Psyllid ID: psy5322

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470------

MNKRGRQVVDIARYFHHLDNDATIAALERRVENGDSIFDNVDAGVWFRDCHTEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLEKMDLARDVTILHQTSHPLTTSDGETFNLGVTLRPTGPRYCILQLNDVADHRVKLVTSVPVRWKFHPGYMHTFAMTPHYFIIVEQPLSISVPRLIKNSVTNRPLATCLKFFEKQSNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRPYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPHERKDA

cccccccEEEEHHHcccccccHHHHHHHccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEcccccccccccccccccccccEEEEEEEccEEEEEEEEcccHHHHHHHHcccccEEccccccccccHHHHHHHHHHcccccccccEEEEEEEccEEEEEEEcccEEEEccccccEEEEccccccccccccccccEEcccccEEEEEEEccccccEEEEEEEcccccccEEEEEEEccccccccccEEEEEEcccEEEEEEccccccHHHHHHcccccccccccEEEEEccccEEEcccccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEEEEccccccccccEEEEEcccccEEEEccccccccccEEEEcccccccccEEEEEEEEEcccccEEEEEEEEccccccccEEEEEccccccccccccccccccccc

ccHHHHHHHHHHHHHHHHcccccEcccccccccccccccccccccEEcccccccccccccEEEEEcccHcccEEEEcccccccccccccccccccccEEEEEEEcccEEEEEEEEEEcHHHHHHHHcccEEEcccccccccccHHHHHHHHHHHHccccccccEEEEEEcccEEEEEcccccEEEccccccccccEccccccccccccccccccccccEEEEccccccccEEEEEEEccccccccEEEEEEEcccccccccEEEccEEcccEEEEccccEEEcHHHHHccccccccccccEEEEEccccEEEEccccccccEEEEEEEEcccccccccccEEccHHHcccccccccccHcHcccccEEEEEEEccccccccccEEEEEEccccEEEEEcccccccccEEEcccccccccccEEEEEEEEcccccccEEEEEEccccccccEEEEEccccccccccEEEEcHHHHcc

mnkrgrqvVDIARYFHHLDNDATIAALERRVengdsifdnvdagvwfrdchtevdqpvqgtvegvipswidgvlirngpgswnvgeesfdhlfdcsgllhrfkissGLVTyqckfiksesyiKNHAARRIVVTgfgtrfvpdpcaSIFQRIATlfkpgsdntlvsvypiqdqvyalgdsnymhridpatldtlekmdlardvtilhqtshplttsdgetfnlgvtlrptgprycilqlndvADHRVKLVTsvpvrwkfhpgymhtfamtphyfiiveqplsisvprliknsvtnrplaTCLKFFekqsnihstprYAQMFRArplrfrldlasprtaptgkvrpsvicdvgcetprmngqhqgrpytYFYAIsadidrdnpgtlIKVNVqnntckswsqkdvypsepvfvatpnavkedEGVLLSVLLWSHHPTRVSLLVLNARTMqelgrvnfttptpvpkclhgwyfpherkda

MNKRGRQVVDIARYFHHLDNDATIAALERRVENGDSIFDNVDAGVWFRDCHTEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLEKMDLARDVTILHqtshplttsdgetfNLGVTLRPTGPRYCILQLNDVADHRVKLVTSVPVRWKFHPGYMHTFAMTPHYFIIVEQPLSISVPRLIKNSVTNRPLATCLKFFekqsnihstprYAQMFRARPLRFRLDLasprtaptgkvrpsviCDVGCETprmngqhqgrPYTYFYAISADIDRDNPGTLIKVNVQNNTCKswsqkdvypsepVFVATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGrvnfttptpvpkclhgwyfpherkda

*******VVDIARYFHHLDNDATIAALERRVENGDSIFDNVDAGVWFRDCHTEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLEKMDLARDVTILHQTSHPLTTSDGETFNLGVTLRPTGPRYCILQLNDVADHRVKLVTSVPVRWKFHPGYMHTFAMTPHYFIIVEQPLSISVPRLIKNSVTNRPLATCLKFFEKQSNIHSTPRYAQMFRARPLRFRLDLAS******GKVRPSVICDVGCETPRMNGQHQGRPYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFP******

****************************************VDAGVWFRDCHTEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLEKMDLARDVTILHQTSHPLTTSDGETFNLGVTLRPTGPRYCILQLNDVADHRVKLVTSVPVRWKFHPGYMHTFAMTPHYFIIVEQPLSISVPRLIKNSVTNRPLATCLKFFEKQSNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRPYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFP**RK**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		476	2.2.26 [Sep-21-2011]
Q8AXN9		533	Retinoid isomerohydrolase	N/A	N/A	0.5	0.446	0.388	3e-48
Q9YI25		533	Retinoid isomerohydrolase	N/A	N/A	0.5	0.446	0.384	2e-46
A9C3R8		532	Retinal Mueller cells iso	no	N/A	0.506	0.453	0.362	2e-46
Q6PBW5		531	Retinoid isomerohydrolase	no	N/A	0.495	0.444	0.391	3e-46
Q9YGX2		533	Retinoid isomerohydrolase	no	N/A	0.5	0.446	0.368	2e-45
A9C3R9		532	All-trans-retinyl ester 1	no	N/A	0.506	0.453	0.342	4e-45
Q91ZQ5		533	Retinoid isomerohydrolase	yes	N/A	0.5	0.446	0.364	1e-44
Q9TVB8		533	Retinoid isomerohydrolase	yes	N/A	0.5	0.446	0.364	2e-44
Q16518		533	Retinoid isomerohydrolase	yes	N/A	0.5	0.446	0.364	3e-44
O70276		533	Retinoid isomerohydrolase	no	N/A	0.5	0.446	0.364	3e-44

>sp\|Q8AXN9\|RPE65_CYNPY Retinoid isomerohydrolase OS=Cynops pyrrhogaster GN=RPE65 PE=2 SV=3	Back alignment and function desciption

 Score =  193 bits (490), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/247 (38%), Positives = 152/247 (61%), Gaps = 9/247 (3%)

