Psyllid ID: psy5526

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGSLSTLSNT
Secondary Structure (PSIPRED)
ccccHHHHHHcccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHccEEEHHHHHccccccccEEEccccccccccHHHHHHHHHHHHHHHHHccccHHHccccHHHHcccccccEEEEEc
Coil and Loop (DISEMBL)
mslpeelgpalsdGVVLCHLanhvrprsvasihvpspavpkltmaRCRRNVDNFLEACRKIGVeegdlcdrdsivdatqgslstlsnt
Flexible Loop (DISEMBL)
mslpeelgpALSDGVVLCHLANHVrprsvasihvpspavpkltmarCRRNVDNFLEACRKIGVeegdlcdrdsivdatqgslstlsnt
Low Complexity Region (SEG)
MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGSLSTLSNT
Disordered region (IsUnstruct)
***********SDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSI**************
Disordered Region (DISOPRED)
*SLPEELGPALSDGVVLCHLANHVRPRS****************ARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGSLSTL***
Disordered Region (DISEMBL)
MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQG********
Disordered Region (DISPRO)
MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGSLSTLSNT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGSLSTLSNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
Q9Y2L9	728	Leucine-rich repeat and c	yes	N/A	0.784	0.094	0.811	6e-28
Q96II8	777	Leucine-rich repeat and c	no	N/A	0.784	0.088	0.826	2e-27
P62046	709	Leucine-rich repeat and c	yes	N/A	0.784	0.097	0.811	3e-27
Q8BVU0	778	Leucine-rich repeat and c	no	N/A	0.784	0.088	0.811	4e-27
P41737	251	Leucine-rich repeat and c	N/A	N/A	0.784	0.274	0.797	5e-27
Q3UMG5	773	Leucine-rich repeat and c	no	N/A	0.761	0.086	0.761	3e-26
Q5VUJ6	765	Leucine-rich repeat and c	no	N/A	0.761	0.087	0.761	3e-26
Q921G6	680	Leucine-rich repeat and c	no	N/A	0.943	0.122	0.578	6e-22
O75427	683	Leucine-rich repeat and c	no	N/A	0.931	0.120	0.585	7e-22

>sp|Q9Y2L9|LRCH1_HUMAN Leucine-rich repeat and calponin homology domain-containing protein 1 OS=Homo sapiens GN=LRCH1 PE=1 SV=3

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 56/69 (81%), Positives = 63/69 (91%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           +SL E+LG AL DGVVLCHL NH+RPRSVASIHVPSPAVPKL+MA+CRRNV+NFLEACRK
Sbjct: 596 VSLHEDLGAALMDGVVLCHLVNHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRK 655

Query: 61  IGVEEGDLC 69
           +GV E DLC
Sbjct: 656 LGVPEADLC 664

Homo sapiens (taxid: 9606)

>sp|Q96II8|LRCH3_HUMAN Leucine-rich repeat and calponin homology domain-containing protein 3 OS=Homo sapiens GN=LRCH3 PE=1 SV=2

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/69 (82%), Positives = 63/69 (91%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           +SLP +LG AL+DGVVLCHLANHVRPRSV SIHVPSPAVPKLTMA+CRRNV+NFLEACRK
Sbjct: 672 VSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRK 731

Query: 61  IGVEEGDLC 69
           IGV +  LC
Sbjct: 732 IGVPQEQLC 740

Homo sapiens (taxid: 9606)

>sp|P62046|LRCH1_MOUSE Leucine-rich repeat and calponin homology domain-containing protein 1 OS=Mus musculus GN=Lrch1 PE=1 SV=2

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/69 (81%), Positives = 63/69 (91%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           ++L E+LG AL DGVVLCHLANHVRPRSVASIHVPSPAVPKL+MA+CRRNV+NFLEACRK
Sbjct: 609 VTLHEDLGAALMDGVVLCHLANHVRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRK 668

Query: 61  IGVEEGDLC 69
           +GV E  LC
Sbjct: 669 LGVPEEKLC 677

Mus musculus (taxid: 10090)

>sp|Q8BVU0|LRCH3_MOUSE Leucine-rich repeat and calponin homology domain-containing protein 3 OS=Mus musculus GN=Lrch3 PE=2 SV=3

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/69 (81%), Positives = 63/69 (91%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           +SLP +LG AL+DGVVLCHLANHVRPRSV SIHVPSPAVPKLTMA+CRRNV+NFL+ACRK
Sbjct: 665 VSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLDACRK 724

Query: 61  IGVEEGDLC 69
           IGV +  LC
Sbjct: 725 IGVPQEQLC 733

Mus musculus (taxid: 10090)

>sp|P41737|LRCH1_FELCA Leucine-rich repeat and calponin homology domain-containing protein 1 (Fragment) OS=Felis catus PE=2 SV=2

 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 62/69 (89%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           +SL E+LG AL DGVVLCHL NH+RPRSVASIHVPSPAVPKL+MA+CRRNV+NFLEACRK
Sbjct: 151 VSLHEDLGAALMDGVVLCHLVNHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRK 210

Query: 61  IGVEEGDLC 69
           +GV E  LC
Sbjct: 211 LGVPEEKLC 219

Felis catus (taxid: 9685)

>sp|Q3UMG5|LRCH2_MOUSE Leucine-rich repeat and calponin homology domain-containing protein 2 OS=Mus musculus GN=Lrch2 PE=2 SV=2

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 51/67 (76%), Positives = 62/67 (92%)

Query: 3   LPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIG 62
           LP+++G AL DGVVLCHLANH+RPRSVASIHVPSPAVPKL+MA+CRRNV+NFL+AC+K+G
Sbjct: 672 LPDDIGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLDACKKLG 731

Query: 63  VEEGDLC 69
           V +  LC
Sbjct: 732 VSQERLC 738

Mus musculus (taxid: 10090)

>sp|Q5VUJ6|LRCH2_HUMAN Leucine-rich repeat and calponin homology domain-containing protein 2 OS=Homo sapiens GN=LRCH2 PE=2 SV=2

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 51/67 (76%), Positives = 62/67 (92%)

Query: 3   LPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIG 62
           LP+++G AL DGVVLCHLANH+RPRSVASIHVPSPAVPKL+MA+CRRNV+NFL+AC+K+G
Sbjct: 664 LPDDIGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLDACKKLG 723

Query: 63  VEEGDLC 69
           V +  LC
Sbjct: 724 VSQERLC 730

Homo sapiens (taxid: 9606)

>sp|Q921G6|LRCH4_MOUSE Leucine-rich repeat and calponin homology domain-containing protein 4 OS=Mus musculus GN=Lrch4 PE=2 SV=1

 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 62/83 (74%)

Query: 3   LPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIG 62
           LPE+L  AL++GV+LC LAN +RPRSV  IHVPSPAVPKL+  + R+NV++FLEACRK+G
Sbjct: 553 LPEDLAEALANGVLLCQLANQLRPRSVPFIHVPSPAVPKLSALKSRKNVESFLEACRKMG 612

Query: 63  VEEGDLCDRDSIVDATQGSLSTL 85
           V E DLC    ++  T   L T+
Sbjct: 613 VPEADLCSPSDLLRGTAQGLQTV 635

Mus musculus (taxid: 10090)

>sp|O75427|LRCH4_HUMAN Leucine-rich repeat and calponin homology domain-containing protein 4 OS=Homo sapiens GN=LRCH4 PE=1 SV=2

 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query: 3   LPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIG 62
           LPE+L  AL+ GV+LC LAN +RPRSV  IHVPSPAVPKL+  + R+NV++FLEACRK+G
Sbjct: 556 LPEDLAEALASGVILCQLANQLRPRSVPFIHVPSPAVPKLSALKARKNVESFLEACRKMG 615

Query: 63  VEEGDLCDRDSIVDATQGSLST 84
           V E DLC    ++  T   L T
Sbjct: 616 VPEADLCSPSDLLQGTARGLRT 637

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
307213439	724	Leucine-rich repeat and calponin-like pr	0.863	0.104	0.868	1e-31
340709272	826	PREDICTED: hypothetical protein LOC10064	0.863	0.092	0.855	2e-31
357620537	804	hypothetical protein KGM_05636 [Danaus p	0.886	0.097	0.807	5e-31
270007220	716	hypothetical protein TcasGA2_TC013766 [T	0.909	0.111	0.775	6e-31
91082255	715	PREDICTED: similar to CG6860 CG6860-PA [	0.909	0.111	0.775	6e-31
242024056	652	calponin homology domain containing prot	0.784	0.105	0.913	7e-31
66500629	758	PREDICTED: leucine-rich repeat and calpo	0.909	0.105	0.775	7e-30
350425067	757	PREDICTED: leucine-rich repeat and calpo	0.909	0.105	0.775	7e-30
380012198	730	PREDICTED: leucine-rich repeat and calpo	0.909	0.109	0.775	7e-30
383865043	756	PREDICTED: leucine-rich repeat and calpo	0.909	0.105	0.775	8e-30

>gi|307213439|gb|EFN88861.1| Leucine-rich repeat and calponin-like proteiny domain-containing protein 3 [Harpegnathos saltator]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           M+LPE+L PAL+DGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK
Sbjct: 543 MALPEDLAPALTDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 602

Query: 61  IGVEEGDLCDRDSIVD 76
           IGV+E  L D DSI+D
Sbjct: 603 IGVDEEVLLDADSIMD 618

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709272|ref|XP_003393235.1| PREDICTED: hypothetical protein LOC100649436 [Bombus terrestris]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 71/76 (93%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           M+LPE+L PAL+DGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK
Sbjct: 643 MALPEDLAPALTDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 702

Query: 61  IGVEEGDLCDRDSIVD 76
           IGV+E  L D D+I+D
Sbjct: 703 IGVDEEVLMDADAIMD 718

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357620537|gb|EHJ72690.1| hypothetical protein KGM_05636 [Danaus plexippus]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/78 (80%), Positives = 69/78 (88%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           MSLPE+L P LSDGVVLCHLANHVRPR+VAS+HVPSPA PKLTMARCRRNVDNFLEACR+
Sbjct: 484 MSLPEQLAPVLSDGVVLCHLANHVRPRAVASVHVPSPAQPKLTMARCRRNVDNFLEACRR 543

Query: 61  IGVEEGDLCDRDSIVDAT 78
           IGVEE D+C  + I D T
Sbjct: 544 IGVEEEDICSPEDIGDET 561

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007220|gb|EFA03668.1| hypothetical protein TcasGA2_TC013766 [Tribolium castaneum]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 71/80 (88%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           M+LPE+L PAL+DGVVLCHLANH++PRSVASIHVPSPAVPKLTMARCRRNVDNF+EACRK
Sbjct: 581 MTLPEDLAPALTDGVVLCHLANHIKPRSVASIHVPSPAVPKLTMARCRRNVDNFIEACRK 640

Query: 61  IGVEEGDLCDRDSIVDATQG 80
           IGV+EG LC    + +A  G
Sbjct: 641 IGVDEGRLCSTLDVTEALAG 660

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082255|ref|XP_973064.1| PREDICTED: similar to CG6860 CG6860-PA [Tribolium castaneum]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 71/80 (88%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           M+LPE+L PAL+DGVVLCHLANH++PRSVASIHVPSPAVPKLTMARCRRNVDNF+EACRK
Sbjct: 580 MTLPEDLAPALTDGVVLCHLANHIKPRSVASIHVPSPAVPKLTMARCRRNVDNFIEACRK 639

Query: 61  IGVEEGDLCDRDSIVDATQG 80
           IGV+EG LC    + +A  G
Sbjct: 640 IGVDEGRLCSTLDVTEALAG 659

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024056|ref|XP_002432446.1| calponin homology domain containing protein, putative [Pediculus humanus corporis] gi|212517879|gb|EEB19708.1| calponin homology domain containing protein, putative [Pediculus humanus corporis]

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 63/69 (91%), Positives = 66/69 (95%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           MSLPEE+GPAL DGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFL+ACRK
Sbjct: 548 MSLPEEMGPALMDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLDACRK 607

Query: 61  IGVEEGDLC 69
           IGVEE  +C
Sbjct: 608 IGVEENMIC 616

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66500629|ref|XP_392557.2| PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 1-like [Apis mellifera]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 71/80 (88%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           M+LPE+L PAL+DGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK
Sbjct: 644 MALPEDLAPALTDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 703

Query: 61  IGVEEGDLCDRDSIVDATQG 80
           IGV+E  +C    +++  +G
Sbjct: 704 IGVDENLVCCASDVLEGGRG 723

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425067|ref|XP_003494001.1| PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 1-like [Bombus impatiens]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 71/80 (88%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           M+LPE+L PAL+DGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK
Sbjct: 643 MALPEDLAPALTDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 702

Query: 61  IGVEEGDLCDRDSIVDATQG 80
           IGV+E  +C    +++  +G
Sbjct: 703 IGVDENLVCCASDVLEGGRG 722

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012198|ref|XP_003690173.1| PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 1-like [Apis florea]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 71/80 (88%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           M+LPE+L PAL+DGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK
Sbjct: 616 MALPEDLAPALTDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 675

Query: 61  IGVEEGDLCDRDSIVDATQG 80
           IGV+E  +C    +++  +G
Sbjct: 676 IGVDENLVCCASDVLEGGRG 695

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865043|ref|XP_003707985.1| PREDICTED: leucine-rich repeat and calponin homology domain-containing protein 1-like [Megachile rotundata]

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 71/80 (88%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           M+LPE+L PAL+DGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK
Sbjct: 642 MALPEDLAPALTDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 701

Query: 61  IGVEEGDLCDRDSIVDATQG 80
           IGV+E  +C    +++  +G
Sbjct: 702 IGVDENLVCCASDVLEGGRG 721

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
UNIPROTKB|Q96II8	777	LRCH3 "Leucine-rich repeat and	0.784	0.088	0.826	8.1e-26
MGI|MGI:1917394	778	Lrch3 "leucine-rich repeats an	0.784	0.088	0.811	1.7e-25
MGI|MGI:2443390	709	Lrch1 "leucine-rich repeats an	0.784	0.097	0.811	1.8e-25
MGI|MGI:2147870	773	Lrch2 "leucine-rich repeats an	0.761	0.086	0.761	1.6e-24
FB|FBgn0032633	1135	Lrch "Leucine-rich-repeats and	0.852	0.066	0.72	1.9e-24
UNIPROTKB|O75427	683	LRCH4 "Leucine-rich repeat and	0.931	0.120	0.585	9.6e-22
RGD|1306145	686	Lrch4 "leucine-rich repeats an	0.943	0.120	0.590	1.6e-21
UNIPROTKB|F1RMY1	690	LRCH4 "Uncharacterized protein	0.943	0.120	0.595	4.4e-21
UNIPROTKB|F1MV58	658	LRCH4 "Uncharacterized protein	0.840	0.112	0.581	2.5e-18
DICTYBASE|DDB_G0292664	176	DDB_G0292664 "calponin homolog	0.636	0.318	0.444	3.9e-05

UNIPROTKB|Q96II8 LRCH3 "Leucine-rich repeat and calponin homology domain-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 302 (111.4 bits), Expect = 8.1e-26, P = 8.1e-26
 Identities = 57/69 (82%), Positives = 63/69 (91%)

Query:     1 MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
             +SLP +LG AL+DGVVLCHLANHVRPRSV SIHVPSPAVPKLTMA+CRRNV+NFLEACRK
Sbjct:   672 VSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRK 731

Query:    61 IGVEEGDLC 69
             IGV +  LC
Sbjct:   732 IGVPQEQLC 740

GO:0005576 "extracellular region" evidence=IEA

MGI|MGI:1917394 Lrch3 "leucine-rich repeats and calponin homology (CH) domain containing 3" [Mus musculus (taxid:10090)]

 Score = 299 (110.3 bits), Expect = 1.7e-25, P = 1.7e-25
 Identities = 56/69 (81%), Positives = 63/69 (91%)

Query:     1 MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
             +SLP +LG AL+DGVVLCHLANHVRPRSV SIHVPSPAVPKLTMA+CRRNV+NFL+ACRK
Sbjct:   665 VSLPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLDACRK 724

Query:    61 IGVEEGDLC 69
             IGV +  LC
Sbjct:   725 IGVPQEQLC 733

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2443390 Lrch1 "leucine-rich repeats and calponin homology (CH) domain containing 1" [Mus musculus (taxid:10090)]

 Score = 298 (110.0 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 56/69 (81%), Positives = 63/69 (91%)

Query:     1 MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
             ++L E+LG AL DGVVLCHLANHVRPRSVASIHVPSPAVPKL+MA+CRRNV+NFLEACRK
Sbjct:   609 VTLHEDLGAALMDGVVLCHLANHVRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRK 668

Query:    61 IGVEEGDLC 69
             +GV E  LC
Sbjct:   669 LGVPEEKLC 677

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2147870 Lrch2 "leucine-rich repeats and calponin homology (CH) domain containing 2" [Mus musculus (taxid:10090)]

 Score = 290 (107.1 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 51/67 (76%), Positives = 62/67 (92%)

Query:     3 LPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIG 62
             LP+++G AL DGVVLCHLANH+RPRSVASIHVPSPAVPKL+MA+CRRNV+NFL+AC+K+G
Sbjct:   672 LPDDIGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLDACKKLG 731

Query:    63 VEEGDLC 69
             V +  LC
Sbjct:   732 VSQERLC 738

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0032633 Lrch "Leucine-rich-repeats and calponin homology domain protein" [Drosophila melanogaster (taxid:7227)]

