Psyllid ID: psy5601

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MTFTKTSQKFGQWSDIRANTVSLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQT
Secondary Structure (PSIPRED)
cccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEccccEEEEEEccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtftktsqkfgqwsdiRANTVSLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSvrsknetldseLKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTsvrsknetldseLKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQT
Flexible Loop (DISEMBL)
mtftktsqkfgqwsdiRANTVSLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVADSANAKKWEIELanlksnnlRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRkeltsvrsknetldselkcrdEEVKKltnakhavedkCKAAVELRkeltsvrsknetldselkcrdEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQT
Low Complexity Region (SEG)
MTFTKTSQKFGQWSDIRANTVSLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQT
Disordered region (IsUnstruct)
**********GQWSDIRANTVSLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNNLR********************************YIE*************************************************************************************************CKLLS*ENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI******
Disordered Region (DISOPRED)
MTFTKTSQKFGQWS****************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**********GQWSDIRANTVSLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQT
Disordered Region (DISPRO)
*TFTKTSQKFGQWSDIRANTVSLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINT****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTFTKTSQKFGQWSDIRANTVSLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVADSANxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKGVSEAxxxxxxxxxxxxxxxxxxxxxLKCRDEEVKKLTNAKHAVEDKCKAxxxxxxxxxxxxxxxxxxxxxLKCRDEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q9NSB8	354	Homer protein homolog 2 O	yes	N/A	0.540	0.412	0.344	2e-17
O88801	354	Homer protein homolog 2 O	yes	N/A	0.540	0.412	0.349	4e-17
Q9Z214	366	Homer protein homolog 1 O	no	N/A	0.737	0.543	0.311	8e-14
Q9Z2Y3	366	Homer protein homolog 1 O	no	N/A	0.559	0.412	0.364	9e-14
Q2KJ56	354	Homer protein homolog 1 O	no	N/A	0.551	0.420	0.362	2e-13
Q9QWW1	354	Homer protein homolog 2 O	yes	N/A	0.337	0.257	0.42	2e-11
Q86YM7	354	Homer protein homolog 1 O	no	N/A	0.551	0.420	0.337	7e-11
Q9NSC5	361	Homer protein homolog 3 O	no	N/A	0.559	0.418	0.288	3e-10
Q99JP6	356	Homer protein homolog 3 O	no	N/A	0.685	0.519	0.261	7e-09
Q9Z2X5	358	Homer protein homolog 3 O	no	N/A	0.466	0.351	0.274	3e-05

>sp|Q9NSB8|HOME2_HUMAN Homer protein homolog 2 OS=Homo sapiens GN=HOMER2 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 101/212 (47%), Gaps = 66/212 (31%)

Query: 1   MTFTKTSQKFGQWSDIRANTVSLV----QAQLDTL------------LASQDAQRRIIDT 44
           MTFTKTSQKFGQW+D RANTV  +    + QL               +A    Q +I  +
Sbjct: 65  MTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFQEVKEAAKIAKDKTQEKIETS 124

Query: 45  LNH-QLAGRVADS----------------------------------------ANAKKWE 63
            NH Q +GR   S                                        AN KKWE
Sbjct: 125 SNHSQESGRETPSSTQASSVNGTDDEKASHAGPANTHLKSENDKLKIALTQSAANVKKWE 184

Query: 64  IELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVE 123
           IEL  L+ +N RLT+ALQES A+VE+WK+Q    ++EN +L+ K  ELE      E   E
Sbjct: 185 IELQTLRESNARLTTALQESAASVEQWKRQFSICRDENDRLRNKIDELE------EQCSE 238

Query: 124 LRKEL---TSVRSKNETLDSELKCRDEEVKKL 152
           + +E    T ++ + E L++EL+ ++ E+K L
Sbjct: 239 INREKEKNTQLKRRIEELEAELREKETELKDL 270

Postsynaptic density scaffolding protein. Binds and cross-links cytoplasmic regions of GRM1, GRM5, ITPR1, DNM3, RYR1, RYR2, SHANK1 and SHANK3. By physically linking GRM1 and GRM5 with ER-associated ITPR1 receptors, it aids the coupling of surface receptors to intracellular calcium release. May also couple GRM1 to PI3 kinase through its interaction with AGAP2. Isoforms can be differently regulated and may play an important role in maintaining the plasticity at glutamatergic synapses.
Homo sapiens (taxid: 9606)

>sp|O88801|HOME2_RAT Homer protein homolog 2 OS=Rattus norvegicus GN=Homer2 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 104/212 (49%), Gaps = 66/212 (31%)

Query: 1   MTFTKTSQKFGQWSDIRANTVSLV----QAQLDTL------------LASQDAQRRIIDT 44
           MTFTKTSQKFGQW+D RANTV  +    + QL               LA   +Q +I  +
Sbjct: 65  MTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFQEVREAARLARDKSQEKIETS 124

Query: 45  LNH-QLAG-----------------------RVADS-----------------ANAKKWE 63
            NH Q +G                         AD+                 AN KKWE
Sbjct: 125 SNHSQESGCETPSSTQASSVNGTDDEKASHASPADTHLKSENDKLKIALTQSAANVKKWE 184

Query: 64  IELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVE 123
           IEL  L+ +N RLT+ALQES A+VE+WK+Q    ++EN +L++K  ELE   G      E
Sbjct: 185 IELQTLRESNARLTTALQESAASVEQWKRQFSICRDENDRLRSKIEELEEQCG------E 238

Query: 124 LRKEL---TSVRSKNETLDSELKCRDEEVKKL 152
           + +E    T ++ + E L+SE++ ++ E+K L
Sbjct: 239 INREKEKNTQLKRRIEELESEVREKEMELKDL 270

Postsynaptic density scaffolding protein. Binds and cross-links cytoplasmic regions of GRM1, GRM5, ITPR1, DNM3, RYR1, RYR2, SHANK1 and SHANK3. By physically linking GRM1 and GRM5 with ER-associated ITPR1 receptors, it aids the coupling of surface receptors to intracellular calcium release. May also couple GRM1 to PI3 kinase through its interaction with AGAP2. Isoforms can be differently regulated and may play an important role in maintaining the plasticity at glutamatergic synapses.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z214|HOME1_RAT Homer protein homolog 1 OS=Rattus norvegicus GN=Homer1 PE=1 SV=2

 Score = 77.8 bits (190), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 116/244 (47%), Gaps = 45/244 (18%)

Query: 14  SDIRANTVSLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNN 73
            D+  N+    +   + L  S  A  R    L+H      A SA +K WE ELA LK NN
Sbjct: 154 PDVTQNSEPRAEPAQNALPFSHSAGDRT-QGLSH------ASSAISKHWEAELATLKGNN 206

Query: 74  LRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRS 133
            +LT+AL ESTANV++WK+QL AY+EE ++L  +  ELE    VS  A  +    T +  
Sbjct: 207 AKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELEC---VSSQANAVHSHKTELSQ 263

Query: 134 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEE 193
             + L+  LK ++EE+++                 L++E+ + R   E  DS        
Sbjct: 264 TVQELEETLKVKEEEIER-----------------LKQEIDNARELQEQRDS-------- 298

Query: 194 VKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGR 253
              LT     VE +       N +L+  +S ++ +L+   + QDA R  + TL   L G+
Sbjct: 299 ---LTQKLQEVEIR-------NKDLEGQLSELEQRLEKSQSEQDAFRSNLKTLLEILDGK 348

Query: 254 VAEL 257
           + EL
Sbjct: 349 IFEL 352

Postsynaptic density scaffolding protein. Binds and cross-links cytoplasmic regions of GRM1, GRM5, ITPR1, DNM3, RYR1, RYR2, SHANK1 and SHANK3. By physically linking GRM1 and GRM5 with ER-associated ITPR1 receptors, it aids the coupling of surface receptors to intracellular calcium release. May also couple GRM1 to PI3 kinase through its interaction with AGAP2. Differentially regulates the functions of the calcium activated channel ryanodine receptors RYR1 and RYR2. Isoform 1 decreases the activity of RYR2, and increases the activity of RYR1, whereas isoform 3 counteracts the effects by competing for binding sites. Isoform 1 regulates the trafficking and surface expression of GRM5. Isoform 3 acts as a natural dominant negative, in dynamic competition with constitutively expressed isoform 1, and isoform 2 to regulate synaptic metabotropic glutamate function. Isoform 3, may be involved in the structural changes that occur at synapses during long-lasting neuronal plasticity and development.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z2Y3|HOME1_MOUSE Homer protein homolog 1 OS=Mus musculus GN=Homer1 PE=1 SV=2

 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 91/162 (56%), Gaps = 11/162 (6%)

Query: 54  ADSANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEA 113
           A SA +K WE ELA LK NN +LT+AL ESTANV++WK+QL AY+EE ++L  +  ELE 
Sbjct: 187 ASSAISKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELEC 246

Query: 114 TKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLT----NAKHAVEDKCKAAVEL 169
              VS  A  +    T +    + L+  LK ++EE+++L     NA+   E +      L
Sbjct: 247 ---VSSQANAVHSHKTELNQTVQELEETLKVKEEEIERLKQEIDNARELQEQRDS----L 299

Query: 170 RKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLL 211
            ++L  V  +N+ L+ +L   ++ ++K  N + A     K L
Sbjct: 300 TQKLQEVEIRNKDLEGQLSDLEQRLEKSQNEQEAFRSNLKTL 341

Postsynaptic density scaffolding protein. Binds and cross-links cytoplasmic regions of GRM1, GRM5, ITPR1, DNM3, RYR1, RYR2, SHANK1 and SHANK3. By physically linking GRM1 and GRM5 with ER-associated ITPR1 receptors, it aids the coupling of surface receptors to intracellular calcium release. May also couple GRM1 to PI3 kinase through its interaction with AGAP2. Isoform 1 regulates the trafficking and surface expression of GRM5. Differentially regulates the functions of the calcium activated channel ryanodine receptors RYR1 and RYR2. Isoform 1 decreases the activity of RYR2, and increases the activity of RYR1, whereas isoform 5 counteracts the effects by competing for binding sites. Isoform 3 regulates the trafficking and surface expression of GRM5. Isoform 5 acts as a natural dominant negative, in dynamic competition with constitutively expressed isoform 1, isoform 2 and isoform 3 to regulate synaptic metabotropic glutamate function. Isoform 5, may be involved in the structural changes that occur at synapses during long-lasting neuronal plasticity and development.

