
T Consensus       177 Pn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vv--wAr~~t~n~I~GFi~~k~~~GL~apkI~gK~sLRa  254 (432)
T KOG0138|consen  177 PNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVV--WARCETDNKIRGFILEKGMRGLSAPKIEGKFSLRA  254 (432)
T ss_pred             CCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEE--EEecccCCceeeEEEecCCCCCcCCCcCCeeeeee
Confidence            9999998633                           244444  4442  2222 255554321 111 1112222221


Q ss_pred             H--hhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCc----ceeeeeec-cccceee
Q psy5139         129 Q--KEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQ----LKRWMVSC-GLSLQIL  198 (216)
Q Consensus       129 ~--~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~----~~~~~~~~-~fg~~i~  198 (216)
                      .  ....++++   .++++ ....++......          ||-.+..|+-+.+|..+.    +.++.+++ +||+|++
T Consensus       255 s~tG~Ilmd~V~VPeE~~L-Pg~~s~qgpf~c----------LnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~PLA  323 (432)
T KOG0138|consen  255 SATGMILMDGVEVPEENLL-PGASSLQGPFGC----------LNNARYGIAWGALGASEFCLHTARQYTLDRKQFGRPLA  323 (432)
T ss_pred             cccCceeecCCcCChhhcC-CCccccCCchhh----------hhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCCchh
Confidence            1  11222322   22332 111222222333          344449999999998333    23344433 5999999


Q ss_pred             eeeccc---cccccccc
Q psy5139         199 QFQNLS---SDMHMTGL  212 (216)
Q Consensus       199 ~~Q~v~---ad~~~~~~  212 (216)
                      .||.+|   |||.+++.
T Consensus       324 anQL~Q~Kladmltei~  340 (432)
T KOG0138|consen  324 ANQLIQKKLADMLTEIT  340 (432)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            999999   99988764

>KOG0139|consensus

Probab=99.68  E-value=1.8e-16  Score=121.16  Aligned_cols=122  Identities=39%  Similarity=0.612  Sum_probs=106.4

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+...++.+.+.|++++.+||++||++.++....+++|++++.|++++..|+.++.+...++..+|+++|++.|+|...
T Consensus        68 ~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~~  147 (398)
T KOG0139|consen   68 RYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKLT  147 (398)
T ss_pred             cCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccceeEEEecccccchHHHHhCcHHHHhhhcchhh
Confidence            35566889999999999999999999999999999999999999999998898888888899999999999998888765


Q ss_pred             cc-----cccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QT-----DVSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~-----~lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ..     .+++++.|+|.........+ +++|+|||.|.|++++..+.
T Consensus       148 ~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~  195 (398)
T KOG0139|consen  148 GDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEAD  195 (398)
T ss_pred             ccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccc
Confidence            44     36788999998655555544 88999999999999998765

>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C

Probab=99.67  E-value=9.9e-19  Score=141.83  Aligned_cols=196  Identities=14%  Similarity=0.135  Sum_probs=133.3

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCceeeecCCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQE   81 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~e~   81 (216)
                      .||+++.+|++|||.|+++.+...+.|++++.+.+++..+..|. .....+..+++++|++++++.+.++.+++.+++|+
T Consensus        34 ~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~a~tE~  112 (377)
T cd01163          34 SGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-GFVEALLLAGPEQFRKRWFGRVLNGWIFGNAVSER  112 (377)
T ss_pred             CCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHhCCCeEEEeecCC
Confidence            59999999999999999999999999999999999887665554 33457888999999999999999999888888887


Q ss_pred             CCCCCcc-------------------H-----HHHHHHHHHHHhhCC-Cc-eeEeeechh-h-hHHHHHhcCCH--HHhh
Q psy5139          82 YGGPGLS-------------------F-----MTDILIVEEIARVDP-SV-SILVDIQNT-L-VNDLIIKLGTT--EQKE  131 (216)
Q Consensus        82 ~gG~~~~-------------------~-----~~~~~v~e~lar~~~-~~-~~~v~~~~~-~-~~~~~~~~g~~--~~~~  131 (216)
                      ..|+...                   +     ..+++++  .++++. .. .|+|+.+.+ + ......++|.+  ...+
T Consensus       113 ~~~~~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v--~a~~~~~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~  190 (377)
T cd01163         113 GSVRPGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTV--SALDEEGKLVFAAVPTDRPGITVVDDWDGFGQRLTASGT  190 (377)
T ss_pred             CCCCCCCceEEEEecCCEEEEeceEEeecCCccceEEEE--EEEcCCCcEEEEEEeCCCCceeecCCcccccCccCCcce
Confidence            6542100                   1     1122333  455432 23 367776542 2 22223445543  3456


Q ss_pred             hhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec----------cccc---
Q psy5139         132 KYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC----------GLSL---  195 (216)
Q Consensus       132 ~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~----------~fg~---  195 (216)
                      ..|+++   .++.++.++.++. ........+          ..+++..+|.    ++.+++.          .||+   
T Consensus       191 v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~----------l~~aa~~lG~----a~~al~~~~~~~~~R~~~~g~~~~  255 (377)
T cd01163         191 VTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQ----------LVLAAVLAGI----ARAALDDAVAYVRSRTRPWIHSGA  255 (377)
T ss_pred             EEEeeEEECHHHccCCCccccc-cccccHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhcCCCCCcCCc
Confidence            677764   4567777776654 111111222          6667778888    5555433          3665   


Q ss_pred             -eeeeeeccc---ccccccccccC
Q psy5139         196 -QILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       196 -~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                       ++.++|.||   +||.++++++|
T Consensus       256 ~~~~~~~~v~~~la~~~~~l~aar  279 (377)
T cd01163         256 ESARDDPYVQQVVGDLAARLHAAE  279 (377)
T ss_pred             cccccCcHHHHHHHHHHHHHHHHH
Confidence             468899999   99999999887

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.

>KOG0141|consensus

Probab=99.65  E-value=8.1e-16  Score=116.09  Aligned_cols=121  Identities=26%  Similarity=0.485  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccc
Q psy5139          60 QKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQ  139 (216)
Q Consensus        60 ~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~  139 (216)
                      +-+++|+++.+-+++++..||++||++.++.+.+++.|+++|..+..+.....|...+++-+.+.|+++|++.|+|.+.+
T Consensus        75 ~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~s  154 (421)
T KOG0141|consen   75 DLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLIS  154 (421)
T ss_pred             hHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhc
Confidence            45679999999999999999999999999999999999999998776665666667888889999999999999999876


Q ss_pred             cc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         140 TD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       140 ~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      +.      ..+++.|++.....+++++ +++|+|||.|.|+++++.++
T Consensus       155 Ge~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~ad  202 (421)
T KOG0141|consen  155 GEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPDAD  202 (421)
T ss_pred             ccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecCCCCc
Confidence            53      3688999999888888888 88999999999999999876

>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product

Probab=99.65  E-value=2.1e-18  Score=141.35  Aligned_cols=194  Identities=17%  Similarity=0.171  Sum_probs=139.0

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCC----c-eee
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD----L-MGV   76 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~----~-~~~   76 (216)
                      .||+++ +|+++|+.|  ........+.++..+......+..+. .+...|..+|+++| +++++++.+++    + .++
T Consensus        77 ~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~l~~~g~~~~-~~~l~~l~~g~~~~~~~~~~  151 (418)
T cd01154          77 EGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLCPLTMTD-AAVYALRKYGPEEL-KQYLPGLLSDRYKTGLLGGT  151 (418)
T ss_pred             cCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccCcHHHHH-HHHHHHHHhCcHHH-HHHHHHHhCCCcccchhhee
Confidence            488888 777777655  34445566666666544433333333 57778999998886 56999999985    4 478


Q ss_pred             ecCCCCCCCCccHH-------------------------HHHHHHHHHHhhCC------Cce-eEeeech------hh-h
Q psy5139          77 EIPQEYGGPGLSFM-------------------------TDILIVEEIARVDP------SVS-ILVDIQN------TL-V  117 (216)
Q Consensus        77 ~~~e~~gG~~~~~~-------------------------~~~~v~e~lar~~~------~~~-~~v~~~~------~~-~  117 (216)
                      +++||.+|||+..+                         .+..++  ++|+++      +++ |+|+.+.      .+ +
T Consensus       152 ~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a~Ad~~lv--~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i  229 (418)
T cd01154         152 WMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAPLADAALV--LARPEGAPAGARGLSLFLVPRLLEDGTRNGYRI  229 (418)
T ss_pred             eecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCcccCEEEE--EEECCCCCCCCCcEEEEEEeccCCCCCCCCeEe
Confidence            99999999987421                         122333  667652      234 7787643      12 2


Q ss_pred             HHHHHhcCCH--HHhhhhchhcccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec----
Q psy5139         118 NDLIIKLGTT--EQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC----  191 (216)
Q Consensus       118 ~~~~~~~g~~--~~~~~~l~~~~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~----  191 (216)
                      .....++|.+  ...+++|+++.++++|.++.|++.+...++..|          ..+++..+|.    ++++++.    
T Consensus       230 ~~~~~~~G~r~~~~~ev~f~dv~~~~lG~~g~G~~~~~~~l~~~R----------~~~aa~~~G~----a~~al~~a~~y  295 (418)
T cd01154         230 RRLKDKLGTRSVATGEVEFDDAEAYLIGDEGKGIYYILEMLNISR----------LDNAVAALGI----MRRALSEAYHY  295 (418)
T ss_pred             cccccccCCCCCCeEEEEecCcCccccCCCCccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHH
Confidence            2344667776  567889999888899999999998888888887          8888888888    5555432    


Q ss_pred             -----cccceeeeeeccc---ccccccccccCC
Q psy5139         192 -----GLSLQILQFQNLS---SDMHMTGLASRF  216 (216)
Q Consensus       192 -----~fg~~i~~~Q~v~---ad~~~~~~~~r~  216 (216)
                           +||+||.+||.||   +||.++++++|+
T Consensus       296 a~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~  328 (418)
T cd01154         296 ARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATA  328 (418)
T ss_pred             HhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence                 4999999999999   999999998773

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.

>PRK11561 isovaleryl CoA dehydrogenase; Provisional

Probab=99.63  E-value=5e-18  Score=141.40  Aligned_cols=194  Identities=14%  Similarity=0.118  Sum_probs=134.3

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCC---------
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD---------   72 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~---------   72 (216)
                      .||.++.++++++   .+..-...+.+-+-....+ ...+..+...++..+.++++++|+++|+|++.+++         
T Consensus        98 ~g~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~-g~~cp~~mT~~a~~~l~~~~~e~~~~~lp~l~sg~~~~~~~~~~  173 (538)
T PRK11561         98 NRVHNLAWEEDAR---SGAFVARAARFMLHAQVEA-GTLCPITMTFAATPLLLQMLPAPFQDWLTPLLSDRYDSHLLPGG  173 (538)
T ss_pred             cCCccCCCCCccC---chHHHHHHHHHHHHhhhhH-HhhchHHHHHHHHHHHHhcCHHHHHHHHHHHhCCCcccccccch
Confidence            3677778877765   2222222233333222111 11122222345556777888999999999999985         


Q ss_pred             ----c-eeeecCCCCCCCCccHH-------------------------HHHHHHHHHHhhCCCce-eEeeechh------
Q psy5139          73 ----L-MGVEIPQEYGGPGLSFM-------------------------TDILIVEEIARVDPSVS-ILVDIQNT------  115 (216)
Q Consensus        73 ----~-~~~~~~e~~gG~~~~~~-------------------------~~~~v~e~lar~~~~~~-~~v~~~~~------  115 (216)
                          + .+++++||.+|||+..+                         .+..++  ++|++.+++ |+|+...+      
T Consensus       174 ~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiSa~~AD~~lV--lArt~~Gls~FlVp~~~p~g~~nG  251 (538)
T PRK11561        174 QKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFSVPQSDAHLV--LAQAKGGLSCFFVPRFLPDGQRNA  251 (538)
T ss_pred             hhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEEchhhCEEEE--EEEECCceEEEEEECCCCCCCCCc
Confidence                2 47899999999996321                         133444  677766665 78876432      


Q ss_pred             h-hHHHHHhcCCH--HHhhhhchhcccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec-
Q psy5139         116 L-VNDLIIKLGTT--EQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC-  191 (216)
Q Consensus       116 ~-~~~~~~~~g~~--~~~~~~l~~~~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~-  191 (216)
                      + +.....++|.+  ...++.|+++..+++|+++.|++.+...++.+|          ..++..++|.    ++.+++. 
T Consensus       252 v~i~rl~~klG~r~~~t~ev~f~dv~~~llG~~g~G~~~i~~~l~~~R----------l~~a~~a~G~----a~~Al~~A  317 (538)
T PRK11561        252 IRLERLKDKLGNRSNASSEVEFQDAIGWLLGEEGEGIRLILKMGGMTR----------FDCALGSHGL----MRRAFSVA  317 (538)
T ss_pred             eEEecccccccCCCCceeEEEECCHHHHHCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHH
Confidence            2 23456788877  356788999888899999999999888888887          8888888998    6665533 


Q ss_pred             --------cccceeeeeeccc---ccccccccccC
Q psy5139         192 --------GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 --------~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                              +||+||.+||.||   +||.+++|++|
T Consensus       318 ~~yA~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar  352 (538)
T PRK11561        318 IYHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQT  352 (538)
T ss_pred             HHHHHhCccCCCccccCHHHHHHHHHHHHHHHHHH
Confidence                    4999999999999   99999999876

>KOG0140|consensus

Probab=99.59  E-value=2.8e-15  Score=113.14  Aligned_cols=125  Identities=26%  Similarity=0.301  Sum_probs=107.0

Q ss_pred             cCChhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhc
Q psy5139          55 LGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYL  134 (216)
Q Consensus        55 ~g~~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l  134 (216)
                      .-+.|+|.+++++..+.|+.+..+||.+||++++..+..++.|+++..+.++...+..+ .+...++..+|+++|++.|+
T Consensus        55 Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCtg~~~~I~~~-~l~~~pi~~~gneeqKkk~l  133 (408)
T KOG0140|consen   55 DKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCTGIQTAISIH-NLAAWPIILSGNEEQKKKYL  133 (408)
T ss_pred             cccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccchhHHHHHhcc-chhhhhehhcCcHHHHHhhh
Confidence            34679999999999999999999999999999999999999999999988866544444 46778889999999999999


Q ss_pred             hhcc------cccccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         135 PRLA------QTDVSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       135 ~~~~------~~~lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      +++.      +..+.+|+.|+++..-....++ +|.|+|||+|.||+++..+.
T Consensus       134 g~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G~an  186 (408)
T KOG0140|consen  134 GRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHAN  186 (408)
T ss_pred             hhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCCccc
Confidence            8764      3457899999998666666666 99999999999999998754

>PLN02636 acyl-coenzyme A oxidase

Probab=99.54  E-value=8.6e-17  Score=137.96  Aligned_cols=196  Identities=19%  Similarity=0.250  Sum_probs=138.6

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .|++++.+|++      ++.+...+.|++++.+.+++..+..|..+....|..+|+++|+++|+|.+.+++.+ +++++|
T Consensus       108 ~g~~~~~~~~~------~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TE  181 (686)
T PLN02636        108 AGIRPMKYLVE------DPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTE  181 (686)
T ss_pred             cCccccccccC------CHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccC
Confidence            47788888876      78889999999999888776656667667788899999999999999999999986 689999


Q ss_pred             CCCCCCccHHH---------------------------------HHHHHHHHHhhC-----------CCce-eEeeech-
Q psy5139          81 EYGGPGLSFMT---------------------------------DILIVEEIARVD-----------PSVS-ILVDIQN-  114 (216)
Q Consensus        81 ~~gG~~~~~~~---------------------------------~~~v~e~lar~~-----------~~~~-~~v~~~~-  114 (216)
                      +.+|||+..++                                 +..++  +||++           .++. |+|+... 
T Consensus       182 pghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV--~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~  259 (686)
T PLN02636        182 LHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATV--FARLKLPTHDSKGVSDMGVHAFIVPIRDM  259 (686)
T ss_pred             CCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEE--EEEecCCCCCccCCCCCCeeEEEEecCcc
Confidence            99999874211                                 12233  56543           1233 7787541 


Q ss_pred             -------hh-hHHHHHhcCCH--HHhhhhchhc---ccccccc----------------cccchhhhhhhhccccCCcee
Q psy5139         115 -------TL-VNDLIIKLGTT--EQKEKYLPRL---AQTDVSR----------------TSRGYKALEWHAFYGRTDSLP  165 (216)
Q Consensus       115 -------~~-~~~~~~~~g~~--~~~~~~l~~~---~~~~lg~----------------~~~g~~~~~~~~~~~~~~~~~  165 (216)
                             ++ +.....++|.+  ......|+++   .+++|+.                ++.|+......+..+|     
T Consensus       260 ~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R-----  334 (686)
T PLN02636        260 KTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGR-----  334 (686)
T ss_pred             ccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHH-----
Confidence                   11 22334566654  3445677765   4566642                2457777777777777     


Q ss_pred             eccceeeeecCcccCCCcceeee-----eeccccce------eeeeeccc---ccccccccccC
Q psy5139         166 LNDHLSHISSGCVGFDGQLKRWM-----VSCGLSLQ------ILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       166 l~g~k~~va~~~~g~~~~~~~~~-----~~~~fg~~------i~~~Q~v~---ad~~~~~~~~r  215 (216)
                           +.+++.++|....+...+     .+.+||+|      |.+||.+|   ++|.+.++++|
T Consensus       335 -----~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La~~la~~~a~~  393 (686)
T PLN02636        335 -----VGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLMPMLASTYAFH  393 (686)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence                 999999988833322111     24469999      99999999   99998888754

>PLN02312 acyl-CoA oxidase

Probab=99.50  E-value=3e-16  Score=134.37  Aligned_cols=199  Identities=15%  Similarity=0.173  Sum_probs=136.2

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .|+++..+|++  |.+ +....+++.|++++.+.++...+..|..+....|..+|+++|+++|++.+.+++.+ +++++|
T Consensus       117 ~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TE  193 (680)
T PLN02312        117 RGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTE  193 (680)
T ss_pred             hhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecC
Confidence            47888889985  333 67788999999999887765556666667778899999999999999999999986 689999


Q ss_pred             CCCCCCccHHH---------------------------------HHHHHHHHHhhCC-----Cce-eEeee---c---hh
Q psy5139          81 EYGGPGLSFMT---------------------------------DILIVEEIARVDP-----SVS-ILVDI---Q---NT  115 (216)
Q Consensus        81 ~~gG~~~~~~~---------------------------------~~~v~e~lar~~~-----~~~-~~v~~---~---~~  115 (216)
                      +.+||++..++                                 +..++  +||+..     ++. |+|+.   +   .+
T Consensus       194 pghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV--~Arl~~~~~~~Gv~~FlV~ird~~~~~~P  271 (680)
T PLN02312        194 LGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIV--FSQLHINGKNEGVHAFIAQIRDQDGNICP  271 (680)
T ss_pred             CCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEE--EEEECCCCCCCCeEEEEEeecCCCCCCCC
Confidence            99999864211                                 12223  455421     233 66652   1   11


Q ss_pred             --hhHHHHHhcCCH--HHhhhhchhc---ccccccc----------------cccchhhhhhhhccccCCceeeccceee
Q psy5139         116 --LVNDLIIKLGTT--EQKEKYLPRL---AQTDVSR----------------TSRGYKALEWHAFYGRTDSLPLNDHLSH  172 (216)
Q Consensus       116 --~~~~~~~~~g~~--~~~~~~l~~~---~~~~lg~----------------~~~g~~~~~~~~~~~~~~~~~l~g~k~~  172 (216)
                        .+.....++|.+  +.....|+++   .+++|+.                ++.|+..+...+...|          +.
T Consensus       272 GV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R----------~~  341 (680)
T PLN02312        272 NIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGR----------VT  341 (680)
T ss_pred             CEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHH----------HH
Confidence              122334566644  3445677775   4666663                4567777667777777          99


Q ss_pred             eecCcccCCCcceeee-----eeccccc----e---eeeeeccc---ccccccccccC
Q psy5139         173 ISSGCVGFDGQLKRWM-----VSCGLSL----Q---ILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       173 va~~~~g~~~~~~~~~-----~~~~fg~----~---i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      +++.++|....+...+     .+.+||+    |   |.+||.+|   ++|.+++++++
T Consensus       342 iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~  399 (680)
T PLN02312        342 IAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMS  399 (680)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHH
Confidence            9999998833322112     2445995    4   99999999   88888887643

>KOG1469|consensus

Probab=99.38  E-value=7.5e-16  Score=114.29  Aligned_cols=202  Identities=17%  Similarity=0.223  Sum_probs=144.2

Q ss_pred             CccccccCCCCC--CCCCCCHHHHHHHHHHHHccCCChhHHHHHHH--hhHHHHHHhcCChhHHHHHHHHHHhCCce-ee
Q psy5139           2 TTLLGVEIPQEY--GGPGLSFMTDILIVEEIARVDPSVSILVDIQN--TLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GV   76 (216)
Q Consensus         2 ~G~~~~~~p~~~--GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~--~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~   76 (216)
                      .|+|.+.+|+.-  =|.|++.++...++|.++++-.. |-++..+.  ..-...|.+||++||+.+|+-++.+|... ++
T Consensus        39 eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~A-PeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~irScF  117 (392)
T KOG1469|consen   39 EGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFA-PEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGNIRSCF  117 (392)
T ss_pred             cchHHhhhHHHHHhhccCccchhHHHHHHHhcccccc-chhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCCceeeE
Confidence            588999998542  25899999999999999987544 34443211  12233689999999999999999999986 78


Q ss_pred             ecCCCC-CCCCccHHH---------------------------HHHHHHHHHhhCCC-------ce-eEeeechh--hhH
Q psy5139          77 EIPQEY-GGPGLSFMT---------------------------DILIVEEIARVDPS-------VS-ILVDIQNT--LVN  118 (216)
Q Consensus        77 ~~~e~~-gG~~~~~~~---------------------------~~~v~e~lar~~~~-------~~-~~v~~~~~--~~~  118 (216)
                      +++||. ..||..+++                           .+.++  +.+++..       .+ ++|+.+++  ...
T Consensus       118 aMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~--mGkt~~~~~~rhkQqSmiLVpM~TpGvkii  195 (392)
T KOG1469|consen  118 AMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIF--MGKTDNTSASRHKQQSMILVPMNTPGVKII  195 (392)
T ss_pred             eecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEE--ecccCCCccchhhcccEEEEecCCCCeeEe
Confidence            999997 667776544                           11222  5555543       23 57777654  345


Q ss_pred             HHHHhcCCHH----Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCccee----e
Q psy5139         119 DLIIKLGTTE----QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKR----W  187 (216)
Q Consensus       119 ~~~~~~g~~~----~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~----~  187 (216)
                      +++..+|..+    ..+..|+++   +.|.+-.++.||.+.+-.+-.+|          +.-+...+|.+++..+    +
T Consensus       196 RpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGR----------iHHcMRliG~aERal~lm~~R  265 (392)
T KOG1469|consen  196 RPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGR----------IHHCMRLIGLAERALQLMKER  265 (392)
T ss_pred             eeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcH----------HHHHHHHhhHHHHHHHHHHHH
Confidence            6666677653    234556654   56778888999999888888887          8888888888444222    2


Q ss_pred             ee-eccccceeeeeeccc---ccccccccccCC
Q psy5139         188 MV-SCGLSLQILQFQNLS---SDMHMTGLASRF  216 (216)
Q Consensus       188 ~~-~~~fg~~i~~~Q~v~---ad~~~~~~~~r~  216 (216)
                      ++ +.+|||+|.+|-.+.   |...+++|.+||
T Consensus       266 ~~sRiaFgk~l~q~~s~~~diA~sRveiEqaRL  298 (392)
T KOG1469|consen  266 ALSRIAFGKKLVQHGSVAHDIAESRVEIEQARL  298 (392)
T ss_pred             HHHHHHhcchhhhcchHHHHHHHHHhHhhhhhh
Confidence            22 346999999999998   888899998886

>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1

Probab=99.36  E-value=8.9e-13  Score=88.80  Aligned_cols=71  Identities=44%  Similarity=0.748  Sum_probs=63.7

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD   72 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~   72 (216)
                      .||+++.+|+++||.++++.+.+.+.|++++.+.+++..+..+..++...|.++++++|+++|+|++.+|+
T Consensus        43 ~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge  113 (113)
T PF02771_consen   43 AGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE  113 (113)
T ss_dssp             TTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred             HHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence            59999999999999999999999999999999988877677666677788999999999999999999875

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....

>cd01159 NcnH Naphthocyclinone hydroxylase

Probab=99.31  E-value=1.3e-14  Score=117.56  Aligned_cols=195  Identities=14%  Similarity=0.091  Sum_probs=117.4

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-e-eec-
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-G-VEI-   78 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~-~~~-   78 (216)
                      .||+++.+|++|||.|+++.+.+.+.|++++.+++++++...+. .....+..++++++++.|++.. + +.. + ... 
T Consensus        34 ~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~~~  110 (370)
T cd01159          34 IGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THSRMLAAFPPEAQEEVWGDGP-D-TLLAGSYAPG  110 (370)
T ss_pred             CChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHhCCHHHHHHHhCCCC-C-ceEEeeecCC
Confidence            59999999999999999999999999999999998876544332 4445566778888877666542 1 111 1 111 


Q ss_pred             ---CCCCCCCCcc----H-----HHHHHHHHHHHhhCC-----Cce-eEeeechhhhHHHHHhcCCH--HHhhhhchhc-
Q psy5139          79 ---PQEYGGPGLS----F-----MTDILIVEEIARVDP-----SVS-ILVDIQNTLVNDLIIKLGTT--EQKEKYLPRL-  137 (216)
Q Consensus        79 ---~e~~gG~~~~----~-----~~~~~v~e~lar~~~-----~~~-~~v~~~~~~~~~~~~~~g~~--~~~~~~l~~~-  137 (216)
                         ....+|.-++    +     ..+++++  +++++.     +++ |+|+.+..........+|.+  ...+..|+++ 
T Consensus       111 t~A~~~~~gy~lnG~K~~it~~~~ad~~~v--~a~~~~~~~~~~~~~~lV~~~Gv~~~~~~~~~G~r~~~s~~v~f~~v~  188 (370)
T cd01159         111 GRAERVDGGYRVSGTWPFASGCDHADWILV--GAIVEDDDGGPLPRAFVVPRAEYEIVDTWHVVGLRGTGSNTVVVDDVF  188 (370)
T ss_pred             ceeEEeCCeEEEeccccCccCCCcCceeEe--eeECCCCCCCCcceEEEEEhHHCEEecccccccccccCCCcEEEcceE
Confidence               1111221111    1     1234444  666431     233 67776522222334556655  3456778775 


Q ss_pred             --ccccccccc------cchh---hhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeecc---------c---c
Q psy5139         138 --AQTDVSRTS------RGYK---ALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCG---------L---S  194 (216)
Q Consensus       138 --~~~~lg~~~------~g~~---~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~~---------f---g  194 (216)
                        .+++++..+      .|++   .........+          ..+++..+|.    ++++++.+         |   |
T Consensus       189 Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~aa~~lG~----a~~~l~~~~~~~~~R~~~~~~g  254 (370)
T cd01159         189 VPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFP----------LSFAAVSLGA----AEGALAEFLELAGKRVRQYGAA  254 (370)
T ss_pred             cCccceecccccccCCCCCCCCccccCchHHHHH----------HHHHHHHHHH----HHHHHHHHHHHhccCcccCCCc
Confidence              456665432      1211   0011111222          5677788888    55554332         3   7


Q ss_pred             ceeeeeeccc---ccccccccccC
Q psy5139         195 LQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       195 ~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      +||++||.||   +||.+.++++|
T Consensus       255 ~~i~~~~~v~~~la~~~~~l~~a~  278 (370)
T cd01159         255 VKMAEAPITQLRLAEAAAELDAAR  278 (370)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHH
Confidence            8999999999   99999999876

Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.

>cd01151 GCD Glutaryl-CoA dehydrogenase

Probab=99.30  E-value=3.3e-12  Score=104.07  Aligned_cols=121  Identities=26%  Similarity=0.397  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      +++.++++++.+.|++++ +|+++||.+.+..+...+++++++.+.++++.+..+.......+..++++++++.|++++.
T Consensus        44 ~~~~~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~  122 (386)
T cd01151          44 KFDRKIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLA  122 (386)
T ss_pred             CCCHHHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHh
Confidence            467889999999999999 9999999999999999999999998887543333333344456778999999999999887


Q ss_pred             ccc-c-----cccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD-V-----SRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~-l-----g~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++. +     .+++.|.+......+..+ +++|+|||+|.|++++..++
T Consensus       123 ~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~~Ad  171 (386)
T cd01151         123 SGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIAD  171 (386)
T ss_pred             CCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCCcCC
Confidence            664 2     455566665433334444 78999999999999887543

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.

>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed

Probab=99.25  E-value=7.4e-12  Score=108.49  Aligned_cols=123  Identities=23%  Similarity=0.355  Sum_probs=94.1

Q ss_pred             hhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhh-HHHHHhcCCHHHhhhhchh
Q psy5139          58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLV-NDLIIKLGTTEQKEKYLPR  136 (216)
Q Consensus        58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~-~~~~~~~g~~~~~~~~l~~  136 (216)
                      .+++.++|+.+.+.|++++.+||++||.+.+..+...+++++++.+.+++..+..++... ...+..+|+++|++.|++.
T Consensus       108 ~~~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~  187 (777)
T PRK09463        108 ADLPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPR  187 (777)
T ss_pred             cCCCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            467788999999999999999999999999999999999999988776543222332232 3467889999999999999


Q ss_pred             ccccc------ccccccchhhhh--hhh---cccc-CC---ceeeccceeeeecCcccC
Q psy5139         137 LAQTD------VSRTSRGYKALE--WHA---FYGR-TD---SLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       137 ~~~~~------lg~~~~g~~~~~--~~~---~~~~-~~---~~~l~g~k~~va~~~~g~  180 (216)
                      +.++.      +.+++.|++...  ++.   ...+ ++   +|+|||+|.|++++..++
T Consensus       188 La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad  246 (777)
T PRK09463        188 LARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIAT  246 (777)
T ss_pred             HhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccC
Confidence            87664      357777877532  211   2222 34   599999999999998765

>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit

Probab=99.25  E-value=1.3e-11  Score=100.29  Aligned_cols=122  Identities=13%  Similarity=0.183  Sum_probs=92.4

Q ss_pred             ChhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchh
Q psy5139          57 TTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPR  136 (216)
Q Consensus        57 ~~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~  136 (216)
                      ..+++.++|+.+.+.|++++.+||++||.+.+..+...+.|++++.+....+ +.. .......+..+|++++++.|++.
T Consensus        35 ~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~~~~~~-~~~-~~~~~~~l~~~g~~~qk~~~L~~  112 (378)
T TIGR03203        35 KGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKALVLEPY-LAT-VVIGGGFLRHAGSAAQKAAHLPG  112 (378)
T ss_pred             cCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcccchHH-HHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence            3457788999999999999999999999999999999999999986543221 111 11233456778999999999999


Q ss_pred             ccccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         137 LAQTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       137 ~~~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      +.++.      +.+++.|++.....++..+ +++|+|||+|.||+++..++
T Consensus       113 l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~Ad  163 (378)
T TIGR03203       113 IIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETAD  163 (378)
T ss_pred             HhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCccCC
Confidence            87663      2466677665433344444 77899999999999987655

Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>PLN02519 isovaleryl-CoA dehydrogenase

Probab=99.25  E-value=1.5e-11  Score=100.76  Aligned_cols=118  Identities=28%  Similarity=0.466  Sum_probs=91.2

Q ss_pred             HHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccccc-
Q psy5139          63 KYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD-  141 (216)
Q Consensus        63 ~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~-  141 (216)
                      ++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++++....+.......+..++++++++.|++.+.++. 
T Consensus        63 ~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~  142 (404)
T PLN02519         63 NLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEH  142 (404)
T ss_pred             HHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCe
Confidence            3789999999999999999999999999999999999999988765433333333456777899999999999887653 


Q ss_pred             -----ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         142 -----VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       142 -----lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                           +.+++.|.+......+..+ +++|+|||+|.|+++...++
T Consensus       143 ~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a~~ad  187 (404)
T PLN02519        143 VGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQ  187 (404)
T ss_pred             eEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecCCCcCC
Confidence                 2456666554333333444 78999999999999877654

>PRK13026 acyl-CoA dehydrogenase; Reviewed

Probab=99.24  E-value=8.8e-12  Score=107.76  Aligned_cols=124  Identities=27%  Similarity=0.334  Sum_probs=94.0

Q ss_pred             ChhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhh-HHHHHhcCCHHHhhhhch
Q psy5139          57 TTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLV-NDLIIKLGTTEQKEKYLP  135 (216)
Q Consensus        57 ~~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~-~~~~~~~g~~~~~~~~l~  135 (216)
                      ..++++++|+.+.+.|++++.+||++||.+.+..+...+++++++.+.+.++.+..++... ...+..+|+++|++.|++
T Consensus       106 ~~~~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP  185 (774)
T PRK13026        106 RKDLPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLP  185 (774)
T ss_pred             hcCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhH
Confidence            3467889999999999999999999999999999999999999887766543222222222 346788999999999999


Q ss_pred             hccccc------ccccccchhhhh--hhh---cccc-CC---ceeeccceeeeecCcccC
Q psy5139         136 RLAQTD------VSRTSRGYKALE--WHA---FYGR-TD---SLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       136 ~~~~~~------lg~~~~g~~~~~--~~~---~~~~-~~---~~~l~g~k~~va~~~~g~  180 (216)
                      .+.++.      +.+++.|++...  ++.   ...+ ++   +|+|||+|.||+++..++
T Consensus       186 ~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad  245 (774)
T PRK13026        186 RLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVAT  245 (774)
T ss_pred             HHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEeecCccccC
Confidence            987764      357777877532  221   1223 44   599999999999988765

>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit

Probab=99.23  E-value=2.8e-11  Score=98.84  Aligned_cols=116  Identities=20%  Similarity=0.336  Sum_probs=90.0

Q ss_pred             HHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccccc-
Q psy5139          63 KYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD-  141 (216)
Q Consensus        63 ~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~-  141 (216)
                      ++|+.+.+.|++++.+||++||.+.+..+...+.|++++.+.+..+....  ......+..+|++++++.|++.+.++. 
T Consensus        44 ~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg~~~~~~~~~~~~--~~~~~~l~~~g~~~q~~~~L~~i~~G~~  121 (395)
T TIGR03204        44 TWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQSAPAPQPLAFGV--SMVGPVIYTFGNEEQKKRFLPRIANVDD  121 (395)
T ss_pred             HHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhcCCCccchhHh--HhhHHHHHHhCCHHHHHHHHHHHhCCch
Confidence            79999999999999999999999999999999999999988775543221  122345677899999999999877653 


Q ss_pred             -----ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         142 -----VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       142 -----lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                           +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       122 ~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~a~~Ad  166 (395)
T TIGR03204       122 WWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHAD  166 (395)
T ss_pred             heEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecCCccCC
Confidence                 3466667665333333334 77899999999999887765

Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.

>cd01156 IVD Isovaleryl-CoA dehydrogenase

Probab=99.23  E-value=1e-11  Score=100.91  Aligned_cols=122  Identities=28%  Similarity=0.488  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++++.+..+.......+..++++++++.|++++.
T Consensus        33 ~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~  112 (376)
T cd01156          33 EFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLI  112 (376)
T ss_pred             CCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHh
Confidence            35678999999999999999999999999999999999999999888665333332333456778899999999999876


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.++..|.+......+..+ +++|+|||+|.|+++...++
T Consensus       113 ~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~  161 (376)
T cd01156         113 SGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDAD  161 (376)
T ss_pred             CCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCC
Confidence            653      2355556554433344444 78999999999999987654

Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.

>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase

Probab=99.23  E-value=1.3e-11  Score=100.19  Aligned_cols=122  Identities=22%  Similarity=0.316  Sum_probs=93.9

Q ss_pred             hhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139          58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL  137 (216)
Q Consensus        58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~  137 (216)
                      ...+.+.++.+.+.|++++.+||++||.+.++.+...+.+++++.+.+++++...+ ......+..+|++++++.|++++
T Consensus        31 ~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~  109 (372)
T TIGR03207        31 RVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMSYVNLLA-SLNGQILAQHARPEIAKPWLGQL  109 (372)
T ss_pred             CCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHHHHHHhh-hHHHHHHHHhCCHHHHHHHHHHH
Confidence            34677899999999999999999999999999999999999999988765432211 23334566789999999999988


Q ss_pred             cccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         138 AQTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       138 ~~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      .++.      +.+++.|.+.....++..+ +++|+|||+|.|+++...++
T Consensus       110 ~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad  159 (372)
T TIGR03207       110 IAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQAD  159 (372)
T ss_pred             hCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCC
Confidence            6653      2456666665444444445 77899999999999887654

Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.

>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated

Probab=99.22  E-value=1.6e-11  Score=99.84  Aligned_cols=120  Identities=21%  Similarity=0.268  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      .++.++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++.++...+  .....+..++++++++.|++.+.
T Consensus        37 ~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~--~~~~~l~~~g~~e~~~~~l~~~~  114 (380)
T PRK03354         37 VYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLP--GGFNTFLREGTQEQIDKIMAFRG  114 (380)
T ss_pred             CCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCcchHHHHHhc--ccHHHHHHhCCHHHHHHHHHHHh
Confidence            4677899999999999999999999999999999999999999988754322221  12345677899999999999876


Q ss_pred             ccc-c-----cccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD-V-----SRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~-l-----g~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++. +     .+++.|.+......+..+ +++|+|||+|.|+++...++
T Consensus       115 ~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~~ad  163 (380)
T PRK03354        115 TGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTP  163 (380)
T ss_pred             CCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCCcCC
Confidence            654 2     455666555333333334 78899999999999987643

>cd01157 MCAD Medium chain acyl-CoA dehydrogenase

Probab=99.20  E-value=1.6e-11  Score=99.86  Aligned_cols=121  Identities=26%  Similarity=0.328  Sum_probs=91.1

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      .++.+.++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+.+..+ ......+..++++++++.|++.+.
T Consensus        32 ~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~  110 (378)
T cd01157          32 EYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQTAIEAN-SLGQMPVIISGNDEQKKKYLGRMT  110 (378)
T ss_pred             CCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHHHHHHhh-hhhHHHHHHhCCHHHHHHHHHHHh
Confidence            4667899999999999999999999999999999999999999887754333222 222334566799999999999876


Q ss_pred             ccc-c-----cccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD-V-----SRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~-l-----g~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++. +     .+++.|.+......+..+ +++|+|||+|.|+++...++
T Consensus       111 ~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad  159 (378)
T cd01157         111 EEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN  159 (378)
T ss_pred             CCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCC
Confidence            653 2     355566555333334444 77899999999999887654

MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.

>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26

Probab=99.20  E-value=8.3e-11  Score=95.68  Aligned_cols=122  Identities=25%  Similarity=0.332  Sum_probs=93.5

Q ss_pred             hhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139          58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL  137 (216)
Q Consensus        58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~  137 (216)
                      .+++.++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++.+.+... ......+..+|++++++.|++++
T Consensus        34 ~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~~~~~l~~~  112 (380)
T cd01152          34 REDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAPVPFNQIGI-DLAGPTILAYGTDEQKRRFLPPI  112 (380)
T ss_pred             chHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCCcccchhhH-HHHHHHHHHhCCHHHHHHHhHHH
Confidence            45788999999999999999999999999999999999999999988766541111 23345677889999999999998


Q ss_pred             cccc-c-----cccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         138 AQTD-V-----SRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       138 ~~~~-l-----g~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      .++. +     .+++.|.+........++ +++|+|||+|.|+++...++
T Consensus       113 ~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ad  162 (380)
T cd01152         113 LSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYAD  162 (380)
T ss_pred             hCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccccC
Confidence            7654 2     244555554333334444 77999999999999876654

Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>cd01162 IBD Isobutyryl-CoA dehydrogenase

Probab=99.19  E-value=2.1e-11  Score=99.00  Aligned_cols=121  Identities=25%  Similarity=0.330  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++++++..+. .....+..++++++++.|++++.
T Consensus        32 ~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~  110 (375)
T cd01162          32 HFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLC  110 (375)
T ss_pred             CCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHh
Confidence            35677999999999999999999999999999999999999998887654443332 33445677899999999999886


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|.+......+..+ +++|+|||+|.|+++...++
T Consensus       111 ~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad  159 (375)
T cd01162         111 TMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD  159 (375)
T ss_pred             CCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCC
Confidence            653      2456666655443344444 77899999999999887654

Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.

>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2

Probab=99.19  E-value=9.8e-11  Score=95.70  Aligned_cols=121  Identities=18%  Similarity=0.174  Sum_probs=87.2

Q ss_pred             hhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCC-ceeEeeechhhhHHHHHhcCCHHHhhhhchh
Q psy5139          58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPS-VSILVDIQNTLVNDLIIKLGTTEQKEKYLPR  136 (216)
Q Consensus        58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~-~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~  136 (216)
                      ++..+++++.+.+.|++++.+|+++||.+.+..+...+.|++++.+.. ..+.+..........+..++++++++.|++.
T Consensus        40 ~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~  119 (394)
T cd01155          40 PPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEP  119 (394)
T ss_pred             chhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHH
Confidence            445568888888999999999999999999999999999999997532 2232222111233467788999999999998


Q ss_pred             cccccc------cccc-cchhhhhhhhcccc-CCceeeccceeeeecCcc
Q psy5139         137 LAQTDV------SRTS-RGYKALEWHAFYGR-TDSLPLNDHLSHISSGCV  178 (216)
Q Consensus       137 ~~~~~l------g~~~-~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~  178 (216)
                      +.++.+      .+++ .|.+......+..+ +++|+|||+|.|+++...
T Consensus       120 l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~  169 (394)
T cd01155         120 LLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGAGD  169 (394)
T ss_pred             HhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEEEEcCCCC
Confidence            766532      3443 34444332333444 788999999999998754

FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.

>cd01160 LCAD Long chain acyl-CoA dehydrogenase

Probab=99.19  E-value=2.2e-11  Score=98.72  Aligned_cols=121  Identities=25%  Similarity=0.415  Sum_probs=90.9

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.+++++.+.. ++.+..+.......+..++++++++.|++.+.
T Consensus        30 ~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~  108 (372)
T cd01160          30 EVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GPGLSLHTDIVSPYITRAGSPEQKERVLPQMV  108 (372)
T ss_pred             CCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            46678999999999999999999999999999999999999995443 33333332234456777899999999999876


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|.+.........+ +++|+|||+|.|+++...++
T Consensus       109 ~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad  157 (372)
T cd01160         109 AGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLAD  157 (372)
T ss_pred             CCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccC
Confidence            553      2456666655333334444 77999999999999887644

LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.

>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional

Probab=99.18  E-value=2.8e-11  Score=99.35  Aligned_cols=122  Identities=20%  Similarity=0.374  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..++++++.+.+.|++++.+|+++||.+.+..+...+.+++++.++++.+.+..+.......+..++++++++.|++++.
T Consensus        68 ~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~  147 (410)
T PTZ00461         68 HFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVL  147 (410)
T ss_pred             CCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHh
Confidence            46678999999999999999999999999999999999999998876443222222233445667899999999999876


Q ss_pred             ccc------ccccccchhhhhhhhcccc-C-CceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-T-DSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~-~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|.+.....++.++ + ++|+|||+|.|++++..++
T Consensus       148 ~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~~Ad  197 (410)
T PTZ00461        148 TGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVAD  197 (410)
T ss_pred             CCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCccCC
Confidence            553      2456667665444444444 3 4799999999999987644

>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C

Probab=99.18  E-value=2.4e-11  Score=98.71  Aligned_cols=121  Identities=17%  Similarity=0.180  Sum_probs=90.5

Q ss_pred             hhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139          58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL  137 (216)
Q Consensus        58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~  137 (216)
                      ..++.++++.+.+.|++++.+||++||.+.+..+...+++++++.+.++++++..+.. ....+..+|++++++.|++.+
T Consensus        21 ~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~-~~~~l~~~g~~~~~~~~l~~~   99 (377)
T cd01163          21 RGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFG-FVEALLLAGPEQFRKRWFGRV   99 (377)
T ss_pred             CCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-HHHHHHhcCcHHHHHHHHHHH
Confidence            3467889999999999999999999999999999999999999998887654433322 235667789999999999887


Q ss_pred             cccc-----ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         138 AQTD-----VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       138 ~~~~-----lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      .++.     +.+++.|. .........+ +++|+|||+|.|++++..++
T Consensus       100 ~~g~~~~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad  147 (377)
T cd01163         100 LNGWIFGNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSD  147 (377)
T ss_pred             hCCCeEEEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccce
Confidence            6553     23444332 1111222333 67899999999999887654

DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.

