Psyllid ID: psy5528

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLIIHTMVRLFNQHKIYTTSLRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHccHEEEHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHccc
Coil and Loop (DISEMBL)
mkallhytpseDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLhsqidtshFFWLVTYFLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVkqhkginldpyVRRLHLIIHTMVRLFNQHKIYTTSLRRRMRKKKKVEKEEEEEKKKKNkrkgkrnnnnkkkkneeeeeeee
Flexible Loop (DISEMBL)
MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLIIHTMVrlfnqhkiyttslrrrmrkkkkvekeeeeekkkknkrkgkrnnnnkkkkneeeeeeee
Low Complexity Region (SEG)
MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLIIHTMVRLFNQHKIYTTSLrrrmrkkkkvekeeeeekkkknkrkgkrnnnnkkkkneeeeeeee
Disordered region (IsUnstruct)
***********DDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLIIHTMVRLFNQHKIYTTS**********************************************
Disordered Region (DISOPRED)
********PSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLIIHTMVRLFNQHK***************************************************
Disordered Region (DISEMBL)
MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLIIHTMVRLFNQHKIYTTSL*********************************************
Disordered Region (DISPRO)
*KALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLIIHTMVRLFNQHKIYTTSLR***RKKKKVEKEEEEEKK**************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLIIHTMVRLFNQHKIYTTSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	182	2.2.26 [Sep-21-2011]
P49021	1421	Protein timeless OS=Droso	yes	N/A	0.703	0.090	0.542	1e-39
O17482	1343	Protein timeless OS=Droso	N/A	N/A	0.703	0.095	0.534	3e-38
O44431	676	Protein timeless (Fragmen	N/A	N/A	0.703	0.189	0.542	9e-38

>sp|P49021|TIM_DROME Protein timeless OS=Drosophila melanogaster GN=tim PE=1 SV=2

 Score =  162 bits (410), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 70/129 (54%), Positives = 105/129 (81%), Gaps = 1/129 (0%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY 60
           MK L+ +TP++DDI++LLKEFTVDFLLKGY  LV +L+  L+++    IDTSHFFWLVTY
Sbjct: 591 MKGLVQHTPTDDDISNLLKEFTVDFLLKGYSYLVEELHMQLLSNAKVPIDTSHFFWLVTY 650

Query: 61  FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
           FLKF  QLELD++H+ +++++D++SYL++EG++LCE L++  + +G +L PY+RR+HL++
Sbjct: 651 FLKFAAQLELDMEHIDTILTYDVLSYLTYEGVSLCEQLELNARQEGSDLKPYLRRMHLVV 710

Query: 121 HTMVRLFNQ 129
            T +R F Q
Sbjct: 711 -TAIREFLQ 718

Required for the production of circadian rhythms. The biological cycle depends on the rhythmic formation and nuclear localization of the TIM-PER complex. Light induces the degradation of TIM, which promotes elimination of PER. Nuclear activity of the heterodimer coordinatively regulates PER and TIM transcription through a negative feedback loop. Behaves as a negative element in circadian transcriptional loop. Does not appear to bind DNA, suggesting indirect transcriptional inhibition.
Drosophila melanogaster (taxid: 7227)

>sp|O17482|TIM_DROVI Protein timeless OS=Drosophila virilis GN=tim PE=2 SV=1

 Score =  157 bits (398), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/129 (53%), Positives = 105/129 (81%), Gaps = 1/129 (0%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY 60
           MK L+ +TP++DDI++LLKEFTVDFLLKGY  LV +L+  L+++    IDTSHFFWLVT+
Sbjct: 535 MKGLVLHTPNDDDISNLLKEFTVDFLLKGYNYLVEELHSQLLSNAKMPIDTSHFFWLVTF 594

Query: 61  FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
           FLKF  QLELD++H+ ++++FD++S+L++EG++LCE L++  + +G +L PY+RR+HL++
Sbjct: 595 FLKFAAQLELDMEHIDTILTFDVLSFLTYEGVSLCEQLELNARQEGADLRPYLRRMHLVV 654