 Score = 292 (107.8 bits), Expect = 1.9e-24, P = 1.9e-24
 Identities = 54/75 (72%), Positives = 65/75 (86%)

Query:     1 MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
             M+LP ++  AL+DGV+LCHLAN+VRPRSVASIHVPSP V KLTMARCRRNVDNFLEACR+
Sbjct:   682 MTLPVDIASALTDGVILCHLANYVRPRSVASIHVPSPGVNKLTMARCRRNVDNFLEACRR 741

Query:    61 IGVEEGDLCDRDSIV 75
             IGV+E  +C  + +V
Sbjct:   742 IGVDEELICSCEDVV 756

GO:0007265 "Ras protein signal transduction" evidence=ISS

GO:0005938 "cell cortex" evidence=IDA

GO:0032154 "cleavage furrow" evidence=IDA

UNIPROTKB|O75427 LRCH4 "Leucine-rich repeat and calponin homology domain-containing protein 4" [Homo sapiens (taxid:9606)]

 Score = 255 (94.8 bits), Expect = 9.6e-22, Sum P(2) = 9.6e-22
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query:     3 LPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIG 62
             LPE+L  AL+ GV+LC LAN +RPRSV  IHVPSPAVPKL+  + R+NV++FLEACRK+G
Sbjct:   556 LPEDLAEALASGVILCQLANQLRPRSVPFIHVPSPAVPKLSALKARKNVESFLEACRKMG 615

Query:    63 VEEGDLCDRDSIVDATQGSLST 84
             V E DLC    ++  T   L T
Sbjct:   616 VPEADLCSPSDLLQGTARGLRT 637

GO:0007399 "nervous system development" evidence=TAS

GO:0016605 "PML body" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

RGD|1306145 Lrch4 "leucine-rich repeats and calponin homology (CH) domain containing 4" [Rattus norvegicus (taxid:10116)]

 Score = 261 (96.9 bits), Expect = 1.6e-21, P = 1.6e-21
 Identities = 49/83 (59%), Positives = 62/83 (74%)

Query:     3 LPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIG 62
             LPE+L  AL++GV+LC LAN +RPRSV  IHVPSPAVPKL+  + R+NV+NFLEACRK+G
Sbjct:   559 LPEDLAEALANGVILCQLANQLRPRSVPFIHVPSPAVPKLSALKSRKNVENFLEACRKMG 618

Query:    63 VEEGDLCDRDSIVDATQGSLSTL 85
             V E DLC    ++  T   L T+
Sbjct:   619 VPEADLCSPSDLLRGTAQGLQTI 641

GO:0005737 "cytoplasm" evidence=ISO

GO:0016605 "PML body" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

UNIPROTKB|F1RMY1 LRCH4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 257 (95.5 bits), Expect = 4.4e-21, P = 4.4e-21
 Identities = 50/84 (59%), Positives = 63/84 (75%)

Query:     3 LPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIG 62
             LPE+L  AL+ GV+LC LAN +RPRSV  IHVPSPAVPKL+  + R+NV++FLEACRK+G
Sbjct:   563 LPEDLAEALASGVILCQLANQLRPRSVPFIHVPSPAVPKLSALKSRKNVESFLEACRKMG 622

Query:    63 VEEGDLCDRDSIVDAT-QGSLSTL 85
             V E DLC    ++  T QG  +TL
Sbjct:   623 VPEADLCSPSDLLQGTAQGLWTTL 646

GO:0016605 "PML body" evidence=IEA

UNIPROTKB|F1MV58 LRCH4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 231 (86.4 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 43/74 (58%), Positives = 57/74 (77%)

Query:     3 LPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIG 62
             LP++L  AL++GV+LC LAN +RPR V  IHVPSPAVPKL+  + R+NV++FLEACRK+G
Sbjct:   562 LPDDLAEALANGVILCQLANQLRPRCVPFIHVPSPAVPKLSALKSRKNVESFLEACRKMG 621

Query:    63 VEEGDLCDRDSIVD 76
             V E  LC    I++
Sbjct:   622 VPEESLCQPHHILE 635

GO:0016605 "PML body" evidence=IEA

DICTYBASE|DDB_G0292664 DDB_G0292664 "calponin homology (CH) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 98 (39.6 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 28/63 (44%), Positives = 34/63 (53%)

Query:     6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEE 65
             +L  AL  GV+LC L N + P S  S   PS A P + M     NV+NFL  C+K GV  
Sbjct:    43 DLMAALKSGVILCKLGNKIAPGSCKSS--PSSA-PFVQM----ENVNNFLNLCKKQGVAT 95

Query:    66 GDL 68
              DL
Sbjct:    96 TDL 98

GO:0031032 "actomyosin structure organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y2L9	LRCH1_HUMAN	No assigned EC number	0.8115	0.7840	0.0947	yes	N/A
P62046	LRCH1_MOUSE	No assigned EC number	0.8115	0.7840	0.0973	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	88
smart00033	101	smart00033, CH, Calponin homology domain	7e-13
cd00014	107	cd00014, CH, Calponin homology domain; actin-bindi	2e-09
pfam00307	104	pfam00307, CH, Calponin homology (CH) domain	6e-07

>gnl|CDD|214479 smart00033, CH, Calponin homology domain

 Score = 58.1 bits (141), Expect = 7e-13
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 10 ALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLC 69
           L DGV LC L N + P  V    V       L+  +   N++  L    K+G +   L 
Sbjct: 25 DLKDGVALCALLNSLSPGLVDKKKVA----ASLSRFKKIENINLALSFAEKLGGKV-VLF 79

Query: 70 DRDSIVD 76
          + + +V+
Sbjct: 80 EPEDLVE 86

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p. Length = 101

>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

 Score = 50.0 bits (120), Expect = 2e-09
 Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 7/62 (11%)

Query: 5  EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMA-RCRRNVDNFLEACRKIGV 63
                L DG+ LC L N + P  +                 +   N++  L    K+GV
Sbjct: 23 NNFSTDLKDGIALCKLLNSLSPDLI------DKKKINPLSRFKRLENINLALNFAEKLGV 76

Query: 64 EE 65
            
Sbjct: 77 PV 78

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav). Length = 107

>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain

 Score = 43.0 bits (102), Expect = 6e-07
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 10 ALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEAC-RKIGV 63
           L DG+ LC L N +RP  +                    N++  LE   +K+GV
Sbjct: 26 DLRDGLALCALLNKLRPGLI------DLKKVNKNRFDKLENLNLALEFAEKKLGV 74

The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
KOG2046|consensus	193		99.91
KOG0532|consensus	722		99.83
KOG2996|consensus	865		99.74
cd00014	107	CH Calponin homology domain; actin-binding domain	99.72
COG5199	178	SCP1 Calponin [Cytoskeleton]	99.71
smart00033	103	CH Calponin homology domain. Actin binding domains	99.65
KOG2128|consensus	1401		99.53
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	99.47
COG5261	1054	IQG1 Protein involved in regulation of cellular mo	99.45
PF11971	85	CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T	99.0
KOG0046|consensus	627		98.8
PF06395	89	CDC24: CDC24 Calponin; InterPro: IPR010481 This is	98.4
COG5069	612	SAC6 Ca2+-binding actin-bundling protein fimbrin/p	97.16
KOG0517|consensus	2473		96.17
KOG0046|consensus	627		94.57
PF06294	158	DUF1042: Domain of Unknown Function (DUF1042); Int	89.92

>KOG2046|consensus

Probab=99.91  E-value=2.8e-25  Score=152.85  Aligned_cols=74  Identities=28%  Similarity=0.447  Sum_probs=67.1

Q ss_pred             CchhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526           2 SLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS   81 (88)
Q Consensus         2 ~~~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~   81 (88)
                      +++++|.+.|+||++||+|+|+|+|+++++++.+.      ..|.+||||+.|+++|+.+||++.++|+++||||+||+.
T Consensus        43 ~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~------~~f~qmEnIs~Fi~a~~~ygv~~~d~FqtvDLfE~kd~~  116 (193)
T KOG2046|consen   43 PARGDFQDLLKDGVILCKLINKLYPGVVKKINESK------MAFVQMENISNFIKAAKKYGVPEVDLFQTVDLFEGKDMA  116 (193)
T ss_pred             CcccCHHHHHcchHHHHHHHHHhCcCccccccccc------ccHHHHHHHHHHHHHHHhcCCChhhcccccccccCCCHH
Confidence            46789999999999999999999998777777543      269999999999999999999999999999999999964

>KOG0532|consensus

Probab=99.83  E-value=2.1e-21  Score=150.94  Aligned_cols=77  Identities=78%  Similarity=1.286  Sum_probs=75.1

Q ss_pred             CCchhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCccccc
Q psy5526           1 MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDA   77 (88)
Q Consensus         1 ~~~~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~   77 (88)
                      |++|+||..+|.|||+||+|+|.++|.+|..|+.++...+++++.+|+.|+.+||+|||++||||.+++.+.|+..+
T Consensus       591 ~sLp~Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCRkiGVpEa~lCS~~Dilq~  667 (722)
T KOG0532|consen  591 VSLPEDLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACRKIGVPEADLCSPMDILQK  667 (722)
T ss_pred             ccCchhHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHHHcCCChHhhcCHHHhhhh
Confidence            68999999999999999999999999999999999888999999999999999999999999999999999999988

>KOG2996|consensus

Probab=99.74  E-value=9.6e-19  Score=136.21  Aligned_cols=79  Identities=35%  Similarity=0.674  Sum_probs=69.8

Q ss_pred             hHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHH-HHhCCCCCCCCCCCcccccCCC--
Q psy5526           6 ELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEAC-RKIGVEEGDLCDRDSIVDATQG--   80 (88)
Q Consensus         6 ~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~kn~--   80 (88)
                      +|.++|||||+||+|+|.+.|++|.  +|+..    ||+++|.|..||+.||.+| ..+|+.+++||++.|||+-+++  
T Consensus        32 dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~r----pQmSqFLClkNIrtFl~~C~~~Fglr~seLF~afDLfdv~dFgK  107 (865)
T KOG2996|consen   32 DLAQALRDGVLLCQLLNNLVPHSIDLKEINLR----PQMSQFLCLKNIRTFLMFCCEKFGLRDSELFEAFDLFDVRDFGK  107 (865)
T ss_pred             HHHHHHhhhhHHHHHHhhcCCCcccHHHhhcC----CCccchhhHhhHHHHHHHHHHHhCCchhhhcchhhhhhhhhHHH
Confidence            6899999999999999999999986  57753    6778999999999999999 5699999999999999999984  


Q ss_pred             ---ceeccccC
Q psy5526          81 ---SLSTLSNT   88 (88)
Q Consensus        81 ---~~~~~~~~   88 (88)
                         .|++||+|
T Consensus       108 Vi~tlS~LS~t  118 (865)
T KOG2996|consen  108 VIKTLSRLSHT  118 (865)
T ss_pred             HHHHHHHhccC
Confidence               46666665

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=99.72  E-value=8.2e-18  Score=104.18  Aligned_cols=73  Identities=23%  Similarity=0.391  Sum_probs=62.9

Q ss_pred             hhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCce
Q psy5526           4 PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGSL   82 (88)
Q Consensus         4 ~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~~   82 (88)
                      .++|.+.|+||++||+|+|.+.|+.++.....     ....+.+++||+.|+++|+++|+|.. +|+++||++.+|+..
T Consensus        22 v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~-----~~~~~~~~~Ni~~~l~~~~~~gi~~~-~~~~~Dl~~~~n~~~   94 (107)
T cd00014          22 INNFSTDLKDGIALCKLLNSLSPDLIDKKKIN-----PLSRFKRLENINLALNFAEKLGVPVV-NFDAEDLVEDGDEKL   94 (107)
T ss_pred             HHHHHHHHhchHHHHHHHHHHCcccccccccc-----ccchhhHHHHHHHHHHHHHHcCCcee-ccCHHHHhhCCCcee
Confidence            46899999999999999999999998765532     12368999999999999999999998 899999998888543

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>COG5199 SCP1 Calponin [Cytoskeleton]

Probab=99.71  E-value=1.6e-18  Score=115.87  Aligned_cols=72  Identities=24%  Similarity=0.397  Sum_probs=62.8

Q ss_pred             hhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCce
Q psy5526           4 PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGSL   82 (88)
Q Consensus         4 ~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~~   82 (88)
                      |.+|.+.|+|||+||++.|.-.|+.|+   +.++++    .|.+||||+.|+++.+.++||+.++|++.||||.||...
T Consensus        33 pgdll~~lkdGv~lCril~ea~~~~I~---yKeSkm----pFVQmenIs~Fin~~~k~~vpe~elFQT~DLFE~kd~~q  104 (178)
T COG5199          33 PGDLLSLLKDGVRLCRILNEASPLDIK---YKESKM----PFVQMENISSFINGLKKLRVPEYELFQTNDLFEAKDLRQ  104 (178)
T ss_pred             cccHHHHHhcchHHHHHHhhcCcccce---ecccCC----ceeeHHHHHHHHHHHHHhCCCHHHHHHhhhHHhhcCHHH
Confidence            568999999999999999999988754   333333    599999999999999999999999999999999999643

>smart00033 CH Calponin homology domain

Probab=99.65  E-value=1.5e-16  Score=97.57  Aligned_cols=69  Identities=29%  Similarity=0.447  Sum_probs=58.9

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k   78 (88)
                      ++|.+.|+||++||+|+|.+.|+.++++....    +...|.+++|++.|+++|++.| +...+|++.||++++
T Consensus        22 ~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~----~~~~~~~~~Ni~~~l~~~~~~g-~~~~~~~~~Dl~~~~   90 (103)
T smart00033       22 TNFSSDLSDGVALCKLLNSLSPGSVDKKKVNA----SLSRFKKIENINLALSFAEKLG-GKLVLFEPEDLVEGN   90 (103)
T ss_pred             HHHHHHHccHHHHHHHHHHHCCCcCChhhccc----cccHHHHHHhHHHHHHHHHHcC-CeeeccCHHHHhhcc
Confidence            57999999999999999999999998655321    1247899999999999999998 456799999999984

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.

>KOG2128|consensus

Probab=99.53  E-value=6.3e-15  Score=122.11  Aligned_cols=71  Identities=23%  Similarity=0.296  Sum_probs=64.1

Q ss_pred             hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526           6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS   81 (88)
Q Consensus         6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~   81 (88)
                      +|.++|||||+|++|.|.+.|+.--.|+....     -.|+|.+||+.|+++.+++|+|+.+.|++.|+|||||++
T Consensus        64 ele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~-----~~frHtdNi~q~~~~me~iglP~iF~~E~~Dvy~~kN~p  134 (1401)
T KOG2128|consen   64 ELEEGLRNGVYLAKLGQFFAPDLEQTIYKAND-----LHFRHTDNINQWLRAMESIGLPEIFYPETTDVYEGKNIP  134 (1401)
T ss_pred             HHHHHhhhhhHHHHHHhhcCCcceeeeeecCC-----ceeecchhHHHHHHHHhhcCCCcccccchhhhhcCCCCc
Confidence            69999999999999999999987666665432     159999999999999999999999999999999999988

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=99.47  E-value=7.3e-14  Score=86.36  Aligned_cols=70  Identities=26%  Similarity=0.387  Sum_probs=55.6

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .+|.+.|+||++||+|+|.+.|+.++.-..++.  .+ +.+.+++||..|+++|++ +|+|...  ++.||++++|
T Consensus        22 ~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~--~~-~~~~~~~Ni~~~l~~~~~~lg~~~~~--~~~dl~~~~~   92 (108)
T PF00307_consen   22 TNFSEDLRDGVVLCKLINKLFPGTIDLKKINPN--LK-SPFDKLENIELALEAAEKKLGIPPLL--SPEDLVEKGD   92 (108)
T ss_dssp             SSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTS--SS-SHHHHHHHHHHHHHHHHHHTTSSCTS---HHHHHSTT-
T ss_pred             CcHHHHhcCHHHHHHHHHHHhhccchhhhcccc--ch-hhhHHHHHHHHHHHHHHHHcCCCCCC--CHHHHHHCcC
Confidence            368899999999999999999998853222211  12 579999999999999988 9999855  9999997666

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]

Probab=99.45  E-value=3.5e-14  Score=113.95  Aligned_cols=74  Identities=24%  Similarity=0.396  Sum_probs=66.8

Q ss_pred             chhh-HHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526           3 LPEE-LGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS   81 (88)
Q Consensus         3 ~~~~-~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~   81 (88)
                      +|+. |.++||+||.|++|.+++.|+.+.+|....    ++ +|+|++||+.||.....+|+|+.+-|+..||||+||++
T Consensus        61 l~~~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~----~L-QfrHtdNIN~Fld~i~~vGlPe~FhFEl~DlYekKN~p  135 (1054)
T COG5261          61 LPELCFEDSLRNGVFLAKLTQRFNPDLTTVIFPAD----KL-QFRHTDNINAFLDLIEHVGLPESFHFELQDLYEKKNIP  135 (1054)
T ss_pred             CchhhHHHHHhccchHHHHHHHhCCCceeEeeecc----cc-eeeccccHHHHHhHhhhcCCcceeeeehHhhhccCCcc
Confidence            4443 899999999999999999999999988653    22 79999999999999999999999999999999999964

>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins

Probab=99.00  E-value=8.6e-10  Score=67.61  Aligned_cols=67  Identities=24%  Similarity=0.424  Sum_probs=56.3

