Psyllid ID: psy5171

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
Protein Sequence
MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSKLNYTSCH
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAkgsklnytsch
Flexible Loop (DISEMBL)
meqtkismeqtkssmeqTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSmeqtklqakgsklnytsch
Low Complexity Region (SEG)
MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSKLNYTSCH
Disordered region (IsUnstruct)
************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
***TKI******************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**************************************************************************************QTKS**************************KRFME***************************************************KLNYTSCH
Disordered Region (DISPRO)
*****ISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTK**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQTKISMEQTKSSMEQTKSFxxxxxxxxxxxxxxxxxxxxxMEQTxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRFMEQTKSTMEQTKSFxxxxxxxxxxxxxxxxxxxxxMEQTKRFxxxxxxxxxxxxxxxxxxxxxxxxxKSFxxxxxxxxxxxxxxxxxxxxxAKGSKLNYTSCH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	180	2.2.26 [Sep-21-2011]
P78559	2803	Microtubule-associated pr	yes	N/A	0.911	0.058	0.239	3e-08

>sp|P78559|MAP1A_HUMAN Microtubule-associated protein 1A OS=Homo sapiens GN=MAP1A PE=1 SV=6

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 3/167 (1%)

Query: 1    MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
            ++Q   ++EQ    +EQ  + +EQ + ++E     +E+   ++EQ     E+   ++EQ 
Sbjct: 1401 VKQQDKALEQKGRDLEQKDTALEQKDKALEPKDKDLEEKDKALEQKDKIPEEKDKALEQK 1460

Query: 61   KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQT---KSSMEQTK 117
             +++EQ   ++E   + +EQ    +EQ +   E+   +++Q   S+E      +  E   
Sbjct: 1461 DTALEQKDKALEPKDKDLEQKDRVLEQKEKIPEEKDKALDQKVRSVEHKAPEDTVAEMKD 1520

Query: 118  RFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQ 164
            R +EQT    EQ   + EQ     E+    +EQ   ++ Q   ++EQ
Sbjct: 1521 RDLEQTDKAPEQKHQAQEQKDKVSEKKDQALEQKYWALGQKDEALEQ 1567

Structural protein involved in the filamentous cross-bridging between microtubules and other skeletal elements.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
260805979	532	hypothetical protein BRAFLDRAFT_105469 [	0.905	0.306	0.307	3e-23
156392478	150	predicted protein [Nematostella vectensi	0.811	0.973	0.383	3e-20
198468518	232	GA28861 [Drosophila pseudoobscura pseudo	0.905	0.702	0.298	3e-19
195165085	211	GL20329 [Drosophila persimilis] gi|19410	0.922	0.786	0.295	1e-18
422304405	933	hypothetical protein MICAE_2060026 [Micr	0.894	0.172	0.306	3e-17
294916646	505	conserved hypothetical protein [Perkinsu	0.922	0.328	0.295	1e-16
123975417	423	latent nuclear antigen [Trichomonas vagi	0.8	0.340	0.483	1e-16
291224653	3948	PREDICTED: neurogenic locus notch homolo	0.916	0.041	0.324	5e-16
449278341	138	hypothetical protein A306_05279, partial	0.65	0.847	0.305	4e-15
198415705	478	PREDICTED: similar to zonadhesin [Ciona	0.888	0.334	0.296	5e-15

>gi|260805979|ref|XP_002597863.1| hypothetical protein BRAFLDRAFT_105469 [Branchiostoma floridae] gi|229283131|gb|EEN53875.1| hypothetical protein BRAFLDRAFT_105469 [Branchiostoma floridae]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 135/166 (81%)

Query: 1   MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
           ++QT+  ++QT++  +QT++  +QT++  +QT++ ++QT+N ++QT++ ++ T+N ++QT
Sbjct: 135 VQQTQNDVQQTQNGAQQTQNGAQQTQNDAQQTQNDVQQTQNDVQQTQNGVQLTQNGVQQT 194

Query: 61  KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
           ++ ++Q ++ ++QT+  ++QT++ ++QT++ ++QT+N ++QT++ ++QT++ ++QT+  +
Sbjct: 195 QNDVQQTQNDVQQTQNDVQQTQNGVQQTQNDVQQTQNDVQQTQNGVQQTQNDVQQTQNDV 254

Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTK 166
           +QT++ ++QT+N ++QT+N ++QT++ ++QT++ ++QT++ ++QT+
Sbjct: 255 QQTQNDVQQTQNGVQQTQNGVQQTQNDVQQTQNDVQQTQNGVQQTQ 300

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156392478|ref|XP_001636075.1| predicted protein [Nematostella vectensis] gi|156223175|gb|EDO44012.1| predicted protein [Nematostella vectensis]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 82/146 (56%)

Query: 15  MEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQT 74
            E+T S  E+T S  E+T S  E+T +  E+T S  E+T +  E+T S  E+  S  E+T
Sbjct: 5   YERTPSIYERTPSIYERTPSIYERTPSIYERTPSIYERTPSIYERTSSIYERTPSIYERT 64

Query: 75  KRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSM 134
               E+T S  E+T SF E+T +  E+T S  E+T S  E+T    E+T S  E+T +  
Sbjct: 65  PSIYERTPSIYERTPSFYERTPSIYERTPSIYERTPSIYERTPSIYERTPSIYERTPSIY 124

Query: 135 EQTKNSMEQTKSFMEQTKSSMEQTKS 160
           E+T +  E+T S  E+T S  E+T S
Sbjct: 125 ERTPSIYERTSSIYERTPSIYERTPS 150

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|198468518|ref|XP_002134048.1| GA28861 [Drosophila pseudoobscura pseudoobscura] gi|198146452|gb|EDY72675.1| GA28861 [Drosophila pseudoobscura pseudoobscura]

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 87/164 (53%)

Query: 1   MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
           +  TK  M   K+++  TK+ M   ++++  TK+ M   K ++  TK+ M    +++  T
Sbjct: 22  LYYTKTPMYNNKATLYYTKAPMYNNKATLHHTKTPMHNNKATLYYTKASMYNNTSTLYYT 81

Query: 61  KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
           K+SM  NK+++  TK  M   K+T+  TK+ M   K ++  TK+ M   K+++  TK  M
Sbjct: 82  KASMYNNKATLHPTKAAMHNNKATLYHTKAAMYNNKATLYYTKAPMYNNKATLHHTKAAM 141

Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQ 164
              K+T+  TK  M   K ++  TK+ M   K+++  TK+ M  
Sbjct: 142 HNNKATLYYTKAPMYNNKATLYYTKTPMYNNKATLYYTKAPMYN 185

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195165085|ref|XP_002023376.1| GL20329 [Drosophila persimilis] gi|194105481|gb|EDW27524.1| GL20329 [Drosophila persimilis]

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 86/166 (51%)