Query: 121 HTMVRLFNQ 129
            T +R F Q
Sbjct: 655 -TAIREFLQ 662

Required for the production of circadian rhythms. The biological cycle depends on the rhythmic formation and nuclear localization of the TIM-PER complex. Light induces the degradation of TIM, which promotes elimination of PER. Nuclear activity of the heterodimer coordinatively regulates PER and TIM transcription through a negative feedback loop. Behaves as a negative element in circadian transcriptional loop. Does not appear to bind DNA, suggesting indirect transcriptional inhibition.

Drosophila virilis (taxid: 7244)

>sp|O44431|TIM_DROHY Protein timeless (Fragment) OS=Drosophila hydei GN=tim PE=3 SV=1

 Score =  155 bits (393), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 70/129 (54%), Positives = 100/129 (77%), Gaps = 1/129 (0%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY 60
           MK L+ +TP+  DI++LLKEFTVDFLLKGY  LV +L   L+T     IDTSHFFWLVT+
Sbjct: 406 MKGLVQHTPTNYDISNLLKEFTVDFLLKGYNYLVEELLKQLLTSAKVLIDTSHFFWLVTF 465

Query: 61  FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
           FLK   QLELD++H+ S++++D++SYL++EG++LCE L++  Q +G +L PY+RR+HL++
Sbjct: 466 FLKLAAQLELDMEHIDSILTYDVLSYLTYEGVSLCEQLELNAQQEGSDLQPYLRRMHLVV 525

Query: 121 HTMVRLFNQ 129
            T +R F Q
Sbjct: 526 -TAIREFLQ 533

Required for the production of circadian rhythms. The biological cycle depends on the rhythmic formation and nuclear localization of the TIM-PER complex. Light induces the degradation of TIM, which promotes elimination of PER. Nuclear activity of the heterodimer coordinatively regulates PER and TIM transcription through a negative feedback loop. Behaves as a negative element in circadian transcriptional loop. Does not appear to bind DNA, suggesting indirect transcriptional inhibition.

Drosophila hydei (taxid: 7224)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
406507559	1082	timeless [Clunio marinus]	0.703	0.118	0.612	1e-42
359270180	1209	TIMELESS [Thermobia domestica]	0.703	0.105	0.6	1e-40
305682544	1181	TIMELESS [Gryllus bimaculatus]	0.703	0.108	0.6	1e-40
158296838	1263	AGAP008288-PA [Anopheles gambiae str. PE	0.703	0.101	0.596	2e-40
367461163	1251	timeless [Aedes albopictus]	0.703	0.102	0.596	4e-40
37544978	791	timeless [Periplaneta americana]	0.703	0.161	0.6	2e-39
63365252	1300	TIMELESS [Aedes aegypti]	0.703	0.098	0.589	2e-39
157113339	1300	timeless protein [Aedes aegypti] gi|1088	0.703	0.098	0.589	2e-39
157113337	1291	timeless protein [Aedes aegypti] gi|1088	0.703	0.099	0.589	3e-39
114651559	1590	timeless [Neobellieria bullata]	0.703	0.080	0.565	4e-39

>gi|406507559|gb|AFS34623.1| timeless [Clunio marinus]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/129 (61%), Positives = 106/129 (82%), Gaps = 1/129 (0%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY 60
           MK L+H+TPS+DDI+++LKEFTVDFLLKGYG LV  L+  ++TDL   IDTSHFFWLVTY
Sbjct: 486 MKGLIHHTPSDDDISNILKEFTVDFLLKGYGCLVQDLHTKILTDLQLSIDTSHFFWLVTY 545