Mus musculus (taxid: 10090)

>sp|Q2KJ56|HOME1_BOVIN Homer protein homolog 1 OS=Bos taurus GN=HOMER1 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 91/160 (56%), Gaps = 11/160 (6%)

Query: 56  SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
           SA +K WE ELA LK NN +LT+AL ESTANV++WK+QL AY+EE ++L  +  ELE   
Sbjct: 177 SAISKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELEC-- 234

Query: 116 GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLT----NAKHAVEDKCKAAVELRK 171
            VS  A  +    T +    + L+  LK ++EE+++L     NA+   E +      L +
Sbjct: 235 -VSSQANAVHTHKTELNQTIQELEETLKVKEEEIERLKQEIDNARELQEQRDS----LTQ 289

Query: 172 ELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLL 211
           +L  V  +N+ L+ +L   ++ ++K  N + A  +  K L
Sbjct: 290 KLQEVEIRNKDLEGQLSDLEQRLEKSQNEQEAFRNNLKTL 329

Postsynaptic density scaffolding protein. Binds and cross-links cytoplasmic regions of GRM1, GRM5, ITPR1, DNM3, RYR1, RYR2, SHANK1 and SHANK3. By physically linking GRM1 and GRM5 with ER-associated ITPR1 receptors, it aids the coupling of surface receptors to intracellular calcium release. May also couple GRM1 to PI3 kinase through its interaction with AGAP2.

Bos taurus (taxid: 9913)

>sp|Q9QWW1|HOME2_MOUSE Homer protein homolog 2 OS=Mus musculus GN=Homer2 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 66/100 (66%), Gaps = 9/100 (9%)

Query: 56  SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
           +AN KKWE+EL  L+ +N RLT+ALQES A+VE+WK+Q    ++EN +L++K  ELE   
Sbjct: 177 AANVKKWEMELQTLRESNARLTTALQESAASVEQWKRQFSICRDENDRLRSKIEELE--- 233

Query: 116 GVSEAAVELRKEL---TSVRSKNETLDSELKCRDEEVKKL 152
              E   E+ +E    T ++ + E L+SE++ ++ E+K L
Sbjct: 234 ---EQCSEINREKEKNTQLKRRIEELESEVRDKEMELKDL 270

Postsynaptic density scaffolding protein. Binds and cross-links cytoplasmic regions of GRM1, GRM5, ITPR1, DNM3, RYR1, RYR2, SHANK1 and SHANK3. By physically linking GRM1 and GRM5 with ER-associated ITPR1 receptors, it aids the coupling of surface receptors to intracellular calcium release. May also couple GRM1 to PI3 kinase through its interaction with AGAP2. Isoforms can be differently regulated and may play an important role in maintaining the plasticity at glutamatergic synapses.

Mus musculus (taxid: 10090)

>sp|Q86YM7|HOME1_HUMAN Homer protein homolog 1 OS=Homo sapiens GN=HOMER1 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 11/160 (6%)

Query: 56  SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
           SA +K WE ELA LK NN +LT+AL ESTANV++WK+QL AY+EE ++L  +  ELE   
Sbjct: 177 SAISKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVS 236

Query: 116 GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTS 175
             + A    + EL      N+T+    +    + +++   K  + D  +   E R  LT 
Sbjct: 237 SQANAVHTHKTEL------NQTIQELEETLKLKEEEIERLKQEI-DNARELQEQRDSLTQ 289

Query: 176 ----VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLL 211
               V  +N+ L+ +L   ++ ++K  N + A  +  K L
Sbjct: 290 KLQEVEIRNKDLEGQLSDLEQRLEKSQNEQEAFRNNLKTL 329

Postsynaptic density scaffolding protein. Binds and cross-links cytoplasmic regions of GRM1, GRM5, ITPR1, DNM3, RYR1, RYR2, SHANK1 and SHANK3. By physically linking GRM1 and GRM5 with ER-associated ITPR1 receptors, it aids the coupling of surface receptors to intracellular calcium release. May also couple GRM1 to PI3 kinase through its interaction with AGAP2. Isoform 1 regulates the trafficking and surface expression of GRM5. Isoform 3 acts as a natural dominant negative, in dynamic competition with constitutively expressed isoform 1 to regulate synaptic metabotropic glutamate function. Isoform 3, may be involved in the structural changes that occur at synapses during long-lasting neuronal plasticity and development.

Homo sapiens (taxid: 9606)

>sp|Q9NSC5|HOME3_HUMAN Homer protein homolog 3 OS=Homo sapiens GN=HOMER3 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 86/208 (41%), Gaps = 57/208 (27%)

Query: 1   MTFTKTSQKFGQWSDIRANTV---SLVQAQLDTLLA----------------SQDAQRRI 41
           MTFTKTSQKFGQW+D RANTV        Q  T  A                SQD     
Sbjct: 68  MTFTKTSQKFGQWADSRANTVYGLGFASEQHLTQFAEKFQEVKEAARLAREKSQDGGELT 127

Query: 42  IDTLN---HQLAGRVADSANAK----------------------------------KWEI 64
              L    HQ+      SAN                                    +WE 
Sbjct: 128 SPALGLASHQVPPSPLVSANGPGEEKLFRSQSADAPGPTERERLKKMLSEGSVGEVQWEA 187

Query: 65  ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVEL 124
           E   L+ +N +L  AL+E+ A   +W++QL+A + E ++L+ +  ELEA +  SE     
Sbjct: 188 EFFALQDSNNKLAGALREANAAAAQWRQQLEAQRAEAERLRQRVAELEA-QAASEVTPTG 246

Query: 125 RKELTSVRSKNETLDSELKCRDEEVKKL 152
            KE        E L++ ++ +D+E++ L
Sbjct: 247 EKEGLGQGQSLEQLEALVQTKDQEIQTL 274

Postsynaptic density scaffolding protein. Binds and cross-links cytoplasmic regions of GRM1, GRM5, ITPR1, DNM3, RYR1, RYR2, SHANK1 and SHANK3. By physically linking GRM1 and GRM5 with ER-associated ITPR1 receptors, it aids the coupling of surface receptors to intracellular calcium release. Isoforms can be differently regulated and may play an important role in maintaining the plasticity at glutamatergic synapses.

Homo sapiens (taxid: 9606)

>sp|Q99JP6|HOME3_MOUSE Homer protein homolog 3 OS=Mus musculus GN=Homer3 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 100/245 (40%), Gaps = 60/245 (24%)

Query: 1   MTFTKTSQKFGQWSDIRANT---VSLVQAQLDTLLA----------------SQDAQRRI 41
           MTFTKTSQKFGQW+D RANT   +     Q  T  A                SQD     
Sbjct: 68  MTFTKTSQKFGQWADSRANTVYGLGFASEQQLTQFAEKFQEVKEAARLAREKSQDGGEFT 127

Query: 42  IDTL---NHQLAGRVADSANAK----------------------------------KWEI 64
              L   +HQ+      S N                                    +WE 
Sbjct: 128 STGLALASHQVPPSPLVSTNGPGEEKLFRSQSADTPGPTERERLKKMLSEGSVGEVQWEA 187

Query: 65  ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVEL 124
           E   L+ +N RL  AL+E+ A   +W++QL+  + E + L+ +  ELEA   V E     
Sbjct: 188 EFFALQDSNQRLAGALREANAAATQWRQQLEVQRAEAELLRQRVAELEAQVAV-EPVRAG 246

Query: 125 RKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLD 184
            KE TS     E L++ ++ +D+ +K  +       D  +   E ++++  + ++N  L+
Sbjct: 247 EKEATS--QSVEQLEARVQTKDQTLKNQSTGTREAPDTAERE-ETQQQVQDLETRNAELE 303

Query: 185 SELKC 189
            +L+ 
Sbjct: 304 QQLRS 308

Postsynaptic density scaffolding protein. Binds and cross-links cytoplasmic regions of GRM1, GRM5, ITPR1, DNM3, RYR1, RYR2, SHANK1 and SHANK3. By physically linking GRM1 and GRM5 with ER-associated ITPR1 receptors, it aids the coupling of surface receptors to intracellular calcium release. Isoforms can be differently regulated and may play an important role in maintaining the plasticity at glutamatergic synapses.