Query: 53  EVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQ 112
           E+  P+   V G IP W+ G L+R GPG + VG E F HLFD   LLH+F    G VTY 
Sbjct: 21  ELASPITAHVTGRIPVWLTGSLLRCGPGLFEVGSEQFYHLFDGQALLHKFDFKEGHVTYH 80

Query: 113 CKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFK--PGSDNTLVSVYPIQ 170
            +FI++++Y++    +RIV+T FGT   PDPC +IF R  + F+    +DNTLV+VYP+ 
Sbjct: 81  RRFIRTDTYVRAMTEKRIVITEFGTFAFPDPCKNIFSRFLSYFQGLEVTDNTLVNVYPVG 140

Query: 171 DQVYALGDSNYMHRIDPATLDTLEKMDLARDVTILHQTSHPLTTSDGETFNLGVTL-RPT 229
           +  YA  ++NY+ +++P TL+T++K+DL   V+I   T+HPL  +DG  +N+G    +  
Sbjct: 141 EDYYACTETNYITKVNPETLETIKKVDLCNYVSINGVTAHPLIENDGTVYNIGNCFGKHF 200

Query: 230 GPRYCILQL----NDVAD--HRVKLVTSVPVRWKFHPGYMHTFAMTPHYFIIVEQPLSIS 283
              Y I+++     D  D  ++ K+V   P   +F P Y+H+F +TP+Y + VEQP+ I+
Sbjct: 201 SFAYNIVKIPPLQEDKEDPINKAKVVVQFPCSERFKPSYVHSFGLTPNYIVFVEQPVKIN 260

Query: 284 VPRLIKN 290
           + + + +
Sbjct: 261 LFKFLSS 267

Plays important roles in the production of 11-cis retinal and in visual pigment regeneration. The soluble form binds vitamin A (all-trans-retinol), making it available for LRAT processing to all-trans-retinyl ester. The membrane form, palmitoylated by LRAT, binds all-trans-retinyl esters, making them available for IMH (isomerohydrolase) processing to all-cis-retinol. The soluble form is regenerated by transferring its palmitoyl groups onto 11-cis-retinol, a reaction catalyzed by LRAT. The enzymatic activity is linearly dependent of the expression levels and membrane association.
Cynops pyrrhogaster (taxid: 8330)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 4

>sp\|Q9YI25\|RPE65_AMBTI Retinoid isomerohydrolase OS=Ambystoma tigrinum GN=RPE65 PE=2 SV=3	Back alignment and function description

>sp\|A9C3R8\|RP65C_DANRE Retinal Mueller cells isomerohydrolase OS=Danio rerio GN=rpe65c PE=1 SV=1	Back alignment and function description

>sp\|Q6PBW5\|RP65A_DANRE Retinoid isomerohydrolase OS=Danio rerio GN=rpe65a PE=2 SV=1	Back alignment and function description

>sp\|Q9YGX2\|RPE65_CHICK Retinoid isomerohydrolase OS=Gallus gallus GN=RPE65 PE=1 SV=1	Back alignment and function description

>sp\|A9C3R9\|RP65B_DANRE All-trans-retinyl ester 13-cis isomerohydrolase OS=Danio rerio GN=rpe65b PE=1 SV=1	Back alignment and function description

>sp\|Q91ZQ5\|RPE65_MOUSE Retinoid isomerohydrolase OS=Mus musculus GN=Rpe65 PE=1 SV=3	Back alignment and function description

>sp\|Q9TVB8\|RPE65_CANFA Retinoid isomerohydrolase OS=Canis familiaris GN=RPE65 PE=1 SV=3	Back alignment and function description

>sp\|Q16518\|RPE65_HUMAN Retinoid isomerohydrolase OS=Homo sapiens GN=RPE65 PE=1 SV=3	Back alignment and function description

>sp\|O70276\|RPE65_RAT Retinoid isomerohydrolase OS=Rattus norvegicus GN=Rpe65 PE=2 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		476
384402276		511	predicted carotinoid oxygenase [Bombyx m	0.909	0.847	0.422	1e-116
170029741		725	beta,beta-carotene 15,15'-monooxygenase	0.943	0.619	0.384	1e-107
384402278		474	predicted carotinoid oxygenase [Bombyx m	0.831	0.835	0.378	4e-96
357615480		504	neither inactivation nor afterpotential	0.899	0.849	0.358	4e-86
158297012		720	AGAP008143-PA [Anopheles gambiae str. PE	0.573	0.379	0.523	7e-84
157135394		712	beta-carotene dioxygenase [Aedes aegypti	0.567	0.379	0.518	5e-81
345495227		646	PREDICTED: beta,beta-carotene 9',10'-oxy	0.588	0.433	0.469	4e-77
195109402		615	GI23158 [Drosophila mojavensis] gi\|19391	0.588	0.455	0.472	6e-77
383854575		640	PREDICTED: beta,beta-carotene 15,15'-mon	0.617	0.459	0.467	1e-76
350397676		643	PREDICTED: beta,beta-carotene 9',10'-oxy	0.596	0.441	0.465	3e-76

>gi\|384402276\|gb\|AFH88673.1\| predicted carotinoid oxygenase [Bombyx mori]	Back alignment and taxonomy information

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/504 (42%), Positives = 301/504 (59%), Gaps = 71/504 (14%)

Query: 36  SIFDNVDAGVWFRDCHTEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDC 95
           +++ N D+ VW R C  EV +P+ G + G +P W+ G L+RNGPGS  VG   F HLFD 
Sbjct: 7   NLYPNCDSSVWLRSCEEEVTEPLDGNITGTLPPWLRGTLLRNGPGSLKVGAMRFKHLFDS 66

Query: 96  SGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLF 155
           S LLHRF I  G+VTYQC+F+KS +  KN AA RIVVT FGT+ V DPC +IF R+A +F
Sbjct: 67  SALLHRFAIHDGIVTYQCQFLKSNTLKKNRAANRIVVTEFGTKSVHDPCHTIFDRVAAIF 126

Query: 156 KPG---SDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLEKMDLARDVTILHQTSHPL 212
           KPG   SDN ++S+YP  D++YA  +   +HRIDP TLDTL++ ++   + +++ TSHP 
Sbjct: 127 KPGDSMSDNAMISLYPFGDEIYAFTEGPIIHRIDPVTLDTLDRKNMTDCIALVNHTSHPH 186