Query: 61  FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
           FLKF  QLELD++H+S V+S++I+SYL+FEG++LCE L++    KG +L PY+RR+HL++
Sbjct: 546 FLKFAAQLELDLEHISPVLSYEIVSYLTFEGVSLCEQLELTSPQKGNDLRPYLRRIHLVV 605

Query: 121 HTMVRLFNQ 129
            T +R F Q
Sbjct: 606 -TAIREFLQ 613

Source: Clunio marinus

Species: Clunio marinus

Genus: Clunio

Family: Chironomidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|359270180|dbj|BAL27710.1| TIMELESS [Thermobia domestica]

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/130 (60%), Positives = 106/130 (81%), Gaps = 2/130 (1%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHS-QIDTSHFFWLVT 59
           MKALLH+ PS++DI++LLKEFTVDFLLKGYG LV +L+  L+      Q+DTSHFFWLVT
Sbjct: 484 MKALLHHVPSDEDISNLLKEFTVDFLLKGYGCLVQELHSQLLNPKQIIQVDTSHFFWLVT 543

Query: 60  YFLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLI 119
           YFLKF  QLEL+++H+S V+SF+IISYL++EG+NLCE L++  +H G +L P++RR+HL+
Sbjct: 544 YFLKFATQLELELEHISPVLSFEIISYLTYEGVNLCEQLEVATRHPGSDLKPFLRRMHLV 603

Query: 120 IHTMVRLFNQ 129
           + T +R F Q
Sbjct: 604 V-TAIRGFIQ 612

Source: Thermobia domestica

Species: Thermobia domestica

Genus: Thermobia

Family: Lepismatidae

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|305682544|dbj|BAJ16356.1| TIMELESS [Gryllus bimaculatus]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/130 (60%), Positives = 106/130 (81%), Gaps = 2/130 (1%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHS-QIDTSHFFWLVT 59
           MKALLH+ PS++DI++LLKEFTVDFLLKGYG LV +L+  L+      Q+DTSHFFWLVT
Sbjct: 475 MKALLHHVPSDEDISNLLKEFTVDFLLKGYGCLVQELHSQLLNPKQIIQVDTSHFFWLVT 534

Query: 60  YFLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLI 119
           YFLKF  QLEL+++H+S V+SF+IISYL++EG+NLCE L++  +H G +L P++RR+HL+
Sbjct: 535 YFLKFATQLELELEHISPVLSFEIISYLTYEGVNLCEQLEVATRHPGSDLKPFLRRMHLV 594

Query: 120 IHTMVRLFNQ 129
           + T +R F Q
Sbjct: 595 V-TAIRGFIQ 603

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158296838|ref|XP_001689006.1| AGAP008288-PA [Anopheles gambiae str. PEST] gi|157014904|gb|EDO63569.1| AGAP008288-PA [Anopheles gambiae str. PEST]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 105/129 (81%), Gaps = 1/129 (0%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY 60
           MK L+H+ P++DDI+H+LKEFTVDFLLKGYG LV +L+  L++DL  QIDTSHFFWLVTY
Sbjct: 539 MKGLMHHVPTDDDISHILKEFTVDFLLKGYGYLVHELHTQLLSDLQVQIDTSHFFWLVTY 598

Query: 61  FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
           FLKF  QLELD++H++SV+SFDIISYL++EG+ LCE L+ + +    ++ P +RR+HL++
Sbjct: 599 FLKFATQLELDLEHINSVLSFDIISYLTYEGVMLCEQLEQLSRATETDIKPCLRRIHLVV 658

Query: 121 HTMVRLFNQ 129
            T +R F Q
Sbjct: 659 -TAIREFLQ 666

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|367461163|gb|AEX14536.1| timeless [Aedes albopictus]

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 105/129 (81%), Gaps = 1/129 (0%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY 60
           MK L+H+ PS+DDI+H+LKEFTVDFLLKGYG LV +L+  L++DL  QIDTSHF WLVTY
Sbjct: 526 MKGLMHHAPSDDDISHILKEFTVDFLLKGYGFLVQELHAQLLSDLQVQIDTSHFGWLVTY 585

