Psyllid ID: psy5380

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMVSTLALR
cHHHHHHccccEEEEccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHcccc
HHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHccccccEEEEEcEccEcHHHHHcHHHHHHHHccEEEEEcccHHHHHHcccccccccccHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHccc
mnhainqgwimywgtsrwspVEIMEAYSncrqfncatpiieqteyhmfcrdKAELYMPELYNKIGVGMMAWSPISMALISgkieeftvpvypkssklvpkLNAAVMGEVERvldnkparppmvstlalr
mnhainqgwimywGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSSKLVPKLNAAVMGEVErvldnkparppmvstlalr
MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMVSTLALR
****INQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSSKLVPKLNAAVMG**********************
MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALISGKIEEFT***********PKLNAAVMGEVERVLDNKPARPPMVSTLALR
MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMVSTLALR
MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMVSTLALR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMVSTLALR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query129 2.2.26 [Sep-21-2011]
Q13303367 Voltage-gated potassium c no N/A 0.728 0.256 0.589 2e-28
Q27955367 Voltage-gated potassium c yes N/A 0.728 0.256 0.589 3e-28
P62483367 Voltage-gated potassium c yes N/A 0.728 0.256 0.589 3e-28
P62482367 Voltage-gated potassium c yes N/A 0.728 0.256 0.589 3e-28
Q9PTM5367 Voltage-gated potassium c N/A N/A 0.728 0.256 0.589 5e-28
Q9PWR1401 Voltage-gated potassium c no N/A 0.635 0.204 0.646 1e-27
Q9XT31419 Voltage-gated potassium c no N/A 0.635 0.195 0.646 1e-27
P63144401 Voltage-gated potassium c no N/A 0.635 0.204 0.646 1e-27
Q4PJK1401 Voltage-gated potassium c no N/A 0.635 0.204 0.646 1e-27
P63143401 Voltage-gated potassium c no N/A 0.635 0.204 0.646 1e-27
>sp|Q13303|KCAB2_HUMAN Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2 Back     alignment and function desciption
 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/95 (58%), Positives = 70/95 (73%), Gaps = 1/95 (1%)

Query: 1   MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
           M H INQG  MYWGTSRWS +EIMEAYS  RQFN   PI EQ EYHMF R+K E+ +PEL
Sbjct: 173 MTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPEL 232

Query: 61  YNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSS 95
           ++KIGVG M WSP++  ++SGK +   +P Y ++S
Sbjct: 233 FHKIGVGAMTWSPLACGIVSGKYDS-GIPPYSRAS 266
Accessory potassium channel protein which modulates the activity of the pore-forming alpha subunit. Alters functional properties of Kv1.4.
Homo sapiens (taxid: 9606)
>sp|Q27955|KCAB2_BOVIN Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1 Back     alignment and function description
>sp|P62483|KCAB2_RAT Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1 Back     alignment and function description
>sp|P62482|KCAB2_MOUSE Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1 Back     alignment and function description
>sp|Q9PTM5|KCAB2_XENLA Voltage-gated potassium channel subunit beta-2 OS=Xenopus laevis GN=kcnab2 PE=2 SV=1 Back     alignment and function description
>sp|Q9PWR1|KCAB1_CHICK Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XT31|KCAB1_RABIT Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1 Back     alignment and function description
>sp|P63144|KCAB1_RAT Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1 Back     alignment and function description
>sp|Q4PJK1|KCAB1_BOVIN Voltage-gated potassium channel subunit beta-1 OS=Bos taurus GN=KCNAB1 PE=2 SV=1 Back     alignment and function description
>sp|P63143|KCAB1_MOUSE Voltage-gated potassium channel subunit beta-1 OS=Mus musculus GN=Kcnab1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query129
242020652 422 predicted protein [Pediculus humanus cor 0.736 0.225 0.736 1e-39
270006808 530 hypothetical protein TcasGA2_TC013190 [T 0.728 0.177 0.715 2e-38
189237722 415 PREDICTED: similar to Hyperkinetic CG326 0.728 0.226 0.715 4e-38
328793650 470 PREDICTED: voltage-gated potassium chann 0.736 0.202 0.663 5e-35
110768710 266 PREDICTED: voltage-gated potassium chann 0.736 0.357 0.663 6e-35
158299115 396 AGAP010067-PA [Anopheles gambiae str. PE 0.961 0.313 0.574 9e-35
157113925 418 potassium channel beta [Aedes aegypti] g 0.527 0.162 0.794 1e-34
307195202 454 Voltage-gated potassium channel subunit 0.736 0.209 0.663 1e-34
170054421 400 potassium channel beta [Culex quinquefas 0.604 0.195 0.794 1e-34
345496246 455 PREDICTED: voltage-gated potassium chann 0.728 0.206 0.680 1e-34
>gi|242020652|ref|XP_002430766.1| predicted protein [Pediculus humanus corporis] gi|212515963|gb|EEB18028.1| predicted protein [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 70/95 (73%), Positives = 83/95 (87%)