Query: 1   MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
           +  TK  M   K+++  TK+ M    +++  TK+ M   K ++  TK+ M    +++  T
Sbjct: 8   LYYTKTPMYNNKATLYYTKASMYNNNTTLYYTKTPMYNNKATLYYTKASMYNNTSTLYYT 67

Query: 61  KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
           K+SM  NK+++  TK  M   K+T+  TK+ M   K ++  TK+ M   K+++  TK  +
Sbjct: 68  KASMYNNKATLHHTKAAMHNNKATLYHTKAAMYNNKATLYYTKAPMYNNKATLHHTKAAL 127

Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTK 166
              K+T+  TK  M   K ++  TK+ M   K+ +  TK+ M   K
Sbjct: 128 HNNKATLYYTKAPMYNNKATLYYTKTPMYNNKAPLYYTKAPMYNNK 173

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|422304405|ref|ZP_16391751.1| hypothetical protein MICAE_2060026 [Microcystis aeruginosa PCC 9806] gi|389790467|emb|CCI13672.1| hypothetical protein MICAE_2060026 [Microcystis aeruginosa PCC 9806]

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 116/163 (71%), Gaps = 2/163 (1%)

Query: 8   MEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQN 67
           +E ++S ++QTK  +E ++S ++QTK  +E +++ ++QTK  +E +++ ++QTK  +E +
Sbjct: 255 LESSQSELQQTKGLLESSQSELQQTKGLLESSQSELQQTKGLLESSQSELQQTKGLLESS 314

Query: 68  KSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTM 127
           ++ ++QTK  +E ++S ++QTK  +E +++ ++QTK  +E ++S ++QTK  +E +++ +
Sbjct: 315 QTELQQTKGLLESSQSELQQTKGLLESSQSELQQTKGLLESSQSELQQTKGLLESSQTEL 374

Query: 128 EQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSME--QTKLQ 168
           ++T++ ++ +K  +++T++ +   +S ++QTKS +E  QT LQ
Sbjct: 375 QRTRDMLKYSKVELQRTRNLLGTYQSEVQQTKSLLENSQTTLQ 417

Source: Microcystis aeruginosa PCC 9806

Species: Microcystis aeruginosa

Genus: Microcystis

Order: Chroococcales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|294916646|ref|XP_002778385.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239886730|gb|EER10180.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 105/166 (63%)

Query: 1   MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
           +E TK + + T++ +E T++  + TES +E TK+ +E T+  +E T+S +E T++ +E T
Sbjct: 218 VETTKAAFKTTEAPVETTEAPADTTESPVETTKAPIEATEAPVETTESPVETTESPVETT 277

Query: 61  KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
           +S +E  +S +E T+  +E T++ +  T+S +E T+  ++ T++  E +++ +E T+  +
Sbjct: 278 ESPVETTESPVETTEGPVETTEAPLATTESPVETTEAPVDTTEAPAETSEAPVETTEPLV 337

Query: 121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTK 166
           E T+S +E  +  +E T+  +E T++ +E T++ +  T + +E T+
Sbjct: 338 ETTESPVETAEGPVETTEAPVETTEAPVETTEAPVATTDAPVETTE 383

Source: Perkinsus marinus ATCC 50983

Species: Perkinsus marinus

Genus: Perkinsus

Family: Perkinsidae

Order: Perkinsida

Superkingdom: Eukaryota

>gi|123975417|ref|XP_001314181.1| latent nuclear antigen [Trichomonas vaginalis G3] gi|121896342|gb|EAY01496.1| latent nuclear antigen, putative [Trichomonas vaginalis G3]

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 92/151 (60%)

Query: 2   EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
           EQTK   EQTK + EQTK   EQTE   ++T+   EQTK   E+TK   EQ K + EQ K
Sbjct: 185 EQTKEIQEQTKETQEQTKETQEQTEEKQDETEVKQEQTKEIQEETKETQEQIKETQEQIK 244

Query: 62  SSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME 121
            + EQ K + EQ K   ++T+   EQTK   EQTK + EQTK + EQ K + EQTK   E
Sbjct: 245 ETQEQIKETQEQIKETQDETEVKQEQTKEIQEQTKETQEQTKETQEQIKETQEQTKEIQE 304

Query: 122 QTKSTMEQTKNSMEQTKNSMEQTKSFMEQTK 152
           QTK T EQTK + EQT+   ++T+   EQTK
Sbjct: 305 QTKETQEQTKETQEQTEEKQDETEVKQEQTK 335

Source: Trichomonas vaginalis G3

Species: Trichomonas vaginalis

Genus: Trichomonas

Family: Trichomonadidae

Order: Trichomonadida

Superkingdom: Eukaryota

>gi|291224653|ref|XP_002732318.1| PREDICTED: neurogenic locus notch homolog protein 2-like [Saccoglossus kowalevskii]

 Score = 89.7 bits (221), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 77/179 (43%), Gaps = 14/179 (7%)

Query: 1    MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSS--------------MEQTKNSMEQT 46
            +E T   +    S ME T SF+E T S +E T S               ME T + +   
Sbjct: 2269 LETTSSPLTTASSYMETTSSFLETTSSPLETTSSPLETTSSSLATASSYMETTSSPLATA 2328

Query: 47   KSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSM 106
             S+ME T + +E   S      S ME T  F E T S +    S+ME T ++ E T S M
Sbjct: 2329 SSYMETTSSFLETISSPSATASSYMETTSSFFETTSSPLATASSYMETTSSAFETTSSPM 2388

Query: 107  EQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQT 165
                S M  T   +E T S +    N ME T ++ E T S +    S M  T S +E T
Sbjct: 2389 ATASSYMATTSSVLETTSSPLATASNYMETTSSAFETTSSPLATASSYMATTSSVLETT 2447

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|449278341|gb|EMC86196.1| hypothetical protein A306_05279, partial [Columba livia]

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 64/131 (48%)

Query: 31  QTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKS 90
             K+ +E  K  +E +K+ +E  KN +E  K+ +E  K+ +E  K  +E  K+ +E  K+
Sbjct: 1   DPKTILEDPKTILEASKNLLEDPKNLLEDPKNLLEDPKNLLEDPKNLLEDPKNLLEDPKN 60

Query: 91  FMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQ 150
                K  +E  K  +E  K  +E  K  +   K+ +   KN +E  KN +E  K  +E 
Sbjct: 61  LSGGPKKLLEAPKKLLEAPKIILEDPKTILGDPKTILGDPKNLLEDPKNLLEAPKILLED 120

Query: 151 TKSSMEQTKSS 161
            KSS    KSS
Sbjct: 121 PKSSWRHQKSS 131

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|198415705|ref|XP_002122946.1| PREDICTED: similar to zonadhesin [Ciona intestinalis]

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 103/162 (63%)

