Psyllid ID: psy5453

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MDCKIKISEDINNIPLADDDPQAIISDEVESSQNSEGPIRADHSLDSISSSFTNSSSSPGRNSLDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQSTSPKSGKK
Secondary Structure (PSIPRED)
ccccccHHHccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mdckikisedinnipladddpqaiisdevessqnsegpiradhsldsisssftnsssspgrnsldpdvspdeQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASsvfqstspksgkk
Flexible Loop (DISEMBL)
MDCKIKISedinnipladddPQAIISDEVESSQNSEGPIRADHSLDSISSSftnsssspgrnsLDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDsvkeenlrlrseNQVLGQYIENLMsassvfqstspksgkk
Low Complexity Region (SEG)
MDCKIKISEDINNIPLADDDPQAIISDEVESSQNSEGPIRADHsldsisssftnsssspgrnsLDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQSTSPKSGKK
Disordered region (IsUnstruct)
********************************************************************************************************************YI********************
Disordered Region (DISOPRED)
************NIPLAD************************************************************LISQVLELQNTLDDLSQRV**************QVLGQYIENLMS***************
Disordered Region (DISEMBL)
MDCKIKISEDINNIPLADDDPQAIISD***********IRADHSLDSIS***************************ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASS************
Disordered Region (DISPRO)
**CKIKISEDINNIPLADDDPQAIISD****************************************VSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSA**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDCKIKISEDINNIPLADDDPQAIISDEVESSQNSEGPIRADHSLDSISSSFTNSSSSPGRNSLDPDVSPDEQEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNQVLGQYIENLMSASSVFQSTSPKSGKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q08BG7	119	Short coiled-coil protein	yes	N/A	0.485	0.563	0.805	2e-24
Q5XJK1	76	Short coiled-coil protein	no	N/A	0.543	0.986	0.736	5e-24
Q78YZ6	125	Short coiled-coil protein	no	N/A	0.485	0.536	0.791	8e-24
Q5RJZ6	122	Short coiled-coil protein	yes	N/A	0.695	0.786	0.607	9e-24
A8NJZ7	122	Short coiled-coil protein	N/A	N/A	0.471	0.532	0.815	2e-23
Q9UIL1	159	Short coiled-coil protein	no	N/A	0.485	0.421	0.791	5e-23

>sp|Q08BG7|SCOCA_DANRE Short coiled-coil protein A OS=Danio rerio GN=scoca PE=3 SV=1

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/67 (80%), Positives = 62/67 (92%)

Query: 72  EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQST 131
           EQEEK RLI+QVLELQ+TL+DLS RVD+VKEENL+L+SENQVLGQYIENLMSASSVFQ+T
Sbjct: 53  EQEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTT 112

Query: 132 SPKSGKK 138
             KS +K
Sbjct: 113 DTKSKRK 119

Danio rerio (taxid: 7955)

>sp|Q5XJK1|SCOCB_DANRE Short coiled-coil protein B OS=Danio rerio GN=scocb PE=3 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 56/76 (73%), Positives = 65/76 (85%), Gaps = 1/76 (1%)

Query: 64  LDPDVSPD-EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122
           +D D+    E EEK RLI+QVLELQNTL+DLS RVD+VKEENL+L+SENQVLGQYIENLM
Sbjct: 1   MDGDIENQVELEEKTRLINQVLELQNTLEDLSARVDAVKEENLKLKSENQVLGQYIENLM 60

Query: 123 SASSVFQSTSPKSGKK 138
           SASSVFQ+T  KS +K
Sbjct: 61  SASSVFQTTDSKSKRK 76

Danio rerio (taxid: 7955)

>sp|Q78YZ6|SCOC_MOUSE Short coiled-coil protein OS=Mus musculus GN=Scoc PE=2 SV=1

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 61/67 (91%)

Query: 72  EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQST 131
           E EEK RLI+QVLELQ+TL+DLS RVD+VKEENL+L+SENQVLGQYIENLMSASSVFQ+T
Sbjct: 59  ELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTT 118

Query: 132 SPKSGKK 138
             KS +K
Sbjct: 119 DTKSKRK 125

Mus musculus (taxid: 10090)

>sp|Q5RJZ6|SCOC_RAT Short coiled-coil protein OS=Rattus norvegicus GN=Scoc PE=2 SV=1

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 72/102 (70%), Gaps = 6/102 (5%)

Query: 41  ADHSLDSISSSFTNSSSSPGRNSLDPDVSPDEQ----EEKARLISQVLELQNTLDDLSQR 96
            DHSL S+ S        P   + D D    E     EEK RLI+QVLELQ+TL+DLS R
Sbjct: 23  TDHSLKSLHSG--AERLFPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSAR 80

Query: 97  VDSVKEENLRLRSENQVLGQYIENLMSASSVFQSTSPKSGKK 138
           VD+VKEENL+L+SENQVLGQYIENLMSASSVFQ+T  KS +K
Sbjct: 81  VDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122

Rattus norvegicus (taxid: 10116)

>sp|A8NJZ7|SCOC_BRUMA Short coiled-coil protein homolog OS=Brugia malayi GN=Bm1_04115 PE=3 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 61/65 (93%)

Query: 71  DEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQS 130
           D+QEEKARLISQVLELQNTLDDLSQRVDSVKEE+L+LRSENQVLGQYI+NLM++S+VFQ 
Sbjct: 54  DDQEEKARLISQVLELQNTLDDLSQRVDSVKEESLKLRSENQVLGQYIQNLMASSAVFQP 113

Query: 131 TSPKS 135
              K+
Sbjct: 114 AQSKA 118

Brugia malayi (taxid: 6279)

>sp|Q9UIL1|SCOC_HUMAN Short coiled-coil protein OS=Homo sapiens GN=SCOC PE=1 SV=2

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 61/67 (91%)

Query: 72  EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQST 131
           E EEK RLI+QVLELQ+TL+DLS RVD+VKEENL+L+SENQVLGQYIENLMSASSVFQ+T
Sbjct: 93  ELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTT 152