Query: 61  FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
           FLKF  QLELD++H+++V+SFDI+SYL++EG+ LCE L+ + +   I+L P +RR+HL++
Sbjct: 586 FLKFASQLELDLEHINTVLSFDIVSYLAYEGVMLCEQLEQLSREPQIDLLPCLRRIHLVV 645

Query: 121 HTMVRLFNQ 129
            T +R F Q
Sbjct: 646 -TAIREFLQ 653

Source: Aedes albopictus

Species: Aedes albopictus

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|37544978|gb|AAM77468.1| timeless [Periplaneta americana]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/130 (60%), Positives = 104/130 (80%), Gaps = 2/130 (1%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHS-QIDTSHFFWLVT 59
           +KALLH+TP+++DI++LLK+FTVDFLLKGYG LV  L+  L+    S QIDTSHFFWLVT
Sbjct: 256 VKALLHHTPTDEDISNLLKKFTVDFLLKGYGCLVEDLHHQLLRSKQSVQIDTSHFFWLVT 315

Query: 60  YFLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLI 119
           YFLKF  QLEL++DH+  V+SF+I+SYL FEG+NLCE L++  Q +G +L P +RR+HL+
Sbjct: 316 YFLKFAAQLELELDHIRPVLSFEIVSYLXFEGVNLCEQLELATQQQGSDLKPCLRRMHLV 375

Query: 120 IHTMVRLFNQ 129
           + T +R F Q
Sbjct: 376 V-TAIREFIQ 384

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|63365252|gb|AAY40757.1| TIMELESS [Aedes aegypti]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 105/129 (81%), Gaps = 1/129 (0%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY 60
           MK L+H+ PS+DDI+H+LKEFTVDFLLKGYG LV +L+  L++DL  QIDTSHFFWLVTY
Sbjct: 564 MKGLMHHAPSDDDISHILKEFTVDFLLKGYGFLVQELHAQLLSDLQVQIDTSHFFWLVTY 623

Query: 61  FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
           FLKF  QLELD++H+++V+SF+I+SYL++EG+ LCE L+ + +    +L P +RR+HL++
Sbjct: 624 FLKFASQLELDLEHINTVLSFEIVSYLAYEGVMLCEQLEQLNREPHNDLLPCLRRIHLVV 683

Query: 121 HTMVRLFNQ 129
            T +R F Q
Sbjct: 684 -TAIREFLQ 691

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113339|ref|XP_001657784.1| timeless protein [Aedes aegypti] gi|108877774|gb|EAT41999.1| AAEL006411-PB [Aedes aegypti]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 105/129 (81%), Gaps = 1/129 (0%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY 60
           MK L+H+ PS+DDI+H+LKEFTVDFLLKGYG LV +L+  L++DL  QIDTSHFFWLVTY
Sbjct: 564 MKGLMHHAPSDDDISHILKEFTVDFLLKGYGFLVQELHAQLLSDLQVQIDTSHFFWLVTY 623

Query: 61  FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
           FLKF  QLELD++H+++V+SF+I+SYL++EG+ LCE L+ + +    +L P +RR+HL++
Sbjct: 624 FLKFASQLELDLEHINTVLSFEIVSYLAYEGVMLCEQLEQLNREPHNDLLPCLRRIHLVV 683

Query: 121 HTMVRLFNQ 129
            T +R F Q
Sbjct: 684 -TAIREFLQ 691

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113337|ref|XP_001657783.1| timeless protein [Aedes aegypti] gi|108877773|gb|EAT41998.1| AAEL006411-PA [Aedes aegypti]

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 105/129 (81%), Gaps = 1/129 (0%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY 60
           MK L+H+ PS+DDI+H+LKEFTVDFLLKGYG LV +L+  L++DL  QIDTSHFFWLVTY
Sbjct: 564 MKGLMHHAPSDDDISHILKEFTVDFLLKGYGFLVQELHAQLLSDLQVQIDTSHFFWLVTY 623

