Psyllid ID: psy5313

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-

MSILSHISLSKIVISVGLGFMIHSVWSIYKLSLPPDCPVERTCLKSSLLRNPKLELILFSSVKEKPTGRDVELILEKKKFDYNQAFEENIKLNVPYKTRMNGTLFLHMFIIAHRPNQNWDWDSLARHSNQYEIKVYRKVPLSKYALPPDRTFHLLSEEGPQQKSRKPVTHIKSLIEFNMLIDVHKFPRLEIPFELYNYFRISNNEFLPIVAYNLLNDRNTFLKEVKPDTNEMEIQFKYSPISYGKLRLMLHVEASFKSIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVSFVHLLFDFLAFKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEVWKLLKIFKFDSRSWRFVRKTESAHERRTTAYDLEAMRYLSYILYPLCLATAVYSFVYSEHKSVYSWLLRSLVNAVYAFGFIFMLPQLFINYKLKSVAHLPWRTFMYKAFNTFIDDVFAFLITMPTMHRLACFRDDIIFLIYLYQRCFEPAIIP

cccccccHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccccccEEEEEEEEcccccccccccEEEEEccccccccEEEEEEEEccHHHHcccEEEEEEEEEcccccccccccHHHHccccccEEEEEEEEccccccccccccccccccccccccccccEEEEccEEEEEEccccccccccccHHHHccEEccccEEccEEEEccccccccccEEcccccEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEccccEEEEEEEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEccccEEEHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHEEEcccccccccccccEEEEEEEEEccccccccc

cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEccccccccccEEEEEEccccccccEEEEEEEEccHHHHcccEEEEEEEEEccccccccccccccccccccccEEEEEEEccccccccHHHHHHcccccccccccccEEcccccEEEEEEccccccccccccccHHHHHEcccccEEEEEEEcHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHcHHHHHHHHHHHHHHHHHHHcccccEEEEEccHEEEEEEHEEEcEEEEEEEEcccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHEEEEEEHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccc

MSILSHISLSKIVISVGLGFMIHSVWSIYklslppdcpvertclkssllrnpklELILFSsvkekptgrdVELILEKKKFDYNQAFEENiklnvpyktrmngtLFLHMFIIAhrpnqnwdwdslarhsnqYEIKvyrkvplskyalppdrtfhllseegpqqksrkpvtHIKSLIEFnmlidvhkfprleipfelynyfrisnnefLPIVAYNLLNDRNtflkevkpdtnemeiqfkyspisygkLRLMLHVEASFKSIaqmgfsdkeiddvksmfadTHLYVFLTTMVVSFVHLLFDFLAFKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEVWKLLKIFkfdsrswrfVRKTESAHERRTTAYDLEAMRYLSYILYPLCLATAVYSFVYSEHKSVYSWLLRSLVNAVYAFGFIFMLPQLfinyklksvahlpwrTFMYKAFNTFIDDVFAFLITMptmhrlacfrDDIIFLIYLYQrcfepaiip

MSILSHISLSKIVISVGLGFMIHSVWSIYKLSLPPDCPVERTClkssllrnpklelilfssvkekptgrdVELILEkkkfdynqafeeniklnvpykTRMNGTLFLHMFIIAHRPNQNWDWDSLARHSNQYEIKVYRKVPLSKYALPPDRTFHLLseegpqqksrkpvTHIKSLIEFNMLIDVHKFPRLEIPFELYNYFRISNNEFLPIVAYNLLNDRNTFLKevkpdtnemeiQFKYSPISYGKLRLMLHVEASFKSIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVSFVHLLFDFLAFKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEVWKLLKifkfdsrswrfvrktesaherrttaydlEAMRYLSYILYPLCLATAVYSFVYSEHKSVYSWLLRSLVNAVYAFGFIFMLPQLFINYKLKSVAHLPWRTFMYKAFNTFIDDVFAFLITMPTMHRLACFRDDIIFLIYLYQRCFEPAIIP

***LSHISLSKIVISVGLGFMIHSVWSIYKLSLPPDCPVERTCLKSSLLRNPKLELILFSSVKEKPTGRDVELILEKKKFDYNQAFEENIKLNVPYKTRMNGTLFLHMFIIAHRPNQNWDWDSLARHSNQYEIKVYRKVPLSKYALPPDRTFHL*************VTHIKSLIEFNMLIDVHKFPRLEIPFELYNYFRISNNEFLPIVAYNLLNDRNTFLKEVKPDTNEMEIQFKYSPISYGKLRLMLHVEASFKSIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVSFVHLLFDFLAFKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEVWKLLKIFKFDSRSWRFVRKTESAHERRTTAYDLEAMRYLSYILYPLCLATAVYSFVYSEHKSVYSWLLRSLVNAVYAFGFIFMLPQLFINYKLKSVAHLPWRTFMYKAFNTFIDDVFAFLITMPTMHRLACFRDDIIFLIYLYQRCFEPAI**

*****HISLSKIVISVGLGFMIHSVWSIYKLSLPPD******CLKSSLLRNPKLELILFSSVKEKPTGRDVELILEKKKFDYNQAFEENIKLNVPYKTRMNGTLFLHMFIIAHRPNQ*WD*DSLARHSNQYEIKVYRKVPLSK**************************HIKSLIEFNMLIDVHKFPRLEIPFELYNYFRISNNEFLPIVAYNLLNDRNTFLKEVKPDTNEMEIQFKYSPISYGKLRLMLHVE******************VKSMFADTHLYVFLTTMVVSFVHLLFDFLAFKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEVWKLLKIFKFDSRSWR**************AYDLEAMRYLSYILYPLCLATAVYSFVYSEHKSVYSWLLRSLVNAVYAFGFIFMLPQLFINYKLKSVAHLPWRTFMYKAFNTFIDDVFAFLITMPTMHRLACFRDDIIFLIYLYQRCFEPAIIP