Mus musculus (taxid: 10090)

>sp|Q9Z2X5|HOME3_RAT Homer protein homolog 3 OS=Rattus norvegicus GN=Homer3 PE=2 SV=2

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 5/131 (3%)

Query: 61  KWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEA 120
           +WE E   L+ +N RL  AL+E+ A   +W++QL+  + E + L+ +  ELEA +  +E 
Sbjct: 183 QWEAEFFALQDSNQRLAGALREANAAATQWRQQLEVQRAEAEHLRQRVAELEA-QVAAEP 241

Query: 121 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAA--VELRKELTSVRS 178
                KE TS     E L++ ++ +D+E++ L N      +    A   E ++++  + +
Sbjct: 242 VRAGEKEATS--QSVEQLEARVQTKDQEIQTLKNQSTGPREAPDTAEREETQQQVQDLET 299

Query: 179 KNETLDSELKC 189
           +N  L+ +L+ 
Sbjct: 300 RNAELEQQLRA 310

Postsynaptic density scaffolding protein. Binds and cross-links cytoplasmic regions of GRM1, GRM5, ITPR1, DNM3, RYR1, RYR2, SHANK1 and SHANK3. By physically linking GRM1 and GRM5 with ER-associated ITPR1 receptors, it aids the coupling of surface receptors to intracellular calcium release.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
328703533	411	PREDICTED: homer protein homolog 2-like	0.629	0.413	0.534	1e-52
242015127	397	homer, putative [Pediculus humanus corpo	0.577	0.392	0.511	2e-45
270010897	401	hypothetical protein TcasGA2_TC015941 [T	0.618	0.416	0.444	5e-35
332026256	422	Homer protein-like protein 2 [Acromyrmex	0.585	0.374	0.422	5e-31
383859919	423	PREDICTED: homer protein homolog 1-like	0.585	0.373	0.426	5e-31
322787973	434	hypothetical protein SINV_06262 [Solenop	0.596	0.370	0.418	1e-30
340710046	423	PREDICTED: homer protein homolog 1-like	0.585	0.373	0.408	2e-29
307189397	423	Homer protein-like protein 1 [Camponotus	0.585	0.373	0.412	3e-29
350413700	423	PREDICTED: homer protein homolog 3-like	0.585	0.373	0.403	6e-29
345485589	428	PREDICTED: homer protein homolog 1-like	0.596	0.376	0.404	6e-29

>gi|328703533|ref|XP_001950074.2| PREDICTED: homer protein homolog 2-like [Acyrthosiphon pisum]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/215 (53%), Positives = 144/215 (66%), Gaps = 45/215 (20%)

Query: 56  SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
           SANAKKWEIEL  LK+NNLRLT+ALQESTANV+EWK+QLQ+YKEENQ+LKT+Y++ E  K
Sbjct: 242 SANAKKWEIELQTLKNNNLRLTNALQESTANVDEWKRQLQSYKEENQRLKTRYLDAEVAK 301

Query: 116 GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTS 175
           G SE                                              A ELR ELTS
Sbjct: 302 GGSEV---------------------------------------------ASELRNELTS 316

Query: 176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLAS 235
           +R K E LD ELK ++EE++K+T  +  +E+KCK+LSQENAELQAA+SL QAQL+T LA+
Sbjct: 317 LRLKVENLDGELKSKNEEIQKMTMNRMPLEEKCKVLSQENAELQAAVSLAQAQLETALAA 376

Query: 236 QDAQRRIIDTLNHQLAGRVAELATIHREINTALQT 270
           Q++QRR+IDTLN+ L  R+ ELA IHRE+ TA+QT
Sbjct: 377 QESQRRVIDTLNNSLFVRIQELAAIHREMTTAIQT 411

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015127|ref|XP_002428225.1| homer, putative [Pediculus humanus corporis] gi|212512786|gb|EEB15487.1| homer, putative [Pediculus humanus corporis]

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/215 (51%), Positives = 134/215 (62%), Gaps = 59/215 (27%)

Query: 56  SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
           SANAKKWE+ELA LKSNN RLTSALQESTANVEEWK+QL AYKEEN +LKT Y+ LEA K
Sbjct: 242 SANAKKWEVELATLKSNNARLTSALQESTANVEEWKRQLHAYKEENLRLKTCYLGLEAAK 301

Query: 116 GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTS 175
                                                           +AA+ELRKELTS
Sbjct: 302 ------------------------------------------------EAAIELRKELTS 313

Query: 176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLAS 235
           +R + E L+ ELK +DEE+K+L+               EN+ELQ+A++L QAQL+T LA+
Sbjct: 314 LRQRVEQLELELKAKDEEIKRLSGK-----------GDENSELQSAVTLAQAQLETALAA 362

Query: 236 QDAQRRIIDTLNHQLAGRVAELATIHREINTALQT 270
           Q++QRR++DTLN QLA RVAELA IHRE+ TALQT
Sbjct: 363 QESQRRVLDTLNAQLAARVAELAGIHREVATALQT 397

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010897|gb|EFA07345.1| hypothetical protein TcasGA2_TC015941 [Tribolium castaneum]

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 125/216 (57%), Gaps = 49/216 (22%)

Query: 56  SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKY-IELEAT 114
           SANAKKWEIELA LKSNN RLTSALQESTANV+EWK+QL + KEEN ++K KY  +LE +
Sbjct: 234 SANAKKWEIELATLKSNNARLTSALQESTANVDEWKRQLASLKEENMRMKAKYQADLENS 293

Query: 115 KGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELT 174
           KG  + A ELR+E+ S+R + E +++EL  ++ E K+L   K +                
Sbjct: 294 KGGGDIADELRQEIQSLRIRLEQMEAELDAKNSEFKQLAFQKPS---------------- 337

Query: 175 SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLA 234
                                             + L +EN ELQA   L Q++LD  L+
Sbjct: 338 --------------------------------DIQALQKENQELQATAKLAQSELDIALS 365

Query: 235 SQDAQRRIIDTLNHQLAGRVAELATIHREINTALQT 270
           + ++QR+I+ TLN QLA RV ELATIH EI TALQT
Sbjct: 366 AHESQRQILLTLNSQLASRVQELATIHDEITTALQT 401

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026256|gb|EGI66395.1| Homer protein-like protein 2 [Acromyrmex echinatior]

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/218 (42%), Positives = 122/218 (55%), Gaps = 60/218 (27%)

Query: 56  SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
           SANAKKWE+EL  LK+NN RLTSALQESTANV+EWK+QLQ YKEEN K+K KY +LEA K
Sbjct: 262 SANAKKWEVELTTLKTNNARLTSALQESTANVDEWKRQLQLYKEENAKIKLKYADLEAGK 321

Query: 116 ---GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKE 172
              G SEA          +R + E L+SEL+ R+EE+K LT A                 
Sbjct: 322 IAEGNSEA----------LRLRVEALESELRTRNEEIKALTMA----------------- 354

Query: 173 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL 232
                +KN+                            +L +ENAEL+  +++V  QL+  
Sbjct: 355 -----TKNKDF-------------------------VVLQKENAELREMLNVVHEQLELA 384

Query: 233 LASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQT 270
           L++   Q++ +DTLN +LAG + +L T+HREI   LQT
Sbjct: 385 LSANKVQKQNLDTLNARLAGYIQDLVTVHREITNTLQT 422

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859919|ref|XP_003705439.1| PREDICTED: homer protein homolog 1-like [Megachile rotundata]

 Score =  140 bits (354), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/218 (42%), Positives = 121/218 (55%), Gaps = 60/218 (27%)

Query: 56  SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
           SANAKKWE+EL  LK+NN RLTSALQESTANV+EWK+QLQ YKEEN ++K KY +LEA K
Sbjct: 263 SANAKKWEVELTTLKTNNARLTSALQESTANVDEWKRQLQLYKEENARIKAKYADLEAGK 322

Query: 116 ---GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKE 172
              G SEA          +R + E L+SEL+ R+EE+K LT A      K K  V L+K 
Sbjct: 323 IAEGNSEA----------LRLRAEALESELRTRNEEIKALTMAT-----KNKDFVALQK- 366

Query: 173 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL 232
                                                    ENAEL+  + +V  QL+  
Sbjct: 367 -----------------------------------------ENAELREMLRVVHEQLELA 385

Query: 233 LASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQT 270
           L++   Q++ +DTLN +LAG + +L T+HREI + LQT
Sbjct: 386 LSANKVQKQNLDTLNARLAGYIQDLVTVHREITSTLQT 423

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787973|gb|EFZ13814.1| hypothetical protein SINV_06262 [Solenopsis invicta]

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/215 (41%), Positives = 123/215 (57%), Gaps = 54/215 (25%)

Query: 56  SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
           SANAKKWE+EL  LK+NN RLTSALQESTANV+EWK+QLQ YKEEN K+K KY +LEA K
Sbjct: 274 SANAKKWEVELTTLKTNNARLTSALQESTANVDEWKRQLQLYKEENAKIKLKYADLEAGK 333

Query: 116 GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTS 175
            ++E   E      ++R + E L+SEL+ R++E+K LT A                    
Sbjct: 334 -IAEGNCE------ALRLRVEALESELRTRNDEIKALTMA-------------------- 366

Query: 176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLAS 235
             SKN+   +                         L +ENAEL+  +++V  QL+  L++
Sbjct: 367 --SKNKDFVA-------------------------LQKENAELREMLNVVHEQLELALSA 399

Query: 236 QDAQRRIIDTLNHQLAGRVAELATIHREINTALQT 270
              Q++ +DTLN +LAG + +L T+HREI   LQT
Sbjct: 400 NKVQKQNLDTLNARLAGYIQDLVTVHREITNTLQT 434

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710046|ref|XP_003393609.1| PREDICTED: homer protein homolog 1-like [Bombus terrestris]

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/218 (40%), Positives = 120/218 (55%), Gaps = 60/218 (27%)