Query: 132 SPKSGKK 138
             KS +K
Sbjct: 153 DTKSKRK 159

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
242023499	139	conserved hypothetical protein [Pediculu	0.963	0.956	0.785	5e-50
91093539	140	PREDICTED: similar to AGAP001277-PA [Tri	0.963	0.95	0.772	1e-48
340709629	140	PREDICTED: short coiled-coil protein B-l	0.949	0.935	0.725	1e-44
193575655	136	PREDICTED: short coiled-coil protein A-l	0.913	0.926	0.763	1e-44
48118672	140	PREDICTED: short coiled-coil protein B-l	0.949	0.935	0.725	1e-44
332028966	140	Short coiled-coil protein B [Acromyrmex	0.949	0.935	0.711	4e-44
332373254	137	unknown [Dendroctonus ponderosae]	0.963	0.970	0.739	4e-44
322794349	138	hypothetical protein SINV_12390 [Solenop	0.942	0.942	0.723	4e-44
383862399	140	PREDICTED: short coiled-coil protein B-l	0.949	0.935	0.711	6e-43
156544877	142	PREDICTED: short coiled-coil protein B-l	0.942	0.915	0.718	8e-43

>gi|242023499|ref|XP_002432170.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517558|gb|EEB19432.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 106/135 (78%), Positives = 117/135 (86%), Gaps = 2/135 (1%)

Query: 6   KISEDINNIPLADDDPQAIISDEVESSQNSE--GPIRADHSLDSISSSFTNSSSSPGRNS 63
           K  +D+NNIPLADDDPQA+I DE+E+  NS     +    SL+S+ SSFTN SSSPG NS
Sbjct: 5   KSQDDLNNIPLADDDPQAVIQDEIENGDNSNVTHSMNRQRSLESLPSSFTNGSSSPGPNS 64

Query: 64  LDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123
           LDPD+SPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENL+LRSENQVLGQYIENLMS
Sbjct: 65  LDPDISPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 124

Query: 124 ASSVFQSTSPKSGKK 138
           ASSVFQSTSP+S KK
Sbjct: 125 ASSVFQSTSPRSKKK 139

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093539|ref|XP_966844.1| PREDICTED: similar to AGAP001277-PA [Tribolium castaneum] gi|270015586|gb|EFA12034.1| hypothetical protein TcasGA2_TC001451 [Tribolium castaneum]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/136 (77%), Positives = 115/136 (84%), Gaps = 3/136 (2%)

Query: 6   KISEDINNIPLADDDPQAIISDEVESSQNSEG---PIRADHSLDSISSSFTNSSSSPGRN 62
           K+ +DINNIPLADDDPQ II+DE E +  S+G    +    S+DSI S+FTN SSSP  N
Sbjct: 5   KLQDDINNIPLADDDPQVIINDEPEQNSISDGNSSSMMHGRSMDSIQSTFTNGSSSPQHN 64

Query: 63  SLDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122
           SL+PD SPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENL+LRSENQVLGQYIENLM
Sbjct: 65  SLEPDTSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 124

Query: 123 SASSVFQSTSPKSGKK 138
           SASSVFQSTSPK  KK
Sbjct: 125 SASSVFQSTSPKIKKK 140

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709629|ref|XP_003393406.1| PREDICTED: short coiled-coil protein B-like [Bombus terrestris] gi|350422443|ref|XP_003493166.1| PREDICTED: short coiled-coil protein B-like [Bombus impatiens]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/135 (72%), Positives = 115/135 (85%), Gaps = 4/135 (2%)

Query: 6   KISEDINNIPLADDDPQAIISDE--VESSQNSEGPIRADHSLDSISSSFTNSSSSPGRNS 63
           K+ +D+N+IPLADDDPQ II +E  +++S +    + + HS+DSI S+FTN S SP  NS
Sbjct: 8   KLLDDMNSIPLADDDPQVIIPEEEILDNSCHISDALGSGHSMDSIPSTFTNGSCSP--NS 65

Query: 64  LDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123
           LDPD+SPDEQEEKARLI+QVLELQNTLDDLSQRVDSVKEENL+LRSENQVL QYIENLMS
Sbjct: 66  LDPDISPDEQEEKARLIAQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLSQYIENLMS 125

Query: 124 ASSVFQSTSPKSGKK 138
           ASSVFQSTSP + KK
Sbjct: 126 ASSVFQSTSPNTKKK 140

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193575655|ref|XP_001947116.1| PREDICTED: short coiled-coil protein A-like [Acyrthosiphon pisum]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 112/127 (88%), Gaps = 1/127 (0%)

Query: 12  NNIPLADDDPQAIISDEVESSQNSEGPIRADHSLDSISSSFTNSSSSPGRNSLDPDVSPD 71
           ++IPLADDDPQAII D+ + SQ S+  +R + S+DS+ SSFTN S+SP RNSLD D+SPD
Sbjct: 11  DSIPLADDDPQAIIHDDQDISQCSDVIVR-NQSMDSLQSSFTNGSNSPSRNSLDRDMSPD 69

Query: 72  EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQST 131
           E EEKARLI+QVLELQNTLDDLSQRVDSVKEENL+LRSENQVLGQYIENLMSASSVFQ+T
Sbjct: 70  ELEEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQTT 129

Query: 132 SPKSGKK 138
           SP+  KK
Sbjct: 130 SPRVKKK 136

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48118672|ref|XP_393204.1| PREDICTED: short coiled-coil protein B-like [Apis mellifera] gi|380022237|ref|XP_003694958.1| PREDICTED: short coiled-coil protein B-like [Apis florea]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/135 (72%), Positives = 115/135 (85%), Gaps = 4/135 (2%)

Query: 6   KISEDINNIPLADDDPQAIISDE--VESSQNSEGPIRADHSLDSISSSFTNSSSSPGRNS 63
           K+ +D+N+IPLADDDPQ II +E  +++S +    + + HS+DSI S+FTN S SP  NS
Sbjct: 8   KLLDDMNSIPLADDDPQVIIPEEEVLDNSCHISDALGSGHSMDSIPSTFTNGSCSP--NS 65