MSILSHISLSKIVISVGLGFMIHSVWSIYKLSLPPDCPVERTCLKSSLLRNPKLELILFSSVKEKPTGRDVELILEKKKFDYNQAFEENIKLNVPYKTRMNGTLFLHMFIIAHRPNQNWDWDSLARHSNQYEIKVYRKVPLSKYALPPDRTFHLLSE**********VTHIKSLIEFNMLIDVHKFPRLEIPFELYNYFRISNNEFLPIVAYNLLNDRNTFLKEVKPDTNEMEIQFKYSPISYGKLRLMLHVEASFKSIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVSFVHLLFDFLAFKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEVWKLLKIFKFDSRSWRFVRKTESAHERRTTAYDLEAMRYLSYILYPLCLATAVYSFVYSEHKSVYSWLLRSLVNAVYAFGFIFMLPQLFINYKLKSVAHLPWRTFMYKAFNTFIDDVFAFLITMPTMHRLACFRDDIIFLIYLYQRCFEPAIIP

*SILSHISLSKIVISVGLGFMIHSVWSIYKLSLPPDCPVERTCLKSSLLRNPKLELILFSSVKEKPTGRDVELILEKKKFDYNQAFEENIKLNVPYKTRMNGTLFLHMFIIAHRPNQNWDWDSLARHSNQYEIKVYRKVPLSKYALPPDRTFHLLSEEGPQQKSRKPVTHIKSLIEFNMLIDVHKFPRLEIPFELYNYFRISNNEFLPIVAYNLLNDRNTFLKEVKPDTNEMEIQFKYSPISYGKLRLMLHVEASFKSIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVSFVHLLFDFLAFKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEVWKLLKIFKFDSRSWRFVRKTESAHERRTTAYDLEAMRYLSYILYPLCLATAVYSFVYSEHKSVYSWLLRSLVNAVYAFGFIFMLPQLFINYKLKSVAHLPWRTFMYKAFNTFIDDVFAFLITMPTMHRLACFRDDIIFLIYLYQRCFEPAIIP

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		511	2.2.26 [Sep-21-2011]
Q5ZKJ0		536	Cleft lip and palate tran	yes	N/A	0.964	0.919	0.416	1e-118
Q6DHU1		538	Cleft lip and palate tran	yes	N/A	0.953	0.905	0.431	1e-118
Q5R7B1		538	Cleft lip and palate tran	yes	N/A	0.925	0.879	0.429	1e-117
Q8BXA5		539	Cleft lip and palate tran	yes	N/A	0.925	0.877	0.426	1e-117
Q96KA5		538	Cleft lip and palate tran	yes	N/A	0.925	0.879	0.429	1e-117
A2VE61		538	Cleft lip and palate tran	yes	N/A	0.925	0.879	0.427	1e-115
Q54RJ1		619	CLPTM1-like membrane prot	yes	N/A	0.821	0.678	0.367	4e-76
O96005		669	Cleft lip and palate tran	no	N/A	0.812	0.620	0.358	2e-65
Q8VBZ3		664	Cleft lip and palate tran	no	N/A	0.812	0.625	0.358	3e-65
Q2NL17		670	Cleft lip and palate tran	no	N/A	0.806	0.614	0.347	4e-65

>sp\|Q5ZKJ0\|CLP1L_CHICK Cleft lip and palate transmembrane protein 1-like protein OS=Gallus gallus GN=CLPTM1L PE=2 SV=1	Back alignment and function desciption

 Score =  426 bits (1094), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/526 (41%), Positives = 325/526 (61%), Gaps = 33/526 (6%)

Query: 3   ILSHISLSKIVISVGLGFMIHSVWSIYKLSLPPDCPV--ERTCLKSSLLRNPKLELILFS 60
           +LS  S + + + V   ++ H+ W +Y +     CP      C+   L R PKL+L +++
Sbjct: 1   MLSRSSFTSLAVGVFAVYVAHTCWVMYGIVYTRPCPSGGAAACVWPYLARRPKLQLSVYT 60

Query: 61  SVKEKPTGR-DVELILEKKKFDYNQAFEENIKLNVPYKTRMNGTLFLHMFIIAHRPNQNW 119
           + +       +++L+L  + FD    FE  + ++VP KTR NGTL+ ++F+  H     W
Sbjct: 61  TTRSNIGAESNIDLVLNVEDFDIESKFERTVNVSVPKKTRNNGTLYAYIFL-HHAGVLPW 119

Query: 120 DWDSLARHSNQYEIKVYRKVPLSKYALPPDRTFHLLSEEGPQQKSR---------KPVTH 170
                  H  +   +V+   PL+ Y +P     +LL+ E   Q+           +PV+H
Sbjct: 120 -------HDGK---QVHIVSPLTTYMVPKPEEINLLTGESTTQQIEAEKQTSALDEPVSH 169

Query: 171 IKSLIEFNMLIDVHKFPRLEIPFELYNYFRI----SNNEFLPIVAYNLLNDRNTFLKEVK 226
            +S +  N++++   F    +P +++ Y ++        +LPI+  + L++R   L  + 
Sbjct: 170 WRSRLTLNVMVEDFVFDGSSLPADVHRYMKMVQLGKTVHYLPILFIDQLSNRVKDLMVIN 229