Query: 213 TTSDGETFNLGVTLRPTGPRYCILQL--NDVAD--HRVKLVTSVPVRWKFHPGYMHTFAM 268
              +G+ +N+G+++   G R+ +++    +  D   R K+V S+  RW  HP YMHTF +
Sbjct: 187 VMPNGDVYNVGMSIVKGGLRHVVVKFPYTEKGDMFERAKVVASLKPRWPLHPAYMHTFGI 246

Query: 269 TPHYFIIVEQPLSISVPRLIKNSVTNRPLATCLKF------------------------- 303
           T ++FIIVEQP+S+S+  +++N + N+PLA+ L +                         
Sbjct: 247 TENFFIIVEQPMSVSLCGVVRNQLANKPLASSLHWYPNHETNIVLLSRKDGKEWKRYRTQ 306

Query: 304 ----------FEKQSNI------------------------HSTPRYAQMFRARPLRFRL 329
                     FEK  ++                         S   YA+ FR RP R  L
Sbjct: 307 TLFFLHIINCFEKNGSVIVDLCAYKDPKALDAMYVHAIETMQSNADYAEWFRGRPKRLEL 366

Query: 330 DLASPRTAPTGKVRPSVICDVGCETPRMN-GQHQGRPYTYFYAISADIDRDNPGTLIKVN 388
            L +PR A   KV P+++ D+GCETPR++   + G+PY YFYAIS+D+D +NPGT+IK +
Sbjct: 367 PLDAPRLA---KVVPTILADLGCETPRIHYDLYNGKPYRYFYAISSDVDAENPGTVIKAD 423

Query: 389 VQNNTCKSWSQKDVYPSEPVFVATPNAVKEDEGVLLSVLLW-SHHPTRVSLLVLNARTMQ 447
                 K+W + + YPSEPVFV TP+A  ED+GVLL  L+W       V+LLVL+ARTM 
Sbjct: 424 TVTGVTKTWCEPNCYPSEPVFVPTPDAKNEDDGVLLCALVWGGDREHEVALLVLDARTML 483

Query: 448 ELGRVNFTTPTPVPKCLHGWYFPH 471
           E+ R  F TP+P PKCLHGW+ P 
Sbjct: 484 EVARAQFRTPSPAPKCLHGWFLPQ 507

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|170029741\|ref\|XP_001842750.1\| beta,beta-carotene 15,15'-monooxygenase [Culex quinquefasciatus] gi\|167864069\|gb\|EDS27452.1\| beta,beta-carotene 15,15'-monooxygenase [Culex quinquefasciatus]	Back alignment and taxonomy information

>gi\|384402278\|gb\|AFH88674.1\| predicted carotinoid oxygenase [Bombyx mori]	Back alignment and taxonomy information

>gi\|357615480\|gb\|EHJ69683.1\| neither inactivation nor afterpotential B [Danaus plexippus]	Back alignment and taxonomy information

>gi\|158297012\|ref\|XP_317319.4\| AGAP008143-PA [Anopheles gambiae str. PEST] gi\|157014990\|gb\|EAA12399.4\| AGAP008143-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|157135394\|ref\|XP_001656637.1\| beta-carotene dioxygenase [Aedes aegypti] gi\|108881266\|gb\|EAT45491.1\| AAEL003211-PA [Aedes aegypti]	Back alignment and taxonomy information

>gi\|345495227\|ref\|XP_001604720.2\| PREDICTED: beta,beta-carotene 9',10'-oxygenase-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|195109402\|ref\|XP_001999276.1\| GI23158 [Drosophila mojavensis] gi\|193915870\|gb\|EDW14737.1\| GI23158 [Drosophila mojavensis]	Back alignment and taxonomy information

>gi\|383854575\|ref\|XP_003702796.1\| PREDICTED: beta,beta-carotene 15,15'-monooxygenase-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|350397676\|ref\|XP_003484952.1\| PREDICTED: beta,beta-carotene 9',10'-oxygenase-like [Bombus impatiens]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		476
FB\|FBgn0002937		620	ninaB "neither inactivation no	0.590	0.453	0.466	2.2e-117
UNIPROTKB\|E1C8E0		548	BCO2 "Uncharacterized protein"	0.535	0.465	0.364	1.4e-66
ZFIN\|ZDB-GENE-060421-7448		555	bco2b "beta-carotene oxygenase	0.556	0.477	0.363	4.8e-66
ZFIN\|ZDB-GENE-040426-1191		525	bcmo1b "beta-carotene 15,15'-m	0.542	0.491	0.363	9.9e-64
UNIPROTKB\|Q9YGX2		533	RPE65 "Retinoid isomerohydrola	0.5	0.446	0.368	2e-63
UNIPROTKB\|Q9I993		526	BCMO1 "Beta,beta-carotene 15,1	0.552	0.5	0.334	2e-63
ZFIN\|ZDB-GENE-040426-1717		531	rpe65a "retinal pigment epithe	0.544	0.487	0.374	3.3e-63
MGI\|MGI:2177469		532	Bco2 "beta-carotene oxygenase	0.527	0.471	0.346	3.3e-63
ZFIN\|ZDB-GENE-081104-505		532	rpe65c "retinal pigment epithe	0.544	0.486	0.348	8.8e-63
UNIPROTKB\|F1SM94		575	BCO2 "Uncharacterized protein"	0.537	0.445	0.324	8.8e-63

FB\|FBgn0002937 ninaB "neither inactivation nor afterpotential B" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 722 (259.2 bits), Expect = 2.2e-117, Sum P(3) = 2.2e-117
 Identities = 133/285 (46%), Positives = 184/285 (64%)

Query:    30 RVENGDSIFDNVDAGVWFRDCHTEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESF 89
             R++    ++ N  + VW R C  E+  P++G   G IP WI G L+RNGPGSW VG+ +F
Sbjct:    29 RLDGNGRLYPNCSSDVWLRSCEREIVDPIEGHHSGHIPKWICGSLLRNGPGSWKVGDMTF 88

Query:    90 DHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQ 149
              HLFDCS LLHRF I +G VTYQ +F+ +E+  KN +A+RIVVT FGT  VPDPC SIF 
Sbjct:    89 GHLFDCSALLHRFAIRNGRVTYQNRFVDTETLRKNRSAQRIVVTEFGTAAVPDPCHSIFD 148