Query: 1   MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
           MNH I+QGW +YWGT+RWS VEIMEAY+NCR FNC TPI EQ+EYHMFCR+K ELYMPEL
Sbjct: 206 MNHVISQGWALYWGTARWSTVEIMEAYTNCRTFNCVTPICEQSEYHMFCREKTELYMPEL 265

Query: 61  YNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSS 95
           YNKIGVG+MAW+P++M LISGKIE+  +P+  KSS
Sbjct: 266 YNKIGVGLMAWAPLTMGLISGKIEDNVIPLVSKSS 300

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|270006808|gb|EFA03256.1| hypothetical protein TcasGA2_TC013190 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189237722|ref|XP_970125.2| PREDICTED: similar to Hyperkinetic CG32688-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328793650|ref|XP_003251910.1| PREDICTED: voltage-gated potassium channel subunit beta-1 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|110768710|ref|XP_001121994.1| PREDICTED: voltage-gated potassium channel subunit beta-2-like, partial [Apis mellifera] Back     alignment and taxonomy information
>gi|158299115|ref|XP_319225.4| AGAP010067-PA [Anopheles gambiae str. PEST] gi|157014213|gb|EAA13777.4| AGAP010067-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157113925|ref|XP_001652141.1| potassium channel beta [Aedes aegypti] gi|108877505|gb|EAT41730.1| AAEL006650-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|307195202|gb|EFN77186.1| Voltage-gated potassium channel subunit beta-2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|170054421|ref|XP_001863121.1| potassium channel beta [Culex quinquefasciatus] gi|167874727|gb|EDS38110.1| potassium channel beta [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|345496246|ref|XP_001603029.2| PREDICTED: voltage-gated potassium channel subunit beta-3-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query129
FB|FBgn0263220547 Hk "Hyperkinetic" [Drosophila 0.604 0.142 0.769 3.4e-45
UNIPROTKB|Q13303367 KCNAB2 "Voltage-gated potassiu 0.728 0.256 0.589 2.6e-32
UNIPROTKB|Q27955367 KCNAB2 "Voltage-gated potassiu 0.728 0.256 0.589 3.4e-32
UNIPROTKB|Q58HC3353 KCNAB2 "Potassium voltage-gate 0.728 0.266 0.589 3.4e-32
UNIPROTKB|E2R6E8398 KCNAB2 "Uncharacterized protei 0.728 0.236 0.589 3.4e-32
UNIPROTKB|J9P0G9367 KCNAB2 "Uncharacterized protei 0.728 0.256 0.589 3.4e-32
MGI|MGI:109239367 Kcnab2 "potassium voltage-gate 0.728 0.256 0.589 3.4e-32
RGD|61828367 Kcnab2 "potassium voltage-gate 0.728 0.256 0.589 3.4e-32
UNIPROTKB|F1NDH6367 KCNAB2 "Uncharacterized protei 0.728 0.256 0.589 5.5e-32
UNIPROTKB|F1NE69368 KCNAB2 "Uncharacterized protei 0.728 0.255 0.589 5.5e-32
FB|FBgn0263220 Hk "Hyperkinetic" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 367 (134.2 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
 Identities = 60/78 (76%), Positives = 71/78 (91%)

Query:     1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
             M++ I QGW MYWGT+RWS VEIMEAY+NCRQFNC TPI+EQ+EYHMFCR+K ELY+PE+
Sbjct:   333 MSYVIQQGWAMYWGTARWSQVEIMEAYTNCRQFNCITPIVEQSEYHMFCREKCELYLPEM 392