Query: 227 PDTNEMEIQFKYSPISYGKLRLMLHVEASFKSIAQMGFSDKEIDDVKSMFADTHLYVFLT 286
             T E+ +   Y  IS GKLR  +H++ +  S+ Q GFS+K+ D+VK +F DT+LY    
Sbjct: 230 RSTTELPLTVSYDKISLGKLRFWIHMQDAVYSLQQFGFSEKDADEVKGIFVDTNLYFLAL 289

Query: 287 TMVVSFVHLLFDFLAFKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLV 346
           T  V+  HLLFDFLAFKND+SFWK +++ +G+S ++V+WR FS +V+FL+LLDE TS LV
Sbjct: 290 TFFVAAFHLLFDFLAFKNDISFWKKKRSMIGMSTKAVLWRCFSTVVIFLFLLDEQTSLLV 349

Query: 347 LIPNGISGVIEVWKLLKIFKFDSRSWRFVR-----KTESAHERRTTAYDLEAMRYLSYIL 401
           LIP GI  VIE+WK+ K  K   + W+ +R        +  E++T  YD +AM+YLSY+L
Sbjct: 350 LIPAGIGAVIELWKVKKALKMTVK-WQGIRPKVQFGASNDSEKKTEEYDTQAMKYLSYLL 408

Query: 402 YPLCLATAVYSFVYSEHKSVYSWLLRSLVNAVYAFGFIFMLPQLFINYKLKSVAHLPWRT 461
           YPLC+  A YS +  ++KS YSWL+ S VN VYAFGF+FMLPQLF+NYK+KSVAHLPW+ 
Sbjct: 409 YPLCIGGAAYSLLNVKYKSWYSWLINSFVNGVYAFGFLFMLPQLFVNYKMKSVAHLPWKA 468

Query: 462 FMYKAFNTFIDDVFAFLITMPTMHRLACFRDDIIFLIYLYQRCFEP 507
           F YKAFNTFIDD+FAF+ITMPT HRLACFRDD++FL+YLYQR   P
Sbjct: 469 FTYKAFNTFIDDIFAFIITMPTSHRLACFRDDVVFLVYLYQRWLYP 514

May enhance cisplatin-mediated apoptosis, when overexpressed.
Gallus gallus (taxid: 9031)

>sp\|Q6DHU1\|CLP1L_DANRE Cleft lip and palate transmembrane protein 1-like protein OS=Danio rerio GN=clptm1l PE=2 SV=1	Back alignment and function description

>sp\|Q5R7B1\|CLP1L_PONAB Cleft lip and palate transmembrane protein 1-like protein OS=Pongo abelii GN=CLPTM1L PE=2 SV=1	Back alignment and function description

>sp\|Q8BXA5\|CLP1L_MOUSE Cleft lip and palate transmembrane protein 1-like protein OS=Mus musculus GN=Clptm1l PE=2 SV=1	Back alignment and function description

>sp\|Q96KA5\|CLP1L_HUMAN Cleft lip and palate transmembrane protein 1-like protein OS=Homo sapiens GN=CLPTM1L PE=1 SV=1	Back alignment and function description

>sp\|A2VE61\|CLP1L_BOVIN Cleft lip and palate transmembrane protein 1-like protein OS=Bos taurus GN=CLPTM1L PE=2 SV=1	Back alignment and function description

>sp\|Q54RJ1\|CNRB_DICDI CLPTM1-like membrane protein cnrB OS=Dictyostelium discoideum GN=cnrB PE=3 SV=1	Back alignment and function description

>sp\|O96005\|CLPT1_HUMAN Cleft lip and palate transmembrane protein 1 OS=Homo sapiens GN=CLPTM1 PE=1 SV=1	Back alignment and function description

>sp\|Q8VBZ3\|CLPT1_MOUSE Cleft lip and palate transmembrane protein 1 homolog OS=Mus musculus GN=Clptm1 PE=1 SV=1	Back alignment and function description

>sp\|Q2NL17\|CLPT1_BOVIN Cleft lip and palate transmembrane protein 1 homolog OS=Bos taurus GN=CLPTM1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		511
307169950		510	Cleft lip and palate transmembrane prote	0.962	0.964	0.489	1e-133
350406527		527	PREDICTED: cleft lip and palate transmem	0.941	0.912	0.482	1e-132
307198384		541	Cleft lip and palate transmembrane prote	0.968	0.914	0.477	1e-132
328791417		530	PREDICTED: cleft lip and palate transmem	0.945	0.911	0.496	1e-130
380015936		526	PREDICTED: LOW QUALITY PROTEIN: cleft li	0.939	0.912	0.491	1e-130
357615576		535	hypothetical protein KGM_01714 [Danaus p	0.972	0.928	0.470	1e-130
157115642		542	hypothetical protein AaeL_AAEL007309 [Ae	0.958	0.904	0.467	1e-130
345483175		548	PREDICTED: cleft lip and palate transmem	0.980	0.914	0.457	1e-129
383864622		528	PREDICTED: cleft lip and palate transmem	0.962	0.931	0.464	1e-128
340721483		529	PREDICTED: cleft lip and palate transmem	0.945	0.913	0.482	1e-128

>gi\|307169950\|gb\|EFN62459.1\| Cleft lip and palate transmembrane protein 1-like protein [Camponotus floridanus]	Back alignment and taxonomy information