Query: 61  FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
           FLKF  QLELD++H+++V+SF+I+SYL++EG+ LCE L+ + +    +L P +RR+HL++
Sbjct: 624 FLKFASQLELDLEHINTVLSFEIVSYLAYEGVMLCEQLEQLNREPHNDLLPCLRRIHLVV 683

Query: 121 HTMVRLFNQ 129
            T +R F Q
Sbjct: 684 -TAIREFLQ 691

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114651559|dbj|BAB85487.2| timeless [Neobellieria bullata]

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 73/129 (56%), Positives = 105/129 (81%), Gaps = 1/129 (0%)

Query: 1   MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY 60
           MK L+ +TP+++DI++LLKEFTVDFLLKGYG LV  LY  L+T+L   ID+SHFFWLVTY
Sbjct: 572 MKGLVQHTPTDEDISNLLKEFTVDFLLKGYGYLVEDLYSQLLTNLKIPIDSSHFFWLVTY 631

Query: 61  FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
           FLKF  QLELD++H++++++FD+ISYL++EG+ LCE L++  + +G +L  Y+RR+HL++
Sbjct: 632 FLKFAAQLELDMEHINTILTFDVISYLTYEGVMLCEQLELNSRQEGSDLKSYMRRMHLVV 691

Query: 121 HTMVRLFNQ 129
            T +R F Q
Sbjct: 692 -TAIREFLQ 699

Source: Neobellieria bullata

Species: Neobellieria bullata

Genus: Neobellieria

Family: Sarcophagidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
FB|FBgn0014396	1421	tim "timeless" [Drosophila mel	0.703	0.090	0.542	6.2e-36
ZFIN|ZDB-GENE-030131-4580	1278	wu:fd23d07 "wu:fd23d07" [Danio	0.543	0.077	0.262	0.00019

FB|FBgn0014396 tim "timeless" [Drosophila melanogaster (taxid:7227)]

 Score = 401 (146.2 bits), Expect = 6.2e-36, P = 6.2e-36
 Identities = 70/129 (54%), Positives = 105/129 (81%)

Query:     1 MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTY 60
             MK L+ +TP++DDI++LLKEFTVDFLLKGY  LV +L+  L+++    IDTSHFFWLVTY
Sbjct:   591 MKGLVQHTPTDDDISNLLKEFTVDFLLKGYSYLVEELHMQLLSNAKVPIDTSHFFWLVTY 650

Query:    61 FLKFVVQLELDIDHVSSVISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
             FLKF  QLELD++H+ +++++D++SYL++EG++LCE L++  + +G +L PY+RR+HL++
Sbjct:   651 FLKFAAQLELDMEHIDTILTYDVLSYLTYEGVSLCEQLELNARQEGSDLKPYLRRMHLVV 710

Query:   121 HTMVRLFNQ 129
              T +R F Q
Sbjct:   711 -TAIREFLQ 718

GO:0071482 "cellular response to light stimulus" evidence=IMP

GO:0007623 "circadian rhythm" evidence=NAS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

GO:0005737 "cytoplasm" evidence=NAS;IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS;IDA;TAS

GO:0046982 "protein heterodimerization activity" evidence=NAS;TAS;IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:2000678 "negative regulation of transcription regulatory region DNA binding" evidence=IDA