Query:   150 RIATLFKP--GSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLEKMDLARDVTILHQ 207
             R A +F+P  G+DN+++S+YP  DQ Y   ++ +MHRI+P TL T  ++     V +++ 
Sbjct:   149 RFAAIFRPDSGTDNSMISIYPFGDQYYTFTETPFMHRINPCTLATEARICTTDFVGVVNH 208

Query:   208 TSHPLTTSDGETFNLGVTLRPTGPRYCILQL--NDVADHRVKLVTSVPVRWKFHPGYMHT 265
             TSHP     G  +NLG T+  +GP Y IL     +       +V ++P RWK HPGYMHT
Sbjct:   209 TSHPHVLPSGTVYNLGTTMTRSGPAYTILCFPHGEQMFEDAHVVATLPCRWKLHPGYMHT 268

Query:   266 FAMTPHYFIIVEQPLSISVPRLIKNSVTNRPLATCLKFFEKQSNI 310
             F +T HYF+IVEQPLS+S+   IK  +  + L+ CLK+FE +  +
Sbjct:   269 FGLTDHYFVIVEQPLSVSLTEYIKAQLGGQNLSACLKWFEDRPTL 313

GO:0007604 "phototransduction, UV" evidence=IMP

GO:0016063 "rhodopsin biosynthetic process" evidence=IDA;IMP

GO:0007603 "phototransduction, visible light" evidence=IMP

GO:0007602 "phototransduction" evidence=TAS

GO:0003834 "beta-carotene 15,15'-monooxygenase activity" evidence=IMP;IDA;NAS

GO:0016119 "carotene metabolic process" evidence=IDA

GO:0035238 "vitamin A biosynthetic process" evidence=IMP;IDA

GO:0009110 "vitamin biosynthetic process" evidence=IMP

GO:0010436 "carotenoid dioxygenase activity" evidence=IDA

GO:0042574 "retinal metabolic process" evidence=IDA

GO:0004744 "retinal isomerase activity" evidence=IDA

UNIPROTKB\|E1C8E0 BCO2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060421-7448 bco2b "beta-carotene oxygenase 2b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1191 bcmo1b "beta-carotene 15,15'-monooxygenase 1b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9YGX2 RPE65 "Retinoid isomerohydrolase" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9I993 BCMO1 "Beta,beta-carotene 15,15'-monooxygenase" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1717 rpe65a "retinal pigment epithelium-specific protein 65a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:2177469 Bco2 "beta-carotene oxygenase 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-081104-505 rpe65c "retinal pigment epithelium-specific protein 65c" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SM94 BCO2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.99	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		476
pfam03055		469	pfam03055, RPE65, Retinal pigment epithelial membr	3e-97
COG3670		490	COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge	2e-39
PLN02258		590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	3e-08
PLN02491		545	PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava	1e-04
PLN02969		610	PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen	0.001

>gnl\|CDD\|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein	Back alignment and domain information

 Score =  300 bits (771), Expect = 3e-97
 Identities = 139/490 (28%), Positives = 201/490 (41%), Gaps = 87/490 (17%)

Query: 46  WFRDCHTEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKIS 105
            F     E+       VEG IP+ ++G L RNGPG    G   + H FD  G+LH F+  
Sbjct: 1   NFAPVREELPDAEDLEVEGEIPADLNGTLYRNGPGPLERGGFRYHHWFDGDGMLHAFRFE 60

Query: 106 SGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPGSDNTLVS 165
            G VTY+ +F+++E Y    AA R +  G      PDPC +IF R   +     +    +
Sbjct: 61  DGRVTYRNRFVRTEGYKAERAAGRRLYPGEFGTLKPDPCKNIFPR---VPGKLKNVANTN 117

Query: 166 VYPIQDQVYALGDSNYMHRIDPATLDTLEKMDLARDVTILHQ-TSHPLT-TSDGETFNLG 223
           V     ++ AL ++   +R+DP TL+TL + D    +      T+HP      GE  N G
Sbjct: 118 VVYHGGRLLALWEAGLPYRLDPETLETLGRYDFGGKLKPGPPFTAHPKVDPVTGELVNFG 177

Query: 224 VTLRPTGPRYCILQLNDVADHRVKLVTSVPVRWKFHPGYMHTFAMTPHYFIIVEQPLSIS 283
           ++L P  P           D   KLV  VP+     P  +H FA+T +Y I  + PL   
Sbjct: 178 LSLGPKPPYLTYY----EVDADGKLVREVPIFSLPGPSMIHDFAITENYVIFPDLPLVFD 233

Query: 284 VPRLIKNSVTNRPLATCLKF------------------------------------FEKQ 307
             RL+         A  L++                                    +E+ 
Sbjct: 234 PLRLLLGG-----RADPLRWDPEKPTRFGVIPRRGGKSDVRWFEAPPCFVFHTANAWEEG 288

Query: 308 SNIH---------------------STPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSV 346
             I                            +  R+R  R+RLDL +        V   V
Sbjct: 289 GEIVLDACRYDDPDFLDPFYLDNLRPDAFADKKPRSRLTRWRLDLKTGG-----DVTEEV 343

Query: 347 ICDVGCETPRMNGQHQGRPYTYFYAISADIDRDNPG---TLIKVNVQNNTCKSWSQKD-V 402
           + D  CE PR+N ++ GR Y Y Y  +AD      G    L+KV+++    + WS     
Sbjct: 344 LLDRPCEFPRINPRYVGRKYRYVYMAAADPRPPGSGPFDGLVKVDLETGEVQVWSFGPGC 403

Query: 403 YPSEPVFVATPNAVKEDEGVLLSVLLWSHHPTRVS-LLVLNARTMQE--LGRVNFTTPTP 459
           YP EP+FV  P A  ED+G LLSV+      T  S LL+L+A+ + E  + RV    P  
Sbjct: 404 YPGEPIFVPRPGAADEDDGWLLSVVYDED--TGRSELLILDAKDLTEGPVARVEL--PHR 459