Query: 64  LDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123
           LDPD+SPDEQEEKARLI+QVLELQNTLDDLSQRVDSVKEENL+LRSENQVL QYIENLMS
Sbjct: 66  LDPDISPDEQEEKARLIAQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLSQYIENLMS 125

Query: 124 ASSVFQSTSPKSGKK 138
           ASSVFQSTSP + KK
Sbjct: 126 ASSVFQSTSPNTKKK 140

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028966|gb|EGI68982.1| Short coiled-coil protein B [Acromyrmex echinatior]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 96/135 (71%), Positives = 114/135 (84%), Gaps = 4/135 (2%)

Query: 6   KISEDINNIPLADDDPQAIISDE--VESSQNSEGPIRADHSLDSISSSFTNSSSSPGRNS 63
           K+ +D+N+IPLADDDPQ II +E  ++++ +   P+    S+DSI S+FTN S SP  NS
Sbjct: 8   KLQDDMNSIPLADDDPQVIIPEEEILDNASHMSDPLGRGRSMDSIPSTFTNGSCSP--NS 65

Query: 64  LDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123
           LDPD++PDEQEEKARLI+QVLELQNTLDDLSQRVDSVKEENL+LRSENQVL QYIENLMS
Sbjct: 66  LDPDINPDEQEEKARLIAQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLSQYIENLMS 125

Query: 124 ASSVFQSTSPKSGKK 138
           ASSVFQSTSP + KK
Sbjct: 126 ASSVFQSTSPNTKKK 140

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373254|gb|AEE61768.1| unknown [Dendroctonus ponderosae]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/138 (73%), Positives = 110/138 (79%), Gaps = 5/138 (3%)

Query: 5   IKISEDINNIPLADDDPQAIISDEVE----SSQNSEGPIRADHSLDSISSSFTNSSSSPG 60
           + +S+  + IPLADDDPQ II D+ E    S  NS   I    S+DSI S+FTN SSSP 
Sbjct: 1   MAVSKIHDEIPLADDDPQVIIHDDPEPNSMSEANSSSMIHG-RSMDSIQSTFTNGSSSPQ 59

Query: 61  RNSLDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIEN 120
            NSLD D SPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENL+LRSENQVLGQYIEN
Sbjct: 60  HNSLDQDASPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIEN 119

Query: 121 LMSASSVFQSTSPKSGKK 138
           LMSASSVFQSTSPK  KK
Sbjct: 120 LMSASSVFQSTSPKIKKK 137

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794349|gb|EFZ17457.1| hypothetical protein SINV_12390 [Solenopsis invicta]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 97/134 (72%), Positives = 113/134 (84%), Gaps = 4/134 (2%)

Query: 6   KISEDINNIPLADDDPQAIISDE--VESSQNSEGPIRADHSLDSISSSFTNSSSSPGRNS 63
           K+ +D+N+IPLADDDPQ II +E  ++S+ +   P+    S+DSI S+FTN S SP  NS
Sbjct: 7   KLQDDMNSIPLADDDPQVIIPEEEILDSASHISDPLGRGRSMDSIPSTFTNGSCSP--NS 64

Query: 64  LDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123
           LDPD+SPDEQEEKARLI+QVLELQNTLDDLSQRVDSVKEENL+LRSENQVL QYIENLMS
Sbjct: 65  LDPDISPDEQEEKARLIAQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLSQYIENLMS 124

Query: 124 ASSVFQSTSPKSGK 137
           ASSVFQSTSP + K
Sbjct: 125 ASSVFQSTSPNTKK 138

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862399|ref|XP_003706671.1| PREDICTED: short coiled-coil protein B-like [Megachile rotundata]

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 96/135 (71%), Positives = 112/135 (82%), Gaps = 4/135 (2%)

Query: 6   KISEDINNIPLADDDPQAIISDE--VESSQNSEGPIRADHSLDSISSSFTNSSSSPGRNS 63
           K+ +D+N+IPLADDDPQ II +E  +++S +    +    S+DSI S+FTN S SP  NS
Sbjct: 8   KLQDDMNSIPLADDDPQVIIPEEEVLDNSCHISDALGRGRSMDSIPSTFTNGSCSP--NS 65

Query: 64  LDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123
           LDPD+SPDEQEEKARLI+QVLELQNTLDDLSQRVDSVKEENL+LRSENQVL QYIENLMS
Sbjct: 66  LDPDISPDEQEEKARLIAQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLSQYIENLMS 125

Query: 124 ASSVFQSTSPKSGKK 138
           ASSVFQS SP + KK
Sbjct: 126 ASSVFQSASPNTKKK 140

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544877|ref|XP_001607155.1| PREDICTED: short coiled-coil protein B-like isoform 1 [Nasonia vitripennis]

 Score =  177 bits (450), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 114/135 (84%), Gaps = 5/135 (3%)

Query: 6   KISEDINNIPLADDDPQAIISDEVESSQNSEGPIRA---DHSLDSISSSFTNSSSSPGRN 62
           K+ +DIN+IPLADDDPQ II +E  +++N+   + A     S+DS+ S FTNSS SP  N
Sbjct: 10  KLQDDINSIPLADDDPQVIIPEEENNTENNSRTLEALNHGQSMDSLLSGFTNSSCSP--N 67

Query: 63  SLDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122
           SLDPD+SPDEQ+EKARLI+QVLELQNTLDDLSQRVD VKEENL+L+SENQVLGQYIENLM
Sbjct: 68  SLDPDISPDEQQEKARLIAQVLELQNTLDDLSQRVDGVKEENLKLKSENQVLGQYIENLM 127