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHH-HhCCCCCCCCCCCcccc
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACR-KIGVEEGDLCDRDSIVD   76 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~-~~Gv~~~~lF~~~DL~e   76 (88)
                      ++|...++||++||.|++...|+.++  .|...    ++++.+.+..|+..+.++|. .+|.+...+ +++|+..
T Consensus        14 ~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~----~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l-~~edl~~   83 (85)
T PF11971_consen   14 EDLTQDLSDGRALCALIHFYCPQLLPLEDICLK----TTMSQADSLYNLQLLNSFCQSHLGFSCCHL-EPEDLLY   83 (85)
T ss_pred             hhhhhhhccHHHHHHHHHHhCcceecHhHcccc----cchHHHHhhhhHHHHHHHHHHHcCCCcCcC-CHHHHhc
Confidence            47889999999999999999999997  45543    34578999999999999995 489887776 8888864

>KOG0046|consensus

Probab=98.80  E-value=9.8e-10  Score=85.35  Aligned_cols=69  Identities=23%  Similarity=0.406  Sum_probs=61.5

Q ss_pred             hHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           6 ELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         6 ~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      +|++..+||++|||++|.-.|++|.  .|+...    .+..|.+.||.+.-|..++++|+....+ .+.||-|||.
T Consensus       150 ~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk----~Lnp~~~~EN~~l~lnSAkAiGc~VvNI-ga~Dl~eGrp  220 (627)
T KOG0046|consen  150 DLFDLVKDGVLLCKLINLSVPDTIDERAINTKK----KLNPFERNENLNLALNSAKAIGCTVVNI-GAQDLAEGRP  220 (627)
T ss_pred             HHHHHhccceeeehhhcccCCCchhhhhhccCC----cCChhhhccchhhHHhhcccccceEEec-CchhhhcCCc
Confidence            5999999999999999999999997  477432    3568999999999999999999998886 9999999986

>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain

Probab=98.40  E-value=4.3e-07  Score=56.13  Aligned_cols=69  Identities=20%  Similarity=0.478  Sum_probs=54.7

Q ss_pred             hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHH-HHhCCCCCCCCCCCcccccC
Q psy5526           6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEAC-RKIGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~k   78 (88)
                      .+++.+|-|.=||-+.|++.|..--.|+..+..    ..=.|...|-.|+.+| .++|+|+.++|...|||...
T Consensus         5 ~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~~~----~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~d   74 (89)
T PF06395_consen    5 QLWKLFRQGYPLCVLFNALQPEEPLPVDPVSSD----DLKVCKKAIYKFIQACKQELGFPDEELFTISDLYGDD   74 (89)
T ss_pred             HHHHHHhCcCcHHHHHHccCCccCCCCCCCCcc----hHHHHHHHHHHHHHHHHHhcCCCccceeeeeccccCC
Confidence            588999999999999999999853345332211    1235778999999999 56999999999999999753

>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

Probab=97.16  E-value=0.00063  Score=53.25  Aligned_cols=59  Identities=20%  Similarity=0.330  Sum_probs=46.9

Q ss_pred             hHHHHccchHHHHHHHHhhcCCCCC-cccC-CCCCCcchhhhHHHHHHHHHHHHHHHhCCCC
Q psy5526           6 ELGPALSDGVVLCHLANHVRPRSVA-SIHV-PSPAVPKLTMARCRRNVDNFLEACRKIGVEE   65 (88)
Q Consensus         6 ~~~~~LrdGv~LC~L~N~l~P~~i~-~I~~-~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~   65 (88)
                      +|..+-|||.++|+|+|..+|+++. .+.. ... ......|++.||-+.|+...+.+|+-+
T Consensus       149 df~rswrdGLaf~aLIh~~rPDtld~n~ld~qkk-nk~~n~~qafe~a~k~Igi~rli~ved  209 (612)
T COG5069         149 DFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQKK-NKALNNFQAFENANKVIGIARLIGVED  209 (612)
T ss_pred             HHHHHhhhhHHHHHHHhhcCCcccCccccchhhc-ccchhHHHHHHHHHHhhchHhhcCcce
Confidence            6899999999999999999999875 3322 211 123468999999999999999999743

>KOG0517|consensus

Probab=96.17  E-value=0.013  Score=52.03  Aligned_cols=68  Identities=22%  Similarity=0.300  Sum_probs=55.3

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .|++..||||+.|-+|+..|.....+|-+....      ...|.||++.-|++.+.-.|+-..+ .+.|+.+|.-
T Consensus        69 ~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRM------RIH~LENvdKaLqFLkeqkVhLEni-GshDIVDGN~  136 (2473)
T KOG0517|consen   69 GDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRM------RIHCLENVDKALQFLKEQKVHLENI-GSHDIVDGNH  136 (2473)
T ss_pred             HHHHHHHhhhHHHHHHHHHHccccCCCCCCCce------eehhHhhhHHHHHHHHhcccccccC-CcccccCCcc
Confidence            478999999999999999999887776655432      4678999999999998876766555 8899998754

>KOG0046|consensus

Probab=94.57  E-value=0.081  Score=42.12  Aligned_cols=71  Identities=24%  Similarity=0.328  Sum_probs=54.0

Q ss_pred             hHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           6 ELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         6 ~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      ++++.||||.||-++..++.||.|.  +++++++  |-...|+..||=+.-.+.-+..+.+-..+ .-.||++|-.
T Consensus       408 ~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~--~~~~~~kklENcNyav~lGk~~~FSLVgi-~G~DI~dGNk  480 (627)
T KOG0046|consen  408 NLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPS--PLKMPFKKVENCNYAVKLGKQLKFSLVGI-AGQDIVDGNK  480 (627)
T ss_pred             HHHHhhhhhhHHHHHHHHccCCccchhhccCCCC--cccccHHHhhcchHHHHHHhhcceeeecc-ccccccccch
Confidence            5899999999999999999999885  3554431  11135899999998888777777665554 6788888754

>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function

Probab=89.92  E-value=0.54  Score=31.62  Aligned_cols=57  Identities=18%  Similarity=0.343  Sum_probs=36.8

Q ss_pred             hhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHH-HHHHHHhCCC
Q psy5526           4 PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNF-LEACRKIGVE   64 (88)
Q Consensus         4 ~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~F-L~~c~~~Gv~   64 (88)
                      +.++...+.||+++++++....|..|.--+.+..    .+.-..++|-..| -+..+.+|++
T Consensus        14 ~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~----~s~~~Kl~NW~~Ln~kvl~kl~~~   71 (158)
T PF06294_consen   14 PKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNG----NSVAQKLNNWETLNEKVLKKLGIK   71 (158)
T ss_dssp             SS-HHHHHTTSHHHHHHHHHH-TTT---SS--------SSHHHHHHHHHHHHHHTTGGGT--
T ss_pred             CCchHHHcccccHHHHHHHHHCCCCccccccCCC----CCHHHHHHHHHHHHHHHHHHcCCC
Confidence            3468889999999999999999998874333321    1344567888888 7777888874

; PDB: 2EE7_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	88
1h67_A	108	Nmr Structure Of The Ch Domain Of Calponin Length =		1e-05
1wyp_A	136	Solution Structure Of The Ch Domain Of Human Calpon		7e-05
1wyr_A	121	Solution Structure Of The Ch Domain Of Human Rho Gu		2e-04
2d86_A	143	Solution Structure Of The Ch Domain From Human Vav-		6e-04

>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin Length = 108

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 10 ALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLC 69
           L DGV+LC L N ++P SV  ++ P     KL       N+ NFL A +  GV+  D+ 
Sbjct: 27 GLKDGVILCELINKLQPGSVQKVNDPVQNWHKL------ENIGNFLRAIKHYGVKPHDIF 80
Query: 70 DRDSIVDAT 78
          + + + + T
Sbjct: 81 EANDLFENT 89

>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1 Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 10  ALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLC 69
            L DG++LC   N ++P SV  I+  +    +L       N+ NF++A  K GV+  D+ 
Sbjct: 41  GLKDGIILCEFINKLQPGSVKKINESTQNWHQL------ENIGNFIKAITKYGVKPHDIF 94
Query: 70  DRDSIVDAT 78
           + + + + T
Sbjct: 95  EANDLFENT 103

>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine Nucleotide Exchange Factor 6 Length = 121

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 4   PEE-LGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIG 62
           PEE L  +L +GVVLC L N + P SV    +     P+ T A C  N+++FL+ C  + 
Sbjct: 31  PEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLD----PQ-TEADCINNINDFLKGCATLQ 85
Query: 63  VEEGDLCDRDSIVDATQGSLSTL 85
           VE  D  D  S V+ ++  LSTL
Sbjct: 86  VEIFDPDDLYSGVNFSK-VLSTL 107

>pdb|2D86|A Chain A, Solution Structure Of The Ch Domain From Human Vav-3 Protein Length = 143

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 6   ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEA-CRKIGVE 64
           +L   L DGV+LC L N++R  S+    +     P+++   C +N+  FL A C   G+ 
Sbjct: 39  DLAQTLRDGVLLCQLLNNLRAHSINLKEI--NLRPQMSQFLCLKNIRTFLTACCETFGMR 96
Query: 65  EGDLCDRDSIVD 76
           + +L +   + D
Sbjct: 97  KSELFEAFDLFD 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	88
1h67_A	108	Calponin alpha; cytoskeleton, calponin homology do	3e-21
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	4e-18
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	5e-18
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	2e-17
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	7e-17
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	1e-16
3i6x_A	193	P195, RAS GTPase-activating-like protein iqgap1; a	1e-16
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	4e-16
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	1e-15
1wyr_A	121	RHO guanine nucleotide exchange factor 6; CH domai	2e-14
2l3g_A	126	RHO guanine nucleotide exchange factor 7; structur	5e-13
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	3e-09

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Length = 108

 Score = 79.4 bits (196), Expect = 3e-21
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 1  MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
            + +     L DGV+LC L N ++P SV  ++ P              N+ NFL A + 
Sbjct: 18 RRIGDNFMDGLKDGVILCELINKLQPGSVQKVNDPVQN------WHKLENIGNFLRAIKH 71

Query: 61 IGVEEGDLCDRDSIVDATQ 79
           GV+  D+ + + + + T 
Sbjct: 72 YGVKPHDIFEANDLFENTN 90

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 159

 Score = 72.6 bits (178), Expect = 4e-18
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 4  PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
                +L +GVVL  L    +P  +  I   +         R   N++ FL+    IG+
Sbjct: 31 TSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNE-----LQFRHSDNINKFLDFIHGIGL 85

Query: 64 EEGDLCDRDSIVD 76
           E    +   I +
Sbjct: 86 PEIFHFELTDIYE 98

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 136

 Score = 71.8 bits (176), Expect = 5e-18
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
             +       L DG++LC   N ++P SV  I+  +             N+ NF++A  K
Sbjct: 32  RRIGNNFMDGLKDGIILCEFINKLQPGSVKKINESTQNW------HQLENIGNFIKAITK 85

Query: 61  IGVEEGDLCDRDSIVDATQ 79
            GV+  D+ + + + + T 
Sbjct: 86  YGVKPHDIFEANDLFENTN 104

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Length = 144

 Score = 70.4 bits (172), Expect = 2e-17
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 5   EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVE 64
                 L +GV+L  L N + P     + VP    P   + +    V  FL+A    GV 
Sbjct: 34  LGFQVWLKNGVILSKLVNSLYPEGSKPVKVPEN--PPSMVFKQMEQVAQFLKAAEDYGVI 91

Query: 65  EGDLCDRDSIVDAT 78
           + D+     + +  
Sbjct: 92  KTDMFQTVDLYEGK 105

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Length = 190

 Score = 70.4 bits (172), Expect = 7e-17
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 4   PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMA----RCRRNVDNFLEACR 59
             EL   L +GV L  L N   P+ V+   +      +        R   NV  +L A  
Sbjct: 45  TTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMD 104

Query: 60  KIGVEEGDLCDRDSIVD 76
           +IG+ +    +   I D
Sbjct: 105 EIGLPKIFYPETTDIYD 121

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 203

 Score = 70.0 bits (171), Expect = 1e-16
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 4   PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
                 +L +GVVL  L    +P  +  I   +         R   N++ FL+    IG+
Sbjct: 75  TSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNE-----LQFRHSDNINKFLDFIHGIGL 129

Query: 64  EEGDLCDRDSIVD 76
            E    +   I +
Sbjct: 130 PEIFHFELTDIYE 142

>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Length = 193

 Score = 69.7 bits (170), Expect = 1e-16
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 4   PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMA----RCRRNVDNFLEACR 59
             EL   L +GV L  L N   P+ V+   +      +        R   NV  +L A  
Sbjct: 67  TTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMD 126

Query: 60  KIGVEEGDLCDRDSIVD 76
           +IG+ +    +   I D
Sbjct: 127 EIGLPKIFYPETTDIYD 143

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Length = 155

 Score = 67.3 bits (164), Expect = 4e-16
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 4   PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
            E     L DG VLC L N + P   A +     +       +    +  FL+A  + G+
Sbjct: 41  RENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMA---FKQMEQISQFLQAAERYGI 97

Query: 64  EEGDLCDRDSIVDAT 78
              D+     + +  
Sbjct: 98  NTTDIFQTVDLWEGK 112

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 146

 Score = 66.1 bits (161), Expect = 1e-15
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 1   MSLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK 60
           +S+  +    L DG +LC L N ++P SV  I+        +       N+ NF++A   
Sbjct: 32  LSIGPDFQKGLKDGTILCTLMNKLQPGSVPKIN------RSMQNWHQLENLSNFIKAMVS 85

Query: 61  IGVEEGDLCDRDSIVDAT 78
            G+   DL + + + ++ 
Sbjct: 86  YGMNPVDLFEANDLFESG 103

>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 121

 Score = 62.2 bits (151), Expect = 2e-14
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 5   EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV- 63
           E L  +L +GVVLC L N + P SV    +        T A C  N+++FL+ C  + V 
Sbjct: 33  EFLKSSLKNGVVLCKLINRLMPGSVEKFCLDPQ-----TEADCINNINDFLKGCATLQVE 87

Query: 64  --EEGDLCDRDSIVDATQGSLSTLSNT 88
             +  DL    +       +L  ++  
Sbjct: 88  IFDPDDLYSGVNFS-KVLSTLLAVNKA 113

>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Length = 126

 Score = 58.9 bits (142), Expect = 5e-13
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 12/90 (13%)

Query: 4   PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
              L  +L DGVVLC L   + P ++  ++         + + C  N+  FL  C     
Sbjct: 38  EGFLQASLKDGVVLCRLLERLLPGTIEKVYPEP-----RSESECLSNIREFLRGCG--AS 90

Query: 64  EEGDLCDRDSIVDAT-----QGSLSTLSNT 88
              +  D + +           SL TL+  
Sbjct: 91  LRLETFDANDLYQGQNFNKVLSSLVTLNKV 120

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587

 Score = 50.8 bits (121), Expect = 3e-09
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 6   ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVE 64
           EL  AL DGV+LC L N++ P ++    V     P+++   C +N+  FL  C +  G++
Sbjct: 35  ELAQALRDGVLLCQLLNNLLPHAINLREV--NLRPQMSQFLCLKNIRTFLSTCCEKFGLK 92

Query: 65  EGDLCDRDSIVDAT 78
             +L +   + D  
Sbjct: 93  RSELFEAFDLFDVQ 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
1h67_A	108	Calponin alpha; cytoskeleton, calponin homology do	99.96
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	99.95
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	99.95
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	99.95
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	99.94
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	99.94
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	99.93
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	99.93
3i6x_A	193	P195, RAS GTPase-activating-like protein iqgap1; a	99.93
2l3g_A	126	RHO guanine nucleotide exchange factor 7; structur	99.93
1wyr_A	121	RHO guanine nucleotide exchange factor 6; CH domai	99.92
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	99.86
2yrn_A	129	Neuron navigator 2 isoform 4; calponin homolgy dom	99.55
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	99.52
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	99.38
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	99.34
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	99.32
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	99.24
2qjz_A	123	Microtubule-associated protein RP/EB family member	99.19
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	99.15
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	99.15
1wyo_A	159	Protein EB3, microtubule-associated protein RP/EB	99.14
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	99.08
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	98.96
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	98.89
2vzc_A	131	Alpha-parvin; membrane, cytoplasm, cytoskeleton, c	98.85
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	98.83
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	98.65
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	98.38
1wjo_A	124	T-plastin; CH domain, actin binding, structural ge	98.36
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	97.77
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	97.71
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	97.64
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	97.64
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	97.61
1wyl_A	116	NEDD9 interacting protein with calponin homology a	97.59
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	97.54
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	97.39
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	97.3
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	97.29
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	97.22
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	97.14
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	97.11
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	97.02
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	96.62
2r8u_A	268	Microtubule-associated protein RP/EB family member	96.54
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	96.48
4abo_I	145	MAL3, microtubule integrity protein MAL3; structur	95.53
2qjx_A	127	Protein BIM1; calponin homology domain, protein bi	94.43
2ee7_A	127	Sperm flagellar protein 1; all alpha protein, CH d	87.89
1wix_A	164	HOOK homolog 1, RSGI RUH-026; structural genomics,	84.09

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1

Probab=99.96  E-value=4.4e-30  Score=162.28  Aligned_cols=74  Identities=28%  Similarity=0.530  Sum_probs=68.5