Query:    61 YNKIGVGMMAWSPISMAL 78
             YNKIGVG+MAW P+SMAL
Sbjct:   393 YNKIGVGLMAWGPLSMAL 410
GO:0007629 "flight behavior" evidence=IMP
GO:0005249 "voltage-gated potassium channel activity" evidence=ISS;IDA
GO:0008076 "voltage-gated potassium channel complex" evidence=ISS;IPI
GO:0006813 "potassium ion transport" evidence=ISS;IDA
GO:0015459 "potassium channel regulator activity" evidence=IMP
GO:0051259 "protein oligomerization" evidence=IPI
GO:0005737 "cytoplasm" evidence=IEA
GO:0050802 "circadian sleep/wake cycle, sleep" evidence=IDA
UNIPROTKB|Q13303 KCNAB2 "Voltage-gated potassium channel subunit beta-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q27955 KCNAB2 "Voltage-gated potassium channel subunit beta-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q58HC3 KCNAB2 "Potassium voltage-gated channel, shaker-related subfamily, beta member 2, transcript variant 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R6E8 KCNAB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P0G9 KCNAB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:109239 Kcnab2 "potassium voltage-gated channel, shaker-related subfamily, beta member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|61828 Kcnab2 "potassium voltage-gated channel, shaker-related subfamily, beta member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NDH6 KCNAB2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NE69 KCNAB2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P62482KCAB2_MOUSENo assigned EC number0.58940.72860.2561yesN/A
P62483KCAB2_RATNo assigned EC number0.58940.72860.2561yesN/A
Q27955KCAB2_BOVINNo assigned EC number0.58940.72860.2561yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query129
TIGR01293317 TIGR01293, Kv_beta, voltage-dependent potassium ch 4e-50
cd06660285 cd06660, Aldo_ket_red, Aldo-keto reductases (AKRs) 3e-13
pfam00248277 pfam00248, Aldo_ket_red, Aldo/keto reductase famil 2e-11
COG0667316 COG0667, Tas, Predicted oxidoreductases (related t 4e-07
COG0656280 COG0656, ARA1, Aldo/keto reductases, related to di 4e-04
PRK09912346 PRK09912, PRK09912, L-glyceraldehyde 3-phosphate r 0.003
>gnl|CDD|213602 TIGR01293, Kv_beta, voltage-dependent potassium channel beta subunit, animal Back     alignment and domain information 
 Score =  161 bits (408), Expect = 4e-50
 Identities = 56/95 (58%), Positives = 70/95 (73%), Gaps = 1/95 (1%)

Query: 1   MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
           M + INQG  MYWGTSRWS +EIMEAYS  RQFN   PI EQ EYHMF R+K E+ +PEL
Sbjct: 135 MTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPEL 194

Query: 61  YNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSS 95
           Y+KIGVG M WSP++  L+SGK +   +P Y +++
Sbjct: 195 YHKIGVGAMTWSPLACGLVSGKYDS-GIPPYSRAT 228

This model describes the conserved core region of the beta subunit of voltage-gated potassium (Kv) channels in animals. Amino-terminal regions differ substantially, in part by alternative splicing, and are not included in the model. Four beta subunits form a complex with four alpha subunit cytoplasmic (T1) regions, and the structure of the complex is solved. The beta subunit belongs to a family of NAD(P)H-dependent aldo-keto reductases, binds NADPH, and couples voltage-gated channel activity to the redox potential of the cell. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs. Length = 317
>gnl|CDD|119408 cd06660, Aldo_ket_red, Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols Back     alignment and domain information
>gnl|CDD|215817 pfam00248, Aldo_ket_red, Aldo/keto reductase family Back     alignment and domain information
>gnl|CDD|223739 COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|223729 COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only] Back     alignment and domain information
>gnl|CDD|182140 PRK09912, PRK09912, L-glyceraldehyde 3-phosphate reductase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 129
KOG1575|consensus336 99.96
COG0667316 Tas Predicted oxidoreductases (related to aryl-alc 99.92
PRK09912346 L-glyceraldehyde 3-phosphate reductase; Provisiona 99.91
TIGR01293317 Kv_beta voltage-dependent potassium channel beta s 99.91
PRK10625346 tas putative aldo-keto reductase; Provisional 99.91
COG0656280 ARA1 Aldo/keto reductases, related to diketogulona 99.85
PF00248283 Aldo_ket_red: Aldo/keto reductase family; InterPro 99.83
PRK14863292 bifunctional regulator KidO; Provisional 99.82
PLN02587314 L-galactose dehydrogenase 99.81
COG4989298 Predicted oxidoreductase [General function predict 99.8
cd06660285 Aldo_ket_red Aldo-keto reductases (AKRs) are a sup 99.78
PRK11172267 dkgB 2,5-diketo-D-gluconate reductase B; Provision 99.78
KOG1577|consensus300 99.73
PRK11565275 dkgA 2,5-diketo-D-gluconate reductase A; Provision 99.71
PRK10376290 putative oxidoreductase; Provisional 99.7
COG1453 391 Predicted oxidoreductases of the aldo/keto reducta 99.31
KOG1576|consensus342 99.26
KOG3023|consensus285 97.88
COG1140 513 NarY Nitrate reductase beta subunit [Energy produc 84.04
PF07021193 MetW: Methionine biosynthesis protein MetW; InterP 83.06
>KOG1575|consensus Back     alignment and domain information 
Probab=99.96  E-value=6.9e-29  Score=186.19  Aligned_cols=121  Identities=31%  Similarity=0.530  Sum_probs=100.3