>PRK12341 putative acyl-CoA dehydrogenase; Provisional

Probab=99.17  E-value=5.2e-11  Score=96.91  Aligned_cols=120  Identities=19%  Similarity=0.328  Sum_probs=91.3

Q ss_pred             hhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139          58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL  137 (216)
Q Consensus        58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~  137 (216)
                      ..++.++++.+.+.|++.+.+|+++||.+.+..+...+.+++++.+.+. +++.  .......+..+|++++++.+++.+
T Consensus        36 ~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~~-~~~~--~~~~~~~l~~~g~~~q~~~~l~~~  112 (381)
T PRK12341         36 GTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKCGAPA-FLIT--NGQCIHSMRRFGSAEQLRKTAEST  112 (381)
T ss_pred             CCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhcChhH-HHHh--hhhhHHHHHHhCCHHHHHHHhHHH
Confidence            3467789999999999999999999999999999999999999987762 2221  123334567789999999999876


Q ss_pred             -cccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         138 -AQTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       138 -~~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                       .++.      +.+++.|.+.........+ +++|+|||+|.|+++...++
T Consensus       113 ~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~Ad  163 (381)
T PRK12341        113 LETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYP  163 (381)
T ss_pred             hhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccCC
Confidence             3543      2456667665443333334 78899999999999887644

>cd01150 AXO Peroxisomal acyl-CoA oxidase

Probab=99.16  E-value=2.7e-13  Score=115.74  Aligned_cols=184  Identities=16%  Similarity=0.155  Sum_probs=120.0

Q ss_pred             CHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCCCCCCCCccHHH------
Q psy5139          19 SFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQEYGGPGLSFMT------   91 (216)
Q Consensus        19 ~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e~~gG~~~~~~~------   91 (216)
                      ++.+...+.|++++.+.+.+..+..|..+....|..+|+++|+++|++.+.+++.+ +++++|+..|+++..++      
T Consensus        80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d  159 (610)
T cd01150          80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD  159 (610)
T ss_pred             CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence            56788889999999887765445556667777899999999999999999999876 68999999999864221      


Q ss_pred             ---------------------------HHHHHHHHHhhC-----CCc-eeEeeech--------hh-hHHHHHhcCCHH-
Q psy5139          92 ---------------------------DILIVEEIARVD-----PSV-SILVDIQN--------TL-VNDLIIKLGTTE-  128 (216)
Q Consensus        92 ---------------------------~~~v~e~lar~~-----~~~-~~~v~~~~--------~~-~~~~~~~~g~~~-  128 (216)
                                                 +..++  +||..     .++ .|+|+...        ++ +.....++|.+. 
T Consensus       160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV--~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~  237 (610)
T cd01150         160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVV--FAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGV  237 (610)
T ss_pred             CCCCeEEECCCCCCceEECccCcccCCCEEEE--EEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCC
Confidence                                       11222  44431     123 36776421        11 222334555442 


Q ss_pred             -Hhhhhchhc---ccccccc----------------cccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeee
Q psy5139         129 -QKEKYLPRL---AQTDVSR----------------TSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWM  188 (216)
Q Consensus       129 -~~~~~l~~~---~~~~lg~----------------~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~  188 (216)
                       .....|+++   .+++++.                ++.|+..+...+..+|          +.+++.++|....+...+
T Consensus       238 dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gR----------l~ia~~a~g~~~~al~iA  307 (610)
T cd01150         238 DNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGR----------VGLIYDAAMSLKKAATIA  307 (610)
T ss_pred             CeEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHHH
Confidence             334566654   3555654                4455655655556566          888888888732222212


Q ss_pred             -----eeccccce-------eeeeeccc---cccccccccc
Q psy5139         189 -----VSCGLSLQ-------ILQFQNLS---SDMHMTGLAS  214 (216)
Q Consensus       189 -----~~~~fg~~-------i~~~Q~v~---ad~~~~~~~~  214 (216)
                           .+.+||+|       |.+||.+|   ++|.+.+++.
T Consensus       308 i~Ya~~R~qfg~~~~~~e~~I~~~q~~q~rL~~~la~~~a~  348 (610)
T cd01150         308 IRYSAVRRQFGPKPSDPEVQILDYQLQQYRLFPQLAAAYAF  348 (610)
T ss_pred             HHHHHeeeecCCCCCCCcchhhccHhHHHHHHHHHHHHHHH
Confidence                 24469999       99999999   7777777654

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.

>KOG0138|consensus

Probab=99.16  E-value=7.5e-11  Score=89.31  Aligned_cols=132  Identities=25%  Similarity=0.389  Sum_probs=104.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCH
Q psy5139          48 VNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT  127 (216)
Q Consensus        48 ~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~  127 (216)
                      ...+...+..++++.+++|++.+.|.++..+. -||-.+++.+.+.++..++.|.|.+..-.+..+...+..++..+|++
T Consensus        75 ~Prvtea~r~e~F~~~i~pemGsmGvlG~tik-GYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE  153 (432)
T KOG0138|consen   75 MPRVTEANRNEVFDREIIPEMGSMGVLGPTIK-GYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSE  153 (432)
T ss_pred             hhHHHHHhhhccCChhhhhhhhccccccCccc-CcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCH
Confidence            33445566778888899999988888775553 47778888889999999999999986655555666788899999999


Q ss_pred             HHhhhhchhccccc------ccccccchhh--hhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         128 EQKEKYLPRLAQTD------VSRTSRGYKA--LEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       128 ~~~~~~l~~~~~~~------lg~~~~g~~~--~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      +|++.|+|.++.+.      +.++++|++.  +.+.+.+.. +..|.|||+|.|+++..+++
T Consensus       154 ~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aD  215 (432)
T KOG0138|consen  154 EQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMAD  215 (432)
T ss_pred             HHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccc
Confidence            99999999987653      3577888886  455555543 44599999999999999987

>PLN02526 acyl-coenzyme A oxidase

Probab=99.14  E-value=6.3e-11  Score=97.34  Aligned_cols=121  Identities=30%  Similarity=0.414  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ++++++++++.+.|++++.+ |++||.+.+..+...+++++++.+.++..++..+.......+..++++++++.|++.+.
T Consensus        60 ~~p~~~~~~l~~~G~~~~~v-~~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~  138 (412)
T PLN02526         60 EFPFHIIPKLGSLGIAGGTI-KGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLA  138 (412)
T ss_pred             CCCHHHHHHHHHCCCCcCcc-cccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHh
Confidence            46678999999999999888 88999999999999999999998877542222232334446778899999999999886


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|.+......+..+ +++|+|||+|.|+++...++
T Consensus       139 ~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~~Ad  187 (412)
T PLN02526        139 QLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFAD  187 (412)
T ss_pred             CCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCCCccC
Confidence            653      2355556554443444444 78999999999999887654

>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase

Probab=99.09  E-value=1.1e-10  Score=95.95  Aligned_cols=121  Identities=29%  Similarity=0.424  Sum_probs=89.8

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+|+++||.+.+..+...++|++++ +.++++.+..+.......+..++++++++.|++.+.
T Consensus        56 ~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~  134 (409)
T cd01161          56 KIPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLA  134 (409)
T ss_pred             CCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHh
Confidence            4667899999999999999999999999999999999999999 776554333332232334667899999999999876


Q ss_pred             ccc------ccccccchhhh--hhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKAL--EWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~--~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|.+..  .+...... +++|+|||+|.|+++...++
T Consensus       135 ~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad  185 (409)
T cd01161         135 SGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIAD  185 (409)
T ss_pred             CCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCC
Confidence            653      24565665543  23333322 45799999999999987644

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.

>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases

Probab=99.09  E-value=1.3e-10  Score=94.35  Aligned_cols=122  Identities=38%  Similarity=0.601  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.+.++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++.+....+.......+..++++++++.|++++.
T Consensus        30 ~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~  109 (373)
T cd01158          30 EFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLA  109 (373)
T ss_pred             CCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHh
Confidence            35678999999999999999999999999999999999999999988765443333234456678899999999998876


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|.+.........+ +++|+|||+|.|+++...++
T Consensus       110 ~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad  158 (373)
T cd01158         110 TGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEAD  158 (373)
T ss_pred             CCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCC
Confidence            652      2344555544322333334 77999999999999886644

Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.

>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]

Probab=99.03  E-value=9.6e-10  Score=89.88  Aligned_cols=124  Identities=31%  Similarity=0.450  Sum_probs=94.8

Q ss_pred             ChhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeec---hhhhHHHHHhcCCHHHhhhh
Q psy5139          57 TTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQ---NTLVNDLIIKLGTTEQKEKY  133 (216)
Q Consensus        57 ~~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~---~~~~~~~~~~~g~~~~~~~~  133 (216)
                      .++.+.++++.+.+.|++++.+|+++||.+.+......+.+++++.+....+....+   .......+..+|++++++.|
T Consensus        37 ~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~  116 (393)
T COG1960          37 DERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRY  116 (393)
T ss_pred             cccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhCcchhhhHHHhccccccchHHHHHcCCHHHHHHh
Confidence            456667899999999999999999999999999999999999999988654322111   12333456678999999999


Q ss_pred             chhcccc-c-----ccccccchhhhhhh-hcccc-CCceeeccceeeeecCcccC
Q psy5139         134 LPRLAQT-D-----VSRTSRGYKALEWH-AFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       134 l~~~~~~-~-----lg~~~~g~~~~~~~-~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.+..+ .     ++++..|++..... ....+ +++|+|||+|.|++++..++
T Consensus       117 l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~is~~~~ad  171 (393)
T COG1960         117 LPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVAD  171 (393)
T ss_pred             chhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEEcCCCCCC
Confidence            9988765 2     46777788765433 34444 55599999999999998765

>PTZ00456 acyl-CoA dehydrogenase; Provisional

Probab=99.02  E-value=4.2e-10  Score=96.27  Aligned_cols=116  Identities=22%  Similarity=0.319  Sum_probs=83.4

Q ss_pred             HHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccccc
Q psy5139          62 EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD  141 (216)
Q Consensus        62 ~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~  141 (216)
                      ++.++.+.+.|++++.+||++||.+++......+.|.+++.+.++...... .......+..+|+++|++.|++++.++.
T Consensus       102 ~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l-~~ga~~~L~~~Gs~eqk~~~Lp~l~sGe  180 (622)
T PTZ00456        102 KEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGL-SIGAANTLMAWGSEEQKEQYLTKLVSGE  180 (622)
T ss_pred             HHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence            468999999999999999999999998775555555566666543221111 1123456788999999999999987764


Q ss_pred             ------ccccccchhhhhhhhcccc-CC-ceeeccceeeeecCcc
Q psy5139         142 ------VSRTSRGYKALEWHAFYGR-TD-SLPLNDHLSHISSGCV  178 (216)
Q Consensus       142 ------lg~~~~g~~~~~~~~~~~~-~~-~~~l~g~k~~va~~~~  178 (216)
                            +.+++.|++.....++..+ ++ +|+|||+|.||+++..
T Consensus       181 ~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~K~fIt~g~~  225 (622)
T PTZ00456        181 WSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDH  225 (622)
T ss_pred             hhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeEEEEecCCch
Confidence                  3567777775333333333 44 5999999999998765

>PTZ00457 acyl-CoA dehydrogenase; Provisional

Probab=99.02  E-value=7.9e-10  Score=92.25  Aligned_cols=108  Identities=22%  Similarity=0.254  Sum_probs=77.7

Q ss_pred             CceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcccccc-----cccc
Q psy5139          72 DLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDV-----SRTS  146 (216)
Q Consensus        72 ~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l-----g~~~  146 (216)
                      |++++.+||++||.+++..+...+.|++++.+.+..+.+..+......++..+|++++++.|++.+.++.+     -+++
T Consensus        64 Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~AltE~  143 (520)
T PTZ00457         64 NLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWATEEG  143 (520)
T ss_pred             CccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            88899999999999999999999999999977654322212323444567778999999999999877642     1346


Q ss_pred             cchhhhhhhhcccc--CCceeeccceeeeecCcccC
Q psy5139         147 RGYKALEWHAFYGR--TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       147 ~g~~~~~~~~~~~~--~~~~~l~g~k~~va~~~~g~  180 (216)
                      .|++.....++..+  +++|+|||+|.++ ++..++
T Consensus       144 aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad  178 (520)
T PTZ00457        144 CGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASAT  178 (520)
T ss_pred             CCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhc
Confidence            67665433333333  4579999999966 555544

>KOG0137|consensus

Probab=99.00  E-value=8.2e-10  Score=90.47  Aligned_cols=122  Identities=26%  Similarity=0.358  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..++..+..+.+.|++++.+|++++|.+..+.+...+.|...-.|.+..+.+..|..+....+..+|+++|++.|+++++
T Consensus       109 ~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~La  188 (634)
T KOG0137|consen  109 KIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLA  188 (634)
T ss_pred             ccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhh
Confidence            34567788899999999999999999999999999888877665776655555555566777888999999999999987


Q ss_pred             ccc------ccccccchhh--hhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKA--LEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~--~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.++..|++.  ...+....+ +++|+|||.|+|++++..+.
T Consensus       189 Sg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Ad  239 (634)
T KOG0137|consen  189 SGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLAD  239 (634)
T ss_pred             cCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccce
Confidence            764      4567777665  344444444 67899999999999998765

>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5

Probab=99.00  E-value=6.1e-10  Score=91.41  Aligned_cols=116  Identities=25%  Similarity=0.352  Sum_probs=87.7

Q ss_pred             HHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccccc
Q psy5139          62 EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD  141 (216)
Q Consensus        62 ~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~  141 (216)
                      .++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++.++...+  .....+..++++++++.|++++.++.
T Consensus        39 ~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~i~~G~  116 (407)
T cd01153          39 KEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQ--GAAATLLAHGTEAQREKWIPRLAEGE  116 (407)
T ss_pred             HHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHh--HHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence            6779999999999999999999999999999999999999887754332222  22345677899999999999887663


Q ss_pred             ------ccccccchhhhhhhhcccc--CCceeeccceeeeecCccc
Q psy5139         142 ------VSRTSRGYKALEWHAFYGR--TDSLPLNDHLSHISSGCVG  179 (216)
Q Consensus       142 ------lg~~~~g~~~~~~~~~~~~--~~~~~l~g~k~~va~~~~g  179 (216)
                            +.+++.|.+......+..+  +++|+|||+|.|++++..+
T Consensus       117 ~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~~~a  162 (407)
T cd01153         117 WTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHD  162 (407)
T ss_pred             eeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCCCcc
Confidence                  2466666654333333333  4579999999999987654

Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.

>PTZ00460 acyl-CoA dehydrogenase; Provisional

Probab=98.94  E-value=3.1e-12  Score=109.53  Aligned_cols=158  Identities=18%  Similarity=0.208  Sum_probs=103.1

Q ss_pred             HHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCCCCCCCCccHHH-----------------------------
Q psy5139          42 DIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQEYGGPGLSFMT-----------------------------   91 (216)
Q Consensus        42 ~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e~~gG~~~~~~~-----------------------------   91 (216)
                      ..|..+....|..+|+++|+++|+|.+.+++.+ +++++|+.+|+|+..++                             
T Consensus        96 ~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~~  175 (646)
T PTZ00460         96 TVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGEL  175 (646)
T ss_pred             EeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCCC
Confidence            345556667788999999999999999999976 68999999999864221                             


Q ss_pred             ----HHHHHHHHHhhC-----CCce-eEeeec--------hhh-hHHHHHhcCCH--HHhhhhchhc---ccccccc---
Q psy5139          92 ----DILIVEEIARVD-----PSVS-ILVDIQ--------NTL-VNDLIIKLGTT--EQKEKYLPRL---AQTDVSR---  144 (216)
Q Consensus        92 ----~~~v~e~lar~~-----~~~~-~~v~~~--------~~~-~~~~~~~~g~~--~~~~~~l~~~---~~~~lg~---  144 (216)
                          +..++  +||+.     .++. |+|+..        .++ +.....++|.+  +.....|+++   .+++|+.   
T Consensus       176 g~~A~~~vV--~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlLg~~~~  253 (646)
T PTZ00460        176 GFLCNFALV--YAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLARYIK  253 (646)
T ss_pred             CCCCCEEEE--EEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhCCcccc
Confidence                12223  45542     1233 777621        112 22344666654  3345677765   4667764   


Q ss_pred             ---ccc----c-hhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeee---------eccccc------eeeeee
Q psy5139         145 ---TSR----G-YKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMV---------SCGLSL------QILQFQ  201 (216)
Q Consensus       145 ---~~~----g-~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~---------~~~fg~------~i~~~Q  201 (216)
                         ++.    | ++.....+...|          ..+++.++|.    ++.++         +.+||+      ||++||
T Consensus       254 v~~~G~~~~~g~~~~~~~~l~~~R----------~~iaa~~~g~----a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ  319 (646)
T PTZ00460        254 VSEDGQVERQGNPKVSYASMMYMR----------NLIIDQYPRF----AAQALTVAIRYSIYRQQFTNDNKQENSVLEYQ  319 (646)
T ss_pred             cCCCCccccCCcHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHccccCCCCCCCCCcHhhhH
Confidence               231    3 444444444455          7777777776    33333         446998      999999


Q ss_pred             ccc---ccccccccccC
Q psy5139         202 NLS---SDMHMTGLASR  215 (216)
Q Consensus       202 ~v~---ad~~~~~~~~r  215 (216)
                      .+|   ++|.+.++++|
T Consensus       320 ~~Q~rLa~~la~~~A~r  336 (646)
T PTZ00460        320 TQQQKLLPLLAEFYACI  336 (646)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            999   99999988876

>cd01159 NcnH Naphthocyclinone hydroxylase

Probab=98.86  E-value=2.2e-09  Score=87.02  Aligned_cols=116  Identities=14%  Similarity=0.111  Sum_probs=83.1

Q ss_pred             ChhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchh
Q psy5139          57 TTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPR  136 (216)
Q Consensus        57 ~~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~  136 (216)
                      ..+++.++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++++++.... .....+..++++.+++.|++.
T Consensus        20 ~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   98 (370)
T cd01159          20 ARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-THSRMLAAFPPEAQEEVWGDG   98 (370)
T ss_pred             cCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHhCCHHHHHHHhCCC
Confidence            3457888999999999999999999999999999999999999999888665433221 223345566777888777764


Q ss_pred             cccccccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         137 LAQTDVSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       137 ~~~~~lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      .. +.+.    |....  .....+ +++|+|||+|.|++++..++
T Consensus        99 ~~-~~~~----g~~~~--~t~A~~~~~gy~lnG~K~~it~~~~ad  136 (370)
T cd01159          99 PD-TLLA----GSYAP--GGRAERVDGGYRVSGTWPFASGCDHAD  136 (370)
T ss_pred             CC-ceEE----eeecC--CceeEEeCCeEEEeccccCccCCCcCc
Confidence            32 1111    11111  123333 77899999999999887654

Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.

>PLN02876 acyl-CoA dehydrogenase

Probab=98.83  E-value=6.5e-09  Score=92.30  Aligned_cols=116  Identities=22%  Similarity=0.214  Sum_probs=82.9

Q ss_pred             HHHHHHHH-hCCceeeecCCC------------------------CCCCCccHHHHHHHHHHHHhhCCCc-eeEeeechh
Q psy5139          62 EKYLPRLA-QTDLMGVEIPQE------------------------YGGPGLSFMTDILIVEEIARVDPSV-SILVDIQNT  115 (216)
Q Consensus        62 ~~~l~~l~-~g~~~~~~~~e~------------------------~gG~~~~~~~~~~v~e~lar~~~~~-~~~v~~~~~  115 (216)
                      .+.|+++. +.|++++.+||+                        +||.+.+..+...+.|++++.+.+. .+.+..+..
T Consensus       444 ~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~  523 (822)
T PLN02876        444 EERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDT  523 (822)
T ss_pred             hHHHHHHHHHcCcccCCCCchhhhhhhhcccccccccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCccc
Confidence            35677765 899999999995                        8999999999999999999975432 121211111


Q ss_pred             hhHHHHHhcCCHHHhhhhchhccccc------ccccc-cchhhhhhhhcccc-CCceeeccceeeeecCc
Q psy5139         116 LVNDLIIKLGTTEQKEKYLPRLAQTD------VSRTS-RGYKALEWHAFYGR-TDSLPLNDHLSHISSGC  177 (216)
Q Consensus       116 ~~~~~~~~~g~~~~~~~~l~~~~~~~------lg~~~-~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~  177 (216)
                      .....+..+|+++|++.|++.+.++.      +.+++ .|++.....++..+ +++|+|||+|.+++++.
T Consensus       524 ~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~  593 (822)
T PLN02876        524 GNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAM  593 (822)
T ss_pred             ccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCC
Confidence            23356778899999999999987663      23443 44554333334444 77899999999999874

>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1

Probab=98.64  E-value=6.4e-09  Score=69.85  Aligned_cols=82  Identities=38%  Similarity=0.644  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..++++++.+.+.|++++.+|+++||.+.+..+...+.+++++.+.++.+....+.......+.++|++++++.|++++.
T Consensus        31 ~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~  110 (113)
T PF02771_consen   31 RFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLA  110 (113)
T ss_dssp             SCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHh
Confidence            57788999999999999999999999999999999999999999887655444443455578899999999999999876


Q ss_pred             cc
Q psy5139         139 QT  140 (216)
Q Consensus       139 ~~  140 (216)
                      +|
T Consensus       111 ~G  112 (113)
T PF02771_consen  111 SG  112 (113)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....

>cd00567 ACAD Acyl-CoA dehydrogenase

Probab=98.57  E-value=3.8e-10  Score=89.93  Aligned_cols=153  Identities=25%  Similarity=0.369  Sum_probs=99.5

Q ss_pred             hHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCCCCCCCCccHH-------------------------HHHHHHHHHH
Q psy5139          47 LVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQEYGGPGLSFM-------------------------TDILIVEEIA  100 (216)
Q Consensus        47 ~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e~~gG~~~~~~-------------------------~~~~v~e~la  100 (216)
                      ++...|..+++++|++++++.+.+++.+ +++++|+..|++....                         .+.+++  .+
T Consensus        43 ~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv--~a  120 (327)
T cd00567          43 LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIV--LA  120 (327)
T ss_pred             hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEE--EE
Confidence            3556788899999999999999998865 7889998877654211                         122232  34


Q ss_pred             hhCC------Cc-eeEeeechh-h-hHHHHHhcCCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceee
Q psy5139         101 RVDP------SV-SILVDIQNT-L-VNDLIIKLGTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPL  166 (216)
Q Consensus       101 r~~~------~~-~~~v~~~~~-~-~~~~~~~~g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l  166 (216)
                      +.+.      .. .|+++.+.. + .......+|.+  ......|+++   .+..++.++.|+......+...+      
T Consensus       121 ~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~------  194 (327)
T cd00567         121 RTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGR------  194 (327)
T ss_pred             EeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHH------
Confidence            4321      22 256665432 1 11222223333  2344566664   34567777777765555556665      


Q ss_pred             ccceeeeecCcccCCCcceeeeeec---------cccceeeeeeccc---ccccccccccC
Q psy5139         167 NDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       167 ~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                          ..+++..+|.    ++.+++.         +||+||.+||.||   ++|.+.++++|
T Consensus       195 ----~~~aa~~~G~----a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~  247 (327)
T cd00567         195 ----LLLAAVALGA----ARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAAR  247 (327)
T ss_pred             ----HHHHHHHHHH----HHHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHHHHHH
Confidence                7778888888    6655533         4999999999999   99999888776

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob

>PLN02636 acyl-coenzyme A oxidase

Probab=98.54  E-value=2.1e-07  Score=80.74  Aligned_cols=114  Identities=22%  Similarity=0.298  Sum_probs=83.2

Q ss_pred             hHH-HHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139          59 EQK-EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL  137 (216)
Q Consensus        59 ~~~-~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~  137 (216)
                      +++ +++++.+.+.+++++.+|++      +......+.|++++.+.+.++.+..+..+....+..+|+++|++.|++.+
T Consensus        95 e~~~~~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~  168 (686)
T PLN02636         95 ELCMRQLTGLVREAGIRPMKYLVE------DPAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGI  168 (686)
T ss_pred             hhHHHHHHHHHHhcCccccccccC------CHHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHH
Confidence            444 55666777888888877865      55667778888998877654434444445567788899999999999998


Q ss_pred             cccc------ccccccchhh--hhhhhcccc-CCceeec-----cceeeeecCcc
Q psy5139         138 AQTD------VSRTSRGYKA--LEWHAFYGR-TDSLPLN-----DHLSHISSGCV  178 (216)
Q Consensus       138 ~~~~------lg~~~~g~~~--~~~~~~~~~-~~~~~l~-----g~k~~va~~~~  178 (216)
                      .++.      +.++++|++.  +.+++.+.+ ++.|+||     |+|+|++++..
T Consensus       169 ~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~  223 (686)
T PLN02636        169 DNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAV  223 (686)
T ss_pred             hCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcc
Confidence            6653      3577888876  455555544 6789999     99999998864

>KOG1469|consensus

Probab=98.54  E-value=9.9e-08  Score=71.62  Aligned_cols=127  Identities=19%  Similarity=0.139  Sum_probs=87.3

Q ss_pred             hcCChhHHHHHHHHHHhCCceeeecCCCC--CCCCccHHHHHHHHHHHHhhCCC-ceeEeeechhhhHHHHHhcCCHHHh
Q psy5139          54 KLGTTEQKEKYLPRLAQTDLMGVEIPQEY--GGPGLSFMTDILIVEEIARVDPS-VSILVDIQNTLVNDLIIKLGTTEQK  130 (216)
Q Consensus        54 ~~g~~~~~~~~l~~l~~g~~~~~~~~e~~--gG~~~~~~~~~~v~e~lar~~~~-~~~~v~~~~~~~~~~~~~~g~~~~~  130 (216)
                      ++..+.+.+++-+.....|++++.+|+..  -|.+++.+++..++|.+.|.-.. -.|-+...+.-....+.++|+++|+
T Consensus        22 rWt~~p~iekLKE~aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQk  101 (392)
T KOG1469|consen   22 RWTKPPVIEKLKEMAKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQK  101 (392)
T ss_pred             cCCCCchHHHHHHHHHhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHH
Confidence            45555555555555556677788777653  57788999999999998876332 2344433333455677899999999


Q ss_pred             hhhchhcccccc------cccc-cchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         131 EKYLPRLAQTDV------SRTS-RGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       131 ~~~l~~~~~~~l------g~~~-~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ..|+.++.++.+      .++. ..++..+-.....| ++.|+|||+|+|++++.--.
T Consensus       102 s~WL~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~Pk  159 (392)
T KOG1469|consen  102 SQWLIPLLEGNIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPK  159 (392)
T ss_pred             hhHhHHHhcCCceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCc
Confidence            999998876654      2332 23344444445556 77899999999999987655

>PLN02312 acyl-CoA oxidase

Probab=98.38  E-value=9.5e-07  Score=76.62  Aligned_cols=115  Identities=19%  Similarity=0.229  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      +...+.+.++.+.++....+||.+  .+ +......+.|++++.+.++.+.+..+..+....+..+|+++|++.|++.+.
T Consensus       105 ~~~~~~~~~l~~~g~~~~~~pe~g--~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~~~  181 (680)
T PLN02312        105 EITMKRILYLLERGVFRGWLTETG--PE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTE  181 (680)
T ss_pred             HhHHHHHHHHHHhhhcCCCCCCCC--Cc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHh
Confidence            344566777888888888888853  22 466677888899988776543333443455667888999999999999887


Q ss_pred             ccc------ccccccchhh--hhhhhcccc-CCceeec-----cceeeeecC
Q psy5139         139 QTD------VSRTSRGYKA--LEWHAFYGR-TDSLPLN-----DHLSHISSG  176 (216)
Q Consensus       139 ~~~------lg~~~~g~~~--~~~~~~~~~-~~~~~l~-----g~k~~va~~  176 (216)
                      ++.      +.++++|++.  +.+++.+.. ++.|+||     |+|+|++++
T Consensus       182 ~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a  233 (680)
T PLN02312        182 DYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGA  233 (680)
T ss_pred             CCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCC
Confidence            653      3577888775  455555543 5689999     799999987

>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product

Probab=98.37  E-value=1.9e-06  Score=71.10  Aligned_cols=112  Identities=16%  Similarity=0.132  Sum_probs=73.8

Q ss_pred             HHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeee-chhhhHHHHHhcCCHHHhhhhchhcccc
Q psy5139          62 EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDI-QNTLVNDLIIKLGTTEQKEKYLPRLAQT  140 (216)
Q Consensus        62 ~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~-~~~~~~~~~~~~g~~~~~~~~l~~~~~~  140 (216)
                      +++++.+.+.|+.++ +++++++.+  ......+.+.++..+...  .++. ........+..+|+++++ .|++.+.++
T Consensus        68 ~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~l~~~g~~~~~-~~l~~l~~g  141 (418)
T cd01154          68 HALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGL--LCPLTMTDAAVYALRKYGPEELK-QYLPGLLSD  141 (418)
T ss_pred             HHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhc--cCcHHHHHHHHHHHHHhCcHHHH-HHHHHHhCC
Confidence            678889999999988 777766544  233334444465554332  2221 123456778888988764 588887655


Q ss_pred             -----c-----ccccccchhhhhhhhcccc--CCceeeccceeeeecCcccC
Q psy5139         141 -----D-----VSRTSRGYKALEWHAFYGR--TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       141 -----~-----lg~~~~g~~~~~~~~~~~~--~~~~~l~g~k~~va~~~~g~  180 (216)
                           .     +.+++.|++.....++..+  +++|+|||+|.|+++. .++
T Consensus       142 ~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad  192 (418)
T cd01154         142 RYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LAD  192 (418)
T ss_pred             CcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccC
Confidence                 2     3577788877554444444  4689999999999988 654

AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.

>PLN02443 acyl-coenzyme A oxidase

Probab=98.34  E-value=2.1e-09  Score=92.50  Aligned_cols=46  Identities=20%  Similarity=0.246  Sum_probs=39.2

Q ss_pred             HHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCCCCCCCCcc
Q psy5139          43 IQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQEYGGPGLS   88 (216)
Q Consensus        43 ~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e~~gG~~~~   88 (216)
                      .|..+....|..+|+++|+++|+|.+.+++.+ +++++|+.+|+++.
T Consensus       101 ~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~  147 (664)
T PLN02443        101 LHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQ  147 (664)
T ss_pred             ehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchh
Confidence            34446667788999999999999999999976 68999999999864

>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1

Probab=97.47  E-value=0.00012  Score=41.65  Aligned_cols=39  Identities=15%  Similarity=0.078  Sum_probs=28.0

Q ss_pred             ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         142 VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       142 lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      +.|++.|.+.........+ +++|+|||+|.+++++..+.
T Consensus         4 ~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~   43 (52)
T PF02770_consen    4 LTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDAD   43 (52)
T ss_dssp             --BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTES
T ss_pred             EcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccC
Confidence            3466677776555556655 88899999999999987655

3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....

>PRK11561 isovaleryl CoA dehydrogenase; Provisional

Probab=97.43  E-value=0.00051  Score=58.34  Aligned_cols=112  Identities=15%  Similarity=0.124  Sum_probs=62.8

Q ss_pred             HHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHH-HhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccccc
Q psy5139          63 KYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEI-ARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD  141 (216)
Q Consensus        63 ~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~l-ar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~  141 (216)
                      ++...+.+.++.+..++++.+ ... .+.. .+.+-+ +..+..  ..++........++...+++++++.|++.+.++.
T Consensus        90 ~~~~~~~~~g~~~~~~~~~~~-~~~-~~~~-~~~~~l~~~~~~g--~~cp~~mT~~a~~~l~~~~~e~~~~~lp~l~sg~  164 (538)
T PRK11561         90 LLMQGLCANRVHNLAWEEDAR-SGA-FVAR-AARFMLHAQVEAG--TLCPITMTFAATPLLLQMLPAPFQDWLTPLLSDR  164 (538)
T ss_pred             HHHHHHHHcCCccCCCCCccC-chH-HHHH-HHHHHHHhhhhHH--hhchHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence            455666777887777765443 111 1111 111112 222221  2333322233345556688889999999876542


Q ss_pred             -------------------ccccccchhhhhhhhcccc--CCceeeccceeeeecCcccC
Q psy5139         142 -------------------VSRTSRGYKALEWHAFYGR--TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       142 -------------------lg~~~~g~~~~~~~~~~~~--~~~~~l~g~k~~va~~~~g~  180 (216)
                                         +.+++.|++.....+...+  +++|+|||+|+|+++ ..++
T Consensus       165 ~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiSa-~~AD  223 (538)
T PRK11561        165 YDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFSV-PQSD  223 (538)
T ss_pred             cccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEEc-hhhC
Confidence                               3466778876555445544  467999999999994 4433

>cd01150 AXO Peroxisomal acyl-CoA oxidase

Probab=97.39  E-value=0.00047  Score=59.66  Aligned_cols=89  Identities=18%  Similarity=0.209  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccccc-c-----cccccchhh--hhhhhcccc
Q psy5139          89 FMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD-V-----SRTSRGYKA--LEWHAFYGR  160 (216)
Q Consensus        89 ~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~-l-----g~~~~g~~~--~~~~~~~~~  160 (216)
                      ..+...+.|++++.|.+..+.+..+..+....+..+|++++++.|++.+.++. +     .++++|++.  +.+++.+..
T Consensus        81 ~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~  160 (610)
T cd01150          81 PEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDP  160 (610)
T ss_pred             HHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEECC
Confidence            34555667788887776544344444456677888999999999999886653 3     467788775  445554433


Q ss_pred             -CCceeec-----cceeeeecCc
Q psy5139         161 -TDSLPLN-----DHLSHISSGC  177 (216)
Q Consensus       161 -~~~~~l~-----g~k~~va~~~  177 (216)
                       .++|+||     |+|+|+++..
T Consensus       161 ~t~efvLntp~~~g~K~wi~~~~  183 (610)
T cd01150         161 LTQEFVINTPDFTATKWWPGNLG  183 (610)
T ss_pred             CCCeEEECCCCCCceEECccCcc
Confidence             3789999     9999999764

Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.

>PTZ00460 acyl-CoA dehydrogenase; Provisional

Probab=96.56  E-value=0.0035  Score=54.62  Aligned_cols=61  Identities=23%  Similarity=0.291  Sum_probs=46.4

Q ss_pred             hhhHHHHHhcCCHHHhhhhchhccccc------ccccccchhh--hhhhhcccc-CCceeec-----cceeeeec
Q psy5139         115 TLVNDLIIKLGTTEQKEKYLPRLAQTD------VSRTSRGYKA--LEWHAFYGR-TDSLPLN-----DHLSHISS  175 (216)
Q Consensus       115 ~~~~~~~~~~g~~~~~~~~l~~~~~~~------lg~~~~g~~~--~~~~~~~~~-~~~~~l~-----g~k~~va~  175 (216)
                      .+....+..+|+++|++.|++.+.++.      +.++++|++.  +.+++.+.+ +++|+||     |+|.|+++
T Consensus       100 ~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~  174 (646)
T PTZ00460        100 AMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGE  174 (646)
T ss_pred             hhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCC
Confidence            344566788899999999999987653      3477888775  455555543 6789998     99999996

>cd00567 ACAD Acyl-CoA dehydrogenase

Probab=96.47  E-value=0.003  Score=50.32  Aligned_cols=64  Identities=30%  Similarity=0.376  Sum_probs=44.8

Q ss_pred             hHHHHHhcCCHHHhhhhchhccccc-c-----cccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         117 VNDLIIKLGTTEQKEKYLPRLAQTD-V-----SRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       117 ~~~~~~~~g~~~~~~~~l~~~~~~~-l-----g~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ....+..+|++++++.+++.+.++. +     .+++.|.+.........+ +++|+|||+|.|+++...++
T Consensus        44 ~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad  114 (327)
T cd00567          44 GAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDAD  114 (327)
T ss_pred             chHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCC
Confidence            3456677899999999999887642 2     345555544433334444 78999999999999887544

Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob

>PLN02443 acyl-coenzyme A oxidase

Probab=96.23  E-value=0.0078  Score=52.67  Aligned_cols=65  Identities=22%  Similarity=0.227  Sum_probs=48.4

Q ss_pred             echhhhHHHHHhcCCHHHhhhhchhccccc------ccccccchhh--hhhhhcccc-CCceeec-----cceeeeecC
Q psy5139         112 IQNTLVNDLIIKLGTTEQKEKYLPRLAQTD------VSRTSRGYKA--LEWHAFYGR-TDSLPLN-----DHLSHISSG  176 (216)
Q Consensus       112 ~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~------lg~~~~g~~~--~~~~~~~~~-~~~~~l~-----g~k~~va~~  176 (216)
                      .+..+....+..+|+++|++.|++.+.++.      +.++++|++.  +.+++++.+ +++|+||     |+|+|+++.
T Consensus       101 ~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~  179 (664)
T PLN02443        101 LHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGL  179 (664)
T ss_pred             ehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCC
Confidence            333455667888899999999999886543      2467888775  455555554 6789998     999999876

>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1

Probab=94.83  E-value=0.00022  Score=50.03  Aligned_cols=56  Identities=16%  Similarity=0.127  Sum_probs=45.6

Q ss_pred             ccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccceeeeeeccc---ccccccccc
Q psy5139         146 SRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQILQFQNLS---SDMHMTGLA  213 (216)
Q Consensus       146 ~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~i~~~Q~v~---ad~~~~~~~  213 (216)
                      ++|++.+...+..+|          ..+++..+|.    ++.+++.         .||+|+.+||.++   +|+..++++
T Consensus         1 g~G~~~~~~~l~~~R----------~~~~~~~~g~----~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a   66 (150)
T PF00441_consen    1 GQGWAVALDTLNHER----------LMIAAMALGI----ARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEA   66 (150)
T ss_dssp             TBHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhh
Confidence            468888888888888          8888888888    6666543         3999999999999   999888877


Q ss_pred             cC
Q psy5139         214 SR  215 (216)
Q Consensus       214 ~r  215 (216)
                      +|
T Consensus        67 ~~   68 (150)
T PF00441_consen   67 MR   68 (150)
T ss_dssp             HH
T ss_pred             hh
Confidence            65

3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....