Query: 56  SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
           SANAKKWE+EL  LK+NN RLTSALQESTANV+EWK+QLQ YKE+N ++K KY +LEA K
Sbjct: 263 SANAKKWEVELTTLKTNNARLTSALQESTANVDEWKRQLQLYKEDNARIKAKYADLEAGK 322

Query: 116 ---GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKE 172
              G SEA          +R + E L+SEL+ ++EE+K LT     +  K K  V L+K 
Sbjct: 323 IAEGNSEA----------LRLRVEALESELRTKNEEIKALT-----IATKNKDFVALQK- 366

Query: 173 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL 232
                                                    ENAEL+  + +V  QL+  
Sbjct: 367 -----------------------------------------ENAELREMLRVVHEQLELA 385

Query: 233 LASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQT 270
           L++   Q++ +DTLN +LAG + +L T+HREI   LQ+
Sbjct: 386 LSANKVQKQNLDTLNARLAGYIQDLVTVHREITNTLQS 423

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189397|gb|EFN73807.1| Homer protein-like protein 1 [Camponotus floridanus]

 Score =  134 bits (338), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/218 (41%), Positives = 119/218 (54%), Gaps = 60/218 (27%)

Query: 56  SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
           SANAKKWEIEL  LK+NN RLTSALQESTANV+EWK+QLQ YK+EN K+K KY +LEA K
Sbjct: 263 SANAKKWEIELTTLKTNNARLTSALQESTANVDEWKRQLQLYKDENAKIKAKYADLEAGK 322

Query: 116 ---GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKE 172
              G SEA          +R + E L+ EL+ R++E+K LT A      K K  V L+KE
Sbjct: 323 IAEGNSEA----------LRLRVEALECELRTRNDEIKALTMAT-----KGKDLVALQKE 367

Query: 173 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL 232
                                                     N E++  +++V  QL+  
Sbjct: 368 ------------------------------------------NTEIREMLNVVHEQLELA 385

Query: 233 LASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQT 270
           L++   Q++ +DTLN +LAG + +L T+HREI   LQT
Sbjct: 386 LSANKVQKQNLDTLNARLAGYIQDLVTVHREITNTLQT 423

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413700|ref|XP_003490078.1| PREDICTED: homer protein homolog 3-like [Bombus impatiens]

 Score =  134 bits (336), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/218 (40%), Positives = 119/218 (54%), Gaps = 60/218 (27%)

Query: 56  SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
           SANAKKWE+EL  LK+NN RLTSALQESTANV+EWK+QLQ YKE+N ++K KY +LEA K
Sbjct: 263 SANAKKWEVELTTLKTNNARLTSALQESTANVDEWKRQLQLYKEDNARIKAKYADLEAGK 322

Query: 116 ---GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKE 172
              G SEA          +R + E L+SEL+ ++EE+K LT     +  K K  V L+K 
Sbjct: 323 IAEGNSEA----------LRLRVEALESELRTKNEEIKALT-----IATKNKDFVALQK- 366

Query: 173 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL 232
                                                    ENAE +  +  V  QL+  
Sbjct: 367 -----------------------------------------ENAEFREMLRAVHEQLELA 385

Query: 233 LASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQT 270
           L++ + Q++ ++TLN +LAG + +L T+HREI   LQT
Sbjct: 386 LSANNVQKQNLNTLNARLAGYIQDLVTVHREITNTLQT 423

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485589|ref|XP_001606992.2| PREDICTED: homer protein homolog 1-like [Nasonia vitripennis]

 Score =  133 bits (335), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/215 (40%), Positives = 122/215 (56%), Gaps = 54/215 (25%)

Query: 56  SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
           SANAKKWEIEL  LK+NN RLTSALQESTANV+EWKKQLQ  KEEN ++K KY +LEA K
Sbjct: 268 SANAKKWEIELTTLKTNNARLTSALQESTANVDEWKKQLQLLKEENARVKAKYADLEAGK 327

Query: 116 GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTS 175
            ++E   E      ++R + E L++EL+ R+EE+K LT A                    
Sbjct: 328 -IAEGNCE------ALRLRVEALENELRTRNEEIKALTMA-------------------- 360

Query: 176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLAS 235
             SKN+   +                         L +ENA+L+  +++V  QLD  +++
Sbjct: 361 --SKNKDYAT-------------------------LQKENADLREMLNVVHEQLDISMST 393

Query: 236 QDAQRRIIDTLNHQLAGRVAELATIHREINTALQT 270
              Q++ ++T+N +LAG + +L T+HREI   LQT
Sbjct: 394 NKVQKQNLETVNMRLAGYIQDLVTVHREITNTLQT 428

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
FB|FBgn0025777	459	homer "homer" [Drosophila mela	0.644	0.379	0.413	5.5e-33
ZFIN|ZDB-GENE-040801-44	398	homer1b "homer homolog 1b (Dro	0.629	0.427	0.320	1.5e-25
MGI|MGI:1347345	366	Homer1 "homer homolog 1 (Droso	0.574	0.423	0.354	1.4e-20
UNIPROTKB|Q2KJ56	354	HOMER1 "Homer protein homolog	0.566	0.432	0.352	3.5e-20
UNIPROTKB|E2RT37	354	HOMER1 "Uncharacterized protei	0.566	0.432	0.352	3.5e-20
UNIPROTKB|Q86YM7	354	HOMER1 "Homer protein homolog	0.566	0.432	0.352	3.5e-20
RGD|628725	366	Homer1 "homer homolog 1 (Droso	0.574	0.423	0.348	1.3e-19
UNIPROTKB|F1NBG3	368	HOMER1 "Uncharacterized protei	0.566	0.415	0.352	1.4e-19
UNIPROTKB|F1N9M6	361	HOMER2 "Uncharacterized protei	0.777	0.581	0.315	1e-18
UNIPROTKB|F1RIA0	343	HOMER2 "Uncharacterized protei	0.511	0.402	0.340	4.7e-18

FB|FBgn0025777 homer "homer" [Drosophila melanogaster (taxid:7227)]

 Score = 277 (102.6 bits), Expect = 5.5e-33, Sum P(2) = 5.5e-33
 Identities = 76/184 (41%), Positives = 107/184 (58%)

Query:    46 NHQLAGRVADS-ANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKL 104
             N +L   +A S ANAKKWEIELA LK+NN+RLTSALQESTANV+EWK+QL  YKEEN +L
Sbjct:   234 NERLKMALAQSCANAKKWEIELATLKNNNIRLTSALQESTANVDEWKRQLHTYKEENIRL 293

Query:   105 KTKYIELEATKGVSEAAV------ELRKELTSVRSKNETLDSELKCRDEEVKKLT-NAKH 157
             K    +L    GV  AA       ELR+E+ +++++ E L  EL  ++ E+K    + + 
Sbjct:   294 KRDMEQLCVGGGVVAAAGGGATEDELRREVATLKARTEQLQKELMQQELELKSANISLRE 353

Query:   158 AVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE 217
                D+  A +    E  S  S   ++ ++L+    E + +   K A+ DK   L QE  +
Sbjct:   354 KSNDQTLAKLSEVNEAESTLSNVTSIHTQLQSSLYETQNMPQLK-AL-DKHSALLQELHQ 411

Query:   218 LQAA 221
              QAA
Sbjct:   412 RQAA 415

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030534 "adult behavior" evidence=IMP

GO:0040012 "regulation of locomotion" evidence=IMP

GO:0045471 "response to ethanol" evidence=IDA

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0045938 "positive regulation of circadian sleep/wake cycle, sleep" evidence=IMP

ZFIN|ZDB-GENE-040801-44 homer1b "homer homolog 1b (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 1.5e-25, Sum P(2) = 1.5e-25
 Identities = 60/187 (32%), Positives = 109/187 (58%)

Query:    60 KKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSE 119
             K WE ELA LKSNN +LT+AL ESTANV++WK+QL AY+EE ++L  +  ELE+    S+
Sbjct:   225 KHWEAELAALKSNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVSELESQS--SQ 282

Query:   120 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSK 179
               V ++ + T +    E L+  L+ ++EE+ +L   K  VE+    A +L+ +   +  K
Sbjct:   283 TNV-IKSQKTELNQTIEELECTLRAKEEEMMRL---KEEVEN----AKQLQAQKDELTKK 334

Query:   180 NETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE--LQAAISLVQAQLDTLLASQD 237
              E  D++++ ++ E ++L++ +  +E     + QEN    L+  + ++  ++  L   +D
Sbjct:   335 LE--DTDMRNKELE-EQLSDLEQRLESS--QVDQENLRKNLKTLLEILDGKIFELTELRD 389

Query:   238 AQRRIID 244
                ++I+
Sbjct:   390 NLAKLIE 396

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1347345 Homer1 "homer homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 243 (90.6 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 56/158 (35%), Positives = 88/158 (55%)

Query:    54 ADSANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEA 113
             A SA +K WE ELA LK NN +LT+AL ESTANV++WK+QL AY+EE ++L  +  ELE 
Sbjct:   187 ASSAISKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELEC 246

Query:   114 TKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKEL 173
                VS  A  +    T +    + L+  LK ++EE+++L        +  +    L ++L
Sbjct:   247 ---VSSQANAVHSHKTELNQTVQELEETLKVKEEEIERLKQEIDNARELQEQRDSLTQKL 303

Query:   174 TSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLL 211
               V  +N+ L+ +L   ++ ++K  N + A     K L
Sbjct:   304 QEVEIRNKDLEGQLSDLEQRLEKSQNEQEAFRSNLKTL 341