Q ss_pred             CchhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526           2 SLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS   81 (88)
Q Consensus         2 ~~~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~   81 (88)
                      ++|++|+++||||++||+|+|+++|++|++|+.+.      ..|+++|||+.||+||+++|+|+.++|++.||||+||++
T Consensus        19 ~~~~~l~~~L~dGvvLCkL~N~l~P~~v~ki~~~~------~~f~~~eNI~~Fl~a~~~~Gv~~~~lF~~~DL~e~kn~~   92 (108)
T 1h67_A           19 RIGDNFMDGLKDGVILCELINKLQPGSVQKVNDPV------QNWHKLENIGNFLRAIKHYGVKPHDIFEANDLFENTNHT   92 (108)
T ss_dssp             CCCSCHHHHHHHCSHHHHHHHHHSTTSSTTCCCTT------SSHHHHHHHHHHHHHHHHHTSCGGGSCCHHHHHHTCCSH
T ss_pred             CCcHHHHHHHccHHHHHHHHHHhCCCCcccccccc------cchHHHHHHHHHHHHHHHcCCCcccccChhHHHhCCChH
Confidence            46789999999999999999999999999998642      369999999999999999999999999999999999964

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.95  E-value=5e-29  Score=163.07  Aligned_cols=74  Identities=26%  Similarity=0.496  Sum_probs=68.6

Q ss_pred             CchhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526           2 SLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS   81 (88)
Q Consensus         2 ~~~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~   81 (88)
                      +++++|+++||||++||+|+|+++|++|++|+.+.      ..|+++|||+.||+||+++|||+.++|++.||||+||++
T Consensus        33 ~~~~~l~~~L~DGvvLCkL~N~l~P~~v~ki~~~~------~~f~~~eNI~~Fl~a~~~~Gv~~~~lF~~~DL~e~kn~~  106 (136)
T 1wyp_A           33 RIGNNFMDGLKDGIILCEFINKLQPGSVKKINEST------QNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHT  106 (136)
T ss_dssp             CCCSCTTHHHHTSHHHHHHHHHHSTTSSSCCCCSS------CSHHHHHHHHHHHHHHHHHTCCGGGCCCHHHHHSCSCSH
T ss_pred             CCcHHHHHHHccHHhHHHHHHhhCCCCcccccccc------cchHHHHHHHHHHHHHHHcCCCcccccCchHHhcCCCHH
Confidence            46789999999999999999999999999997642      369999999999999999999999999999999999965

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.95  E-value=1.3e-28  Score=162.72  Aligned_cols=74  Identities=26%  Similarity=0.446  Sum_probs=68.7

Q ss_pred             CchhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526           2 SLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS   81 (88)
Q Consensus         2 ~~~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~   81 (88)
                      +++++|+++||||++||+|+|+++|++|++|+.+.      ..|+++|||+.||+||+++|||+.++|++.||||+||++
T Consensus        33 ~i~~~l~~~L~DGvvLCkL~N~l~P~~v~kin~~~------~~f~~~eNI~~FL~a~~~~Gv~~~~lF~~~DL~e~kn~~  106 (146)
T 1wyn_A           33 SIGPDFQKGLKDGTILCTLMNKLQPGSVPKINRSM------QNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMT  106 (146)
T ss_dssp             CCCSCHHHHHHTTSHHHHHHHHHCTTSCSCCCCSS------CHHHHHHHHHHHHHHHHHHTCCSSSCCCHHHHHTCSCSH
T ss_pred             CCcHHHHHHHccHHHHHHHHHHhCCCCcccccccc------ccccHHHHHHHHHHHHHHcCCCcccccChhHHHhcCChH
Confidence            46789999999999999999999999999998642      379999999999999999999999999999999999965

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1

Probab=99.95  E-value=3.3e-28  Score=160.51  Aligned_cols=71  Identities=24%  Similarity=0.367  Sum_probs=65.1

Q ss_pred             hhHHHHccchHHHHHHHHhhcC---CCCC-cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRP---RSVA-SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQG   80 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P---~~i~-~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~   80 (88)
                      ++|+++|||||+||+|+|+++|   ++|+ +|+.+.      ..|+++|||+.||+||+++|||+.++|++.||||+||+
T Consensus        34 ~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~kin~~~------~~f~~~eNI~~FL~ac~~~Gv~~~~lF~t~DL~e~kn~  107 (144)
T 1ujo_A           34 LGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPS------MVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKDM  107 (144)
T ss_dssp             SSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSSCCC------SHHHHHHHHHHHHHHHHHHTCCSSSCCCHHHHHTCSCH
T ss_pred             HHHHHHHcchHHHHHHHHHhCcccCCCcceeecCCC------chhHHHHHHHHHHHHHHHcCcCccccCChhHHHhcCCH
Confidence            6899999999999999999999   8888 777432      37999999999999999999999999999999999995


Q ss_pred             c
Q psy5526          81 S   81 (88)
Q Consensus        81 ~   81 (88)
                      .
T Consensus       108 ~  108 (144)
T 1ujo_A          108 A  108 (144)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}

Probab=99.94  E-value=5.2e-28  Score=161.21  Aligned_cols=71  Identities=24%  Similarity=0.443  Sum_probs=66.2

Q ss_pred             hhHHHHccchHHHHHHHHhhcC---CCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526           5 EELGPALSDGVVLCHLANHVRP---RSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS   81 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P---~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~   81 (88)
                      ++|+++|||||+||+|+|.++|   ++|++|+.+.      ..|+++|||+.||+||+.+|||+.++|++.||||+||+.
T Consensus        42 ~~~~~~LkDGvvLCkL~N~l~P~~~~~i~kIn~~~------~~F~~~eNI~~FL~ac~~~Gv~~~~lF~t~DL~e~kn~~  115 (155)
T 1wym_A           42 ENFQNWLKDGTVLCELINALYPEGQAPVKKIQAST------MAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMA  115 (155)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHSCTTTCSCCCCCCCC------CHHHHHHHHHHHHHHHHHHTCCTTTCCCHHHHHTCSCHH
T ss_pred             HHHHHHHcchHHHHHHHHHhccccCCCcCcccCCC------ccccHHHHHHHHHHHHHHcCCCccccCChHHHHhcCCHH
Confidence            6899999999999999999999   9999997642      379999999999999999999999999999999999953

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.94  E-value=3.6e-28  Score=162.52  Aligned_cols=72  Identities=22%  Similarity=0.310  Sum_probs=66.2

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS   81 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~   81 (88)
                      ++|.++|||||+||+|+|+++|++|++|+.++     ...|+++|||+.||+||+++|||+.++|++.||||+||++
T Consensus        32 ~~l~~~LkdGvvLCkL~N~l~P~~i~kI~~~~-----~~~f~~~eNI~~FL~a~~~~Gv~~~~lF~~~DL~e~kn~~  103 (159)
T 1p2x_A           32 STFEQSLRNGVVLALLVQKFQPDKLIKIFYSN-----ELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLP  103 (159)
T ss_dssp             GGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCS-----SCCTTHHHHHHHHHHHHHHTTCCGGGCCCHHHHSSCSCHH
T ss_pred             HHHHHHHcchHHHHHHHHHhCCCCcccccccc-----CCcchHHHHHHHHHHHHHHcCCCcccccCHHHHHhcCCHH
Confidence            58999999999999999999999999998642     1379999999999999999999999999999999999953

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.93  E-value=3.9e-27  Score=162.85  Aligned_cols=71  Identities=23%  Similarity=0.331  Sum_probs=65.3

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQG   80 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~   80 (88)
                      ++|+++|||||+||+|+|+++|++|++|+.++    . ..|+++|||+.||+||+++|||+.++|++.||||+||+
T Consensus        76 ~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s----~-~~f~~~eNI~~FL~ac~~~Gvp~~~lF~t~DL~e~kn~  146 (203)
T 1p5s_A           76 STFEQSLRNGVVLALLVQKFQPDKLIKIFYSN----E-LQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNL  146 (203)
T ss_dssp             GGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCS----S-SCCCHHHHHHHHHHHHHHTTCCGGGCCCHHHHHSCSCH
T ss_pred             HHHHHHHcchHHHHHHHHHhCCCCcccccCCC----C-CcchHHHHHHHHHHHHHHcCCCcccccCHHHHHhcCCH
Confidence            48999999999999999999999999996432    1 36999999999999999999999999999999999995

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}

Probab=99.93  E-value=2.7e-27  Score=162.16  Aligned_cols=76  Identities=26%  Similarity=0.289  Sum_probs=66.1

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCC--CcccCCCC---CCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSV--ASIHVPSP---AVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i--~~I~~~~~---~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      ++|+++|||||+||+|+|+++|++|  ++|+.++.   +.++ ..|+++|||+.||+||+++|||+.++|++.||||+||
T Consensus        46 ~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~-~~f~~~eNI~~FL~ac~~~Gvp~~~lFet~DL~e~kn  124 (190)
T 2rr8_A           46 TELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATG-LHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKN  124 (190)
T ss_dssp             HHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTC-CCSSTHHHHHHHHHGGGGTTCCSTTCCCHHHHTCTTC
T ss_pred             hHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCC-CcchHHHHHHHHHHHHHHcCCCccccCCHHHHHhcCC
Confidence            5899999999999999999999998  57865431   1112 3699999999999999999999999999999999999


Q ss_pred             Cc
Q psy5526          80 GS   81 (88)
Q Consensus        80 ~~   81 (88)
                      ++
T Consensus       125 ~~  126 (190)
T 2rr8_A          125 MP  126 (190)
T ss_dssp             CH
T ss_pred             HH
Confidence            65

>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}

Probab=99.93  E-value=4.1e-27  Score=161.75  Aligned_cols=76  Identities=26%  Similarity=0.296  Sum_probs=66.0

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCC--cccCCCC---CCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVA--SIHVPSP---AVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~---~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      ++|+++|||||+||+|+|+++|++|+  +|+.++.   +.++ ..|+++|||+.||+||+++|||+.++|++.||||+||
T Consensus        68 ~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~-~~F~~~eNI~~FL~ac~~~Gvp~~~lFet~DL~e~kn  146 (193)
T 3i6x_A           68 TELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATG-LHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKN  146 (193)
T ss_dssp             GGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSC-CCGGGHHHHHHHHHHHHHHTCCGGGCCCHHHHHSCSC
T ss_pred             HHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcc-cchHHHHHHHHHHHHHHHcCCCcccCCCcHHHhcCCC
Confidence            38999999999999999999999995  7865431   1112 3799999999999999999999999999999999999


Q ss_pred             Cc
Q psy5526          80 GS   81 (88)
Q Consensus        80 ~~   81 (88)
                      ++
T Consensus       147 ~~  148 (193)
T 3i6x_A          147 MP  148 (193)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}

Probab=99.93  E-value=2.8e-26  Score=148.56  Aligned_cols=70  Identities=24%  Similarity=0.563  Sum_probs=62.1

Q ss_pred             hhhH-HHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCcccccCCCc
Q psy5526           4 PEEL-GPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDATQGS   81 (88)
Q Consensus         4 ~~~~-~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~kn~~   81 (88)
                      +++| .++|||||+||+|+|+++|++|++|+..+    + ..|+++|||+.||+||++ +|+   ++|++.||||+||++
T Consensus        37 ~~~~l~~~LkdGvvLCkLiN~l~Pg~i~kI~~~~----~-~~f~~~eNI~~FL~a~~~~~g~---~lF~t~DL~e~kn~~  108 (126)
T 2l3g_A           37 PEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEP----R-SESECLSNIREFLRGCGASLRL---ETFDANDLYQGQNFN  108 (126)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHHSTTCCSCCCSSC----C-SHHHHHHHHHHHHHHHHHTSCC---CCCCHHHHHTTSCHH
T ss_pred             hhhHHHHHHccHHHHHHHHHHhCCCCCCccCCCC----C-cchHHHHHHHHHHHHHHHhCCC---CccCHHHHHhCCCHH
Confidence            4566 69999999999999999999999997532    2 279999999999999999 996   899999999999964

>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.92  E-value=5.6e-26  Score=146.13  Aligned_cols=67  Identities=34%  Similarity=0.643  Sum_probs=60.9

Q ss_pred             HHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526           7 LGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS   81 (88)
Q Consensus         7 ~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~   81 (88)
                      |+++||||++||+|+|+++|++|++|+.++    + ..|+++|||+.||+||+++|+   ++|++.||||+||++
T Consensus        35 l~~~L~dGvvLCkL~N~l~Pg~i~ki~~~~----~-~~f~~~eNI~~FL~a~~~~g~---~~F~~~DL~e~kn~~  101 (121)
T 1wyr_A           35 LKSSLKNGVVLCKLINRLMPGSVEKFCLDP----Q-TEADCINNINDFLKGCATLQV---EIFDPDDLYSGVNFS  101 (121)
T ss_dssp             HHHHHHHSHHHHHHHHHHSTTCCSCCCSSC----C-SHHHHHHHHHHHHHHHHHHTC---CCCCHHHHHTCSCHH
T ss_pred             HHHHHccHHHHHHHHHHhCCCCCCcCCCCC----c-chHHHHHHHHHHHHHHHHcCC---CccCHHHHHcCCCHH
Confidence            689999999999999999999999997532    2 279999999999999999997   899999999999964

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=99.86  E-value=1.3e-22  Score=155.92  Aligned_cols=73  Identities=30%  Similarity=0.650  Sum_probs=65.3

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHH-HHhCCCCCCCCCCCcccccCCCc
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEAC-RKIGVEEGDLCDRDSIVDATQGS   81 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~kn~~   81 (88)
                      ++|.++||||++||+|+|+++|++|+  +|+..    |+.++|+++|||+.||+|| +.+|||+.++|++.||||+||++
T Consensus        34 ~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~----~~~~~f~~~~ni~~Fl~~~~~~~g~~~~~~f~~~Dl~~~~~~~  109 (587)
T 3ky9_A           34 CELAQALRDGVLLCQLLNNLLPHAINLREVNLR----PQMSQFLCLKNIRTFLSTCCEKFGLKRSELFEAFDLFDVQDFG  109 (587)
T ss_dssp             HHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSS----CTTBHHHHHHHHHHHHHHHHHTTCCCTTSSCCHHHHHTCSCHH
T ss_pred             hhHHHHhCcHHHHHHHHHHhCCCCCCccccCCC----ccccchHHHHHHHHHHHHHHHHcCCCHHHcCCchhhhccCCcc
Confidence            57999999999999999999999995  56532    3445799999999999999 88999999999999999999964

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=5.5e-15  Score=95.13  Aligned_cols=68  Identities=21%  Similarity=0.326  Sum_probs=59.9

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k   78 (88)
                      ++|++.|+||++||+|+|.+.|+.+++++.++    . ..|+.+|||+.||++++++|++...+ .++||+++.
T Consensus        41 ~dl~~dL~DGv~L~~Lle~L~~~~l~~~~~~p----~-~~~~~~eNv~~aL~~~~~~gv~~~~i-~~~DI~dgn  108 (129)
T 2yrn_A           41 RDLQQDVTDGVLLAQIIQVVANEKIEDINGCP----K-NRSQMIENIDACLNFLAAKGINIQGL-SAEEIRNGN  108 (129)
T ss_dssp             SCHHHHSSSSHHHHHHHHHHTTCCCTTCCSSC----C-STTHHHHHHHHHHHHHHHHTCCCTTC-CHHHHHHTC
T ss_pred             hhHHHHcccHHHHHHHHHHHhcCCcccccCCC----C-cHHHHHHHHHHHHHHHHHhCCcccCC-ChhhhhcCC
Confidence            68999999999999999999999998877432    1 37899999999999999999998887 799999854

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=99.52  E-value=4.4e-15  Score=112.95  Aligned_cols=72  Identities=19%  Similarity=0.324  Sum_probs=63.2

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCC--CcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSV--ASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS   81 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i--~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~   81 (88)
                      .+|++.|+||++||+|+|.+.|+++  ++|+.+    +..+.|+++|||+.||++|+.+|++...+ ++.||+|+++..
T Consensus        37 ~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~----~~~~~~~~~eNi~~~L~~~k~~g~~~~~i-~~~Dl~dg~~~l  110 (506)
T 1pxy_A           37 NQLYELVKDGVLLCKLINVAVPGTIDERAINTK----RVLNPWERNENHTLCLNSAKAVGCSVVNI-GTQDLAEGRPHL  110 (506)
T ss_dssp             SHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCC----SSCCHHHHHHHHHHHHHHHHHTTCCCTTC-CHHHHHHTCHHH
T ss_pred             hHHHHHhcchHHHHHHHHHHcCCCCCccccCcc----ccccHHHHHHHHHHHHHHHHHhCCCcCCC-CHHHHhcCChHH
Confidence            4799999999999999999999999  466654    22347999999999999999999999998 999999998743

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=99.38  E-value=5.4e-13  Score=94.77  Aligned_cols=69  Identities=25%  Similarity=0.411  Sum_probs=60.2

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .+|++.|+||++||+|+|.+.|++++  +++.+     +...|+++||++.||++++++|++...+ .+.||++++-
T Consensus        54 ~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~-----~~~~~~~~eNv~~aL~~~k~~g~~l~~I-~~~DIvdg~~  124 (275)
T 1aoa_A           54 DDLFKAVGDGIVLCKMINLSVPDTIDERAINKK-----KLTPFIIQENLNLALNSASAIGCHVVNI-GAEDLRAGKP  124 (275)
T ss_dssp             THHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCS-----SCCHHHHHHHHHHHHHHHHHTTCCCTTC-CHHHHHTTCH
T ss_pred             chHHHHhccHHHHHHHHHHhcCCCCCccccCCC-----CCCHHHHHHHHHHHHHHHHHcCCcccCC-CHHHHHcCcH
Confidence            58999999999999999999999986  56542     2347899999999999999999998875 9999999864