Query: 5   KISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSM 64
           KIS+E  K+S+E  ++ +E  E+S+E  ++S+E  K S+E  ++ +E  K S+E  K+S+
Sbjct: 70  KISLEPDKTSLEPEETSLEPDETSLEPDETSLEPDKTSLEPDETSLEPDKISLEPDKTSL 129

Query: 65  EQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTK 124
           E +++S+E  +  ++  K ++E  K+ +E  + S+E  ++S+E  ++S+E  +  +E  +
Sbjct: 130 EPDETSLEPDETSLKLDKISLEPDKTSLEPEETSLEPDETSLEPDETSLEPEETSLEPNE 189

Query: 125 STMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTK 166
           +++E  + S+E  + S+E  ++ +E  ++S+E  K+S+E  K
Sbjct: 190 TSLEPDETSLEPDETSLEPNETSLEPDETSLEPDKTSLEPDK 231

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	180
MGI|MGI:1343177	331	Calcoco2 "calcium binding and	0.877	0.477	0.327	3.1e-19
UNIPROTKB|Q1D823	1395	aglZ "Adventurous-gliding moti	0.916	0.118	0.236	1.3e-17
GENEDB_PFALCIPARUM|PF11_0486	2055	PF11_0486 "MAEBL, putative" [P	0.9	0.078	0.345	3.1e-16
UNIPROTKB|Q8IHP3	2055	PF11_0486 "MAEBL, putative" [P	0.9	0.078	0.345	3.1e-16
UNIPROTKB|G4N0Y1	709	MGG_09571 "Uncharacterized pro	0.961	0.244	0.236	3.8e-15
FB|FBgn0030999	481	Mur18B "Mucin related 18B" [Dr	0.888	0.332	0.269	1.7e-14
SGD|S000001431	995	YIL169C "Putative protein of u	0.944	0.170	0.264	1.5e-13
UNIPROTKB|F1PNP2	1143	NEFH "Uncharacterized protein"	0.933	0.146	0.266	8e-13
ZFIN|ZDB-GENE-060503-506	1041	si:ch211-250g4.3 "si:ch211-250	0.905	0.156	0.25	1.2e-12
UNIPROTKB|F1PZZ3	1061	NEFH "Uncharacterized protein"	0.927	0.157	0.280	1.9e-12

MGI|MGI:1343177 Calcoco2 "calcium binding and coiled-coil domain 2" [Mus musculus (taxid:10090)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 52/159 (32%), Positives = 95/159 (59%)

Query:     8 MEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQN 67
             +++ + ++E T+   +  E  +E+ K+S E+ K S E+ K+  E+ K S E+ K+S E+ 
Sbjct:   165 LQRKQVALEATQRVNKTLEHKVEE-KASWEKEKASWEEEKASWEEEKASWEEEKASWEEE 223

Query:    68 KSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTM 127
             K+S E+ K   E+ K++ E+ K+  E+ K S E+ K+S E+ K+S E+ K   E+ K++ 
Sbjct:   224 KASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASWEEEKASW 283

Query:   128 EQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTK 166
             E+ K S E+ K S E+ K+  E+ K+  E  K+  ++ K
Sbjct:   284 EEEKASWEKEKASWEEEKASWEKEKAPWEVEKAPWKEVK 322

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0016605 "PML body" evidence=ISO

GO:0034341 "response to interferon-gamma" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|Q1D823 aglZ "Adventurous-gliding motility protein Z" [Myxococcus xanthus DK 1622 (taxid:246197)]

 Score = 229 (85.7 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 40/169 (23%), Positives = 102/169 (60%)

Query:     1 MEQTKISMEQTKSSMEQTKSFMEQ--TESS--MEQTKSSMEQTKNSMEQTKSFMEQTKNS 56
             +E T    E T  S++   +  +Q  +E S  +E T  ++ QT+ ++ QT+  +  T+N+
Sbjct:   645 LEDTVSQRESTIESLQGDVAARDQRISELSGDLEATSQTLAQTQQTLAQTEQQLADTQNT 704

Query:    57 MEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQT 116
             +  T+ ++ + +  ++ T + ++QT+ T+ QT+  + +T+  ++ T  ++ QT+ ++ QT
Sbjct:   705 LASTEGALAETRGELDATSQTLQQTQQTLAQTEGALAETRGELDATSQTLAQTQQTLAQT 764

Query:   117 KRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQT 165
             ++ +  T++T+  T+ ++ +T+  +E T   ++QT +++E T+ ++++T
Sbjct:   765 EQQLADTQNTLASTEGTLAETRGELEATSQTLQQTHAALEDTRGALQET 813

GO:0005515 "protein binding" evidence=IPI

GENEDB_PFALCIPARUM|PF11_0486 PF11_0486 "MAEBL, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 218 (81.8 bits), Expect = 3.1e-16, P = 3.1e-16
 Identities = 57/165 (34%), Positives = 78/165 (47%)

Query:     2 EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
             E  K+  E+ K   EQ K   E+ +   EQ K   E+ K  +EQ K   E+ K   EQ K
Sbjct:  1575 EVMKLYEEEKKMKAEQLKK-EEEEKIKAEQLKKE-EEEKKKVEQLKKKEEEEKKKAEQLK 1632

Query:    62 SSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME 121
                E+NK   EQ K+  E+ K   E+ K   E+ K   EQ K   E+ K  +EQ K+  E
Sbjct:  1633 KEEEENKIKAEQLKKKEEEEKKKAEELKKEEEEEKKKAEQLKKE-EEEKKKVEQLKKKEE 1691

Query:   122 QTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTK 166
             + K   EQ K   E+ K  +EQ K   E+ K   E+ K   E+ K
Sbjct:  1692 EEKKKAEQLKKEEEENKIKVEQLKKEEEEEKKKAEELKKEEEEKK 1736

GO:0016020 "membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0020007 "apical complex" evidence=TAS

UNIPROTKB|Q8IHP3 PF11_0486 "MAEBL, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 218 (81.8 bits), Expect = 3.1e-16, P = 3.1e-16
 Identities = 57/165 (34%), Positives = 78/165 (47%)

Query:     2 EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
             E  K+  E+ K   EQ K   E+ +   EQ K   E+ K  +EQ K   E+ K   EQ K
Sbjct:  1575 EVMKLYEEEKKMKAEQLKK-EEEEKIKAEQLKKE-EEEKKKVEQLKKKEEEEKKKAEQLK 1632

Query:    62 SSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME 121
                E+NK   EQ K+  E+ K   E+ K   E+ K   EQ K   E+ K  +EQ K+  E
Sbjct:  1633 KEEEENKIKAEQLKKKEEEEKKKAEELKKEEEEEKKKAEQLKKE-EEEKKKVEQLKKKEE 1691