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 249/509 (48%), Positives = 342/509 (67%), Gaps = 17/509 (3%)

Query: 8   SLSKIVISVGLGFMIHSVWSIYKLSLPPDCPVERTCLKSSLLRNPKLELILFSSVKEKPT 67
           SLS I+  + L ++++S++S+  L + P C   + CLKS L   P+L L ++SSVK  PT
Sbjct: 5   SLSVILSQIFLAYIVYSIYSLSLLFVSPVCEDGKPCLKSYLSERPQLNLYIYSSVKRNPT 64

Query: 68  GRDVELILEKKKFDYNQAFEENIKLNVPYKTRMNGTLFLHMFIIAHRPNQNWDWDSLARH 127
            RDV+L+   + F+YN+A      LN+P +TR NGTLFLH+ ++     Q+  +  L + 
Sbjct: 65  SRDVDLVYSAQNFNYNEAQIIPTILNIPRETRRNGTLFLHVLLVPTFTKQDRSFIDLQKD 124

Query: 128 SNQYEIKVYRKVPLSKYALPPDRTFHLLSEEGPQ-QKSRKP----VTHIKSLIEFNMLID 182
                   Y  + +++Y +P    F LL ++     K+ K     V+HIKS + F ++ D
Sbjct: 125 I----FTSYITIKMTQYMVPEAEAFKLLGKKDSSISKANKIAVHLVSHIKSRVTFTIMTD 180

Query: 183 VHKFPRLEIPFELYNYFRISNNE-FLPIVAYNLLNDRNTFLKEVKPDTNEMEIQFKYSPI 241
               P   +P EL N+ RI   + FLPIV Y+ L  R+  L+ +    N M +  +YSP+
Sbjct: 181 NIMLPAYSVPAELVNHIRIIGKQTFLPIVNYDFLQTRHRDLQRITLQNNTMNVTIEYSPV 240

Query: 242 SYGKLRLMLHVEASFKSIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVSFVHLLFDFLA 301
           S GKLRL+LHV+A+ +++  +GFSDK++D+VK +FADT++Y+   T  ++ +HLLFDFLA
Sbjct: 241 SLGKLRLVLHVQATMENLKNLGFSDKDVDEVKGIFADTNIYLLGGTFFIAAIHLLFDFLA 300

Query: 302 FKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEVWKL 361
            KNDVSFW+ + N +G+S  +VMWR FSQ V+FLYL DE++S LVLIP GI  +IE+WKL
Sbjct: 301 IKNDVSFWRKKSNLIGLSKWTVMWRAFSQTVIFLYLCDESSSLLVLIPTGIGTIIELWKL 360

Query: 362 LKIFKF-----DSRSWRFVRKTE--SAHERRTTAYDLEAMRYLSYILYPLCLATAVYSFV 414
            KI +      +S   R   KT+  +A E +T  +D E+MRYLSY+LYPL +  AVYS +
Sbjct: 361 KKISRVQLISSNSILPRIQFKTDDMNAAEVKTREFDAESMRYLSYLLYPLIIVGAVYSLL 420

Query: 415 YSEHKSVYSWLLRSLVNAVYAFGFIFMLPQLFINYKLKSVAHLPWRTFMYKAFNTFIDDV 474
           Y  HKS YSW + S+VN VYAFGF+FMLPQLF+NYKLKSVAHLPWR FMYKAFNTFIDDV
Sbjct: 421 YQPHKSWYSWSINSMVNGVYAFGFLFMLPQLFVNYKLKSVAHLPWRAFMYKAFNTFIDDV 480

Query: 475 FAFLITMPTMHRLACFRDDIIFLIYLYQR 503
           FAF+ITMPT HR+ACFRDD +FLIYLYQR
Sbjct: 481 FAFIITMPTAHRIACFRDDAVFLIYLYQR 509

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|350406527\|ref\|XP_003487801.1\| PREDICTED: cleft lip and palate transmembrane protein 1-like protein-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|307198384\|gb\|EFN79326.1\| Cleft lip and palate transmembrane protein 1-like protein [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|328791417\|ref\|XP_001122306.2\| PREDICTED: cleft lip and palate transmembrane protein 1-like protein-like [Apis mellifera]	Back alignment and taxonomy information

>gi\|380015936\|ref\|XP_003691950.1\| PREDICTED: LOW QUALITY PROTEIN: cleft lip and palate transmembrane protein 1-like protein-like [Apis florea]	Back alignment and taxonomy information

>gi\|357615576\|gb\|EHJ69733.1\| hypothetical protein KGM_01714 [Danaus plexippus]	Back alignment and taxonomy information

>gi\|157115642\|ref\|XP_001652638.1\| hypothetical protein AaeL_AAEL007309 [Aedes aegypti] gi\|108876785\|gb\|EAT41010.1\| AAEL007309-PA [Aedes aegypti]	Back alignment and taxonomy information