GO:0003009 "skeletal muscle contraction" evidence=IMP

GO:0005102 "receptor binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007216 "G-protein coupled glutamate receptor signaling pathway" evidence=ISO;TAS

GO:0014069 "postsynaptic density" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0030425 "dendrite" evidence=ISO

GO:0031802 "type 5 metabotropic glutamate receptor binding" evidence=ISO

GO:0032947 "protein complex scaffold" evidence=ISO

GO:0035256 "G-protein coupled glutamate receptor binding" evidence=ISO

GO:0035418 "protein localization to synapse" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO;IDA

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043034 "costamere" evidence=IDA

GO:0043198 "dendritic shaft" evidence=ISO

GO:0044325 "ion channel binding" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0045202 "synapse" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0048148 "behavioral response to cocaine" evidence=IMP

GO:0048741 "skeletal muscle fiber development" evidence=IMP

GO:0048875 "chemical homeostasis within a tissue" evidence=IMP

GO:0051592 "response to calcium ion" evidence=ISO

GO:0051928 "positive regulation of calcium ion transport" evidence=IMP

GO:0060076 "excitatory synapse" evidence=ISO

GO:0090279 "regulation of calcium ion import" evidence=IMP

GO:0097110 "scaffold protein binding" evidence=ISO

GO:2001256 "regulation of store-operated calcium entry" evidence=IMP

GO:2001257 "regulation of cation channel activity" evidence=IMP

UNIPROTKB|Q2KJ56 HOMER1 "Homer protein homolog 1" [Bos taurus (taxid:9913)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 55/156 (35%), Positives = 88/156 (56%)

Query:    56 SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
             SA +K WE ELA LK NN +LT+AL ESTANV++WK+QL AY+EE ++L  +  ELE   
Sbjct:   177 SAISKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELEC-- 234

Query:   116 GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTS 175
              VS  A  +    T +    + L+  LK ++EE+++L        +  +    L ++L  
Sbjct:   235 -VSSQANAVHTHKTELNQTIQELEETLKVKEEEIERLKQEIDNARELQEQRDSLTQKLQE 293

Query:   176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLL 211
             V  +N+ L+ +L   ++ ++K  N + A  +  K L
Sbjct:   294 VEIRNKDLEGQLSDLEQRLEKSQNEQEAFRNNLKTL 329

GO:0014069 "postsynaptic density" evidence=IEA

GO:2001257 "regulation of cation channel activity" evidence=IEA

GO:2001256 "regulation of store-operated calcium entry" evidence=IEA

GO:0090279 "regulation of calcium ion import" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0048875 "chemical homeostasis within a tissue" evidence=IEA

GO:0048741 "skeletal muscle fiber development" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0043034 "costamere" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0003009 "skeletal muscle contraction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

UNIPROTKB|E2RT37 HOMER1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 55/156 (35%), Positives = 88/156 (56%)

Query:    56 SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
             SA +K WE ELA LK NN +LT+AL ESTANV++WK+QL AY+EE ++L  +  ELE   
Sbjct:   177 SAISKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELEC-- 234

Query:   116 GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTS 175
              VS  A  +    T +    + L+  LK ++EE+++L        +  +    L ++L  
Sbjct:   235 -VSSQANAVHTHKTELNQTIQELEETLKVKEEEIERLKQEIDNARELQEQRDSLTQKLQE 293

Query:   176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLL 211
             V  +N+ L+ +L   ++ ++K  N + A  +  K L
Sbjct:   294 VEIRNKDLEGQLSDLEQRLEKSQNEQEAFRNNLKTL 329

GO:2001257 "regulation of cation channel activity" evidence=IEA

GO:2001256 "regulation of store-operated calcium entry" evidence=IEA

GO:0090279 "regulation of calcium ion import" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0048875 "chemical homeostasis within a tissue" evidence=IEA

GO:0048741 "skeletal muscle fiber development" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0043034 "costamere" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0003009 "skeletal muscle contraction" evidence=IEA

UNIPROTKB|Q86YM7 HOMER1 "Homer protein homolog 1" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 55/156 (35%), Positives = 88/156 (56%)

Query:    56 SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
             SA +K WE ELA LK NN +LT+AL ESTANV++WK+QL AY+EE ++L  +  ELE   
Sbjct:   177 SAISKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELEC-- 234

Query:   116 GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTS 175
              VS  A  +    T +    + L+  LK ++EE+++L        +  +    L ++L  
Sbjct:   235 -VSSQANAVHTHKTELNQTIQELEETLKLKEEEIERLKQEIDNARELQEQRDSLTQKLQE 293

Query:   176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLL 211
             V  +N+ L+ +L   ++ ++K  N + A  +  K L
Sbjct:   294 VEIRNKDLEGQLSDLEQRLEKSQNEQEAFRNNLKTL 329

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0003009 "skeletal muscle contraction" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0031802 "type 5 metabotropic glutamate receptor binding" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0035094 "response to nicotine" evidence=IEA

GO:0035418 "protein localization to synapse" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043034 "costamere" evidence=IEA

GO:0043198 "dendritic shaft" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0048741 "skeletal muscle fiber development" evidence=IEA

GO:0048875 "chemical homeostasis within a tissue" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0090279 "regulation of calcium ion import" evidence=IEA

GO:0097110 "scaffold protein binding" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007206 "phospholipase C-activating G-protein coupled glutamate receptor signaling pathway" evidence=TAS

GO:0044325 "ion channel binding" evidence=IPI

GO:0035591 "signaling adaptor activity" evidence=IC

GO:0009967 "positive regulation of signal transduction" evidence=IC

GO:0051592 "response to calcium ion" evidence=IDA

GO:2001257 "regulation of cation channel activity" evidence=TAS

GO:2001256 "regulation of store-operated calcium entry" evidence=TAS

RGD|628725 Homer1 "homer homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 235 (87.8 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 55/158 (34%), Positives = 88/158 (55%)

Query:    54 ADSANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEA 113
             A SA +K WE ELA LK NN +LT+AL ESTANV++WK+QL AY+EE ++L  +  ELE 
Sbjct:   187 ASSAISKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELEC 246

Query:   114 TKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKEL 173
                VS  A  +    T +    + L+  LK ++EE+++L        +  +    L ++L
Sbjct:   247 ---VSSQANAVHSHKTELSQTVQELEETLKVKEEEIERLKQEIDNARELQEQRDSLTQKL 303

Query:   174 TSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLL 211
               V  +N+ L+ +L   ++ ++K  + + A     K L
Sbjct:   304 QEVEIRNKDLEGQLSELEQRLEKSQSEQDAFRSNLKTL 341

GO:0003009 "skeletal muscle contraction" evidence=IEA;ISO

GO:0005102 "receptor binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006950 "response to stress" evidence=IEP

GO:0007216 "G-protein coupled glutamate receptor signaling pathway" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0014069 "postsynaptic density" evidence=ISO;IDA

GO:0016020 "membrane" evidence=ISO

GO:0030018 "Z disc" evidence=IEA;ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030425 "dendrite" evidence=IDA

GO:0031802 "type 5 metabotropic glutamate receptor binding" evidence=IPI

GO:0032947 "protein complex scaffold" evidence=IPI

GO:0035094 "response to nicotine" evidence=IEP

GO:0035256 "G-protein coupled glutamate receptor binding" evidence=IPI

GO:0035418 "protein localization to synapse" evidence=IDA

GO:0042220 "response to cocaine" evidence=IEP

GO:0042802 "identical protein binding" evidence=IPI

GO:0043005 "neuron projection" evidence=ISO;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043034 "costamere" evidence=IEA;ISO

GO:0043198 "dendritic shaft" evidence=IDA

GO:0044325 "ion channel binding" evidence=IEA;ISO

GO:0045177 "apical part of cell" evidence=IEA;ISO

GO:0045202 "synapse" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048148 "behavioral response to cocaine" evidence=IEA;ISO

GO:0048741 "skeletal muscle fiber development" evidence=IEA;ISO

GO:0048875 "chemical homeostasis within a tissue" evidence=IEA;ISO

GO:0051592 "response to calcium ion" evidence=IEA;ISO

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA;ISO

GO:0090279 "regulation of calcium ion import" evidence=IEA;ISO

GO:0097110 "scaffold protein binding" evidence=IPI

GO:2001256 "regulation of store-operated calcium entry" evidence=IEA;ISO

GO:2001257 "regulation of cation channel activity" evidence=IEA;ISO

GO:0060076 "excitatory synapse" evidence=IDA

UNIPROTKB|F1NBG3 HOMER1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 235 (87.8 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 55/156 (35%), Positives = 87/156 (55%)

Query:    56 SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
             S  +K WE ELA LK NN +LT+AL ESTANV++WK+QL AY+EE ++L  +  ELE   
Sbjct:   191 STISKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELEC-- 248

Query:   116 GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTS 175
              VS  A  +    T +    + L+S LK ++EE+++L        +       L ++L  
Sbjct:   249 -VSSQANAVHTHKTELNQTIQELESTLKKKEEEIERLKQEIDNARELQAQRDSLTQKLQE 307

Query:   176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLL 211
             V  +N+ L+ +L   ++ ++K  N + A  +  K L
Sbjct:   308 VEIRNKDLEGQLSDLEQRLEKSQNEQEAFRNNLKTL 343

GO:0003009 "skeletal muscle contraction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0043034 "costamere" evidence=IEA

GO:0044325 "ion channel binding" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0048741 "skeletal muscle fiber development" evidence=IEA

GO:0048875 "chemical homeostasis within a tissue" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0051928 "positive regulation of calcium ion transport" evidence=IEA