>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A

Probab=90.54  E-value=0.51  Score=32.01  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=26.3

Q ss_pred             HHHHhhHHHHHHhcCChhHHHHHHHHHHhCCc
Q psy5139          42 DIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDL   73 (216)
Q Consensus        42 ~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~   73 (216)
                      ..|..+..+.|...|++||.++|+|...+...
T Consensus        93 ~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I  124 (125)
T PF14749_consen   93 GLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI  124 (125)
T ss_dssp             HHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence            35778899999999999999999999876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
2jif_A	404	Structure Of Human Short-Branched Chain Acyl-Coa De		8e-18
3gqt_A	399	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		2e-12
3gqt_A	399	Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro		9e-12
3eom_A	396	2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy		3e-12
3eom_A	396	2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy		1e-11
3d6b_A	395	2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena		3e-12
3d6b_A	395	2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena		1e-11
2eba_A	385	Crystal Structure Of The Putative Glutaryl-coa Dehy		2e-10
1ivh_A	394	Structure Of Human Isovaleryl-coa Dehydrogenase At		1e-09
1ivh_A	394	Structure Of Human Isovaleryl-coa Dehydrogenase At		2e-09
2ix5_A	436	Short Chain Specific Acyl-Coa Oxidase From Arabidop		2e-08
2ix6_A	449	Short Chain Specific Acyl-Coa Oxidase From Arabidop		2e-08
1ws9_A	387	Crystal Structure Of Project Id Tt0172 From Thermus		5e-08
2vig_A	391	Crystal Structure Of Human Short-Chain Acyl Coa Deh		2e-07
2vig_A	391	Crystal Structure Of Human Short-Chain Acyl Coa Deh		1e-06
2z1q_A	577	Crystal Structure Of Acyl Coa Dehydrogenase Length		3e-07
2dvl_A	372	Crystal Structure Of Project Tt0160 From Thermus Th		5e-07
1siq_A	392	The Crystal Structure And Mechanism Of Human Glutar		6e-07
1siq_A	392	The Crystal Structure And Mechanism Of Human Glutar		2e-05
1sir_A	394	The Crystal Structure And Mechanism Of Human Glutar		7e-07
1sir_A	394	The Crystal Structure And Mechanism Of Human Glutar		2e-05
2r0m_A	394	The Effect Of A Glu370asp Mutation In Glutaryl-Coa		7e-07
2r0m_A	394	The Effect Of A Glu370asp Mutation In Glutaryl-Coa		2e-05
3owa_A	597	Crystal Structure Of Acyl-Coa Dehydrogenase Complex		8e-07
3pfd_A	393	Crystal Structure Of An Acyl-Coa Dehydrogenase From		1e-06
1jqi_A	388	Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd		1e-06
1jqi_A	388	Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd		3e-06
3mpi_A	397	Structure Of The Glutaryl-Coenzyme A Dehydrogenase		7e-06
2uxw_A	607	Crystal Structure Of Human Very Long Chain Acyl-coa		4e-05
3b96_A	587	Structural Basis For Substrate Fatty-Acyl Chain Spe		4e-05
3nf4_A	387	Crystal Structure Of Acyl-Coa Dehydrogenase From My		6e-05
2pg0_A	385	Crystal Structure Of Acyl-Coa Dehydrogenase From Ge		1e-04
2pg0_A	385	Crystal Structure Of Acyl-Coa Dehydrogenase From Ge		1e-04
1ukw_A	379	Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog		1e-04
4doy_A	437	Crystal Structure Of Dibenzothiophene Desulfurizati		1e-04
3mdd_A	385	Crystal Structures Of Medium Chain Acyl-Coa Dehydro		3e-04
1udy_A	396	Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta		3e-04
3swo_A	399	Crystal Structure Of A Glutaryl-Coa Dehydrogenase F		8e-04

>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 54/75 (72%)
Query: 68  LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
           L Q  LMG+E+  EYGG G SF++ +L++EE+A+VD SV++  +IQNTL+N LI K GT 
Sbjct: 69  LFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTE 128
Query: 128 EQKEKYLPRLAQTDV 142
           EQK  YLP+L    V
Sbjct: 129 EQKATYLPQLTTEKV 143

>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LLG  IP++YGGPGL +++  LI  E+ RVD     ++ +Q++LV   I + G+  QKEK
Sbjct: 67  LLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEK 126
Query: 64  YLPRLAQTDLMGV 76
           YLP+LA  + +G 
Sbjct: 127 YLPKLATGEWIGC 139

>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 68  LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
           + +  L+G  IP++YGGPGL +++  LI  E+ RVD     ++ +Q++LV   I + G+ 
Sbjct: 62  MGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSD 121
Query: 128 EQKEKYLPRLA 138
            QKEKYLP+LA
Sbjct: 122 AQKEKYLPKLA 132

>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LLG  IP++YGGPGL +++  LI  E+ RVD     ++ +Q++LV   I + G+  QKEK
Sbjct: 64  LLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEK 123
Query: 64  YLPRLAQTDLMGV 76
           YLP+LA  + +G 
Sbjct: 124 YLPKLATGEWIGC 136

>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 68  LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
           + +  L+G  IP++YGGPGL +++  LI  E+ RVD     ++ +Q++LV   I + G+ 
Sbjct: 59  MGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSD 118
Query: 128 EQKEKYLPRLA 138
            QKEKYLP+LA
Sbjct: 119 AQKEKYLPKLA 129

>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LLG  IP++YGGPGL +++  LI  E+ RVD     ++ +Q++LV   I + G+  QKEK
Sbjct: 63  LLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEK 122
Query: 64  YLPRLAQTDLMGV 76
           YLP+LA  + +G 
Sbjct: 123 YLPKLATGEWIGC 135

>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 68  LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
           + +  L+G  IP++YGGPGL +++  LI  E+ RVD     ++ +Q++LV   I + G+ 
Sbjct: 58  MGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSD 117
Query: 128 EQKEKYLPRLA 138
            QKEKYLP+LA
Sbjct: 118 AQKEKYLPKLA 128

>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
           +PR A+   +G  +P EYGG G+S     LI  E+ RVD  +   V +Q++LV   I   
Sbjct: 48  IPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAY 107
Query: 125 GTTEQKEKYLPRLAQTDV 142
           G+ EQK ++LP+LA+ ++
Sbjct: 108 GSEEQKREFLPKLARGEM 125

>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           +LG+  P +YGG GL ++  +L++EEI+R   +V +     + L  + +++ G   QKEK
Sbjct: 60  VLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEK 119
Query: 64  YLPRLAQTDLMGV 76
           YLP+L   + +G 
Sbjct: 120 YLPKLISGEYIGA 132

>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 63  KYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLII 122
           ++  +L    ++G+  P +YGG GL ++  +L++EEI+R   +V +     + L  + ++
Sbjct: 50  EFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLV 109
Query: 123 KLGTTEQKEKYLPRL 137
           + G   QKEKYLP+L
Sbjct: 110 RNGNEAQKEKYLPKL 124

>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 66  PRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLG 125
           P+L    + G  I + YG PGLS   + +   EIARVD S S  + + ++L    I   G
Sbjct: 93  PKLGAMGVAGGSI-KGYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCG 151
Query: 126 TTEQKEKYLPRLAQ 139
           +  QKEKYLP LAQ
Sbjct: 152 SEAQKEKYLPSLAQ 165

>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 66  PRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLG 125
           P+L    + G  I + YG PGLS   + +   EIARVD S S  + + ++L    I   G
Sbjct: 93  PKLGAMGVAGGSI-KGYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCG 151
Query: 126 TTEQKEKYLPRLAQ 139
           +  QKEKYLP LAQ
Sbjct: 152 SEAQKEKYLPSLAQ 165

>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 67  RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
           +LA+  + G  +P+ YGG GLS      +VE IA  D ++++ V   N+L    I+  G+
Sbjct: 46  KLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGS 105
Query: 127 TEQKEKYLPRLAQTDV 142
             QKE +LP+LA  + 
Sbjct: 106 EAQKEAFLPKLASGEA 121

>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LL +++P+E GG GL ++   + +EEI+R   S  +++ + N+L    I+K G+ EQK+ 
Sbjct: 51  LLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQA 110
Query: 64  YLPRLAQTDLMGV 76
           ++      D +G 
Sbjct: 111 WVTPFTSGDKIGC 123

>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 61  KEKYLP-----RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT 115
           KE   P     ++    L+ +++P+E GG GL ++   + +EEI+R   S  +++ + N+
Sbjct: 34  KEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNS 93
Query: 116 LVNDLIIKLGTTEQKEKYLPRLAQTD 141
           L    I+K G+ EQK+ ++      D
Sbjct: 94  LYLGPILKFGSKEQKQAWVTPFTSGD 119

>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 26/191 (13%)
Query: 34  DPSVSILVDIQNTLVNDLIIKL------GTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGL 87
           D SV  +     T V   ++ L      G  E     + +  +  L+ +++P+EYGG  L
Sbjct: 29  DESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDL 88
Query: 88  SFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDVSRTSR 147
             +   ++ EE++      S+      ++    ++  GT EQK KYLP+LA         
Sbjct: 89  PKVISTVVAEELSG-SGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASG------- 140
Query: 148 GYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQ------LKRWMVSCGLSLQILQFQ 201
                EW A Y  T+    +D L+  +   +  DG+      +K+W+ + G +     F 
Sbjct: 141 -----EWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFA 195
Query: 202 NLSSDMHMTGL 212
            +  + H T  
Sbjct: 196 KVDGE-HFTAF 205

>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 20/134 (14%)
Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
           L  LA+  L+G+  P+E+GG GL  +T  L +EE+A  DPSV+++V + + L   ++++ 
Sbjct: 40  LKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRF 99
Query: 125 GTTEQKEKYLPRLAQTDVSRTSRGYKALEWHAFY------GRTDSLPLNDHLSHISSGCV 178
           G+  QK +YL  LA        RG    EW   +        +D+  L      +  G V
Sbjct: 100 GSEAQKRRYLVPLA--------RG----EWIGAFCLTEPQAGSDAKSLRAEARRVKGGFV 147
Query: 179 GFDGQLKRWMVSCG 192
             +G +K W+ S G
Sbjct: 148 -LNG-VKSWITSAG 159

>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 5   LGVEIP--QEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKE 62
           LGV  P  + YG  G+S +   L+  E+ RVD      + +Q++LV   I   G+ EQ++
Sbjct: 57  LGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQ 116
Query: 63  KYLPRLAQTDLMGV 76
           KYLP+LA+ +L+G 
Sbjct: 117 KYLPQLAKGELLGC 130

>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 82  YGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 141
           YG  G+S +   L+  E+ RVD      + +Q++LV   I   G+ EQ++KYLP+LA+ +
Sbjct: 67  YGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGE 126
Query: 142 V 142
           +
Sbjct: 127 L 127

>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 5   LGVEIP--QEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKE 62
           LGV  P  + YG  G+S +   L+  E+ RVD      + +Q++LV   I   G+ EQ++
Sbjct: 59  LGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQ 118
Query: 63  KYLPRLAQTDLMGV 76
           KYLP+LA+ +L+G 
Sbjct: 119 KYLPQLAKGELLGC 132

>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 82  YGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 141
           YG  G+S +   L+  E+ RVD      + +Q++LV   I   G+ EQ++KYLP+LA+ +
Sbjct: 69  YGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGE 128
Query: 142 V 142
           +
Sbjct: 129 L 129

>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 5   LGVEIP--QEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKE 62
           LGV  P  + YG  G+S +   L+  E+ RVD      + +Q++LV   I   G+ EQ++
Sbjct: 59  LGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQ 118
Query: 63  KYLPRLAQTDLMGV 76
           KYLP+LA+ +L+G 
Sbjct: 119 KYLPQLAKGELLGC 132

>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 82  YGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 141
           YG  G+S +   L+  E+ RVD      + +Q++LV   I   G+ EQ++KYLP+LA+ +
Sbjct: 69  YGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGE 128
Query: 142 V 142
           +
Sbjct: 129 L 129

>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 17  GLSFMTDILIVEEIARVDPSVS----ILVDIQNTLVNDLIIKLGTTEQKE-----KYLPR 67
           G SF+ D + ++++   +   S    I    ++ +VN+++ +L   EQ E     + L  
Sbjct: 14  GGSFLVDEITIDQVFTPEDFSSEHKXIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKE 73
Query: 68  LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTT 127
             +  L+G ++P+EYGG GL  ++  LI E+ +R     +I       + +  I+  G  
Sbjct: 74  AGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GFAITHGAHVGIGSLPIVLFGNE 132
Query: 128 EQKEKYLPRLA 138
           EQK+KYLP LA
Sbjct: 133 EQKKKYLPLLA 143

>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 62  EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLI 121
           E+ L  L  +    + +P+EYGG G   +   +++EE+ARVD S S++  +       LI
Sbjct: 53  EEALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVDCSASLIPAVNKLGTMGLI 112
Query: 122 IKLGTTEQKEKYLPRLAQTDV 142
           ++ G+ E K++ LP +A  + 
Sbjct: 113 LR-GSEELKKQVLPAVASGEA 132

>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 44/73 (60%)
Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LL +++P+E  G GL ++   + +EEI+R   S  +++ + N+L    I+K G+++QK++
Sbjct: 55  LLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQ 114
Query: 64  YLPRLAQTDLMGV 76
           ++      D +G 
Sbjct: 115 WITPFTNGDKIGC 127

>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 61  KEKYLP-----RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT 115
           KE   P     ++ +  L+ +++P+E  G GL ++   + +EEI+R   S  +++ + N+
Sbjct: 38  KEHLFPTSQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNS 97
Query: 116 LVNDLIIKLGTTEQKEKYLPRLAQTD 141
           L    I+K G+++QK++++      D
Sbjct: 98  LYLGPILKFGSSQQKQQWITPFTNGD 123

>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 46  TLVNDLIIKLGTTEQKEKYLPR------LAQTDLMGVEIPQEYGGPGL--SFMTDILIVE 97
             VN  I+        E + P       + +    G  IP+EYGG G+   ++  +++ E
Sbjct: 18  NFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTE 77
Query: 98  EIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 141
           EIAR   ++ + ++++       I+  G+   K+KY+P+L+  +
Sbjct: 78  EIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAE 121

>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 33  VDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTD 92
           V+P      ++ +   ND +  +     +E     L +    G+++P E GG GL     
Sbjct: 58  VEPVSRFFEEVNDPAKNDALEMV-----EETTWQGLKELGAFGLQVPSELGGVGLCNTQY 112
Query: 93  ILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 141
             +VE +   D  V I +    ++    I+  GT  QKEKYLP+LA  +
Sbjct: 113 ARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGE 161

>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 33  VDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTD 92
           V+P      ++ +   ND +  +     +E     L +    G+++P E GG GL     
Sbjct: 38  VEPVSRFFEEVNDPAKNDALEMV-----EETTWQGLKELGAFGLQVPSELGGVGLCNTQY 92
Query: 93  ILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD 141
             +VE +   D  V I +    ++    I+  GT  QKEKYLP+LA  +
Sbjct: 93  ARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGE 141

>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 40  LVDIQNTLVNDLIIKLGTTEQKEKYLP-----RLAQTDLMGVEIPQEYGGPGLSFMTDIL 94
           L+++   + + ++  +    +K++  P     +L    L+ +  P+E+GG G  +   + 
Sbjct: 23  LIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQ 82
Query: 95  IVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLP 135
           ++EEIA    SV++ V + +   + L++  GT EQK+++LP
Sbjct: 83  VLEEIAARWASVAVAVSVHSLSSHPLLV-FGTEEQKKRWLP 122

>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 9   IPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL 68
           + ++YGG    F   ++I EE+ +V  S+ + + + N +V   I   GT EQK+K+LP+ 
Sbjct: 60  VDEKYGGLNADFAYSVVINEELEKVGSSL-VGIGLHNDIVTPYIASYGTEEQKQKWLPKC 118
Query: 69  AQTDLM 74
              +L+
Sbjct: 119 VTGELI 124

>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 64  YLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIK 123
           +  ++ +   +   + ++YGG    F   ++I EE+ +V  S+ + + + N +V   I  
Sbjct: 46  FWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKVGSSL-VGIGLHNDIVTPYIAS 104
Query: 124 LGTTEQKEKYLPR 136
            GT EQK+K+LP+
Sbjct: 105 YGTEEQKQKWLPK 117

>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 29/160 (18%)
Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDL---- 120
           + +L +  L+   IP+EYGG GL  + ++++ EE+A     +  +      + +DL    
Sbjct: 42  IEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTI-----PMASDLGITP 96
Query: 121 IIKLGTTEQKEKYL------PRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHIS 174
           ++  GT EQKE++L      P LA   +S    G  A        +T ++   DH  ++ 
Sbjct: 97  VLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAAL-----KTRAIRQGDH--YVL 149
Query: 175 SGCVGFDGQLKRWMVSCGLSLQILQFQNLSSDMHMTGLAS 214
           +G        K W+ + G +  ++ F  ++ ++   G+ +
Sbjct: 150 NGT-------KMWISNGGEAEWVVVFATVNPELRHKGVVA 182

>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization Enzyme C Length = 437

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 68  LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL-GT 126
           L  + L+ + +P+EYGG G  + T I +V EIA  D S+  L      L N  +I+L G+
Sbjct: 72  LRASGLLSLLVPREYGGWGADWPTAIEVVREIAAADGSLGHLFGYH--LTNAPMIELIGS 129
Query: 127 TEQKEKYLPRLAQ----TDVSRTSRGYKALEWHAFYGRTDSLPLND------HLSHISSG 176
            EQ+E    ++AQ    T  + +      L+W     +  + P  D         H  SG
Sbjct: 130 QEQEEHLYTQIAQNNWWTGNASSENNSHVLDW-----KVSATPTEDGGYVLNGTKHFCSG 184
Query: 177 CVGFD 181
             G D
Sbjct: 185 AKGSD 189

>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
           L R  +  LM   IP+ +GG GL  +   LI EE+A     V   ++  NTL    +I  
Sbjct: 43  LKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEA-NTLGQVPLIIG 101
Query: 125 GTTEQKEKYLPRLAQ 139
           G  +Q++KYL R+ +
Sbjct: 102 GNYQQQKKYLGRMTE 116

>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
           L R  +  LM   IP+ +GG GL  +   LI EE+A     V   ++  NTL    +I  
Sbjct: 53  LKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEA-NTLGQVPLIIG 111
Query: 125 GTTEQKEKYLPRLAQ 139
           G  +Q++KYL R+ +
Sbjct: 112 GNYQQQKKYLGRMTE 126

>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           +LG+ + Q YG  G + ++  L   E+   D      V +Q +L    I + G+ EQK +
Sbjct: 71  VLGMHL-QGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNE 129
Query: 64  YLPRLAQTDLMGV 76
           +LPRLA  D +G 
Sbjct: 130 WLPRLAAGDAIGC 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	2e-29
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	1e-27
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	2e-24
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	6e-23
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	6e-24
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	2e-22
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	8e-24
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	2e-22
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	1e-22
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	5e-21
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	4e-22
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	5e-21
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	5e-22
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	2e-21
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	6e-22
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	4e-21
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	9e-22
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	3e-20
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	9e-22
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	1e-20
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	2e-21
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	2e-19
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	2e-21
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	2e-20
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	2e-21
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	8e-21
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	3e-21
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	5e-20
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	9e-21
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	1e-19
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	2e-20
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	7e-19
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	3e-20
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	1e-19
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	3e-20
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	6e-19
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	5e-20
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	1e-18
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	8e-20
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	7e-19
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	8e-20
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	9e-19
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	9e-20
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	9e-19
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	1e-19
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	2e-18
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	1e-18
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	1e-17
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	3e-18
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	9e-18
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	6e-18
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	7e-18
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	2e-17
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	2e-17
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	7e-17
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	2e-16
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	8e-17
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	1e-15
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	4e-09
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	6e-08
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	2e-07
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	9e-07
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	1e-06
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	5e-06
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	2e-05
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	2e-04

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404

 Score =  112 bits (282), Expect = 2e-29
 Identities = 39/74 (52%), Positives = 54/74 (72%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
           +  L Q  LMG+E+  EYGG G SF++ +L++EE+A+VD SV++  +IQNTL+N LI K 
Sbjct: 66  IQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKH 125

Query: 125 GTTEQKEKYLPRLA 138
           GT EQK  YLP+L 
Sbjct: 126 GTEEQKATYLPQLT 139

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404

 Score =  106 bits (268), Expect = 1e-27
 Identities = 36/66 (54%), Positives = 51/66 (77%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           L+G+E+  EYGG G SF++ +L++EE+A+VD SV++  +IQNTL+N LI K GT EQK  
Sbjct: 74  LMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKAT 133

Query: 64  YLPRLA 69
           YLP+L 
Sbjct: 134 YLPQLT 139

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391

 Score = 98.3 bits (246), Expect = 2e-24
 Identities = 20/75 (26%), Positives = 43/75 (57%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
           + ++    L+ +++P+E GG GL ++   + +EEI+R   S  +++ + N+L    I+K 
Sbjct: 43  VKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKF 102

Query: 125 GTTEQKEKYLPRLAQ 139
           G+ EQK+ ++     
Sbjct: 103 GSKEQKQAWVTPFTS 117

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391

 Score = 94.1 bits (235), Expect = 6e-23
 Identities = 23/72 (31%), Positives = 43/72 (59%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LL +++P+E GG GL ++   + +EEI+R   S  +++ + N+L    I+K G+ EQK+ 
Sbjct: 51  LLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQA 110

Query: 64  YLPRLAQTDLMG 75
           ++      D +G
Sbjct: 111 WVTPFTSGDKIG 122

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387

 Score = 96.8 bits (242), Expect = 6e-24
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
           + +LA+  + G  +P+ YGG GLS      +VE IA  D ++++ V   N+L    I+  
Sbjct: 44  VRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLA 103

Query: 125 GTTEQKEKYLPRLAQ 139
           G+  QKE +LP+LA 
Sbjct: 104 GSEAQKEAFLPKLAS 118

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387

 Score = 93.0 bits (232), Expect = 2e-22
 Identities = 26/72 (36%), Positives = 41/72 (56%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           + G  +P+ YGG GLS      +VE IA  D ++++ V   N+L    I+  G+  QKE 
Sbjct: 52  VFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEA 111

Query: 64  YLPRLAQTDLMG 75
           +LP+LA  + +G
Sbjct: 112 FLPKLASGEALG 123

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372

 Score = 96.4 bits (241), Expect = 8e-24
 Identities = 29/75 (38%), Positives = 49/75 (65%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
           L  LA+  L+G+  P+E+GG GL  +T  L +EE+A  DPSV+++V + + L   ++++ 
Sbjct: 40  LKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRF 99

Query: 125 GTTEQKEKYLPRLAQ 139
           G+  QK +YL  LA+
Sbjct: 100 GSEAQKRRYLVPLAR 114

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372

 Score = 92.5 bits (231), Expect = 2e-22
 Identities = 28/72 (38%), Positives = 48/72 (66%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LLG+  P+E+GG GL  +T  L +EE+A  DPSV+++V + + L   ++++ G+  QK +
Sbjct: 48  LLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRR 107

Query: 64  YLPRLAQTDLMG 75
           YL  LA+ + +G
Sbjct: 108 YLVPLARGEWIG 119

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383

 Score = 92.9 bits (232), Expect = 1e-22
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLS---FMTDILIVEEIARVDPSVSILVDIQNTLVNDLI 121
           +  L    + G    ++YGG G      ++ IL VEE+A+ D  V+I +    +L  + I
Sbjct: 42  IDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPI 101

Query: 122 IKLGTTEQKEKYLPRLAQ 139
            + GT  QKEK+L  L +
Sbjct: 102 WQFGTEAQKEKFLVPLVE 119

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383

 Score = 88.7 bits (221), Expect = 5e-21
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 4   LLGVEIPQEYGGPGLS---FMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQ 60
           + G    ++YGG G      ++ IL VEE+A+ D  V+I +    +L  + I + GT  Q
Sbjct: 50  ITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQ 109

Query: 61  KEKYLPRLAQTDLMG 75
           KEK+L  L +   +G
Sbjct: 110 KEKFLVPLVEGTKLG 124

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393

 Score = 91.8 bits (229), Expect = 4e-22
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 67  RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
            L  +    + +P+EYGG G   +   +++EE+ARVD S S++  + N L    +I  G+
Sbjct: 58  ALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVDCSASLIPAV-NKLGTMGLILRGS 116

Query: 127 TEQKEKYLPRLAQ 139
            E K++ LP +A 
Sbjct: 117 EELKKQVLPAVAS 129

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393

 Score = 88.7 bits (221), Expect = 5e-21
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
              + +P+EYGG G   +   +++EE+ARVD S S++  + N L    +I  G+ E K++
Sbjct: 64  FSAIHVPEEYGGQGADSVATCIVIEEVARVDCSASLIPAV-NKLGTMGLILRGSEELKKQ 122

Query: 64  YLPRLAQTDLMG 75
            LP +A  + M 
Sbjct: 123 VLPAVASGEAMA 134

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396

 Score = 91.4 bits (228), Expect = 5e-22
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 67  RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
           R  +  LM   IP+  GG GL      LI EE+A     V   ++  N+L    II  G 
Sbjct: 55  RAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIEG-NSLGQMPIIIAGN 113

Query: 127 TEQKEKYLPRLAQ 139
            +QK+KYL R+ +
Sbjct: 114 DQQKKKYLGRMTE 126

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396

 Score = 89.9 bits (224), Expect = 2e-21
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           L+   IP+  GG GL      LI EE+A     V   ++  N+L    II  G  +QK+K
Sbjct: 61  LMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIEG-NSLGQMPIIIAGNDQQKKK 119

Query: 64  YLPRLAQTDLMG 75
           YL R+ +  LM 
Sbjct: 120 YLGRMTEEPLMC 131

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396

 Score = 91.5 bits (228), Expect = 6e-22
 Identities = 30/75 (40%), Positives = 47/75 (62%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
              + +  L+G  IP++YGGPGL +++  LI  E+ RVD     ++ +Q++LV   I + 
Sbjct: 56  FREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEF 115

Query: 125 GTTEQKEKYLPRLAQ 139
           G+  QKEKYLP+LA 
Sbjct: 116 GSDAQKEKYLPKLAT 130

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396

 Score = 89.2 bits (222), Expect = 4e-21
 Identities = 32/72 (44%), Positives = 48/72 (66%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LLG  IP++YGGPGL +++  LI  E+ RVD     ++ +Q++LV   I + G+  QKEK
Sbjct: 64  LLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEK 123

Query: 64  YLPRLAQTDLMG 75
           YLP+LA  + +G
Sbjct: 124 YLPKLATGEWIG 135

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439

 Score = 91.2 bits (227), Expect = 9e-22
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 67  RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
              +  L+  ++P   GG   S + + +I+EE+  V+P+ SI +     L    +I   +
Sbjct: 51  EAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDS 109

Query: 127 TEQKEKYLPRLAQ 139
              +EK+L     
Sbjct: 110 PSLQEKFLKPFIS 122

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439

 Score = 87.0 bits (216), Expect = 3e-20
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           L+  ++P   GG   S + + +I+EE+  V+P+ SI +     L    +I   +   +EK
Sbjct: 57  LIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEK 115

Query: 64  YLPRLAQ 70
           +L     
Sbjct: 116 FLKPFIS 122

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385

 Score = 90.7 bits (226), Expect = 9e-22
 Identities = 30/75 (40%), Positives = 45/75 (60%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
           +PR A+   +G  +P EYGG G+S     LI  E+ RVD  +   V +Q++LV   I   
Sbjct: 48  IPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAY 107

Query: 125 GTTEQKEKYLPRLAQ 139
           G+ EQK ++LP+LA+
Sbjct: 108 GSEEQKREFLPKLAR 122

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385

 Score = 87.6 bits (218), Expect = 1e-20
 Identities = 29/72 (40%), Positives = 44/72 (61%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
            LG  +P EYGG G+S     LI  E+ RVD  +   V +Q++LV   I   G+ EQK +
Sbjct: 56  FLGPTLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKRE 115

Query: 64  YLPRLAQTDLMG 75
           +LP+LA+ +++G
Sbjct: 116 FLPKLARGEMVG 127

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366

 Score = 89.5 bits (223), Expect = 2e-21
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
           L RL    L+  E+  E+GG GL    +      +  +  S+  ++  Q  +    + +L
Sbjct: 30  LVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG-MAAWTVQRL 88

Query: 125 GTTEQKEKYLPRLAQ 139
           G   Q+  +L  L  
Sbjct: 89  GDAGQRATFLKELTS 103

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366

 Score = 84.5 bits (210), Expect = 2e-19
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LL  E+  E+GG GL    +      +  +  S+  ++  Q  +    + +LG   Q+  
Sbjct: 38  LLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG-MAAWTVQRLGDAGQRAT 96

Query: 64  YLPRLAQ 70
           +L  L  
Sbjct: 97  FLKELTS 103

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379

 Score = 89.5 bits (223), Expect = 2e-21
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 67  RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
           +L +  L+   IP+EYGG GL  + ++++ EE+A     +  +  + + L    ++  GT
Sbjct: 44  KLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTIP-MASDLGITPVLLAGT 102

Query: 127 TEQKEKYLPRLAQ 139
            EQKE++L  L +
Sbjct: 103 EEQKERFLRPLTE 115

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379

 Score = 87.2 bits (217), Expect = 2e-20
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LL   IP+EYGG GL  + ++++ EE+A     +  +  + + L    ++  GT EQKE+
Sbjct: 50  LLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTIP-MASDLGITPVLLAGTEEQKER 108

Query: 64  YLPRLAQTDLMG 75
           +L  L +   + 
Sbjct: 109 FLRPLTEKPALA 120

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607

 Score = 90.5 bits (225), Expect = 2e-21
 Identities = 26/77 (33%), Positives = 37/77 (48%)

Query: 62  EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLI 121
           E     L +    G+++P E GG GL       +VE +   D  V I +    ++    I
Sbjct: 82  ETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGI 141

Query: 122 IKLGTTEQKEKYLPRLA 138
           +  GT  QKEKYLP+LA
Sbjct: 142 LLFGTKAQKEKYLPKLA 158

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607

 Score = 89.0 bits (221), Expect = 8e-21
 Identities = 24/72 (33%), Positives = 36/72 (50%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
             G+++P E GG GL       +VE +   D  V I +    ++    I+  GT  QKEK
Sbjct: 93  AFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEK 152

Query: 64  YLPRLAQTDLMG 75
           YLP+LA  + + 
Sbjct: 153 YLPKLASGETVA 164

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393

 Score = 89.5 bits (223), Expect = 3e-21
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
           + + AQ    GV I  + GG GLS +   +I E +A    S +  + I N +   +I   
Sbjct: 56  MRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSF 114

Query: 125 GTTEQKEKYLPRLAQ 139
           G  EQ+ K+ P L  
Sbjct: 115 GNEEQRHKFCPPLCT 129

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393

 Score = 86.0 bits (214), Expect = 5e-20
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
             GV I  + GG GLS +   +I E +A    S +  + I N +   +I   G  EQ+ K
Sbjct: 64  FGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHK 122

Query: 64  YLPRLAQTDLMG 75
           + P L   +   
Sbjct: 123 FCPPLCTMEKFA 134

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387

 Score = 88.0 bits (219), Expect = 9e-21
 Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
             +L    L+ +  P+E+GG G  +   + ++EEIA    SV++ V + ++L +  ++  
Sbjct: 53  FEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSV-HSLSSHPLLVF 111

Query: 125 GTTEQKEKYLPRLAQ 139
           GT EQK+++LP +  
Sbjct: 112 GTEEQKKRWLPGMLS 126

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387

 Score = 85.3 bits (212), Expect = 1e-19
 Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LL +  P+E+GG G  +   + ++EEIA    SV++ V + ++L +  ++  GT EQK++
Sbjct: 61  LLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSV-HSLSSHPLLVFGTEEQKKR 119

Query: 64  YLPRLAQTDLMG 75
           +LP +   + +G
Sbjct: 120 WLPGMLSGEQIG 131

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438

 Score = 87.7 bits (218), Expect = 2e-20
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
                   ++  +I   +GG G + +   ++VEE   V+PS ++ +     L    I  L
Sbjct: 51  YAAAVSAGILKGQISPAHGGTGGTLIESAILVEECYSVEPSAALTIFA-TGLGLTPIN-L 108

Query: 125 GTTEQKEKYLPRLA 138
               Q  ++L    
Sbjct: 109 AAGPQHAEFLAPFL 122

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438

 Score = 83.1 bits (206), Expect = 7e-19
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           +L  +I   +GG G + +   ++VEE   V+PS ++ +     L    I  L    Q  +
Sbjct: 59  ILKGQISPAHGGTGGTLIESAILVEECYSVEPSAALTIFA-TGLGLTPIN-LAAGPQHAE 116

Query: 64  YLPRLA 69
           +L    
Sbjct: 117 FLAPFL 122

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394

 Score = 86.8 bits (216), Expect = 3e-20
 Identities = 24/75 (32%), Positives = 43/75 (57%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
             +L    ++G+  P +YGG GL ++  +L++EEI+R   +V +     + L  + +++ 
Sbjct: 52  WKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRN 111

Query: 125 GTTEQKEKYLPRLAQ 139
           G   QKEKYLP+L  
Sbjct: 112 GNEAQKEKYLPKLIS 126

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394

 Score = 84.9 bits (211), Expect = 1e-19
 Identities = 25/72 (34%), Positives = 44/72 (61%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           +LG+  P +YGG GL ++  +L++EEI+R   +V +     + L  + +++ G   QKEK
Sbjct: 60  VLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEK 119

Query: 64  YLPRLAQTDLMG 75
           YLP+L   + +G
Sbjct: 120 YLPKLISGEYIG 131

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436

 Score = 86.5 bits (215), Expect = 3e-20
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
            P+L    + G  I   YG PGLS   + +   EIARVD S S  + + ++L    I   
Sbjct: 92  TPKLGAMGVAGGSIK-GYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALC 150

Query: 125 GTTEQKEKYLPRLAQ 139
           G+  QKEKYLP LAQ
Sbjct: 151 GSEAQKEKYLPSLAQ 165

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436

 Score = 83.5 bits (207), Expect = 6e-19
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           + G  I   YG PGLS   + +   EIARVD S S  + + ++L    I   G+  QKEK
Sbjct: 100 VAGGSIK-GYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEK 158

Query: 64  YLPRLAQTDLMG 75
           YLP LAQ + + 
Sbjct: 159 YLPSLAQLNTVA 170

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577

 Score = 86.6 bits (215), Expect = 5e-20
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 59  EQKEKYLPR-----LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQ 113
           E  E  L         +  L+ +++P+EYGG  L  +   ++ EE++      S+     
Sbjct: 55  EHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEELSG-SGGFSVTYGAH 113

Query: 114 NTLVNDLIIKLGTTEQKEKYLPRLA 138
            ++    ++  GT EQK KYLP+LA
Sbjct: 114 TSIGTLPLVYFGTEEQKRKYLPKLA 138

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577

 Score = 82.8 bits (205), Expect = 1e-18
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LL +++P+EYGG  L  +   ++ EE++      S+      ++    ++  GT EQK K
Sbjct: 74  LLAIDVPEEYGGLDLPKVISTVVAEELSG-SGGFSVTYGAHTSIGTLPLVYFGTEEQKRK 132

Query: 64  YLPRLAQTDLMG 75
           YLP+LA  + + 
Sbjct: 133 YLPKLASGEWIA 144

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399

 Score = 85.3 bits (212), Expect = 8e-20
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
                   ++G+ +   YG  G + ++  L   E+   D      V +Q +L    I + 
Sbjct: 63  AKEFGNLGVLGMHLQ-GYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRY 121

Query: 125 GTTEQKEKYLPRLAQ 139
           G+ EQK ++LPRLA 
Sbjct: 122 GSEEQKNEWLPRLAA 136

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399

 Score = 82.6 bits (205), Expect = 7e-19
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           +LG+ +   YG  G + ++  L   E+   D      V +Q +L    I + G+ EQK +
Sbjct: 71  VLGMHLQ-GYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNE 129

Query: 64  YLPRLAQTDLMG 75
           +LPRLA  D +G
Sbjct: 130 WLPRLAAGDAIG 141

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397

 Score = 85.3 bits (212), Expect = 8e-20
 Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGL--SFMTDILIVEEIARVDPSVSILVDIQNTLVNDLII 122
           +  + +    G  IP+EYGG G+   ++  +++ EEIAR   ++ + ++++       I+
Sbjct: 43  VRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTIL 102

Query: 123 KLGTTEQKEKYLPRLAQ 139
             G+   K+KY+P+L+ 
Sbjct: 103 TYGSEALKKKYVPKLSS 119

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397

 Score = 82.6 bits (205), Expect = 9e-19
 Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 4   LLGVEIPQEYGGPGL--SFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQK 61
             G  IP+EYGG G+   ++  +++ EEIAR   ++ + ++++       I+  G+   K
Sbjct: 51  FFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALK 110

Query: 62  EKYLPRLAQTDLMG 75
           +KY+P+L+  + +G
Sbjct: 111 KKYVPKLSSAEFLG 124

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403

 Score = 85.3 bits (212), Expect = 9e-20
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
              L +  L+G+ +   YG  G+S +   L   E+   D  +  LV +Q +L    I   
Sbjct: 68  AVELGELGLLGMHLK-GYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAF 126

Query: 125 GTTEQKEKYLPRLAQ 139
           G+ EQK+++LP +A 
Sbjct: 127 GSDEQKDQWLPDMAS 141

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403

 Score = 82.6 bits (205), Expect = 9e-19
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LLG+ +   YG  G+S +   L   E+   D  +  LV +Q +L    I   G+ EQK++
Sbjct: 76  LLGMHLK-GYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQ 134

Query: 64  YLPRLAQTDLMG 75
           +LP +A    +G
Sbjct: 135 WLPDMASGHRIG 146

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597

 Score = 85.5 bits (212), Expect = 1e-19
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 59  EQKEKYLPR-----LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQ 113
           EQ E            +  L+G ++P+EYGG GL  ++  LI E+ +R     +I     
Sbjct: 60  EQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GFAITHGAH 118

Query: 114 NTLVNDLIIKLGTTEQKEKYLPRLA 138
             + +  I+  G  EQK+KYLP LA
Sbjct: 119 VGIGSLPIVLFGNEEQKKKYLPLLA 143

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           LLG ++P+EYGG GL  ++  LI E+ +R     +I       + +  I+  G  EQK+K
Sbjct: 79  LLGADVPEEYGGIGLDKVSSALIAEKFSRAG-GFAITHGAHVGIGSLPIVLFGNEEQKKK 137

Query: 64  YLPRLAQTDLMG 75
           YLP LA  + + 
Sbjct: 138 YLPLLATGEKLA 149

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392

 Score = 82.2 bits (204), Expect = 1e-18
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKL 124
           +  + +  ++G  I   YG  G+S +   L+  E+ RVD      + +Q++LV   I   
Sbjct: 51  ISEMGELGVLGPTIK-GYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAY 109

Query: 125 GTTEQKEKYLPRLAQ 139
           G+ EQ++KYLP+LA+
Sbjct: 110 GSEEQRQKYLPQLAK 124

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392

 Score = 79.6 bits (197), Expect = 1e-17
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           +LG  I   YG  G+S +   L+  E+ RVD      + +Q++LV   I   G+ EQ++K
Sbjct: 59  VLGPTIK-GYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQK 117

Query: 64  YLPRLAQTDLMG 75
           YLP+LA+ +L+G
Sbjct: 118 YLPQLAKGELLG 129

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385

 Score = 80.6 bits (200), Expect = 3e-18
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
            L   + ++YGG    F   ++I EE+ +V  S  + + + N +V   I   GT EQK+K
Sbjct: 55  FLCPWVDEKYGGLNADFAYSVVINEELEKVGSS-LVGIGLHNDIVTPYIASYGTEEQKQK 113

Query: 64  YLPRLAQTDLMG 75
           +LP+    +L+ 
Sbjct: 114 WLPKCVTGELIT 125

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385

 Score = 79.5 bits (197), Expect = 9e-18
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 61  KEKYLPR-----LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT 115
           K   +PR     + +   +   + ++YGG    F   ++I EE+ +V  S  + + + N 
Sbjct: 38  KRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKVGSS-LVGIGLHND 96

Query: 116 LVNDLIIKLGTTEQKEKYLPRLA 138
           +V   I   GT EQK+K+LP+  
Sbjct: 97  IVTPYIASYGTEEQKQKWLPKCV 119

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403

 Score = 80.3 bits (199), Expect = 6e-18
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVS-ILVDIQNTLVNDLIIKLGTTEQKE 62
           LLG   P++ GG G      ++I EE+                 +    +I  G     +
Sbjct: 71  LLGAGFPEDAGGSGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLID 130

Query: 63  KYLPRLAQTDLMG 75
            Y+    + + +G
Sbjct: 131 TYVRPTLRGEKIG 143

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403

 Score = 79.9 bits (198), Expect = 7e-18
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 61  KEKYLPR-----LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVS-ILVDIQN 114
           +   +PR      A+  L+G   P++ GG G      ++I EE+                
Sbjct: 54  RAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICEEMHYAGSPGGVYASLFTC 113

Query: 115 TLVNDLIIKLGTTEQKEKYLPRLA 138
            +    +I  G     + Y+    
Sbjct: 114 GIAVPHMIASGDQRLIDTYVRPTL 137

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403

 Score = 79.1 bits (196), Expect = 2e-17
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDI-QNTLVNDLIIKLGTTEQKE 62
           LLG+  P+E GG G + +   L+ E I     S  +   +  + +    I   G+    E
Sbjct: 74  LLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIE 133

Query: 63  KYLPRLAQTDLMG 75
           +Y+       ++G
Sbjct: 134 RYVRPTLAGKMIG 146

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403

 Score = 78.7 bits (195), Expect = 2e-17
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 61  KEKYLPR-----LAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDI-QN 114
               +PR      A+  L+G+  P+E GG G + +   L+ E I     S  +   +  +
Sbjct: 57  HVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTH 116

Query: 115 TLVNDLIIKLGTTEQKEKYLPRLA 138
            +    I   G+    E+Y+    
Sbjct: 117 GIALPHIAANGSDALIERYVRPTL 140

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439

 Score = 77.3 bits (191), Expect = 7e-17
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTD-ILIVEEIARVDPSVSILVDIQNTLVNDLIIK 123
              L +  LMG  +P E GG G+  + D  + +  +AR D S ++ + +Q +    L  +
Sbjct: 56  FDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYE 115

Query: 124 LGTTEQKEKYLPRLA 138
               +++ + L    
Sbjct: 116 WRHGDERARTLAERI 130

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439

 Score = 76.2 bits (188), Expect = 2e-16
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTD-ILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKE 62
           L+G  +P E GG G+  + D  + +  +AR D S ++ + +Q +    L  +    +++ 
Sbjct: 64  LMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERA 123

Query: 63  KYLPRLAQTDLMG 75
           + L       ++ 
Sbjct: 124 RTLAERILRGMVA 136

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395

 Score = 76.9 bits (190), Expect = 8e-17
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 65  LPRLAQTDLMGVEIPQEYGGPGLSFMTD-ILIVEEIARVDPSVSILVDIQNT--LVNDLI 121
             + A+  LMG  +P E GG GL+ + D    +  +A  D S ++   +Q +  L     
Sbjct: 45  FEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYE 104

Query: 122 IKLGTT---EQKEKYLPRLAQ 139
            + GT       E+ L  +A+
Sbjct: 105 WQHGTPPVRAMAERLLRAMAE 125

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395

 Score = 73.4 bits (181), Expect = 1e-15
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 4   LLGVEIPQEYGGPGLSFMTD-ILIVEEIARVDPSVSILVDIQNT--LVNDLIIKLGTT-- 58
           L+G  +P E GG GL+ + D    +  +A  D S ++   +Q +  L      + GT   
Sbjct: 53  LMGATVPAELGGLGLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPV 112

Query: 59  -EQKEKYLPRLAQTDLMG 75
               E+ L  +A+ +   
Sbjct: 113 RAMAERLLRAMAEGEAAV 130

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 1/69 (1%)

Query: 67  RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
            L +  L     P+ YGG  +S       +  +A      +    +  T  +  I     
Sbjct: 71  LLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSLLCTHSH-QIAMFSK 129

Query: 127 TEQKEKYLP 135
             Q E +L 
Sbjct: 130 QLQDEIWLK 138

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422

 Score = 51.3 bits (123), Expect = 6e-08
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 1/63 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
           L     P+ YGG  +S       +  +A      +    +  T  +  I       Q E 
Sbjct: 77  LHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSLLCTHSH-QIAMFSKQLQDEI 135

Query: 64  YLP 66
           +L 
Sbjct: 136 WLK 138

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 67  RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGT 126
            L +T    +  P+++GG     +     V +IA    S   +  I   + N  +     
Sbjct: 43  ALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIG-VHNWHLALFSQ 101

Query: 127 TEQKEKY 133
             Q++ +
Sbjct: 102 QAQEDVW 108

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 4   LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEK 63
              +  P+++GG     +     V +IA    S   +  I   + N  +       Q++ 
Sbjct: 49  FFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIG-VHNWHLALFSQQAQEDV 107

Query: 64  Y 64
           +
Sbjct: 108 W 108

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 67  RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSV 106
            L  +  + +  P+ YGG  +        V  +A +D + 
Sbjct: 56  LLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDGAS 95

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 4  LLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSV 37
           + +  P+ YGG  +        V  +A +D + 
Sbjct: 62 AIRLLQPRLYGGYEVHPREFAETVMGVAALDGAS 95

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 10/99 (10%)

Query: 7   VEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLP 66
           V+  +EYG           I+     V       +D+   +    ++   T EQ+E++  
Sbjct: 71  VKKMREYGISD-----PEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFM 125

Query: 67  RLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPS 105
                ++ G      Y    +   T +  +E  A  DP 
Sbjct: 126 PAWNLEITGT-----YAQTEMGHGTHLRGLETTATYDPK 159

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 60  QKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVND 119
           + ++Y   + ++  M V+  +EYG           I+     V       +D+   +   
Sbjct: 56  RSQRYEVAVKKSATM-VKKMREYGISD-----PEEIMWFKNSVHRGHPEPLDLHLGMFLP 109

Query: 120 LIIKLGTTEQKEKYLPRLAQTDV 142
            ++   T EQ+E++       ++
Sbjct: 110 TLLHQATAEQQERFFMPAWNLEI 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	99.88
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	99.88
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	99.87
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	99.87
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	99.87
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	99.87
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	99.87
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	99.87
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	99.86
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	99.86
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	99.86
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	99.86
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	99.86
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	99.86
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	99.86
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	99.86
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	99.85
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	99.85
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	99.85
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	99.85
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	99.85
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	99.84
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	99.84
4hr3_A	415	Putative acyl-COA dehydrogenase; ssgcid, seattle s	99.84
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	99.83
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	99.78
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	99.78
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	99.78
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	99.72
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	99.71
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	99.68
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	99.62
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	99.58
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	99.58
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	99.53
2jif_A	404	Short/branched chain specific acyl-COA dehydrogen;	99.4
2d29_A	387	Acyl-COA dehydrogenase; structural genomics, NPPSF	99.39
3p4t_A	403	Putative acyl-COA dehydrogenase; ssgcid, structura	99.39
2dvl_A	372	Acyl-COA dehydrogenase; structural genomics, NPPSF	99.38
1ukw_A	379	Acyl-COA dehydrogenase; oxidoreductase, riken stru	99.37
3ii9_A	396	Glutaryl-COA dehydrogenase; slipchip, microfluidic	99.37
2vig_A	391	Short-chain specific acyl-COA dehydrogenase,; fatt	99.37
3pfd_A	393	Acyl-COA dehydrogenase; structural genomics, seatt	99.36
2eba_A	385	Putative glutaryl-COA dehydrogenase; thermus therm	99.36
1r2j_A	366	Protein FKBI; polyketide synthase, polyketide, acy	99.36
3r7k_A	403	Probable acyl COA dehydrogenase; ssgcid, structura	99.36
3nf4_A	387	Acyl-COA dehydrogenase; seattle structural genomic	99.36
2pg0_A	385	Acyl-COA dehydrogenase; GK1316, geobacillus kausto	99.36
4hr3_A	415	Putative acyl-COA dehydrogenase; ssgcid, seattle s	99.36
1rx0_A	393	Acyl-COA dehydrogenase family member 8, mitochondr	99.35
1egd_A	396	Medium chain acyl-COA dehydrogenase; flavoprotein,	99.34
3sf6_A	403	Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB	99.33
1ivh_A	394	Isovaleryl-COA dehydrogenase; oxidoreductase, acyl	99.33
2ix5_A	436	Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4,	99.32
1buc_A	383	Butyryl-COA dehydrogenase; acyl-COA dehydrogenase	99.31
3swo_A	399	Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d	99.3
2z1q_A	577	Acyl-COA dehydrogenase; FAD, structural genomics,	99.29
3mpi_A	397	Glutaryl-COA dehydrogenase; alpha-beta fold, oxido	99.28
3owa_A	597	Acyl-COA dehydrogenase; structural genomics, cente	99.26
2uxw_A	607	VERY-long-chain specific acyl-COA dehydrogenase; f	99.21
2c12_A	439	Nitroalkane oxidase; oxidoreductase, flavoenzyme,	99.19
3mkh_A	438	Nitroalkane oxidase; oxidoreductase flavoenzyme, a	99.15
1siq_A	392	GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog	99.15
3mxl_A	395	Nitrososynthase; flavin monooxygenase, acyl-COA de	99.13
3m9v_A	439	FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO	99.04
2wbi_A	428	Acyl-COA dehydrogenase family member 11; human, ph	99.03
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	99.01
2jbr_A	422	P-hydroxyphenylacetate hydroxylase C2 oxygenase C;	98.98
2or0_A	414	Hydroxylase; APC7385, rhodococcus SP. RHA1, struct	98.96
2rfq_A	394	3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1	98.95
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	98.68
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	98.26
3djl_A	541	Protein AIDB; alpha helix, beta-barrel, FAD, flavo	98.02
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	97.65
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	97.62
1w07_A	659	Acyl-COA oxidase; oxidoreductase, peroxisomal beta	97.52
1u8v_A	490	Gamma-aminobutyrate metabolism dehydratase/isomera	96.51
2ddh_A	661	Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl	95.76
2yyk_A	481	4-hydroxyphenylacetate-3-hydroxylase; structurome,	95.36
3hwc_A	515	Chlorophenol-4-monooxygenase component 2; beta bar	94.82