Query: 460 VPKCLHGWYF 469
           VP   HG + 
Sbjct: 460 VPYGFHGTWV 469

This family represents a retinal pigment epithelial membrane receptor which is abundantly expressed in retinal pigment epithelium, and binds plasma retinal binding protein. The family also includes the sequence related neoxanthin cleavage enzyme in plants and lignostilbene-alpha,beta-dioxygenase in bacteria. Length = 469

>gnl\|CDD\|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

>gnl\|CDD\|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

>gnl\|CDD\|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		476
PLN02258		590	9-cis-epoxycarotenoid dioxygenase NCED	100.0
COG3670		490	Lignostilbene-alpha,beta-dioxygenase and related e	100.0
PLN02491		545	carotenoid 9,10(9',10')-cleavage dioxygenase	100.0
PF03055		486	RPE65: Retinal pigment epithelial membrane protein	100.0
PLN02969		610	9-cis-epoxycarotenoid dioxygenase	100.0
KOG1285\|consensus		582		100.0
KOG1285\|consensus		582		99.88

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

Probab=100.00  E-value=5.3e-102  Score=836.05  Aligned_cols=424  Identities=22%  Similarity=0.355  Sum_probs=353.6

Q ss_pred             hcCCCCCCCcccccccccCCccccCC---ccceEEeeCCCCCceEEEeecCCCCCCCCcccccccCCCCceEEEEEecCc
Q psy5322          32 ENGDSIFDNVDAGVWFRDCHTEVDQP---VQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGL  108 (476)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~e~~~~---~~~~V~G~IP~~L~Gtl~RnGP~~~~~g~~~~~H~FDGdGmlh~~~f~~G~  108 (476)
                      |++++|+++.||.++++++++++.+.   ..++|+|+||+||+|||||||||+++. +..++||||||||||+|+|+||+
T Consensus       100 ~~~~~~~~~~~~~~~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f~-p~~~~H~FDGDGMvhav~f~dG~  178 (590)
T PLN02258        100 ERQHPLPKTADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFE-PVAGHHLFDGDGMVHAVRIGNGS  178 (590)
T ss_pred             cccCCCCCCCCcceeccCCCcCccccCCcccceEEeeCCCCCCeEEEEeCCCCCCC-CCCCCccccCCceEEEEEECCCe
Confidence            78899999999999999999998762   358999999999999999999998764 35678999999999999999999


Q ss_pred             EEEEEEEecCHHHHHHHHcCCceeec-cCcccCCCC-cchH--HHH-HHhhcCC--CCCCceeeeeeeCCEEEEeecCCc
Q psy5322         109 VTYQCKFIKSESYIKNHAARRIVVTG-FGTRFVPDP-CASI--FQR-IATLFKP--GSDNTLVSVYPIQDQVYALGDSNY  181 (476)
Q Consensus       109 v~y~~RfV~T~~~~~e~~agr~l~~~-fg~~~~~~p-~~~~--~~r-~~~~~~~--~~~~aNt~v~~~gg~LlAl~E~~~  181 (476)
                      |+|+||||||++|++|+++||++|++ +|+...... .+..  +.+ +.+.++.  .+++|||||++|+||||||||+|.
T Consensus       179 a~y~~RfVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~  258 (590)
T PLN02258        179 ASYACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDL  258 (590)
T ss_pred             EEEEeeeecchhHHHHHhcCCcccccccccccccccccccchhhccccccccccccccCCCceeEEEECCEEEEEEcCCC
Confidence            99999999999999999999999986 887643221 1111  112 1222322  468999999999999999999999


Q ss_pred             eeEEcCC---CCcccccccCCCccCCCCcCccceecC-CCCEEEEEeeeCCCCCeEEEEEE-CCCcccceEEEEeeeccC
Q psy5322         182 MHRIDPA---TLDTLEKMDLARDVTILHQTSHPLTTS-DGETFNLGVTLRPTGPRYCILQL-NDVADHRVKLVTSVPVRW  256 (476)
Q Consensus       182 p~~iDp~---TLeT~G~~d~~g~l~~~~~tAHPk~Dp-~Ge~~~~g~~~~~~~~~~~v~~~-~~g~~~~~~~v~~~~~~~  256 (476)
                      ||+||++   ||||+|++||+|+|. .+||||||+|| |||+++|+|++.. +|+++++.+ ++|.     +...+++ .
T Consensus       259 Py~l~~d~~~TLeT~G~~df~g~l~-~~ftAHPKvDP~TGel~~f~y~~~~-~p~l~~~~~d~~G~-----~~~~~~i-~  330 (590)
T PLN02258        259 PYQVRITGDGDLETVGRYDFDGQLD-SSMIAHPKVDPVTGELFALSYDVVK-KPYLKYFRFSPDGE-----KSPDVEI-P  330 (590)
T ss_pred             ceEecCCCCCCcccCcccccCCccC-cccccCceEcCCCCeEEEEEEeccC-CCcEEEEEECCCCC-----EEeeEEe-e
Confidence            9999653   999999999999994 78999999999 9999999998764 488999999 6662     2222233 2


Q ss_pred             CCCCceeeeeeecCCEEEEEecCceechhhhhcccC----------------CCCCCCcceEEeccC-------CCCCCC
Q psy5322         257 KFHPGYMHTFAMTPHYFIIVEQPLSISVPRLIKNSV----------------TNRPLATCLKFFEKQ-------SNIHST  313 (476)
Q Consensus       257 ~~~p~~iHDfaiTeny~V~~~~P~~~~~~~~~~g~~----------------~~~~~~~~~~W~~~~-------~n~~~~  313 (476)
                      ++.|+|||||||||||+||+++|+.+++.+|++|..                +.....+.++|++.+       .|+.++
T Consensus       331 lp~p~~~HDFaiTenY~Vf~d~Pl~~~~~~~~~g~~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee  410 (590)
T PLN02258        331 LDQPTMMHDFAITENFVVIPDQQVVFKLSEMIRGGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEE  410 (590)
T ss_pred             CCCCccccceeccCceEEEEccCceEcHHHHhhCCCceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEeccccccc
Confidence            578999999999999999999999999999987742                111234578998877       455432