GO:0090279 "regulation of calcium ion import" evidence=IEA

GO:2001256 "regulation of store-operated calcium entry" evidence=IEA

GO:2001257 "regulation of cation channel activity" evidence=IEA

UNIPROTKB|F1N9M6 HOMER2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 227 (85.0 bits), Expect = 1.0e-18, P = 1.0e-18
 Identities = 71/225 (31%), Positives = 122/225 (54%)

Query:     2 TFTKTSQKFGQW--SDIRANTVSLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVADSA-N 58
             T +  SQ+ G+   S  RA++V+    +  +   S +AQ   + + N +L   +A S+ N
Sbjct:   130 TSSNHSQESGRETPSSTRASSVNGTDDEKASHGGSAEAQ---LKSENDKLKIALAQSSSN 186

Query:    59 AKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVS 118
              KKWE EL  L+ +N RLT+ALQES A++E WKKQ  A KEEN +L++K  ELE  +  +
Sbjct:   187 VKKWETELQTLRESNARLTTALQESAASIEHWKKQFSACKEENDQLRSKIEELE--EQCN 244

Query:   119 EAAVELRKELTSVRSKN-ETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVR 177
             E  +   KE  +  S+  + L++EL+ ++ E+++L      +         + ++L    
Sbjct:   245 E--INKEKERNAQLSRRLQELETELQDKELELEELRKQGEVIPQLMSECESVSQQLQDAE 302

Query:   178 SKNETLDSE---LKCRDEEVK-KLTNAKHAVEDKCKLLSQENAEL 218
             +KN+ L+ +   L+   EE K + TN K  +++   +L  +  EL
Sbjct:   303 NKNKDLEEKVRTLRTEVEESKHRQTNLKTELKNFLDVLDGKIDEL 347

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0030160 "GKAP/Homer scaffold activity" evidence=IEA

GO:0035584 "calcium-mediated signaling using intracellular calcium source" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0048875 "chemical homeostasis within a tissue" evidence=IEA

UNIPROTKB|F1RIA0 HOMER2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 220 (82.5 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 48/141 (34%), Positives = 82/141 (58%)

Query:    56 SANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATK 115
             +AN KKWEIEL  L+ +N RLT+ALQES A+VE+WK+Q    ++EN +L+ K  ELE  +
Sbjct:   166 AANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELE--E 223

Query:   116 GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTS 175
               SE   E  K  T ++ + E L+SEL+ ++ E+K L      +         + ++L +
Sbjct:   224 QCSEINREKEKN-TQLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEA 282

Query:   176 VRSKNETLDSELKCRDEEVKK 196
                 N+ L+ +++    ++++
Sbjct:   283 AERDNQNLEDKVRSLKTDIEE 303

GO:0048875 "chemical homeostasis within a tissue" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0035584 "calcium-mediated signaling using intracellular calcium source" evidence=IEA

GO:0030160 "GKAP/Homer scaffold activity" evidence=IEA

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	270
cd01206	109	cd01206, EVH1_Homer_Vesl, Homer/Vesl family protei	7e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
pfam05622	713	pfam05622, HOOK, HOOK protein	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	0.002
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.002
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.002

>gnl|CDD|241242 cd01206, EVH1_Homer_Vesl, Homer/Vesl family proteins EVH1 domain

 Score = 57.7 bits (140), Expect = 7e-11
 Identities = 19/21 (90%), Positives = 20/21 (95%)

Query: 1  MTFTKTSQKFGQWSDIRANTV 21
          MTFTKTSQKFGQW+D RANTV
Sbjct: 63 MTFTKTSQKFGQWADSRANTV 83

Homer/Vesl proteins are synaptic scaffolding proteins, required for long-term potentiation, a form of synaptic plasticity thought to underlie memory formation. They contains an N-terminal EVH1 domain and bind to both neurotransmitter receptors, such as the metabotropic group 1 glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. These mGluRs possess a long C-terminal intracellular tail that may be important for subcellular localization of the receptor. The C-terminus is also the site of binding by the immediate early gene (IEG), Homer 1a. In contrast to Homer 1a, other Homer members additionally encode a C-terminal coiled-coil (CC) domain and form multivalent complexes that bind group 1 mGluRs. Homer 1a competes with constitutively expressed CC-Homers to modify the association of group 1 mGluRs with CC-Homer complexes. Since Homer proteins are strikingly enriched at the postsynaptic density (PSD), these observations suggest a role for the Homer family in regulating synaptic metabotropic receptor function. PSD-Zip45 (also named Homer 1c/Vesl-1L) has an EVH1 domain with a longer alpha-helix and its linking part included in the conserved region of Homer 1 (CRH1) interacts with the EVH1 domain of the neighbour CRH1 molecule in the crystal, suggesting that the EVH1 domain recognizes the PPXXF motif found in the binding partners, and the SPLTP sequence (P-motif) in the linking region of the CRH1. The two types of binding are partly overlapped in the EVH1 domain, implying a mechanism to regulate multimerization of Homer 1 family proteins. Homer 2 and Homer 3 are negative regulators of T cell activation. They bind the nuclear factor of activated T cells (NFAT) and compete with calcineurin binding. NFAT plays a critical role in calcium-dependent signaling in other cell types, including muscle and neurons. Homer-NFAT binding is also antagonized by active serine-threonine kinase AKT, enhancing TCR signaling via calcineurin-dependent dephosphorylation of NFAT resulting in changes in cytokine expression and an increase in effector-memory T cell populations in Homer-deficient mice. The EVH1 domains are part of the PH domain superamily. There are 5 EVH1 subfamilies: Enables/VASP, Homer/Vesl, WASP, Dcp1, and Spred. Ligands are known for three of the EVH1 subfamilies, all of which bind proline-rich sequences: the Enabled/VASP family binds to FPPPP peptides, the Homer/Vesl family binds PPxxF peptides, and the WASP family binds LPPPEP peptides. EVH1 has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains. Length = 109

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 53/246 (21%), Positives = 100/246 (40%), Gaps = 9/246 (3%)

Query: 25  QAQLDTLLASQDAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNNLRLTSALQEST 84
           + +L+ L          ++ L  +L          +    E++ L+     L   L    
Sbjct: 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRL---EVSELEEEIEELQKELYALA 294

Query: 85  ANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAA-VELRKELTSVRSKNETLDSELK 143
             +   ++Q Q  +E    L+ +  ELEA     E+   EL +EL  +  K E L    +
Sbjct: 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL---KE 351

Query: 144 CRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA 203
             +    +L   +  +E+      EL ++L ++RSK   L+ ++   + E+++L      
Sbjct: 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411

Query: 204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHRE 263
           +ED+ + L QE  EL     L +A+L  L A  +     ++ L  +L      L  +  E
Sbjct: 412 LEDRRERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469

Query: 264 INTALQ 269
           +  A Q
Sbjct: 470 LEEAEQ 475

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 21/226 (9%)

Query: 24  VQAQLDTLLASQDAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNNLRLTSALQES 83
           V+ ++  L A   +  R I     +L          +  E  LA L++   +L + ++E 
Sbjct: 292 VKEKIGELEAEIASLERSIAEKEREL----------EDAEERLAKLEAEIDKLLAEIEEL 341

Query: 84  TANVEEWKKQLQAYKEENQKLKTKYIELEATKG-VSEAAVELRKELTSVRSKNETLDSEL 142
              +EE +K+     EE  +LK +  +L A    V +   E R EL   R K E L  E+
Sbjct: 342 EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401

Query: 143 KCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLT-NAK 201
                E+ +L       +   +   +L   +  + +K   L+ E + +  E+KK     +
Sbjct: 402 NELKRELDRLQEEL---QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458

Query: 202 HAVEDKCKL------LSQENAELQAAISLVQAQLDTLLASQDAQRR 241
               D  K       L +E   ++  +S +Q +L    A   A   
Sbjct: 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 15/203 (7%)

Query: 63  EIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAV 122
           E E++ L+     L + L+E    +EE K++++A KEE ++ +T   ELE      E A 
Sbjct: 301 EGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAK 360

Query: 123 E-----LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVR 177
           E     L   L  +    E L  EL   + E+ ++ N             EL++E+ S+ 
Sbjct: 361 EELEEKLSALLEELEELFEALREELAELEAELAEIRNELE----------ELKREIESLE 410

Query: 178 SKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQD 237
            + E L   L+   EE+K+L      ++ + + L++E  EL+  +  ++ +L  L     
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470

Query: 238 AQRRIIDTLNHQLAGRVAELATI 260
             +  +  L  +L+   A L  +
Sbjct: 471 ELQEELQRLEKELSSLEARLDRL 493

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 54/255 (21%), Positives = 122/255 (47%), Gaps = 18/255 (7%)

Query: 28  LDTLLASQDAQRRIIDTLNHQLAGRVAD-SANAKKWEIELANLKSNNLRLTSALQESTAN 86
           L   L+S  ++ R I+    +L+  ++D S    + E E+  L+    +L   L+E   +
Sbjct: 686 LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED 745

Query: 87  VEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAV-------------ELRKELTSVRS 133
           +   +++++  K E ++L+ +  ELE      E A+             E++ EL+ +  
Sbjct: 746 LSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEE 805

Query: 134 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELT----SVRSKNETLDSELKC 189
           +   +++ L+  ++++ +LT  K  +E + +   E R +L     S+  + E L+ + + 
Sbjct: 806 EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEE 865

Query: 190 RDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQ 249
            +EE+++L  A   +E +   L +E  EL+A +  ++ +++ L A  + +R+ +  L  +
Sbjct: 866 LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925