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1

Probab=99.88  E-value=4.3e-26  Score=182.92  Aligned_cols=197  Identities=21%  Similarity=0.281  Sum_probs=149.9

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCceeeecCCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQE   81 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~e~   81 (216)
                      .||+++.+|++|||.|+++.+...+.||+++.+.++++.+..|..++...|. +++++|+++|+|++.+|++.+++++||
T Consensus        36 ~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~-~g~~~q~~~~l~~~~~G~~~~~a~tEp  114 (366)
T 1r2j_A           36 DGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMAAWTVQR-LGDAGQRATFLKELTSGKLAAVGFSER  114 (366)
T ss_dssp             TTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHTTCC-CEEEECCBT
T ss_pred             CCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHhCCCeeEEEeCCC
Confidence            5999999999999999999999999999999999887766555445666778 999999999999999999557899999


Q ss_pred             CCCCCccHH-------------------------HHHHHHHHHHhhCC-Cce-eEeeechh-h-hHHHHHhcCCH--HHh
Q psy5139          82 YGGPGLSFM-------------------------TDILIVEEIARVDP-SVS-ILVDIQNT-L-VNDLIIKLGTT--EQK  130 (216)
Q Consensus        82 ~gG~~~~~~-------------------------~~~~v~e~lar~~~-~~~-~~v~~~~~-~-~~~~~~~~g~~--~~~  130 (216)
                      .+|+|...+                         .+.+++  +++++. +++ |+|+.+.+ + ......++|.+  ...
T Consensus       115 ~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v--~a~~~~~g~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~  192 (366)
T 1r2j_A          115 QAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVV--FGLQEDGSGAVVVVPADTPGVRVERVPKPSGCRAAGHA  192 (366)
T ss_dssp             TBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEE--EEBCSSSCCEEEEEETTSTTEEEEECSSCSSSTTSCCE
T ss_pred             CCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEE--EEEeCCCceEEEEEECCCCCeEecCCcCCccCCCCCee
Confidence            999885321                         133344  666653 443 77876542 2 22222445633  456


Q ss_pred             hhhchhc---ccccccccccchhhh-hhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------ccccee
Q psy5139         131 EKYLPRL---AQTDVSRTSRGYKAL-EWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQI  197 (216)
Q Consensus       131 ~~~l~~~---~~~~lg~~~~g~~~~-~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~i  197 (216)
                      +.+|+++   .++.++.++.|+... ...+...|          ..+++..+|.    ++.+++.         +||+||
T Consensus       193 ~v~f~~v~Vp~~~~lg~~~~g~~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~~fg~~i  258 (366)
T 1r2j_A          193 DLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGR----------KSVAWGCVGI----LRACRTAAVAHARTREQFGRPL  258 (366)
T ss_dssp             EEEEEEEEEEGGGBCTTTTSCTTTTTHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHTTCEETTEEG
T ss_pred             EEEEeeEEEcHHHcCCCCCccHHHHHHHHhhHHH----------HHHHHHHHHH----HHHHHHHHHHHHhcCccCCCch
Confidence            6788875   467888888888877 66666666          8888888888    6666543         499999


Q ss_pred             eeeeccc---ccccccccccC
Q psy5139         198 LQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       198 ~~~Q~v~---ad~~~~~~~~r  215 (216)
                      ++||.||   +||.++++++|
T Consensus       259 ~~~q~v~~~la~~~~~~~~ar  279 (366)
T 1r2j_A          259 GDHQLVAGHIADLWTAEQIAA  279 (366)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHH
Confidence            9999999   99999999876

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}

Probab=99.88  E-value=8.6e-26  Score=183.31  Aligned_cols=198  Identities=31%  Similarity=0.496  Sum_probs=151.0

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCceeeecCCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQE   81 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~e~   81 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+.++++.+..+..++...|..+++++|+++|+|.+.++.+.+++++||
T Consensus        72 ~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~~~~~a~tEp  151 (404)
T 2jif_A           72 QGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEA  151 (404)
T ss_dssp             TTTTSSSSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTCCEEEECCBT
T ss_pred             CCCCccCCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcceEEecCC
Confidence            59999999999999999999999999999999988877666555566778889999999999999999987668899999


Q ss_pred             CCCCCccHH-------------------------HHHHHHHHHHhhCC-----Cc-eeEeeechh-h-hHHHHHhcCCH-
Q psy5139          82 YGGPGLSFM-------------------------TDILIVEEIARVDP-----SV-SILVDIQNT-L-VNDLIIKLGTT-  127 (216)
Q Consensus        82 ~gG~~~~~~-------------------------~~~~v~e~lar~~~-----~~-~~~v~~~~~-~-~~~~~~~~g~~-  127 (216)
                      .+|+|...+                         .+.+++  +++++.     ++ .|+|+.+.+ + +.....++|.+ 
T Consensus       152 ~~Gsd~~~~~t~A~~~g~g~vlnG~K~~is~a~~Ad~~~v--~ar~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~  229 (404)
T 2jif_A          152 GAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLV--MANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRA  229 (404)
T ss_dssp             TBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEE--EEESCGGGGGGGEEEEEEETTCTTEEECCCCCBSSCTT
T ss_pred             CCCCChhhceeEEEEeCCEEEEEeEEEeecCCcccCEEEE--EEEeCCCCCCCceEEEEEecCCCCeEeccCcccccCCC
Confidence            999885321                         123333  555432     23 367776532 2 11222345543 


Q ss_pred             -HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------ccc
Q psy5139         128 -EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLS  194 (216)
Q Consensus       128 -~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg  194 (216)
                       ...+.+|+++   .++++|.++.|++.....+...|          ..+++..+|.    ++.+++.         +||
T Consensus       230 ~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~~fG  295 (404)
T 2jif_A          230 SSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGR----------IGIAAQMLGL----AQGCFDYTIPYIKERIQFG  295 (404)
T ss_dssp             SCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEETT
T ss_pred             CceEEEEEccEEECHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCcccC
Confidence             3456778875   46788988889887777777677          8888888888    6666543         499


Q ss_pred             ceeeeeeccc---ccccccccccC
Q psy5139         195 LQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       195 ~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      +||++||.||   +||.++++++|
T Consensus       296 ~~i~~~q~vq~~la~~~~~~~aar  319 (404)
T 2jif_A          296 KRLFDFQGLQHQVAHVATQLEAAR  319 (404)
T ss_dssp             EEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccHHHHHHHHHHHHHHHHHH
Confidence            9999999999   99999999876

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}

Probab=99.87  E-value=1e-25  Score=181.19  Aligned_cols=198  Identities=26%  Similarity=0.421  Sum_probs=150.9

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+...+.||+++.+.+.+..+..|..++...|..+++++|+++|++++.+|+.+ +++++|
T Consensus        46 ~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tE  125 (372)
T 2dvl_A           46 LGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTE  125 (372)
T ss_dssp             TTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCC
T ss_pred             CCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecC
Confidence            5999999999999999999999999999999998877666555335667789999999999999999999875 789999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCCCce-eEeeechh-h-hHHHHHhcCCH--HHh
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDPSVS-ILVDIQNT-L-VNDLIIKLGTT--EQK  130 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~~~~-~~v~~~~~-~-~~~~~~~~g~~--~~~  130 (216)
                      |.+|+|...+                         .+.+++  +++++.+++ |+|+.+.+ + ......++|.+  ...
T Consensus       126 p~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v--~a~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~  203 (372)
T 2dvl_A          126 PQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVV--MARTEKGISAFLVEKGTPGLSFGRPEEKMGLHAAHTA  203 (372)
T ss_dssp             SSCSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEE--EEEETTEEEEEEEETTCTTEEECCCCCCSSCTTSCEE
T ss_pred             CCCCCChhhCeeEEEEECCEEEEEeEEEeecCCCcCCEEEE--EEEeCCCcEEEEEeCCCCCeEecCcccccccCcCCee
Confidence            9999886421                         123333  555553333 67776542 2 11222345533  455


Q ss_pred             hhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccceee
Q psy5139         131 EKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQIL  198 (216)
Q Consensus       131 ~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~i~  198 (216)
                      +..|+++   .++.++.++.|+......+...|          ..+++..+|.    ++.+++.         +||+||+
T Consensus       204 ~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~~fg~~i~  269 (372)
T 2dvl_A          204 EVRLEEVFVPEENLLGEEGRGLAYALAGLDSGR----------VGVAAQAVGI----ARGAFEIAKAYAEEREQFGKKLK  269 (372)
T ss_dssp             EEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEETTEEGG
T ss_pred             EEEECcEEeCHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhhCcccCCchh
Confidence            6778875   46788988889887777777777          8888888888    6665543         4999999


Q ss_pred             eeeccc---ccccccccccC
Q psy5139         199 QFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       199 ~~Q~v~---ad~~~~~~~~r  215 (216)
                      +||.||   +||+++++++|
T Consensus       270 ~~q~vq~~la~~~~~~~aar  289 (372)
T 2dvl_A          270 EHQAIAFKIADMHVKIAAAR  289 (372)
T ss_dssp             GSHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            999999   99999999876

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*

Probab=99.87  E-value=1.1e-25  Score=182.78  Aligned_cols=198  Identities=17%  Similarity=0.219  Sum_probs=152.9

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCCh-hHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSV-SILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIP   79 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~   79 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+.+. +..+..+..++...+..+++++|+++|++++.+|+.+ +++++
T Consensus        69 ~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~t  148 (403)
T 3p4t_A           69 LGLLGAGFPEDAGGSGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAIT  148 (403)
T ss_dssp             TTCTTBTSCGGGTCCBCCTHHHHHHHHHHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECC
T ss_pred             CCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEec
Confidence            599999999999999999999999999999999987 5545444446667789999999999999999999976 78999


Q ss_pred             CCCCCCCccHH-------------------------HHHHHHHHHHhhCC----Cc-eeEeeechh-h-hHHHHHhcCCH
Q psy5139          80 QEYGGPGLSFM-------------------------TDILIVEEIARVDP----SV-SILVDIQNT-L-VNDLIIKLGTT  127 (216)
Q Consensus        80 e~~gG~~~~~~-------------------------~~~~v~e~lar~~~----~~-~~~v~~~~~-~-~~~~~~~~g~~  127 (216)
                      ||.+|+|...+                         .+.+++  +++++.    ++ .|+|+.+.+ + +.....++|.+
T Consensus       149 Ep~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad~~~v--~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~  226 (403)
T 3p4t_A          149 EPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVT--AARTGGPGAGGVSLIVVDKGTPGFEVTRKLDKMGWR  226 (403)
T ss_dssp             BTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEE--EEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCT
T ss_pred             CCCCCCCcccceEEEEEeCCEEEEEEEEEEecCCcccCEEEE--EEEeCCCCCCceEEEEEeCCCCCeEecCCCCcccCC
Confidence            99999986421                         133344  566653    23 367776542 2 21223455543


Q ss_pred             --HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cc
Q psy5139         128 --EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GL  193 (216)
Q Consensus       128 --~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~f  193 (216)
                        ...+.+|+++   .+++++.++.|+......+...|          ..+++..+|.    ++.+++.         +|
T Consensus       227 ~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~~a~~R~~f  292 (403)
T 3p4t_A          227 SSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAER----------VGLATQAYAG----AQRCLDLTVEWCRNRDTF  292 (403)
T ss_dssp             TSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEET
T ss_pred             CCCeeEEEEcceEecHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCccC
Confidence              4456778874   56788999999988777777777          8888888998    6666643         49


Q ss_pred             cceeeeeeccc---ccccccccccC
Q psy5139         194 SLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       194 g~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      |+||++||.||   +||.+.++++|
T Consensus       293 g~pi~~~q~vq~~la~~~~~~~aar  317 (403)
T 3p4t_A          293 GRPLISRQAVQNTLAGMARRIDVAR  317 (403)
T ss_dssp             TEEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999   99999999876

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}

Probab=99.87  E-value=1.4e-25  Score=181.54  Aligned_cols=197  Identities=24%  Similarity=0.368  Sum_probs=152.0

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+.+++..+..+. +....+..+++++|+++|++++.+|+.+ +++++|
T Consensus        62 ~G~~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tE  140 (393)
T 3pfd_A           62 SGFSAIHVPEEYGGQGADSVATCIVIEEVARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSE  140 (393)
T ss_dssp             HTCSCTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCB
T ss_pred             CCCCCCCCChhHCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcC
Confidence            49999999999999999999999999999999998877555443 5556688999999999999999999975 789999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC-----Cc-eeEeeechh-hh-HHHHHhcCCH
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP-----SV-SILVDIQNT-LV-NDLIIKLGTT  127 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~-----~~-~~~v~~~~~-~~-~~~~~~~g~~  127 (216)
                      |.+|+|...+                         .+.+++  ++++++     ++ .|+|+.+.+ +. ..+..++|.+
T Consensus       141 p~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v--~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~  218 (393)
T 3pfd_A          141 REAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTV--MAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIK  218 (393)
T ss_dssp             TTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEE--EEESCGGGGGGGEEEEEEETTSTTEEEEEECCBSSCT
T ss_pred             CCCCCCcccCeeEEEEcCCEEEEeeEEEEecCCcccCEEEE--EEEeCCCCCCCceEEEEEECCCCCeEecCCCCcccCC
Confidence            9999986421                         123333  555542     23 367776542 21 1334455633


Q ss_pred             --HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cc
Q psy5139         128 --EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GL  193 (216)
Q Consensus       128 --~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~f  193 (216)
                        ...+.+|+++   .++.++.++.|++.....+...|          ..+++..+|.    ++.+++.         +|
T Consensus       219 ~~~~~~v~fddv~Vp~~~~lg~~g~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~~a~~R~~f  284 (393)
T 3pfd_A          219 GSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTR----------PTIGAQAVGI----AQGALDAAIAYTKERKQF  284 (393)
T ss_dssp             TSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHTTH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEET
T ss_pred             CCCceEEEEccEEEcHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhcCccC
Confidence              4566788875   46788999999988877777777          8888888988    6666543         49


Q ss_pred             cceeeeeeccc---ccccccccccC
Q psy5139         194 SLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       194 g~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      |+||++||.||   +||.++++++|
T Consensus       285 g~~i~~~q~vq~~la~~~~~~~aar  309 (393)
T 3pfd_A          285 GRPVSDNQGVQFMLADMAMKIEAAR  309 (393)
T ss_dssp             TEEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999   99999999887

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*

Probab=99.87  E-value=2.2e-25  Score=180.02  Aligned_cols=198  Identities=26%  Similarity=0.373  Sum_probs=152.8

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+.+++..+..|..++...|..+++++|+++|++++.+|+.+ +++++|
T Consensus        50 ~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tE  129 (387)
T 2d29_A           50 FGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTE  129 (387)
T ss_dssp             TTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCB
T ss_pred             CCCCCCCCChhhCCCCCCHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            6999999999999999999999999999999998887666555446677889999999999999999999975 789999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC---------Cce-eEeeechh-h-hHHHHHh
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP---------SVS-ILVDIQNT-L-VNDLIIK  123 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~---------~~~-~~v~~~~~-~-~~~~~~~  123 (216)
                      |.+|+|...+                         .+.+++  +++++.         +++ |+|+.+.+ + +.....+
T Consensus       130 p~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v--~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~  207 (387)
T 2d29_A          130 PGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVV--MARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEK  207 (387)
T ss_dssp             TTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEE--EEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCC
T ss_pred             CCCCCCHhhCceEEEEeCCEEEEEeEEeccCCCCcCCEEEE--EEEeCCccccCCCCCCeEEEEEeCCCCCeeccCcccc
Confidence            9999886321                         133344  566542         233 77876542 2 2233445


Q ss_pred             cCCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec-------
Q psy5139         124 LGTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC-------  191 (216)
Q Consensus       124 ~g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~-------  191 (216)
                      +|.+  ...+..|+++   .++.++.++.|+......+...|          ..+++..+|.    ++.+++.       
T Consensus       208 ~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~  273 (387)
T 2d29_A          208 LGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGR----------IGIAAMAVGL----GQAALDYALAYAKG  273 (387)
T ss_dssp             SSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred             cCCCCCCeeEEEEeeEEECHHHcCCCCCccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHh
Confidence            6643  4556778875   56788988889888777777777          8888888998    6666543       


Q ss_pred             --cccceeeeeeccc---ccccccccccC
Q psy5139         192 --GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 --~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                        +||+||++||.||   +||.++++++|
T Consensus       274 R~~fg~~i~~~q~vq~~la~~~~~~~aar  302 (387)
T 2d29_A          274 REAFGRPIAEFEGVSFKLAEAATELEAAR  302 (387)
T ss_dssp             CEETTEEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCcchHhhHHHHHHHHHHHHHHHHHH
Confidence              4999999999999   99999999876

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=99.87  E-value=3.6e-25  Score=179.11  Aligned_cols=197  Identities=23%  Similarity=0.299  Sum_probs=147.9

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+.+.+..+..+. +....|..+++++|+++|+|++.+|+.+ +++++|
T Consensus        62 ~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tE  140 (393)
T 1rx0_A           62 LGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTE  140 (393)
T ss_dssp             TTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCB
T ss_pred             CCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhCcchhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecC
Confidence            59999999999999999999999999999999988766665544 5667788999999999999999999976 689999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC----Cce-eEeeechh-h-hHHHHHhcCCH-
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP----SVS-ILVDIQNT-L-VNDLIIKLGTT-  127 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~----~~~-~~v~~~~~-~-~~~~~~~~g~~-  127 (216)
                      |.+|+|....                         .+.+++  +++++.    +++ |+|+.+.+ + +.....++|.+ 
T Consensus       141 p~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v--~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~  218 (393)
T 1rx0_A          141 PGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVV--MCRTGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNS  218 (393)
T ss_dssp             TTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEE--EEESSSSSGGGEEEEEEETTCTTEEECCCCCBSSCTT
T ss_pred             CCCCcCcccceeEEEEcCCEEEEEeEEEeecCCccCCEEEE--EEEcCCCCCCceEEEEEeCCCCCeEecCcccccccCC
Confidence            9999886321                         122333  555532    133 66776532 1 11112334433 


Q ss_pred             -HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------ccc
Q psy5139         128 -EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLS  194 (216)
Q Consensus       128 -~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg  194 (216)
                       ...+.+|+++   .+++++.++.|++.....+...|          ..+++..+|.    ++.+++.         +||
T Consensus       219 ~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~~fG  284 (393)
T 1rx0_A          219 QPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGR----------INIASCSLGA----AHASVILTRDHLNVRKQFG  284 (393)
T ss_dssp             SCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEETT
T ss_pred             CCceEEEEcCeEeCHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCccCC
Confidence             3456778774   46788888888887776666666          8888888888    6666543         499


Q ss_pred             ceeeeeeccc---ccccccccccC
Q psy5139         195 LQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       195 ~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      +||++||.||   +||.++++++|
T Consensus       285 ~~i~~~q~vq~~la~~~~~~~aar  308 (393)
T 1rx0_A          285 EPLASNQYLQFTLADMATRLVAAR  308 (393)
T ss_dssp             EEGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999   99999999886

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}

Probab=99.87  E-value=1.9e-25  Score=181.25  Aligned_cols=198  Identities=16%  Similarity=0.209  Sum_probs=151.5

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHcc-CCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARV-DPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIP   79 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~   79 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++. ++++...+..+..++...|..+++++|+++|++++.+|+.+ +++++
T Consensus        72 ~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~t  151 (403)
T 3r7k_A           72 VGLLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVT  151 (403)
T ss_dssp             HTCTTBTSCGGGTCCBCCHHHHHHHHHHHHHTTCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECC
T ss_pred             CCCCcCCCChhhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEec
Confidence            49999999999999999999999999999998 66654444323446677889999999999999999999976 78999


Q ss_pred             CCCCCCCccHH-------------------------HHHHHHHHHHhhCC----Cce-eEeeechh-h-hHHHHHhcCCH
Q psy5139          80 QEYGGPGLSFM-------------------------TDILIVEEIARVDP----SVS-ILVDIQNT-L-VNDLIIKLGTT  127 (216)
Q Consensus        80 e~~gG~~~~~~-------------------------~~~~v~e~lar~~~----~~~-~~v~~~~~-~-~~~~~~~~g~~  127 (216)
                      ||.+|+|+..+                         .+.+++  +++++.    +++ |+|+.+.+ + +.....++|.+
T Consensus       152 Ep~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad~~~v--~a~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~  229 (403)
T 3r7k_A          152 EPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTT--AVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWR  229 (403)
T ss_dssp             BTTBSSCGGGCCCEEEECSSEEEEEEEEEEEETTTTCSEEEE--EEECSSSSGGGEEEEEEETTCTTEEEEEECCBSSCT
T ss_pred             CCCCCCChhhceEEEEEECCEEEEEEEEEcccCCccCCEEEE--EEEcCCCCCCceEEEEEeCCCCCeEecCcccccCCC
Confidence            99999886421                         133334  566654    233 67776542 2 21334455544


Q ss_pred             --HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cc
Q psy5139         128 --EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GL  193 (216)
Q Consensus       128 --~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~f  193 (216)
                        ...+..|+++   .+++++.++.|+......+...|          ..+++..+|.    ++.+++.         +|
T Consensus       230 ~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~~f  295 (403)
T 3r7k_A          230 CSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAER----------LGIAVQAYAT----AGRALDLAKSWARERETF  295 (403)
T ss_dssp             TSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEET
T ss_pred             CCCceEEEEeeEEECHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHcCccC
Confidence              4456778874   56788999999988877777777          8888888998    6666643         49


Q ss_pred             cceeeeeeccc---ccccccccccC
Q psy5139         194 SLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       194 g~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      |+||++||.||   +||.+.++++|
T Consensus       296 g~~i~~~q~vq~~la~~~~~~~aar  320 (403)
T 3r7k_A          296 GRPLTGRQIIRHKLAEMARQVDVAC  320 (403)
T ss_dssp             TEEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhcHHHHHHHHHHHHHHHHHH
Confidence            99999999999   99999999886

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=99.86  E-value=3.7e-25  Score=179.14  Aligned_cols=198  Identities=25%  Similarity=0.435  Sum_probs=150.5

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+.+++..+..|..++...|..+++++|+++|+|++.+|+.+ +++++|
T Consensus        58 ~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE  137 (394)
T 1ivh_A           58 LGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSE  137 (394)
T ss_dssp             HTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCB
T ss_pred             CCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhchhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecC
Confidence            4899999999999999999999999999999999887766655446677889999999999999999999975 789999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC-------Cc-eeEeeechh-h-hHHHHHhcC
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP-------SV-SILVDIQNT-L-VNDLIIKLG  125 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~-------~~-~~~v~~~~~-~-~~~~~~~~g  125 (216)
                      |.+|+|....                         .+.+++  +++++.       ++ .|+|+.+.+ + +.....++|
T Consensus       138 p~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~~~Ad~~~v--~ar~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G  215 (394)
T 1ivh_A          138 PNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIV--YAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLG  215 (394)
T ss_dssp             TTBSSSGGGCCCEEEECSSEEEEEEEEEEEETGGGCSEEEE--EEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSS
T ss_pred             CCCCcCcccceEEEEEcCCEEEEEeEEEeeCCCCcCCEEEE--EEEeCCcccCCCCCeEEEEEeCCCCCeEecccccccc
Confidence            9999885321                         133344  566542       22 367776532 1 112223445


Q ss_pred             CH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------
Q psy5139         126 TT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------  191 (216)
Q Consensus       126 ~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------  191 (216)
                      .+  ...+..|+++   .++.++.++.|++.....+...|          ..+++..+|.    ++.+++.         
T Consensus       216 ~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~  281 (394)
T 1ivh_A          216 MRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLER----------LVLAGGPLGL----MQAVLDHTIPYLHVRE  281 (394)
T ss_dssp             CTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHHHHH----------HHHTHHHHHH----HHHHHHHHHHHHTTCE
T ss_pred             CCCCCeeEEEECcEEEcHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCe
Confidence            43  3456678774   46788988889887777776676          8888888888    6665543         


Q ss_pred             cccceeeeeeccc---ccccccccccC
Q psy5139         192 GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 ~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      +||+||++||.||   +||++.++++|
T Consensus       282 ~fg~~i~~~q~vq~~la~~~~~~~aar  308 (394)
T 1ivh_A          282 AFGQKIGHFQLMQGKMADMYTRLMACR  308 (394)
T ss_dssp             ETTEEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             eCCcchhccHHHHHHHHHHHHHHHHHH
Confidence            4999999999999   99999999876

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}

Probab=99.86  E-value=3.5e-25  Score=178.94  Aligned_cols=197  Identities=22%  Similarity=0.362  Sum_probs=147.4

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+.++++.+..|. ++...+..+++++|+++|++++.+|+.+ +++++|
T Consensus        59 ~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tE  137 (387)
T 3nf4_A           59 AGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSE  137 (387)
T ss_dssp             TTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCB
T ss_pred             CCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHhCchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcC
Confidence            59999999999999999999999999999999998887666554 6667789999999999999999999976 689999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhC---CCc-eeEeeechh-h-hHHHHHhcCCH--
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVD---PSV-SILVDIQNT-L-VNDLIIKLGTT--  127 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~---~~~-~~~v~~~~~-~-~~~~~~~~g~~--  127 (216)
                      |.+|+|...+                         .+.+++  +++++   .++ .|+|+.+.+ + ......++|.+  
T Consensus       138 p~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v--~a~~~~~~~g~~~flV~~~~pGv~~~~~~~~~G~~~~  215 (387)
T 3nf4_A          138 PQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTL--FARTGEGSRGVSCFLVPADQPGLSFGKPEEKMGLHAV  215 (387)
T ss_dssp             TTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEE--EEECC--CCCEEEEEEETTCTTEEECCCCCBSSCCSS
T ss_pred             CCCCCChhhCEEEEEEeCCEEEEEeEEecccCCcccCEEEE--EEEeCCCCCceEEEEEECCCCCeEecCcccccccCCC
Confidence            9999986421                         123333  55554   123 367776542 2 11223445543  


Q ss_pred             HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccc
Q psy5139         128 EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSL  195 (216)
Q Consensus       128 ~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~  195 (216)
                      ...+.+|+++   .++.+|.++.|+......+...|          ..+++..+|.    ++.+++.         +||+
T Consensus       216 ~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~~a~~R~~fg~  281 (387)
T 3nf4_A          216 PTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGR----------LGIAAVATGL----AQAALDEAVAYANERTAFGR  281 (387)
T ss_dssp             CEEEEEEEEEEEEGGGEESSTTCHHHHHHHTHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHC------
T ss_pred             CeeEEEEeeEEecHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCeeCCC
Confidence            3456778775   46788999999988777777777          8888888988    6665543         4999


Q ss_pred             eeeeeeccc---ccccccccccC
Q psy5139         196 QILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       196 ~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      ||++||.||   +||++.++++|
T Consensus       282 ~i~~~q~v~~~la~~~~~~~aar  304 (387)
T 3nf4_A          282 KIIDHQGLGFLLADMAAAVATAR  304 (387)
T ss_dssp             CTTTC-CHHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999   99999999876

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}

Probab=99.86  E-value=4.4e-25  Score=186.35  Aligned_cols=197  Identities=24%  Similarity=0.345  Sum_probs=149.2

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +||+++.+|++|||.|+++.+...+.|++++.+.+ ...+..|..++...+..+|+++|+++|+|++.+|+++ +++++|
T Consensus        77 ~Gl~gl~vPee~GG~G~~~~~~~~v~Eel~~~~~~-~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTE  155 (597)
T 3owa_A           77 LGLLGADVPEEYGGIGLDKVSSALIAEKFSRAGGF-AITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTE  155 (597)
T ss_dssp             TTTTCTTSCGGGTCCCCCHHHHHHHHHHHGGGTHH-HHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCB
T ss_pred             CCCCcCCCChhhCCCCCCHHHHHHHHHHHHccchH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecC
Confidence            59999999999999999999999999999998533 3334444445555688899999999999999999986 689999


Q ss_pred             CCCCCCccHH---------------------------HHHHHHHHHHhhCC-Cce-eEeeechh-h-hHHHHHhcCCH--
Q psy5139          81 EYGGPGLSFM---------------------------TDILIVEEIARVDP-SVS-ILVDIQNT-L-VNDLIIKLGTT--  127 (216)
Q Consensus        81 ~~gG~~~~~~---------------------------~~~~v~e~lar~~~-~~~-~~v~~~~~-~-~~~~~~~~g~~--  127 (216)
                      |.+|+|+...                           .+++++  ++|+++ +++ |+|+.+.+ + +.....++|.+  
T Consensus       156 p~aGSD~~~~~T~A~~~~dG~~yvLnG~K~~is~a~~Ad~~lV--~Art~~~g~s~flV~~~~pGv~v~~~~~~~Glrgs  233 (597)
T 3owa_A          156 PGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIV--YAKIDGEHFSAFIVEKDYAGVSTSPEEKKMGIKCS  233 (597)
T ss_dssp             TTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEE--EEEETTTEEEEEEEETTSTTEEECCCCCBSSCTTS
T ss_pred             CCCCCCcccceeEEEEeCCCCEEEEeeEEEEeCCCccCCEEEE--EEEeCCCceEEEEEeCCCCCeEEecccccccCCCC
Confidence            9999876321                           133344  566654 333 77776542 2 22222345544  


Q ss_pred             HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccc
Q psy5139         128 EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSL  195 (216)
Q Consensus       128 ~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~  195 (216)
                      ...+.+|+++   .++++|+++.|+......++..|          ..+++..+|.    ++++++.         +||+
T Consensus       234 ~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~R----------~~~aa~~lG~----a~~al~~a~~ya~~R~qfG~  299 (597)
T 3owa_A          234 STRTLILEDALVPKENLLGEIGKGHIIAFNILNIGR----------YKLGVGTVGS----AKRAVEISAQYANQRQQFKQ  299 (597)
T ss_dssp             CEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEETTE
T ss_pred             CceEEEEeceeecHHHhcCcccchHHHHHHhhHhHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCeeCCc
Confidence            3456678774   56789999999988888888777          8888889998    6666643         4999


Q ss_pred             eeeeeeccc---ccccccccccC
Q psy5139         196 QILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       196 ~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      ||++||.||   +||.+.++++|
T Consensus       300 pi~~~q~vq~~LA~m~~~~~aar  322 (597)
T 3owa_A          300 PIARFPLIQEKLANMAAKTYAAE  322 (597)
T ss_dssp             EGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHH
Confidence            999999999   99999999876

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1

Probab=99.86  E-value=2.6e-25  Score=179.21  Aligned_cols=197  Identities=23%  Similarity=0.365  Sum_probs=149.8

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+...+.||+++.+.+++..+..| .++...|..+++++|+++|+|++.+|+.+ +++++|
T Consensus        48 ~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tE  126 (379)
T 1ukw_A           48 VGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSE  126 (379)
T ss_dssp             TTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCB
T ss_pred             CCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhCchHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecC
Confidence            5999999999999999999999999999999998887666555 36677889999999999999999999975 689999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC-----Cc-eeEeeechh-h-hHHHHHhcCCH
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP-----SV-SILVDIQNT-L-VNDLIIKLGTT  127 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~-----~~-~~~v~~~~~-~-~~~~~~~~g~~  127 (216)
                      |.+|+|...+                         .+.+++  +++++.     ++ .|+|+.+.+ + +.....++|.+
T Consensus       127 p~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v--~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~G~~  204 (379)
T 1ukw_A          127 PGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVV--FATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQR  204 (379)
T ss_dssp             TTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTEEEEEE--EEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCT
T ss_pred             CCCCcChhhCeEEEEEeCCEEEEEEEEecccCCCcCCEEEE--EEEcCCCCCCCceEEEEEeCCCCCeEecCccccccCC
Confidence            9999876321                         122333  555542     22 367776532 2 11223445543


Q ss_pred             --HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cc
Q psy5139         128 --EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GL  193 (216)
Q Consensus       128 --~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~f  193 (216)
                        ...+.+|+++   .++.+|.++.|+......+...|          ..+++..+|.    ++.+++.         +|
T Consensus       205 ~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~~~~ya~~R~~f  270 (379)
T 1ukw_A          205 ASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTR----------IPVAAGSVGV----ARRALDEARKYAKEREAF  270 (379)
T ss_dssp             TSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCBSS
T ss_pred             CCCeeEEEEeeEEecHHhcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCeeC
Confidence              3456677775   46788888888887777666676          8888888888    6665543         49


Q ss_pred             cceeeeeeccc---ccccccccccC
Q psy5139         194 SLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       194 g~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      |+||++||.||   +||.++++++|
T Consensus       271 g~~i~~~q~vq~~la~~~~~~~aar  295 (379)
T 1ukw_A          271 GEPIANFQAIQFKLVDMLIGIETAR  295 (379)
T ss_dssp             SSBGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999   99999999876

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}

Probab=99.86  E-value=7e-25  Score=177.02  Aligned_cols=196  Identities=22%  Similarity=0.370  Sum_probs=149.9

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccC-CChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVD-PSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIP   79 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~   79 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+ .++++.+  |..++...|..+++++|+++|++++.+|+.+ +++++
T Consensus        53 ~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~t  130 (385)
T 2pg0_A           53 NGFLCPWVDEKYGGLNADFAYSVVINEELEKVGSSLVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMT  130 (385)
T ss_dssp             TTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHCGGGHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECC
T ss_pred             CCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhCCchHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeC
Confidence            599999999999999999999999999999999 7776544  4446677788999999999999999999975 78999


Q ss_pred             CCCCCCCccHH-------------------------HHHHHHHHHHhhCC-------Cc-eeEeeechh-h-hHHHHHhc
Q psy5139          80 QEYGGPGLSFM-------------------------TDILIVEEIARVDP-------SV-SILVDIQNT-L-VNDLIIKL  124 (216)
Q Consensus        80 e~~gG~~~~~~-------------------------~~~~v~e~lar~~~-------~~-~~~v~~~~~-~-~~~~~~~~  124 (216)
                      ||.+|+|...+                         .+.+++  +++++.       ++ .|+|+.+.+ + +.....++
T Consensus       131 Ep~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v--~a~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~  208 (385)
T 2pg0_A          131 EPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVV--ACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKV  208 (385)
T ss_dssp             BTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEE--EEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBS
T ss_pred             CCCCCcCHhhCeEEEEEcCCEEEEEeEEecccCCcccCEEEE--EEEeCCccCCCCCceEEEEEeCCCCCeEecCCcccc
Confidence            99999886321                         123344  566542       23 377776532 2 21233455


Q ss_pred             CCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec--------
Q psy5139         125 GTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC--------  191 (216)
Q Consensus       125 g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~--------  191 (216)
                      |.+  ...+.+|+++   .+++++.++.|++.....+...|          ..+++..+|.    ++.+++.        
T Consensus       209 g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R  274 (385)
T 2pg0_A          209 GLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQER----------LVVAIAAQTA----AEVMFSLTKQYVKQR  274 (385)
T ss_dssp             SCTTSCCEEEEEEEEEEEGGGEESCTTCHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHC
T ss_pred             ccCCCceEEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhcC
Confidence            643  4456778774   56788988889888777777777          8888888888    6666543        


Q ss_pred             -cccceeeeeeccc---ccccccccccC
Q psy5139         192 -GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 -~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                       +||+||++||.||   +||.++++++|
T Consensus       275 ~~fg~~i~~~q~v~~~la~~~~~~~aar  302 (385)
T 2pg0_A          275 TAFGKRVSEFQTVQFRLAEMATEIALGR  302 (385)
T ss_dssp             EETTEEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccchhHHHHHHHHHHHHHHHHHH
Confidence             4999999999999   99999999876

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*

Probab=99.86  E-value=6.1e-25  Score=177.96  Aligned_cols=197  Identities=22%  Similarity=0.351  Sum_probs=150.5

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+.+++..+ .|..++...|..+++++|+++|+|++.+|+.+ +++++|
T Consensus        59 ~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tE  137 (396)
T 1egd_A           59 LGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTE  137 (396)
T ss_dssp             HTCSSTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCB
T ss_pred             CCCCCCCCchhhCCCCCCHHHHHHHHHHHHhhCccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecC
Confidence            4899999999999999999999999999999998887665 44445666688999999999999999999976 689999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC--------Cc-eeEeeechh-h-hHHHHHhc
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP--------SV-SILVDIQNT-L-VNDLIIKL  124 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~--------~~-~~~v~~~~~-~-~~~~~~~~  124 (216)
                      |.+|+|...+                         .+.+++  +++++.        ++ .|+|+.+.+ + +.....++
T Consensus       138 p~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v--~a~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~  215 (396)
T 1egd_A          138 PGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFL--LARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNM  215 (396)
T ss_dssp             TTBSSSGGGCCCEEEECSSEEEEEEEEEEEETTTTCSEEEE--EEECCCCTTSCGGGTEEEEEEETTCTTEEECCCCCBS
T ss_pred             CCCCcchhhCeeEEEEeCCEEEEEEEEEcccCCcccCEEEE--EEEeCCCCCCCCCCCeEEEEEeCCCCCeeeCCccccc
Confidence            9999885321                         123333  566542        23 377776532 2 21334556


Q ss_pred             CCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec--------
Q psy5139         125 GTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC--------  191 (216)
Q Consensus       125 g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~--------  191 (216)
                      |.+  ...+..|+++   .++++|.++.|+......+...|          ..+++..+|.    ++.+++.        
T Consensus       216 G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R  281 (396)
T 1egd_A          216 GQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKER----------PVVAAGAVGL----AQRALDEATKYALER  281 (396)
T ss_dssp             SCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHTTC
T ss_pred             cccCCCeeEEEECcEEECHHHcCCCCCccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhcC
Confidence            643  3456778775   46788988889888777777777          8888888888    6665543        


Q ss_pred             -cccceeeeeeccc---ccccccccccC
Q psy5139         192 -GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 -~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                       +||+||++||.||   +||+++++++|
T Consensus       282 ~~fG~~i~~~q~vq~~la~~~~~~~aar  309 (396)
T 1egd_A          282 KTFGKLLVEHQAISFMLAEMAMKVELAR  309 (396)
T ss_dssp             EETTEEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence             4999999999999   99999999876

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}

Probab=99.86  E-value=1.1e-24  Score=176.89  Aligned_cols=196  Identities=23%  Similarity=0.270  Sum_probs=151.3

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+ ++|||.|+++.+.+.+.||+++.+.+++..+..|..++...|..+++++|+++|++++.+|+.+ +++++|
T Consensus        74 ~Gl~~l~~-~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tE  152 (403)
T 3sf6_A           74 LGLLGMHL-KGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTE  152 (403)
T ss_dssp             TTCSSTTS-CSTTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCB
T ss_pred             CCCCcccc-hhhCCCCCCHHHHHHHHHHHHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEcc
Confidence            59999999 9999999999999999999999998877666656556677899999999999999999999976 689999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCCCce-eEeeechh-h-hHHHHHhcCCH--HHh
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDPSVS-ILVDIQNT-L-VNDLIIKLGTT--EQK  130 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~~~~-~~v~~~~~-~-~~~~~~~~g~~--~~~  130 (216)
                      |.+|+|...+                         .+.+++  +++++.+++ |+|+.+.+ + +.....++|.+  ...
T Consensus       153 p~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v--~ar~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~  230 (403)
T 3sf6_A          153 PDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVV--WARTDEGIRGFVVPTDTPGFTANTIKSKMSLRASVTS  230 (403)
T ss_dssp             TTBSSCGGGCCCEEEEETTEEEEEEEEEEEETGGGCSEEEE--EEEETTEEEEEEEETTSTTEEEEECCSCSSCTTSCEE
T ss_pred             CCCCCCchhcEEEEEEECCEEEEEEEEEeecCCcccCEEEE--EEEeCCceEEEEEECCCCCeEecCCCCccCCCCCcee
Confidence            9999986421                         123333  566655444 67776542 1 12222345533  446


Q ss_pred             hhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccceee
Q psy5139         131 EKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQIL  198 (216)
Q Consensus       131 ~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~i~  198 (216)
                      +.+|+++   .++.++. +.|+......+...|          ..+++..+|.    ++.+++.         +||+||+
T Consensus       231 ~v~fd~v~Vp~~~~lg~-~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~~fg~pi~  295 (403)
T 3sf6_A          231 ELVLDGVRLPDSARLPG-ATSLGAPLRCLNEAR----------FGIVFGALGA----ARDCLETALAYACSREQFDRPIG  295 (403)
T ss_dssp             EEEEEEEEEEGGGBCTT-CCSTHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEETTEEGG
T ss_pred             EEEEccEEEcHHHccCC-ChhHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhhCcccCCcch
Confidence            6778874   4677877 788888777777777          8888888888    6666543         4999999


Q ss_pred             eeeccc---ccccccccccC
Q psy5139         199 QFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       199 ~~Q~v~---ad~~~~~~~~r  215 (216)
                      +||.||   +||+++++++|
T Consensus       296 ~~q~vq~~la~~~~~~~aar  315 (403)
T 3sf6_A          296 GFQLTQQKLADMTLEYGKGF  315 (403)
T ss_dssp             GSHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            999999   99999999886

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*

Probab=99.86  E-value=3.6e-25  Score=179.02  Aligned_cols=198  Identities=23%  Similarity=0.389  Sum_probs=152.2

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+.+++..+..|..++...|..+++++|+++|++++.+++.+ +++++|
T Consensus        49 ~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tE  128 (391)
T 2vig_A           49 LGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSE  128 (391)
T ss_dssp             HTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCB
T ss_pred             CCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecC
Confidence            4899999999999999999999999999999998877666655335677789999999999999999999975 789999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC-----Cc-eeEeeechh-h-hHHHHHhcCCH
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP-----SV-SILVDIQNT-L-VNDLIIKLGTT  127 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~-----~~-~~~v~~~~~-~-~~~~~~~~g~~  127 (216)
                      |.+|+|....                         .+.+++  +++++.     ++ .|+|+.+.+ + +.....++|.+
T Consensus       129 p~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v--~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r  206 (391)
T 2vig_A          129 PGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVV--FASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIR  206 (391)
T ss_dssp             TTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEE--EEECCSSSTTSCEEEEEEESSCTTEEECCCCCBSSCT
T ss_pred             CCCCCCcccceeEEEEeCCEEEEeeEEEeecCCCcCCEEEE--EEEeCCCCCCCceEEEEEeCCCCCeEecCccccccCC
Confidence            9999876421                         133344  566542     23 377876542 2 22333456643


Q ss_pred             --HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cc
Q psy5139         128 --EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GL  193 (216)
Q Consensus       128 --~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~f  193 (216)
                        ...+.+|+++   .+++++.++.|++.....+...|          ..+++..+|.    ++.+++.         +|
T Consensus       207 ~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~~f  272 (391)
T 2vig_A          207 GSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGR----------IGIASQALGI----AQTALDCAVNYAENRMAF  272 (391)
T ss_dssp             TSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEET
T ss_pred             CCCeeEEEECcEEECHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCccC
Confidence              4566778875   46788988889887777777776          8888888888    6666543         49