GO:0048512 "circadian behavior" evidence=IMP

GO:0007617 "mating behavior" evidence=IMP

GO:0005634 "nucleus" evidence=IDA;NAS;TAS

GO:0045475 "locomotor rhythm" evidence=IGI;NAS

GO:0008062 "eclosion rhythm" evidence=NAS;TAS

GO:0030431 "sleep" evidence=NAS

GO:0045187 "regulation of circadian sleep/wake cycle, sleep" evidence=IMP;TAS

GO:0006606 "protein import into nucleus" evidence=NAS

GO:0007622 "rhythmic behavior" evidence=TAS

GO:0007620 "copulation" evidence=IMP

GO:0009649 "entrainment of circadian clock" evidence=TAS

GO:0042306 "regulation of protein import into nucleus" evidence=TAS

GO:0042749 "regulation of circadian sleep/wake cycle" evidence=IMP

GO:0009648 "photoperiodism" evidence=IMP

GO:0046957 "negative phototaxis" evidence=IMP

GO:0060086 "circadian temperature homeostasis" evidence=IMP

ZFIN|ZDB-GENE-030131-4580 wu:fd23d07 "wu:fd23d07" [Danio rerio (taxid:7955)]

 Score = 105 (42.0 bits), Expect = 0.00019, P = 0.00019
 Identities = 27/103 (26%), Positives = 51/103 (49%)

Query:    18 LKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSS 77
             L+EF +DFL   Y RL+  + + L+ +   Q D +++ W +T+F+ F        D VS 
Sbjct:   342 LREFCIDFLENCYNRLMYLVKEGLIRERAQQHDETYYMWALTFFMAFNRLQNFKPDVVSE 401

Query:    78 VISFDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLII 120
              IS     ++     N+  + +++   K  +   + RR+HL +
Sbjct:   402 TISIRTFHFIEK---NITNYYEMMLTDKS-DATSWSRRMHLAL 440


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.144   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      182       137   0.00091  102 3  11 22  0.47    30
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  560 (60 KB)
  Total size of DFA:  134 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.95u 0.14s 16.09t   Elapsed:  00:00:01
  Total cpu time:  15.95u 0.14s 16.09t   Elapsed:  00:00:01
  Start:  Thu Aug 15 15:40:03 2013   End:  Thu Aug 15 15:40:04 2013

GO:0003682 "chromatin binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49021	TIM_DROME	No assigned EC number	0.5426	0.7032	0.0900	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	182
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	6e-04

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 123 MVRLFNQHKIYTTSLRRRMRKKKKVEKEEEEEKKKKNKRKGKRNNNNKKKKNEEEEEEEE 182
            +      K  T  +++ + K +K  +EE++EKKKK     K+    +++K ++EEE+EE
Sbjct: 398 EIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457

Length = 482

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	182
KOG1974|consensus	1229		99.41
KOG1974|consensus	1229		98.33

>KOG1974|consensus

Probab=99.41  E-value=6.9e-13  Score=133.54  Aligned_cols=129  Identities=12%  Similarity=0.166  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhccc--cccchHHHHHHHHHHHHhhhhcCCcccceecceeeeehhhhhh
Q psy5528          12 DDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLH--SQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVISFDIISYLSF   89 (182)
Q Consensus        12 ~dIrlfLKEFcvdFL~~gYN~LV~~l~~~Llr~~~--~~~DeSyflWavtfFl~Fnr~l~f~le~VsevlSidif~yLt~   89 (182)
                      -+++-.|+.||++|++.|||.||+-.+..++++.+  ++|++.+++|..+||+.|.|+..|..- +++++|.+.||++. 
T Consensus       345 l~v~g~lr~~~~ev~e~~~n~l~~s~k~~~~~~~~~a~e~~~~sll~t~s~f~~f~r~s~~~~~-~se~~~~~~f~~~~-  422 (1229)
T KOG1974|consen  345 LNVHGSLRNFEDEVLEECYNQLMKSSKPHLLRQQPVAAEIVENSLLPTQSFFQGFFRNSSFKPP-ASETISDRMFHFNE-  422 (1229)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhhhhhhhhHhhcCccccccccchhhHHHHHHHHHhccccCCCc-hhhhhHHHHHHHHH-
Confidence            36788999999999999999999999999999875  899999999999999999999999988 99999999999999 