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.34  E-value=1.3e-12  Score=99.53  Aligned_cols=74  Identities=18%  Similarity=0.285  Sum_probs=61.5

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .+|++.|+||++||+|+|.+.|++++  +++.+....+ ...|+.+||++.||++++.+|++...-|.+.||++|+.
T Consensus        42 ~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~~~~~~-~~~~~~~eNi~~~L~~~k~~g~~~l~~i~~~DI~dg~~  117 (513)
T 1rt8_A           42 FEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKP-LDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGRE  117 (513)
T ss_dssp             THHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC---C-CCHHHHHHHHHHHHHHHHHHSSCCCSSCCHHHHHTTCH
T ss_pred             HHHHHHhhcHHHHHHHHHHHcCCCcchhhcCCccccCc-ccHHHHHHHHHHHHHHHHHcCCCccCCcCHHhhhcCCH
Confidence            58999999999999999999999985  5665421112 24799999999999999999996667799999999875

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=99.32  E-value=8e-13  Score=93.26  Aligned_cols=67  Identities=19%  Similarity=0.216  Sum_probs=58.9

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k   78 (88)
                      .+|++.|+||++||+|+|.+.|+.+++++.+     + ..|+++||++.||+++++.|++...+ .+.|+++|.
T Consensus        48 ~~l~~dl~DGv~L~~Lle~l~~~~v~k~~~~-----~-~~~~~~eNi~~aL~~~k~~gv~lv~I-~~~DIvdG~  114 (254)
T 1wku_A           48 ENIEEDFRNGLKLMLLLEVISGERLPRPDKG-----K-MRFHKIANVNKALDFIASKGVKLVSI-GAEEIVDGN  114 (254)
T ss_dssp             SCTTTTTTTSHHHHHHHHHHHCSCCCCCCSC-----C-SHHHHHHHHHHHHHHHHTTTCCCCSC-CHHHHHHCC
T ss_pred             cCHHHHccCHHHHHHHHHHhCcCCCCCCCCC-----c-cHHHHHHhHHHHHHHHHHcCCCccCC-CHHHHhccc
Confidence            4688999999999999999999999876432     1 36999999999999999999998876 999999985

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=99.24  E-value=5e-12  Score=88.64  Aligned_cols=69  Identities=23%  Similarity=0.237  Sum_probs=59.1

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCC-CcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSV-ASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i-~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .++++.|+||++||+|+|.+.|+.+ ++++.++    + ..|+.+||++.+|+++++.|++...+ .+.|+++|+-
T Consensus        41 ~dl~~dL~DGv~L~~Lle~L~~~~~~~~~n~~~----~-~~~~~~eNv~~aL~~~k~~g~~lv~I-~~~DIvdG~~  110 (245)
T 2wa7_A           41 GNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRP----T-FRQMQLENVSVALEFLDRESIKLVSI-DSKAIVDGNL  110 (245)
T ss_dssp             SCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSC----C-SHHHHHHHHHHHHHHHHHTTCCCCSC-CHHHHHTTCH
T ss_pred             cCHHHHcccHHHHHHHHHHHcCCCCchhcCCCC----C-cHHHHHHHHHHHHHHHHHcCCcccCC-CHHHhhCCCH
Confidence            4688999999999999999999998 5666432    2 36899999999999999999998776 8999999863

>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A

Probab=99.19  E-value=3.9e-11  Score=77.15  Aligned_cols=63  Identities=17%  Similarity=0.383  Sum_probs=52.6

Q ss_pred             HHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526           9 PALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         9 ~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k   78 (88)
                      |.|+||+++|+|+|.+.||+|+  ||+....     ..|.+++|+..|.++++.+|+++  .+..+.|..+|
T Consensus        26 E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~-----~e~e~~~N~k~lq~af~k~gV~k--~i~v~kLvkgk   90 (123)
T 2qjz_A           26 EQLCSGAAYCQFMDMLFPGSIALKKVKFQAK-----LEHEYIQNFKILQAGFKRMGVDK--IIPVDKLVKGK   90 (123)
T ss_dssp             GGGGGSHHHHHHHHHHSTTSSCGGGCCTTCC-----SHHHHHHHHHHHHHHHHHHTCCC--CCCHHHHTTCC
T ss_pred             HHcCchHHHHHHHHHHccCCCcHHHhccCCC-----ChHHHHHHHHHHHHHHHHcCCCC--ccCHHHHHcCC
Confidence            6799999999999999999998  8885422     37999999999999999999986  34666665554

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=99.15  E-value=2.3e-11  Score=84.99  Aligned_cols=67  Identities=22%  Similarity=0.195  Sum_probs=57.9

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .++++.|+||++||+|++.+.|+.+++.. +     + ..|+.+||++.+|+++++.|++...+ .+.||++|.-
T Consensus        38 ~dl~~dl~DG~~L~~Lle~l~~~~~~~~~-~-----~-~~~~~~eNv~~aL~~~k~~g~~l~~I-~~~DIvdg~~  104 (245)
T 1sh5_A           38 SDLYEDLRDGHNLISLLEVLSGDSLPREK-G-----R-MRFHKLQNVQIALDYLRHRQVKLVNI-RNDDIADGNP  104 (245)
T ss_dssp             SCTTTTTTTSHHHHHHHHHHHCCCCCCCC-C-----C-SHHHHHHHHHHHHHHHHHTTCCCCSC-CHHHHHTTCH
T ss_pred             cchHhhccCHHHHHHHHHHhcCccccCCC-C-----c-chHHHHHhHHHHHHHHHHcCCcccCC-ChHhhhcccH
Confidence            46899999999999999999999887532 1     1 37899999999999999999998887 8999999863

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=99.15  E-value=2.3e-11  Score=85.22  Aligned_cols=67  Identities=22%  Similarity=0.236  Sum_probs=57.8

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .++++.|+||++||+|+|.+.|+.+++.. +     + ..|+.+||++.+|+++++.|++... +.+.||++|.-
T Consensus        38 ~dl~~dl~DG~~L~~Lle~l~~~~~~~~~-~-----~-~~~~~~eNv~~aL~~~k~~g~~l~~-I~~~DIvdg~~  104 (246)
T 1dxx_A           38 ENLFSDLQDGRRLLDLLEGLTGQKLPKEK-G-----S-TRVHALNNVNKALRVLQNNNVDLVN-IGSTDIVDGNH  104 (246)
T ss_dssp             SCTTTTTTTSHHHHHHHHHHHSCCCCCCC-C-----S-SHHHHHHHHHHHHHHHHHTTCCCTT-CCHHHHHTTCH
T ss_pred             cCHHHHhCcHHHHHHHHHHHcCCcCCCCC-C-----c-cHHHHHHHHHHHHHHHHHcCCcccc-CCHHHhhcccH
Confidence            57889999999999999999998877532 1     1 3689999999999999999999877 69999999864

>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=6.6e-11  Score=78.98  Aligned_cols=63  Identities=17%  Similarity=0.357  Sum_probs=52.6

Q ss_pred             HHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526           9 PALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         9 ~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k   78 (88)
                      |.|+||+++|+|+|.|.|++|+  ||+....     ..|.+++|+..|.++++.+||++  .+..+.|..+|
T Consensus        43 E~L~~GaayCQLmd~L~PgsV~l~KVkf~a~-----~e~e~~~N~k~lQ~af~k~gV~k--~ipV~kLvkgk  107 (159)
T 1wyo_A           43 EQLCSGAAYCQFMDMLFPGCVHLRKVKFQAK-----LEHEYIHNFKVLQAAFKKMGVDK--IIPVEKLVKGK  107 (159)
T ss_dssp             GGGGGCHHHHHHHHHHSTTSSCTTSCCTTCC-----SSHHHHHHHHHHHHHHHHHTCCC--CCCHHHHTTTC
T ss_pred             hhcCccHHHHHHHHHHccCCCcHhhhccCCC-----ChHHHHHHHHHHHHHHHHcCCCC--ccCHHHHhcCC
Confidence            6799999999999999999998  8885422     36999999999999999999986  35666665554

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.08  E-value=1.6e-10  Score=88.13  Aligned_cols=74  Identities=14%  Similarity=0.255  Sum_probs=60.1

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCC--CcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSV--ASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i--~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .++++.|+||++||+|++++.||.+  ++++.++..-.+...|+.+||++.+|+++++.|++-.. +.+.|+++|+-
T Consensus       304 ~~l~~DL~DG~~L~~Lle~l~~g~v~~~~~~~~p~~~~~~~r~~~~eNv~~al~~~~~~gv~lv~-i~~~DIvdg~~  379 (513)
T 1rt8_A          304 HDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGFSLVG-IQGADITDGSR  379 (513)
T ss_dssp             SCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHHHHHHHHHTTCCCTT-CCHHHHHTTCH
T ss_pred             cCHHHHHhhHHHHHHHHHHhCCCCcchhhhcCCcccccccchHHHHHHHHHHHHHHHHcCceeec-cchhhhhcCCc
Confidence            4799999999999999999999987  46665321100124799999999999999999998877 69999999863

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=98.96  E-value=4e-10  Score=81.34  Aligned_cols=66  Identities=23%  Similarity=0.199  Sum_probs=56.3

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k   78 (88)
                      .+|++.|+||++||+|++.+.|+.+++.. +     + ..|+.+||++.+|+++++.|++-..+ .+.|+.+|.
T Consensus        94 ~dL~~DL~DGvvL~~Lle~L~~~~l~~~~-~-----~-~r~~kleNvn~aL~~lk~~gv~lv~I-~~~DIvdGn  159 (296)
T 3f7p_A           94 SDLYEDLRDGHNLISLLEVLSGDSLPREK-G-----R-MRFHKLQNVQIALDYLRHRQVKLVNI-RNDDIADGN  159 (296)
T ss_dssp             SCTTTTTTTSHHHHHHHHHHHCCCCCCCC-C-----S-SHHHHHHHHHHHHHHHHHTTCCCTTC-CHHHHHTTC
T ss_pred             ccHHHHHhhHHHHHHHHHHhcCCcccccC-C-----c-ChhhhhhhHHHHHHHHHHhCccccCC-Chhhhhccc
Confidence            56889999999999999999999987632 1     1 37999999999999999999987765 888998884

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=98.89  E-value=1.3e-09  Score=77.83  Aligned_cols=68  Identities=22%  Similarity=0.222  Sum_probs=57.4

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCC-CcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSV-ASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i-~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k   78 (88)
                      .++++.|+||++||+|++.+.|+.+ ++++.++    . ..++.+||++.+|+++++.|++-..+ .+.|+.+|.
T Consensus        68 ~dL~~DL~DGv~L~~Lle~Ls~~~l~~~~~~~p----~-~r~~kleNv~~aL~~lk~~gv~lvnI-~~~DIvdGn  136 (272)
T 3hoc_A           68 ANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRP----T-FRQMQLENVSVALEFLDRESIKLVSI-DSKAIVDGN  136 (272)
T ss_dssp             SCTTTTTTTSHHHHHHHHHHHTSCCSSCCCSSC----C-SHHHHHHHHHHHHHHHHHTTCCCSSC-CHHHHHTTC
T ss_pred             ccHHHHHhhHHHHHHHHHHHcCCccccccCCCC----c-cHHHHHHHHHHHHHHHHHcCCccccc-ccchhhcCC
Confidence            4688999999999999999999988 5665432    1 36889999999999999999987765 788998875

>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*

Probab=98.85  E-value=2.7e-09  Score=68.82  Aligned_cols=69  Identities=25%  Similarity=0.297  Sum_probs=57.4

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      +++++.|+||++||+|++.+.|+.++  +++..    |. +.++..||++.-|+++++.|++-..+ .+.|+.+|.-
T Consensus        43 ~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~----p~-~r~~kieNv~~aL~~lk~~gi~l~~I-~~~DIvdGn~  113 (131)
T 2vzc_A           43 TELETQFADGVYLVLLMGLLEGYFVPLHSFFLT----PD-SFEQKVLNVSFAFELMQDGGLEKPKP-RPEDIVNCDL  113 (131)
T ss_dssp             CCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSS----CC-SHHHHHHHHHHHHHHHHHTTCCCCSS-CHHHHHTTCH
T ss_pred             cCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCC----CC-cHHHHHHHHHHHHHHHHHcCCCcCCC-CHHHhhCCCH
Confidence            36888999999999999999999875  45432    22 47899999999999999999987665 8999999863

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=98.83  E-value=2.4e-09  Score=84.57  Aligned_cols=67  Identities=22%  Similarity=0.253  Sum_probs=57.9

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k   78 (88)
                      .++++.|+||++||+|++.+.|+.+++++.+     + ..|+.++|++.+|++++..|++-..+ .+.|+++|.
T Consensus        29 ~~l~~dl~DG~~L~~l~e~l~~~~~~~~~~~-----~-~~~~~~eN~~~~l~~~~~~g~~~~~i-~~~di~~g~   95 (863)
T 1sjj_A           29 ENIEEDFRDGLKLMLLLEVISGERLAKPERG-----K-MRVHKISNVNKALDFIASKGVKLVSI-GAEEIVDGN   95 (863)
T ss_dssp             CCCSSTTSSCHHHHHHHHHTSCCCCCCSCCC-----S-SHHHHHHHHHHHHHHHHHTTCCCTTC-CSHHHHTTC
T ss_pred             cCHHHHhcCHHHHHHHHHHhCCCceeCCCCC-----c-cHHHHHHHHHHHHHHHHHcCCccCCC-ChHHhhcCC
Confidence            4678899999999999999999999875543     2 37999999999999999999987765 889999885

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=98.65  E-value=3.8e-08  Score=74.78  Aligned_cols=70  Identities=16%  Similarity=0.244  Sum_probs=57.5

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      +++++.|+||++||+|++.+.|+.++  +++.++    ....|+.+||++.+|+++++.|++-..+ .+.|+.+|..
T Consensus       295 ~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~----~~~r~~~leNv~~aL~~~k~~~v~l~~I-~~~dIvdg~~  366 (506)
T 1pxy_A          295 NNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPP----IKMPFRKVENCNQVIKIGKQLKFSLVNV-AGNDIVQGNK  366 (506)
T ss_dssp             SCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSS----CCCHHHHHHHHHHHHHHHHHTTCCCCSC-CHHHHHTTCH
T ss_pred             ccHHHHHHhHHHHHHHHHHHcCCccccccccCCc----cccHHHHHHHHHHHHHHHHHcCCcccCC-CHHHHhcCCH
Confidence            47999999999999999999999875  344331    1237899999999999999999987665 8899998753

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=98.38  E-value=3e-07  Score=67.30  Aligned_cols=69  Identities=25%  Similarity=0.262  Sum_probs=56.1

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCc-ccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVAS-IHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~-I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .++++.|+||++||+|++.+.+..+.+ ++..    |+ ..++..||++.-|+++++.|+.-..+ .+.|+.+|.-
T Consensus        38 ~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~----p~-~r~~k~eNv~~al~~~~~~g~~lv~i-~~~DIvdGn~  107 (347)
T 4b7l_A           38 GNLQTDLSDGLRLIALLEVLSQKRMYRKYHQR----PT-FRQMQLENVSVALEFLDRESIKLVSI-DSKAIVDGNL  107 (347)
T ss_dssp             SCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSS----CC-SHHHHHHHHHHHHHHHHHTTCCCSSC-CHHHHHTTCH
T ss_pred             CCHHHHhcCHHHHHHHHHHHcCCccChhhcCC----cc-cHHHHHHHHHHHHHHHHHhccccCCC-CcchhhcCCH
Confidence            367889999999999999999988753 3322    22 36788999999999999999987664 8899998753

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A

Probab=98.36  E-value=4.2e-07  Score=58.28  Aligned_cols=67  Identities=15%  Similarity=0.293  Sum_probs=54.5

Q ss_pred             hHH-HHccchHHHHHHHHhhcCCCCCc--ccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           6 ELG-PALSDGVVLCHLANHVRPRSVAS--IHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         6 ~~~-~~LrdGv~LC~L~N~l~P~~i~~--I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      +|. ..++||+.+|.|++.++|+.|..  +..+     .++.....+|....+..++++|++.  .-.++|+.|++-
T Consensus        31 ~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~-----~L~~~d~~~Na~~ais~ArklG~~~--~l~pEDIve~~p  100 (124)
T 1wjo_A           31 SFKDKTISSSLAVVDLIDAIQPGCINYDLVKSG-----NLTEDDKHNNAKYAVSMARRIGARV--YALPEDLVEVKP  100 (124)
T ss_dssp             CTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCS-----SCCHHHHHHHHHHHHHHHHHTCCSC--CCCHHHHHHTCT
T ss_pred             CCCcchhhhhHHHHHHHHHHCcCccCHHHhcCC-----CCCHHHHHHHHHHHHHHHHHcCCCc--ccCHHHHhcCcc
Confidence            567 88999999999999999999863  2222     2235677899999999999999986  459999999844

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.77  E-value=2e-05  Score=49.76  Aligned_cols=63  Identities=16%  Similarity=0.357  Sum_probs=48.6