Q ss_pred             cceeeeeeccc---ccccccccccC
Q psy5139         194 SLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       194 g~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      |+||++||.||   +||+++++++|
T Consensus       273 g~~i~~~q~v~~~la~~~~~~~aar  297 (391)
T 2vig_A          273 GAPLTKLQVIQFKLADMALALESAR  297 (391)
T ss_dssp             TEEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999   99999999876

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}

Probab=99.85  E-value=1.1e-24  Score=175.91  Aligned_cols=197  Identities=24%  Similarity=0.316  Sum_probs=145.8

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+.+++..+..|..++...|..+++++|+++|+|++.+|+++ +++++|
T Consensus        54 ~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tE  133 (385)
T 2eba_A           54 LGFLGPTLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTE  133 (385)
T ss_dssp             HTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred             CCCcCCCCchhhCCCCCCHHHHHHHHHHHHHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCC
Confidence            4899999999999999999999999999999999888766665556667788999999999999999999975 689999


Q ss_pred             CCCCCCc-cHH-------------------------HHHHHHHHHHhhCCC-c-eeEeeechh-h-hHHHHHhcCCH--H
Q psy5139          81 EYGGPGL-SFM-------------------------TDILIVEEIARVDPS-V-SILVDIQNT-L-VNDLIIKLGTT--E  128 (216)
Q Consensus        81 ~~gG~~~-~~~-------------------------~~~~v~e~lar~~~~-~-~~~v~~~~~-~-~~~~~~~~g~~--~  128 (216)
                      |.+|+|. ..+                         .+.+++  +++++.+ + .|+|+.+.+ + +.....++|.+  .
T Consensus       134 p~~Gsd~~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v--~a~~~~g~~~~flV~~~~pGv~v~~~~~~~G~~~~~  211 (385)
T 2eba_A          134 PDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVI--WAKDEGGEVLGFLVPTDTPGFQAREVKRKMSLRASV  211 (385)
T ss_dssp             TTCTTSTTTTCCCEEEC--CEEEEEEEEEEEETTTTCSEEEE--EEECC---EEEEEEETTSTTEEEEECCSBSSSCSSC
T ss_pred             CCcCCCccccCeeEEEEeCCEEEEEeeeeccCCCcccCEEEE--EEEeCCCcEEEEEEeCCCCCeEecccccccccccCc
Confidence            9999887 211                         122333  4554322 3 366766532 1 11112234433  3


Q ss_pred             Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccce
Q psy5139         129 QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQ  196 (216)
Q Consensus       129 ~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~  196 (216)
                      ..+..|+++   .++.+ .++.|++.....+...|          ..+++..+|.    ++.+++.         +||+|
T Consensus       212 ~~~v~f~~v~Vp~~~~l-~~~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~~fg~~  276 (385)
T 2eba_A          212 TSELVLEEVRVPESLRL-PKALGLKAPLSCLTQAR----------FGIAWGAMGA----LEAVYEEAVAFAKSRSTFGEP  276 (385)
T ss_dssp             EEEEEEEEEEEEGGGBC-TTCCSTHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCBSSSSB
T ss_pred             eeEEEEccEEEcHHHcc-CCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhhCeeCCee
Confidence            456677764   35667 66778877666666666          8888888888    6655543         49999


Q ss_pred             eeeeeccc---ccccccccccC
Q psy5139         197 ILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       197 i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      |++||.||   +||.++++++|
T Consensus       277 i~~~q~vq~~la~~~~~~~aar  298 (385)
T 2eba_A          277 LAKKQLVQAKLAEMLAWHTEGL  298 (385)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHHHHHH
Confidence            99999999   99999998876

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}

Probab=99.85  E-value=1.8e-24  Score=175.36  Aligned_cols=196  Identities=23%  Similarity=0.268  Sum_probs=150.8

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+ ++|||.|+++.+.+.+.||+++.+.+++..+..|..++...|..+++++|+++|++++.+|+.+ +++++|
T Consensus        69 ~Gl~~l~~-~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tE  147 (399)
T 3swo_A           69 LGVLGMHL-QGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTE  147 (399)
T ss_dssp             HTCTTTTS-CSTTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCB
T ss_pred             CCCCcCCh-hhhCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecC
Confidence            49999999 9999999999999999999999998877666655556677899999999999999999999976 679999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCCCce-eEeeechh-h-hHHHHHhcCCH--HHh
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDPSVS-ILVDIQNT-L-VNDLIIKLGTT--EQK  130 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~~~~-~~v~~~~~-~-~~~~~~~~g~~--~~~  130 (216)
                      |.+|+|...+                         .+.+++  +++++.+++ |+|+.+.+ + +.....++|.+  ...
T Consensus       148 p~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad~~~v--~a~~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~  225 (399)
T 3swo_A          148 PDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATV--WAQTDDGIRGFLVPTDTPGFTANEIHRKLSLRASVTS  225 (399)
T ss_dssp             TTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEE--EEBCTTSCEEEEEETTSTTEEEEECCCBSSCCSSCEE
T ss_pred             CCCCCCCccceEEEEEeCCEEEEEEEEEeECCCCccCEEEE--EEEeCCceEEEEEeCCCCCeEeecCcCcccCCCCcee
Confidence            9999886421                         133334  566654444 67776542 1 21222345532  456


Q ss_pred             hhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccceee
Q psy5139         131 EKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQIL  198 (216)
Q Consensus       131 ~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~i~  198 (216)
                      +.+|+++   .++.++. +.|++.....+...|          ..+++..+|.    ++.+++.         +||+||+
T Consensus       226 ~v~fd~v~Vp~~~~lg~-~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~~a~~R~~fG~~i~  290 (399)
T 3swo_A          226 ELVLDNVRLPASAQLPL-AEGLSAPLSCLNEAR----------FGIVFGALGA----ARDSLETTIAYTQSREVFDKPLS  290 (399)
T ss_dssp             EEEEEEEEECGGGBCTT-CCSTHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEETTEEGG
T ss_pred             EEEEccEEEcHHHcCCC-ChhHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhcCeeCCcchh
Confidence            6778874   4677887 888888777777777          8888888988    6666543         4999999


Q ss_pred             eeeccc---ccccccccccC
Q psy5139         199 QFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       199 ~~Q~v~---ad~~~~~~~~r  215 (216)
                      +||.||   +||+++++++|
T Consensus       291 ~~q~vq~~la~~~~~~~aar  310 (399)
T 3swo_A          291 NYQLTQEKLANMTVELGKGM  310 (399)
T ss_dssp             GSHHHHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHHHHHHH
Confidence            999999   99999999886

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}

Probab=99.85  E-value=2e-24  Score=182.15  Aligned_cols=197  Identities=22%  Similarity=0.337  Sum_probs=148.8

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|++..+...+.|++ +.+.+.+..+..|..++...|..+|+++|+++|+|++.+|+++ +++++|
T Consensus        72 ~Gl~~l~vPee~GG~g~~~~~~~~v~eel-~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTE  150 (577)
T 2z1q_A           72 LGLLAIDVPEEYGGLDLPKVISTVVAEEL-SGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTE  150 (577)
T ss_dssp             TTTTSTTSCGGGTCCCCCHHHHHHHHHHH-TTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCB
T ss_pred             CCCCCcCCChhhCCCCCCHHHHHHHHHHH-hhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecC
Confidence            59999999999999999999999999999 6777776666656545566789999999999999999999976 689999


Q ss_pred             CCCCCCccHH---------------------------HHHHHHHHHHhhCC-Cc-eeEeeechh-h-hHHHHHhcCCH--
Q psy5139          81 EYGGPGLSFM---------------------------TDILIVEEIARVDP-SV-SILVDIQNT-L-VNDLIIKLGTT--  127 (216)
Q Consensus        81 ~~gG~~~~~~---------------------------~~~~v~e~lar~~~-~~-~~~v~~~~~-~-~~~~~~~~g~~--  127 (216)
                      |.+|+|+..+                           .+.+++  ++|+++ ++ .|+|+.+.+ + +.....++|.+  
T Consensus       151 p~aGSD~~~~~t~A~~~~dG~~~vLnG~K~~it~a~~Ad~~~V--~Ar~~g~gis~flVp~~~pGv~v~~~~~~~G~~~~  228 (577)
T 2z1q_A          151 PGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTV--FAKVDGEHFTAFLVERDTPGLSFGPEEKKMGIKAS  228 (577)
T ss_dssp             TTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEE--EEEETTTEEEEEEEETTCTTEEECCCCCBSSCTTS
T ss_pred             CCCCCCcccCeeEEEEeCCCCEEEEEEEeeCCCCCCccCEEEE--EEEeCCCeeEEEEEeCCCCCeEecCCCCCCCCCCC
Confidence            9999875321                           122233  555542 23 367776532 2 22222445643  


Q ss_pred             HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeee---------ccccc
Q psy5139         128 EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVS---------CGLSL  195 (216)
Q Consensus       128 ~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~---------~~fg~  195 (216)
                      ...+.+|+++   .++++|.++.|++.....++..|          ..+++..+|.    ++.+++         .+||+
T Consensus       229 ~~~~v~fddv~VP~~~llg~~g~g~~~~~~~l~~~R----------~~~aa~~~G~----a~~al~~a~~ya~~R~qfg~  294 (577)
T 2z1q_A          229 STRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGR----------YKLGAGAVGG----AKRALELSAQYATQRVQFGR  294 (577)
T ss_dssp             CEEEEEEEEEEEEGGGEESCTTCTHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCBCSSS
T ss_pred             ceeEEEecceeccHHHccCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCccCCC
Confidence            3456677764   46889999999988877777777          8888888888    555553         35999


Q ss_pred             eeeeeeccc---ccccccccccC
Q psy5139         196 QILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       196 ~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      ||++||.||   +||.+.++++|
T Consensus       295 pi~~~q~vq~~La~~~~~~~aar  317 (577)
T 2z1q_A          295 PIGRFGLIQQKLGEMASRIYAAE  317 (577)
T ss_dssp             BGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999   99999988876

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1

Probab=99.85  E-value=1.2e-24  Score=175.64  Aligned_cols=198  Identities=25%  Similarity=0.365  Sum_probs=149.7

Q ss_pred             CccccccCCCCCCCCC---CCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eee
Q psy5139           2 TTLLGVEIPQEYGGPG---LSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVE   77 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g---~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~   77 (216)
                      .||+++.+|++|||.|   +++.+...+.||+++.+.+++..+..|..++...|..+++++|+++|++++.+++.+ +++
T Consensus        48 ~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a  127 (383)
T 1buc_A           48 LGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFG  127 (383)
T ss_dssp             TSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEE
T ss_pred             CCCCCCCCChhhCCCCCCCCCHHHHHHHHHHHHhhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEE
Confidence            6999999999999999   999999999999999998887766655446677889999999999999999999975 789


Q ss_pred             cCCCCCCCCccHH--------------------------HHHHHHHHHHhhCC-----Cce-eEeeechh-h-hHHHHHh
Q psy5139          78 IPQEYGGPGLSFM--------------------------TDILIVEEIARVDP-----SVS-ILVDIQNT-L-VNDLIIK  123 (216)
Q Consensus        78 ~~e~~gG~~~~~~--------------------------~~~~v~e~lar~~~-----~~~-~~v~~~~~-~-~~~~~~~  123 (216)
                      ++||.+|+|...+                          .+.+++  +++++.     +++ |+|+.+.+ + +.....+
T Consensus       128 ~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~~s~~~~Ad~~~v--~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~  205 (383)
T 1buc_A          128 LTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIV--FAMTDKSKGNHGITAFILEDGTPGFTYGKKEDK  205 (383)
T ss_dssp             CCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEETTTTCSEEEE--EEESCSSSSTTSEEEEEEETTCTTEEEEEECCC
T ss_pred             eCCCCCCCChhhCEeEEEEcCCCEEEEEEEEeccCCCCcCCEEEE--EEEeCCCCCCCceEEEEEECCCCCeEecCcccc
Confidence            9999888875211                          122333  555542     233 67776432 2 1122344


Q ss_pred             cCCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec-------
Q psy5139         124 LGTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC-------  191 (216)
Q Consensus       124 ~g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~-------  191 (216)
                      +|.+  ...+.+|+++   .+++++.++.|++.....+...|          ..+++..+|.    ++.+++.       
T Consensus       206 ~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~~~~ya~~  271 (383)
T 1buc_A          206 MGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGR----------IGVAAQALGI----AEAALADAVEYSKQ  271 (383)
T ss_dssp             SSCTTSCEEEEEEEEEEECGGGEESCTTBHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred             ccccCCceeEEEEccEEeCHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHh
Confidence            5543  3456677775   46788888888887777666666          8888888888    6666543       


Q ss_pred             --cccceeeeeeccc---ccccccccccC
Q psy5139         192 --GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 --~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                        +||+||++||.||   +||.++++++|
T Consensus       272 R~~fG~~i~~~q~vq~~la~~~~~~~~ar  300 (383)
T 1buc_A          272 RVQFGKPLCKFQSISFKLADMKMQIEAAR  300 (383)
T ss_dssp             CEETTEEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             CeeCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence              4999999999999   99999998876

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*

Probab=99.85  E-value=3.4e-24  Score=175.30  Aligned_cols=196  Identities=24%  Similarity=0.309  Sum_probs=147.4

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +||+++.+| +|||.|++..+...+.||+++.+.+.+..+..|..++...|..+|+++|+++|++++.+|+.+ +++++|
T Consensus        98 ~Gl~~l~~p-e~GG~G~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tE  176 (436)
T 2ix5_A           98 MGVAGGSIK-GYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTE  176 (436)
T ss_dssp             TTCTTTTCC-STTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCB
T ss_pred             cCCCcCcCC-CCCCCCCCHHHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecC
Confidence            699999999 999999999999999999999998887666555556777889999999999999999999976 689999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhCC--Cce-eEeeechh-h-hHHHHHhcCCH--H
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVDP--SVS-ILVDIQNT-L-VNDLIIKLGTT--E  128 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~~--~~~-~~v~~~~~-~-~~~~~~~~g~~--~  128 (216)
                      |.+|+|...+                         .+++++  ++|++.  .++ |+|+.+.+ + +.....++|.+  .
T Consensus       177 p~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a~~Ad~~lv--~Ar~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~  254 (436)
T 2ix5_A          177 PDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLII--FARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQ  254 (436)
T ss_dssp             TTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEE--EEEETTTSSEEEEEEETTCTTEEEEECCCBSSSTTSC
T ss_pred             CCCCCCcccceEEEEEeCCEEEEeeeccCCCCCcccCEEEE--EEEECCCCcEEEEEEECCCCCeEeeccccccCCCcCC
Confidence            9999886421                         123333  555542  333 77776532 2 21222345544  3


Q ss_pred             Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccce
Q psy5139         129 QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQ  196 (216)
Q Consensus       129 ~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~  196 (216)
                      ..+.+|+++   .+++++.. .|+......+...|          ..+++..+|.    ++.+++.         +||+|
T Consensus       255 ~~~v~fddv~VP~~~~lg~~-~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~qfG~p  319 (436)
T 2ix5_A          255 NGDILLQNVFVPDEDRLPGV-NSFQDTSKVLAVSR----------VMVAWQPIGI----SMGIYDMCHRYLKERKQFGAP  319 (436)
T ss_dssp             EEEEEEEEEEEEGGGBCTTC-SSHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEETTEE
T ss_pred             ceeEEeccEEECHHHcCCcc-ccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhCeeCCcc
Confidence            456778875   45677754 56777666667776          8888888888    6665543         49999


Q ss_pred             eeeeeccc---ccccccccccC
Q psy5139         197 ILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       197 i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      |++||.||   +||.++++++|
T Consensus       320 i~~~q~vq~~la~~~~~~~aar  341 (436)
T 2ix5_A          320 LAAFQLNQQKLVQMLGNVQAMF  341 (436)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcHHHHHHHHHHHHHHHHHH
Confidence            99999999   99999999886

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*

Probab=99.84  E-value=1.9e-24  Score=182.93  Aligned_cols=198  Identities=22%  Similarity=0.331  Sum_probs=150.1

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|++..+...+.|++++.+.+++..+..|..++...|..+|+++|+++|+|++.+|+++ +++++|
T Consensus        91 ~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTE  170 (607)
T 2uxw_A           91 LGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTE  170 (607)
T ss_dssp             TTTTCTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCB
T ss_pred             cCCcCCCCChhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecC
Confidence            5999999999999999999999999999999888877666555444467788999999999999999999975 789999


Q ss_pred             CCCCCCccHH---------------------------HHHHHHHHHHhhC----------CCce-eEeeechh-h-hHHH
Q psy5139          81 EYGGPGLSFM---------------------------TDILIVEEIARVD----------PSVS-ILVDIQNT-L-VNDL  120 (216)
Q Consensus        81 ~~gG~~~~~~---------------------------~~~~v~e~lar~~----------~~~~-~~v~~~~~-~-~~~~  120 (216)
                      |.+|+|+..+                           .+.+++  +++++          .+++ |+|+.+.+ + +...
T Consensus       171 p~aGSD~~~~~t~A~~~~dG~~y~LnG~K~~is~~~~Ad~~lV--~Ar~~~~~~~~g~~~~gis~flVp~~~~Gv~v~~~  248 (607)
T 2uxw_A          171 PSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTV--FAKTPVTDPATGAVKEKITAFVVERGFGGITHGPP  248 (607)
T ss_dssp             TTBSSCGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEE--EEEEEEECTTTCCEEEEEEEEEEEGGGSSEEECCC
T ss_pred             CCCCCCcccceeEEEEeCCCCEEEEEeEEEeecCCcccCEEEE--EEEecCCCcccCCCCCceEEEEEeCCCCCeEEecC
Confidence            9999985311                           122233  55542          1123 67776532 2 2222


Q ss_pred             HHhcCCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec----
Q psy5139         121 IIKLGTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC----  191 (216)
Q Consensus       121 ~~~~g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~----  191 (216)
                      ..++|.+  ...+..|+++   .++++|+++.|++.+...++..|          +.+++..+|.    ++.+++.    
T Consensus       249 ~~~~G~rg~~t~~v~fddv~VP~~~llG~~g~G~~~~~~~l~~~R----------l~~aa~~~G~----a~~al~~a~~y  314 (607)
T 2uxw_A          249 EKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGR----------FGMAAALAGT----MRGIIAKAVDH  314 (607)
T ss_dssp             CCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHH
T ss_pred             ccccCCCCCCeeEEEeccEEecHHHhcCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHH
Confidence            3455644  3456677775   47889999999988877777777          8888888888    5555533    


Q ss_pred             -----cccceeeeeeccc---ccccccccccC
Q psy5139         192 -----GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 -----~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                           +||+||++||.||   +||.+.++++|
T Consensus       315 a~~R~qfG~pi~~~~~vq~~La~~~~~~eaar  346 (607)
T 2uxw_A          315 ATNRTQFGEKIHNFGLIQEKLARMVMLQYVTE  346 (607)
T ss_dssp             HHHCEETTEEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccCCchhhcHHHHHHHHHHHHHHHHHH
Confidence                 4999999999999   99999988776

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A

Probab=99.84  E-value=8.8e-25  Score=177.03  Aligned_cols=197  Identities=25%  Similarity=0.370  Sum_probs=143.3

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+...+.||+++.+.+++..+..|..++...|..+++++|+++|++++.+|+.+ +++++|
T Consensus        62 ~Gl~~l~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tE  141 (396)
T 3ii9_A           62 IGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTE  141 (396)
T ss_dssp             TTCSSTTSCGGGTSCCCCHHHHHHHHHHHHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCC
T ss_pred             CCCCCCCCChhhCCCCCCHHHHHHHHHHHHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecC
Confidence            5999999999999999999999999999999998877666554445566789999999999999999999986 689999


Q ss_pred             CCCCCCccHH-------------------------HHHHHHHHHHhhC--CC--c-eeEeeechh-h-hHHHHHhcCCH-
Q psy5139          81 EYGGPGLSFM-------------------------TDILIVEEIARVD--PS--V-SILVDIQNT-L-VNDLIIKLGTT-  127 (216)
Q Consensus        81 ~~gG~~~~~~-------------------------~~~~v~e~lar~~--~~--~-~~~v~~~~~-~-~~~~~~~~g~~-  127 (216)
                      |.+|+|...+                         .+.+++  +++++  ..  + .|+|+.+.+ + +.....++|.+ 
T Consensus       142 p~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad~~~v--~a~~~~~g~~g~~~flV~~~~pGv~v~~~~~~~G~~~  219 (396)
T 3ii9_A          142 PNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVV--WAKLDEDGRDEIRGFILEKGCKGLSAPAIHGKVGLRA  219 (396)
T ss_dssp             CC------CCCCEEEEETTEEEEEEEEEEEETGGGCSEEEE--EEEEEETTEEEEEEEEEETTCTTEECCBCCCCSSCTT
T ss_pred             CCCCCChhhCeeEEEEeCCEEEEEEEEEeECCCccCCEEEE--EEEecCCCCCceEEEEEecCCCCeEeccccccccCCc
Confidence            9999876321                         123333  55553  11  3 367776542 2 11222345544 


Q ss_pred             -HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------ccc
Q psy5139         128 -EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLS  194 (216)
Q Consensus       128 -~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg  194 (216)
                       ...+..|+++   .++.++. +.|++.....+...|          ..+++..+|.    ++.+++.         +||
T Consensus       220 ~~~~~v~fddv~Vp~~~~l~~-~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~~fg  284 (396)
T 3ii9_A          220 SITGEIVLDEAFVPEENILPH-VKGLRGPFTCLNSAR----------YGIAWGALGA----AESCWHIARQYVLDRKQFG  284 (396)
T ss_dssp             SCEEEEEEEEEEEEGGGBCTT-CCSTHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEETT
T ss_pred             CCeeEEEEccEEECHHHccCC-ChHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhhCeeCC
Confidence             3456778775   3567765 778887777777776          8888888888    6666644         499


Q ss_pred             ceeeeeeccc---ccccccccccC
Q psy5139         195 LQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       195 ~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      +||++||.||   +||.+.++++|
T Consensus       285 ~~i~~~q~vq~~la~~~~~~~aar  308 (396)
T 3ii9_A          285 RPLAANQLIQKKLADMQTEITLGL  308 (396)
T ss_dssp             EEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999   99999999887

>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}

Probab=99.84  E-value=2.4e-24  Score=175.45  Aligned_cols=198  Identities=17%  Similarity=0.246  Sum_probs=147.5

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHH-HHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVD-IQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIP   79 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~   79 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+.+...+.. .+.......|..+++++|+++|++++.+|+.+ +++++
T Consensus        70 ~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~t  149 (415)
T 4hr3_A           70 AGLWNLFLPDPELGGGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMT  149 (415)
T ss_dssp             TTCSSTTCCCTTTSCCCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECC
T ss_pred             CCCcCcCCCHHHCCCCCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEc
Confidence            59999999999999999999999999999998643221111 11112335788999999999999999999986 78999


Q ss_pred             CCC-CCCCccHH---------------------------HHHHHHHHHHhhCC------Cce-eEeeechh-h-hHHHHH
Q psy5139          80 QEY-GGPGLSFM---------------------------TDILIVEEIARVDP------SVS-ILVDIQNT-L-VNDLII  122 (216)
Q Consensus        80 e~~-gG~~~~~~---------------------------~~~~v~e~lar~~~------~~~-~~v~~~~~-~-~~~~~~  122 (216)
                      ||. +|+|+..+                           .+.+++  +++++.      +++ |+|+.+.+ + +.....
T Consensus       150 Ep~~~gsd~~~~~t~A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v--~a~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~  227 (415)
T 4hr3_A          150 EPDVASSDATNMAATAVVEGDEVVINGRKWWSTGVGHPDCKVIIF--MGLTDPNAHRYARHSMVLVPMDTPGITVERMLP  227 (415)
T ss_dssp             CTTSCTTSGGGCCCEEEEETTEEEEEEEEEEEETTTSTTEEEEEE--EEECCTTSCTTSSEEEEEEETTSTTEEEEEECC
T ss_pred             CCCCCCCchhhCeeEEEEECCEEEEeeEEeeECCCCCCCCCEEEE--EEEeCCCCCCCCceEEEEEEcCCCceEecCCCC
Confidence            999 88886311                           233444  666653      233 77876542 2 222344


Q ss_pred             hcCCH----HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec----
Q psy5139         123 KLGTT----EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC----  191 (216)
Q Consensus       123 ~~g~~----~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~----  191 (216)
                      ++|.+    ...+.+|+++   .+++++.++.|+......+...|          ..+++..+|.    ++.+++.    
T Consensus       228 ~~g~r~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~~  293 (415)
T 4hr3_A          228 TMGFYDEPGGHGVVSFDNVRLPADAFIAGPGKGFEIAQGRLGPGR----------VHHAMRLIGL----AEVALEHACRR  293 (415)
T ss_dssp             BTTBCCTTTCEEEEEEEEEEEEGGGBSSCTTCHHHHHHHHCSHHH----------HHHHHHHHHH----HHHHHHHHHHH
T ss_pred             ccccCCCCCCeeEEEEccEEECHHHcCCCCCchHHHHHHHHhHHH----------HHHHHHHHHH----HHHHHHHHHHH
Confidence            55543    2567788875   56789999999988777777777          8888888998    6666543    


Q ss_pred             -----cccceeeeeeccc---ccccccccccC
Q psy5139         192 -----GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 -----~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                           +||+||++||.||   +||++.++++|
T Consensus       294 a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar  325 (415)
T 4hr3_A          294 GLDRTAFGKPLVNLGGNRERIADARIAINQTR  325 (415)
T ss_dssp             HHHCEETTEEGGGSTTHHHHHHHHHHHHHHHH
T ss_pred             HhcCccCCCcHHHhHHHHHHHHHHHHHHHHHH
Confidence                 4999999999999   99999999887

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*

Probab=99.83  E-value=4.1e-24  Score=173.19  Aligned_cols=197  Identities=24%  Similarity=0.414  Sum_probs=149.8

Q ss_pred             CccccccCCCCCCCCCC--CHHHHHHHHHHHHccCCChhHHHHHHHhhHHH-HHHhcCChhHHHHHHHHHHhCCce-eee
Q psy5139           2 TTLLGVEIPQEYGGPGL--SFMTDILIVEEIARVDPSVSILVDIQNTLVND-LIIKLGTTEQKEKYLPRLAQTDLM-GVE   77 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~--~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~-~l~~~g~~~~~~~~l~~l~~g~~~-~~~   77 (216)
                      .||+++.+|++|||.|+  +..+.+.+.||+++.+.+++..+..| .++.. .+..+++++|+++|++.+.+|+.+ +++
T Consensus        49 ~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a  127 (397)
T 3mpi_A           49 LGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNME-VLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFG  127 (397)
T ss_dssp             TTTTCTTSCGGGTSCCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH-TTTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEE
T ss_pred             CCCCccCCChhhCCCCCCCCHHHHHHHHHHHHhhCchHHHHHHHH-HHhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEE
Confidence            59999999999999999  99999999999999999888766655 35555 789999999999999999999986 689


Q ss_pred             cCCCCCCCCccHH-------------------------HHHHHHHHHHhhCC-----Cce-eEe-eechh-hhHHHHHhc
Q psy5139          78 IPQEYGGPGLSFM-------------------------TDILIVEEIARVDP-----SVS-ILV-DIQNT-LVNDLIIKL  124 (216)
Q Consensus        78 ~~e~~gG~~~~~~-------------------------~~~~v~e~lar~~~-----~~~-~~v-~~~~~-~~~~~~~~~  124 (216)
                      ++||..|+|....                         .+.+++  +++++.     +++ |+| +.+.+ +......++
T Consensus       128 ~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v--~a~~~~~~~~~g~~~flV~~~~~~Gv~v~~~~~~  205 (397)
T 3mpi_A          128 ITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIY--YAYTDKAAGSRGLSAFVIEPRNFPGIKTSNLEKL  205 (397)
T ss_dssp             CCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEETTTTCSSEEE--EEESCGGGGGGSEEEEEECTTTSTTEEEEECCCS
T ss_pred             ecCCCCCCCcccCeEEEEEeCCEEEEEEEEEeeCCCcccCEEEE--EEEcCCCCCCCceEEEEEEcCCCCCeEeccCccc
Confidence            9999999886321                         123333  455432     233 666 65432 211333445


Q ss_pred             CCH--HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec--------
Q psy5139         125 GTT--EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC--------  191 (216)
Q Consensus       125 g~~--~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~--------  191 (216)
                      |.+  ...+..|+++   .+++++.++.|+......+...|          ..+++..+|.    ++.+++.        
T Consensus       206 G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~~~~~~~~r----------~~~aa~~lG~----a~~al~~a~~~a~~R  271 (397)
T 3mpi_A          206 GSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTR----------LSAAAGGVGL----AQACLDAAIKYCNER  271 (397)
T ss_dssp             SCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHC
T ss_pred             cCcCCceeEEEEeeEEECHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhhC
Confidence            544  3456677775   46788998999888777777777          8888888888    6666543        


Q ss_pred             -cccceeeeeeccc---ccccccccccC
Q psy5139         192 -GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 -~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                       +||+||++||.||   +||.+.++++|
T Consensus       272 ~~fg~~i~~~q~vq~~la~~~~~~~aar  299 (397)
T 3mpi_A          272 RQFGKPIGDFQMNQDMIAQMAVEVEAAR  299 (397)
T ss_dssp             EETTEEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCchhhhHHHHHHHHHHHHHHHHHH
Confidence             4999999999999   99999999886

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*

Probab=99.78  E-value=2.3e-22  Score=162.68  Aligned_cols=196  Identities=22%  Similarity=0.300  Sum_probs=140.3

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      .||+++.+ ++|||.|+++.+...+.||+++.+.+++..+..+..++...+..+++++|+++|++.+.+|+.+ +++++|
T Consensus        57 ~Gl~~l~~-~~~GG~g~~~~~~~~~~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE  135 (392)
T 1siq_A           57 LGVLGPTI-KGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTE  135 (392)
T ss_dssp             TTCSSTTC-EETTEECCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCB
T ss_pred             CCCCcccH-HhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECC
Confidence            59999999 9999999999999999999999988776555444445566788999999999999999999975 689999


Q ss_pred             CCCCCCccHH---------------------------HHHHHHHHHHhhCCC-c-eeEeeechh-hh-HHHHHhcCCH--
Q psy5139          81 EYGGPGLSFM---------------------------TDILIVEEIARVDPS-V-SILVDIQNT-LV-NDLIIKLGTT--  127 (216)
Q Consensus        81 ~~gG~~~~~~---------------------------~~~~v~e~lar~~~~-~-~~~v~~~~~-~~-~~~~~~~g~~--  127 (216)
                      |.+|+|...+                           .+.+++  +++++.+ + .|+|+.+.+ +. .....++|.+  
T Consensus       136 p~~gsd~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v--~a~~~~g~~~~flV~~~~pGv~v~~~~~~~G~~~~  213 (392)
T 1siq_A          136 PNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVV--WARCEDGCIRGFLLEKGMRGLSAPRIQGKFSLRAS  213 (392)
T ss_dssp             TTBSSCGGGCCCEEEEETTTTEEEEEEEEEEEETGGGCSEEEE--EEEETTSCEEEEEEETTCTTEECCBCCCCSSSTTS
T ss_pred             CCCCcCccccEEEEEEeCCCCEEEEEEEEEeecCCcccCEEEE--EEEECCCCEEEEEEeCCCCCeEeccccccccccCC
Confidence            9988876321                           122233  4554432 3 366766432 11 1111234433  


Q ss_pred             HHhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccc
Q psy5139         128 EQKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSL  195 (216)
Q Consensus       128 ~~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~  195 (216)
                      ...+.+|+++   .++.++.. .|+......+...|          ..+++..+|.    ++.+++.         +||+
T Consensus       214 ~~~~v~fd~v~Vp~~~~lg~~-~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~~fG~  278 (392)
T 1siq_A          214 ATGMIIMDGVEVPEENVLPGA-SSLGGPFGCLNNAR----------YGIAWGVLGA----SEFCLHTARQYALDRMQFGV  278 (392)
T ss_dssp             CEEEEEEEEEEEEGGGBCTTC-CSSHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEETTE
T ss_pred             ceEEEEEccEEECHHHcCCcc-cCHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhcCeeCCc
Confidence            3456677765   35667654 56666555555555          7777788888    6655543         4999


Q ss_pred             eeeeeeccc---ccccccccccC
Q psy5139         196 QILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       196 ~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      ||++||.||   +||.++++++|
T Consensus       279 ~i~~~q~vq~~la~~~~~~~~ar  301 (392)
T 1siq_A          279 PLARNQLIQKKLADMLTEITLGL  301 (392)
T ss_dssp             EGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999   99999998876

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}

Probab=99.78  E-value=1.5e-22  Score=166.05  Aligned_cols=196  Identities=18%  Similarity=0.192  Sum_probs=142.6

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhC--Cc-eeeec
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQT--DL-MGVEI   78 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g--~~-~~~~~   78 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+.+++..+..+ .++...+..+++++ ++++++++.+|  +. .++++
T Consensus        57 ~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~  134 (438)
T 3mkh_A           57 AGILKGQISPAHGGTGGTLIESAILVEECYSVEPSAALTIFAT-GLGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVF  134 (438)
T ss_dssp             TTTTGGGSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEEC
T ss_pred             CCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHh-hHHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEE
Confidence            5999999999999999999999999999999998776554433 34556678899999 89999999986  34 57899


Q ss_pred             CCCCCCCC-----cc--------------------HH----------HHHHHHHHHHhhCC-----------Cce-eEee
Q psy5139          79 PQEYGGPG-----LS--------------------FM----------TDILIVEEIARVDP-----------SVS-ILVD  111 (216)
Q Consensus        79 ~e~~gG~~-----~~--------------------~~----------~~~~v~e~lar~~~-----------~~~-~~v~  111 (216)
                      +||.+|++     +.                    ++          .+.+++  +++++.           .++ |+|+
T Consensus       135 tEp~~gs~~~~sd~~~~~t~A~~~g~g~~lnG~K~~is~a~~~~~~~Ad~~~v--~a~~~~~~~~~~~~~~~g~~~flV~  212 (438)
T 3mkh_A          135 SEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCDLACV--VCRDATTPLEEGQDPENKVMIILVT  212 (438)
T ss_dssp             CCTTCCTTTTCTTSCCCSCEEEEETTEEEEEEEECSCTTTTCTTSSCCSEEEE--EEEECSSCCCTTCCGGGGEEEEEEE
T ss_pred             ccCCCCCCccccccccceeEEEEeCCEEEEEeEEEEecCCCccccccCcEEEE--EEEecCcccCcccCCCCceEEEEEe
Confidence            99998873     32                    11          122233  444421           122 5666


Q ss_pred             ech-----h--h-hHHHHHhcCCHH--Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcc
Q psy5139         112 IQN-----T--L-VNDLIIKLGTTE--QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCV  178 (216)
Q Consensus       112 ~~~-----~--~-~~~~~~~~g~~~--~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~  178 (216)
                      .+.     +  + +.....++|.+.  ..+.+|+++   .++++|.++.|+......+...|          ..+++..+
T Consensus       213 ~~~~~~~~pG~v~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~~g~~~~~~~l~~~r----------~~~aa~~l  282 (438)
T 3mkh_A          213 RADLDRNGEGSFEVLRHVATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSA----------VLVGAMGV  282 (438)
T ss_dssp             HHHHHHHCTTSEEEEECCCCSSCTTCCCCEEEEEEEEEEGGGEEECTTTHHHHHHHHHHHHH----------HHHHHHHH
T ss_pred             cCccccCCCCcEEecCcCCCcCCcCCCceEEEECcEEECHHHcCCCCCchHHHHHHHHHHHH----------HHHHHHHH
Confidence            532     1  1 112223455543  245778874   56789999999988877777777          88888889


Q ss_pred             cCCCcceeeeeec---------ccc-ceeeeeeccc---ccccccccccC
Q psy5139         179 GFDGQLKRWMVSC---------GLS-LQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       179 g~~~~~~~~~~~~---------~fg-~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      |.    ++.+++.         +|| +||++||.||   +||+++++++|
T Consensus       283 G~----a~~al~~a~~ya~~R~~~g~~pi~~~q~vq~~la~~~~~~~aar  328 (438)
T 3mkh_A          283 GL----MRAAFDAALKFAKEDNRGGAVPLLERQAFADLLSGVKIQTEAAR  328 (438)
T ss_dssp             HH----HHHHHHHHHHHHHHCCTTCSSCGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             HH----HHHHHHHHHHHHhhcEeCCCeeccccHHHHHHHHHHHHHHHHHH
Confidence            98    6666543         488 9999999999   99999999887

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*

Probab=99.78  E-value=3.7e-22  Score=163.70  Aligned_cols=197  Identities=19%  Similarity=0.243  Sum_probs=144.5

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHH--hCCce-eeec
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA--QTDLM-GVEI   78 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~--~g~~~-~~~~   78 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+.+++..+..+. +....+..+++++|+++|++++.  +|+.+ ++++
T Consensus        55 ~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~  133 (439)
T 2c12_A           55 HGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMH  133 (439)
T ss_dssp             TTTTGGGSBGGGTCCBCCHHHHHHHHHHHHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEEC
T ss_pred             CCCCCCCCChhhCCCCCCHHHHHHHHHHHHhhChHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEe
Confidence            59999999999999999999999999999999998877655443 45567889999999999999998  57764 7899


Q ss_pred             CCCCCCCC-----cc--------------------HH----------HHHHHHHHHHhh-C----C---------Cc-ee
Q psy5139          79 PQEYGGPG-----LS--------------------FM----------TDILIVEEIARV-D----P---------SV-SI  108 (216)
Q Consensus        79 ~e~~gG~~-----~~--------------------~~----------~~~~v~e~lar~-~----~---------~~-~~  108 (216)
                      +||.+|++     ..                    ++          .+.+++  ++++ +    +         ++ .|
T Consensus       134 tEp~~Gs~~~~sd~~~~~t~A~~~~~g~~lnG~K~~is~~~~~~~~~Ad~~~v--~ar~~~~~~~~~~~~~~~~~g~~~f  211 (439)
T 2c12_A          134 SEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACV--VCRVSDDPSKPQDPNVDPATQIAVL  211 (439)
T ss_dssp             CCTTCSTTTTCTTSCCCSCEEEEETTEEEEEEEEECCTTTTTTTSSCCSEEEE--EEEECSCTTSCCCTTSCGGGGEEEE
T ss_pred             cCCCCCCCccccccccceeEEEEcCCEEEEEeEEEeecCCCccccccCcEEEE--EEEcCCcccCccccccCCCCceEEE
Confidence            99988863     21                    11          122333  5565 4    1         12 36


Q ss_pred             Eeeechh-------h-hHHHHHhcCCH--HHhhhhchhc---ccccccccccchh-hhhhhhccccCCceeeccceeeee
Q psy5139         109 LVDIQNT-------L-VNDLIIKLGTT--EQKEKYLPRL---AQTDVSRTSRGYK-ALEWHAFYGRTDSLPLNDHLSHIS  174 (216)
Q Consensus       109 ~v~~~~~-------~-~~~~~~~~g~~--~~~~~~l~~~---~~~~lg~~~~g~~-~~~~~~~~~~~~~~~l~g~k~~va  174 (216)
                      +|+.+.+       + +.....++|.+  ...+.+|+++   .+++++.++.|+. .....+...|          ..++
T Consensus       212 lV~~~~pGv~~~~Gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~~g~~~~~~~~l~~~r----------~~~a  281 (439)
T 2c12_A          212 LVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSA----------ALVG  281 (439)
T ss_dssp             EECHHHHHTSCGGGEEEEECCCBSSCTTCCCCEEEEEEEEEEGGGBCSCTTHHHHHHHHHHHHHHH----------HHHH
T ss_pred             EEECCCCcccCCCceEeCCcccccccCCCCceEEEEccEEecHHHcCCCCCccHHHHHHHHHHHHH----------HHHH
Confidence            6765432       0 11223445544  3456778874   4678888888888 6666666666          8888


Q ss_pred             cCcccCCCcceeeeee----------ccccceeeeeeccc---ccccccccccC
Q psy5139         175 SGCVGFDGQLKRWMVS----------CGLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       175 ~~~~g~~~~~~~~~~~----------~~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      +..+|.    ++.+++          .+||+||++||.||   +||++.++++|
T Consensus       282 a~~~G~----a~~al~~a~~ya~~rr~~~G~~i~~~q~vq~~la~~~~~~~aar  331 (439)
T 2c12_A          282 AMAIGT----ARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSR  331 (439)
T ss_dssp             HHHHHH----HHHHHHHHHHHHHHCCTTSSSCGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH----HHHHHHHHHHHHhhceeeCCeehhccHHHHHHHHHHHHHHHHHH
Confidence            888888    555543          24899999999999   99999999876

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}

Probab=99.72  E-value=9.3e-21  Score=153.40  Aligned_cols=198  Identities=17%  Similarity=0.098  Sum_probs=138.8

Q ss_pred             CccccccCCCCCCCCC-CCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHH--HhcCChhHH---HHHHHHHHhCCce-
Q psy5139           2 TTLLGVEIPQEYGGPG-LSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLI--IKLGTTEQK---EKYLPRLAQTDLM-   74 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g-~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l--~~~g~~~~~---~~~l~~l~~g~~~-   74 (216)
                      .||+++.+|++|||.| .++.+.+.+.||+++.+.+++..+..|...+...+  ..+++++|+   ++|++++.+|+.+ 
T Consensus        51 ~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~  130 (395)
T 3mxl_A           51 LGLMGATVPAELGGLGLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAV  130 (395)
T ss_dssp             HTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCE
T ss_pred             CCCcCcCCChhhCCCCCcCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEE
Confidence            4999999999999999 89999999999999999988876665543444433  367999999   9999999999965 


Q ss_pred             eeecCCCCCCCCc-------c-------------HHHHHHHHHHHHhhCCC-----ce-eEeeechh-h-hHHHHHhcCC
Q psy5139          75 GVEIPQEYGGPGL-------S-------------FMTDILIVEEIARVDPS-----VS-ILVDIQNT-L-VNDLIIKLGT  126 (216)
Q Consensus        75 ~~~~~e~~gG~~~-------~-------------~~~~~~v~e~lar~~~~-----~~-~~v~~~~~-~-~~~~~~~~g~  126 (216)
                      +++++||.+|...       .             ...+.+++  +++++..     ++ |+|+.+.+ + ......++|.
T Consensus       131 ~~a~tEp~~~~~~~~t~~~~g~~lnG~K~~is~a~~Ad~~~v--~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~  208 (395)
T 3mxl_A          131 CGALKDAPGVVTELHSDGAGGWLLSGRKVLVSMAPIATHFFV--HAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGM  208 (395)
T ss_dssp             ECCCSBCTTCCCEEEECSSSCEEEEEEEEEETTGGGCSEECC--CEEEECTTSCEEEECCCEETTCTTEEEECCCCBSSC
T ss_pred             EEEecCCCCCCCceEEecCCEEEEeeEEEEecCccccCEEEE--EEEeCCCCCCCceEEEEEECCCCceEeCCCchhcCC
Confidence            7889998764211       0             11233444  5665431     23 67776542 2 2222344553


Q ss_pred             H--HHhhhhchhc---cccccc--ccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec----cccc
Q psy5139         127 T--EQKEKYLPRL---AQTDVS--RTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC----GLSL  195 (216)
Q Consensus       127 ~--~~~~~~l~~~---~~~~lg--~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~----~fg~  195 (216)
                      +  ...+.+|+++   .+++++  .++.|++.........|          ..+++..+|.    ++.+++.    +-+|
T Consensus       209 r~~~~~~v~f~~v~Vp~~~~lg~~~~g~g~~~~~~~~~~~r----------~~~aa~~~G~----a~~al~~a~~~a~~r  274 (395)
T 3mxl_A          209 RASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVSS----------ITMLGIYAGI----AQAARDIAVGFCAGR  274 (395)
T ss_dssp             TTSCCEEEEEEEEEECGGGCCEEEESSCCCTTHHHHHHHHH----------GGGHHHHHHH----HHHHHHHHHHHHHTT
T ss_pred             CCCCcceEEEcceEcCHHHhcCCCCCCccHHHHHhhhHHHH----------HHHHHHHHHH----HHHHHHHHHHHHcCC
Confidence            3  4456778774   467777  66666654433233344          7778888888    6666544    4689