Q ss_pred             ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380           1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS   80 (129)
Q Consensus         1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt   80 (129)
                      |.+++++|||||||+|+|++++|.+|..++.    .+++++|++||+++|+++|.+++++|+++||++++||||++|+||
T Consensus       150 L~~lve~Gki~yiGlSe~sa~~I~~a~~~~~----~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Lt  225 (336)
T KOG1575|consen  150 LTDLVEQGKIRYWGLSEWSAEEIREAHAVAP----IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLT  225 (336)
T ss_pred             HHHHHhcCceEEEEeccCCHHHHHHHHHhcC----CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceec
Confidence            5689999999999999999999999999875    679999999999999998888999999999999999999999999


Q ss_pred             CCccCCC-CCCCCCc---ccccccc-----CHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380          81 GKIEEFT-VPVYPKS---SKLVPKL-----NAAVMGEVERVLDNKPARPPMVSTLAL  128 (129)
Q Consensus        81 gk~~~~~-~~~~~~~---~~~~~~~-----~~~~~~~l~~la~~~~~~~~~la~~AL  128 (129)
                      |||.... .+.+...   ....+.+     +..+++++.++|+++|+|   ++|+||
T Consensus       226 gk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T---~~qlAL  279 (336)
T KOG1575|consen  226 GKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCT---VPQLAL  279 (336)
T ss_pred             cCcccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCC---HHHHHH
Confidence            9998843 3433221   1222332     447889999999999976   455555

>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion] Back     alignment and domain information
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional Back     alignment and domain information
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal Back     alignment and domain information
>PRK10625 tas putative aldo-keto reductase; Provisional Back     alignment and domain information
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only] Back     alignment and domain information
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others [] Back     alignment and domain information
>PRK14863 bifunctional regulator KidO; Provisional Back     alignment and domain information
>PLN02587 L-galactose dehydrogenase Back     alignment and domain information
>COG4989 Predicted oxidoreductase [General function prediction only] Back     alignment and domain information
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols Back     alignment and domain information
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional Back     alignment and domain information
>KOG1577|consensus Back     alignment and domain information
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional Back     alignment and domain information
>PRK10376 putative oxidoreductase; Provisional Back     alignment and domain information
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only] Back     alignment and domain information
>KOG1576|consensus Back     alignment and domain information
>KOG3023|consensus Back     alignment and domain information
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion] Back     alignment and domain information
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query129
1zsx_A347 Crystal Structure Of Human Potassium Channel Kv Bet 2e-29
3eb3_A327 Voltage-Dependent K+ Channel Beta Subunit (W121a) I 2e-29
2a79_A333 Mammalian Shaker Kv1.2 Potassium Channel- Beta Subu 3e-29
3lut_A367 A Structural Model For The Full-Length Shaker Potas 3e-29
1exb_A332 Structure Of The Cytoplasmic Beta Subunit-T1 Assemb 3e-29