Query: 123 SASSVFQSTSPKSGK 137
           SASSVFQSTSPK+ K
Sbjct: 128 SASSVFQSTSPKTKK 142

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
WB|WBGene00006802	176	unc-69 [Caenorhabditis elegans	0.536	0.420	0.729	6.4e-26
ZFIN|ZDB-GENE-061013-114	119	scoca "short coiled-coil prote	0.543	0.630	0.736	4.8e-23
ZFIN|ZDB-GENE-041010-41	76	scocb "short coiled-coil prote	0.543	0.986	0.736	4.8e-23
UNIPROTKB|F1NSQ7	124	SCOC "Uncharacterized protein"	0.485	0.540	0.791	4.3e-22
UNIPROTKB|F1N686	159	SCOC "Uncharacterized protein"	0.485	0.421	0.791	4.3e-22
UNIPROTKB|Q9UIL1	159	SCOC "Short coiled-coil protei	0.485	0.421	0.791	4.3e-22
MGI|MGI:1927654	125	Scoc "short coiled-coil protei	0.485	0.536	0.791	4.3e-22
RGD|1311860	122	Scoc "short coiled-coil protei	0.485	0.549	0.791	4.3e-22
UNIPROTKB|G4MNR0	153	MGG_02117 "Uncharacterized pro	0.507	0.457	0.347	0.00027

WB|WBGene00006802 unc-69 [Caenorhabditis elegans (taxid:6239)]

 Score = 268 (99.4 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
 Identities = 54/74 (72%), Positives = 65/74 (87%)

Query:    64 LDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS 123
             L  +  P++ EEKAR+I+QVLELQNTLDDLSQRV+SVKEE+L+LRSENQVLGQYI+NLMS
Sbjct:    34 LPKEEPPEDPEEKARMITQVLELQNTLDDLSQRVESVKEESLKLRSENQVLGQYIQNLMS 93

Query:   124 ASSVFQSTSPKSGK 137
             +SSVFQS+ P   K
Sbjct:    94 SSSVFQSSQPSRPK 107

GO:0016021 "integral to membrane" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030516 "regulation of axon extension" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0050807 "regulation of synapse organization" evidence=IMP

ZFIN|ZDB-GENE-061013-114 scoca "short coiled-coil protein a" [Danio rerio (taxid:7955)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 56/76 (73%), Positives = 66/76 (86%)

Query:    64 LDPDVSPD-EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122
             +D D+    EQEEK RLI+QVLELQ+TL+DLS RVD+VKEENL+L+SENQVLGQYIENLM
Sbjct:    44 IDGDMENQVEQEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLM 103

Query:   123 SASSVFQSTSPKSGKK 138
             SASSVFQ+T  KS +K
Sbjct:   104 SASSVFQTTDTKSKRK 119

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

ZFIN|ZDB-GENE-041010-41 scocb "short coiled-coil protein b" [Danio rerio (taxid:7955)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 56/76 (73%), Positives = 65/76 (85%)

Query:    64 LDPDVSPD-EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM 122
             +D D+    E EEK RLI+QVLELQNTL+DLS RVD+VKEENL+L+SENQVLGQYIENLM
Sbjct:     1 MDGDIENQVELEEKTRLINQVLELQNTLEDLSARVDAVKEENLKLKSENQVLGQYIENLM 60

Query:   123 SASSVFQSTSPKSGKK 138
             SASSVFQ+T  KS +K
Sbjct:    61 SASSVFQTTDSKSKRK 76

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|F1NSQ7 SCOC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 53/67 (79%), Positives = 61/67 (91%)

Query:    72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQST 131
             E EEK RLI+QVLELQ+TL+DLS RVD+VKEENL+L+SENQVLGQYIENLMSASSVFQ+T
Sbjct:    58 ELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTT 117

Query:   132 SPKSGKK 138
               KS +K
Sbjct:   118 DTKSKRK 124

GO:0005768 "endosome" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0016239 "positive regulation of macroautophagy" evidence=IEA

UNIPROTKB|F1N686 SCOC "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 53/67 (79%), Positives = 61/67 (91%)

Query:    72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQST 131
             E EEK RLI+QVLELQ+TL+DLS RVD+VKEENL+L+SENQVLGQYIENLMSASSVFQ+T
Sbjct:    93 ELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTT 152

Query:   132 SPKSGKK 138
               KS +K
Sbjct:   153 DTKSKRK 159

GO:0016239 "positive regulation of macroautophagy" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005768 "endosome" evidence=IEA

UNIPROTKB|Q9UIL1 SCOC "Short coiled-coil protein" [Homo sapiens (taxid:9606)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 53/67 (79%), Positives = 61/67 (91%)

Query:    72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQST 131
             E EEK RLI+QVLELQ+TL+DLS RVD+VKEENL+L+SENQVLGQYIENLMSASSVFQ+T
Sbjct:    93 ELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTT 152

Query:   132 SPKSGKK 138
               KS +K
Sbjct:   153 DTKSKRK 159

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016239 "positive regulation of macroautophagy" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005768 "endosome" evidence=IDA

MGI|MGI:1927654 Scoc "short coiled-coil protein" [Mus musculus (taxid:10090)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 53/67 (79%), Positives = 61/67 (91%)

Query:    72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQST 131
             E EEK RLI+QVLELQ+TL+DLS RVD+VKEENL+L+SENQVLGQYIENLMSASSVFQ+T
Sbjct:    59 ELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTT 118

Query:   132 SPKSGKK 138
               KS +K
Sbjct:   119 DTKSKRK 125

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016239 "positive regulation of macroautophagy" evidence=ISO

RGD|1311860 Scoc "short coiled-coil protein" [Rattus norvegicus (taxid:10116)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 53/67 (79%), Positives = 61/67 (91%)

Query:    72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQST 131
             E EEK RLI+QVLELQ+TL+DLS RVD+VKEENL+L+SENQVLGQYIENLMSASSVFQ+T
Sbjct:    56 ELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTT 115

Query:   132 SPKSGKK 138
               KS +K
Sbjct:   116 DTKSKRK 122

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA;ISO

GO:0005802 "trans-Golgi network" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA

GO:0016239 "positive regulation of macroautophagy" evidence=IEA;ISO

UNIPROTKB|G4MNR0 MGG_02117 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 25/72 (34%), Positives = 42/72 (58%)