Q ss_pred             --c--c-------------c---cccCCCcceEEEEeCCCCCCCCCCceeeeEecc---CCccCccccCCCCCCCCcEEE
Q psy5322         314 --P--R-------------Y---AQMFRARPLRFRLDLASPRTAPTGKVRPSVICD---VGCETPRMNGQHQGRPYTYFY  370 (476)
Q Consensus       314 --~--~-------------~---~~~~~~~l~R~~idl~tg~~~~~~~~~~~~l~~---~~~EfP~In~~~~Gr~yRy~Y  370 (476)
                        .  .             +   ...++++|+||||||++|      .++++.+.+   .++|||+||++|.||+|||+|
T Consensus       411 ~~~~~VVvd~~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg------~~~~~~l~~~~~~~~EFP~In~~~~Grk~Ry~Y  484 (590)
T PLN02258        411 PETDEVVVIGSCMTPPDSIFNESDESLRSVLSEIRLNLRTG------ESTRRPIISGEQVNLEAGMVNRNLLGRKTRYAY  484 (590)
T ss_pred             CCCCeEEEEEecccChhhhcccccccccceEEEEEEECCCC------ceeeeEeecCCCcccccceECHHHCCCccceEE
Confidence              1  0             1   123467899999999998      245566654   799999999999999999999


Q ss_pred             EeecCCCCCCCCeEEEEeccCCceEEEc-CCCCCCCccEEeeCCCCCC-CCCcEEEEEEEeCCCCCceEEEEEeCCCCCc
Q psy5322         371 AISADIDRDNPGTLIKVNVQNNTCKSWS-QKDVYPSEPVFVATPNAVK-EDEGVLLSVLLWSHHPTRVSLLVLNARTMQE  448 (476)
Q Consensus       371 ~~~~~~~~~~~~~l~K~Dl~tg~~~~w~-~~~~~~~EPvFVPrp~~~~-EDDG~ll~~v~d~~~~~~s~LlILDA~~l~~  448 (476)
                      ++..+++ ..+++|+|+|+++|+++.|. ++++|+|||+||||+++.+ |||||||++|+|+.+ ++|+|+||||++|++
T Consensus       485 ~~~~~~~-~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~EDDGylls~V~d~~~-~~SeL~IlDA~~l~~  562 (590)
T PLN02258        485 LAIAEPW-PKVSGFAKVDLSTGEVKKYIYGEGRYGGEPFFVPRGSGSEAEDDGYILAFVHDEEK-GKSELQVVNAVNLEL  562 (590)
T ss_pred             EeccCCC-CCCCeEEEEECCCCcEEEEECCCCccccCCEeccCCCCCcccCCcEEEEEEEECCC-CceEEEEEeCCCCcc
Confidence            9877654 45899999999999999875 9999999999999998874 999999999999984 789999999999999


Q ss_pred             ceEEEEeCCCCCCCCCceeeecCCCC
Q psy5322         449 LGRVNFTTPTPVPKCLHGWYFPHERK  474 (476)
Q Consensus       449 vAr~~l~~P~~vP~gfHG~f~~~~~~  474 (476)
                      ||||+|  |+|||+||||+|++.++.
T Consensus       563 VArv~L--P~rVP~GFHG~wv~~~~l  586 (590)
T PLN02258        563 EATVKL--PSRVPYGFHGTFISAEDL  586 (590)
T ss_pred             cEEEEC--CCCCCCcccccccCHHHH
Confidence            999999  999999999999998654

>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection	Back alignment and domain information

>PLN02969 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

>KOG1285\|consensus	Back alignment and domain information

>KOG1285\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		476
3fsn_A		533	Crystal Structure Of Rpe65 At 2.14 Angstrom Resolut		4e-45
3fsn_A		533	Crystal Structure Of Rpe65 At 2.14 Angstrom Resolut		2e-14
2biw_A		490	Crystal Structure Of Apocarotenoid Cleavage Oxygena		1e-22
3npe_A		529	Structure Of Vp14 In Complex With Oxygen Length = 5		4e-04

>pdb|3FSN|A Chain A, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution Length = 533

Back alignment and structure

Iteration: 1

Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 148/247 (59%), Gaps = 9/247 (3%) Query: 53 EVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQ 112 E+ P+ V G IP W+ G L+R GPG + VG E F HLFD LLH+F G VTY Sbjct: 21 ELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYH 80 Query: 113 CKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFK--PGSDNTLVSVYPIQ 170 +FI++++Y++ +RIV+T FGT PDPC +IF R + F+ +DN LV++YP+ Sbjct: 81 RRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVEVTDNALVNIYPVG 140 Query: 171 DQVYALGDSNYMHRIDPATLDTLEKMDLARDVTILHQTSHPLTTSDGETFNLGVTL-RPT 229 + YA ++N++ +++P TL+T++++DL V++ T+HP +DG +N+G + Sbjct: 141 EDYYACTETNFITKVNPETLETIKQVDLCNYVSVNGATAHPHIENDGTVYNIGNCFGKNF 200 Query: 230 GPRYCILQL----NDVAD--HRVKLVTSVPVRWKFHPGYMHTFAMTPHYFIIVEQPLSIS 283 Y I+++ D D + ++V P +F P Y+H+F +TP+Y + VE P+ I+ Sbjct: 201 SIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKIN 260 Query: 284 VPRLIKN 290 + + + + Sbjct: 261 LFKFLSS 267

PyMOL of 3fsn

>pdb|3FSN|A Chain A, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution Length = 533

Back alignment and structure

>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490

Back alignment and structure

>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		476
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	2e-92
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	1e-65
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	8e-26
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	5e-56
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490	Back alignment and structure

 Score =  288 bits (739), Expect = 2e-92
 Identities = 107/496 (21%), Positives = 192/496 (38%), Gaps = 84/496 (16%)

Query: 38  FDNVDAGVWFRDCHTEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSG 97
           +   D    ++    E D      VEG IP  + G L RNGPG   +G+    H FD  G
Sbjct: 15  YSPQDWLRGYQSQPQEWD-YWVEDVEGSIPPDLQGTLYRNGPGLLEIGDRPLKHPFDGDG 73