>gi\|345483175\|ref\|XP_001606283.2\| PREDICTED: cleft lip and palate transmembrane protein 1-like protein-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|383864622\|ref\|XP_003707777.1\| PREDICTED: cleft lip and palate transmembrane protein 1-like protein-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|340721483\|ref\|XP_003399149.1\| PREDICTED: cleft lip and palate transmembrane protein 1-like protein-like [Bombus terrestris]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		511
MGI\|MGI:2442892		539	Clptm1l "CLPTM1-like" [Mus mus	0.972	0.922	0.421	7.6e-112
UNIPROTKB\|Q96KA5		538	CLPTM1L "Cleft lip and palate	0.972	0.923	0.424	1.2e-111
ZFIN\|ZDB-GENE-040718-75		538	clptm1l "cleft lip and palate	0.970	0.921	0.428	2e-111
UNIPROTKB\|A2VE61		538	CLPTM1L "Cleft lip and palate	0.970	0.921	0.427	2.6e-111
UNIPROTKB\|Q5ZKJ0		536	CLPTM1L "Cleft lip and palate	0.978	0.932	0.420	6.1e-110
WB\|WBGene00011761		566	T13H5.8 [Caenorhabditis elegan	0.953	0.860	0.385	1.2e-95
TAIR\|locus:2159592		590	AT5G08500 "AT5G08500" [Arabido	0.677	0.586	0.423	1.4e-76
DICTYBASE\|DDB_G0283115		619	cnrB "putative cell number reg	0.831	0.686	0.373	4e-74
TAIR\|locus:504954879		593	AT5G23575 "AT5G23575" [Arabido	0.669	0.576	0.420	4.2e-71
WB\|WBGene00011302		618	R166.2 [Caenorhabditis elegans	0.727	0.601	0.375	4.1e-65

MGI\|MGI:2442892 Clptm1l "CLPTM1-like" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 216/512 (42%), Positives = 322/512 (62%)

Query:     8 SLSKIVISVGLGFMIHSVWSIYKLSLPPDCPVERTCLKSSLLRNPKLELILFSSVKEK-P 66
             S + +V+ V L +++H+ W +Y +     C  +  C++  L   PKL+L ++++ +    
Sbjct:     7 SFTSLVVGVFLVYVVHTCWVMYGIVYTRPCSGDSNCIQPYLALRPKLQLSVYTTTRSSLG 66

Query:    67 TGRDVELILEKKKFDYNQAFEENIKLNVPYKTRMNGTLFLHMFIIAHRPNQNWDWDSLAR 126
                +V+LIL  + FD +  FE  + ++VP KTR NGTL+ ++F+  H     W  D    
Sbjct:    67 AENNVDLILNVEDFDVDSKFERTVNVSVPKKTRNNGTLYAYIFL-HHAGILPWQ-DGKQV 124

Query:   127 H--SNQYEIKVYRKVPLSKYALPPDRTFHLLSEEGPQQKSRKPVTHIKSLIEFNMLIDVH 184
             H  S      + +   ++           + +E+ P     +PV+H +  +  N+++D  
Sbjct:   125 HVVSTLTTYMIPKPEEINLLTGESATQQQIEAEKKPSNALDEPVSHWRPRLTLNVMVDDF 184

Query:   185 KFPRLEIPFELYNYFRI----SNNEFLPIVAYNLLNDRNTFLKEVKPDTNEMEIQFKYSP 240
              F    +P +++ Y ++        +LPI+  + L++R   L  +   T E+ +   Y  
Sbjct:   185 VFDGSSLPADVHRYMKMIQLGKTVHYLPILFIDQLSNRVKDLMVINRSTTELPLTVSYDK 244

Query:   241 ISYGKLRLMLHVEASFKSIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVSFVHLLFDFL 300
             IS G+LR  +H++ +  S+ Q GFS+K+ D++K +F DT+LY+   T  V+  HLLFDFL
Sbjct:   245 ISLGRLRFWIHMQDAVYSLQQFGFSEKDADELKGIFVDTNLYLLALTFFVAAFHLLFDFL 304

Query:   301 AFKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEVWK 360
             AFK+D+SFWK +K+ +G+S ++V+WR FS +V+FL+LLDE TS LVLIP G+   IE+WK
Sbjct:   305 AFKSDISFWKKKKSMIGMSTKAVLWRCFSTVVIFLFLLDEQTSLLVLIPAGVGAAIELWK 364

Query:   361 LLKIFKFDSRSWRFVRK-----TESAHERRTTAYDLEAMRYLSYILYPLCLATAVYSFVY 415
             + K  K  + +WR +R      T S  ER+T  YD +AM+YLSY+LYPLC+  AVYS + 
Sbjct:   365 VKKALKI-TVAWRGLRPVFQFGTHSESERKTEKYDAQAMKYLSYLLYPLCVGGAVYSLLN 423

Query:   416 SEHKSVYSWLLRSLVNAVYAFGFIFMLPQLFINYKLKSVAHLPWRTFMYKAFNTFIDDVF 475
              ++KS YSWL+ S VN VYAFGF+FMLPQLF+NYK+KSVAHLPW+ F YKAFNTFIDDVF
Sbjct:   424 IKYKSWYSWLINSFVNGVYAFGFLFMLPQLFVNYKMKSVAHLPWKAFTYKAFNTFIDDVF 483

Query:   476 AFLITMPTMHRLACFRDDIIFLIYLYQRCFEP 507
             AF+ITMPT HRLACFRDD++FL+YLYQR   P
Sbjct:   484 AFIITMPTSHRLACFRDDVVFLVYLYQRWLYP 515

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006915 "apoptotic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB\|Q96KA5 CLPTM1L "Cleft lip and palate transmembrane protein 1-like protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040718-75 clptm1l "cleft lip and palate associated transmembrane protein 1, like" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|A2VE61 CLPTM1L "Cleft lip and palate transmembrane protein 1-like protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZKJ0 CLPTM1L "Cleft lip and palate transmembrane protein 1-like protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

WB\|WBGene00011761 T13H5.8 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

TAIR\|locus:2159592 AT5G08500 "AT5G08500" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0283115 cnrB "putative cell number regulator" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