Query:    67 DVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASS 126
             D+    ++ +  L      LQ++L  +  R+++VKEE+ +L S N+ L +YI +LMS S 
Sbjct:    84 DIEALGKQARDELRMHAKALQDSLLMIFNRIEAVKEEHDKLDSNNKFLQKYIGDLMSTSK 143

Query:   127 VFQSTSPKSGKK 138
             +  ST  + GKK
Sbjct:   144 I-TSTGGR-GKK 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.305   0.126   0.327    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      138       118   0.00091  102 3  11 23  0.47    31
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  462 (49 KB)
  Total size of DFA:  95 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  16.35u 0.11s 16.46t   Elapsed:  00:00:07
  Total cpu time:  16.35u 0.11s 16.46t   Elapsed:  00:00:08
  Start:  Thu Aug 15 12:30:32 2013   End:  Thu Aug 15 12:30:40 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q08BG7	SCOCA_DANRE	No assigned EC number	0.8059	0.4855	0.5630	yes	N/A
Q5RJZ6	SCOC_RAT	No assigned EC number	0.6078	0.6956	0.7868	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	138
pfam10224	80	pfam10224, DUF2205, Predicted coiled-coil protein	3e-30

>gnl|CDD|192486 pfam10224, DUF2205, Predicted coiled-coil protein (DUF2205)

 Score =  103 bits (259), Expect = 3e-30
 Identities = 53/82 (64%), Positives = 63/82 (76%), Gaps = 2/82 (2%)

Query: 57  SSPGRNSLDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ 116
            SP R+S   D+   E+E + RLI Q LELQ++L+DLSQRV++VKEENL+LRSENQ L Q
Sbjct: 1   MSPRRDS--EDLEALEKEARQRLIEQALELQDSLEDLSQRVEAVKEENLKLRSENQFLQQ 58

Query: 117 YIENLMSASSVFQSTSPKSGKK 138
           YIENLMS SSV QSTSPK   K
Sbjct: 59  YIENLMSNSSVTQSTSPKIKNK 80

This entry represent a highly conserved 100 residue region which is likely to be a coiled-coil structure. The exact function is unknown. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
KOG3650|consensus	120		99.98
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	99.97
PF09457	48	RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab1	94.44
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	93.57
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	92.22
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	91.77
PRK13169	110	DNA replication intiation control protein YabA; Re	91.48
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	87.44
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	86.28
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	86.22
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	86.15
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	85.6
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	84.9
KOG3119|consensus	269		82.51
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	82.48
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	81.37
PRK00888	105	ftsB cell division protein FtsB; Reviewed	81.14
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	80.8
PRK13169	110	DNA replication intiation control protein YabA; Re	80.39

>KOG3650|consensus

Probab=99.98  E-value=2.3e-32  Score=205.25  Aligned_cols=114  Identities=65%  Similarity=0.783  Sum_probs=97.6

Q ss_pred             cccCCCCCCCCCCCCccccCCCCCCCCCCCCCccCCccccccccccCCCCCCCC--CCCCC-CCCcchHHHHHHHHHHHH
Q psy5453           8 SEDINNIPLADDDPQAIISDEVESSQNSEGPIRADHSLDSISSSFTNSSSSPGR--NSLDP-DVSPDEQEEKARLISQVL   84 (138)
Q Consensus         8 ~~~~~~i~~~~d~p~v~i~~~~~~~~~~~~~~~~~rs~ds~~s~f~~~a~SP~~--~s~d~-e~~~~~~eeKe~Li~eil   84 (138)
                      ..+.++||++|+|++|.|.-.+        .|..||         |+++..|-.  +..+. |......|+|.+||.|++
T Consensus         4 k~e~ddipl~d~d~~v~I~~sg--------r~~~gr---------tprs~~P~~~~~~l~a~e~~~d~~EEKaRlItQVL   66 (120)
T KOG3650|consen    4 KEEEDDIPLTDIDLAVDIDHSG--------RILYGR---------TPRSLLPKMMNADLDAVEAENDVEEEKARLITQVL   66 (120)
T ss_pred             ccccccCcccCCCccccccccc--------cccCCC---------CccccCcccccccccccccccChHHHHHHHHHHHH
Confidence            4577899999999999997443        666677         666666722  33443 444566699999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhcccccccCCCCCCCC
Q psy5453          85 ELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQSTSPKSGKK  138 (138)
Q Consensus        85 ~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS~vfqst~~~~kk~  138 (138)
                      +||+||++|.+||+.||+|+.||++|||+|++||+|||++|+|||+|+++.|||
T Consensus        67 ELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVFQst~ps~~kk  120 (120)
T KOG3650|consen   67 ELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQSTDPSSKKK  120 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhcCCCccccC
Confidence            999999999999999999999999999999999999999999999999999987

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=99.97  E-value=3.2e-32  Score=193.48  Aligned_cols=80  Identities=64%  Similarity=0.807  Sum_probs=78.0

Q ss_pred             CCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhcccccccCCCCCC
Q psy5453          57 SSPGRNSLDPDVSPDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSASSVFQSTSPKSG  136 (138)
Q Consensus        57 ~SP~~~s~d~e~~~~~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMssS~vfqst~~~~k  136 (138)
                      |||++++.|.+  ..+.++|++||+||++||++|++||+||++||+||+||++||+|||+||+|||++|+||+++++++|
T Consensus         1 msp~~~~~d~e--~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v~~s~~~~~~   78 (80)
T PF10224_consen    1 MSPRRNSEDIE--KLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSVFQSTSPKSK   78 (80)
T ss_pred             CCCCCchHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccc
Confidence            89999999998  8999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CC
Q psy5453         137 KK  138 (138)
Q Consensus       137 k~  138 (138)
                      +|
T Consensus        79 ~~   80 (80)
T PF10224_consen   79 KK   80 (80)
T ss_pred             CC
Confidence            76

The exact function is unknown.