3eau_A327 Voltage-Dependent K+ Channel Beta Subunit In Comple 3e-29
1qrq_A325 Structure Of A Voltage-Dependent K+ Channel Beta Su 3e-29
3eb4_A327 Voltage-Dependent K+ Channel Beta Subunit (I211r) I 2e-28
3uyi_A337 Crystal Structure Of Perakine Reductase, Founder Me 2e-04
3n6q_A346 Crystal Structure Of Yghz From E. Coli Length = 346 7e-04
4aub_A366 The Complex Structure Of The Bacterial Aldo-Keto Re 8e-04
>pdb|1ZSX|A Chain A, Crystal Structure Of Human Potassium Channel Kv Beta-Subunit (Kcnab2) Length = 347 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (310), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/95 (58%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 1   MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
           M H INQG  MYWGTSRWS +EIMEAYS  RQFN   PI EQ EYHMF R+K E+ +PEL
Sbjct: 160 MTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPEL 219
Query: 61  YNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSS 95
           ++KIGVG M WSP++  ++SGK +   +P Y ++S
Sbjct: 220 FHKIGVGAMTWSPLACGIVSGKYDS-GIPPYSRAS 253
>pdb|3EB3|A Chain A, Voltage-Dependent K+ Channel Beta Subunit (W121a) In Complex With Cortisone Length = 327 Back     alignment and structure
>pdb|2A79|A Chain A, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit Complex Length = 333 Back     alignment and structure
>pdb|3LUT|A Chain A, A Structural Model For The Full-Length Shaker Potassium Channel Kv1.2 Length = 367 Back     alignment and structure
>pdb|1EXB|A Chain A, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of Voltage-Dependent K Channels Length = 332 Back     alignment and structure
>pdb|3EAU|A Chain A, Voltage-Dependent K+ Channel Beta Subunit In Complex With Cortisone Length = 327 Back     alignment and structure
>pdb|1QRQ|A Chain A, Structure Of A Voltage-Dependent K+ Channel Beta Subunit Length = 325 Back     alignment and structure
>pdb|3EB4|A Chain A, Voltage-Dependent K+ Channel Beta Subunit (I211r) In Complex With Cortisone Length = 327 Back     alignment and structure
>pdb|3UYI|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of A Novel Akr Subfamily With Unique Conformational Changes During Nadph Binding Length = 337 Back     alignment and structure
>pdb|3N6Q|A Chain A, Crystal Structure Of Yghz From E. Coli Length = 346 Back     alignment and structure
>pdb|4AUB|A Chain A, The Complex Structure Of The Bacterial Aldo-Keto Reductase Akr14a1 With Nadp And Citrate Length = 366 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query129
3lut_A367 Voltage-gated potassium channel subunit beta-2; vo 1e-37
3eau_A327 Voltage-gated potassium channel subunit beta-2; kv 4e-36
3n6q_A346 YGHZ aldo-keto reductase; TIM barrel, oxidoreducta 4e-26
3erp_A353 Putative oxidoreductase; funded by the national in 2e-23
1gve_A327 Aflatoxin B1 aldehyde reductase member 3; oxidored 4e-12
2bp1_A360 Aflatoxin B1 aldehyde reductase member 2; oxidored 1e-10
1lqa_A346 TAS protein; TIM barrel, structure 2 function proj 9e-10
1ynp_A317 Oxidoreductase, AKR11C1; aldo-keto reductase, NADP 3e-08
1pz1_A333 GSP69, general stress protein 69; beta-alpha barre 6e-08
1pyf_A312 IOLS protein; beta-alpha barrel, aldo-keto reducta 7e-07
3v0s_A337 Perakine reductase; AKR superfamily, oxidoreductas 9e-07
3n2t_A348 Putative oxidoreductase; aldo/keto reductase super 1e-05
1ur3_M319 Hypothetical oxidoreductase YDHF; NADP binding, al 4e-04
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus} Length = 367 Back     alignment and structure
 Score =  130 bits (328), Expect = 1e-37
 Identities = 53/82 (64%), Positives = 63/82 (76%)