Q ss_pred             hhhhHHHHHHHHhhccCCCCCchhHHHHHH--HHHHHHHHHHHHHHhhhhhHHHhhhh
Q psy5528          90 EGINLCEHLQIVKQHKGINLDPYVRRLHLI--IHTMVRLFNQHKIYTTSLRRRMRKKK  145 (182)
Q Consensus        90 E~v~~~E~le~~~~~~~~dl~~w~RRLHLa--vkAirElL~tl~~y~ks~d~~~res~  145 (182)
                        .++++|++++.... +....|.++||.+  |+||+|++.....++-+...+++++.
T Consensus       423 --~s~t~y~~~~~~~~-k~~ea~e~~l~~~~~~k~~~ell~l~~~l~~~~~~e~~e~~  477 (1229)
T KOG1974|consen  423 --SSVTNYVEAAKDGR-KEVEAFELLLTAAKCVKQYLELLSLVNELDDCGSEEAVESQ  477 (1229)
T ss_pred             --HHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Confidence              68899999998875 5799999999999  99999999999999988888776654

>KOG1974|consensus

Probab=98.33  E-value=7.7e-07  Score=90.75  Aligned_cols=117  Identities=26%  Similarity=0.455  Sum_probs=108.4

Q ss_pred             CcccCCCCCChHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhccccccchHHHHHHHHHHHHhhhhcCCcccceeccee
Q psy5528           1 MKALLHYTPSEDDIAHLLKEFTVDFLLKGYGRLVSQLYDLLVTDLHSQIDTSHFFWLVTYFLKFVVQLELDIDHVSSVIS   80 (182)
Q Consensus         1 ~~~l~~~~pt~~dIrlfLKEFcvdFL~~gYN~LV~~l~~~Llr~~~~~~DeSyflWavtfFl~Fnr~l~f~le~VsevlS   80 (182)
                      |||.+++.|+...+.+-++++.++|...||-..|-.++.++..             ++++|.+|+.+.+..+.+.+.+++
T Consensus       537 ~~~~vq~~~r~~kkk~~~~~~~~~~~~~~ls~~v~~~~~e~s~-------------~~~l~~e~~~~~~~~~~i~~~vlt  603 (1229)
T KOG1974|consen  537 MKGVVQKKRRKRKKKNSLKEETVEFELKGLSYNVLSVLEELSD-------------LVTLFLEFASRRQLNPEISSTVLT  603 (1229)
T ss_pred             hhhhhhccccccchhccchhhhHHHHHHHhhhcchhhHHHhhh-------------hHHHHHHHHHHhhcCcccccchhh
Confidence            5899999999999999999999999999998888888888776             789999999999999999999999


Q ss_pred             eeehhhhhhhhhhHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy5528          81 FDIISYLSFEGINLCEHLQIVKQHKGINLDPYVRRLHLIIHTMVRLFNQHKIY  133 (182)
Q Consensus        81 idif~yLt~E~v~~~E~le~~~~~~~~dl~~w~RRLHLavkAirElL~tl~~y  133 (182)
                      +|+.+++..++   |+..+.++.+.+.+.++..++||..++|+||++++=-+|
T Consensus       604 ~d~~~~~~~~~---~~~~~a~s~~~s~~~~~q~~q~~~~l~~~re~~~~d~a~  653 (1229)
T KOG1974|consen  604 YDALSDLPYEG---EQQLEAASRQESIDVKDQLQQMHYLLKAIREFLQADKAH  653 (1229)
T ss_pred             hhhhhhcCchh---hhhhhHHhhhcccchhHHHHHHHHHHHHHHHHhhhhhhh
Confidence            99999999888   778999999988899999999999999999999984444

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	182
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 8/59 (13%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 136 SLR--RRMRKKKKVEKEEEEEKKK--------KNKRKGKRNNNNKKKKNEEE--EEEEE 182
           S+R  R  ++K+  E +   +  +        K+  +  +  + + +KN+      ++ 
Sbjct: 86  SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00