Q ss_pred             eeeeeeccc---ccccccccccC
Q psy5139         196 QILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       196 ~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      ||++||.||   +||.++++++|
T Consensus       275 ~i~~~q~vq~~la~~~~~~~aar  297 (395)
T 3mxl_A          275 GGEPRAGARALVAGLDTRLYALR  297 (395)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999   99999999887

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}

Probab=99.71  E-value=3.2e-21  Score=157.58  Aligned_cols=195  Identities=18%  Similarity=0.214  Sum_probs=142.0

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCC-hhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPS-VSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIP   79 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~   79 (216)
                      .||+++.+|+   |.|+++.+...+.||+++.+.+ .++....+...+...|..+++++|+++|++++.+|+.+ +++++
T Consensus        79 ~Gl~~l~~P~---G~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~t  155 (428)
T 2wbi_A           79 EGLWNLFLPA---VSGLSHVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMT  155 (428)
T ss_dssp             TTCCSTTCHH---HHCCCHHHHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECC
T ss_pred             CCCCeecCCC---CCCCCHHHHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEe
Confidence            5999999999   8899999999999999998642 22211111123455788899999999999999999985 78999


Q ss_pred             CCC-CCCCccH-------------------------H--HHHHHHHHHHhhCC-------Cc-eeEeeechh-h-hHHHH
Q psy5139          80 QEY-GGPGLSF-------------------------M--TDILIVEEIARVDP-------SV-SILVDIQNT-L-VNDLI  121 (216)
Q Consensus        80 e~~-gG~~~~~-------------------------~--~~~~v~e~lar~~~-------~~-~~~v~~~~~-~-~~~~~  121 (216)
                      ||. .|+|...                         .  .+.+++  +++++.       ++ .|+|+.+.+ + +....
T Consensus       156 Ep~~aGsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~~~Ad~~~v--~art~~~~~~~~~g~~~flV~~~~pGv~v~~~~  233 (428)
T 2wbi_A          156 EPDVASSDATNIECSIQRDEDSYVINGKKWWSSGAGNPKCKIAIV--LGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPL  233 (428)
T ss_dssp             CTTSCTTSGGGCCCEEEEETTEEEEEEEEEEEETTTSTTEEEEEE--EEECCCTTSCGGGCEEEEEEETTSTTEEEEEEC
T ss_pred             cCCcCCCCcccceEEEEEeCCEEEEEeEEeccCCCCCCcCCEEEE--EEEeCCccCCCCCceEEEEEECCCCcEEecCCC
Confidence            999 8888531                         1  223344  566543       23 377876532 2 21233


Q ss_pred             HhcCCHH-----Hhhhhchhc---ccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec--
Q psy5139         122 IKLGTTE-----QKEKYLPRL---AQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC--  191 (216)
Q Consensus       122 ~~~g~~~-----~~~~~l~~~---~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~--  191 (216)
                      .++|.+.     ..+.+|+++   .+++++.++.|+......+...|          ..+++..+|.    ++.+++.  
T Consensus       234 ~~~G~~~~~~~~~~~v~fddv~VP~~~~lg~~g~g~~~~~~~l~~~r----------~~~aa~~~G~----a~~al~~a~  299 (428)
T 2wbi_A          234 SVFGYTDNFHGGHFEIHFNQVRVPATNLILGEGRGFEISQGRLGPGR----------IHHCMRTVGL----AERALQIMC  299 (428)
T ss_dssp             CBTTBCCGGGCCEEEEEEEEEEEEGGGBCSCTTCHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHH
T ss_pred             CccccCCCCCCCeEEEEeCceEECHHHhcCCccchHHHHHHHHHhHH----------HHHHHHHHHH----HHHHHHHHH
Confidence            4555431     456788875   56788988889887776667776          7888888888    6665543  


Q ss_pred             -------cccceeeeeeccc---ccccccccccC
Q psy5139         192 -------GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 -------~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                             +||+||++||.||   +||.++++++|
T Consensus       300 ~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar  333 (428)
T 2wbi_A          300 ERATQRIAFKKKLYAHEVVAHWIAESRIAIEKIR  333 (428)
T ss_dssp             HHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhCcccCCChhhhHHHHHHHHHHHHHHHHHH
Confidence                   4999999999999   99999999886

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}

Probab=99.68  E-value=3.6e-20  Score=151.87  Aligned_cols=198  Identities=16%  Similarity=0.112  Sum_probs=136.7

Q ss_pred             CccccccCCCCCCCCC-CCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHH--HHhcCChhH---HHHHHHHHHhCCce-
Q psy5139           2 TTLLGVEIPQEYGGPG-LSFMTDILIVEEIARVDPSVSILVDIQNTLVNDL--IIKLGTTEQ---KEKYLPRLAQTDLM-   74 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g-~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~--l~~~g~~~~---~~~~l~~l~~g~~~-   74 (216)
                      .||+++.+|++|||.| .++.+.+.+.||+++.+.+++..+..+.......  +..+|+++|   +++|++++.+|+.+ 
T Consensus        62 ~Gl~~l~~P~~~GG~gl~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~  141 (439)
T 3m9v_A           62 DGLMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVV  141 (439)
T ss_dssp             TTGGGTTSCGGGTSCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCE
T ss_pred             CCCccCCCChhhCCCCCCCHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceE
Confidence            5999999999999999 8999999999999999988877666554334433  346799999   99999999999965 


Q ss_pred             eeecCCCCCCCC---------c-----------cHHHHHHHHHHHHhhCC-----Cce-eEeeechh--hhHHHHHhcCC
Q psy5139          75 GVEIPQEYGGPG---------L-----------SFMTDILIVEEIARVDP-----SVS-ILVDIQNT--LVNDLIIKLGT  126 (216)
Q Consensus        75 ~~~~~e~~gG~~---------~-----------~~~~~~~v~e~lar~~~-----~~~-~~v~~~~~--~~~~~~~~~g~  126 (216)
                      +.+++|+..+..         +           ....+++++  +++++.     .++ |+|+.+.+  .+.....++|.
T Consensus       142 ~~a~tEp~~~~~~~~t~~~~g~vlnG~K~~~s~a~~Ad~~~v--~art~~~~~~~g~~~flVp~~~pGv~i~~~~~~~G~  219 (439)
T 3m9v_A          142 CSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVI--NARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGM  219 (439)
T ss_dssp             EEECEECTTCCCEEEECSSSCEEEEEEEEEETTGGGCSEEEE--CEEECC--CCCCEEEEEEETTCTTEEECCCCCCSSC
T ss_pred             EEeecCCCCCCCceeeccCCEEEEEeEEEeecCccccCEEEE--EEEecCCCCCceeEEEEEECCCCCeEECCCcccCCc
Confidence            788888865321         0           011233344  566543     133 67876542  22222344553


Q ss_pred             H--HHhhhhchhc---cccccc--ccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeee----ccccc
Q psy5139         127 T--EQKEKYLPRL---AQTDVS--RTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVS----CGLSL  195 (216)
Q Consensus       127 ~--~~~~~~l~~~---~~~~lg--~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~----~~fg~  195 (216)
                      +  ...+.+|+++   .+++++  .++.|+.......+..+          ..+++..+|.    ++.+++    ++-+|
T Consensus       220 ~~~~~~~v~fddv~VP~~~~lg~~~~g~g~~~~~~~~~~~r----------~~~aa~~~G~----a~~al~~a~~~a~~r  285 (439)
T 3m9v_A          220 RASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSS----------VSVLGVYVGV----AQAAYDTAVAALERR  285 (439)
T ss_dssp             TTSCCEEEEEEEEEECGGGEEECCC--CCCGGGHHHHHHHH----------GGGHHHHHHH----HHHHHHHHHHHHHTC
T ss_pred             CCCCceeEEEeeeEcCHHHccCCCCCCchHHHHhhchHHHH----------HHHHHHHHHH----HHHHHHHHHHHHcCC
Confidence            3  4456778874   467787  66666654332233344          7777788888    665554    45799


Q ss_pred             eeeeeeccc---ccccccccccC
Q psy5139         196 QILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       196 ~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      ||.+||.||   +||.++++++|
T Consensus       286 ~i~~~~~vq~~la~~~~~~~aar  308 (439)
T 3m9v_A          286 PEPPQAAALTLVAEIDSRLYALR  308 (439)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999   99999999887

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*

Probab=99.62  E-value=1.3e-19  Score=147.86  Aligned_cols=194  Identities=15%  Similarity=0.002  Sum_probs=128.6

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCc-eeeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDL-MGVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~-~~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+...+.||+++.+.++++.+..+ .+....+..+++++|+++|++.   ++. .+.++++
T Consensus        75 ~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~tp  150 (422)
T 2jbr_A           75 IGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSLL-CTHSHQIAMFSKQLQDEIWLKD---PDATASSSIAP  150 (422)
T ss_dssp             TTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHTTSCHHHHHHHHTTC---TTCCEEEECSC
T ss_pred             CCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCcCHHHHHHHH-HHHHHHHHhCCHHHHHHHHccC---CCeEEEeecCC
Confidence            5999999999999999999999999999999999887655544 3566678889999999999985   554 3455442


Q ss_pred             C------CCCCCcc---------HHHHHHHHHHHHhhCC-----Cc-eeEeeechhhhHHHHHhcCCH--HHhhhhchhc
Q psy5139          81 E------YGGPGLS---------FMTDILIVEEIARVDP-----SV-SILVDIQNTLVNDLIIKLGTT--EQKEKYLPRL  137 (216)
Q Consensus        81 ~------~gG~~~~---------~~~~~~v~e~lar~~~-----~~-~~~v~~~~~~~~~~~~~~g~~--~~~~~~l~~~  137 (216)
                      .      .+|.-++         ...+.+++  +++++.     ++ .|+|+.+...+.....++|.+  ...+.+|+++
T Consensus       151 ~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v--~a~~~~~~g~~g~~~flV~~~gv~v~~~~~~~G~r~~~~~~v~fddv  228 (422)
T 2jbr_A          151 FGKVEEVEGGIILNGDYGWSSGCDHAEYAIV--GFNRFDADGNKIYSFGVIPRSDYEIVDNWYAQAIKSSGSKMLKLVNV  228 (422)
T ss_dssp             CSEEEEETTEEEEEEEEEEETTGGGCSEEEE--EEEEECTTSCEEEEEEEEEGGGCEEECCCCBSSSGGGCCEEEEEEEE
T ss_pred             CeeEEEeCCEEEEeeeEeeecCCccccEEEE--EEEecCCCCCceeEEEEEEcCceEEeCCccccCcCCCCCCcEEEeeE
Confidence            1      1111110         11233344  566532     23 367776532222222445644  3455677775


Q ss_pred             ---cccccccc--------ccc-----hhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeee--------c--
Q psy5139         138 ---AQTDVSRT--------SRG-----YKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVS--------C--  191 (216)
Q Consensus       138 ---~~~~lg~~--------~~g-----~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~--------~--  191 (216)
                         .+++++.+        +.|     +......+...|          ..+++..+|.    ++.+++        +  
T Consensus       229 ~VP~~~~lg~~~~~~g~~~g~g~~~~~~~~~~~~~~~~r----------~~~aa~~lG~----a~~al~~a~~ya~~R~~  294 (422)
T 2jbr_A          229 FIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTPYRPYFA----------SGFSAVSLGI----AERMIEAFKEKQRNRVR  294 (422)
T ss_dssp             EEEGGGEEEHHHHHHTCSTTTTSCTTCSSSSSCHHHHHT----------THHHHHHHHH----HHHHHHHHHHHHTTCBC
T ss_pred             EecHHHeecccccccCCCCcccccCCCcccccchHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhcCCC
Confidence               45667654        444     333333444445          7778888887    555442        2  


Q ss_pred             -cccceeeeeeccc---ccccccccccC
Q psy5139         192 -GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 -~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                       +||+||++||.||   +||.++++++|
T Consensus       295 ~~fG~~i~~~q~vq~~la~~~~~~~aar  322 (422)
T 2jbr_A          295 AYTGANVGLATPALMRIAESTHQVAAAR  322 (422)
T ss_dssp             TTTCCBCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccccCHHHHHHHHHHHHHHHHHH
Confidence             7999999999999   99999999876

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A

Probab=99.58  E-value=8.1e-19  Score=141.97  Aligned_cols=194  Identities=13%  Similarity=0.039  Sum_probs=126.8

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCc-eeeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDL-MGVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~-~~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+.++++.+..+. +....+..+++++|+++|++   +++. .+.++++
T Consensus        47 ~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~tp  122 (394)
T 2rfq_A           47 TGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIG-VHNWHLALFSQQAQEDVWGN---DTDVRISSSYAP  122 (394)
T ss_dssp             HTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTSCHHHHHHHHSS---CTTCCEEEECSC
T ss_pred             CCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHHHHH-HHHHHHHhCCHHHHHHHhCC---CCCeEEEeccCC
Confidence            48999999999999999999999999999999988876655443 56667788999999999988   5654 3555542


Q ss_pred             C------CCCCCcc---------HHHHHHHHHHHHhhC--C---Cc-eeEeeechhhhHHHHHhcCCH--HHhhhhchhc
Q psy5139          81 E------YGGPGLS---------FMTDILIVEEIARVD--P---SV-SILVDIQNTLVNDLIIKLGTT--EQKEKYLPRL  137 (216)
Q Consensus        81 ~------~gG~~~~---------~~~~~~v~e~lar~~--~---~~-~~~v~~~~~~~~~~~~~~g~~--~~~~~~l~~~  137 (216)
                      .      .+|.-++         ...+.+++  +++++  +   .+ .|+|+.+...+.....++|.+  ...+..|+++
T Consensus       123 ~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v--~a~~~~~g~~~~~~~flV~~~gv~v~~~~~~~G~~~~~~~~v~fd~v  200 (394)
T 2rfq_A          123 MGAGQVVDGGYTVNGAWAWSSGCDHASWAVL--GGPVIKDGRPVDFVSFLIPREDYRIDDVWNVVGLRGTGSNTVVVEDV  200 (394)
T ss_dssp             SEEEEEETTEEEEEEEEEEETTGGGCSEEEE--EEEEEETTEEEEEEEEEEEGGGCEEECCCCBSSCGGGCCEEEEEEEE
T ss_pred             CceEEEeCCeEEEeeeEeccCCCcccceEEE--eeeecCCCCCCceeEEEEEhhhcEEeCCccccccccCCCCceEEcce
Confidence            1      1111110         11233333  56652  2   23 377776532222223445644  3455677765


Q ss_pred             ---ccccccc--------cc----cchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeee---------c--
Q psy5139         138 ---AQTDVSR--------TS----RGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVS---------C--  191 (216)
Q Consensus       138 ---~~~~lg~--------~~----~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~---------~--  191 (216)
                         .+++++.        ++    .|+......+...|          ..+++..+|.    ++.+++         .  
T Consensus       201 ~Vp~~~~lg~~~~~~g~~~g~~~~~g~~~~~~~~~~~r----------~~~aa~~~G~----a~~al~~a~~ya~~R~~~  266 (394)
T 2rfq_A          201 FVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHP----------TTISAPIVGM----AYGAYDAHVEHQGKRVRA  266 (394)
T ss_dssp             EEEGGGEEEHHHHHTTCCGGGTTCCCGGGGSCHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred             EcChHHhcccccccccCCCCcccCCCccccccHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHhccCCcC
Confidence               4566654        22    22333333333444          7778888888    555542         2  


Q ss_pred             -cccceeeeeeccc---ccccccccccC
Q psy5139         192 -GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 -~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                       +||+||++||.||   +||.++++++|
T Consensus       267 ~~fG~~i~~~q~vq~~la~~~~~~~aar  294 (394)
T 2rfq_A          267 AFAGEKAKDDPFAKVRIAEASSDIDAAW  294 (394)
T ss_dssp             SCTTCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccccCHHHHHHHHHHHHHHHHHH
Confidence             8999999999999   99999999876

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}

Probab=99.58  E-value=4.1e-19  Score=144.56  Aligned_cols=194  Identities=14%  Similarity=0.056  Sum_probs=128.4

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCc-eeeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDL-MGVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~-~~~~~~e   80 (216)
                      .||+++.+|++|||.|+++.+.+.+.||+++.+.+++..+..+. +....+..+++++|+++|++   +++. .+.++++
T Consensus        60 ~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~tp  135 (414)
T 2or0_A           60 SGAIRLLQPRLYGGYEVHPREFAETVMGVAALDGASGWVTGIVG-VHPWELAFADPQVQEEIWGE---DNDTWMASPYAP  135 (414)
T ss_dssp             HTGGGTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHT-THHHHHTTSCHHHHHHHHSS---CTTCCEECCCSC
T ss_pred             CCCchhcCchhhCCCCCCHHHHHHHHHHHHhhChHHHHHHHHHH-HHHHHHHhCCHHHHHHHHcc---CCCeEEEeccCC
Confidence            48999999999999999999999999999999988876555443 56677889999999999998   5664 3455441


Q ss_pred             C------CCCCCcc---------HHHHHHHHHHHHhhC---C-----Cc-eeEeeechhhhH-HHHHhcCCH--HHhhhh
Q psy5139          81 E------YGGPGLS---------FMTDILIVEEIARVD---P-----SV-SILVDIQNTLVN-DLIIKLGTT--EQKEKY  133 (216)
Q Consensus        81 ~------~gG~~~~---------~~~~~~v~e~lar~~---~-----~~-~~~v~~~~~~~~-~~~~~~g~~--~~~~~~  133 (216)
                      .      .+|.-++         ...+.+++  +++++   .     ++ .|+|+.+...+. ....++|.+  ...+.+
T Consensus       136 ~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v--~a~~~~~~g~~~~~g~~~flV~~~gv~v~~~~~~~~G~r~~~~~~v~  213 (414)
T 2or0_A          136 MGVATPVDGGYVLKGRWSFSSGTDHCQWAFL--GAMVGDGEGGIATPSSLHVILPRTDYQIVEDTWDVIGLRGTGSKDLI  213 (414)
T ss_dssp             CEEEEEETTEEEEEEEEEEETTGGGCSEEEE--EEEECC-----CCCSEEEEEEEGGGCEEETTCCCBSSCGGGCCEEEE
T ss_pred             CceeEEECCeEEEEeeEeccCCCchhhEEEE--EEEecCCCCCcccceeEEEEEEhhhcEEecCCCccccCcccCCCcEE
Confidence            1      1111110         11233333  55553   1     33 377877532222 234455644  345567


Q ss_pred             chhc---ccccccc--------cc----cchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec-------
Q psy5139         134 LPRL---AQTDVSR--------TS----RGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC-------  191 (216)
Q Consensus       134 l~~~---~~~~lg~--------~~----~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~-------  191 (216)
                      |+++   .+++++.        ++    .|+......+...|          ..+++..+|.    ++.+++.       
T Consensus       214 fd~v~VP~~~~lg~~~~~~g~~~g~~~~~g~~~~~~~~~~~r----------~~~aa~~lG~----a~~al~~a~~ya~~  279 (414)
T 2or0_A          214 VDGAFVPGYRTLNAAKVMDGRAQKEAGRPEPLFNMPYSCMFP----------LGITAAVIGI----TEGALACHIAVQKD  279 (414)
T ss_dssp             EEEEEEEGGGEEEHHHHHHSHHHHHHTCSCSGGGSCHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHTT
T ss_pred             EccEEecHHHeeccccccccCCCccccCCCccccccHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhc
Confidence            7775   4566764        22    23333333344444          7778888888    5555533       


Q ss_pred             --cc-cceeeeeeccc---ccccccccccC
Q psy5139         192 --GL-SLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       192 --~f-g~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                        +| |+||++||.||   +||.+.++++|
T Consensus       280 R~~f~G~~i~~~q~vq~~la~~~~~~~aar  309 (414)
T 2or0_A          280 RVAITGQKIKEDPYVLSAIGESAAEINASR  309 (414)
T ss_dssp             CBCTTSCBGGGCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCccccCHHHHHHHHHHHHHHHHHH
Confidence              48 99999999999   99999999876

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*

Probab=99.53  E-value=9.7e-18  Score=140.09  Aligned_cols=192  Identities=14%  Similarity=0.098  Sum_probs=136.6

Q ss_pred             CccccccC--CCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCc------
Q psy5139           2 TTLLGVEI--PQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDL------   73 (216)
Q Consensus         2 ~G~~~~~~--p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~------   73 (216)
                      .||+++.+  |++|||.+.......++.++.+    ........+. .+.+.|..++ ++|+++|+|++.++++      
T Consensus        98 ~Gl~~l~~~~p~~~Gg~~~~~~~~~~~~~~~~----~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~sge~~p~~~~  171 (541)
T 3djl_A           98 NRVHNLAWEEDARSGAFVARAARFMLHAQVEA----GSLCPITMTF-AATPLLLQML-PAPFQDWTTPLLSDRYDSHLLP  171 (541)
T ss_dssp             TTTTTGGGSTTCCTTHHHHHHHHHHHHHHHCS----TTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHTCSCCCCCSSC
T ss_pred             CCcccCCCCCCCCCCcHHHHHHHHHHHHHHHH----hhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHhCCCccccccc
Confidence            48999999  7999976555444444444322    2222222233 4566788899 9999999999999986      


Q ss_pred             --------eeeecCCCCCCCCccHHH-------------------------HHHHHHHHHhhCCCce-eEeeechh----
Q psy5139          74 --------MGVEIPQEYGGPGLSFMT-------------------------DILIVEEIARVDPSVS-ILVDIQNT----  115 (216)
Q Consensus        74 --------~~~~~~e~~gG~~~~~~~-------------------------~~~v~e~lar~~~~~~-~~v~~~~~----  115 (216)
                              .+++++|+.+|||+..+.                         +.+++  ++|++.+++ |+|+.+.+    
T Consensus       172 ~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~Sa~~Ad~~lV--lArt~~Gis~flVp~~~p~~~~  249 (541)
T 3djl_A          172 GGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSVPQSDAHLV--LAQTAGGLSCFFVPRFLPDGQR  249 (541)
T ss_dssp             GGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEECTTSSEEEE--EEEETTEEEEEEEESBCTTSCB
T ss_pred             ccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeecccccCEEEE--EEEECCceEEEEEecCCCCCCc
Confidence                    588999999999864211                         23333  566655554 67776532    


Q ss_pred             --h-hHHHHHhcCCH--HHhhhhchhcccccccccccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeee
Q psy5139         116 --L-VNDLIIKLGTT--EQKEKYLPRLAQTDVSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVS  190 (216)
Q Consensus       116 --~-~~~~~~~~g~~--~~~~~~l~~~~~~~lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~  190 (216)
                        + +.....++|.+  ...+.+|+++.++++|+++.|++.+...++..|          ..+++..+|.    ++.+++
T Consensus       250 ~Gv~i~~~~~~~G~rgt~s~~v~fddv~~~llG~~g~G~~~~~~~l~~~R----------l~~aa~~~G~----a~~al~  315 (541)
T 3djl_A          250 NAIRLERLKDKLGNRSNASCEVEFQDAIGWLLGLEGEGIRLILKMGGMTR----------FDCALGSHAM----MRRAFS  315 (541)
T ss_dssp             CSEEEEEECCCSSCTTSCEEEEEEEEEEEEEESSTTCHHHHTHHHHHHHH----------HHHHHHHHHH----HHHHHH
T ss_pred             CCeEEeeccccCCCcCCceeEEEEccceeeeeecCCchHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHH
Confidence              1 22233456765  456788999888899999999998888877777          8888888888    555553


Q ss_pred             c---------cccceeeeeeccc---ccccccccccC
Q psy5139         191 C---------GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       191 ~---------~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      .         +||+||.+||.||   +||.++++++|
T Consensus       316 ~a~~ya~~R~~fG~~i~~~p~vq~~La~~~~~~eaar  352 (541)
T 3djl_A          316 LAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQT  352 (541)
T ss_dssp             HHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCccCCCchhhCHHHHHHHHHHHHHHHHHH
Confidence            3         4999999999999   99999998876

>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}

Probab=99.40  E-value=1.7e-13  Score=111.11  Aligned_cols=121  Identities=40%  Similarity=0.594  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccc
Q psy5139          60 QKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQ  139 (216)
Q Consensus        60 ~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~  139 (216)
                      .+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++++++..+.......+..+|+++|++.|++.+.+
T Consensus        61 ~~~~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~  140 (404)
T 2jif_A           61 MEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT  140 (404)
T ss_dssp             CCHHHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence            45679999999999999999999999999999999999999988776554433333445677789999999999998766


Q ss_pred             ccc-----cccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         140 TDV-----SRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       140 ~~l-----g~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      +.+     .+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       141 g~~~~~a~tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~~is~a~~Ad  187 (404)
T 2jif_A          141 EKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAG  187 (404)
T ss_dssp             TCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCS
T ss_pred             CCcceEEecCCCCCCChhhceeEEEEeCCEEEEEeEEEeecCCcccC
Confidence            543     466777765444444445 88999999999999988765

>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*

Probab=99.39  E-value=1.8e-13  Score=110.31  Aligned_cols=122  Identities=28%  Similarity=0.403  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+.+..+.......+..+|+++|++.|++.+.
T Consensus        38 ~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~  117 (387)
T 2d29_A           38 AFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLA  117 (387)
T ss_dssp             CCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            35668999999999999999999999999999999999999999887655443332345567788999999999999876


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       118 ~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad  166 (387)
T 2d29_A          118 SGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAG  166 (387)
T ss_dssp             TSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCS
T ss_pred             CCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCCCCcCC
Confidence            653      3467777776544445555 88999999999999987654

>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*

Probab=99.39  E-value=2.2e-13  Score=110.39  Aligned_cols=122  Identities=16%  Similarity=0.193  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCc-eeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSV-SILVDIQNTLVNDLIIKLGTTEQKEKYLPRL  137 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~-~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~  137 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++ ++....+.......+..+|+++|++.|++.+
T Consensus        57 ~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~  136 (403)
T 3p4t_A           57 EIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPT  136 (403)
T ss_dssp             SCCHHHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHHHHHHHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHH
T ss_pred             CCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHH
Confidence            356789999999999999999999999999999999999999999886 4433333334456678899999999999987


Q ss_pred             cccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         138 AQTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       138 ~~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      .++.      +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       137 ~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad  186 (403)
T 3p4t_A          137 LRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRAD  186 (403)
T ss_dssp             HTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCS
T ss_pred             hCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEEEEEEEEecCCcccC
Confidence            6653      3467777776555555555 88999999999999988765

>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}

Probab=99.38  E-value=2.2e-13  Score=109.27  Aligned_cols=122  Identities=32%  Similarity=0.467  Sum_probs=97.1

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+.+..+.......+..+|+++|++.|++.+.
T Consensus        34 ~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~  113 (372)
T 2dvl_A           34 EYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLA  113 (372)
T ss_dssp             CCCHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHH
T ss_pred             CCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHh
Confidence            45678999999999999999999999999999999999999999887654443332244566788999999999999876


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       114 ~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad  162 (372)
T 2dvl_A          114 RGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAH  162 (372)
T ss_dssp             TTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCS
T ss_pred             CCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCCCcCC
Confidence            653      3467777776544445555 88999999999999988755

>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1

Probab=99.37  E-value=2.5e-13  Score=109.25  Aligned_cols=121  Identities=27%  Similarity=0.351  Sum_probs=96.2

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+.+..+ ......+..+|+++|++.|++.+.
T Consensus        36 ~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~  114 (379)
T 1ukw_A           36 EVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLT  114 (379)
T ss_dssp             CCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGT
T ss_pred             CCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhCchHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHh
Confidence            3567899999999999999999999999999999999999999988765443333 344566788999999999999887


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       115 ~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad  163 (379)
T 1ukw_A          115 EKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAE  163 (379)
T ss_dssp             SSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred             CCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccCCCcCC
Confidence            653      3466677765444444555 88999999999999987654

>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A

Probab=99.37  E-value=1.3e-13  Score=111.42  Aligned_cols=122  Identities=27%  Similarity=0.479  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+.+..+.......+..+|+++|++.|++.+.
T Consensus        50 ~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~  129 (396)
T 3ii9_A           50 TTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLA  129 (396)
T ss_dssp             CCCTHHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHHHHHTTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHh
Confidence            45678999999999999999999999999999999999999999877554333333334456788999999999999886


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       130 ~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad  178 (396)
T 3ii9_A          130 TGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIAD  178 (396)
T ss_dssp             HTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEEEEEETGGGCS
T ss_pred             CCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEEeECCCccCC
Confidence            653      3567778776544445555 88999999999999988765

>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*

Probab=99.37  E-value=2.8e-13  Score=109.35  Aligned_cols=122  Identities=24%  Similarity=0.379  Sum_probs=97.1

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+++..+.......+..+|+++|++.|++.+.
T Consensus        37 ~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~  116 (391)
T 2vig_A           37 LFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFT  116 (391)
T ss_dssp             CCCHHHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGS
T ss_pred             CCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            35668999999999999999999999999999999999999999887654443332244566788999999999999886


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       117 ~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad  165 (391)
T 2vig_A          117 SGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEAS  165 (391)
T ss_dssp             SSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCS
T ss_pred             CCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecCCCcCC
Confidence            653      2567777766544445555 88999999999999987654

>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}

Probab=99.36  E-value=2.5e-13  Score=109.77  Aligned_cols=122  Identities=27%  Similarity=0.387  Sum_probs=97.5

Q ss_pred             hhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139          58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL  137 (216)
Q Consensus        58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~  137 (216)
                      ...+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+++..+ ......+..+|+++|++.|++.+
T Consensus        49 ~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~  127 (393)
T 3pfd_A           49 ARFPEEALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVDCSASLIPAVN-KLGTMGLILRGSEELKKQVLPAV  127 (393)
T ss_dssp             TCCCHHHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH-HHTTHHHHHHCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHHHhhCchHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHH
Confidence            34667899999999999999999999999999999999999999988765533222 23345577889999999999988


Q ss_pred             cccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         138 AQTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       138 ~~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      .++.      +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       128 ~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad  177 (393)
T 3pfd_A          128 ASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKST  177 (393)
T ss_dssp             HTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCS
T ss_pred             hCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEEecCCcccC
Confidence            6653      3567777776555555555 88999999999999988755

>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}

Probab=99.36  E-value=1.8e-13  Score=110.21  Aligned_cols=122  Identities=30%  Similarity=0.476  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+.+..+.......+..+|+++|++.|++.+.
T Consensus        42 ~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~  121 (385)
T 2eba_A           42 VFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLA  121 (385)
T ss_dssp             CCCGGGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHHHHHhCchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHh
Confidence            45677899999999999999999999999999999999999999887665443333344566778999999999999886


Q ss_pred             ccc------ccccccchhh-hhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKA-LEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~-~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++. .....+..+ +++|+|||+|.|++++..++
T Consensus       122 ~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad  171 (385)
T 2eba_A          122 RGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAH  171 (385)
T ss_dssp             TTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEEEEEETTTTCS
T ss_pred             CCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeeeeccCCCcccC
Confidence            653      2466777665 333344445 78999999999999987654

>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1

Probab=99.36  E-value=3.3e-13  Score=108.06  Aligned_cols=121  Identities=18%  Similarity=0.209  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+++..+.......+. +|+++|++.|++.+.
T Consensus        24 ~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~-~g~~~q~~~~l~~~~  102 (366)
T 1r2j_A           24 ELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMAAWTVQR-LGDAGQRATFLKELT  102 (366)
T ss_dssp             CCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHh
Confidence            3567799999999999999999999999999999999999999988765544333223445667 999999999999886


Q ss_pred             cccc-----cccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTDV-----SRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~l-----g~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.+     .+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       103 ~G~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad  150 (366)
T 1r2j_A          103 SGKLAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYAD  150 (366)
T ss_dssp             CC-CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCS
T ss_pred             CCCeeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccC
Confidence            5533     456777776544445555 88999999999999988755

>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}

Probab=99.36  E-value=3e-13  Score=109.63  Aligned_cols=122  Identities=20%  Similarity=0.238  Sum_probs=96.2

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhh-CCCceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARV-DPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL  137 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~-~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~  137 (216)
                      +.+.++++.+.+.|++++.+||++||.+.+..+...+.|++++. ++++++.+..+.......+..+|+++|++.|++.+
T Consensus        60 ~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~  139 (403)
T 3r7k_A           60 EIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPT  139 (403)
T ss_dssp             SCCTHHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHHHHTTCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHH
Confidence            34568899999999999999999999999999999999999997 66553322222234556778899999999999988


Q ss_pred             cccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         138 AQTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       138 ~~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      .++.      +.+++.|++.....++..+ +++|+|||+|.|++++..++
T Consensus       140 ~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad  189 (403)
T 3r7k_A          140 LAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRAD  189 (403)
T ss_dssp             HTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEETTTTCS
T ss_pred             hCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEEcccCCccCC
Confidence            6653      3467777776555555555 88999999999999988765

>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}

Probab=99.36  E-value=2.5e-13  Score=109.46  Aligned_cols=121  Identities=25%  Similarity=0.387  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+.+..+ ......+..+|+++|++.|++.+.
T Consensus        47 ~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~  125 (387)
T 3nf4_A           47 TYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVH-SLSSHPLLVFGTEEQKKRWLPGML  125 (387)
T ss_dssp             CCCTTHHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTHHHHHHSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHhCchHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHh
Confidence            3567899999999999999999999999999999999999999988765544333 244466778999999999999886


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       126 ~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad  174 (387)
T 3nf4_A          126 SGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKAD  174 (387)
T ss_dssp             TSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCS
T ss_pred             CCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEecccCCcccC
Confidence            653      3567777776554455555 88999999999999988765

>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}

Probab=99.36  E-value=5.4e-13  Score=107.50  Aligned_cols=120  Identities=22%  Similarity=0.357  Sum_probs=96.0

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhC-CCceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVD-PSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL  137 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~-~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~  137 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+ +++.+.+  +.......+..+|+++|++.|++.+
T Consensus        41 ~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~  118 (385)
T 2pg0_A           41 IIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKVGSSLVGIGL--HNDIVTPYIASYGTEEQKQKWLPKC  118 (385)
T ss_dssp             SCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHCGGGHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhCCchHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHH
Confidence            355678999999999999999999999999999999999999998 7765433  3334556778899999999999987


Q ss_pred             cccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         138 AQTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       138 ~~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      .++.      +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       119 ~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad  168 (385)
T 2pg0_A          119 VTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHAD  168 (385)
T ss_dssp             HHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCS
T ss_pred             hCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEecccCCcccC
Confidence            6553      3466777766444444555 88999999999999987654

>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}

Probab=99.36  E-value=1.4e-12  Score=105.98  Aligned_cols=120  Identities=17%  Similarity=0.144  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCce-eEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVS-ILVDIQNTLVNDLIIKLGTTEQKEKYLPRL  137 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~-~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~  137 (216)
                      +.++++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.+.. +....+.......+..+|+++|++.|++.+
T Consensus        58 ~~~~~~~~~l~e~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~  137 (415)
T 4hr3_A           58 PELDSLKAKARAAGLWNLFLPDPELGGGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPL  137 (415)
T ss_dssp             THHHHHHHHHHHTTCSSTTCCCTTTSCCCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHH
T ss_pred             hhHHHHHHHHHhCCCcCcCCCHHHCCCCCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHH
Confidence            3678899999999999999999999999999999999999999764322 211111112235678899999999999988


Q ss_pred             cccc------ccccc-cchhhhhhhhcccc-CCceeeccceeeeecCcc
Q psy5139         138 AQTD------VSRTS-RGYKALEWHAFYGR-TDSLPLNDHLSHISSGCV  178 (216)
Q Consensus       138 ~~~~------lg~~~-~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~  178 (216)
                      .++.      +.+++ .|++.....++..+ +++|+|||+|.|++++..
T Consensus       138 ~~G~~~~~~a~tEp~~~gsd~~~~~t~A~~~g~g~~lnG~K~~is~a~~  186 (415)
T 4hr3_A          138 LEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWWSTGVGH  186 (415)
T ss_dssp             HTTSCEEEEECCCTTSCTTSGGGCCCEEEEETTEEEEEEEEEEEETTTS
T ss_pred             hCCCceeEEEEcCCCCCCCchhhCeeEEEEECCEEEEeeEEeeECCCCC
Confidence            6653      34666 77776555555555 889999999999999955

>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=99.35  E-value=4.7e-13  Score=108.13  Aligned_cols=121  Identities=24%  Similarity=0.291  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+++..+ ......+..+|+++|++.|++.+.
T Consensus        50 ~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~qk~~~l~~~~  128 (393)
T 1rx0_A           50 LFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLC  128 (393)
T ss_dssp             CCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhCcchhHHHHHh-HHHHHHHHHHCCHHHHHHHHHHHh
Confidence            3566899999999999999999999999999999999999999887655433332 234456778999999999999886


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       129 ~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad  177 (393)
T 1rx0_A          129 TMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESD  177 (393)
T ss_dssp             TTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCS
T ss_pred             CCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecCCccCC
Confidence            653      3566777765443444445 88999999999999987765

>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*

Probab=99.34  E-value=4.1e-13  Score=108.57  Aligned_cols=121  Identities=27%  Similarity=0.323  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+++ .+.......+..+|+++|++.|++.+.
T Consensus        47 ~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~  125 (396)
T 1egd_A           47 EYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMT  125 (396)
T ss_dssp             CCCHHHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHhhCccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHh
Confidence            3556789999999999999999999999999999999999999988766543 333344455778999999999999876


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       126 ~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad  174 (396)
T 1egd_A          126 EEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN  174 (396)
T ss_dssp             HSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETTTTCS
T ss_pred             CCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEcccCCcccC
Confidence            553      3466777765444344445 78999999999999987654

>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}

Probab=99.33  E-value=7.4e-13  Score=107.30  Aligned_cols=120  Identities=24%  Similarity=0.351  Sum_probs=96.9

Q ss_pred             HH-HHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          60 QK-EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        60 ~~-~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      .+ .++++.+.+.|++++.+ |++||.+.+..+...+.|++++.+.++.+++..+.......+..+|+++|++.|++.+.
T Consensus        62 ~p~~~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~  140 (403)
T 3sf6_A           62 LPARELAVELGELGLLGMHL-KGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMA  140 (403)
T ss_dssp             CCHHHHHHHHHHTTCSSTTS-CSTTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCcccc-hhhCCCCCCHHHHHHHHHHHHHhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHh
Confidence            45 78999999999999999 99999999999999999999999887654443333344567888999999999999886


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++.....++..+ +++|+|||+|.|++++..++
T Consensus       141 ~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad  189 (403)
T 3sf6_A          141 SGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVAD  189 (403)
T ss_dssp             TTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETGGGCS
T ss_pred             CCCceEEEEEccCCCCCCchhcEEEEEEECCEEEEEEEEEeecCCcccC
Confidence            653      3567777776555555555 88999999999999988765

>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1

Probab=99.33  E-value=4.9e-13  Score=108.02  Aligned_cols=118  Identities=25%  Similarity=0.487  Sum_probs=94.7

Q ss_pred             HHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccccc-
Q psy5139          63 KYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTD-  141 (216)
Q Consensus        63 ~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~-  141 (216)
                      ++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+.+..+.......+..+|+++|++.|++.+.++. 
T Consensus        50 ~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~  129 (394)
T 1ivh_A           50 EFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEY  129 (394)
T ss_dssp             HHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhchhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCe
Confidence            7899999999999999999999999999999999999999887655443332245567788999999999999886654 


Q ss_pred             -----ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         142 -----VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       142 -----lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                           +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       130 ~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~~~Ad  174 (394)
T 1ivh_A          130 IGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDAD  174 (394)
T ss_dssp             CEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETGGGCS
T ss_pred             EEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCCCCcCC
Confidence                 3466777766544445545 78999999999999987655

>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*

Probab=99.32  E-value=7.4e-13  Score=108.27  Aligned_cols=121  Identities=30%  Similarity=0.390  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      +.+.++++.+.+.|++++.+| ++||.+.+..+...+.|++++.+.++.+++..+.......+..+|+++|++.|++.+.
T Consensus        86 ~~p~~~~~~l~e~Gl~~l~~p-e~GG~G~~~~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~  164 (436)
T 2ix5_A           86 EFPFHITPKLGAMGVAGGSIK-GYGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLA  164 (436)
T ss_dssp             CCCGGGHHHHHTTTCTTTTCC-STTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCcCcCC-CCCCCCCCHHHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            456778999999999999999 8999999999999999999999877554333333345566778999999999999887


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       165 ~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a~~Ad  213 (436)
T 2ix5_A          165 QLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFAD  213 (436)
T ss_dssp             TTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCS
T ss_pred             CCCeeeEEEecCCCCCCCcccceEEEEEeCCEEEEeeeccCCCCCcccC
Confidence            653      3466777766544445555 88999999999999987655

>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1

Probab=99.31  E-value=8.1e-13  Score=106.37  Aligned_cols=122  Identities=25%  Similarity=0.381  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCC---ccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhch
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPG---LSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLP  135 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~---~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~  135 (216)
                      ..+.++++.+.+.|++++.+||++||.+   .+..+...+.|++++.+.++.+.+..+.......+..+|+++|++.|++
T Consensus        36 ~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~  115 (383)
T 1buc_A           36 IYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLV  115 (383)
T ss_dssp             CCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHH
T ss_pred             CCCHHHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHHHhhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHH
Confidence            3556789999999999999999999999   9999999999999999887655444332345567788999999999999


Q ss_pred             hccccc------ccccccchhhhhhhhcccc--CCceeeccceeeeecCcccC
Q psy5139         136 RLAQTD------VSRTSRGYKALEWHAFYGR--TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       136 ~~~~~~------lg~~~~g~~~~~~~~~~~~--~~~~~l~g~k~~va~~~~g~  180 (216)
                      .+.++.      +.+++.|++......+..+  +++|+|||+|.|++++..++
T Consensus       116 ~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~~s~~~~Ad  168 (383)
T 1buc_A          116 PLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAAD  168 (383)
T ss_dssp             HHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEETTTTCS
T ss_pred             HHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEeccCCCCcCC
Confidence            876553      3467777765433333333  57899999999999988755

>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}

Probab=99.30  E-value=1e-12  Score=106.34  Aligned_cols=121  Identities=23%  Similarity=0.313  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      +.+.++++.+.+.|++++.+ |++||.+.+..+...+.|++++.+.++.+++..+.......+..+|+++|++.|++.+.
T Consensus        57 ~~~~~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~  135 (399)
T 3swo_A           57 TLPSELAKEFGNLGVLGMHL-QGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLA  135 (399)
T ss_dssp             CCCTTHHHHHHHHTCTTTTS-CSTTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCcCCh-hhhCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHh
Confidence            35578899999999999999 99999999999999999999999887654333333345667888999999999999876


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       136 ~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad  184 (399)
T 3swo_A          136 AGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLAD  184 (399)
T ss_dssp             HTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCS
T ss_pred             CCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEEEeECCCCccC
Confidence            553      3467777776555555555 88999999999999987755

>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}

Probab=99.29  E-value=5.2e-12  Score=106.67  Aligned_cols=122  Identities=24%  Similarity=0.362  Sum_probs=94.8

Q ss_pred             hhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139          58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL  137 (216)
Q Consensus        58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~  137 (216)
                      ...+.++++.+.+.|++++.+||++||.+.+..+...+.|++ +.+.++++.+..+......++..+|+++|++.|++.+
T Consensus        59 ~~~p~~~~~~l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel-~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l  137 (577)
T 2z1q_A           59 LELNVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEEL-SGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKL  137 (577)
T ss_dssp             GGGHHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHH-TTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHH
T ss_pred             CCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH-hhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999 6677655444333333345678899999999999998