TAIR\|locus:504954879 AT5G23575 "AT5G23575" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

WB\|WBGene00011302 R166.2 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R7B1	CLP1L_PONAB	No assigned EC number	0.4297	0.9256	0.8791	yes	N/A
Q8BXA5	CLP1L_MOUSE	No assigned EC number	0.4268	0.9256	0.8775	yes	N/A
Q54RJ1	CNRB_DICDI	No assigned EC number	0.3677	0.8219	0.6785	yes	N/A
A2VE61	CLP1L_BOVIN	No assigned EC number	0.4277	0.9256	0.8791	yes	N/A
Q5ZKJ0	CLP1L_CHICK	No assigned EC number	0.4163	0.9647	0.9197	yes	N/A
Q96KA5	CLP1L_HUMAN	No assigned EC number	0.4297	0.9256	0.8791	yes	N/A
Q6DHU1	CLP1L_DANRE	No assigned EC number	0.4310	0.9530	0.9052	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		511
pfam05602		437	pfam05602, CLPTM1, Cleft lip and palate transmembr	2e-96

>gnl\|CDD\|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1 (CLPTM1)	Back alignment and domain information

 Score =  298 bits (765), Expect = 2e-96
 Identities = 123/430 (28%), Positives = 208/430 (48%), Gaps = 40/430 (9%)

Query: 21  MIHSVWSIYKLSLPPDCPVERT------------CLKSSLLRNPKLELILFSSVKEKPTG 68
           +  +V  +  L   P C V +               +        L+L +++S  + P  
Sbjct: 13  IFVAVQYLMSLFFGPPCTVAQNNGKSVQVSSVPQSYRPLWPNGELLDLSVYTSPSDNPPS 72

Query: 69  -RDVELILEKKKFDYNQAF---EENIKLNVPYKTRMNGTLFLHMFIIAHRPNQNWDWDSL 124
              ++L+  ++ FDY   F   E  + + +P + + NG+L+LH+++       + D    
Sbjct: 73  LSSLDLVWSEENFDYGNWFDRREITLTITIPKEVQNNGSLYLHVYL--GLSGYSLDPTDK 130

Query: 125 ARHSNQYEIKVYRKVPLSKYALPP-DRTFHLLSEEGPQQK--------SRKPVTHIKSLI 175
              S +    V+   PL+ Y      +  +LL  +  +++          K V+H    +
Sbjct: 131 GYDSGK---AVHFVFPLTTYLPKKKVKKKNLLGGKSEKEEPEEEKTPAPDKIVSHWHPNL 187

Query: 176 EFNMLIDVHKFPRLEIPFELYNYFRISN---NEFLPIVAYNLLNDRNTFLKEVKPDTNEM 232
             ++++D   F   +IP  +  Y R+       + PI+  N      + L E+      +
Sbjct: 188 TLSVVVDFGVFSLNQIPPAIARYLRVEPSGARWYYPILFVNEFWQLKSHLIEINETVKTL 247

Query: 233 EIQFKYSPISYGKLRLMLHVEASFKSIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVSF 292
            +    SP+S  K +L   +E S K  A++GF  KE D+VK +  DT+ Y+   T +VS 
Sbjct: 248 PLNITLSPLSLWKFQLYASMEQSMKQQARLGFDGKEADEVKEILLDTNPYLLALTAIVSL 307

Query: 293 VHLLFDFLAFKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGI 352
           +H++F+FLAFKND+ FW+N+K+ VG+SVRS++   F QI++FLYLLD  TS+++L+  GI
Sbjct: 308 LHMVFEFLAFKNDIQFWRNKKSMVGLSVRSILANVFCQIIIFLYLLDNETSWMILVSQGI 367

Query: 353 SGVIEVWKLLKIFKF----DSRSWRFV---RKTESAHERRTTAYDLEAMRYLSYILYPLC 405
             +IE WK+ K  K                +   S +E +T  YD  A +YLSY L PL 
Sbjct: 368 GLLIEAWKITKAVKVRIRWRGFIPYIEFEDKGKLSEYESKTKEYDDIAFKYLSYALVPLL 427

Query: 406 LATAVYSFVY 415
           +A AVYS +Y
Sbjct: 428 VAYAVYSLLY 437

This family consists of several eukaryotic cleft lip and palate transmembrane protein 1 sequences. Cleft lip with or without cleft palate is a common birth defect that is genetically complex. The nonsyndromic forms have been studied genetically using linkage and candidate-gene association studies with only partial success in defining the loci responsible for orofacial clefting. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family. This family also contains the human cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis. Length = 437

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		511
KOG2489\|consensus		592		100.0
PF05602		438	CLPTM1: Cleft lip and palate transmembrane protein	100.0
PF04193		61	PQ-loop: PQ loop repeat	94.24

>KOG2489\|consensus	Back alignment and domain information

Probab=100.00  E-value=1e-190  Score=1473.86  Aligned_cols=502  Identities=41%  Similarity=0.721  Sum_probs=476.0