>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis

Probab=94.44  E-value=0.12  Score=34.01  Aligned_cols=33  Identities=33%  Similarity=0.486  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453          91 DDLSQRVDSVKEENLRLRSENQVLGQYIENLMS  123 (138)
Q Consensus        91 ~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs  123 (138)
                      +.|..-+...++++.+.+..-+-|++||++|..
T Consensus         3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~   35 (48)
T PF09457_consen    3 EELISLLKKQEEENARKDSRVRELEDYIDNLLV   35 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666667777777777777789999999953

A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=93.57  E-value=0.61  Score=34.70  Aligned_cols=47  Identities=34%  Similarity=0.481  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453          77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS  123 (138)
Q Consensus        77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs  123 (138)
                      ..|-+++..|.+.|..|-..|.++-+||..|+-||+-|.+-+..+-.
T Consensus        11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen   11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35677888888888888888889999999999999999999988866

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=92.22  E-value=1.2  Score=31.12  Aligned_cols=48  Identities=25%  Similarity=0.261  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453          75 EKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM  122 (138)
Q Consensus        75 eKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM  122 (138)
                      .=++|-..|..+=+++..|-.+|++.|+++..|..+|.-|.....-|-
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~   52 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK   52 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            335677777777788888888888888887777777777766665553

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=91.77  E-value=0.53  Score=39.38  Aligned_cols=45  Identities=24%  Similarity=0.330  Sum_probs=38.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453          72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ  116 (138)
Q Consensus        72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~  116 (138)
                      =..+|++.-+...+|.+-|..+.+.+...+.|.++|+++|--|=+
T Consensus        84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE  128 (248)
T PF08172_consen   84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYE  128 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999999965544

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=91.48  E-value=1.1  Score=33.64  Aligned_cols=45  Identities=31%  Similarity=0.364  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453          77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL  121 (138)
Q Consensus        77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL  121 (138)
                      ..|-+++..|...|..|-..|.++-+||..|+-||+-|..-++.+
T Consensus        11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169         11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457788899999999999999999999999999999999999987

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=87.44  E-value=3.4  Score=28.82  Aligned_cols=39  Identities=31%  Similarity=0.445  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHH
Q psy5453          78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQ  116 (138)
Q Consensus        78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~  116 (138)
                      .++..|..||.-+..|-.+..+.++++..|+.||+-|++
T Consensus        15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~   53 (72)
T PF06005_consen   15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQ   53 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            456666777777777777766666666666666666653

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=86.28  E-value=4  Score=27.69  Aligned_cols=41  Identities=24%  Similarity=0.459  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453          83 VLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS  123 (138)
Q Consensus        83 il~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs  123 (138)
                      +.+|.+-|..+..-|..||.|++.|+.+.+-+.+=|..||+
T Consensus         2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~   42 (55)
T PF05377_consen    2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS   42 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888889999999999999999999999999999986

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=86.22  E-value=5  Score=29.85  Aligned_cols=46  Identities=26%  Similarity=0.328  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453          76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL  121 (138)
Q Consensus        76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL  121 (138)
                      |..|...+..|.+.|..|...|.++|.....|-.||..|+.=-.+|
T Consensus         3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L   48 (107)
T PF06156_consen    3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHL   48 (107)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999999999999999998766665

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=86.15  E-value=3.7  Score=26.89  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Q psy5453          78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVL  114 (138)
Q Consensus        78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~L  114 (138)
                      +=...+..|++.+..|....+..+.++..|..++.-|
T Consensus        23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L   59 (64)
T PF00170_consen   23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQSL   59 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555555444444444444444444444443

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=85.60  E-value=5.9  Score=25.89  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453          76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE  119 (138)
Q Consensus        76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~  119 (138)
                      ...+-+++..|+..+..+-.+.+..+.+.++|++.-.++.++..
T Consensus        19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR   62 (80)
T PF04977_consen   19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR   62 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            34455666666666666666666666666666556666666655

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=84.90  E-value=6.3  Score=25.74  Aligned_cols=44  Identities=27%  Similarity=0.495  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhH---HHHHHHHhh
Q psy5453          80 ISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVL---GQYIENLMS  123 (138)
Q Consensus        80 i~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~L---q~YI~NLMs  123 (138)
                      +.++..++..+..|-.+++..+.++++|+.+=+.|   .+||+-+-+
T Consensus        16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR   62 (80)
T PF04977_consen   16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR   62 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            34455666666666666666666666666666666   456655543

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>KOG3119|consensus

Probab=82.51  E-value=26  Score=29.43  Aligned_cols=108  Identities=18%  Similarity=0.243  Sum_probs=61.9

Q ss_pred             CCCCCCCCccccCCCCCCCCCCCCCccCCcccc-ccccccCCCCCCCCCCC-----CCCCCcchHHHHHHHHHHHHHHHH
Q psy5453          15 PLADDDPQAIISDEVESSQNSEGPIRADHSLDS-ISSSFTNSSSSPGRNSL-----DPDVSPDEQEEKARLISQVLELQN   88 (138)
Q Consensus        15 ~~~~d~p~v~i~~~~~~~~~~~~~~~~~rs~ds-~~s~f~~~a~SP~~~s~-----d~e~~~~~~eeKe~Li~eil~LQ~   88 (138)
                      |++-|..++.+.-. ..+.+..++...+++... -...|+...+.|.....     -......+.+.+++.-+.-.+++.
T Consensus       130 P~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~s~~~~~~~~~~~K~~~~~~~~~~~~~~y~err~rNN~A~~k  208 (269)
T KOG3119|consen  130 PVPPDTLQPLVGYE-PDPSDLAASSSPSPSSPDPSKPKSSGAKLKPQSTARKKSKLSSPVEKKDPEYKERRRRNNEAVRK  208 (269)
T ss_pred             CCChhhccccccCC-CCccccccccCCCCCCCCCCCCCCcccccCCccchhhhccCCCchhcCCHHHHHHHHhhhHHHHH
Confidence            56666667666666 445555555555554332 23345554555522111     112234566666665555544444