Q ss_pred             cccc------ccccccchhhhhhhhcccc---CCceeeccceeeeecCcccC
Q psy5139         138 AQTD------VSRTSRGYKALEWHAFYGR---TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       138 ~~~~------lg~~~~g~~~~~~~~~~~~---~~~~~l~g~k~~va~~~~g~  180 (216)
                      .++.      +.+++.|++......+..+   +++|+|||+|.|++++..++
T Consensus       138 ~~G~~~~a~alTEp~aGSD~~~~~t~A~~~~dG~~~vLnG~K~~it~a~~Ad  189 (577)
T 2z1q_A          138 ASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAH  189 (577)
T ss_dssp             HHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCS
T ss_pred             hCCCeEEEEEecCCCCCCCcccCeeEEEEeCCCCEEEEEEEeeCCCCCCccC
Confidence            6653      3567778765433333322   45799999999999988654

>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*

Probab=99.28  E-value=6.3e-13  Score=107.51  Aligned_cols=120  Identities=23%  Similarity=0.461  Sum_probs=95.6

Q ss_pred             HH-HHHHHHHHhCCceeeecCCCCCCCCc--cHHHHHHHHHHHHhhCCCceeEeeechhhhHH-HHHhcCCHHHhhhhch
Q psy5139          60 QK-EKYLPRLAQTDLMGVEIPQEYGGPGL--SFMTDILIVEEIARVDPSVSILVDIQNTLVND-LIIKLGTTEQKEKYLP  135 (216)
Q Consensus        60 ~~-~~~l~~l~~g~~~~~~~~e~~gG~~~--~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~-~~~~~g~~~~~~~~l~  135 (216)
                      .+ .++++.+.+.|++++.+||++||.+.  +..+...+.|++++.+.++.+.+..+ ..... .+..+|++++++.|++
T Consensus        37 ~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~~l~~~g~~~q~~~~l~  115 (397)
T 3mpi_A           37 FPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQLNME-VLGCAYTILTYGSEALKKKYVP  115 (397)
T ss_dssp             CCTTTTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH-TTTTHHHHHHHSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHHHhhCchHHHHHHHH-HHhHHHHHHHhCCHHHHHHHHH
Confidence            45 67899999999999999999999999  89999999999999988765544333 23334 6788999999999999


Q ss_pred             hccccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         136 RLAQTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       136 ~~~~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      .+.++.      +.+++.|++......+..+ +++|+|||+|.|++++..++
T Consensus       116 ~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad  167 (397)
T 3mpi_A          116 KLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQAD  167 (397)
T ss_dssp             HHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEETTTTCS
T ss_pred             HHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEEeeCCCcccC
Confidence            886653      2466677766554555555 88999999999999988765

>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}

Probab=99.26  E-value=7.4e-12  Score=105.90  Aligned_cols=121  Identities=26%  Similarity=0.406  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      +.+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+. ....+..+......++..+|+++|++.|++.+.
T Consensus        65 ~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Eel~~~~~-~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la  143 (597)
T 3owa_A           65 DRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAGG-FAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLA  143 (597)
T ss_dssp             HHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHHHGGGTH-HHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHccch-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            5788999999999999999999999999999999999999998753 222122222333445678999999999999986


Q ss_pred             ccc------ccccccchhhhhhhhccc--c-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYG--R-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~--~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++......+..  + +++|+|||+|.|++++..++
T Consensus       144 ~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLnG~K~~is~a~~Ad  194 (597)
T 3owa_A          144 TGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFAD  194 (597)
T ss_dssp             HTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCS
T ss_pred             CCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEeeEEEEeCCCccCC
Confidence            653      356777877654433333  2 45699999999999988765

>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*

Probab=99.21  E-value=6.9e-12  Score=106.32  Aligned_cols=121  Identities=28%  Similarity=0.348  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccc
Q psy5139          60 QKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQ  139 (216)
Q Consensus        60 ~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~  139 (216)
                      .+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++++.+..+.......+..+|+++|++.|++.+.+
T Consensus        80 ~p~~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~  159 (607)
T 2uxw_A           80 VEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLAS  159 (607)
T ss_dssp             CCHHHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence            45678999999999999999999999999999999999999988765543333322335677889999999999998876


Q ss_pred             cc------ccccccchhhhhhhhcccc---CCceeeccceeeeecCcccC
Q psy5139         140 TD------VSRTSRGYKALEWHAFYGR---TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       140 ~~------lg~~~~g~~~~~~~~~~~~---~~~~~l~g~k~~va~~~~g~  180 (216)
                      +.      +.+++.|++......+..+   +++|+|||+|.|++++..++
T Consensus       160 G~~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~LnG~K~~is~~~~Ad  209 (607)
T 2uxw_A          160 GETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLAD  209 (607)
T ss_dssp             TSSCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCS
T ss_pred             CCeEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEEeEEEeecCCcccC
Confidence            54      3467777765333333332   34799999999999987654

>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*

Probab=99.19  E-value=2.6e-11  Score=99.24  Aligned_cols=115  Identities=17%  Similarity=0.223  Sum_probs=88.7

Q ss_pred             HHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc--c
Q psy5139          62 EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA--Q  139 (216)
Q Consensus        62 ~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~--~  139 (216)
                      .++++.+.+.|++++.+||++||.+.+..+...+.|++++.++++++.+..+ ......+..+|+++|++.|++.+.  +
T Consensus        46 ~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~~~  124 (439)
T 2c12_A           46 RPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVAT-ALGLMPVILCDSPSLQEKFLKPFISGE  124 (439)
T ss_dssp             HHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHHHHHTTCCTTHHHHHHH-HHHHHHHHHSSCHHHHHHHTGGGGSSC
T ss_pred             HHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhhChHHHHHHHHh-HHHHHHHHHhCCHHHHHHHHHHHhhcC
Confidence            7889999999999999999999999999999999999999988766543333 233456778999999999999876  3


Q ss_pred             cc------ccccccchh-----hhhhhhcccc-CCceeeccceeeeecCc
Q psy5139         140 TD------VSRTSRGYK-----ALEWHAFYGR-TDSLPLNDHLSHISSGC  177 (216)
Q Consensus       140 ~~------lg~~~~g~~-----~~~~~~~~~~-~~~~~l~g~k~~va~~~  177 (216)
                      +.      +.+++.|++     .....++..+ +++|+|||+|.|++++.
T Consensus       125 G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g~~lnG~K~~is~~~  174 (439)
T 2c12_A          125 GEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSG  174 (439)
T ss_dssp             SCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTEEEEEEEEECCTTTT
T ss_pred             CCEEEEEEecCCCCCCCccccccccceeEEEEcCCEEEEEeEEEeecCCC
Confidence            42      245655652     2221233344 88999999999999885

>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}

Probab=99.15  E-value=2.1e-11  Score=99.79  Aligned_cols=117  Identities=15%  Similarity=0.153  Sum_probs=89.1

Q ss_pred             hHH--HHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchh
Q psy5139          59 EQK--EKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPR  136 (216)
Q Consensus        59 ~~~--~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~  136 (216)
                      .++  .++++.+.+.|++++.+||++||.+.+..+...+.|++++.++++++.+..+ .....++..+|+++ ++.|++.
T Consensus        43 ~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~-~~~~l~~  120 (438)
T 3mkh_A           43 RFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAILVEECYSVEPSAALTIFAT-GLGLTPINLAAGPQ-HAEFLAP  120 (438)
T ss_dssp             HHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCGG-GHHHHGG
T ss_pred             cCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHh-hHHHHHHHhhCCHH-HHHHHHH
Confidence            455  7899999999999999999999999999999999999999987655433222 23345567789999 8899998


Q ss_pred             cccc---c-----ccccccch-----hhhhhhhcccc-CCceeeccceeeeecCc
Q psy5139         137 LAQT---D-----VSRTSRGY-----KALEWHAFYGR-TDSLPLNDHLSHISSGC  177 (216)
Q Consensus       137 ~~~~---~-----lg~~~~g~-----~~~~~~~~~~~-~~~~~l~g~k~~va~~~  177 (216)
                      +.++   .     +.+++.|+     +......+..+ +++|+|||+|.|+++..
T Consensus       121 ~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g~g~~lnG~K~~is~a~  175 (438)
T 3mkh_A          121 FLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCA  175 (438)
T ss_dssp             GSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEETTEEEEEEEECSCTTTT
T ss_pred             HhcCCCCceEEEEEccCCCCCCccccccccceeEEEEeCCEEEEEeEEEEecCCC
Confidence            8663   2     24566665     23223334444 88999999999999875

>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*

Probab=99.15  E-value=1e-11  Score=100.26  Aligned_cols=121  Identities=24%  Similarity=0.376  Sum_probs=92.1

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+ |++||.+.+..+...+.|++++.+.++.+.+..+.......+..+|+++|++.|++.+.
T Consensus        45 ~~~~~~~~~l~~~Gl~~l~~-~~~GG~g~~~~~~~~~~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~  123 (392)
T 1siq_A           45 VFHREIISEMGELGVLGPTI-KGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLA  123 (392)
T ss_dssp             CCCTHHHHHHHHTTCSSTTC-EETTEECCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCCcccH-HhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHh
Confidence            35667899999999999999 99999999999999999999998876544333332234556778999999999999876


Q ss_pred             ccc------ccccccchhhhhhhhcccc---CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR---TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~---~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++......+..+   +++|+|||+|.|++++..++
T Consensus       124 ~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~Ad  174 (392)
T 1siq_A          124 KGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMAD  174 (392)
T ss_dssp             TTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEEEEETGGGCS
T ss_pred             CCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEEEeecCCcccC
Confidence            653      3566667665433333332   67899999999999987654

>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}

Probab=99.13  E-value=1.4e-11  Score=99.48  Aligned_cols=118  Identities=19%  Similarity=0.229  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCC-ccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHH--HhcCCHHHh---hh
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPG-LSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLI--IKLGTTEQK---EK  132 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~-~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~--~~~g~~~~~---~~  132 (216)
                      +.+.++++.+.+.|++++.+||++||.+ .+..+...+.|++++.+.++.+....+.......+  ..+|+++|+   +.
T Consensus        39 ~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~  118 (395)
T 3mxl_A           39 TFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAER  118 (395)
T ss_dssp             CCCHHHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHH
Confidence            4667899999999999999999999999 89999999999999998876544333322222222  356999999   99


Q ss_pred             hchhccccc------ccccccchhhhhhhhccccCCceeeccceeeeecCcccC
Q psy5139         133 YLPRLAQTD------VSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       133 ~l~~~~~~~------lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~  180 (216)
                      |++.+.++.      +.+++.|...+.    ...+++|+|||+|.|++++..++
T Consensus       119 ~l~~~~~g~~~~~~a~tEp~~~~~~~~----t~~~~g~~lnG~K~~is~a~~Ad  168 (395)
T 3mxl_A          119 LLRAMAEGEAAVCGALKDAPGVVTELH----SDGAGGWLLSGRKVLVSMAPIAT  168 (395)
T ss_dssp             HHHHHHHTSCCEECCCSBCTTCCCEEE----ECSSSCEEEEEEEEEETTGGGCS
T ss_pred             HHHHHhcCCcEEEEEecCCCCCCCceE----EecCCEEEEeeEEEEecCccccC
Confidence            999886553      234554422111    11378999999999999987755

>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}

Probab=99.04  E-value=4.8e-11  Score=97.69  Aligned_cols=119  Identities=20%  Similarity=0.258  Sum_probs=86.3

Q ss_pred             hhHHHHHHHHHHhCCceeeecCCCCCCCC-ccHHHHHHHHHHHHhhCCCceeEeeechhhhHHH--HHhcCCHHH---hh
Q psy5139          58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPG-LSFMTDILIVEEIARVDPSVSILVDIQNTLVNDL--IIKLGTTEQ---KE  131 (216)
Q Consensus        58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~-~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~--~~~~g~~~~---~~  131 (216)
                      ...+.++++.+.+.|++++.+||++||.+ .+..+...+.|++++.+.++.+.+..+.......  +..+|+++|   ++
T Consensus        49 ~~~~~~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~  128 (439)
T 3m9v_A           49 GTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAE  128 (439)
T ss_dssp             TCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            34667899999999999999999999999 8999999999999999877554333332222222  235699998   89


Q ss_pred             hhchhccccc------ccccccchhhhhhhhccccCCceeeccceeeeecCcccC
Q psy5139         132 KYLPRLAQTD------VSRTSRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       132 ~~l~~~~~~~------lg~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~  180 (216)
                      .|++.+.++.      +.+++.+...+.    ...+++|+|||+|.|++++..++
T Consensus       129 ~~l~~l~~g~~~~~~a~tEp~~~~~~~~----t~~~~g~vlnG~K~~~s~a~~Ad  179 (439)
T 3m9v_A          129 RILRGMVAGDAVVCSGIKDHHTAVTTLR----PDGAGGWLLSGRKTLVSMAPVGT  179 (439)
T ss_dssp             HHHHHHHHTCCCEEEECEECTTCCCEEE----ECSSSCEEEEEEEEEETTGGGCS
T ss_pred             HHHHHHhCCCceEEEeecCCCCCCCcee----eccCCEEEEEeEEEeecCccccC
Confidence            9999886553      234443321111    11378899999999999987654

>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}

Probab=99.03  E-value=1.1e-10  Score=95.17  Aligned_cols=117  Identities=21%  Similarity=0.160  Sum_probs=87.5

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCC-ceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPS-VSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL  137 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~-~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~  137 (216)
                      +.++++++.+.+.|++++.+||   |.+.+..+...+.|++++.+.. ..+.+..+.......+..+|+++|++.|++.+
T Consensus        67 ~~~~~~~~~l~~~Gl~~l~~P~---G~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l  143 (428)
T 2wbi_A           67 LVIDKLKEMAKVEGLWNLFLPA---VSGLSHVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPL  143 (428)
T ss_dssp             HHHHHHHHHHHHTTCCSTTCHH---HHCCCHHHHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHH
T ss_pred             ccHHHHHHHHHHCCCCeecCCC---CCCCCHHHHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHH
Confidence            4668899999999999999998   7788899999999999998643 22322221113345677899999999999988


Q ss_pred             cccc------ccccc-cchhhhhhhhcccc-CCceeeccceeeeecCcc
Q psy5139         138 AQTD------VSRTS-RGYKALEWHAFYGR-TDSLPLNDHLSHISSGCV  178 (216)
Q Consensus       138 ~~~~------lg~~~-~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~  178 (216)
                      .++.      +.+++ .|++......+..+ +++|+|||+|.|++++..
T Consensus       144 ~~G~~~~~~a~tEp~~aGsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~  192 (428)
T 2wbi_A          144 LQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSGAGN  192 (428)
T ss_dssp             HHTSSEEEEECCCTTSCTTSGGGCCCEEEEETTEEEEEEEEEEEETTTS
T ss_pred             hCCCeEEEEEEecCCcCCCCcccceEEEEEeCCEEEEEeEEeccCCCCC
Confidence            6653      24666 77776443444445 889999999999999876

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*

Probab=99.01  E-value=2.5e-13  Score=116.22  Aligned_cols=73  Identities=18%  Similarity=0.115  Sum_probs=55.9

Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCCCCCCCC
Q psy5139           8 EIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQEYGGPG   86 (216)
Q Consensus         8 ~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e~~gG~~   86 (216)
                      .+|++||   .+..+...+.|+++   .+++  +..|..++...|..+|+++|+++|+|++.+|+++ +++++|+..|+|
T Consensus        74 ~~p~e~G---~~~~~~~~v~e~~~---~~~~--~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd  145 (659)
T 1w07_A           74 KRIIELR---LNEEEAGRLRHFID---QPAY--VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSN  145 (659)
T ss_dssp             HHHHHTT---CCHHHHHHHHHHHC---CCCH--HHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSC
T ss_pred             HhHHHhC---CCchHHHHHHHHhc---cchh--hhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCC
Confidence            4788887   45667777766664   3433  4445456777889999999999999999999976 689999999987


Q ss_pred             cc
Q psy5139          87 LS   88 (216)
Q Consensus        87 ~~   88 (216)
                      +.
T Consensus       146 ~~  147 (659)
T 1w07_A          146 VQ  147 (659)
T ss_dssp             GG
T ss_pred             cc
Confidence            63

>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*

Probab=98.98  E-value=1.6e-10  Score=94.11  Aligned_cols=114  Identities=14%  Similarity=0.079  Sum_probs=85.1

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+.+..+ ......+..+|+++|++.|++.  
T Consensus        63 ~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~--  139 (422)
T 2jbr_A           63 RVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSLL-CTHSHQIAMFSKQLQDEIWLKD--  139 (422)
T ss_dssp             SCCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHTTSCHHHHHHHHTTC--
T ss_pred             CCCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCcCHHHHHHHH-HHHHHHHHhCCHHHHHHHHccC--
Confidence            3566899999999999999999999999999999999999999988765433322 2344566778999999999985  


Q ss_pred             cccccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTDVSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ...+....  +.   ...+..+ +++|+|||+|.|++++..++
T Consensus       140 g~~~~a~a--~t---p~t~A~~~~~g~~lnG~K~~is~a~~Ad  177 (422)
T 2jbr_A          140 PDATASSS--IA---PFGKVEEVEGGIILNGDYGWSSGCDHAE  177 (422)
T ss_dssp             TTCCEEEE--CS---CCSEEEEETTEEEEEEEEEEETTGGGCS
T ss_pred             CCeEEEee--cC---CCeeEEEeCCEEEEeeeEeeecCCcccc
Confidence            11221111  11   1223334 78999999999999987654

>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}

Probab=98.96  E-value=1.8e-10  Score=93.60  Aligned_cols=114  Identities=13%  Similarity=0.010  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++++++..+ ......+..+|+++|++.|++.  
T Consensus        48 ~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~--  124 (414)
T 2or0_A           48 RLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDGASGWVTGIV-GVHPWELAFADPQVQEEIWGED--  124 (414)
T ss_dssp             SCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH-TTHHHHHTTSCHHHHHHHHSSC--
T ss_pred             CCCHHHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHhCCHHHHHHHHccC--
Confidence            3566899999999999999999999999999999999999999988765543333 2445667788999999999982  


Q ss_pred             cccccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTDVSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ...+....  +.   ...+..+ +++|+|||+|.|++++..++
T Consensus       125 g~~~~a~a--~t---p~t~A~~~~~g~~lnG~K~~is~a~~Ad  162 (414)
T 2or0_A          125 NDTWMASP--YA---PMGVATPVDGGYVLKGRWSFSSGTDHCQ  162 (414)
T ss_dssp             TTCCEECC--CS---CCEEEEEETTEEEEEEEEEEETTGGGCS
T ss_pred             CCeEEEec--cC---CCceeEEECCeEEEEeeEeccCCCchhh
Confidence            12222211  11   1223334 88999999999999987654

>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A

Probab=98.95  E-value=1.8e-10  Score=92.97  Aligned_cols=114  Identities=14%  Similarity=0.054  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.++++.+.+.|++++.+||++||.+.+..+...+.|++++.+.++.+++..+ ......+..+|+++|++.|+++  
T Consensus        35 ~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~--  111 (394)
T 2rfq_A           35 RIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSII-GVHNWHLALFSQQAQEDVWGND--  111 (394)
T ss_dssp             SCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHTTSCHHHHHHHHSSC--
T ss_pred             CCCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHHHH-HHHHHHHHhCCHHHHHHHhCCC--
Confidence            3566899999999999999999999999999999999999999988765443332 2344566778999999999972  


Q ss_pred             cccccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTDVSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ...+....  +.   ...+..+ +++|+|||+|.|++++..++
T Consensus       112 g~~~~~~a--~t---p~t~A~~~~~g~~lnG~K~~is~a~~Ad  149 (394)
T 2rfq_A          112 TDVRISSS--YA---PMGAGQVVDGGYTVNGAWAWSSGCDHAS  149 (394)
T ss_dssp             TTCCEEEE--CS---CSEEEEEETTEEEEEEEEEEETTGGGCS
T ss_pred             CCeEEEec--cC---CCceEEEeCCeEEEeeeEeccCCCcccc
Confidence            11221111  11   1223334 88999999999999987754

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*

Probab=98.68  E-value=3.1e-11  Score=103.27  Aligned_cols=73  Identities=14%  Similarity=0.156  Sum_probs=52.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCCCCCCCCcc
Q psy5139          11 QEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQEYGGPGLS   88 (216)
Q Consensus        11 ~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e~~gG~~~~   88 (216)
                      ++|||.+  ..... +.|++.......++  ..|..++...|..+|+++|+++|+|.+.+|+++ +++++|+.+|+|+.
T Consensus        75 ~~~~~~~--~~~~~-~~~~~~~~~~~~~~--~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~  148 (661)
T 2ddh_A           75 REYGISD--PEEIM-WFKNSVHRGHPEPL--DLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLR  148 (661)
T ss_dssp             HHTTCCC--HHHHH-HHHHHHHTTCCCTT--HHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGG
T ss_pred             HHcCCCC--chHHH-HHHHHhccchhhHH--HHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcc
Confidence            4577765  33333 36676654333333  335556778899999999999999999999976 68999999998863

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1

Probab=98.26  E-value=3.1e-09  Score=87.87  Aligned_cols=147  Identities=14%  Similarity=0.098  Sum_probs=90.1

Q ss_pred             HHHhcCC--hhHHHHHHHHHHhCCce-eeecCCCCCC--------CCc--c------------------H-----HHHHH
Q psy5139          51 LIIKLGT--TEQKEKYLPRLAQTDLM-GVEIPQEYGG--------PGL--S------------------F-----MTDIL   94 (216)
Q Consensus        51 ~l~~~g~--~~~~~~~l~~l~~g~~~-~~~~~e~~gG--------~~~--~------------------~-----~~~~~   94 (216)
                      .+..+|+  ++|+++|++++.+|+++ +.+++||.+|        +|.  .                  +     ..+.+
T Consensus       119 ~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~~a~r~gdg~vlnG~K~~iT~a~~Ad~~  198 (490)
T 1u8v_A          119 IDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEH  198 (490)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCEEEEECSSEEEEEEEECSCTTCTTCSEE
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceEEEEEECCEEEEEeEEEEeeCCcccCEE
Confidence            4558999  89999999999999976 7899999864        563  1                  0     11333


Q ss_pred             HHHHHHhhCC-------CceeEeeechh-hhH---HHH-Hh----------cCC----HHHhhhhchhc---ccccc--c
Q psy5139          95 IVEEIARVDP-------SVSILVDIQNT-LVN---DLI-IK----------LGT----TEQKEKYLPRL---AQTDV--S  143 (216)
Q Consensus        95 v~e~lar~~~-------~~~~~v~~~~~-~~~---~~~-~~----------~g~----~~~~~~~l~~~---~~~~l--g  143 (216)
                      ++  +++++.       ...|+|+.+.+ +..   .+. .+          +|.    .....++|+++   .++++  |
T Consensus       199 iV--~art~~~~~~~~~~s~flVp~d~pGv~v~~~r~~~~~~~~~~~~d~~lg~~r~~~~~~~v~FddV~VP~e~vl~~g  276 (490)
T 1u8v_A          199 II--MPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQ  276 (490)
T ss_dssp             EE--CCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEEEES
T ss_pred             EE--EEecCCCCCCCCeEEEEEEECCCCCEEEEecccccccccccccccCCccccccCCceEEEEECceEeCHHHccCCC
Confidence            44  565531       13478887653 211   121 11          232    12244788875   46766  6


Q ss_pred             ccccchhhhhhhhccccCCceeeccceeeeec-------CcccCCCcceeeeeeccccceeeeeeccc---ccccccccc
Q psy5139         144 RTSRGYKALEWHAFYGRTDSLPLNDHLSHISS-------GCVGFDGQLKRWMVSCGLSLQILQFQNLS---SDMHMTGLA  213 (216)
Q Consensus       144 ~~~~g~~~~~~~~~~~~~~~~~l~g~k~~va~-------~~~g~~~~~~~~~~~~~fg~~i~~~Q~v~---ad~~~~~~~  213 (216)
                      +++.|+......+...|          ..+++       ..+|.    ++.+++. ||  |++||.||   +||.+.+++
T Consensus       277 ~~~~g~~~~~~~~~~~r----------~~~~a~~~~~~~~~lG~----a~~~~~~-~g--i~~~q~vq~~laem~~~lea  339 (490)
T 1u8v_A          277 EYDFAGMMVERFAGYHR----------QSYGGCKVGVGDVVIGA----AALAADY-NG--AQKASHVKDKLIEMTHLNET  339 (490)
T ss_dssp             CGGGHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH----HHHHHHH-HT--CTTCHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH----HHHHHHh-cC--chhcHHHHHHHHHHHHHHHH
Confidence            77777765444444443          32222       22444    4444432 55  99999999   999999998


Q ss_pred             cCC
Q psy5139         214 SRF  216 (216)
Q Consensus       214 ~r~  216 (216)
                      +|+
T Consensus       340 ar~  342 (490)
T 1u8v_A          340 LYC  342 (490)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            873

>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*

Probab=98.02  E-value=1.9e-06  Score=72.13  Aligned_cols=112  Identities=13%  Similarity=0.064  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhCCceeeec--CCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeec-hhhhHHHHHhcCCHHHhhhhchhc
Q psy5139          61 KEKYLPRLAQTDLMGVEI--PQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQ-NTLVNDLIIKLGTTEQKEKYLPRL  137 (216)
Q Consensus        61 ~~~~l~~l~~g~~~~~~~--~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~-~~~~~~~~~~~g~~~~~~~~l~~~  137 (216)
                      .+++++.+.+.|+.++.+  |+++||.........+.    +..+...  .++.. .......+..+| +++++.|++.+
T Consensus        88 ~~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~~~~~~----~~~~~~~--~~p~~~t~~~~~~L~~~g-~eqk~~~lp~l  160 (541)
T 3djl_A           88 WHLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLH----AQVEAGS--LCPITMTFAATPLLLQML-PAPFQDWTTPL  160 (541)
T ss_dssp             HHHHHHHHHHTTTTTGGGSTTCCTTHHHHHHHHHHHH----HHHCSTT--HHHHHHHHHHHHHHHHHC-CGGGGGGHHHH
T ss_pred             HHHHHHHHHhCCcccCCCCCCCCCCcHHHHHHHHHHH----HHHHHhh--hcHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence            467888899999999988  57777543333222222    2223321  11110 123445667778 89999999987


Q ss_pred             ccccc-------------------cccccchhhhhhhhcccc--CCceeeccceeeeecCcccC
Q psy5139         138 AQTDV-------------------SRTSRGYKALEWHAFYGR--TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       138 ~~~~l-------------------g~~~~g~~~~~~~~~~~~--~~~~~l~g~k~~va~~~~g~  180 (216)
                      .++.+                   .+++.|++.....++..+  +++|+|||+|.|++ +..++
T Consensus       161 ~sge~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad  223 (541)
T 3djl_A          161 LSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSD  223 (541)
T ss_dssp             TCSCCCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSS
T ss_pred             hCCCcccccccccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccC
Confidence            65532                   466777776554445444  46799999999998 55443

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*

Probab=97.65  E-value=1.7e-08  Score=83.30  Aligned_cols=145  Identities=10%  Similarity=0.023  Sum_probs=83.5

Q ss_pred             ChhHHHHHHHHHHhCCce-eeecCCCCCC--------CCcc--------------------HH----HHHHHHHHHHhhC
Q psy5139          57 TTEQKEKYLPRLAQTDLM-GVEIPQEYGG--------PGLS--------------------FM----TDILIVEEIARVD  103 (216)
Q Consensus        57 ~~~~~~~~l~~l~~g~~~-~~~~~e~~gG--------~~~~--------------------~~----~~~~v~e~lar~~  103 (216)
                      .++|+++|++++.+|+++ +++++||.+|        +|..                    ++    .+.+++  +++++
T Consensus       122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~~~~~~~~~~gdg~VlnG~K~~iT~~~Ad~~iV--~art~  199 (481)
T 2yyk_A          122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPYIPVGVVKQTEKGIVVRGARMTATFPLADEVLI--FPSIL  199 (481)
T ss_dssp             GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSCSBCEEEEECSSEEEEEEEEEEEECCCSSEEEE--CCCSC
T ss_pred             HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcccceEEEEEECCEEEEEeEEEEeccccccEEEE--EEecC
Confidence            369999999999999975 7899999876        4531                    01    123334  66664


Q ss_pred             C--C----c-eeEeeechh-hhH--HHHHh---------cCCH---HHhhhhchhc---ccccc--cccccchhhh--hh
Q psy5139         104 P--S----V-SILVDIQNT-LVN--DLIIK---------LGTT---EQKEKYLPRL---AQTDV--SRTSRGYKAL--EW  154 (216)
Q Consensus       104 ~--~----~-~~~v~~~~~-~~~--~~~~~---------~g~~---~~~~~~l~~~---~~~~l--g~~~~g~~~~--~~  154 (216)
                      .  +    . .|+|+.+.+ +..  .....         +|.+   ...+++|+++   .++++  |+++.|+...  ..
T Consensus       200 ~~~~~~~~~s~flVp~dtpGv~v~~r~~~~~~~s~~d~~lg~r~~~~~~~v~FddV~VP~e~vl~~G~~~~g~~~~~~~~  279 (481)
T 2yyk_A          200 LQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATG  279 (481)
T ss_dssp             CCTTCGGGCEEEEEETTCTTEEEEECCCCCCCSCTTTCTTTTTCCCCEEEEEEEEEEEEGGGEEEESCHHHHHHHHHHHT
T ss_pred             CCCCCCCeEEEEEEECCCCCEEEEeccccccCCccccccccccCCCCeEEEEEccEEECHHHccCCCCccHHHHHHHHhh
Confidence            1  1    2 378887653 211  11111         1111   2234778875   56776  6665555433  33


Q ss_pred             hhccccCCceeeccceeeeecCcccCCCcc---eeeeeeccccceeeeeeccc---ccccccccccCC
Q psy5139         155 HAFYGRTDSLPLNDHLSHISSGCVGFDGQL---KRWMVSCGLSLQILQFQNLS---SDMHMTGLASRF  216 (216)
Q Consensus       155 ~~~~~~~~~~~l~g~k~~va~~~~g~~~~~---~~~~~~~~fg~~i~~~Q~v~---ad~~~~~~~~r~  216 (216)
                      .+...|          ...++..++..+.+   ++..++ .||  |++||.||   |||.+.++++|+
T Consensus       280 ~l~~~r----------~~~~~~~~g~a~~~lg~a~~~~~-~~g--i~~~q~vq~~laem~~~leaar~  334 (481)
T 2yyk_A          280 ALNHMA----------HQVVALKTAKTEAFLGVAALMAE-GIG--ADVYGHVQEKIAEIIVYLEAMRA  334 (481)
T ss_dssp             HHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH-HTT--GGGSHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHH----------HHHHHHHHHHHHHHHHHHHHHHH-hcC--hhhhHHHHHHHHHHHHHHHHHHH
Confidence            334444          44444443331000   222222 255  99999999   999999998873

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}

Probab=97.62  E-value=4.8e-08  Score=80.89  Aligned_cols=150  Identities=9%  Similarity=0.016  Sum_probs=85.9

Q ss_pred             cCC--hhHHHHHHHHHHhCCce-eeecCCCCC--------CCCcc-----------------------HHHHHHHHHHHH
Q psy5139          55 LGT--TEQKEKYLPRLAQTDLM-GVEIPQEYG--------GPGLS-----------------------FMTDILIVEEIA  100 (216)
Q Consensus        55 ~g~--~~~~~~~l~~l~~g~~~-~~~~~e~~g--------G~~~~-----------------------~~~~~~v~e~la  100 (216)
                      +++  .+|+++|++.+.+|+++ +++++||.+        |+|..                       ...+.+++  ++
T Consensus       127 ~~~~~~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~~~~~~~~~gdg~VlnG~K~~iT~a~~Ad~~lV--~a  204 (515)
T 3hwc_A          127 EGRNLTQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSPNLRIVEKTDDGIIVNGVKAVGTGIAFGDYMHI--GC  204 (515)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCSBCEEEEECSSEEEEEEEEEEEESGGGCSEEEE--CC
T ss_pred             cCCCHHHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCcceEEEEEECCEEEEEEEEEEECCccccCEEEE--EE
Confidence            454  47889999999999986 789999986        35541                       11133444  56


Q ss_pred             hhCC------CceeEeeechh-hhH-HHHHhcCCH------------HHhhhhchhc---ccccc--cccccchhhhhhh
Q psy5139         101 RVDP------SVSILVDIQNT-LVN-DLIIKLGTT------------EQKEKYLPRL---AQTDV--SRTSRGYKALEWH  155 (216)
Q Consensus       101 r~~~------~~~~~v~~~~~-~~~-~~~~~~g~~------------~~~~~~l~~~---~~~~l--g~~~~g~~~~~~~  155 (216)
                      ++++      -..|+|+.+.+ +.. ......|..            ....++|+++   .++++  |+++.|+..+...
T Consensus       205 ~t~~~~~~~~~s~FlVp~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl~~Ge~g~g~~~~~~~  284 (515)
T 3hwc_A          205 LYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRI  284 (515)
T ss_dssp             CCCTTCCGGGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEEEESCTTGGGTHHHHH
T ss_pred             EecCCCCCCeEEEEEEECCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHccCCCCccHHHHHHHHH
Confidence            6521      12378887653 111 111112210            1234678875   46777  7788887655322


Q ss_pred             hccccCCceeeccceeeeecCcccCCCcceeeeeeccccceeeeeeccc---ccccccccccCC
Q psy5139         156 AFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCGLSLQILQFQNLS---SDMHMTGLASRF  216 (216)
Q Consensus       156 ~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~~fg~~i~~~Q~v~---ad~~~~~~~~r~  216 (216)
                      +...+   +..-..+..++...+|.    ++.+++ .||  |++||+||   |||++.+|++|+
T Consensus       285 ~~~~~---r~~~~~~~~~a~~~lG~----A~~~~e-~~g--I~~fQ~Vq~kLAem~~~lEaaR~  338 (515)
T 3hwc_A          285 FDWVH---YHILIRQVLRAELIVGL----AILITE-HIG--TSKLPTVSARVAKLVAFHLAMQA  338 (515)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHH----HHHHHH-HHT--CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHH----HHHHHH-HcC--CcccHHHHHHHHHHHHHHHHHHH
Confidence            22110   00001123334445555    555444 355  99999999   999999998873

>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*

Probab=97.52  E-value=4.2e-05  Score=65.57  Aligned_cols=113  Identities=19%  Similarity=0.099  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+++++..+.+++++.. +|+++|+   +..+..++.+++   +.++.  +..+.......+..+|+++|++.|++.+.
T Consensus        57 ~~~~~~~~~l~~~g~l~~-~p~e~G~---~~~~~~~v~e~~---~~~~~--~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~  127 (659)
T 1w07_A           57 SRKELFKSTLRKCAHAFK-RIIELRL---NEEEAGRLRHFI---DQPAY--VDLHWGMFVPAIKGQGTEEQQKKWLSLAN  127 (659)
T ss_dssp             CHHHHHHHHHHHHHHHHH-HHHHTTC---CHHHHHHHHHHH---CCCCH--HHHHHHTHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHH-hHHHhCC---CchHHHHHHHHh---ccchh--hhhHHhHHHHHHHHcCCHHHHHHHhhHHh
Confidence            356678888887777653 6666763   334444443333   34333  22332345567788999999999999986


Q ss_pred             ccc------ccccccchhhh--hhhhcccc-CCceeec-----cceeeeec-CcccC
Q psy5139         139 QTD------VSRTSRGYKAL--EWHAFYGR-TDSLPLN-----DHLSHISS-GCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~--~~~~~~~~-~~~~~l~-----g~k~~va~-~~~g~  180 (216)
                      ++.      +.++++|++..  .+++...+ +++|+||     |+|.|+++ +..+.
T Consensus       128 ~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G~K~~is~~a~~Ad  184 (659)
T 1w07_A          128 KMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVST  184 (659)
T ss_dssp             TTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECCTTTTTTCS
T ss_pred             cCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCeEEEeecCCCCCCC
Confidence            653      24677777653  33333333 5789999     99999998 55443

>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1

Probab=96.51  E-value=0.00075  Score=55.80  Aligned_cols=60  Identities=15%  Similarity=0.225  Sum_probs=41.5

Q ss_pred             HHHhcCC--HHHhhhhchhccccc------ccccccc--------hhh-hhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         120 LIIKLGT--TEQKEKYLPRLAQTD------VSRTSRG--------YKA-LEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       120 ~~~~~g~--~~~~~~~l~~~~~~~------lg~~~~g--------~~~-~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ....+|+  ++|++.|++.+.++.      +.+|..|        ++. .... ...+ +++|+|||+|.|++++..++
T Consensus       119 ~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad  196 (490)
T 1u8v_A          119 IDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSH  196 (490)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCS
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccC
Confidence            3457899  899999999886543      2455432        342 2221 3334 88999999999999988754

>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*

Probab=95.76  E-value=0.0069  Score=51.96  Aligned_cols=64  Identities=19%  Similarity=0.191  Sum_probs=46.0

Q ss_pred             hhHHHHHhcCCHHHhhhhchhccccc------ccccccchhhh--hhhhcccc-CCceeec-----cceeeeec-Cccc
Q psy5139         116 LVNDLIIKLGTTEQKEKYLPRLAQTD------VSRTSRGYKAL--EWHAFYGR-TDSLPLN-----DHLSHISS-GCVG  179 (216)
Q Consensus       116 ~~~~~~~~~g~~~~~~~~l~~~~~~~------lg~~~~g~~~~--~~~~~~~~-~~~~~l~-----g~k~~va~-~~~g  179 (216)
                      .....+..+|+++|++.|++.+.++.      +.++++|++..  .+++...+ +++|+||     |+|.|+++ +..+
T Consensus       106 l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~~~G~K~wis~~a~~A  184 (661)
T 2ddh_A          106 MFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTS  184 (661)
T ss_dssp             THHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTTSEECCTTTTTTC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCCCCeEEEecCCCcccC
Confidence            55677888999999999999886653      24667787653  34444433 6789999     99999998 5443

>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*

Probab=95.36  E-value=0.0071  Score=49.88  Aligned_cols=54  Identities=7%  Similarity=0.023  Sum_probs=35.3

Q ss_pred             CHHHhhhhchhccccc------ccccccc--------hhh-hhhhhccccCCceeeccceeeeecCcccC
Q psy5139         126 TTEQKEKYLPRLAQTD------VSRTSRG--------YKA-LEWHAFYGRTDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       126 ~~~~~~~~l~~~~~~~------lg~~~~g--------~~~-~~~~~~~~~~~~~~l~g~k~~va~~~~g~  180 (216)
                      ..+|++.|++.+.++.      +.+++.|        ++. +..+.....+|+|+|||+|.|+++ ..++
T Consensus       122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad  190 (481)
T 2yyk_A          122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPYIPVGVVKQTEKGIVVRGARMTATF-PLAD  190 (481)
T ss_dssp             GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSCSBCEEEEECSSEEEEEEEEEEEEC-CCSS
T ss_pred             HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcccceEEEEEECCEEEEEeEEEEecc-cccc
Confidence            4588999999886543      3455544        333 122222123889999999999999 7654

>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}

Probab=94.82  E-value=0.014  Score=48.42  Aligned_cols=52  Identities=12%  Similarity=0.088  Sum_probs=35.0

Q ss_pred             HHhhhhchhccccc------cccccc--------chhhhhhhhccccCCceeeccceeeeecCcccC
Q psy5139         128 EQKEKYLPRLAQTD------VSRTSR--------GYKALEWHAFYGRTDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       128 ~~~~~~l~~~~~~~------lg~~~~--------g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++++.|++.+.++.      +.+++.        |++. .......++++|+|||+|.|++++..++
T Consensus       133 eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~~~~gdg~VlnG~K~~iT~a~~Ad  198 (515)
T 3hwc_A          133 QNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIVEKTDDGIIVNGVKAVGTGIAFGD  198 (515)
T ss_dssp             HHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEEEECSSEEEEEEEEEEEESGGGCS
T ss_pred             HHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEEEEECCEEEEEEEEEEECCccccC
Confidence            77788999886653      234443        3444 2222222388999999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1ivha2	236	e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM	1e-04
d1ivha2	236	e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM	1e-04

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 24/83 (28%), Positives = 46/83 (55%)

Query: 56  GTTEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNT 115
              +   ++  +L    ++G+  P +YGG GL ++  +L++EEI+R   +V +     + 
Sbjct: 38  NEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSN 97

Query: 116 LVNDLIIKLGTTEQKEKYLPRLA 138
           L  + +++ G   QKEKYLP+L 
Sbjct: 98  LCINQLVRNGNEAQKEKYLPKLI 120

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 19/60 (31%), Positives = 35/60 (58%)

Query: 16  PGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMG 75
            GL ++  +L++EEI+R   +V +     + L  + +++ G   QKEKYLP+L   + +G
Sbjct: 67  SGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIG 126

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d2c12a2	259	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	99.66
d1ivha2	236	Isovaleryl-coa dehydrogenase, NM domains {Human (H	99.66
d2d29a2	233	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	99.62
d3mdea2	231	Medium chain acyl-CoA dehydrogenase, NM domains {P	99.59
d1jqia2	231	Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus	99.58
d1ukwa2	227	Medium chain acyl-CoA dehydrogenase, NM domains {T	99.57
d1r2ja2	210	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	99.51
d1siqa2	236	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	99.49
d1r2ja2	210	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	99.49
d1rx0a2	231	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	99.47
d1buca2	232	Butyryl-CoA dehydrogenase, NM domains {Megasphaera	99.19
d2c12a2	259	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	98.4
d2d29a2	233	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	98.27
d1ivha2	236	Isovaleryl-coa dehydrogenase, NM domains {Human (H	98.23
d1jqia2	231	Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus	98.06
d1ukwa2	227	Medium chain acyl-CoA dehydrogenase, NM domains {T	97.98
d2ddha3	267	Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {	97.97
d1w07a3	271	Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale	97.9
d3mdea2	231	Medium chain acyl-CoA dehydrogenase, NM domains {P	97.89
d1ivha1	151	Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom	97.63
d2d29a1	153	Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI	97.57
d1siqa1	154	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	97.55
d2ddha3	267	Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {	97.55
d1jqia1	153	Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n	97.53
d1rx0a2	231	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	97.49
d3mdea1	154	Medium chain acyl-CoA dehydrogenase, C-domain {Pig	97.37
d1siqa2	236	Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie	97.37
d1w07a3	271	Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale	97.28
d2c12a1	170	Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55	97.19
d1ukwa1	152	Medium chain acyl-CoA dehydrogenase, C-domain {The	97.18
d1rx0a1	153	Isobutyryl-CoA dehydrogenase {Human (Homo sapiens)	97.05
d1buca1	151	Butyryl-CoA dehydrogenase, C-domain {Megasphaera e	97.03
d1r2ja1	153	Protein FkbI {Streptomyces hygroscopicus [TaxId: 1	96.86
d1u8va2	275	4-hydroxybutyryl-CoA dehydratase AbfD, NM domains	96.53
d1buca2	232	Butyryl-CoA dehydrogenase, NM domains {Megasphaera	95.59
d1w07a1	189	Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale	87.49

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=99.66  E-value=2.7e-16  Score=118.26  Aligned_cols=85  Identities=21%  Similarity=0.308  Sum_probs=74.4

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHh--CCc-eeeec
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQ--TDL-MGVEI   78 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~--g~~-~~~~~   78 (216)
                      .||+++.+|++|||.|++..+.+++.||+++.+.+++..+..+. +....+..+++++|+++|++++.+  +.+ .++++
T Consensus        54 ~G~~~~~vPee~GG~g~~~~~~~~~~eel~~~~~~~~~~~~~~~-~~~~~i~~~g~~eq~~~~l~~~~~~~g~~~~a~a~  132 (259)
T d2c12a2          54 HGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMH  132 (259)
T ss_dssp             TTTTGGGSBGGGTCCBCCHHHHHHHHHHHHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEEC
T ss_pred             cCCCCcCCChHHhhccchhhhhhhhhhhcccccccccccccccc-chHHHHHHhhhccccccccccccccceeeeeeccc
Confidence            59999999999999999999999999999999999877665543 677778899999999999999986  455 47899


Q ss_pred             CCCCCCCCc
Q psy5139          79 PQEYGGPGL   87 (216)
Q Consensus        79 ~e~~gG~~~   87 (216)
                      +||.+|+|.
T Consensus       133 TEp~~Gsd~  141 (259)
T d2c12a2         133 SEPNGTANW  141 (259)
T ss_dssp             CCTTCSTTT
T ss_pred             cCCcccccc
Confidence            999999874