Query: 98  LLHRFKISS-GLVTYQCKFIKSESYIKNHAARRIVVTG-FGTRFVPDPCASIFQRIATLF 155
           ++  FK    G V +Q KF++++ Y++   A +++  G FG++       +IF       
Sbjct: 74  MVTAFKFPGDGRVHFQSKFVRTQGYVEEQKAGKMIYRGVFGSQPAGGWLKTIFDL----- 128

Query: 156 KPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLEKMDLARDVTI-LHQTSHPL-- 212
               +    ++    D++ AL +    HR++P+ L T+   DL   +      ++HP   
Sbjct: 129 -RLKNIANTNITYWGDRLLALWEGGQPHRLEPSNLATIGLDDLGGILAEGQPLSAHPRID 187

Query: 213 ---TTSDGETFNLGVTLRPTGPRYCILQLNDVADHRVKLVTSVPVRWKFHPGYMHTFAMT 269
              T   G+   +  +++ +      L      D + KL+      +     ++H FA+T
Sbjct: 188 PASTFDGGQPCYVTFSIKSSLSSTLTL---LELDPQGKLLRQKTETFP-GFAFIHDFAIT 243

Query: 270 PHYFIIVEQPLSISVPRLIKNSVTNRPLATCLKFF-EKQSNIHSTPR------------- 315
           PHY I ++  ++++    +      R    C++F  +K + I   PR             
Sbjct: 244 PHYAIFLQNNVTLNGLPYLFG---LRGAGECVQFHPDKPAQIILVPRDGGEIKRIPVQAG 300

Query: 316 --------------------------------------YAQMFRARPLRFRLDLASPRTA 337
                                                 +  +   +  RF +D A     
Sbjct: 301 FVFHHANAFEENGKIILDSICYNSLPQVDTDGDFRSTNFDNLDPGQLWRFTIDPA----- 355

Query: 338 PTGKVRPSVICDVGCETPRMNGQHQGRPYTYFYAISADIDRDNP--GTLIKVNVQNNTCK 395
               V   ++    CE P ++ Q  GRPY Y Y  +A     N     ++KV++++ T  
Sbjct: 356 -AATVEKQLMVSRCCEFPVVHPQQVGRPYRYVYMGAAHHSTGNAPLQAILKVDLESGTET 414

Query: 396 SWSQKD-VYPSEPVFVATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNF 454
             S     +  EP+FV  P  V ED+G LL + ++     R  L++L+A+ +        
Sbjct: 415 LRSFAPHGFAGEPIFVPRPGGVAEDDGWLLCL-IYKADLHRSELVILDAQDITAPAIATL 473

Query: 455 TTPTPVPKCLHGWYFP 470
                +P  LHG +  
Sbjct: 474 KLKHHIPYPLHGSWAQ 489

PyMOL of 2biw

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533	Back alignment and structure

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		476
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	100.0
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	100.0
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	100.0

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A	Back alignment and structure

Probab=100.00  E-value=4.5e-108  Score=882.56  Aligned_cols=423  Identities=33%  Similarity=0.652  Sum_probs=346.0

Q ss_pred             ccccccCCccccCCccceEEeeCCCCCceEEEeecCCCCCCCCcccccccCCCCceEEEEEecCcEEEEEEEecCHHHHH
Q psy5322          44 GVWFRDCHTEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIK  123 (476)
Q Consensus        44 ~~~~~~~~~e~~~~~~~~V~G~IP~~L~Gtl~RnGP~~~~~g~~~~~H~FDGdGmlh~~~f~~G~v~y~~RfV~T~~~~~  123 (476)
                      +..|+ +..|.++|++++|+|+||+||+|||||||||++++|+.+++||||||||||+|+|++|+|+|+||||||++|++
T Consensus        13 ~~~f~-~~~E~~~p~~l~V~G~IP~~L~Gtl~RNGPg~~~~g~~~~~HwFDGdGmlh~~~~~~G~v~y~~R~v~T~~~~~   91 (533)
T 3kvc_A           13 KKLFE-TVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIRTDAYVR   91 (533)
T ss_dssp             GGGGS-CCCCCSSCEECEEEECCCTTCCEEEEEEEECCCEETTEECCBTTTSCEEEEEEEEETTEEEEEEEECCCHHHHH
T ss_pred             hhhcC-cccccCCceeeeEEeeCCCCCceEEEEeCCCccccCCcccccccCCCCEEEEEEEeCCEEEEEEEEecCHHHHH
Confidence            33456 55777888889999999999999999999999998888899999999999999999999999999999999999


Q ss_pred             HHHcCCceeeccCcccCCCCcchHHHHHHhhcCC--CCCCceeeeeeeCCEEEEeecCCceeEEcCCCCcccccccCCCc
Q psy5322         124 NHAARRIVVTGFGTRFVPDPCASIFQRIATLFKP--GSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLEKMDLARD  201 (476)
Q Consensus       124 e~~agr~l~~~fg~~~~~~p~~~~~~r~~~~~~~--~~~~aNt~v~~~gg~LlAl~E~~~p~~iDp~TLeT~G~~d~~g~  201 (476)
                      |+++||++|++||+.+.++||+++|+++++.+..  .+++|||||++|+|+||||||++.||+|||+||||+|++||+|+
T Consensus        92 e~~agr~~~~~fg~~~~~~p~~~~~~~~~~~~~~~~~~~~ANt~v~~~~g~LlAl~E~~~p~~iDp~tLeT~G~~d~~g~  171 (533)
T 3kvc_A           92 AMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVEVTDNALVNIYPVGEDYYACTETNFITKVNPETLETIKQVDLCNY  171 (533)
T ss_dssp             HHHHTSCCSCBTTBCC-------------------CCCCCCCSEEEEETTEEEEECSSSEEEEECTTTCCEEEEEEHHHH
T ss_pred             HHHcCCcceeccCcccCCcchhhHHHHHHHhhccCCCCCCCEEEEEEECCEEEEEEcCCcCEEeChHHcccccccccCCc
Confidence            9999999999999999999999999998777654  68999999999999999999999999999999999999999999