Query:   122 QTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTK 166
             + K   EQ K   E+ K  +EQ K   E+ K   E+ K   E+ K
Sbjct:  1692 EEKKKAEQLKKEEEENKIKVEQLKKEEEEEKKKAEELKKEEEEKK 1736

GO:0008150 "biological_process" evidence=ND

GO:0020007 "apical complex" evidence=TAS

UNIPROTKB|G4N0Y1 MGG_09571 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 202 (76.2 bits), Expect = 3.8e-15, P = 3.8e-15
 Identities = 41/173 (23%), Positives = 92/173 (53%)

Query:     1 MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
             +E+T+  +  TKSS++  KS   +   ++E  K+S  + + +    KS +E  + +    
Sbjct:   348 LEKTQAELTSTKSSLDSDKSAGAEASKALEAEKASRAEAEKAAADAKSALEAEQKAHADA 407

Query:    61 KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
             K ++E  K++    K+ +E  K+   +TK+ +E  K +  +TK+++E  K +  + K+ +
Sbjct:   408 KKAVEVEKAAAADAKKAVEAEKTAHAETKTALEAEKKAHAETKTALETEKIAAAEAKKSL 467

Query:   121 EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSK 173
             +  K++     +++E  K+++   +  +E  K +  +TKS++E  K  A  +K
Sbjct:   468 DSEKASKADANSALETQKSAVADAQKAVEAEKKAHAETKSALEAEKTAAADAK 520

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0030999 Mur18B "Mucin related 18B" [Drosophila melanogaster (taxid:7227)]

 Score = 193 (73.0 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 44/163 (26%), Positives = 95/163 (58%)

Query:     2 EQTKISMEQTKSSMEQTKSFME---QTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSME 58
             E+T    E+T  S E+T +      +T ++  +T  + +++ ++ E+T S  E+T ++ E
Sbjct:   100 EETTAGNEETTVSEEETSTDASGDVETTTAAPETSPADQESSSAPEETTSAPEETTSAPE 159

Query:    59 QTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKR 118
             +T S+ E++ S+ E++    E+T S  E++ S  E++ ++ E+T S+ E++ S+ +QT  
Sbjct:   160 ETTSAPEESSSAPEESSSAPEETTSAPEESSSAPEESSSAPEETTSAPEESSSAPDQTSS 219

Query:   119 FMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSS 161
                ++ +  E+T ++ EQT ++ E+T S   + +SS   + +S
Sbjct:   220 APNESSAPPEETSSAPEQTSSAPEETSSAPAEPESSSTSSAAS 262

GO:0006030 "chitin metabolic process" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0008061 "chitin binding" evidence=IEA

GO:0031012 "extracellular matrix" evidence=ISM

GO:0005201 "extracellular matrix structural constituent" evidence=ISM

SGD|S000001431 YIL169C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 189 (71.6 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 45/170 (26%), Positives = 78/170 (45%)

Query:     7 SMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQ 66
             S+ Q+ SS+    S + Q+ SS     SS+ Q+ +S     S + Q+ +S     SS+ Q
Sbjct:    94 SVSQSSSSVSDVSSSVSQSSSSASDVSSSVSQSASSTSDVSSSVSQSSSSASDVSSSVSQ 153

Query:    67 NKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKST 126
             + SS       + Q+ S+     S + Q+ +S     SS+ Q+ SS       + Q+ S+
Sbjct:   154 SSSSASDVSSSVSQSASSASDVSSSVSQSASSTSDVSSSVSQSSSSASDVSSSVSQSSSS 213

Query:   127 MEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSKLNY 176
                  +S+ Q+ +S     S + Q+ SS     SS  Q+   A GS  ++
Sbjct:   214 ASDVSSSVSQSASSTSDVSSSVSQSASSTSGVSSSGSQSVSSASGSSSSF 263

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0004871 "signal transducer activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PNP2 NEFH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 183 (69.5 bits), Expect = 8.0e-13, P = 8.0e-13
 Identities = 45/169 (26%), Positives = 94/169 (55%)

Query:     2 EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
             E+ K  +++   S E+ KS +++   S E+ KS +++   S E+ KS +++   S E+ K
Sbjct:   600 EKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAK 659

Query:    62 SSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME 121
             S +++   S E+ K  +++   + E+TKS +++   S E+ KS  E+ KS +++  +  E
Sbjct:   660 SPVKEEAKSPEKAKSPVKEEAKSPEKTKSPVKEEAKSPEKAKSP-EKAKSPVKEEAKSPE 718

Query:   122 QTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAK 170
             + KS +++   S E+ K+ +++     E+ KS +++   S E+ K   K
Sbjct:   719 KAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVK 767

GO:0005882 "intermediate filament" evidence=IEA

ZFIN|ZDB-GENE-060503-506 si:ch211-250g4.3 "si:ch211-250g4.3" [Danio rerio (taxid:7955)]

 Score = 181 (68.8 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 43/172 (25%), Positives = 91/172 (52%)

Query:     2 EQTKISME--QTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQ 59
             E T+++ E  Q + ++   K+ ++     M++ K  + + +  +EQ +S ++  ++S++Q
Sbjct:   175 EITRMTTEKGQLERTITHMKAEIDHIRERMDRNKEEVNRERERVEQMRSDLQAEQSSLQQ 234

Query:    60 TKSSMEQNKSSME----QTKRFMEQTKSTMEQTK---SFMEQTKNSMEQTKSSMEQTKSS 112
              +  +   + ++E    +T R  E+ +S  E TK     MEQ K++++   + +E     
Sbjct:   235 KRDEIMTERQNLEMIRYETLRQQEELESNRESTKHEMERMEQMKSAIQVQINEIEMKIGE 294

Query:   113 MEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQ 164
              ++ K  MEQ K+ +E  KN +E+ K  +++ +   EQ K  ++Q K  MEQ
Sbjct:   295 TQKAKDLMEQMKAEIEDEKNELEKKKEDIKRQRDQFEQIKLDLQQVKMEMEQ 346

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1PZZ3 NEFH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 179 (68.1 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 48/171 (28%), Positives = 98/171 (57%)

Query:     2 EQTKISMEQTKSSM-EQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
             E+ K S E+ KS + E+ KS +++   S E+TKS +++   S E+ KS  E+ K+ +++ 
Sbjct:   622 EEAK-SPEKAKSPVKEEAKSPVKEEAKSPEKTKSPVKEEAKSPEKAKS-PEKAKSPVKEE 679

Query:    61 KSSMEQNKSSMEQTKRFMEQTKSTM-EQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRF 119
               S E+ KS +++  +  E+ KS + E+ KS  ++ K+ +++   S E+ KS +++  + 
Sbjct:   680 AKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKKAKSPVKEEAKSPEKAKSPVKEEAKS 739

Query:   120 MEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAK 170
              E+ KS +++   S E+ K+ +++     E+ KS +++   S E+ K   K
Sbjct:   740 PEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPEK 790