Query: 250 LAGRVAELATIHREI 264
           L     EL+ I    
Sbjct: 926 LEALEEELSEIEDPK 940

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 6/194 (3%)

Query: 72  NNLRLTSA-LQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTS 130
             L  T   L      + E ++QL++ + + +K + +Y EL+A     E A+ L   L  
Sbjct: 179 RKLERTRENLDRLEDILNELERQLKSLERQAEKAE-RYKELKAELRELELAL-LVLRLEE 236

Query: 131 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCR 190
           +R + E L  ELK  +EE+++LT     +E+K     ELR E++ +  + E L  EL   
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEK---LEELRLEVSELEEEIEELQKELYAL 293

Query: 191 DEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL 250
             E+ +L   K  + ++   L ++  EL+A +  ++++LD L          ++ L  +L
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353

Query: 251 AGRVAELATIHREI 264
               AEL  +  E+
Sbjct: 354 ESLEAELEELEAEL 367

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 54/246 (21%), Positives = 103/246 (41%), Gaps = 21/246 (8%)

Query: 24  VQAQLDTLLASQDAQRRIIDTLNHQLAGRVADSANA-----KKWEIELANLKSNNLRLTS 78
           ++ QL +L    +     I  L  +L                  E E   +K     L +
Sbjct: 242 IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEA 301

Query: 79  ALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETL 138
            +     ++ E +++L+  +E   KL+ +  +L A         EL +E+   R + + L
Sbjct: 302 EIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE------ELEREIEEERKRRDKL 355

Query: 139 DSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLT 198
             E     EE++ L      +E+  K   E R EL   R K E L  E+     E+ +L 
Sbjct: 356 TEEYAELKEELEDLRA---ELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL- 411

Query: 199 NAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELA 258
                 +++ + LS+E A+L AAI+ ++A+++ L   ++ +   I     +L    A+L+
Sbjct: 412 ------QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465

Query: 259 TIHREI 264
              +E+
Sbjct: 466 KYEQEL 471

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 7/180 (3%)

Query: 87  VEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVE-LRKELTSVRSKNETLDSELKCR 145
           ++E +K+L+  +EE  +L+ +  EL+     +E  +E L+ EL  +R + E L  EL   
Sbjct: 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293

Query: 146 DEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 205
            EE+++L      + ++ +   EL  EL  +  + E L  +++   EE+++       +E
Sbjct: 294 KEEIEELEGEISLLRERLE---ELENELEELEERLEELKEKIEALKEELEERETLLEELE 350

Query: 206 DKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREIN 265
                L +   EL+  +S +  +L+ L     A R  +  L  +LA    EL  + REI 
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFE---ALREELAELEAELAEIRNELEELKREIE 407

Length = 1163

>gnl|CDD|218661 pfam05622, HOOK, HOOK protein

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 8/188 (4%)

Query: 63  EIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAV 122
           E ELA L+  N  LTS   ES A     K ++   +E + K K    ++E  K   E   
Sbjct: 273 EKELAELQHRNDELTSLAAESQA----LKDEIDVLRESSDKAKKLEAQVETYKKKLEDLN 328

Query: 123 ELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNET 182
           +LR+++  +  +N          +EE+KK   A+  +E   +   EL  +L+    K + 
Sbjct: 329 DLRRQVKLLEERNAMYMQNTVQLEEELKKANAARGQLETYKRQVQELHAKLSEESKKADK 388

Query: 183 LDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRI 242
           L+ E K  +E+++ L   K  +  +   L + N EL+      QAQ D L  +       
Sbjct: 389 LEFEYKRLEEKLEALQKEKERLLAERDSLRETNEELRCG----QAQQDQLTQADAGTSPS 444

Query: 243 IDTLNHQL 250
            D L  +L
Sbjct: 445 GDNLAAEL 452

This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. Length = 713

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 43/242 (17%), Positives = 101/242 (41%), Gaps = 9/242 (3%)

Query: 37  AQRRIIDTLNHQLAGRVADSANAKK----WEIELANLKSNNLRLTSALQESTANVEEWKK 92
            +RR I+ L  ++       A  +K       EL  L+    +L   L+E +  +   +K
Sbjct: 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733

Query: 93  QLQAYKEENQKLKTKYIELEATKGVSEA-AVELRKELTSVRSKNETLDSELKCRDEEVKK 151
            L   + E ++L+ +  +L       EA   EL + L     +    ++E++  + ++++
Sbjct: 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793

Query: 152 LTNAKHAVEDKCKAA----VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK 207
           L     A+ +           L +E  ++R + E+L+  +   +  ++ L      + + 
Sbjct: 794 LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853

Query: 208 CKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA 267
            + L+ E  EL+  I  ++++L+ LL  + +    +  L  +L     EL  +  + +  
Sbjct: 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL 913

Query: 268 LQ 269
            +
Sbjct: 914 RR 915

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)

Query: 60  KKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSE 119
           KK + EL   + N   L + +   T+     K  L   K+EN  L+TK   + + K    
Sbjct: 416 KKLQAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAK---- 471

Query: 120 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA-KHAVEDKCKAAVELRKELTSVRS 178
                +K+  S++S  + L SE   R    K+L    K   E++  AA    +   S   
Sbjct: 472 -----QKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAASREE 526

Query: 179 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQ 219
             E+L    +  + E+KKL +     E++C++L +E  EL+
Sbjct: 527 CAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQELR 567

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 36/184 (19%), Positives = 74/184 (40%), Gaps = 15/184 (8%)

Query: 87  VEEWKKQLQAYKEENQKLKTKYIELEAT-KGVSEAAVELRKELTSVRSKNETLDSELKCR 145
           V ++       +E  Q+ +       A  K   E  V+   EL   +       + LK  
Sbjct: 595 VPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQA 654

Query: 146 DEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE 205
             ++++L N + +++DK + A+  RK+     ++   LD++LK   E+ +     +   +
Sbjct: 655 RLDLQRLQNEQQSLKDKLELAIAERKQ--QAETQLRQLDAQLKQLLEQQQAF--LEALKD 710

Query: 206 DKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREIN 265
           D  +L ++  A+ Q     +  QL  L A+ +A R              A L  + ++ +
Sbjct: 711 DFRELRTERLAKWQVVEGELDNQLAQLSAAIEAAR----------TQAKARLKELKKQYD 760

Query: 266 TALQ 269
             L 
Sbjct: 761 RELA 764

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 65  ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVEL 124
           ELA L+     L   L E     +E K++L   + E ++L+    EL   K +S  A+EL
Sbjct: 74  ELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQK---ELARIKQLSANAIEL 130