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCccccc
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDA   77 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~   77 (88)
                      .+|-.+.+||..+|.|++.++|+.++.-.....        ...+|.+.-++.++++|+|.  +.+++|+.+.
T Consensus        31 ~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~~--------~~~~n~~~af~~a~~LGi~~--ll~peDi~~~   93 (119)
T 2d89_A           31 TNFTTSWRNGLSFCAILHHFRPDLIDYKSLNPQ--------DIKENNKKAYDGFASIGISR--LLEPSDMVLL   93 (119)
T ss_dssp             CCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCTT--------CSHHHHHHHHHHHHHHTCCC--CSCHHHHHHS
T ss_pred             CCccccccccHHHHHHHHHHCcCcCChhhhccc--------CHHHHHHHHHHHHHHhCCCc--ccCHHHHhcc
Confidence            357788999999999999999998853221111        12489988888889999986  6799999865

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A

Probab=97.71  E-value=4.1e-05  Score=48.98  Aligned_cols=64  Identities=17%  Similarity=0.345  Sum_probs=48.8

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCcccccC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~k   78 (88)
                      .+|-.+.+||..+|.|++.++|+.++.-...        .-...+|++.-++.+++ +|+|.  +.+++|+.+..
T Consensus        29 ~nFs~sw~DG~af~aLih~~~P~lid~~~l~--------~~~~~~n~~~af~~Ae~~lgip~--lL~peD~v~~~   93 (128)
T 2d87_A           29 QNFSSSWSDGMAFCALVHNFFPEAFDYGQLS--------PQNRRQNFEVAFSSAETHADCPQ--LLDTEDMVRLR   93 (128)
T ss_dssp             SCTTTTTTSSHHHHHHHHHHCTTTSCSTTSC--------SSCHHHHHHHHHHHHHHHHCCCC--CSCHHHHHHSS
T ss_pred             CCccccccccHHHHHHHHHHCcCcCCHHHcC--------ccCHHHHHHHHHHHHHHcCCCCc--ccCHHHHhccC
Confidence            3577889999999999999999987522111        11246899999999965 99985  56999987654

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A

Probab=97.64  E-value=5.9e-05  Score=47.70  Aligned_cols=63  Identities=13%  Similarity=0.322  Sum_probs=48.1

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHH-HhCCCCCCCCCCCccccc
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACR-KIGVEEGDLCDRDSIVDA   77 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~-~~Gv~~~~lF~~~DL~e~   77 (88)
                      .+|-.+.+||..+|.|++.++|+.++.-....        -...+|...-++.++ ++|+|.  +.+++|+.++
T Consensus        31 ~nFs~sw~DG~af~aLih~~~P~lid~~~l~~--------~~~~~n~~~af~~Ae~~lgi~~--lL~peD~~~~   94 (121)
T 2d88_A           31 TDLTMSWKSGLALCAIIHRYRPDLIDFDSLDE--------QNVEKNNQLAFDIAEKELGISP--IMTGKEMASV   94 (121)
T ss_dssp             CCSSHHHHTSHHHHHHHHHHCTTTSCTTTSCT--------TCHHHHHHHHHHHHHHHTCCCC--SSCHHHHHHS
T ss_pred             CCchhhccccHHHHHHHHHhCcCcCCHHHcCc--------cCHHHHHHHHHHHHHHHcCCCC--cCCHHHHhcc
Confidence            35778899999999999999999875221111        124689999999886 699985  6699999753

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}

Probab=97.64  E-value=5.8e-05  Score=48.15  Aligned_cols=62  Identities=15%  Similarity=0.286  Sum_probs=46.7

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHH-HhCCCCCCCCCCCcccc
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACR-KIGVEEGDLCDRDSIVD   76 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~-~~Gv~~~~lF~~~DL~e   76 (88)
                      .+|-.+.+||..+|.|++.++|+.++.-.....        ...+|++.-++.++ .+|+|.  +.+++|+..
T Consensus        29 ~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~~--------~~~~n~~~af~~Ae~~Lgi~~--ll~~eDv~~   91 (127)
T 1wyq_A           29 HNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKC--------NAHYNLQNAFNLAEKELGLTK--LLDPEDVNV   91 (127)
T ss_dssp             SCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCSS--------CCHHHHHHHHHHHHHTTCCCC--CSCTTTSCS
T ss_pred             CCCcccccccHHHHHHHHHHCcCcCCHHHhCcC--------CHHHHHHHHHHHHHHHcCCCc--ccCHHHhcc
Confidence            457778999999999999999998852211111        12489999889886 799985  568999854

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A

Probab=97.61  E-value=5.2e-05  Score=47.13  Aligned_cols=62  Identities=18%  Similarity=0.322  Sum_probs=47.2

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHH-HhCCCCCCCCCCCcccc
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACR-KIGVEEGDLCDRDSIVD   76 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~-~~Gv~~~~lF~~~DL~e   76 (88)
                      .+|-.+.+||..+|.|++.++|+.++.-....        -...+|++.-++.++ ++|+|.  +.+++|+..
T Consensus        25 ~nFs~sw~dG~af~aLih~~~P~lid~~~l~~--------~~~~~n~~~af~~Ae~~lgi~~--ll~~eDv~~   87 (109)
T 1bkr_A           25 HNFTTSWRDGMAFNALIHKHRPDLIDFDKLKK--------SNAHYNLQNAFNLAEQHLGLTK--LLDPEDISV   87 (109)
T ss_dssp             SSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCT--------TCHHHHHHHHHHHHHHHHCCCC--CCCHHHHSS
T ss_pred             CCCcccccccHHHHHHHHHHCcCCCCHHHcCc--------CCHHHHHHHHHHHHHHHcCCCc--cCCHHHccC
Confidence            46778899999999999999999885322111        124589999888885 799985  568899754

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A

Probab=97.59  E-value=5.3e-05  Score=47.58  Aligned_cols=65  Identities=15%  Similarity=0.354  Sum_probs=49.7

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .+|-.+.+||..+|.|++.++|+.++.-...        .-...+|.+.-++.+++ +|+|.  +.+++|+.+..|
T Consensus        29 ~nFs~sw~dG~af~aLih~~~P~lid~~~l~--------~~~~~~n~~~af~~Ae~~lgi~~--lL~peD~~~~~d   94 (116)
T 1wyl_A           29 SDLSSSWADGLALCALVYRLQPGLLEPSELQ--------GLGALEATAWALKVAENELGITP--VVSAQAVVAGSD   94 (116)
T ss_dssp             SCTTTTTTSSHHHHHHHHHHCTTSCCCSSGG--------GCCHHHHHHHHHHHHHHTTCCCC--CSCHHHHHHTSC
T ss_pred             CCccccccccHHHHHHHHHHCcCCCCHHHhc--------cCCHHHHHHHHHHHHHHHcCCcc--ccCHHHHhcCCc
Confidence            3677889999999999999999988521110        11246899999999976 99986  669999987644

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=97.54  E-value=8.7e-05  Score=51.97  Aligned_cols=65  Identities=20%  Similarity=0.422  Sum_probs=50.2

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .+|-.+.+||..+|.|++.++|+.++.-....        -...+|...-++.+++ +|+|.  +.+++|+.+++.
T Consensus       162 ~nFs~s~~DG~a~~aLi~~~~P~~id~~~l~~--------~~~~~n~~~a~~~A~~~lGi~~--~l~peDiv~~~~  227 (254)
T 1wku_A          162 QNFHTSWKDGLALCALIHRHRPDLIDYAKLRK--------DDPIGNLNTAFEVAEKYLDIPK--MLDAEDIVNTPK  227 (254)
T ss_dssp             CSSSGGGTTSHHHHHHHHHHCTTSCCGGGCCT--------TCHHHHHHHHHHHHHHHSCCCC--CSCHHHHHHSSS
T ss_pred             CCCccchhhHHHHHHHHHHHCCCcccccccCc--------CCHHHHHHHHHHHHHHHcCCCC--cCCHHHHhccCC
Confidence            35777899999999999999999985321111        1246899999999965 99995  679999987653

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=97.39  E-value=0.00013  Score=50.78  Aligned_cols=63  Identities=14%  Similarity=0.227  Sum_probs=48.5

Q ss_pred             hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCccccc
Q psy5526           6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDA   77 (88)
Q Consensus         6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~   77 (88)
                      +|-.+.+||..+|.|++.++|+.++....-.       .-...+|...-++.+++ +|+|.  +.+++|+.++
T Consensus       163 nFs~s~~dG~a~~aLi~~~~P~~i~~~~~l~-------~~~~~~n~~~a~~~A~~~lGi~~--~l~peDi~~~  226 (245)
T 2wa7_A          163 NFNQNWQDGKALGALVDSCAPGLCPDWESWD-------PQKPVDNAREAVQQADDWLGVPQ--VITPEEIIHP  226 (245)
T ss_dssp             CSSGGGTTSHHHHHHHHHHSTTSSTTGGGSC-------TTCHHHHHHHHHHHHHHHSCCCC--SSCHHHHTCT
T ss_pred             CCcccchhhHHHHHHHHHHCccccccccccC-------cccHHHHHHHHHHHHHHhCCCCc--cCCHHHhccC
Confidence            5667899999999999999999874322111       11246899999999976 99995  5699999874

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=97.30  E-value=0.0001  Score=52.01  Aligned_cols=66  Identities=15%  Similarity=0.355  Sum_probs=49.9

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCC------cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCccccc
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVA------SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDA   77 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~------~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~   77 (88)
                      .+|-..++||.++|.|++.++|+.++      .+.....     +.-...+|....++.++++|+|.  +-+++|+.++
T Consensus       190 ~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~-----~~~~~~~n~~~a~~~A~~lGi~~--~l~peDi~~~  261 (275)
T 1aoa_A          190 NNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGF-----NETDDLKRAESMLQQADKLGCRQ--FVTPADVVSG  261 (275)
T ss_dssp             SCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTT-----TCSSHHHHHHHHHHHHTTTTCCC--SCCHHHHHTT
T ss_pred             hhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCC-----CccCHHHHHHHHHHHHHHcCCCC--cCCHHHcCCC
Confidence            35667899999999999999999664      2222211     11235689999999999999986  5699999875

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1

Probab=97.29  E-value=9.1e-05  Score=46.65  Aligned_cols=62  Identities=13%  Similarity=0.244  Sum_probs=46.7

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHH-HhCCCCCCCCCCCcccc
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACR-KIGVEEGDLCDRDSIVD   76 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~-~~Gv~~~~lF~~~DL~e   76 (88)
                      .+|-.+.+||..+|.|++.++|+.++.-..        ..-...+|++.-++.++ ++|+|.  +.+++|+..
T Consensus        30 ~nFs~sw~DG~af~aLih~~~P~lid~~~l--------~~~~~~~n~~~af~~Ae~~lgi~~--ll~~eDv~~   92 (118)
T 1bhd_A           30 LNFTTSWTDGLAFNAVLHRHKPDLFSWDKV--------VKMSPIERLEHAFSKAQTYLGIEK--LLDPEDVAV   92 (118)
T ss_dssp             CSSSGGGTTSHHHHHHHHHHCGGGSCHHHH--------HHSCHHHHHHHHHHHHHHHHCCCC--CSCHHHHHT
T ss_pred             CCCcccccCcHHHHHHHHHHCcCcCCHHHh--------CcCCHHHHHHHHHHHHHHHcCCCc--ccCHHHhhc
Confidence            367788999999999999999998752111        01123589988888885 899985  568999854

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=97.22  E-value=0.00026  Score=50.29  Aligned_cols=63  Identities=14%  Similarity=0.244  Sum_probs=48.8

Q ss_pred             hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCccccc
Q psy5526           6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDA   77 (88)
Q Consensus         6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~   77 (88)
                      +|-.+.+||..+|.|++.++|+.++....-.       .-...+|...-++.+++ +|+|.  +-+++|+.+.
T Consensus       190 nFs~sw~DG~af~aLi~~~~P~li~d~~~l~-------~~~~~~n~~~Af~~Ae~~lGi~~--ll~peDiv~~  253 (272)
T 3hoc_A          190 NFSRDWQSGRALGALVDSCAPGLCPDWDSWD-------ASKPVTNAREAMQQADDWLGIPQ--VITPEEIVDP  253 (272)
T ss_dssp             CSSGGGTTSHHHHHHHHHHSTTSSTTGGGSC-------TTCHHHHHHHHHHHHHHHHCCCC--SSCHHHHTCT
T ss_pred             ChhhcccchHHHHHHHHHhCcccccchhhcC-------ccCHHHHHHHHHHHHHHhCCCCc--cCCHHHhccC
Confidence            5677899999999999999999884322111       11246999999999976 99995  6799999874

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=97.14  E-value=0.00022  Score=49.42  Aligned_cols=60  Identities=15%  Similarity=0.290  Sum_probs=47.7

Q ss_pred             hHHHHccchHHHHHHHHhhcCCCCCc--ccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCccccc
Q psy5526           6 ELGPALSDGVVLCHLANHVRPRSVAS--IHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDA   77 (88)
Q Consensus         6 ~~~~~LrdGv~LC~L~N~l~P~~i~~--I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~   77 (88)
                      +|-.+.+||.++|.|++.++|+.++.  +..          -...+|....++.+++ +|+|.  +.+++|+.+.
T Consensus       156 nF~~s~~DG~a~~aLi~~~~P~~i~~~~l~~----------~~~~~n~~~a~~~a~~~lGi~~--~l~peDi~~~  218 (245)
T 1sh5_A          156 NFTTSWRDGRLFNAIIHRHKPMLIDMNKVYR----------QTNLENLDQAFSVAERDLGVTR--LLDPEDVDVP  218 (245)
T ss_dssp             CSSGGGTTSHHHHHHHHTTCTTTCCHHHHHH----------SCHHHHHHHHHHHHHHHHCCCC--CCCHHHHSSS
T ss_pred             CccccccchHHHHHHHHHHCCCCCCHHHccc----------CCHHHHHHHHHHHHHHhCCCCc--cCCHHHhccC
Confidence            46678999999999999999998862  221          1246899999999975 99985  5689998754

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=97.11  E-value=0.00036  Score=50.95  Aligned_cols=64  Identities=14%  Similarity=0.228  Sum_probs=48.1

Q ss_pred             hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCcccccC
Q psy5526           6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~k   78 (88)
                      +|-.+.+||.++|.|++.++|+.+.....-.       .-...+|...-++.+++ +|+|.  +.+++|+...+
T Consensus       160 nF~~sw~DG~af~aLi~~~~P~~~~d~~~l~-------~~~~~~n~~~Af~~Ae~~lGip~--ll~peDi~~~~  224 (347)
T 4b7l_A          160 NFNQNWQDGKALGALVDSCAPGLCPDWESWD-------PQKPVDNAREAMQQADDWLGVPQ--VITPEEIIHPD  224 (347)
T ss_dssp             CSSGGGTTSHHHHHHHHHHSTTSSTTGGGSC-------TTCHHHHHHHHHHHHHHHHCCCC--SSCHHHHTCTT
T ss_pred             CCCCCccchHHHHHHHHHhCCccccchhhcC-------cCCHHHHHHHHHHHHHHhcCCCc--ccCHHHcCCCC
Confidence            5667899999999999999999885332111       11246899988888865 99996  67899997643

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=97.02  E-value=0.00031  Score=48.80  Aligned_cols=62  Identities=19%  Similarity=0.365  Sum_probs=47.8

Q ss_pred             hHHHHccchHHHHHHHHhhcCCCCCc--ccCCCCCCcchhhhHHHHHHHHHHHHHH-HhCCCCCCCCCCCcccccC
Q psy5526           6 ELGPALSDGVVLCHLANHVRPRSVAS--IHVPSPAVPKLTMARCRRNVDNFLEACR-KIGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         6 ~~~~~LrdGv~LC~L~N~l~P~~i~~--I~~~~~~~~~~~~f~~~eNI~~FL~~c~-~~Gv~~~~lF~~~DL~e~k   78 (88)
                      +|-.+++||.++|.|++.++|+.++.  +....         ...+|....++.++ ++|+|.  +.+++|+.+++
T Consensus       158 nFs~s~~DG~a~~aLi~~~~P~li~~~~~~~~~---------~~~~n~~~a~~~A~~~lGi~~--~l~peDi~~~~  222 (246)
T 1dxx_A          158 NFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQ---------SATQRLEHAFNIARYQLGIEK--LLDPEDVDTTY  222 (246)
T ss_dssp             SSSGGGTTSHHHHHHHHHHCGGGSCHHHHHTCC---------CHHHHHHHHHHHHHHTTCCCC--CCCHHHHSSSS
T ss_pred             CCcccchhHHHHHHHHHHHCcCccchhhhcccC---------CHHHHHHHHHHHHHHhCCCCc--cCCHHHhhcCC
Confidence            56678999999999999999998752  21111         13589999999886 799994  67999987654

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=96.62  E-value=0.00083  Score=48.26  Aligned_cols=62  Identities=18%  Similarity=0.286  Sum_probs=47.3

Q ss_pred             hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHH-HHhCCCCCCCCCCCccccc
Q psy5526           6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEAC-RKIGVEEGDLCDRDSIVDA   77 (88)
Q Consensus         6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~   77 (88)
                      +|-.+.+||.++|.|++.++|+.++.-....        -...+|...-++.+ +++|+|.  +.+++|+...
T Consensus       212 nFs~sw~DG~af~aLI~~~~P~lid~~~l~~--------~~~~~N~~~Af~~Ae~~LGi~~--ll~pEDi~~~  274 (296)
T 3f7p_A          212 NFTSSWRDGRLFNAIIHRHKPLLIDMNKVYR--------QTNLENLDQAFSVAERDLGVTR--LLDPEDVDVP  274 (296)
T ss_dssp             CSSGGGTTSHHHHHHHHHHCGGGCCHHHHTT--------SCHHHHHHHHHHHHHHHHCCCC--CCCHHHHSSS
T ss_pred             CccccccccHHHHHHHHHHCcCccCHHHcCc--------ccHHHHHHHHHHHHHHhCCCCc--cCCHHHhcCC
Confidence            5668899999999999999999886311111        02358999999999 6899985  5688998654