GO:0005882 "intermediate filament" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	180
COG0840	408	COG0840, Tar, Methyl-accepting chemotaxis protein	3e-05
COG0840	408	COG0840, Tar, Methyl-accepting chemotaxis protein	4e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04
COG0840	408	COG0840, Tar, Methyl-accepting chemotaxis protein	0.001
cd11386	200	cd11386, MCP_signal, Methyl-accepting chemotaxis p	0.002
pfam09991	290	pfam09991, DUF2232, Predicted membrane protein (DU	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
COG0840	408	COG0840, Tar, Methyl-accepting chemotaxis protein	0.004

>gnl|CDD|223910 COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 19/123 (15%), Positives = 60/123 (48%)

Query: 37  EQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTK 96
           E++ +S ++    +E+ +N        ME++ S + +  + +E+T S++ +  + +E+  
Sbjct: 285 ERSADSAKEIGLLIEEIQNEAADAVEHMEESASEVSEGVKLVEETGSSLGEIAAAIEEVS 344

Query: 97  NSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSME 156
             + +  ++ E+  + +E+    +E+     ++   ++E+   + E+ K   E+    + 
Sbjct: 345 QLISEIAAATEEQTAVLEEINASIEELDDVTQENAAAVEELAAASEELKELAEKLLELVA 404

Query: 157 QTK 159
           + K
Sbjct: 405 KFK 407

Length = 408

>gnl|CDD|223910 COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 17/123 (13%), Positives = 61/123 (49%)

Query: 9   EQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNK 68
           E++  S ++    +E+ ++        ME++ + + +    +E+T +S+ +  +++E+  
Sbjct: 285 ERSADSAKEIGLLIEEIQNEAADAVEHMEESASEVSEGVKLVEETGSSLGEIAAAIEEVS 344

Query: 69  SSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTME 128
             + +     E+  + +E+  + +E+  +  ++  +++E+  ++ E+ K   E+    + 
Sbjct: 345 QLISEIAAATEEQTAVLEEINASIEELDDVTQENAAAVEELAAASEELKELAEKLLELVA 404

Query: 129 QTK 131
           + K
Sbjct: 405 KFK 407

Length = 408

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 2/165 (1%)

Query: 9    EQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNK 68
            E+ K  +EQ K    + +   E+ K + E+ K    +     E+ K   E+ K + E  K
Sbjct: 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688

Query: 69   SSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTME 128
             + E  K+  E+ K   E+ K    + K   E+ K + E+ K   E+ K+  E+ K   E
Sbjct: 1689 KAAEALKKEAEEAKK-AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747

Query: 129  QTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSK 173
            + K   E+ K  +   K   E+    + + K ++ + +L  +  K
Sbjct: 1748 EAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791

Length = 2084

>gnl|CDD|223910 COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 19/114 (16%), Positives = 57/114 (50%)

Query: 58  EQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTK 117
           E++  S ++    +E+ +         ME++ S + +    +E+T SS+ +  +++E+  
Sbjct: 285 ERSADSAKEIGLLIEEIQNEAADAVEHMEESASEVSEGVKLVEETGSSLGEIAAAIEEVS 344

Query: 118 RFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKG 171
           + + +  +  E+    +E+   S+E+     ++  +++E+  ++ E+ K  A+ 
Sbjct: 345 QLISEIAAATEEQTAVLEEINASIEELDDVTQENAAAVEELAAASEELKELAEK 398

Length = 408

>gnl|CDD|206779 cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 30/184 (16%), Positives = 77/184 (41%), Gaps = 21/184 (11%)

Query: 2   EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
           E+   S+E+  +S +Q     +Q     E+ + + E   N M Q    +++  +++E+ +
Sbjct: 1   EELSASIEEVAASADQVAETSQQAAELAEKGREAAEDAINQMNQIDESVDEAVSAVEELE 60

Query: 62  SSMEQNKSSMEQTKRFMEQTKS-----------TMEQTKSFM----------EQTKNSME 100
            S  +    +E      EQT               E  + F           E++  + +
Sbjct: 61  ESSAEIGEIVEVIDDIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEESAEAAK 120

Query: 101 QTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKS 160
           + +  +E+ +   E+    ME+T   +E+    +E+T  + E+  + +E+    +++  +
Sbjct: 121 EIEELIEEIQEQTEEAVEAMEETSEEVEEGVELVEETGRAFEEIVASVEEVADGIQEISA 180

Query: 161 SMEQ 164
           + ++
Sbjct: 181 ATQE 184

Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW. Length = 200

>gnl|CDD|220507 pfam09991, DUF2232, Predicted membrane protein (DUF2232)

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 4/45 (8%)

Query: 36  MEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQ 80
           +E  + S+EQ  +  +            + + K  +E+    +  
Sbjct: 119 IEMIRESVEQALTLYKG----AGMPGDVLAELKELLEEMFSLLLL 159

This domain, found in various hypothetical bacterial proteins, has no known function. Length = 290

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 37.4 bits (86), Expect = 0.003
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 1/156 (0%)

Query: 2    EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
            E+ K  +EQ K    + K   E+ + + E+ K    +     E+ K   E+ K + E  K
Sbjct: 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688

Query: 62   SSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME 121
             + E  K   E+ K+  E+ K    + K   E+ K + E+ K   E+ K   E+ K+  E
Sbjct: 1689 KAAEALKKEAEEAKK-AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747

Query: 122  QTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQ 157
            + K   E+ K      K   ++ +   ++ ++ +E+
Sbjct: 1748 EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783

Length = 2084

>gnl|CDD|223910 COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 11/122 (9%), Positives = 48/122 (39%)

Query: 8   MEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQN 67
           +   +  ++  +   E    + E+  +S  +     +Q    +E+  +++E+   ++++ 
Sbjct: 126 ILNLRQIIDAVQDNAEALSGASEEIAASATELSARADQQAESLEEVASAIEELSETVKEV 185

Query: 68  KSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTM 127
             + ++      +     E+    + Q    M++    + +    + ++ + +E+  S +
Sbjct: 186 AFNAKEAAALASEASQVAEEGGEEVRQAVEQMQEIAEELAEVVKKLSESSQEIEEITSVI 245

Query: 128 EQ 129
             
Sbjct: 246 NS 247

Length = 408

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	180
smart00283	262	MA Methyl-accepting chemotaxis-like domains (chemo	96.82
PRK09793	533	methyl-accepting protein IV; Provisional	95.79
PRK15048	553	methyl-accepting chemotaxis protein II; Provisiona	95.25
PF00015	213	MCPsignal: Methyl-accepting chemotaxis protein (MC	93.51

>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)

Probab=96.82  E-value=0.17  Score=39.79  Aligned_cols=42  Identities=7%  Similarity=0.245  Sum_probs=15.8

Q ss_pred             HHHHhhhhhHhhhhhhHHhhhhhhhhhhHHHhhhhhHHHhhh
Q psy5171         118 RFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTK  159 (180)
Q Consensus       118 ssl~Q~~sSl~Q~asSl~Qt~sSl~q~~ssl~Qt~ssl~Qt~  159 (180)
                      ..++.+....+......++...+.++......+......+..
T Consensus       200 ~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~  241 (262)
T smart00283      200 DLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEIS  241 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333

Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.