Query: 1   MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
           M H INQG  MYWGTSRWS +EIMEAYS  RQFN   PI EQ EYHMF R+K E+ +PEL
Sbjct: 173 MTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPEL 232

Query: 61  YNKIGVGMMAWSPISMALISGK 82
           ++KIGVG M WSP++  ++SGK
Sbjct: 233 FHKIGVGAMTWSPLACGIVSGK 254
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A* Length = 327 Back     alignment and structure
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} Length = 346 Back     alignment and structure
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp} Length = 353 Back     alignment and structure
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A* Length = 327 Back     alignment and structure
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1 Length = 346 Back     alignment and structure
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A* Length = 317 Back     alignment and structure
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1 Length = 333 Back     alignment and structure
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A* Length = 312 Back     alignment and structure
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A* Length = 337 Back     alignment and structure
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} Length = 348 Back     alignment and structure
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A* Length = 319 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query129
3n2t_A348 Putative oxidoreductase; aldo/keto reductase super 99.94
3eau_A327 Voltage-gated potassium channel subunit beta-2; kv 99.94
1lqa_A346 TAS protein; TIM barrel, structure 2 function proj 99.94
3erp_A353 Putative oxidoreductase; funded by the national in 99.93
3lut_A367 Voltage-gated potassium channel subunit beta-2; vo 99.93
1gve_A327 Aflatoxin B1 aldehyde reductase member 3; oxidored 99.93
3n6q_A346 YGHZ aldo-keto reductase; TIM barrel, oxidoreducta 99.93
1pyf_A312 IOLS protein; beta-alpha barrel, aldo-keto reducta 99.93
1pz1_A333 GSP69, general stress protein 69; beta-alpha barre 99.93
2bp1_A360 Aflatoxin B1 aldehyde reductase member 2; oxidored 99.92
3v0s_A337 Perakine reductase; AKR superfamily, oxidoreductas 99.91
1ynp_A317 Oxidoreductase, AKR11C1; aldo-keto reductase, NADP 99.88
1ur3_M319 Hypothetical oxidoreductase YDHF; NADP binding, al 99.86
3krb_A334 Aldose reductase; ssgcid, SBRI, emerald biostructu 99.86
1afs_A323 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; 99.84
1qwk_A317 Aldose reductase, aldo-keto reductase family 1 mem 99.84
3buv_A326 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reduc 99.84
1s1p_A331 Aldo-keto reductase family 1 member C3; TIM-barrel 99.84
3f7j_A276 YVGN protein; aldo-keto reductase, oxidoreductase; 99.84
3b3e_A310 YVGN protein; aldo-keto reductase, oxidoreductase; 99.83
3o0k_A283 Aldo/keto reductase; ssgcid, ALS collaborative cry 99.83
4f40_A288 Prostaglandin F2-alpha synthase/D-arabinose dehyd; 99.83
4gac_A324 Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldhe 99.83
2wzm_A283 Aldo-keto reductase; oxidoreductase; HET: NA7; 1.6 99.82
1hw6_A278 2,5-diketo-D-gluconic acid reductase; aldo-keto re 99.82
1us0_A316 Aldose reductase; oxidoreductase, NADP, IDD594; HE 99.82
1vbj_A281 Prostaglandin F synthase; TIM barrel, oxidoreducta 99.82
1mzr_A296 2,5-diketo-D-gluconate reductase A; alpha/beta-bar 99.82
3up8_A298 Putative 2,5-diketo-D-gluconic acid reductase B; n 99.81
4gie_A290 Prostaglandin F synthase; structural genomics, nia 99.81
1vp5_A298 2,5-diketo-D-gluconic acid reductase; TM1009, stru 99.81
1zgd_A312 Chalcone reductase; polyketide, deoxychalcone, iso 99.81
3b3d_A314 YTBE protein, putative morphine dehydrogenase; ald 99.81
4exb_A292 Putative uncharacterized protein; aldo-keto reduct 99.81
3ln3_A324 Dihydrodiol dehydrogenase; putative reductase, str 99.8
1mi3_A322 Xylose reductase, XR; aldo-keto reductase, beta-al 99.79
3h7r_A331 Aldo-keto reductase; stress response, NADP, drough 99.79
2bgs_A344 Aldose reductase; holoenzyme, aldo/keto reductase, 99.79
3h7u_A335 Aldo-keto reductase; stress response, NADP, drough 99.79
3o3r_A316 Aldo-keto reductase family 1, member B7; aldose re 99.78
3cf4_A 807 Acetyl-COA decarboxylase/synthase alpha subunit; m 92.48
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0 Back     alignment and structure
Probab=99.94  E-value=2.3e-26  Score=174.04  Aligned_cols=118  Identities=20%  Similarity=0.221  Sum_probs=97.1

Q ss_pred             ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380           1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS   80 (129)
Q Consensus         1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt   80 (129)
                      |++|+++||||+||+|||++++++++.+.      .+|+++|++||++++.. +.+++++|+++||++++||||++|+|+
T Consensus       161 l~~l~~~Gkir~iGvSn~~~~~l~~~~~~------~~~~~~Q~~~nl~~~~~-e~~l~~~~~~~gi~v~a~spL~~G~Lt  233 (348)
T 3n2t_A          161 LQKLHQDGKIRALGVSNFSPEQMDIFREV------APLATIQPPLNLFERTI-EKDILPYAEKHNAVVLAYGALCRGLLT  233 (348)
T ss_dssp             HHHHHHTTSEEEEEEESCCHHHHHHHHHH------SCCCEEECBCBTTBCGG-GGTHHHHHHHHTCEEEEBCTTGGGGGG
T ss_pred             HHHHHHhCcceEEecCCCCHHHHHHHHHh------CCccEEEeeecCccCch-HHHHHHHHHHcCCeEEEeecccCcccc
Confidence            57899999999999999999999999987      37999999999999986 778999999999999999999999999