>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A

Probab=96.54  E-value=0.0074  Score=42.98  Aligned_cols=53  Identities=17%  Similarity=0.357  Sum_probs=37.6

Q ss_pred             HHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC
Q psy5526           8 GPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEE   65 (88)
Q Consensus         8 ~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~   65 (88)
                      .+.|.+|.+.|+++..+.|+.|+  +|+....     ..+.+..|...+-++-..+|++.
T Consensus        35 iEel~tGaayCQlmd~l~P~~i~l~kVkf~a~-----~e~e~i~N~k~LQ~~F~k~~I~k   89 (268)
T 2r8u_A           35 IEQLCSGAAYCQFMDMLFPGSIALKKVKFQAK-----LEHEYIQNFKILQAGFKRMGVDK   89 (268)
T ss_dssp             GGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCC-----SHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHcccchHHHHHHHHHccCCCchhhccCCCC-----CHHHHHHHHHHHHHHHHHcCCCC
Confidence            36789999999999999999987  6665421     24555666655555556677654

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=96.48  E-value=0.0012  Score=52.17  Aligned_cols=63  Identities=17%  Similarity=0.391  Sum_probs=48.6

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCc--ccCCCCCCcchhhhHHHHHHHHHHHHHHH-hCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVAS--IHVPSPAVPKLTMARCRRNVDNFLEACRK-IGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~--I~~~~~~~~~~~~f~~~eNI~~FL~~c~~-~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .+|-.+++||.++|.|++.+.|+.++.  +...          ...+|....+..++. +|+|.  +..+.|+.+...
T Consensus       143 ~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~~~----------~~~~n~~~a~~~a~~~lg~~~--~l~~ed~~~~~~  208 (863)
T 1sjj_A          143 QNFHISWKDGLGFCALIHRHRPELIDYGKLRKD----------DPLTNLNTAFDVAEKYLDIPK--MLDAEDIVGTAR  208 (863)
T ss_dssp             CSSSGGGTTSHHHHHHHHTTCCSSSCSGGGGSC----------CCGGGCTHHHHHHHHHHCCCC--SCCHHHHTTCSS
T ss_pred             CCCccccccHHHHHHHHHHhCCCCcChhhCCCC----------CHHHHHHHHHHHHHHhCCCCC--ccCHHHHhCCCC
Confidence            357789999999999999999999863  2221          124799999998865 99985  669999987543

>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}

Probab=95.53  E-value=0.046  Score=35.66  Aligned_cols=62  Identities=8%  Similarity=0.156  Sum_probs=43.7

Q ss_pred             HHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCccccc
Q psy5526           8 GPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDA   77 (88)
Q Consensus         8 ~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~   77 (88)
                      .|.|.+|++.|+++..+. +.|+  +|+....     ..+.+..|....-++-+.+|++..  +..+.|..+
T Consensus        26 IE~l~sGAaYCQlmD~lf-g~i~l~kVkf~a~-----~e~e~i~NfKlLQ~~F~k~~I~k~--ipV~kLvKg   89 (145)
T 4abo_I           26 IEDCGKGYAMIQIFDSIY-QDIPLKKVNFECN-----NEYQYINNWKVLQQVFLKKGIDKV--VDPERLSRC   89 (145)
T ss_dssp             GGGGGGSHHHHHHHHHHH-CCSCTTTSCSSCC-----SHHHHHHHHHHHHHHHHHHTCCCC--CCHHHHTTT
T ss_pred             HHHccccHHHHHHHHHHh-cCcchhhcccCCC-----CHHHHHHHHHHHHHHHHHcCCCCc--cCHHHHhcc
Confidence            378999999999999999 6665  5664321     257778888887777788888653  344444443

>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}

Probab=94.43  E-value=0.15  Score=32.40  Aligned_cols=62  Identities=10%  Similarity=0.221  Sum_probs=43.0

Q ss_pred             HHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCccccc
Q psy5526           8 GPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDA   77 (88)
Q Consensus         8 ~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~   77 (88)
                      .|.|.+|++.|+++..+.|+ |+  +++....     ..+.+..|....-++-...|++..  +..+-|..+
T Consensus        30 iEel~tGaayCQl~d~l~g~-v~l~kVkf~a~-----~e~e~~~N~k~LQ~~f~k~~I~k~--ipV~kLvKg   93 (127)
T 2qjx_A           30 IEECGTGAAYCQIMDSIYGD-LPMNRVKFNAT-----AEYEFQTNYKILQSCFSRHGIEKT--VYVDKLIRC   93 (127)
T ss_dssp             GGGGGGSHHHHHHHHHHHCC-SCGGGSCTTCC-----SHHHHHHHHHHHHHHHHHTTCCCC--CCHHHHTTT
T ss_pred             HHHccchHHHHHHHhhhccc-cCccccCCCCC-----CHHHHHHHHHHHHHHHHHcCCCCc--cCHHHHhcc
Confidence            46789999999999999954 54  4554321     257778888888888888888642  344444443

>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.89  E-value=0.99  Score=28.51  Aligned_cols=55  Identities=15%  Similarity=0.245  Sum_probs=41.1

Q ss_pred             hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHH-HHHHHhCCC
Q psy5526           6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFL-EACRKIGVE   64 (88)
Q Consensus         6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL-~~c~~~Gv~   64 (88)
                      ++...+.||+++++++....|..|.--+.+..    .+.-.-++|=..|- +..+.+|++
T Consensus        35 n~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~----~S~~~K~~NW~~ln~kvl~kl~~~   90 (127)
T 2ee7_A           35 NLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPA----NSLQQKLSNWGHLNRKVLKRLNFS   90 (127)
T ss_dssp             CHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCC----SSHHHHHHHHHHHHHHTTGGGTCC
T ss_pred             chhhhccchhHHHHHHHHHCcCcccccccCCC----CcHHHHHHhHHHHHHHHHHHcCCC
Confidence            47788999999999999999998874443321    12445678888885 667888874

>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1

Probab=84.09  E-value=2.5  Score=27.53  Aligned_cols=50  Identities=12%  Similarity=0.094  Sum_probs=33.1

Q ss_pred             HHHHccchHHHHHHHHhhcCCCCC-----cccCCCCCCcchhhhHHHHHHHHHHHHHHH
Q psy5526           7 LGPALSDGVVLCHLANHVRPRSVA-----SIHVPSPAVPKLTMARCRRNVDNFLEACRK   60 (88)
Q Consensus         7 ~~~~LrdGv~LC~L~N~l~P~~i~-----~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~   60 (88)
                      =.+.|.||++|.++++.|.|..-.     +|+...    ...--..+.|+...++....
T Consensus        29 ~~~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~----~~nw~lr~~NLk~l~~~i~~   83 (164)
T 1wix_A           29 DVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDV----GDNWRIKASNLKKVLHGITS   83 (164)
T ss_dssp             SHHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGG----GGCSHHHHHHHHHHHHHHHH
T ss_pred             cHHHhccHHHHHHHHHHhCccccCchHhhhhcccC----cccHHHHHHHHHHHHHHHHH
Confidence            357899999999999999998643     333211    11122355777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	88
d1h67a_	108	a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [T	1e-16
d1ujoa_	144	a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [Ta	2e-15
d1p2xa_	159	a.40.1.1 (A:) Ras GTPase-activating-like protein r	4e-13
d1dxxa1	111	a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens	0.002
d1aoaa2	116	a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros	0.002
d1sh5a1	120	a.40.1.1 (A:8-127) Actin binding domain of plectin	0.003
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	0.004

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.1 bits (161), Expect = 1e-16
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 2  SLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKI 61
           + +     L DGV+LC L N ++P SV  ++ P              N+ NFL A +  
Sbjct: 19 RIGDNFMDGLKDGVILCELINKLQPGSVQKVNDPV------QNWHKLENIGNFLRAIKHY 72

Query: 62 GVEEGDLCDRDSIVDATQ 79
          GV+  D+ + + + + T 
Sbjct: 73 GVKPHDIFEANDLFENTN 90

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Length = 144

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.6 bits (157), Expect = 2e-15
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 5   EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVE 64
                 L +GV+L  L N + P     + VP    P   + +    V  FL+A    GV 
Sbjct: 34  LGFQVWLKNGVILSKLVNSLYPEGSKPVKVPEN--PPSMVFKQMEQVAQFLKAAEDYGVI 91

Query: 65  EGDLCDRDSIVDATQ 79
           + D+     + +   
Sbjct: 92  KTDMFQTVDLYEGKD 106

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 58.5 bits (141), Expect = 4e-13
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 4   PEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
                 +L +GVVL  L    +P  +  I   +         R   N++ FL+    IG+
Sbjct: 31  TSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNE-----LQFRHSDNINKFLDFIHGIGL 85

Query: 64  EEGDLCDRDSIVDAT 78
            E    +   I +  
Sbjct: 86  PEIFHFELTDIYEGK 100

>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (73), Expect = 0.002
 Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 8/66 (12%)

Query: 11 LSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCD 70
          L DG  L  L   +  + +       P     T      NV+  L   +   V+  +   
Sbjct: 36 LQDGRRLLDLLEGLTGQKL-------PKEKGSTRVHALNNVNKALRVLQNNNVDLVN-IG 87

Query: 71 RDSIVD 76
             IVD
Sbjct: 88 STDIVD 93

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (73), Expect = 0.002
 Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 11  LSDGVVLCHLANHVRPRSVA-SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLC 69
           + D     HL N + P+            +         +  ++ L+   K+G  +    
Sbjct: 37  IKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCRQ--FV 94

Query: 70  DRDSIVD 76
               +V 
Sbjct: 95  TPADVVS 101

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.9 bits (72), Expect = 0.003
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 8/66 (12%)

Query: 11 LSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCD 70
          L DG  L  L   +   S+                   +NV   L+  R   V+  ++ +
Sbjct: 37 LRDGHNLISLLEVLSGDSLPREKGRMR-------FHKLQNVQIALDYLRHRQVKLVNIRN 89

Query: 71 RDSIVD 76
           D I D
Sbjct: 90 DD-IAD 94

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 32.3 bits (73), Expect = 0.004
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 5  EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGV 63
           +L   + DGV+LC L N   P ++    + +     L       N    L + + +G 
Sbjct: 31 NQLYELVKDGVLLCKLINVAVPGTIDERAINTK--RVLNPWERNENHTLCLNSAKAVGC 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d1h67a_	108	Calponin {Chicken (Gallus gallus) [TaxId: 9031]}	99.96
d1ujoa_	144	Transgelin {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d1p2xa_	159	Ras GTPase-activating-like protein rng2 {Fission y	99.89
d1aoaa1	131	Fimbrin (Plastin), actin-crosslinking domain {Huma	99.18
d1wjoa_	124	Fimbrin (Plastin), actin-crosslinking domain {Huma	98.79
d1sh5a1	120	Actin binding domain of plectin {Human (Homo sapie	98.79
d1aoaa2	116	Fimbrin (Plastin), actin-crosslinking domain {Huma	98.73
d1dxxa1	111	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	98.64
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	98.37
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	98.21
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	98.17
d2qjza1	120	Microtubule-associated protein eb1, N-terminal mic	97.97
d1dxxa2	127	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	97.71
d1sh5a2	110	Actin binding domain of plectin {Human (Homo sapie	97.67
d1bkra_	108	beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}	97.66
d1bhda_	108	Utrophin {Human (Homo sapiens) [TaxId: 9606]}	97.57
d1wixa_	164	Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId	84.21
d1hx8a1	133	AP180 (Lap) {Fruit fly (Drosophila melanogaster) [	84.18
d1hf8a1	132	Clathrin assembly lymphoid myeloid leukaemia prote	83.77

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=1.4e-30  Score=163.49  Aligned_cols=74  Identities=28%  Similarity=0.530  Sum_probs=69.1

Q ss_pred             CchhhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526           2 SLPEELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS   81 (88)
Q Consensus         2 ~~~~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~   81 (88)
                      +++++|.++||||++||+|+|.++||+|++|+.+.      ..|+++|||+.||+||+.+|||+.++|++.||||++|++
T Consensus        19 ~~~~~~~~~L~dGv~LC~L~N~l~pg~i~ki~~~~------~~f~~~eNI~~FL~~~~~~Gv~~~~lF~~~DL~e~kn~~   92 (108)
T d1h67a_          19 RIGDNFMDGLKDGVILCELINKLQPGSVQKVNDPV------QNWHKLENIGNFLRAIKHYGVKPHDIFEANDLFENTNHT   92 (108)
T ss_dssp             CCCSCHHHHHHHCSHHHHHHHHHSTTSSTTCCCTT------SSHHHHHHHHHHHHHHHHHTSCGGGSCCHHHHHHTCCSH
T ss_pred             CCchHHHHHHcCchhHHHHHHHHHhcCCCccCCCc------chhHHHHHHHHHHHHHHHhCCCcccCCChHHHHhCCCHH
Confidence            57899999999999999999999999999998653      269999999999999999999999999999999999965

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.6e-28  Score=160.70  Aligned_cols=74  Identities=23%  Similarity=0.372  Sum_probs=66.2

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQG   80 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~   80 (88)
                      ++|+++||||++||+|+|+++|++|++|+....  ++...|+++|||+.||+||+++||++.++|++.||||+||+
T Consensus        34 ~~f~~~L~dGvvLCkL~N~l~P~~i~~~~~~~~--~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~  107 (144)
T d1ujoa_          34 LGFQVWLKNGVILSKLVNSLYPEGSKPVKVPEN--PPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKDM  107 (144)
T ss_dssp             SSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSS--CCCSHHHHHHHHHHHHHHHHHHTCCSSSCCCHHHHHTCSCH
T ss_pred             HHHHHHHhcChhHHHHHHHHcCCCCCCccccCC--CcchhHHHHHHHHHHHHHHHHhCCCcccccchhHHhhcCCH
Confidence            479999999999999999999999998765421  23358999999999999999999999999999999999994

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.89  E-value=3.4e-24  Score=141.19  Aligned_cols=72  Identities=22%  Similarity=0.329  Sum_probs=65.7

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCCCc
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQGS   81 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~   81 (88)
                      ++|++.|+|||+||+|+|.+.|+.+++++.++    + ..|+++|||+.||++|+++|+++.++|++.||||++|++
T Consensus        32 ~dl~~~L~dGv~Lc~L~n~l~p~~i~~~~~~~----~-~~~~~~eNi~~fL~~~~~~gv~~~~~f~~~DL~e~~n~~  103 (159)
T d1p2xa_          32 STFEQSLRNGVVLALLVQKFQPDKLIKIFYSN----E-LQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLP  103 (159)
T ss_dssp             GGHHHHTTTSHHHHHHHHHHCTTSCCCCCCCS----S-CCTTHHHHHHHHHHHHHHTTCCGGGCCCHHHHSSCSCHH
T ss_pred             hHHHHHHhhHHHHHHHHHHHCCCCCceecCCC----c-chHHHHHHHHHHHHHHHHcCCCccccCchHHHHcCCCHH
Confidence            58999999999999999999999999887542    2 269999999999999999999999999999999999954

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.4e-11  Score=76.74  Aligned_cols=69  Identities=25%  Similarity=0.406  Sum_probs=58.4

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCc--ccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVAS--IHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~--I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      ++|.+.|+||++||+|++.+.|+.+.+  ++.+     +...|...+|+..+|++|++.|+....+ .+.|+++|.-
T Consensus        34 ~dL~~Dl~DGv~L~~Lle~l~~~~i~~~~~~~~-----p~~~~~~~~N~~~~L~~~k~~gi~l~~i-~~~DIvdG~~  104 (131)
T d1aoaa1          34 DDLFKAVGDGIVLCKMINLSVPDTIDERAINKK-----KLTPFIIQENLNLALNSASAIGCHVVNI-GAEDLRAGKP  104 (131)
T ss_dssp             THHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCS-----SCCHHHHHHHHHHHHHHHHHTTCCCTTC-CHHHHHTTCH
T ss_pred             hHHHHHHhhHHHHHHHHHHHcCCCCcchhccCC-----CcCHHHHHHHHHHHHHHHHHhccccCCC-ChhhhhcCCH
Confidence            579999999999999999999999874  3322     1247899999999999999999987776 9999999853

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.6e-09  Score=66.55  Aligned_cols=67  Identities=15%  Similarity=0.270  Sum_probs=54.2

Q ss_pred             hHH-HHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           6 ELG-PALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         6 ~~~-~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      +|. ..|+||++||+|++.+.|+.++  .++..+     ...+...+|+...+++++++|++. .+ .++|++++.-
T Consensus        31 ~f~d~dl~DG~~L~~Ll~~l~p~~i~~~~~~~~~-----~~~~~~~~N~~~al~~~~~lgi~~-~i-~~eDI~~gn~  100 (124)
T d1wjoa_          31 SFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGN-----LTEDDKHNNAKYAVSMARRIGARV-YA-LPEDLVEVKP  100 (124)
T ss_dssp             CTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSS-----CCHHHHHHHHHHHHHHHHHTCCSC-CC-CHHHHHHTCT
T ss_pred             cCCccccccHHHHHHHHHHHHhccCCHHhcccCC-----ccHhhHHHHHHHHHHHHHHhCCcc-cC-CHHHccCCCc
Confidence            455 4899999999999999999986  344321     236788999999999999999974 44 8999999865