>PRK09793 methyl-accepting protein IV; Provisional

Probab=95.79  E-value=1.5  Score=40.18  Aligned_cols=44  Identities=20%  Similarity=0.333  Sum_probs=16.0

Q ss_pred             HhHHHHHhhhhhHhhhhhhHHhhhhhhhhhhHHHhhhhhHHHhh
Q psy5171         115 QTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQT  158 (180)
Q Consensus       115 Q~assl~Q~~sSl~Q~asSl~Qt~sSl~q~~ssl~Qt~ssl~Qt  158 (180)
                      ++...+.++....++.....++....+.+.....+++....++.
T Consensus       447 ~~~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~~~~~~~~  490 (533)
T PRK09793        447 RVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQNASLVEEA  490 (533)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333

>PRK15048 methyl-accepting chemotaxis protein II; Provisional

Probab=95.25  E-value=2.3  Score=38.76  Aligned_cols=17  Identities=35%  Similarity=0.495  Sum_probs=6.1

Q ss_pred             hhHhhhhHHHhhhhhhh
Q psy5171          13 SSMEQTKSFMEQTESSM   29 (180)
Q Consensus        13 sSl~Q~~ssl~Qt~sSl   29 (180)
                      ..++++...+++...++
T Consensus       298 ~~i~~i~~s~eeis~~~  314 (553)
T PRK15048        298 SALEETAASMEQLTATV  314 (553)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []

Probab=93.51  E-value=2.8  Score=32.52  Aligned_cols=106  Identities=26%  Similarity=0.377  Sum_probs=54.8

Q ss_pred             HhhhhHHHhhhhhhhhhhhhhhhhhhHHHhhhHHHHHhHHhHhhhhhhHHhhhhhHHHhHHHHHhhhhhHhhhhhhHHhh
Q psy5171          58 EQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQT  137 (180)
Q Consensus        58 ~Q~~sSl~Q~~sSldQ~~sSl~Q~asSl~Q~~ssl~Q~asSl~Qt~sSl~Q~asSl~Q~assl~Q~~sSl~Q~asSl~Qt  137 (180)
                      +++..+...|...++.+....+.....++.....++........+...+..+...+......+..+.....+.+...++.
T Consensus        89 ~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i  168 (213)
T PF00015_consen   89 EQTSESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQI  168 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHH
Confidence            34444444555555555444444444455444444444455555555555555555555555555555555555555555


Q ss_pred             hhhhhhhhHHHhhhhhHHHhhhhhhh
Q psy5171         138 KNSMEQTKSFMEQTKSSMEQTKSSME  163 (180)
Q Consensus       138 ~sSl~q~~ssl~Qt~ssl~Qt~sSl~  163 (180)
                      ...+.+.....++.....++.....+
T Consensus       169 ~~~i~~i~~~~~~~~~~~~~~~~~~~  194 (213)
T PF00015_consen  169 NESIEEISEISEQISASSEEIAEAAE  194 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555444443

Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	180
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-06
2ch7_A	309	Methyl-accepting chemotaxis protein; receptor, fou	4e-06
2ch7_A	309	Methyl-accepting chemotaxis protein; receptor, fou	1e-05
2ch7_A	309	Methyl-accepting chemotaxis protein; receptor, fou	1e-05
2ch7_A	309	Methyl-accepting chemotaxis protein; receptor, fou	2e-05
2ch7_A	309	Methyl-accepting chemotaxis protein; receptor, fou	3e-05
2ch7_A	309	Methyl-accepting chemotaxis protein; receptor, fou	3e-05
2ch7_A	309	Methyl-accepting chemotaxis protein; receptor, fou	9e-05
2ch7_A	309	Methyl-accepting chemotaxis protein; receptor, fou	2e-04
2ch7_A	309	Methyl-accepting chemotaxis protein; receptor, fou	5e-04
2ch7_A	309	Methyl-accepting chemotaxis protein; receptor, fou	6e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.1 bits (130), Expect = 4e-09
 Identities = 24/163 (14%), Positives = 67/163 (41%)

Query: 8    MEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQN 67
             E+    ++  K  M+Q    +E+     E  +  ++  K   +     ME     ME  
Sbjct: 939  EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ 998

Query: 68   KSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTM 127
             + + + ++ +E+  S +    +  E+   ++ + K+  E   S +E   +  E+++  +
Sbjct: 999  NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1058

Query: 128  EQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAK 170
            E+ K  +E   + + +  + ++   + ++   +  E+    A 
Sbjct: 1059 EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAAL 1101

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 23/164 (14%), Positives = 64/164 (39%)

Query: 1    MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
             E+    ++  K  M+Q    +E+     E  +  ++  K + +     ME     ME  
Sbjct: 939  EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQ 998

Query: 61   KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
             + + + +  +E+    +    +  E+    + + KN  E   S +E      E++++ +
Sbjct: 999  NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1058

Query: 121  EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQ 164
            E+ K  +E   + + +    ++   + ++   +  E+   +   
Sbjct: 1059 EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 27/170 (15%), Positives = 67/170 (39%)

Query: 1    MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
            +   K  +E+    ME      E+    ++  K  M+Q    +E+     E  +  ++  
Sbjct: 918  LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977

Query: 61   KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
            K + +     ME     ME   + + + +  +E+  + +    +  E+   ++ + K   
Sbjct: 978  KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037

Query: 121  EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAK 170
            E   S +E      E+++  +E+ K  +E   S + +  + ++    + K
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 27/173 (15%), Positives = 70/173 (40%)

Query: 1    MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
             E+ ++ +   K  +E+    ME      E+    ++  K  M+Q    +E+     E  
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 61   KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
            +  ++  K + +   + ME     ME   + + + +  +E+  S +    +  E+  + +
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 121  EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSK 173
             + K+  E   + +E      E+++  +E+ K  +E   S + +   + +   
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 23/170 (13%), Positives = 67/170 (39%), Gaps = 3/170 (1%)

Query: 1    MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
            M+Q  + +E+     E  +  ++  + + +     ME     ME   + + + +  +E+ 
Sbjct: 953  MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012

Query: 61   KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
             S +  N +  E+  + + + K+  E   S +E      E+++  +E+ K  +E      
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS-- 1070

Query: 121  EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAK 170
                  + + +  + + K  + + +  ++   + +E   S       + +
Sbjct: 1071 -DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 24/164 (14%), Positives = 65/164 (39%)