Q ss_pred             H-------HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453          89 T-------LDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS  123 (138)
Q Consensus        89 s-------L~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs  123 (138)
                      +       .+.++.||.....|++.|+.+.+.|++=+..|-.
T Consensus       209 SR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~  250 (269)
T KOG3119|consen  209 SRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR  250 (269)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4       3567788888888888888888777777777644

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=82.48  E-value=7.3  Score=32.07  Aligned_cols=50  Identities=20%  Similarity=0.312  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHh
Q psy5453          73 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLM  122 (138)
Q Consensus        73 ~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLM  122 (138)
                      ..+|+.+..+.-.+..++.+|+.|.+.+|+....++.+=+.|..+|..++
T Consensus        75 ~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~  124 (207)
T PF05010_consen   75 LKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYE  124 (207)
T ss_pred             HhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            45788899999999999999999999999999999998777777666554

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=81.37  E-value=11  Score=30.66  Aligned_cols=49  Identities=10%  Similarity=0.111  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453          73 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL  121 (138)
Q Consensus        73 ~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL  121 (138)
                      .....+..+++..+++.=..|..++..++.+.+.|+..|+.|+.||.++
T Consensus        34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q   82 (251)
T PF11932_consen   34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQ   82 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556677777888888888899999999999999999999998876

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=81.14  E-value=7.3  Score=28.55  Aligned_cols=41  Identities=29%  Similarity=0.214  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453          77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL  121 (138)
Q Consensus        77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL  121 (138)
                      .++.+++.+++..+..|-.+....+.|.+.|++.-    +||+.+
T Consensus        30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~----dyiEe~   70 (105)
T PRK00888         30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQ----EAIEER   70 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcH----HHHHHH
Confidence            33444444444444444444444444444444321    477766

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=80.80  E-value=5.3  Score=27.75  Aligned_cols=46  Identities=20%  Similarity=0.264  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453          78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS  123 (138)
Q Consensus        78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs  123 (138)
                      +||.....|+..=..|-.++...+.|...|..-|+.=..=|+-|++
T Consensus        11 ~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~   56 (65)
T TIGR02449        11 HLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMIT   56 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555555555555555555555543

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=80.39  E-value=7.5  Score=29.28  Aligned_cols=46  Identities=22%  Similarity=0.289  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453          76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL  121 (138)
Q Consensus        76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL  121 (138)
                      |..|...+..|...|..|...+.+.|.....|-.||..|+-==.+|
T Consensus         3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~L   48 (110)
T PRK13169          3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKL   48 (110)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568889999999999999999999999999999999998655555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	93.17
3tso_C	75	RAB11 family-interacting protein 2; RAS GTPase fol	93.13
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	92.37
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	91.85
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	91.67
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	89.63
1a92_A	50	Delta antigen; leucine zipper, coiled-coil, oligom	88.33
2ieq_A	109	S glycoprotein, spike glycoprotein, peplomer prote	84.94
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	84.33
2gzd_C	107	RAB11 family-interacting protein 2; G protein fold	84.07
3hrn_A	64	Transient receptor potential (Trp) channel subfami	82.39
2hv8_D	64	RAB11 family-interacting protein 3; protein transp	81.26
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	80.25
2d7c_C	42	RAB11 family-interacting protein 3; GTP-ASE, coile	80.12

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=93.17  E-value=0.33  Score=31.39  Aligned_cols=39  Identities=15%  Similarity=0.224  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453          81 SQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE  119 (138)
Q Consensus        81 ~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~  119 (138)
                      +++-.|.....-|+.||.+.+.-|.++++|++-|+..+.
T Consensus         4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk   42 (48)
T 3vmx_A            4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK   42 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            456678888888999999999999999999999887653

>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A

Probab=93.13  E-value=0.28  Score=34.27  Aligned_cols=50  Identities=20%  Similarity=0.349  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH----hh-cccccccCCCCCCC
Q psy5453          74 EEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL----MS-ASSVFQSTSPKSGK  137 (138)
Q Consensus        74 eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL----Ms-sS~vfqst~~~~kk  137 (138)
                      -.|++||+.++.+|..|..--.||              +-|++||+||    |- +.+++|.+...+||
T Consensus        14 ltreELi~l~lk~~~~l~~k~~~v--------------~eLEdYID~LLvRVME~~P~iLq~p~~~~kk   68 (75)
T 3tso_C           14 LTYEEVLQELVKHKELLRRKDTHI--------------RELEDYIDNLLVRVMEETPSILRVPYEPSRK   68 (75)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHCGGGGBSSCCC---
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhCcHHhhCCCccccc
Confidence            347789988888887766433333              3489999999    43 78889876654443

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=92.37  E-value=0.44  Score=35.07  Aligned_cols=43  Identities=37%  Similarity=0.438  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhhhHhHHH
Q psy5453          74 EEKARLISQVLELQNTLDDL--------------SQRVDSVKEENLRLRSENQVLGQ  116 (138)
Q Consensus        74 eeKe~Li~eil~LQ~sL~~L--------------~~RVd~VKeE~~KL~sENq~Lq~  116 (138)
                      ..|.+||++-+.|-.-+..|              -.||.+...|.++|+.||+.|-+
T Consensus        30 mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~   86 (104)
T 3s9g_A           30 MSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT   86 (104)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            35778888887776666554              34888899999999999998864

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=91.85  E-value=0.84  Score=29.78  Aligned_cols=44  Identities=23%  Similarity=0.282  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHH
Q psy5453          76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIE  119 (138)
Q Consensus        76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~  119 (138)
                      |.+=..++..|+.-+..|-.+..+.+.++..|+.|+.+|.+.|-
T Consensus        18 R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~   61 (63)
T 1ci6_A           18 RQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44556678889999999999999999999999999999988764

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=91.67  E-value=0.29  Score=33.17  Aligned_cols=37  Identities=27%  Similarity=0.287  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhhc
Q psy5453          88 NTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMSA  124 (138)
Q Consensus        88 ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMss  124 (138)
                      .-+..|=.+|.....++..|..||++|..+|..|..-
T Consensus        29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E   65 (70)
T 1gd2_E           29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE   65 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566677788888999999999999999998753