Q ss_pred             CCccCCCCCCCCCccccccccCH-------HHHHHHHHHHhhCCCCcchhhhccc
Q psy5380          81 GKIEEFTVPVYPKSSKLVPKLNA-------AVMGEVERVLDNKPARPPMVSTLAL  128 (129)
Q Consensus        81 gk~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~la~~~~~~~~~la~~AL  128 (129)
                      |+|.....+...+.+...+.+.+       +.++.++++|+++++++   +|+||
T Consensus       234 g~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~iA~~~g~t~---aqvaL  285 (348)
T 3n2t_A          234 GKMNRDTTFPKDDLRSNDPKFQKPNFEKYLAAMDEFEKLAEKRGKSV---MAFAV  285 (348)
T ss_dssp             TCCCTTCCCCTTSGGGGCGGGSTTHHHHHHHHHHHHHHHHHHTTCCH---HHHHH
T ss_pred             CCccCCCCCCCcchhhcccccchhhHHHHHHHHHHHHHHHHHhCCCH---HHHHH
Confidence            99987544444444433333322       45678899999999875   55554
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A* Back     alignment and structure
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1 Back     alignment and structure
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp} Back     alignment and structure
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus} Back     alignment and structure
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A* Back     alignment and structure
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A* Back     alignment and structure
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A* Back     alignment and structure
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1 Back     alignment and structure
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A* Back     alignment and structure
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A* Back     alignment and structure
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A* Back     alignment and structure
>3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, oxidoreductase, S genomics; HET: NAP; 1.75A {Giardia lamblia} Back     alignment and structure
>1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 1lwi_A* Back     alignment and structure
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961; structural genomics, PSI, protein structure initiative; 1.60A {Caenorhabditis elegans} SCOP: c.1.7.1 Back     alignment and structure
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic tetrad, hepes, NADP, bIle catabolism, disease mutation, lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens} PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A* 3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A* Back     alignment and structure
>1s1p_A Aldo-keto reductase family 1 member C3; TIM-barrel, oxidoreductase; HET: NAP; 1.20A {Homo sapiens} SCOP: c.1.7.1 PDB: 1s1r_A* 1s2a_A* 1s2c_A* 3uwe_A* 3r58_A* 3r43_A* 3r7m_A* 3r6i_A* 3r8h_A* 3r94_A* 3r8g_A* 1zq5_A* 1ry8_A* 1xf0_A* 1ry0_A* 2f38_A* 2fgb_A* 4dbs_A* 4dbu_A* 3gug_A* ... Back     alignment and structure
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A* Back     alignment and structure
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar} Back     alignment and structure
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CIT; 1.60A {Leishmania major} PDB: 4g5d_A* Back     alignment and structure
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A* Back     alignment and structure
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium smegmatis} PDB: 2wzt_A Back     alignment and structure
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A* Back     alignment and structure
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT; 0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A* 1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A* 2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A* 2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ... Back     alignment and structure
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT; 2.10A {Trypanosoma brucei} Back     alignment and structure
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel, aldo-ketoreductase, NADPH dependant, BACT targets at IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP: c.1.7.1 Back     alignment and structure
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti} Back     alignment and structure
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A* Back     alignment and structure
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics, joint center for structural genomics, PSI, protein structure initiative; HET: NAP; 2.40A {Thermotoga maritima} SCOP: c.1.7.1 Back     alignment and structure
>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid, biosynthesis, plant protein; HET: NAP; 1.70A {Medicago sativa} Back     alignment and structure
>3b3d_A YTBE protein, putative morphine dehydrogenase; aldo-keto reductase, oxidoreductase; 2.30A {Bacillus subtilis} Back     alignment and structure
>4exb_A Putative uncharacterized protein; aldo-keto reductase, NADP+ binding, oxidoreducta; 2.75A {Pseudomonas aeruginosa} PDB: 4exa_A Back     alignment and structure
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1 Back     alignment and structure
>1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel, dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis} SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A* 1sm9_A* 1r38_A* 1z9a_A* Back     alignment and structure
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana} Back     alignment and structure
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A* Back     alignment and structure
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana} Back     alignment and structure
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 3qkz_A* Back     alignment and structure
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 129
d1lqaa_346 c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 4e-08
d3eaua1326 c.1.7.1 (A:36-361) Voltage-dependent K+ channel be 3e-04
>d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]} Length = 346 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: NAD(P)-linked oxidoreductase
family: Aldo-keto reductases (NADP)
domain: Tas protein
species: Escherichia coli [TaxId: 562]

 Score = 48.0 bits (113), Expect = 4e-08
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 1   MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
           +      G I Y G S  +   +M       + +    +  Q  Y +  R   E+ + E+
Sbjct: 164 LAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRS-FEVGLAEV 222