Query: 1    MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
            +E+    ME      E+    ++  +  M+Q    +E+     E  +  ++  K + +  
Sbjct: 925  LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984

Query: 61   KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
               ME +   ME     + + +  +E+  S +       E+   ++ + K+  E     +
Sbjct: 985  IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044

Query: 121  EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQ 164
            E      E+++  +E+ K  +E   S + +  + ++   + ++ 
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 24/172 (13%), Positives = 69/172 (40%)

Query: 1    MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
             E     +EQ  + + + K+ +++   +  +  +  E+ +  +   K  +E+  + ME  
Sbjct: 876  AEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR 935

Query: 61   KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
                E+    ++  K+ M+Q    +E+     E  +  ++  K + +     ME     M
Sbjct: 936  IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995

Query: 121  EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGS 172
            E   + + + +  +E+  + +    +  E+   ++ + K+  E    + +  
Sbjct: 996  EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR 1047

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 26/173 (15%), Positives = 68/173 (39%)

Query: 1    MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
            + + K  +++   +  +  +  E+    +   K  +E+  + ME      E+    ++  
Sbjct: 890  LCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAE 949

Query: 61   KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
            K  M+Q    +E+     E  +  ++  K   +     ME     ME   + + + ++ +
Sbjct: 950  KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009

Query: 121  EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSK 173
            E+  S +       E+   ++ + K+  E   S +E      E+++ + +  K
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK 1062

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 25/170 (14%), Positives = 64/170 (37%)

Query: 1    MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
            +EQ    + + K+ +++      +  +  E+ +  +   K  +E+    ME      E+ 
Sbjct: 883  LEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEER 942

Query: 61   KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
               ++  K  M+Q    +E+     E  +  ++  K + +     ME     ME     +
Sbjct: 943  SQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL 1002

Query: 121  EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAK 170
             + +  +E+  + +       E+    + + K+  E   S +E    + +
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 24/164 (14%), Positives = 63/164 (38%)

Query: 1    MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
             ++     ++ +   E     +EQ  + + + K+ +++   +  +  +  E+ +  +   
Sbjct: 862  KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAK 921

Query: 61   KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
            K  +E+    ME      E+    ++  K  M+Q    +E+     E  +  ++  K   
Sbjct: 922  KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981

Query: 121  EQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQ 164
            +     ME     ME   N + + +  +E+  S +    +  E+
Sbjct: 982  DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 16/157 (10%), Positives = 57/157 (36%), Gaps = 4/157 (2%)

Query: 23   EQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTK 82
             ++    ++    +E     +++      +   S+ +  +++E   S+  +  R   +  
Sbjct: 913  ARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972

Query: 83   STMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME----QTKSTMEQTKNSMEQTK 138
               E+          S+++  + + +     +  K+ +E    + K   EQ  + +++  
Sbjct: 973  RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032

Query: 139  NSMEQTKSFMEQTKSSMEQTKSSMEQTKLQAKGSKLN 175
              ++  K  + +      +  +   + KL  +  +L 
Sbjct: 1033 TLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLE 1069

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 18/167 (10%), Positives = 65/167 (38%), Gaps = 6/167 (3%)

Query: 2    EQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTK 61
            ++  I +E     +++      +   S+ +  +++E T ++  +      +     E+  
Sbjct: 920  KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA 979

Query: 62   SSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFME 121
             +      S+++    + + +  + QT++  +  +   ++ K   EQ  S +++    ++
Sbjct: 980  KNATNRVLSLQEE---IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036

Query: 122  QTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTKLQ 168
              K  + +  +   +      + K   E  +  ++    + E+ + Q
Sbjct: 1037 TEKEELNRRIHDQAKEITETMEKKLVEETKQLELDL---NDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 19/147 (12%), Positives = 58/147 (39%), Gaps = 6/147 (4%)

Query: 1    MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
            +E   + +++      +    + +  +++E T S+  +   S  +     E+   +    
Sbjct: 926  LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985

Query: 61   KSSMEQNKSSMEQTKRFMEQTKSTME----QTKSFMEQTKNSMEQTKSSMEQTKSSMEQT 116
              S+++  + + +     +  K T+E    + K   EQ  + +++  + ++  K  + + 
Sbjct: 986  VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR- 1044

Query: 117  KRFMEQTKSTMEQTKNSMEQTKNSMEQ 143
             R  +Q K   E  +  + +    +E 
Sbjct: 1045 -RIHDQAKEITETMEKKLVEETKQLEL 1070

>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B Length = 309

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 21/139 (15%), Positives = 58/139 (41%)

Query: 20  SFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFME 79
           S M+  ++       S+E+   + E+  + +      M+   + +E   +S+++T    E
Sbjct: 2   SHMKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSE 61

Query: 80  QTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKN 139
           +  S  +      +Q  +  +Q+    ++   ++++         ++ +  +  +E  + 
Sbjct: 62  EISSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQK 121

Query: 140 SMEQTKSFMEQTKSSMEQT 158
             E+  SF+E   +  EQT
Sbjct: 122 GAEEITSFVETINAIAEQT 140

>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B Length = 309

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 16/122 (13%), Positives = 47/122 (38%)

Query: 1   MEQTKISMEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQT 60
           M+  +        S+E+     E+  + +      M+     +E   + +++T    E+ 
Sbjct: 4   MKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEI 63

Query: 61  KSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFM 120
            S+ +    S +Q   F +Q+    ++    +++         +S +  +  +E  ++  
Sbjct: 64  SSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGA 123

Query: 121 EQ 122
           E+
Sbjct: 124 EE 125

>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B Length = 309

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 16/122 (13%), Positives = 51/122 (41%)

Query: 8   MEQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQN 67
           M+  ++        +E+   + E+  + +      M+   + +E    S+++T +  E+ 
Sbjct: 4   MKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEI 63

Query: 68  KSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTM 127
            S+ +      +Q  S  +Q+    ++  +++++         +S +  +R +E  +   
Sbjct: 64  SSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGA 123

Query: 128 EQ 129
           E+
Sbjct: 124 EE 125

>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B Length = 309

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 19/137 (13%), Positives = 54/137 (39%)

Query: 15  MEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQT 74
           M+  ++       S+E+   + E+  N +      M+     +E   +S+++  +  E+ 
Sbjct: 4   MKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEI 63

Query: 75  KRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSM 134
               +    + +Q  SF +Q+    ++   ++++            +  +  +E  +   
Sbjct: 64  SSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGA 123

Query: 135 EQTKNSMEQTKSFMEQT 151
           E+  + +E   +  EQT
Sbjct: 124 EEITSFVETINAIAEQT 140

>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B Length = 309

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 16/117 (13%), Positives = 47/117 (40%)