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-16  Score=118.47  Aligned_cols=85  Identities=29%  Similarity=0.644  Sum_probs=76.4

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +||+++.+|+++||.|++..+.+++.|++++.+.+++..+..+.......|.++++++|++++++++.+|+.+ +++++|
T Consensus        53 ~G~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gs~~qk~~~l~~~~~G~~~~~~a~tE  132 (236)
T d1ivha2          53 LGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSE  132 (236)
T ss_dssp             HTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCB
T ss_pred             hhhccccccccccccCcccchhhhhhhhhhhhhhccceeeeehhhhhHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecC
Confidence            4899999999999999999999999999999998887777666656777899999999999999999999975 789999


Q ss_pred             CCCCCC
Q psy5139          81 EYGGPG   86 (216)
Q Consensus        81 ~~gG~~   86 (216)
                      |.+|+|
T Consensus       133 p~~gsd  138 (236)
T d1ivha2         133 PNAGSD  138 (236)
T ss_dssp             TTBSSS
T ss_pred             CCCCCc
Confidence            988876

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=1.5e-15  Score=112.48  Aligned_cols=85  Identities=31%  Similarity=0.491  Sum_probs=76.9

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +||+++.+|++|||.+++..+...+.|++++.+.+.+..+..+.......+.++++++|++++++++.+|..+ +++++|
T Consensus        49 ~Gl~~~~~P~~~GG~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tE  128 (233)
T d2d29a2          49 FGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTE  128 (233)
T ss_dssp             TTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCB
T ss_pred             hccccccccccccccccchhhhccccccccccccccccccccccccchHHHHHhChHHHHHhhCccccCCCEEEEEEecC
Confidence            6999999999999999999999999999999998888777766666777799999999999999999999986 689999


Q ss_pred             CCCCCC
Q psy5139          81 EYGGPG   86 (216)
Q Consensus        81 ~~gG~~   86 (216)
                      +.+|+|
T Consensus       129 p~~gsd  134 (233)
T d2d29a2         129 PGSGSD  134 (233)
T ss_dssp             TTBSSS
T ss_pred             CCCCCc
Confidence            988876

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.59  E-value=2.8e-15  Score=110.75  Aligned_cols=85  Identities=28%  Similarity=0.452  Sum_probs=74.8

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +||+++.+|++|||.|.+....+++.|++++.+.+.+.....+. .....|..+++++|++++++++.+|..+ +++++|
T Consensus        49 ~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tE  127 (231)
T d3mdea2          49 LGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTE  127 (231)
T ss_dssp             HTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHTTSCCEEEEECCB
T ss_pred             hhhccccccccccCccccccccccchhhhccccccccccccccc-ccchhhhhcCcccccccccchhcCCceEEEEEecC
Confidence            48999999999999999999999999999999888766555433 5666789999999999999999999986 789999


Q ss_pred             CCCCCCc
Q psy5139          81 EYGGPGL   87 (216)
Q Consensus        81 ~~gG~~~   87 (216)
                      |.+|+|+
T Consensus       128 p~~Gsd~  134 (231)
T d3mdea2         128 PGAGSDV  134 (231)
T ss_dssp             TTBSSCG
T ss_pred             CCCCCCc
Confidence            9998874

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=1.5e-15  Score=112.27  Aligned_cols=85  Identities=25%  Similarity=0.520  Sum_probs=75.4

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +||+++.+|++|||.|++..+..++.|++++.+.+.+.....+.......+..+++++|+++|++++.+|+.+ +++++|
T Consensus        50 ~Gl~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~~~~~~a~tE  129 (231)
T d1jqia2          50 LGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSE  129 (231)
T ss_dssp             HTTTSSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCB
T ss_pred             hCCcccccccccCCCchhHHHHHHHHHHHHhhccccccceeeeccchhhhhhhcCCHHHHHHHhCcccCCCccccceecc
Confidence            4999999999999999999999999999999988877666555656777899999999999999999999875 789999


Q ss_pred             CCCCCC
Q psy5139          81 EYGGPG   86 (216)
Q Consensus        81 ~~gG~~   86 (216)
                      |.+|++
T Consensus       130 p~~gsd  135 (231)
T d1jqia2         130 PGNGSD  135 (231)
T ss_dssp             TTBSSS
T ss_pred             CCCCcc
Confidence            988875

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=2.5e-15  Score=110.81  Aligned_cols=85  Identities=27%  Similarity=0.441  Sum_probs=73.4

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +||+++.+|++|||.|.+..+.+.+.|++++.+.+.......+ ..+...+..+++++|+++|++.+.+++.+ +++++|
T Consensus        48 ~G~~~~~~P~~~GG~g~~~~~~~~v~e~~~~~~~~~~~~~~~~-~~~~~~i~~~g~~~qk~~~l~~~~~g~~~~~~a~tE  126 (227)
T d1ukwa2          48 VGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSE  126 (227)
T ss_dssp             TTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCB
T ss_pred             hhhhhhccccccCcccccccccccchhhhcccccccccccccc-ccchhhhhccCCHHHHHHhccccccccccccccccC
Confidence            6999999999999999999999999999999988776554433 35667788999999999999999999986 689999


Q ss_pred             CCCCCCc
Q psy5139          81 EYGGPGL   87 (216)
Q Consensus        81 ~~gG~~~   87 (216)
                      +.+|++.
T Consensus       127 ~~~gsd~  133 (227)
T d1ukwa2         127 PGNGSDA  133 (227)
T ss_dssp             TTBSSCG
T ss_pred             CCcCcCC
Confidence            9888763

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=99.51  E-value=1.7e-14  Score=104.96  Aligned_cols=85  Identities=22%  Similarity=0.334  Sum_probs=75.4

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCceeeecCCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLMGVEIPQE   81 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~~~~~~e~   81 (216)
                      +||+++.+|++|||.|++..+.+.+.|++++.+.+++.++..|. .+...+..+++++||++|++.+.++...+++++|+
T Consensus        34 ~Gl~~~~iP~e~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~-~~~~~l~~~gs~~qk~~~l~~~~~g~~~~~~~te~  112 (210)
T d1r2ja2          34 DGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG-MAAWTVQRLGDAGQRATFLKELTSGKLAAVGFSER  112 (210)
T ss_dssp             TTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHTTCC-CEEEECCBT
T ss_pred             cCCCcccCChhHccccccHHHHhhhhcccccccccccccccccc-ccchhhhhccccccccccccccccccccccccccc
Confidence            59999999999999999999999999999999988877666554 66778999999999999999999998888999999


Q ss_pred             CCCCCc
Q psy5139          82 YGGPGL   87 (216)
Q Consensus        82 ~gG~~~   87 (216)
                      ..|++.
T Consensus       113 ~~gs~~  118 (210)
T d1r2ja2         113 QAGSDL  118 (210)
T ss_dssp             TBSSCG
T ss_pred             cccccc
Confidence            888764

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-13  Score=101.70  Aligned_cols=85  Identities=32%  Similarity=0.510  Sum_probs=73.9

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +||+++.+| ++||.|.+.....++.|++++.+.+.+.....+..++...+.++++++||++|++++++|+.+ +++++|
T Consensus        57 ~g~~~~~i~-~~gg~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~~~a~tE  135 (236)
T d1siqa2          57 LGVLGPTIK-GYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTE  135 (236)
T ss_dssp             TTCSSTTCE-ETTEECCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCB
T ss_pred             hhccccccc-ccccCCcCHHHHHHHHHhhhccccccccccccccccchhhhhhhcCHHHHHHhcCccCCCCEEecccCcC
Confidence            588998885 689999999999999999999988877666656556778899999999999999999999876 689999


Q ss_pred             CCCCCCc
Q psy5139          81 EYGGPGL   87 (216)
Q Consensus        81 ~~gG~~~   87 (216)
                      |.+|++.
T Consensus       136 p~~gsd~  142 (236)
T d1siqa2         136 PNSGSDP  142 (236)
T ss_dssp             TTBSSCG
T ss_pred             CCccccc
Confidence            9888763

>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=99.49  E-value=3.4e-15  Score=108.74  Aligned_cols=121  Identities=18%  Similarity=0.226  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ++++++++++.+.|++++.+||++||.+.+..+...++|++++.+.++++++..+ ......+..+|+++|++.|++.+.
T Consensus        22 ~~p~~~~~~l~~~Gl~~~~iP~e~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~-~~~~~~l~~~gs~~qk~~~l~~~~  100 (210)
T d1r2ja2          22 ELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQ-GMAAWTVQRLGDAGQRATFLKELT  100 (210)
T ss_dssp             CCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHcCCCcccCChhHccccccHHHHhhhhccccccccccccccccc-cccchhhhhccccccccccccccc
Confidence            4677899999999999999999999999999999999999999987765433333 345567889999999999999887


Q ss_pred             cccc-----cccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTDV-----SRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~l-----g~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.+     .+++.|.+......+..+ +++|+|||+|.|++++..++
T Consensus       101 ~g~~~~~~~te~~~gs~~~~~~t~a~~~~~g~~l~G~K~~vs~a~~Ad  148 (210)
T d1r2ja2         101 SGKLAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYAD  148 (210)
T ss_dssp             CC-CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCS
T ss_pred             ccccccccccccccccccccccceEEEeccceEEEEeecccccccccc
Confidence            6643     455667666555555555 88999999999999988765

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.8e-13  Score=100.99  Aligned_cols=84  Identities=26%  Similarity=0.390  Sum_probs=73.8

Q ss_pred             CccccccCCCCCCCCCCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCC
Q psy5139           2 TTLLGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQ   80 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e   80 (216)
                      +||+++.+|++|||.+.+..+.+.+.|++++.+.+.+.++..+. .....+..++++++++++++++.+++.. +++++|
T Consensus        53 ~Gl~~~~vp~~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~~-~~~~~l~~~~~~e~~~~~l~~~~~g~~~~~~~~te  131 (231)
T d1rx0a2          53 LGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTE  131 (231)
T ss_dssp             TTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCB
T ss_pred             cCCcccccchhhccccccchhhhhhHHHHhhhcccccccccccc-chhhhhhhhcchhhhhhhcchhhcccccccccccc
Confidence            59999999999999999999999999999999988877666553 6667789999999999999999999876 678888


Q ss_pred             CCCCCC
Q psy5139          81 EYGGPG   86 (216)
Q Consensus        81 ~~gG~~   86 (216)
                      +..|++
T Consensus       132 ~~~gsd  137 (231)
T d1rx0a2         132 PGSGSD  137 (231)
T ss_dssp             TTBSSS
T ss_pred             cccCCC
Confidence            877765

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

Probab=99.19  E-value=5e-11  Score=87.58  Aligned_cols=85  Identities=29%  Similarity=0.482  Sum_probs=66.4

Q ss_pred             CccccccCCCCCCCC---CCCHHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eee
Q psy5139           2 TTLLGVEIPQEYGGP---GLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVE   77 (216)
Q Consensus         2 ~G~~~~~~p~~~GG~---g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~   77 (216)
                      +||+++.+|++|||.   +........+.|+.+...............+....+..+++++|++++++++.+|+.+ +++
T Consensus        48 ~G~~~~~vP~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~~~~G~~~~~~a  127 (232)
T d1buca2          48 LGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFG  127 (232)
T ss_dssp             TSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEE
T ss_pred             hhcccccccccccccccccccchheehhhhhhhhccccccccccchhhhhhhHHHHhhhhhhhhhhhhhhhCCCEEeccc
Confidence            699999999999965   5677777778788776655543333333345666789999999999999999999986 689


Q ss_pred             cCCCCCCCC
Q psy5139          78 IPQEYGGPG   86 (216)
Q Consensus        78 ~~e~~gG~~   86 (216)
                      ++|+.+|++
T Consensus       128 ~te~~~gs~  136 (232)
T d1buca2         128 LTEPNAGTD  136 (232)
T ss_dssp             CCBTTBSSC
T ss_pred             ccccccccc
Confidence            999888875

>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=98.40  E-value=1.2e-07  Score=70.24  Aligned_cols=118  Identities=17%  Similarity=0.206  Sum_probs=92.5

Q ss_pred             HHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccc-
Q psy5139          61 KEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQ-  139 (216)
Q Consensus        61 ~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~-  139 (216)
                      ++++++++.+.|++++.+||++||.+.+..+...+.|++++.+.++++.+..+ ......+..+++++|++.|++++.+ 
T Consensus        44 ~~e~~~~~~~~G~~~~~vPee~GG~g~~~~~~~~~~eel~~~~~~~~~~~~~~-~~~~~~i~~~g~~eq~~~~l~~~~~~  122 (259)
T d2c12a2          44 TRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATSITIVAT-ALGLMPVILCDSPSLQEKFLKPFISG  122 (259)
T ss_dssp             THHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHHHHHTTCCTTHHHHHHH-HHHHHHHHHSSCHHHHHHHTGGGGSS
T ss_pred             hHHHHHHHHHcCCCCcCCChHHhhccchhhhhhhhhhhccccccccccccccc-cchHHHHHHhhhcccccccccccccc
Confidence            45789999999999999999999999999999999999999988876544332 3555677789999999999998754 


Q ss_pred             -cc------ccccccchhhhh-----hhhcccc-CCceeeccceeeeecCccc
Q psy5139         140 -TD------VSRTSRGYKALE-----WHAFYGR-TDSLPLNDHLSHISSGCVG  179 (216)
Q Consensus       140 -~~------lg~~~~g~~~~~-----~~~~~~~-~~~~~l~g~k~~va~~~~g  179 (216)
                       +.      +.+++.|++...     ..++..+ +++|+|||+|.|++++...
T Consensus       123 ~g~~~~a~a~TEp~~Gsd~~~~~~~~~~t~a~~~g~~~vlnG~K~~vt~a~~~  175 (259)
T d2c12a2         123 EGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGW  175 (259)
T ss_dssp             CSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTEEEEEEEEECCTTTTTT
T ss_pred             ceeeeeeccccCCccccccccccccccccccccccchhccceeeeeecCCccc
Confidence             32      346677776532     1233444 8899999999999987553

>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.27  E-value=1.2e-07  Score=69.06  Aligned_cols=122  Identities=28%  Similarity=0.403  Sum_probs=99.0

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..++++++++.+.|++++.+|+++||.+.+..+...+.+++++.+.+..+.+..+.......+..+|+++|++.|++.+.
T Consensus        37 ~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~  116 (233)
T d2d29a2          37 AFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLA  116 (233)
T ss_dssp             CCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhccccccccccccccccchhhhccccccccccccccccccccccccchHHHHHhChHHHHHhhCcccc
Confidence            36778999999999999999999999999999999999999998877655444443445566788999999999999986


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++.....++..+ +++|+|||+|.|++++..++
T Consensus       117 ~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vs~~~~a~  165 (233)
T d2d29a2         117 SGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAG  165 (233)
T ss_dssp             TSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCS
T ss_pred             CCCEEEEEEecCCCCCCcccceeEEEEEECCEEEEecceeccccccccc
Confidence            653      3566777777655555555 88999999999999987755

>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.4e-07  Score=67.63  Aligned_cols=121  Identities=25%  Similarity=0.472  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhccc
Q psy5139          60 QKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQ  139 (216)
Q Consensus        60 ~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~~  139 (216)
                      ..+++++++.+.|++++.+||++||.+.+..+...+.|++++.+.++++.+..+.......+..+|++++++.|++++.+
T Consensus        42 ~~~e~~~~l~~~G~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gs~~qk~~~l~~~~~  121 (236)
T d1ivha2          42 NLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLIS  121 (236)
T ss_dssp             THHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhhhccccccccccccCcccchhhhhhhhhhhhhhccceeeeehhhhhHHHHHHhCCHHHHHHHHHHHhC
Confidence            34578999999999999999999999999999999999999988776544333333456677889999999999999876


Q ss_pred             cc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         140 TD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       140 ~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      +.      +.+++.|++.....+++.+ +++|+|||+|.|++++..+.
T Consensus       122 G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~~~a~  169 (236)
T d1ivha2         122 GEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDAD  169 (236)
T ss_dssp             TSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETGGGCS
T ss_pred             CCeEEEEEecCCCCCCccccCeEEEEEECCEEEEEEEEEEEeCCcccc
Confidence            53      2456777776555555555 88999999999999887765

>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.06  E-value=5e-07  Score=65.62  Aligned_cols=122  Identities=22%  Similarity=0.379  Sum_probs=98.1

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..+.+.++++.+.|++++.+|+++||.+.+..+...+++++++.+....+....+.......+..+|++++++.|++++.
T Consensus        38 ~~p~e~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~  117 (231)
T d1jqia2          38 LFPTSQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFT  117 (231)
T ss_dssp             CCCHHHHHHHHHHTTTSSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGS
T ss_pred             CCCHHHHHHHHHhCCcccccccccCCCchhHHHHHHHHHHHHhhccccccceeeeccchhhhhhhcCCHHHHHHHhCccc
Confidence            46678999999999999999999999999999999999999988776544333333355677888999999999999987


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++.....++..+ +++|+|||+|.|++++..+.
T Consensus       118 ~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~lnG~K~~vt~~~~a~  166 (231)
T d1jqia2         118 NGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEAS  166 (231)
T ss_dssp             SSSCCEEEECCBTTBSSSTTCCCCEEEECSSEEEEEEEEEEEETTTTCS
T ss_pred             CCCccccceeccCCCCccCcccceEEEEECCEEEEeeeeeeEeeccccc
Confidence            663      3466778777655555555 88999999999999987755

>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.98  E-value=1e-06  Score=63.65  Aligned_cols=121  Identities=27%  Similarity=0.351  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ++++++++++.+.|++++.+|+++||.+.+......+.|++++.+....++...+ ......+..+++++|++.|++.+.
T Consensus        36 ~~p~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~e~~~~~~~~~~~~~~~~-~~~~~~i~~~g~~~qk~~~l~~~~  114 (227)
T d1ukwa2          36 EVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTIPMAS-DLGITPVLLAGTEEQKERFLRPLT  114 (227)
T ss_dssp             CCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHGGGT
T ss_pred             CCCHHHHHHHHhhhhhhhccccccCcccccccccccchhhhcccccccccccccc-ccchhhhhccCCHHHHHHhccccc
Confidence            4667899999999999999999999999999999999999998876544322221 234566778999999999999987


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|.+.....++..+ +++|+|||+|.|++++..++
T Consensus       115 ~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~~~~Ad  163 (227)
T d1ukwa2         115 EKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAE  163 (227)
T ss_dssp             SSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred             cccccccccccCCCcCcCCcCceEEEEEECCEEEEEeEEeccCccccch
Confidence            653      3566777776555555555 88999999999999998765

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.97  E-value=8.8e-06  Score=60.13  Aligned_cols=66  Identities=11%  Similarity=0.108  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHccCCChhHHHHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCCCCCCCCcc
Q psy5139          20 FMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQEYGGPGLS   88 (216)
Q Consensus        20 ~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e~~gG~~~~   88 (216)
                      +.....+.++.. .+...+.  ..|..++.+.|..+|+++|+++|++++.+|... +++++|+.+|+|+.
T Consensus        82 ~~~~~~~~~~~~-~~~~~~~--~v~~~l~~~~i~~~Gt~eqk~~~l~~~~~g~~~~~~a~tEp~~Gsd~~  148 (267)
T d2ddha3          82 PEEIMWFKNSVH-RGHPEPL--DLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLR  148 (267)
T ss_dssp             HHHHHHHHHHHH-TTCCCTT--HHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGG
T ss_pred             HHHHHHHHhhhc-cCCCcee--hhhhhhhhhHHHhhCCHHHHHHHHHHHhcCCeeeeehhcccCcccccc
Confidence            434444444444 3344333  335557778899999999999999999999986 78999999999864

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.90  E-value=1.8e-05  Score=58.51  Aligned_cols=48  Identities=21%  Similarity=0.255  Sum_probs=42.3

Q ss_pred             HHHHHhhHHHHHHhcCChhHHHHHHHHHHhCCce-eeecCCCCCCCCcc
Q psy5139          41 VDIQNTLVNDLIIKLGTTEQKEKYLPRLAQTDLM-GVEIPQEYGGPGLS   88 (216)
Q Consensus        41 ~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~g~~~-~~~~~e~~gG~~~~   88 (216)
                      ++.|..++.+.|..+|+++|+++|+|++.+|+.+ +++++|+.+|+|+.
T Consensus        98 ~~vh~~~~~~~i~~~Gt~eQk~~~Lp~l~~G~~~~~~a~TEp~~GSd~~  146 (271)
T d1w07a3          98 VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQ  146 (271)
T ss_dssp             HHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGG
T ss_pred             HHHHHHhhHHHHHhhCCHHHHHHhhHHHhCCCeEEEecccCCccccCcc
Confidence            4456678888999999999999999999999986 68999999999864

>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Medium chain acyl-CoA dehydrogenase, NM domains
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.89  E-value=1.3e-06  Score=63.21  Aligned_cols=121  Identities=26%  Similarity=0.345  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      +.+.++++++.+.|++++.+|+++||.+.+......+.|++++.+....+....+ ......+..+++++|++.|++.+.
T Consensus        37 ~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~-~~~~~~l~~~g~~~qk~~~l~~l~  115 (231)
T d3mdea2          37 EYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGCTGVQTAIEAN-TLGQVPLIIGGNYQQQKKYLGRMT  115 (231)
T ss_dssp             CCCHHHHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHhhhccccccccccCccccccccccchhhhcccccccccccccc-cccchhhhhcCcccccccccchhc
Confidence            4667889999999999999999999999999999999999999877655433322 344556778899999999999987


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      ++.      +.+++.|++.....++..+ +++|+|||+|.|++++..+.
T Consensus       116 ~g~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~K~~vt~~~~a~  164 (231)
T d3mdea2         116 EEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKAN  164 (231)
T ss_dssp             TSCCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred             CCceEEEEEecCCCCCCCccCCEEEEEEECCEEEEEEEEEEeCCchhcc
Confidence            653      3567778777655555555 88999999999999987654

>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isovaleryl-CoA dehydrogenase, C-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=7.8e-08  Score=65.35  Aligned_cols=55  Identities=22%  Similarity=0.240  Sum_probs=47.5

Q ss_pred             cchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeecc---------ccceeeeeeccc---cccccccccc
Q psy5139         147 RGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCG---------LSLQILQFQNLS---SDMHMTGLAS  214 (216)
Q Consensus       147 ~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~~---------fg~~i~~~Q~v~---ad~~~~~~~~  214 (216)
                      .||+.+...++.+|          ..+++.++|.    ++.+++.+         ||+||.+||.||   +||.++++++
T Consensus         1 kG~~~~~~~l~~~R----------~~~aa~~~G~----~~~al~~a~~~a~~r~~~g~pl~~~~~vq~~la~~~~~~~a~   66 (151)
T d1ivha1           1 KGVYVLMSGLDLER----------LVLAGGPLGL----MQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMAC   66 (151)
T ss_dssp             CHHHHHHHHHHHHH----------HHHTHHHHHH----HHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHHHHHHH
Confidence            47888888888888          9999999999    66666543         999999999999   9999999887


Q ss_pred             C
Q psy5139         215 R  215 (216)
Q Consensus       215 r  215 (216)
                      |
T Consensus        67 ~   67 (151)
T d1ivha1          67 R   67 (151)
T ss_dssp             H
T ss_pred             H
Confidence            6

>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Acyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.57  E-value=1e-07  Score=64.81  Aligned_cols=56  Identities=20%  Similarity=0.240  Sum_probs=48.1

Q ss_pred             ccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccceeeeeeccc---ccccccccc
Q psy5139         146 SRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQILQFQNLS---SDMHMTGLA  213 (216)
Q Consensus       146 ~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~i~~~Q~v~---ad~~~~~~~  213 (216)
                      |.||+.+...++.+|          ..+++..+|.    ++.+++.         +||+||.+||.||   +||.+++++
T Consensus         1 G~G~~~~~~~l~~~R----------~~~aa~~~G~----a~~~~~~a~~y~~~R~~~g~~l~~~~~v~~~la~~~~~~~~   66 (153)
T d2d29a1           1 GKGFYDVLRVLDGGR----------IGIAAMAVGL----GQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEA   66 (153)
T ss_dssp             TBHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHhhccccccCCHHHhcchhhhhhHHHHHHHH
Confidence            568888888888888          9999999998    6666644         3999999999999   999999988


Q ss_pred             cC
Q psy5139         214 SR  215 (216)
Q Consensus       214 ~r  215 (216)
                      +|
T Consensus        67 ~~   68 (153)
T d2d29a1          67 AR   68 (153)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=7.8e-08  Score=65.61  Aligned_cols=46  Identities=17%  Similarity=0.208  Sum_probs=38.7

Q ss_pred             eccceeeeecCcccCCCcceeeeeecc---------ccceeeeeeccc---ccccccccccC
Q psy5139         166 LNDHLSHISSGCVGFDGQLKRWMVSCG---------LSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       166 l~g~k~~va~~~~g~~~~~~~~~~~~~---------fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      ||..|+.+++.++|.    ++++++.+         ||+||.+||.||   +||+++++++|
T Consensus         8 Ln~~R~~iaa~~lG~----a~~~l~~a~~ya~~R~~fG~pl~~~q~v~~~la~~~~~~~~~r   65 (154)
T d1siqa1           8 LNNARYGIAWGVLGA----SEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGL   65 (154)
T ss_dssp             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            444559999999999    77776543         999999999999   99999998876

>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.55  E-value=7.9e-06  Score=60.39  Aligned_cols=61  Identities=18%  Similarity=0.171  Sum_probs=44.1

Q ss_pred             hhhHHHHHhcCCHHHhhhhchhccccc------ccccccchhhh--hhhhcccc-CCceeecc-----ceeeeec
Q psy5139         115 TLVNDLIIKLGTTEQKEKYLPRLAQTD------VSRTSRGYKAL--EWHAFYGR-TDSLPLND-----HLSHISS  175 (216)
Q Consensus       115 ~~~~~~~~~~g~~~~~~~~l~~~~~~~------lg~~~~g~~~~--~~~~~~~~-~~~~~l~g-----~k~~va~  175 (216)
                      .+....+..+|+++|++.|++.+.++.      +.++++|++..  .+.+.+.. ++.|+|||     +|.|+++
T Consensus       105 ~l~~~~i~~~Gt~eqk~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~T~A~~~~~~~~~vlnG~k~~~~K~wit~  179 (267)
T d2ddha3         105 GMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGG  179 (267)
T ss_dssp             HTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTTSEECCTT
T ss_pred             hhhhhHHHhhCCHHHHHHHHHHHhcCCeeeeehhcccCccccccccccceeecccCceeecCccccceeeecCCC
Confidence            455667889999999999999987653      45777887764  44444333 56799999     6888876

>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.53  E-value=1.2e-07  Score=64.53  Aligned_cols=54  Identities=24%  Similarity=0.400  Sum_probs=46.1

Q ss_pred             chhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccceeeeeeccc---ccccccccccC
Q psy5139         148 GYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       148 g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      ||+.+...++.+|          ..+++..+|.    ++.+++.         +||+||.+||.||   +||++.++++|
T Consensus         2 G~~~~~~~L~~~R----------~~~aa~~~G~----~~~al~~a~~ya~~r~~fG~pl~~~~~v~~~la~~~~~~~~~r   67 (153)
T d1jqia1           2 GFKIAMQTLDMGR----------IGIASQALGI----AQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMALALESAR   67 (153)
T ss_dssp             HHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHhccccCCCcccccchhhhhhHHHHHHHHHH
Confidence            6777788888888          9999999998    6666644         4999999999999   99999999876

>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=1.2e-05  Score=58.02  Aligned_cols=121  Identities=24%  Similarity=0.291  Sum_probs=95.9

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhcc
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRLA  138 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~~  138 (216)
                      ..++++++++.+.|++++.+|+++||.+.+..+...+.+++++.+.+..++...+ ......+..+++.++++.+++...
T Consensus        41 ~~p~~~~~~l~~~Gl~~~~vp~~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~-~~~~~~l~~~~~~e~~~~~l~~~~  119 (231)
T d1rx0a2          41 LFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLC  119 (231)
T ss_dssp             CCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCcccccchhhccccccchhhhhhHHHHhhhccccccccccc-cchhhhhhhhcchhhhhhhcchhh
Confidence            4667899999999999999999999999999999999999998877655433332 244566788899999999998875


Q ss_pred             ccc------ccccccchhhhhhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         139 QTD------VSRTSRGYKALEWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       139 ~~~------lg~~~~g~~~~~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      .+.      +.+++.|++.....++..+ +++|+|||+|.|++++..++
T Consensus       120 ~g~~~~~~~~te~~~gsd~~~~~t~a~~~~~g~~LnG~K~~vs~~~~Ad  168 (231)
T d1rx0a2         120 TMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESD  168 (231)
T ss_dssp             TTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCS
T ss_pred             cccccccccccccccCCCCCCceEEEEEECCEEEEEeEEccccCCCcCC
Confidence            542      3466677776655555555 88999999999999988765

>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.37  E-value=3.5e-07  Score=62.19  Aligned_cols=56  Identities=21%  Similarity=0.264  Sum_probs=47.5

Q ss_pred             ccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccceeeeeeccc---ccccccccc
Q psy5139         146 SRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQILQFQNLS---SDMHMTGLA  213 (216)
Q Consensus       146 ~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~i~~~Q~v~---ad~~~~~~~  213 (216)
                      |.||+.+...++.+|          +.+++.++|.    ++.+++.         +||+||.+||.||   +||++++++
T Consensus         1 G~G~~~~~~~l~~~R----------~~~aa~~~G~----~~~a~~~a~~~a~~R~~~g~pl~~~~~v~~~l~~~~~~~~~   66 (154)
T d3mdea1           1 GAGFKIAMGTFDKTR----------PPVAAGAVGL----AQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKVEL   66 (154)
T ss_dssp             TBHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHhhhcccccCcchhhhhHHHHHHHHHHHHHHH
Confidence            468888888888888          9999999998    6655543         3999999999999   999999988


Q ss_pred             cC
Q psy5139         214 SR  215 (216)
Q Consensus       214 ~r  215 (216)
                      +|
T Consensus        67 ~~   68 (154)
T d3mdea1          67 AR   68 (154)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=1.4e-05  Score=57.89  Aligned_cols=122  Identities=26%  Similarity=0.419  Sum_probs=92.6

Q ss_pred             hhHHHHHHHHHHhCCceeeecCCCCCCCCccHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhchhc
Q psy5139          58 TEQKEKYLPRLAQTDLMGVEIPQEYGGPGLSFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLPRL  137 (216)
Q Consensus        58 ~~~~~~~l~~l~~g~~~~~~~~e~~gG~~~~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~~~  137 (216)
                      ...++++++++.+.+++++.+| ++||.+.......++++++++.+.........+.......+..+|+++|++.|++++
T Consensus        44 ~~~p~~~~~~~~~~g~~~~~i~-~~gg~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l  122 (236)
T d1siqa2          44 EVFHREIISEMGELGVLGPTIK-GYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQL  122 (236)
T ss_dssp             TCCCTHHHHHHHHTTCSSTTCE-ETTEECCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHhhhhhccccccc-ccccCCcCHHHHHHHHHhhhccccccccccccccccchhhhhhhcCHHHHHHhcCcc
Confidence            4567789999999999887774 578889999999999999998776544332222334567788899999999999998


Q ss_pred             cccc------ccccccchhhh--hhhhcccc-CCceeeccceeeeecCcccC
Q psy5139         138 AQTD------VSRTSRGYKAL--EWHAFYGR-TDSLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       138 ~~~~------lg~~~~g~~~~--~~~~~~~~-~~~~~l~g~k~~va~~~~g~  180 (216)
                      .++.      +.+++.|++..  .+++...+ +++|+|||+|.||+++..++
T Consensus       123 ~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~~~~~vlnG~K~~vt~a~~Ad  174 (236)
T d1siqa2         123 AKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMAD  174 (236)
T ss_dssp             HTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEEEEETGGGCS
T ss_pred             CCCCEEecccCcCCCcccccccccccccccccccceEeccccccEecCCCce
Confidence            7763      35666676653  33343455 77899999999999998876

>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: acyl-CoA oxidase N-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 1 and 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.28  E-value=7.7e-05  Score=55.01  Aligned_cols=63  Identities=19%  Similarity=0.134  Sum_probs=47.0

Q ss_pred             hhhHHHHHhcCCHHHhhhhchhccccc------ccccccchhhh--hhhhcccc-CCceeecc-----ceeeeecCc
Q psy5139         115 TLVNDLIIKLGTTEQKEKYLPRLAQTD------VSRTSRGYKAL--EWHAFYGR-TDSLPLND-----HLSHISSGC  177 (216)
Q Consensus       115 ~~~~~~~~~~g~~~~~~~~l~~~~~~~------lg~~~~g~~~~--~~~~~~~~-~~~~~l~g-----~k~~va~~~  177 (216)
                      .+....+..+|+++|++.|++.+.++.      +.++++|++..  .+++.+.+ ++.|+|||     +|.|+++..
T Consensus       103 ~~~~~~i~~~Gt~eQk~~~Lp~l~~G~~~~~~a~TEp~~GSd~~~l~T~A~~d~~gd~~vlng~k~~~~K~wi~~~g  179 (271)
T d1w07a3         103 GMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLG  179 (271)
T ss_dssp             HTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECCTTTT
T ss_pred             HhhHHHHHhhCCHHHHHHhhHHHhCCCeEEEecccCCccccCcccccceeeecCCCceeeecccccceeeeccCCch
Confidence            456677889999999999999987653      35778887764  44444434 67799999     788888643

>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Nitroalkane oxidase
species: Fusarium oxysporum [TaxId: 5507]

Probab=97.19  E-value=3.1e-07  Score=63.58  Aligned_cols=51  Identities=16%  Similarity=0.119  Sum_probs=41.5

Q ss_pred             hhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------ccc-ceeeeeeccc---ccccccccccCC
Q psy5139         152 LEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLS-LQILQFQNLS---SDMHMTGLASRF  216 (216)
Q Consensus       152 ~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg-~~i~~~Q~v~---ad~~~~~~~~r~  216 (216)
                      +...+...|          ..+++.++|.    ++++++.         +|| |||.+||.||   +||+++++++|+
T Consensus         9 ~~~~~~~~r----------~~vaa~alG~----a~~al~~a~~ya~~R~~fG~kpl~~~q~vq~~La~~~~~leaar~   72 (170)
T d2c12a1           9 VETAFAMSA----------ALVGAMAIGT----ARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRL   72 (170)
T ss_dssp             HHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCCTTSSSCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHhhhhhcCCCcccchhhhhhcchhhhhhhhHHHH
Confidence            345566666          8999999999    7777654         398 7999999999   999999998873

>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Medium chain acyl-CoA dehydrogenase, C-domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.18  E-value=5.8e-07  Score=60.88  Aligned_cols=56  Identities=23%  Similarity=0.292  Sum_probs=47.4

Q ss_pred             ccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccceeeeeeccc---ccccccccc
Q psy5139         146 SRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQILQFQNLS---SDMHMTGLA  213 (216)
Q Consensus       146 ~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~i~~~Q~v~---ad~~~~~~~  213 (216)
                      |.||+.....++.+|          ..+++..+|.    ++.+++.         .||+||.++|.||   +||.+++++
T Consensus         1 G~G~~~~~~~L~~eR----------~~~a~~~~G~----~~~~l~~~~~~a~~r~~~g~~l~~~~~v~~~la~~~~~~~~   66 (152)
T d1ukwa1           1 GEGFKIAMQTLNKTR----------IPVAAGSVGV----ARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIET   66 (152)
T ss_dssp             TCHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHH
Confidence            568899888888888          9999888888    6655543         4999999999999   999999887


Q ss_pred             cC
Q psy5139         214 SR  215 (216)
Q Consensus       214 ~r  215 (216)
                      +|
T Consensus        67 ~r   68 (152)
T d1ukwa1          67 AR   68 (152)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Isobutyryl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=1.2e-06  Score=59.31  Aligned_cols=56  Identities=23%  Similarity=0.184  Sum_probs=46.6

Q ss_pred             ccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeec---------cccceeeeeeccc---ccccccccc
Q psy5139         146 SRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSC---------GLSLQILQFQNLS---SDMHMTGLA  213 (216)
Q Consensus       146 ~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~---------~fg~~i~~~Q~v~---ad~~~~~~~  213 (216)
                      |.||+.+...++.+|          ..+++.++|.    ++.+++.         +||+||.+||.||   +||+..++.
T Consensus         1 G~G~~~~~~~l~~~R----------~~~aa~~~G~----~~~al~~a~~~a~~R~~~G~~~~~~~~v~~~la~~~~~~~~   66 (153)
T d1rx0a1           1 GQGFLIAVRGLNGGR----------INIASCSLGA----AHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVA   66 (153)
T ss_dssp             TCHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEETTEEGGGCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHhhhhhccchhhhhhhhhhhHHHHHHHHHHH
Confidence            468888888888888          9999999999    6666644         4999999999999   888888776


Q ss_pred             cC
Q psy5139         214 SR  215 (216)
Q Consensus       214 ~r  215 (216)
                      ++
T Consensus        67 ~~   68 (153)
T d1rx0a1          67 AR   68 (153)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Butyryl-CoA dehydrogenase, C-domain
species: Megasphaera elsdenii [TaxId: 907]

Probab=97.03  E-value=1.3e-06  Score=58.94  Aligned_cols=56  Identities=23%  Similarity=0.332  Sum_probs=47.7

Q ss_pred             ccchhhhhhhhccccCCceeeccceeeeecCcccCCCcceeeeeecc---------ccceeeeeeccc---ccccccccc
Q psy5139         146 SRGYKALEWHAFYGRTDSLPLNDHLSHISSGCVGFDGQLKRWMVSCG---------LSLQILQFQNLS---SDMHMTGLA  213 (216)
Q Consensus       146 ~~g~~~~~~~~~~~~~~~~~l~g~k~~va~~~~g~~~~~~~~~~~~~---------fg~~i~~~Q~v~---ad~~~~~~~  213 (216)
                      |.||+.+...++.+|          ..+++..+|.    ++++++.+         ||+||.+||.||   +||.+++++
T Consensus         1 G~G~~~~~~~l~~~R----------~~~~~~~~G~----~~~~l~~a~~~a~~r~~~g~~l~~~~~v~~~la~~~~~~~~   66 (151)
T d1buca1           1 GKGFKIAMMTLDGGR----------IGVAAQALGI----AEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEA   66 (151)
T ss_dssp             TBHHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHH----------HHHHHHHHHH----HHHHHHHHHHhhcccccccCchhhhhhHHhHHHHHHHHHHH
Confidence            468888888888888          9999999998    77776543         999999999999   999988877


Q ss_pred             cC
Q psy5139         214 SR  215 (216)
Q Consensus       214 ~r  215 (216)
                      +|
T Consensus        67 ~~   68 (151)
T d1buca1          67 AR   68 (151)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
domain: Protein FkbI
species: Streptomyces hygroscopicus [TaxId: 1912]

Probab=96.86  E-value=1.9e-06  Score=58.38  Aligned_cols=41  Identities=17%  Similarity=0.277  Sum_probs=35.4

Q ss_pred             eeeecCcccCCCcceeeeeec---------cccceeeeeeccc---ccccccccccC
Q psy5139         171 SHISSGCVGFDGQLKRWMVSC---------GLSLQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       171 ~~va~~~~g~~~~~~~~~~~~---------~fg~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      ..+++.++|.    ++++++.         +||+||.+||.||   +||.++++++|
T Consensus        15 l~ia~~a~G~----a~~al~~a~~ya~~R~~fG~pl~~~q~vq~~la~~~~~~~a~~   67 (153)
T d1r2ja1          15 KSVAWGCVGI----LRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAA   67 (153)
T ss_dssp             HHHHHHHHHH----HHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHhhcccCCccccccchhhhhhhhhccchhhhh
Confidence            9999999998    6666643         4999999999999   99999998876

>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains
species: Clostridium aminobutyricum [TaxId: 33953]

Probab=96.53  E-value=0.0048  Score=45.19  Aligned_cols=37  Identities=27%  Similarity=0.443  Sum_probs=31.2

Q ss_pred             HHHhcCCh--hHHHHHHHHHHhCCce-eeecCCCCCCCCc
Q psy5139          51 LIIKLGTT--EQKEKYLPRLAQTDLM-GVEIPQEYGGPGL   87 (216)
Q Consensus        51 ~l~~~g~~--~~~~~~l~~l~~g~~~-~~~~~e~~gG~~~   87 (216)
                      .+..++++  +++++|++.+.+++++ +.+++||.+|++.
T Consensus       119 ~~~~~g~~~~e~~~~yl~~~~~~dl~~t~altePq~dr~~  158 (275)
T d1u8va2         119 IDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGL  158 (275)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTS
T ss_pred             HhhhhCcHHHHHHHHHHHHHHhCCeEEEEeeecCCCCCcc
Confidence            45578887  7888999999999986 6899999998764

>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]}

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Megasphaera elsdenii [TaxId: 907]

Probab=95.59  E-value=0.0013  Score=46.88  Aligned_cols=122  Identities=26%  Similarity=0.395  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHHhCCceeeecCCCCCCCCc---cHHHHHHHHHHHHhhCCCceeEeeechhhhHHHHHhcCCHHHhhhhch
Q psy5139          59 EQKEKYLPRLAQTDLMGVEIPQEYGGPGL---SFMTDILIVEEIARVDPSVSILVDIQNTLVNDLIIKLGTTEQKEKYLP  135 (216)
Q Consensus        59 ~~~~~~l~~l~~g~~~~~~~~e~~gG~~~---~~~~~~~v~e~lar~~~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~l~  135 (216)
                      .++++.++++.+.|++.+.+|+++||.+.   .......+.+..+.........+..........+..++++.++..+++
T Consensus        36 ~~p~e~~~~l~~~G~~~~~vP~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~  115 (232)
T d1buca2          36 IYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLV  115 (232)
T ss_dssp             CCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHH
T ss_pred             CCCHHHHHHHHhhhcccccccccccccccccccchheehhhhhhhhccccccccccchhhhhhhHHHHhhhhhhhhhhhh
Confidence            46678999999999999999999986543   444445554444443332221111112344566788999999999999


Q ss_pred             hccccc------ccccccchhhhhhhhcccc-CC-ceeeccceeeeecCcccC
Q psy5139         136 RLAQTD------VSRTSRGYKALEWHAFYGR-TD-SLPLNDHLSHISSGCVGF  180 (216)
Q Consensus       136 ~~~~~~------lg~~~~g~~~~~~~~~~~~-~~-~~~l~g~k~~va~~~~g~  180 (216)
                      .+.++.      +.+++.|.+.........+ ++ +|+|||+|.||+++..++
T Consensus       116 ~~~~G~~~~~~a~te~~~gs~~~~~~t~a~~~~dg~~~lnG~K~~vt~a~~ad  168 (232)
T d1buca2         116 PLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAAD  168 (232)
T ss_dssp             HHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEETTTTCS
T ss_pred             hhhCCCEEecccccccccccccccceEEEEEcCCCEEEEEEEEeeecccccce
Confidence            887653      3466667665444334433 44 699999999999987665

>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: Bromodomain-like
superfamily: Acyl-CoA dehydrogenase C-terminal domain-like
family: acyl-CoA oxidase C-terminal domains
domain: Acyl-coenzyme A oxidase 1, domains 3 and 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.49  E-value=0.013  Score=40.10  Aligned_cols=29  Identities=14%  Similarity=0.178  Sum_probs=23.5

Q ss_pred             eeeecccc-------ceeeeeeccc---ccccccccccC
Q psy5139         187 WMVSCGLS-------LQILQFQNLS---SDMHMTGLASR  215 (216)
Q Consensus       187 ~~~~~~fg-------~~i~~~Q~v~---ad~~~~~~~~r  215 (216)
                      ...+.+||       +||.+||.||   ++|.+.++++|
T Consensus        35 a~~R~qfG~~~~~~~~pI~~~q~vq~~La~~~a~~~a~~   73 (189)
T d1w07a1          35 SAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFR   73 (189)
T ss_dssp             HHHCBCSCC---CCCCBGGGSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHhccccCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33467798       8999999999   89988887654