Q ss_pred             cccchHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCccccc---cccCCCceEEEEEEeCCCCCC--CCCcceeeeec
Q psy5313           4 LSHISLSKIVISVGLGFMIHSVWSIYKLSLPPDCPVERTCLKS---SLLRNPKLELILFSSVKEKPT--GRDVELILEKK   78 (511)
Q Consensus         4 ~~~~s~t~i~~~iFl~Yi~~~iy~i~~lf~~~~c~~~~~c~~p---~~~~~~~LdL~VY~S~~~~~~--~~~~~lv~~~~   78 (511)
                      +.|.+++.+++.+|++|+++++|.+++.+.+++|++..+|..|   .+++|+.+||+||+|+++.++  -++..++|+.+
T Consensus        20 ~~~~~i~~~i~~~fi~y~~s~ff~~~~~~~~~~~~~~~~~~~~~~n~fp~g~~~dL~vy~s~~~~~~~~f~~~~li~~~~   99 (592)
T KOG2489|consen   20 GFFQMIKGLISIAFISYMVSSFFRMSQLPTDRSCSGAAGCYQPALNLFPKGTLLDLHVYLSESRSPFNTFNNIALIWNVK   99 (592)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCccCCcCchhhcCCCCCeEEEEEEeccChhhhhccchhhhhheec
Confidence            4689999999999999999999999999999999876788766   566777799999999998852  22348999999


Q ss_pred             CCCC-----CcceEEEEEEecCccccccceEEEEEEEeecCCCCCCCchhhhhccCcccceEEEEEecccccCCCc-ccc
Q psy5313          79 KFDY-----NQAFEENIKLNVPYKTRMNGTLFLHMFIIAHRPNQNWDWDSLARHSNQYEIKVYRKVPLSKYALPPD-RTF  152 (511)
Q Consensus        79 ~f~y-----~~~~~~~~~v~iP~~~~nNgtly~hv~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~Lt~y~vpk~-k~~  152 (511)
                      +++|     +++++++.++++|++++||||||+|+|+ .++|.+|++.++    .+++..++|.++||++|++|+. |++
T Consensus       100 ~l~y~dw~~d~~~~~~~~~~~p~~l~~NgslYlH~fl-~~~G~~~d~~~~----~~~~~~~v~~~~~l~~y~~~r~~kt~  174 (592)
T KOG2489|consen  100 DLDYGDWTPDGSFEHDLNVKTPESLRNNGSLYLHVFL-AKAGQSPDPRDP----YYRDGKTVHLVHPLNKYKKPRAAKTF  174 (592)
T ss_pred             CcccccccCCCceEEeeecCCcHHHhcCCeEEEEEEe-eccCCCCCccch----hhccCceEEEEeehhhhcccchhhhh
Confidence            9999     8999999999999999999999999999 789988887762    5678899999999999999986 899


Q ss_pred             cCCCCCCCCc----------ccCcccceeecceEEEEeeccCcccCCCCChhhhcceeec--cceeeceEeechhhhccc
Q psy5313         153 HLLSEEGPQQ----------KSRKPVTHIKSLIEFNMLIDVHKFPRLEIPFELYNYFRIS--NNEFLPIVAYNLLNDRNT  220 (511)
Q Consensus       153 nLL~~~~~~~----------~~~~~vshw~pnlti~~v~d~~~~~~~~iP~~~~~~i~~~--~~~y~Pi~~~n~~w~~~~  220 (511)
                      |||+|+++.+          ...|+++|||||++||+|+|++.|+++++||++++++.+.  ++.|+||+++|++|+|++
T Consensus       175 nLL~~e~e~~~~E~~kKa~~~~~e~~shw~pnl~vnlv~D~~~~~k~~vPp~l~~~~~~~~~~~~YlPIlf~n~~wnl~k  254 (592)
T KOG2489|consen  175 NLLTGESETQVDEKLKKAESKKVEPVSHWRPNLTVNLVDDHTRWVKGSVPPPLAPYLIFLPKGEHYLPILFFNEYWNLQK  254 (592)
T ss_pred             hhccCcchhcchhhhccchhccccchhcccCCceEEEeecCcccccCCCCCccchhheecCCCCceeeeEEechhhhhhc
Confidence            9999998832          2348999999999999999999999999999999999988  567999999999999999


Q ss_pred             ceeeeCCCcceeEEEEEEeecchhHHHHHHHHHHHHHHHHHcCCCchhhhhHHhHhhccchhHHHHHHHHHHHHHHHHHh
Q psy5313         221 FLKEVKPDTNEMEIQFKYSPISYGKLRLMLHVEASFKSIAQMGFSDKEIDDVKSMFADTHLYVFLTTMVVSFVHLLFDFL  300 (511)
Q Consensus       221 ~l~~in~t~~~l~l~i~~~p~s~~k~~l~~~~~~~~~~~~~~g~~~~d~D~iK~~~~etn~ylL~~T~~vs~lH~vFefL  300 (511)
                      ||+|||+|++++||+++|+|+|++|||||++++++.+.++++|+.+||.||+|++|+||||||||+|++||+||+|||||
T Consensus       255 dl~pInet~~el~Ltv~y~P~sv~K~ql~~~~~~~~q~~~~~g~~~kd~DEvK~~fleTN~yLL~vT~fVS~lH~vFdfL  334 (592)
T KOG2489|consen  255 DLMPINETTKELPLTVTYYPLSVFKLQLYASQQMASQWLQSFGFMEKDSDEVKGAFLETNPYLLAVTIFVSILHSVFDFL  334 (592)
T ss_pred             ceEEccccccceeeEEEEEechHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHhcCchhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhhhccCCCccccchhhHHHHhhhheeeeeeeecCCcceEEEeccccceeeeeeeeeEEEEEEe------ccccc
Q psy5313         301 AFKNDVSFWKNRKNTVGISVRSVMWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEVWKLLKIFKFDS------RSWRF  374 (511)
Q Consensus       301 AFKnDi~fWr~~k~~~GlS~rtv~~~~~~q~iIfLYL~D~~TS~lil~~~gig~lie~WKi~K~~~~~~------~~~~p  374 (511)
                      ||||||||||+||||||||+|||+||||||+||||||+|||||+||++|+|+|++||+|||+|++++++      .|.+|
T Consensus       335 AFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYllDneTs~mVlvs~gvG~~IE~WKi~K~m~v~id~~g~i~gv~p  414 (592)
T KOG2489|consen  335 AFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYLLDNETSFMVLVSVGVGLLIELWKIKKAMKVEIDWSGLIPGVLP  414 (592)
T ss_pred             HhcchHHHhccccccccccHHHHHHHHHHHHhhhheeecCCccEEEEEeccceeeeeeeecceEEEEEEecccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999      36667