Query: 48  SFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSME 107
           S M+  +        S+E+   + E+    +      M+   + +E    S+++T +  E
Sbjct: 2   SHMKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSE 61

Query: 108 QTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQ 164
           +  S+ +      +Q  S  +Q+    ++  +++++         +S +  +  +E 
Sbjct: 62  EISSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVES 118

>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B Length = 309

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 15/122 (12%), Positives = 51/122 (41%)

Query: 43  MEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQT 102
           M+  ++       S+E+   + E+  + +    + M+   + +E   + +++T    E+ 
Sbjct: 4   MKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEI 63

Query: 103 KSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSM 162
            S+ +    S +Q   F +Q+    ++  +++++         +  +  +  +E  +   
Sbjct: 64  SSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVERVVESFQKGA 123

Query: 163 EQ 164
           E+
Sbjct: 124 EE 125

>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B Length = 309

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 12/128 (9%), Positives = 58/128 (45%)

Query: 37  EQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTK 96
           E+++ + E  +  + + ++  E       +  + +E+  +  ++    +      +E+  
Sbjct: 173 EESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERIN 232

Query: 97  NSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSME 156
             ++   +++E+  +++++    M +     E+  NS+++    +++  +  E+  S ++
Sbjct: 233 EMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQ 292

Query: 157 QTKSSMEQ 164
             + +++ 
Sbjct: 293 TIRENVQM 300

>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B Length = 309

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 14/137 (10%), Positives = 59/137 (43%)

Query: 9   EQTKSSMEQTKSFMEQTESSMEQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNK 68
           E+++ + E  +  + +  S  E       +    +E+     ++    +     ++E+  
Sbjct: 173 EESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERIN 232

Query: 69  SSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTME 128
             ++     +E+  + +++  + M +   + E+  +S+++  + +++     E+  S ++
Sbjct: 233 EMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQ 292

Query: 129 QTKNSMEQTKNSMEQTK 145
             + +++  K  + + K
Sbjct: 293 TIRENVQMLKEIVARYK 309

>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B Length = 309

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 12/110 (10%), Positives = 43/110 (39%)

Query: 57  MEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTKSFMEQTKNSMEQTKSSMEQTKSSMEQT 116
           M+  ++       S+E+  +  E+  + +      M+     +E   +S+++T +  E+ 
Sbjct: 4   MKDVQTETFSVAESIEEISKANEEITNQLLGISKEMDNISTRIESISASVQETTAGSEEI 63

Query: 117 KRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQTKSSMEQTK 166
               +    + +Q  +  +Q+    ++    +++         +S +  +
Sbjct: 64  SSATKNIADSAQQAASFADQSTQLAKEAGDALKKVIEVTRMISNSAKDVE 113

>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B Length = 309

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 14/137 (10%), Positives = 63/137 (45%)

Query: 30  EQTKSSMEQTKNSMEQTKSFMEQTKNSMEQTKSSMEQNKSSMEQTKRFMEQTKSTMEQTK 89
           E+++ + E  +  + + +S  E       +  + +E+     ++    +      +E+  
Sbjct: 173 EESQQASENVRRVVNEIRSIAEDAGKVSSEITARVEEGTKLADEADEKLNSIVGAVERIN 232

Query: 90  SFMEQTKNSMEQTKSSMEQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFME 149
             ++    ++E+  +++++  ++M +  +  E+  +++++    +++   S E+  S ++
Sbjct: 233 EMLQNIAAAIEEQTAAVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEEVTSRVQ 292

Query: 150 QTKSSMEQTKSSMEQTK 166
             + +++  K  + + K
Sbjct: 293 TIRENVQMLKEIVARYK 309

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	180
3zx6_A	341	HAMP, methyl-accepting chemotaxis protein I; signa	96.9
2ch7_A	309	Methyl-accepting chemotaxis protein; receptor, fou	96.1
1qu7_A	227	Methyl-accepting chemotaxis protein I; serine, fou	92.86
1qu7_A	227	Methyl-accepting chemotaxis protein I; serine, fou	86.51

>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}

Probab=96.90  E-value=0.16  Score=42.98  Aligned_cols=37  Identities=14%  Similarity=0.244  Sum_probs=13.3

Q ss_pred             HHhhhhhHhhhhhhHHhhhhhhhhhhHHHhhhhhHHH
Q psy5171         120 MEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSME  156 (180)
Q Consensus       120 l~Q~~sSl~Q~asSl~Qt~sSl~q~~ssl~Qt~ssl~  156 (180)
                      +.++....++......+....+.+.....+++...++
T Consensus       243 ~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~  279 (341)
T 3zx6_A          243 MGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVE  279 (341)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333

>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B

Probab=96.10  E-value=0.41  Score=38.36  Aligned_cols=39  Identities=15%  Similarity=0.343  Sum_probs=14.1

Q ss_pred             HHHhhhhhHhhhhhhHHhhhhhhhhhhHHHhhhhhHHHh
Q psy5171         119 FMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQ  157 (180)
Q Consensus       119 sl~Q~~sSl~Q~asSl~Qt~sSl~q~~ssl~Qt~ssl~Q  157 (180)
                      ...++.....+.....++.....++.....++.....++
T Consensus       248 ~~~~i~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~  286 (309)
T 2ch7_A          248 AVDEITTAMTENAKNAEEITNSVKEVNARLQEISASTEE  286 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333

>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1

Probab=92.86  E-value=3.2  Score=33.61  Aligned_cols=52  Identities=13%  Similarity=0.243  Sum_probs=19.9

Q ss_pred             HhhhhhHHHhHHHHHhhhhhHhhhhhhHHhhhhhhhhhhHHHhhhhhHHHhh
Q psy5171         107 EQTKSSMEQTKRFMEQTKSTMEQTKNSMEQTKNSMEQTKSFMEQTKSSMEQT  158 (180)
Q Consensus       107 ~Q~asSl~Q~assl~Q~~sSl~Q~asSl~Qt~sSl~q~~ssl~Qt~ssl~Qt  158 (180)
                      +.+..........+.++....++.....++....+.......+++....++.
T Consensus       150 ~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~  201 (227)
T 1qu7_A          150 AEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEQS  201 (227)
T ss_dssp             HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333333333333

>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1

Probab=86.51  E-value=11  Score=30.32  Aligned_cols=20  Identities=45%  Similarity=0.518  Sum_probs=8.0

Q ss_pred             HHHhhhhhHhhhhHHHhhhh
Q psy5171           7 SMEQTKSSMEQTKSFMEQTE   26 (180)
Q Consensus         7 s~~Q~~sSl~Q~~ssl~Qt~   26 (180)
                      .++++...+++.........
T Consensus         8 ~~~~~~~~~~e~~~~~~~i~   27 (227)
T 1qu7_A            8 SLEQTAASMEQLTATVKQNA   27 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00