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=89.63  E-value=1.5  Score=33.04  Aligned_cols=46  Identities=35%  Similarity=0.422  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453          76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL  121 (138)
Q Consensus        76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL  121 (138)
                      +..-.+++.+||+-+..|-+.+...-.|.+.|+.+|++|+--|..-
T Consensus        66 kaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~  111 (121)
T 3mq7_A           66 KAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK  111 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence            3444677999999999999999999999999999999999877543

>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A

Probab=88.33  E-value=2.5  Score=27.45  Aligned_cols=45  Identities=18%  Similarity=0.321  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453          76 KARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIEN  120 (138)
Q Consensus        76 Ke~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~N  120 (138)
                      |++++.+....+.-+..|=.....+|+.+.||+-||-.|+.-+|=
T Consensus         2 ree~LeqWv~~Rkk~eeler~lrk~kk~iKklEdeNPWLGNIkGI   46 (50)
T 1a92_A            2 REDILEQWVSGRKKLEELERDLRKLKKKIKKLEEDNPWLGNIKGI   46 (50)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhhhhhh
Confidence            678899999999999999999999999999999999999876653

>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}

Probab=84.94  E-value=0.7  Score=34.21  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453          92 DLSQRVDSVKEENLRLRSENQVLGQYIENLMS  123 (138)
Q Consensus        92 ~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs  123 (138)
                      .|..|+|.+....+.|..=-.-||+||+||=.
T Consensus        73 ni~~elD~LEa~A~~l~~~~~elq~~idn~n~  104 (109)
T 2ieq_A           73 NLSSELKQLEAKTASLFQTTVELQGLIDQINS  104 (109)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            78899999999999999999999999999855

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=84.33  E-value=5.7  Score=29.47  Aligned_cols=45  Identities=20%  Similarity=0.201  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Q psy5453          77 ARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL  121 (138)
Q Consensus        77 e~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL  121 (138)
                      +++.+++..|..-|-.+--+.++++.+.++|+.+|..|+.=|..|
T Consensus        85 ~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l  129 (138)
T 3hnw_A           85 ENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566667777777788888888888888888888888888777

>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A

Probab=84.07  E-value=0.61  Score=34.46  Aligned_cols=50  Identities=20%  Similarity=0.314  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH----hh-cccccccCCCCCC
Q psy5453          73 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENL----MS-ASSVFQSTSPKSG  136 (138)
Q Consensus        73 ~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NL----Ms-sS~vfqst~~~~k  136 (138)
                      .-.|++||+.++.++..|              .+-+.+=+-|++||++|    |. +.+++|.+....|
T Consensus        45 ~lTrdELI~lllk~e~~l--------------~~kd~~IrELEDYID~LLvRVME~tP~ILqvpy~~~~   99 (107)
T 2gzd_C           45 SLTYEEVLQELVKHKELL--------------RRKDTHIRELEDYIDNLLVRVMEETPSILRVPYEPSR   99 (107)
T ss_dssp             --------------------------------CCHHHHHHHHHHHHHHHHHHHHHHCGGGGBSSCCC--
T ss_pred             ccCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhCchhhhCCCcccc
Confidence            345667777666555333              23333345699999999    54 7788886554433

>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A

Probab=82.39  E-value=9.2  Score=25.85  Aligned_cols=52  Identities=13%  Similarity=0.210  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHhh
Q psy5453          72 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIENLMS  123 (138)
Q Consensus        72 ~~eeKe~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~NLMs  123 (138)
                      +.++=..|.++++.|+.+|.++..+||.|-....-++..-..=.+-|+-||.
T Consensus         4 S~EEF~~L~rRVlqLE~sl~gI~SqIDaV~~KL~~~Er~k~~~re~m~kll~   55 (64)
T 3hrn_A            4 SYEEFQVLVRRVDRMEHSIGSIVSKIDAVIVKLEIMERAKLKRREVLGRLLD   55 (64)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc
Confidence            5677788999999999999999999999987776666655555555666654

>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1

Probab=81.26  E-value=1.8  Score=29.09  Aligned_cols=15  Identities=27%  Similarity=0.470  Sum_probs=12.0

Q ss_pred             hhhhHhHHHHHHHHh
Q psy5453         108 RSENQVLGQYIENLM  122 (138)
Q Consensus       108 ~sENq~Lq~YI~NLM  122 (138)
                      +..|+-|++||++|.
T Consensus        36 ee~n~~Le~YID~LL   50 (64)
T 2hv8_D           36 EEINFRLQDYIDRII   50 (64)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            335689999999994

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=80.25  E-value=5  Score=25.20  Aligned_cols=36  Identities=33%  Similarity=0.556  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Q psy5453          78 RLISQVLELQNTLDDLSQRVDSVKEENLRLRSENQVLGQYIEN  120 (138)
Q Consensus        78 ~Li~eil~LQ~sL~~L~~RVd~VKeE~~KL~sENq~Lq~YI~N  120 (138)
                      .|-.++++|+.....|=+||.       -|.+||++|.+-+-|
T Consensus         7 eLE~r~k~le~~naeLEervs-------tLq~EN~mLRqvl~n   42 (42)
T 2oqq_A            7 ELENRVKDLENKNSELEERLS-------TLQNENQMLRHILKN   42 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHhcC
Confidence            355566666665555555554       577888888886643

>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1

Probab=80.12  E-value=2.4  Score=26.40  Aligned_cols=13  Identities=31%  Similarity=0.526  Sum_probs=11.3

Q ss_pred             hhHhHHHHHHHHh
Q psy5453         110 ENQVLGQYIENLM  122 (138)
Q Consensus       110 ENq~Lq~YI~NLM  122 (138)
                      .|+-|++||++|.
T Consensus        16 ~n~~Le~YID~LL   28 (42)
T 2d7c_C           16 INFRLQDYIDRII   28 (42)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5799999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00