Query: 61  YNKIGVGMMAWSPISMALISGKIEEFTVP 89
               GV ++A+S +    ++GK      P
Sbjct: 223 SQYEGVELLAYSCLGFGTLTGKYLNGAKP 251
>d3eaua1 c.1.7.1 (A:36-361) Voltage-dependent K+ channel beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 326 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query129
d1lqaa_346 Tas protein {Escherichia coli [TaxId: 562]} 99.91
d1gvea_324 Aflatoxin aldehyde reductase (akr7a1) {Rat (Rattus 99.88
d1pyfa_311 Putative oxidoreductase IolS {Bacillus subtilis [T 99.86
d1pz1a_333 Putative oxidoreductase YhdN {Bacillus subtilis [T 99.83
d3eaua1326 Voltage-dependent K+ channel beta subunit {Rat (Ra 99.7
d1afsa_319 3-alpha-hydroxysteroid dehydrogenase {Rat (Rattus 99.7
d1hqta_324 Aldose reductase (aldehyde reductase) {Pig (Sus sc 99.69
d1hw6a_262 2,5-diketo-D-gluconic acid reductase A {Corynebact 99.69
d1qwka_312 Hypothetical protein C07D8.6 {Nematode (Caenorhabd 99.68
d1us0a_314 Aldose reductase (aldehyde reductase) {Human (Homo 99.68
d1mi3a_319 Xylose reductase {Fungi (Candida tenuis) [TaxId: 4 99.67
d1s1pa_315 Prostaglandin d2 11-ketoreductase (akr1c3) {Human 99.66
d1frba_315 FR-1 (fibroblast growth factor-induced) protein {M 99.63
d1mzra_274 2,5-diketo-D-gluconic acid reductase A {Escherichi 99.57
d1ur3m_298 Hypothetical oxidoreductase YdhF {Escherichia coli 99.53
d1vp5a_284 2,5-diketo-D-gluconic acid reductase A {Thermotoga 99.48
d1tg7a5 354 Beta-galactosidase LacA, N-terminal domain {Penici 86.22
d2cpga_43 Transcriptional repressor CopG {Streptococcus agal 82.21
>d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: NAD(P)-linked oxidoreductase
family: Aldo-keto reductases (NADP)
domain: Tas protein
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.1e-24  Score=162.00  Aligned_cols=122  Identities=16%  Similarity=0.225  Sum_probs=100.1

Q ss_pred             ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380           1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS   80 (129)
Q Consensus         1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt   80 (129)
                      |++|+++||||+||+|||+++++.++.++....++.+++++|++||++++.. +.+++++|+++||++++|+||++|+|+
T Consensus       164 l~~l~~~G~ir~iGvS~~~~~~~~~~~~~~~~~~~~~~~~~q~~yn~~~~~~-e~~~~~~~~~~~i~v~a~~pl~~G~Lt  242 (346)
T d1lqaa_         164 LAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSF-EVGLAEVSQYEGVELLAYSCLGFGTLT  242 (346)
T ss_dssp             HHHHHHTTSEEEEEEESCCHHHHHHHHHHHHHHTCCCCCEEEEECBTTBCTH-HHHHHHHHHHHCCEEEEECTTGGGGGG
T ss_pred             HHHHHhCCCeeEEEEeccCHHHHHHHHHHhhhcCCCCeEEEeCCCccccchH-HHHHHHHHHHhCCeEEEeccccccccc
Confidence            4689999999999999999999999999999889889999999999999986 778999999999999999999999999


Q ss_pred             CCccCCCCCCCCCcc--c-c---ccccCHHHHHHHHHHHhhCCCCcchh
Q psy5380          81 GKIEEFTVPVYPKSS--K-L---VPKLNAAVMGEVERVLDNKPARPPMV  123 (129)
Q Consensus        81 gk~~~~~~~~~~~~~--~-~---~~~~~~~~~~~l~~la~~~~~~~~~l  123 (129)
                      |+|.....|.....+  . +   ......+.++.+.++|++++.++.++
T Consensus       243 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~s~aq~  291 (346)
T d1lqaa_         243 GKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQM  291 (346)
T ss_dssp             TTTGGGCCCTTCHHHHCTTCCTTCSHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             CCccCCCCCccccccccchhhhhhHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            999885444443211  1 1   11123356777888999998865443
>d1gvea_ c.1.7.1 (A:) Aflatoxin aldehyde reductase (akr7a1) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1pyfa_ c.1.7.1 (A:) Putative oxidoreductase IolS {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pz1a_ c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3eaua1 c.1.7.1 (A:36-361) Voltage-dependent K+ channel beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1afsa_ c.1.7.1 (A:) 3-alpha-hydroxysteroid dehydrogenase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hqta_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1hw6a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Corynebacterium sp. [TaxId: 1720]} Back     information, alignment and structure
>d1qwka_ c.1.7.1 (A:) Hypothetical protein C07D8.6 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1us0a_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mi3a_ c.1.7.1 (A:) Xylose reductase {Fungi (Candida tenuis) [TaxId: 45596]} Back     information, alignment and structure
>d1s1pa_ c.1.7.1 (A:) Prostaglandin d2 11-ketoreductase (akr1c3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1frba_ c.1.7.1 (A:) FR-1 (fibroblast growth factor-induced) protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mzra_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ur3m_ c.1.7.1 (M:) Hypothetical oxidoreductase YdhF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vp5a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]} Back     information, alignment and structure