Q ss_pred             cCCCCcCccceecCCCCEEEEEeeeCCC-CCeEEEEEEC-C-----CcccceEEEEeeeccCCCCCceeeeeeecCCEEE
Q psy5322         202 VTILHQTSHPLTTSDGETFNLGVTLRPT-GPRYCILQLN-D-----VADHRVKLVTSVPVRWKFHPGYMHTFAMTPHYFI  274 (476)
Q Consensus       202 l~~~~~tAHPk~Dp~Ge~~~~g~~~~~~-~~~~~v~~~~-~-----g~~~~~~~v~~~~~~~~~~p~~iHDfaiTeny~V  274 (476)
                      |+...||||||+|||||+||||+++++. .+.|.+|+++ .     +.+.+.++++++++++++.|+|||||||||||+|
T Consensus       172 l~~~~~tAHPk~DptGel~~fg~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~p~~iHDFaiTeny~V  251 (533)
T 3kvc_A          172 VSVNGATAHPHIENDGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIV  251 (533)
T ss_dssp             SSCSCCCSCCEECTTSCEEEEEEECC---CCEEEEEEECCCCTTCCCGGGGCEEEEEEECSSTTCCBCCCCCEECSSEEE
T ss_pred             cCCCccCCCCccCCCCCEEEEeeccCCCCCcEEEEEEECccccccccccccceeEEeeccccCCCCceeeeeeecCCEEE
Confidence            9877899999999999999999998864 5789999994 2     2355677889999888889999999999999999


Q ss_pred             EEecCceechhhhhcc-cCCCCCCCcceEEeccC-----------------------------CCCCC------------
Q psy5322         275 IVEQPLSISVPRLIKN-SVTNRPLATCLKFFEKQ-----------------------------SNIHS------------  312 (476)
Q Consensus       275 ~~~~P~~~~~~~~~~g-~~~~~~~~~~~~W~~~~-----------------------------~n~~~------------  312 (476)
                      |+++|+++|+.+|++| +++..++.++++|+++.                             .|+.+            
T Consensus       252 f~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr~~VipR~~~~~~~~~~~~~~~f~fH~~NA~Ee~~~Iv~d~~~~  331 (533)
T 3kvc_A          252 FVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYINNKYRTSPFNLFHHINTYEDHEFLIVDLCCW  331 (533)
T ss_dssp             EEECSEEEC-----------CCCSGGGEEECSSCCEEEEEEETTTTEEEEEEEEECCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEeCCeEEcHHHHhhcccccCCChHHheeecCCCCcEEEEEECCCCCcccEEEEeCCeeEEeeeeeEEeCCEEEEEEeee
Confidence            9999999999999987 66677888899999877                             12211            


Q ss_pred             -C-c-ccc-------------------ccCCCcceEEEEeCCCCCC-----------CC-C------C--ceeeeEecc-
Q psy5322         313 -T-P-RYA-------------------QMFRARPLRFRLDLASPRT-----------AP-T------G--KVRPSVICD-  349 (476)
Q Consensus       313 -~-~-~~~-------------------~~~~~~l~R~~idl~tg~~-----------~~-~------~--~~~~~~l~~-  349 (476)
                       + . .+.                   ...+++|+||+|||+++..           ++ +      +  +++++.|++ 
T Consensus       332 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~~~~~~~~~~~~~~l~~~  411 (533)
T 3kvc_A          332 KGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSG  411 (533)
T ss_dssp             ESSSCGGGGCBHHHHTSCHHHHHHHHTTSCEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEEEECTTSEEEEECEEEECB
T ss_pred             CCchhhhhhhhhhhhcccchhccccccccCCceEEEEEEeCCcccccccccccccccccceeeeccCCceeeeeeeeccC
Confidence             1 0 000                   1244679999999987510           00 0      0  156788875 


Q ss_pred             -C-CccCccccC-CCCCCCCcEEEEeecCCCCCCCCeEEEEeccCCceEEEcCCCCCCCccEEeeCCCCCCCCCcEEEEE
Q psy5322         350 -V-GCETPRMNG-QHQGRPYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNAVKEDEGVLLSV  426 (476)
Q Consensus       350 -~-~~EfP~In~-~~~Gr~yRy~Y~~~~~~~~~~~~~l~K~Dl~tg~~~~w~~~~~~~~EPvFVPrp~~~~EDDG~ll~~  426 (476)
                       . +||||+||+ +|.||+|||+|+++.+  ...+++|+|+|++||+.+.|+++++|+|||||||||++++|||||||++
T Consensus       412 ~~~~~EfP~In~~~~~Gr~~Ry~Y~~~~~--~~~~~~l~K~D~~tg~~~~w~~~~~~~~EPiFVPrp~~~~EDDG~lLs~  489 (533)
T 3kvc_A          412 PRQAFEFPQINYQKYGGKPYTYAYGLGLN--HFVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALEEDDGVVLSV  489 (533)
T ss_dssp             TTEEEEEEECCHHHHTTSCCCEEEEEEEE--TTEEEEEEEEETTTCCEEEECCTTCBCCCCEEEECTTCCSTTCEEEEEE
T ss_pred             CcccccCceECHHHhCCCcccEEEEeccC--CCCCceeEEEEcCCCCEEEEeCCCccccCceeecCCCCCCCCCcEEEEE
Confidence             6 899999998 7999999999998765  3457899999999999999999999999999999999999999999999


Q ss_pred             EEeCCC-CCceEEEEEeCCCCCcceEEEEeCCCCCCCCCceeeecC
Q psy5322         427 LLWSHH-PTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPH  471 (476)
Q Consensus       427 v~d~~~-~~~s~LlILDA~~l~~vAr~~l~~P~~vP~gfHG~f~~~  471 (476)
                      |+|..+ +++|+|+||||++|++||||+|  |++||+||||+|++.
T Consensus       490 V~d~~~~~~~s~LlILDA~~l~~vArv~l--P~rvP~GfHG~w~~~  533 (533)
T 3kvc_A          490 VVSPGAGQKPAYLLILNAKDLSEVARAEV--EINIPVTFHGLFKKS  533 (533)
T ss_dssp             EECCSTTSCSEEEEEEETTTCCEEEEEEE--SSCCCCCCEEEEEEC
T ss_pred             EEeCCcCCCccEEEEEeCCCChhhEEEEe--CCCCCCCccccccCC
Confidence            999985 4678999999999999999999  999999999999974

PyMOL of 3kvc

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}	Back alignment and structure

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00