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.3e-09  Score=66.22  Aligned_cols=67  Identities=22%  Similarity=0.160  Sum_probs=55.5

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .+|.+.|+||++||+|++.+.|+.+++- .     | .+.+...+|+...|+++++.|++-..+ .+.|+.+|.-
T Consensus        31 ~dl~~dl~DG~~L~~Lle~l~~~~~~~~-~-----~-~~~~~k~eN~~~aL~~~~~~~~~l~~i-~~~dI~~Gn~   97 (120)
T d1sh5a1          31 SDLYEDLRDGHNLISLLEVLSGDSLPRE-K-----G-RMRFHKLQNVQIALDYLRHRQVKLVNI-RNDDIADGNP   97 (120)
T ss_dssp             SCTTTTTTTSHHHHHHHHHHHCCCCCCC-C-----C-CSHHHHHHHHHHHHHHHHHTTCCCCSC-CHHHHHTTCH
T ss_pred             chHHHHhccHHHHHHHHHHhCCCccccC-C-----C-CCHHHHHHHHHHHHHHHHHhcccccCC-cHHhhccCcH
Confidence            3688999999999999999999987632 1     1 236889999999999999999987665 9999998853

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.5e-09  Score=65.32  Aligned_cols=72  Identities=13%  Similarity=0.270  Sum_probs=55.1

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCC-CCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPS-PAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~-~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k   78 (88)
                      .+|.+.++||++||.|++.+.|+.++...... ....+.......+|...++++++.+|++.  .-+++|+.++.
T Consensus        31 ~nf~~dl~DG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~lgi~~--~i~~eDIv~gn  103 (116)
T d1aoaa2          31 NNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCRQ--FVTPADVVSGN  103 (116)
T ss_dssp             SCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHTTTTCCC--SCCHHHHHTTC
T ss_pred             eeccccccccHHHHHHHHHHCcccccccccccccccCcchHHHHHHHHHHHHHHHHHhCCCc--CcCHHhCcCCC
Confidence            35778999999999999999999887432211 11122345778899999999999999975  36999999864

>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1e-08  Score=62.50  Aligned_cols=67  Identities=22%  Similarity=0.255  Sum_probs=55.6

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .++.+.|+||++||+|++.+.|..++...      |+ +.+...+|++.-|+++++.|++-..+ .+.|+.+|.-
T Consensus        30 ~nl~~Dl~DG~~L~~Lle~l~~~~~~~~~------~~-~r~~~l~N~~~aL~~~k~~~~~~~~i-~~~dI~~Gn~   96 (111)
T d1dxxa1          30 ENLFSDLQDGRRLLDLLEGLTGQKLPKEK------GS-TRVHALNNVNKALRVLQNNNVDLVNI-GSTDIVDGNH   96 (111)
T ss_dssp             SCTTTTTTTSHHHHHHHHHHHSCCCCCCC------CS-SHHHHHHHHHHHHHHHHHTTCCCTTC-CHHHHHTTCH
T ss_pred             hhHHHHhcchHHHHHHHHHHcCCcCCCCC------CC-cHhhHHHHHHHHHHHHHHhCCcccCC-CHHHHHcCCH
Confidence            46888999999999999999999876422      11 36889999999999999999987665 8999998764

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.64  E-value=2.2e-08  Score=74.47  Aligned_cols=71  Identities=18%  Similarity=0.316  Sum_probs=57.3

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k   78 (88)
                      +++++.|+||++||+|++.+.|+.++......  .+....|+..||++.-|+++++.|+.-..+ .++|+.+|.
T Consensus        31 ~dL~~dl~DG~~L~~Lle~ls~~~l~~~~~~~--~~~~~r~~~~eN~~~aL~~~k~~gi~lvnI-~~~dIvdGn  101 (500)
T d1pxya_          31 NQLYELVKDGVLLCKLINVAVPGTIDERAINT--KRVLNPWERNENHTLCLNSAKAVGCSVVNI-GTQDLAEGR  101 (500)
T ss_dssp             SHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCC--CSSCCHHHHHHHHHHHHHHHHHTTCCCTTC-CHHHHHHTC
T ss_pred             HHHHHHhhhHHHHHHHHHHHcCCccchhhhcC--CCCccHHHHHHHHHHHHHHHHHcCCEEecc-ChhhhhcCC
Confidence            58999999999999999999999987422111  112347899999999999999999987775 788888865

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.37  E-value=3.4e-07  Score=67.84  Aligned_cols=74  Identities=14%  Similarity=0.273  Sum_probs=58.1

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .++++.|+||++||+|++++.|+.+.  ++..++...+....++..+|++.-|+++++.|++-..+ .+.|+.+|.-
T Consensus       296 ~dL~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~~~~~r~~~ieN~~~al~~~~~~~i~lv~I-~~~dIvdGn~  371 (505)
T d1rt8a_         296 HDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGFSLVGI-QGADITDGSR  371 (505)
T ss_dssp             SCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHHHHHHHHHTTCCCTTC-CHHHHHTTCH
T ss_pred             HHHHhccccHHHHHHHHHHhCCCCcCchhcccccccccchhHHHHHHHHHHHHHHHHHhCcccccC-ChHhhhhcCh
Confidence            37999999999999999999999885  34333221122347899999999999999999976664 8889988764

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.21  E-value=1.2e-06  Score=64.78  Aligned_cols=72  Identities=17%  Similarity=0.337  Sum_probs=54.5

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCc--ccCCCCCCcchhhhHHHHHHHHHHHHHHHh-CCCCCCCCCCCcccccC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVAS--IHVPSPAVPKLTMARCRRNVDNFLEACRKI-GVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~--I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~-Gv~~~~lF~~~DL~e~k   78 (88)
                      .++++.|+||++||+|++.+.|+.+..  +..+.. ..+...+...+|++..|+++++. |+.-..+ .+.|+.+|.
T Consensus        34 ~dL~~dl~DG~~L~~Lle~l~~~~i~~~~l~~~~~-~~~~~~~~~leNv~~aL~~~k~~~~~~~~nI-~~~dI~dg~  108 (505)
T d1rt8a_          34 FEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRN-NKPLDNFKCIENNNVVINSAKAMGGISITNI-GAGDILEGR  108 (505)
T ss_dssp             THHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCCC----CCCHHHHHHHHHHHHHHHHHHSSCCCSSC-CHHHHHTTC
T ss_pred             hhHHHHHhhHHHHHHHHHHHcCCCcchhhhccccc-ccchhhhhHHHHHHHHHHHHHhcCCceeecc-Ccccccccc
Confidence            479999999999999999999998853  322221 11234789999999999999875 6766665 688888764

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.17  E-value=1.5e-06  Score=64.36  Aligned_cols=72  Identities=17%  Similarity=0.246  Sum_probs=56.7

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccCC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDATQ   79 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn   79 (88)
                      .+++..|+||++||+|++.+.|+.++.-....  .|..+.++..+|++..|+++++.|++-..+ .++|+.+|.-
T Consensus       289 ~dL~~dl~DG~~L~~Lle~l~~~~~~~~~~~~--~~~~~~~~ki~N~~~al~~~~~~gi~l~~I-~~~DI~dG~~  360 (500)
T d1pxya_         289 NNVFEDVRNGWILLEVLDKVSPSSVNWKHASK--PPIKMPFRKVENCNQVIKIGKQLKFSLVNV-AGNDIVQGNK  360 (500)
T ss_dssp             SCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCC--SSCCCHHHHHHHHHHHHHHHHHTTCCCCSC-CHHHHHTTCH
T ss_pred             chHHHHHhhhHHHHHHHHHhcCCCCChhhcCC--CcccchHHHHHHHHHHHHHHHHcCCccCCC-ChHHhhccch
Confidence            47899999999999999999999886322111  111236889999999999999999977665 7889888764

>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=9.3e-06  Score=50.23  Aligned_cols=64  Identities=17%  Similarity=0.316  Sum_probs=49.9

Q ss_pred             HHHccchHHHHHHHHhhcCCCCC--cccCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCCCCCCCcccccC
Q psy5526           8 GPALSDGVVLCHLANHVRPRSVA--SIHVPSPAVPKLTMARCRRNVDNFLEACRKIGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         8 ~~~LrdGv~LC~L~N~l~P~~i~--~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~k   78 (88)
                      .|.|.+|++.|++++.+.||+|+  +|+....     ..+....|...+-++-.++|++..  ++.+.|..++
T Consensus        23 iEel~tGa~yCQl~d~l~Pg~i~l~kVkf~a~-----~e~e~~~N~klLq~af~kl~I~k~--i~v~kLikgk   88 (120)
T d2qjza1          23 IEQLCSGAAYCQFMDMLFPGSIALKKVKFQAK-----LEHEYIQNFKILQAGFKRMGVDKI--IPVDKLVKGK   88 (120)
T ss_dssp             GGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCC-----SHHHHHHHHHHHHHHHHHHTCCCC--CCHHHHTTCC
T ss_pred             HHHhcccHHHHHHHHHHCcCcchHhhhccCCC-----CHHHHHHHHHHHHHHHHHcCCCCC--CCHHHHhccc
Confidence            46799999999999999999987  5654321     267888999999999999999863  4556665554

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=7.6e-06  Score=50.73  Aligned_cols=63  Identities=17%  Similarity=0.308  Sum_probs=48.2

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCc--ccCCCCCCcchhhhHHHHHHHHHHHHH-HHhCCCCCCCCCCCcccccC
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVAS--IHVPSPAVPKLTMARCRRNVDNFLEAC-RKIGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~--I~~~~~~~~~~~~f~~~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~k   78 (88)
                      ++|-.+.+||.++|.|++.+.|+.++.  +...         ....+|++.-++.+ +.+|+|.  ++++.|+..+.
T Consensus        38 ~NFs~sw~DG~a~~aLih~~~P~li~~~~~l~~---------~~~~~~~~~a~~~Ae~~lgip~--ll~~~d~~~~~  103 (127)
T d1dxxa2          38 INFTTSWSDGLALNALIHSHRPDLFDWNSVVSQ---------QSATQRLEHAFNIARYQLGIEK--LLDPEDVDTTY  103 (127)
T ss_dssp             CSSSGGGTTSHHHHHHHHHHCGGGSCHHHHHTC---------CCHHHHHHHHHHHHHHTTCCCC--CCCHHHHSSSS
T ss_pred             cCCccccccHHHHHHHHHHHCcccccchhhcCc---------CCHHHHHHHHHHHHHHhCCCCC--cCCHHHhccCC
Confidence            467788999999999999999998863  2221         12458998888877 6699984  77999986543

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=5.9e-06  Score=50.07  Aligned_cols=63  Identities=17%  Similarity=0.275  Sum_probs=46.5

Q ss_pred             hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHH-HHhCCCCCCCCCCCcccccC
Q psy5526           6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEAC-RKIGVEEGDLCDRDSIVDAT   78 (88)
Q Consensus         6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~k   78 (88)
                      +|-.+.+||.++|.|++.+.|+.++.-...        .-...+|+..-++.+ +.+|+|.  +.++.|+..++
T Consensus        29 nFs~sw~DG~afcaLih~~~P~~id~~~l~--------~~~~~~~~~~a~~~Ae~~lgip~--ll~~eD~~~~~   92 (110)
T d1sh5a2          29 NFTTSWRDGRLFNAIIHRHKPMLIDMNKVY--------RQTNLENLDQAFSVAERDLGVTR--LLDPEDVDVPQ   92 (110)
T ss_dssp             CSSGGGTTSHHHHHHHHTTCTTTCCHHHHH--------HSCHHHHHHHHHHHHHHHHCCCC--CCCHHHHSSSS
T ss_pred             CCcccccCcHHHHHHHHHHCcccCChhhcC--------ccCHHHHHHHHHHHHHHcCCCCC--CCCHHHHccCC
Confidence            577889999999999999999987621110        011358888877766 7799984  67899986544

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.9e-05  Score=47.39  Aligned_cols=63  Identities=17%  Similarity=0.318  Sum_probs=46.6

Q ss_pred             hhHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHH-HHhCCCCCCCCCCCccccc
Q psy5526           5 EELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEAC-RKIGVEEGDLCDRDSIVDA   77 (88)
Q Consensus         5 ~~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~   77 (88)
                      .+|-...+||.++|.|++.+.|+.+..-.....        ...+|+...+..+ +.+|+|.  +.++.|+..+
T Consensus        24 ~nFs~sw~DG~af~aLi~~~~P~~~~~~~l~~~--------~~~~~~~~a~~~ae~~lgip~--ll~~ed~~~~   87 (108)
T d1bkra_          24 HNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKS--------NAHYNLQNAFNLAEQHLGLTK--LLDPEDISVD   87 (108)
T ss_dssp             SSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCTT--------CHHHHHHHHHHHHHHHHCCCC--CCCHHHHSSS
T ss_pred             ccCCCcccCcHHHHHHHHHHCcCcccHHhcccC--------CHHHHHHHHHHHHHHhcCCCC--cCCHHhccCC
Confidence            467788999999999999999998863221110        1347888888877 5699985  5688887654

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=6.5e-06  Score=49.63  Aligned_cols=62  Identities=13%  Similarity=0.247  Sum_probs=46.4

Q ss_pred             hHHHHccchHHHHHHHHhhcCCCCCcccCCCCCCcchhhhHHHHHHHHHHHHH-HHhCCCCCCCCCCCccccc
Q psy5526           6 ELGPALSDGVVLCHLANHVRPRSVASIHVPSPAVPKLTMARCRRNVDNFLEAC-RKIGVEEGDLCDRDSIVDA   77 (88)
Q Consensus         6 ~~~~~LrdGv~LC~L~N~l~P~~i~~I~~~~~~~~~~~~f~~~eNI~~FL~~c-~~~Gv~~~~lF~~~DL~e~   77 (88)
                      +|-.+.+||.++|.|++.+.|+.++.-..        ..-...+|+..-++.+ +.+|+|.  +.++.|+..+
T Consensus        28 nFs~sw~DG~a~caLih~~~P~~i~~~~l--------~~~~~~~~~~~af~~a~~~lgip~--ll~~~D~~~~   90 (108)
T d1bhda_          28 NFTTSWTDGLAFNAVLHRHKPDLFSWDKV--------VKMSPIERLEHAFSKAQTYLGIEK--LLDPEDVAVR   90 (108)
T ss_dssp             SSSGGGTTSHHHHHHHHHHCGGGSCHHHH--------HHSCHHHHHHHHHHHHHHHHCCCC--CSCHHHHHTS
T ss_pred             cCccccccchHHHHHHHHHCccccChhhc--------CcCCHHHHHHHHHHHHHHhCCCCC--CCCHHHhccC
Confidence            57788999999999999999998762111        0112358888877776 6699984  7789998654

>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Hook domain
family: Hook domain
domain: Hook homolog 1, Hook1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.21  E-value=1.1  Score=27.66  Aligned_cols=49  Identities=12%  Similarity=0.117  Sum_probs=33.0

Q ss_pred             HHHccchHHHHHHHHhhcCCCCC-----cccCCCCCCcchhhhHHHHHHHHHHHHHHH
Q psy5526           8 GPALSDGVVLCHLANHVRPRSVA-----SIHVPSPAVPKLTMARCRRNVDNFLEACRK   60 (88)
Q Consensus         8 ~~~LrdGv~LC~L~N~l~P~~i~-----~I~~~~~~~~~~~~f~~~eNI~~FL~~c~~   60 (88)
                      .+.|.||++|.+.++.+.|..-.     +++..    +...-...+.|+..-++..+.
T Consensus        30 ~~dL~DGv~l~~iL~qIdP~~f~~~~~~~~~~d----~~~nw~lr~~NLk~i~~~i~~   83 (164)
T d1wixa_          30 VKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDD----VGDNWRIKASNLKKVLHGITS   83 (164)
T ss_dssp             HHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSG----GGGCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhchHHHHHHHHHhCccccCchhhhccccc----ccccHHHHHHHHHHHHHHHHH
Confidence            67899999999999999997543     22211    110112356788888887765

>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.18  E-value=0.43  Score=28.86  Aligned_cols=22  Identities=23%  Similarity=0.525  Sum_probs=18.9

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCC
Q psy5526          45 ARCRRNVDNFLEACRKIGVEEG   66 (88)
Q Consensus        45 f~~~eNI~~FL~~c~~~Gv~~~   66 (88)
                      -+++|.+..|++||+++|+...
T Consensus        89 ~~q~e~L~~f~~~ck~~g~~r~  110 (133)
T d1hx8a1          89 LVRMDRVGEFLKVAENVGIDKG  110 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHHHHHHHcCcccc
Confidence            4789999999999999998543

>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: Clathrin assembly lymphoid myeloid leukaemia protein, Calm
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.77  E-value=0.44  Score=28.74  Aligned_cols=21  Identities=14%  Similarity=0.476  Sum_probs=18.4

Q ss_pred             hHHHHHHHHHHHHHHHhCCCC
Q psy5526          45 ARCRRNVDNFLEACRKIGVEE   65 (88)
Q Consensus        45 f~~~eNI~~FL~~c~~~Gv~~   65 (88)
                      -.++|.+..|++||+++|+..
T Consensus        92 ~~q~e~L~~f~~~ck~~g~~r  112 (132)
T d1hf8a1          92 LTRMTRISEFLKVAEQVGIDR  112 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCG
T ss_pred             HHHHHHHHHHHHHHHHcCCcc
Confidence            478999999999999999844