Q ss_pred             c--c-cCcchhhhhhhhhHHHHHHHHHHHHhHhhhhhhheeeeeccccceeeeehhhhhhhhhhhhhhhcccceeeeeec
Q psy5313         375 V--R-KTESAHERRTTAYDLEAMRYLSYILYPLCLATAVYSFVYSEHKSVYSWLLRSLVNAVYAFGFIFMLPQLFINYKL  451 (511)
Q Consensus       375 ~--~-~~~s~~e~~T~eyD~~A~kYLs~~l~Pl~~gyaiYSL~Y~~hksWYSw~i~sl~~~vY~FGFi~M~PQLfINYKL  451 (511)
                      |  | ++.++.|++|++||++|||||||+|+|||+|||||||+|.||||||||+++||+|||||||||+|||||||||||
T Consensus       415 Rl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKL  494 (592)
T KOG2489|consen  415 RLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKL  494 (592)
T ss_pred             cccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhh
Confidence            7  4 889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCchHHHHHhhhhhhhhhhhhhhhccccchhhhccccceeeeeeeehhccccccC
Q psy5313         452 KSVAHLPWRTFMYKAFNTFIDDVFAFLITMPTMHRLACFRDDIIFLIYLYQRCFEPAII  510 (511)
Q Consensus       452 KSVAhlPwr~~~YK~lNTfIDDlFAFvI~MP~~HRlacfRDDiVF~IyLYQrwiY~V~~  510 (511)
                      |||||||||||||||+||||||+||||||||||||+|||||||||+|||||||+||||-
T Consensus       495 KSVAHLPWR~~tYKa~NTFIDDlFAFVIkMPt~hRl~CfRDDIVFlIYLYQRWlYpVD~  553 (592)
T KOG2489|consen  495 KSVAHLPWRAFTYKAFNTFIDDLFAFVIKMPTLHRLACFRDDIVFLIYLYQRWLYPVDK  553 (592)
T ss_pred             hhhhcCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccceEEEeeehhhhccccCh
Confidence            99999999999999999999999999999999999999999999999999999999993

>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects	Back alignment and domain information

>PF04193 PQ-loop: PQ loop repeat	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		511
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 77/565 (13%), Positives = 160/565 (28%), Gaps = 170/565 (30%)

Query: 47  SLLRNPKLELILFSSVKEKPTGRDVELILEKKKFDYNQAFEENIKLNVPYKTRMNGTLFL 106
           S+L   +++ I+ S      T R    +L K++    +  EE                  
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE------------------ 85

Query: 107 HMFIIAHRPNQNWDWDSLARHSNQYEIKVYRKVPLSKYALPPDRTFHLLSEEGPQQKSR- 165
                  R N  +    +     Q        +    Y    DR ++          SR 
Sbjct: 86  -----VLRINYKFLMSPIKTEQRQ------PSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 166 KPVTHIKS-LIEFN---------ML--------IDVHKFPRLE--IPFELYNYFRISNNE 205
           +P   ++  L+E           +L        +DV    +++  + F+++ +  + N  
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCN 193

Query: 206 FLPIVAYNLLNDRNTFLKEVKPDTNEME-----IQFKYSPISYGKLRLML---HVEA--- 254
                   +L      L ++ P+          I+ +   I     RL+    +      
Sbjct: 194 ----SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 255 -----SFKSIAQMGFS--------DKEIDDVKSMFADTHLYVFLTTMVVSFVH-----LL 296
                + K+      S         K++ D  S    TH  + L    ++        LL
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLL 307

Query: 297 FDFL------------------------AFKNDVSFWKNRK--------NTVGISVRSV- 323
             +L                        + ++ ++ W N K          +  S+  + 
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 324 ---MWRTFSQIVVFLYLLDENTSYLVLIPNGISGVIEV-WKLLKIFKFDSRSWRFVRKT- 378
                + F ++ VF      +      IP   + ++ + W  +          +  + + 
Sbjct: 368 PAEYRKMFDRLSVF----PPS----AHIP---TILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 379 --ESAHERRTTAYDLEAMRYLSYILYPLCLATAVYSFV--YSEHKSVYSWLLRSLVNAVY 434
             +   E   +   +    YL   +          S V  Y+  K+  S  L       Y
Sbjct: 417 VEKQPKESTISIPSI----YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 435 AFGFI-------------FMLPQLFINY-----KLKSVAHLPWRTFMYKAFNTFID-DVF 475
            +  I              +   +F+++     K++  +   W        NT      +
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS-TAWNASGS-ILNTLQQLKFY 530

Query: 476 AFLITM--PTMHRLACFRDDII-FL 497
              I    P   RL    + I+ FL
Sbjct: 531 KPYICDNDPKYERLV---NAILDFL 552

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00