Query: 125 RKELTSVRSKNETLDSEL 142
            +E   +R +   L  E 
Sbjct: 131 DEENRELREELAELKQEN 148

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
cd01206	111	Homer Homer type EVH1 domain. Homer type EVH1 doma	99.27
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.64
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.55
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.48
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.46
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.35
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.34
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.34
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	98.32
PF14662	193	CCDC155: Coiled-coil region of CCDC155	98.19
PRK02224	880	chromosome segregation protein; Provisional	98.16
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	98.12
KOG0933|consensus	1174		98.09
KOG0996|consensus	1293		98.08
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.06
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	98.04
PHA02562	562	46 endonuclease subunit; Provisional	98.02
KOG0161|consensus	1930		98.01
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.97
PHA02562	562	46 endonuclease subunit; Provisional	97.97
KOG0250|consensus	1074		97.96
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.94
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.92
KOG0996|consensus	1293		97.91
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.87
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.85
KOG0161|consensus	1930		97.85
KOG0250|consensus	1074		97.84
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.84
KOG0995|consensus	581		97.81
PRK09039	343	hypothetical protein; Validated	97.77
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.73
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	97.71
PRK03918	880	chromosome segregation protein; Provisional	97.7
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	97.7
PRK03918	880	chromosome segregation protein; Provisional	97.68
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	97.66
KOG4643|consensus	1195		97.5
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.49
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.48
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.41
KOG0977|consensus	546		97.39
PRK09039	343	hypothetical protein; Validated	97.37
KOG0995|consensus	581		97.35
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.3
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.24
KOG0933|consensus	1174		97.2
KOG4674|consensus	1822		97.18
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	97.17
KOG4674|consensus	1822		97.09
KOG0964|consensus	1200		97.09
KOG0971|consensus	1243		97.08
KOG0999|consensus	772		97.06
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.04
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.03
KOG1003|consensus	205		96.99
KOG0977|consensus	546		96.95
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.95
KOG0980|consensus	980		96.88
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.82
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	96.78
cd01207	111	Ena-Vasp Enabled-VASP-type homology (EVH1) domain.	96.77
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.73
PRK04778	569	septation ring formation regulator EzrA; Provision	96.73
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.72
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.67
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.61
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.58
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.54
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.53
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.52
KOG0964|consensus	1200		96.49
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.47
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.46
PRK04778	569	septation ring formation regulator EzrA; Provision	96.44
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.42
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	96.41
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	96.4
KOG4643|consensus	1195		96.4
KOG0978|consensus	698		96.4
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.38
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.36
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.34
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	96.28
KOG0979|consensus	1072		96.23
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.17
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	96.13
KOG0612|consensus	1317		96.11
KOG0946|consensus	970		96.05
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.03
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	96.01
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.98
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.97
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.97
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.95
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.93
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.92
KOG1003|consensus	205		95.92
COG5185	622	HEC1 Protein involved in chromosome segregation, i	95.87
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.86
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	95.85
PF10186	302	Atg14: UV radiation resistance protein and autopha	95.78
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.77
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.7
KOG1029|consensus	1118		95.67
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	95.66
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.58
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.56
KOG0999|consensus	772		95.53
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	95.5
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	95.45
KOG1853|consensus	333		95.44
PF15294	278	Leu_zip: Leucine zipper	95.34
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	95.33
KOG0994|consensus	1758		95.3
COG4026	290	Uncharacterized protein containing TOPRIM domain,	95.18
KOG0976|consensus	1265		95.18
KOG4673|consensus	961		95.16
KOG0018|consensus	1141		95.14
KOG0994|consensus	1758		95.12
KOG0946|consensus	970		95.05
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	95.03
PRK10884	206	SH3 domain-containing protein; Provisional	95.02
KOG2991|consensus	330		94.93
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.91
KOG1029|consensus	1118		94.91
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	94.89
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	94.82
KOG0979|consensus	1072		94.79
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.71
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.7
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	94.51
KOG4360|consensus	596		94.51
COG2433	652	Uncharacterized conserved protein [Function unknow	94.49
KOG0976|consensus	1265		94.49
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.48
KOG0243|consensus	1041		94.46
COG5185	622	HEC1 Protein involved in chromosome segregation, i	94.4
COG2433	652	Uncharacterized conserved protein [Function unknow	94.4
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	94.2
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.16
KOG0018|consensus	1141		94.16
KOG0980|consensus	980		94.13
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.13
PRK15422	79	septal ring assembly protein ZapB; Provisional	94.12
PF13166	712	AAA_13: AAA domain	94.1
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	94.06
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	94.03
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	93.9
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	93.87
COG4372	499	Uncharacterized protein conserved in bacteria with	93.81
KOG1937|consensus	521		93.69
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	93.64
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	93.64
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	93.62
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	93.44
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	93.44
KOG1853|consensus	333		93.41
KOG4673|consensus	961		93.28
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	93.26
PRK10869	553	recombination and repair protein; Provisional	93.25
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	93.18
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	93.18
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	93.17
KOG0963|consensus	629		93.17
KOG4360|consensus	596		93.15
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	93.13
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	92.91
KOG4302|consensus	660		92.89
PRK10698	222	phage shock protein PspA; Provisional	92.88
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	92.83
PRK10884	206	SH3 domain-containing protein; Provisional	92.74
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	92.7
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	92.67
COG4477	570	EzrA Negative regulator of septation ring formatio	92.67
PF13514	1111	AAA_27: AAA domain	92.66
KOG4593|consensus	716		92.6
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	92.55
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	92.48
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	92.36
KOG4809|consensus	654		92.23
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	92.12
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	92.07
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	92.04
KOG0249|consensus	916		91.97
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	91.92
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	91.85
PF10186	302	Atg14: UV radiation resistance protein and autopha	91.82
COG4942	420	Membrane-bound metallopeptidase [Cell division and	91.74
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	91.51
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	91.48
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	91.46
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	91.34
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	91.33
PF13514	1111	AAA_27: AAA domain	91.31
KOG0962|consensus	1294		91.3
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	91.24
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	91.08
PF02994	370	Transposase_22: L1 transposable element; InterPro:	91.07
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.0
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	90.95
KOG0612|consensus	1317		90.94
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	90.9
PRK11281	1113	hypothetical protein; Provisional	90.86
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	90.85
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	90.79
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	90.78
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	90.73
KOG0243|consensus	1041		90.7
KOG0963|consensus	629		90.62
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	90.61
KOG1937|consensus	521		90.38
PRK15422	79	septal ring assembly protein ZapB; Provisional	90.15
PF12240	205	Angiomotin_C: Angiomotin C terminal; InterPro: IPR	90.12
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	89.98
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	89.94
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	89.74
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	89.51
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	89.46
KOG0249|consensus	916		89.2
PRK10929	1109	putative mechanosensitive channel protein; Provisi	89.03
KOG0804|consensus	493		88.96
COG4026	290	Uncharacterized protein containing TOPRIM domain,	88.84
KOG0982|consensus	502		88.84
KOG0288|consensus	459		88.82
KOG0804|consensus	493		88.63
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	88.62
KOG1899|consensus	861		88.62
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	88.28
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	88.25
PRK10246	1047	exonuclease subunit SbcC; Provisional	87.92
PF10205	102	KLRAQ: Predicted coiled-coil domain-containing pro	87.75
PF13166	712	AAA_13: AAA domain	87.47
COG4372	499	Uncharacterized protein conserved in bacteria with	87.4
KOG0982|consensus	502		87.35
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	87.08
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.94
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	86.9
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	86.58
PRK11281	1113	hypothetical protein; Provisional	85.95
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	85.76
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	85.62
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	85.56
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	85.38
KOG4809|consensus	654		85.27
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	85.22
PRK10929	1109	putative mechanosensitive channel protein; Provisi	85.11
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	84.85
PLN02939	977	transferase, transferring glycosyl groups	84.82
cd00837	104	EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homolog	84.66
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	84.31
PF00568	111	WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1	84.18
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	83.73
PF02994	370	Transposase_22: L1 transposable element; InterPro:	83.71
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	83.25
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	82.94
TIGR02231	525	conserved hypothetical protein. This family consis	82.38
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	82.33
TIGR02231	525	conserved hypothetical protein. This family consis	82.32
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	82.31
KOG4005|consensus	292		82.17
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	82.01
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	82.01
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	81.96
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	81.83
smart00461	106	WH1 WASP homology region 1. Region of the Wiskott-	81.82
KOG0962|consensus	1294		81.81
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	81.55
PF12761	195	End3: Actin cytoskeleton-regulatory complex protei	81.49
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	81.01
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	80.93
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	80.89
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	80.63
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	80.51
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	80.27
KOG1760|consensus	131		80.18

>cd01206 Homer Homer type EVH1 domain

Probab=99.27  E-value=8e-13  Score=105.00  Aligned_cols=36  Identities=58%  Similarity=0.781  Sum_probs=31.7

Q ss_pred             CcccccccccccchhhhhHHHHHH----HHHhhHHHhhHH
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLDTLLASQD   36 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~~~~~~~~   36 (270)
                      |+|||||++||||+|+||||||||    ++.++.+..+.+
T Consensus        65 ~~y~kas~~FhQWrD~R~~tVyGLnF~Sk~ea~~F~~~f~  104 (111)
T cd01206          65 MTFTKTSQKFGQWADSRANTVYGLGFSSEQQLTKFAEKFQ  104 (111)
T ss_pred             cceeecccccccccccccceeeecccCCHHHHHHHHHHHH
Confidence            899999999999999999999999    888886655543

Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.64  E-value=2.2e-05  Score=83.78  Aligned_cols=19  Identities=16%  Similarity=0.489  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHhhHHHHHHh
Q psy5601         169 LRKELTSVRSKNETLDSEL  187 (270)
Q Consensus       169 l~~e~~~L~~~l~~lE~~l  187 (270)
                      +..++..+...+..++.++
T Consensus       803 l~~~~~~l~~~~~~l~~~~  821 (1164)
T TIGR02169       803 LEEEVSRIEARLREIEQKL  821 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.55  E-value=5.9e-05  Score=75.25  Aligned_cols=190  Identities=22%  Similarity=0.285  Sum_probs=123.3

Q ss_pred             hHHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHH
Q psy5601          62 WEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSE  141 (270)
Q Consensus        62 ~E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~e  141 (270)
                      +..+...|...|..|..-.......|..++.+|...+.++..|.....++..      ....+..++..|.....++...
T Consensus       148 ~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~------~~e~l~~E~~~L~~q~~e~~~r  221 (546)
T PF07888_consen  148 CQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTE------SSEELKEERESLKEQLAEARQR  221 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            4456667777777777777777778888888888888888888888777765      4555566677777777777777


Q ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHH
Q psy5601         142 LKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAA  221 (270)
Q Consensus       142 L~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~  221 (270)
                      |..++.+|..|..+..+.+......       ..+...++..+..+.   ..|.....++.............+..+...
T Consensus       222 i~~LEedi~~l~qk~~E~e~~~~~l-------k~~~~elEq~~~eLk---~rLk~~~~~~~~~~~~~~~~~~e~e~Lkeq  291 (546)
T PF07888_consen  222 IRELEEDIKTLTQKEKEQEKELDKL-------KELKAELEQLEAELK---QRLKETVVQLKQEETQAQQLQQENEALKEQ  291 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence            7777777777766664444322222       222222222222211   222222222222222334455556667788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601         222 ISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA  267 (270)
Q Consensus       222 i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~  267 (270)
                      ++.++..+..+++...-+..||..+...||.-+.+|+..|-+.+.|
T Consensus       292 Lr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql  337 (546)
T PF07888_consen  292 LRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQL  337 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            8888888888888888888899999999999999888888665543

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.48  E-value=0.00033  Score=63.19  Aligned_cols=66  Identities=9%  Similarity=0.179  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601         202 HAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA  267 (270)
Q Consensus       202 e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~  267 (270)
                      +....+...++.++..|..++...+.+.+.+......+...+..|.+.+..-...+..+..+|-..
T Consensus       165 ~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~  230 (237)
T PF00261_consen  165 EKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT  230 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555666666666666666666666666666666666666666443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.46  E-value=0.00014  Score=79.07  Aligned_cols=47  Identities=17%  Similarity=0.288  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601         218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI  264 (270)
Q Consensus       218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l  264 (270)
                      ++..+..+...+..++.....+...+..+...+...-..|..+...+
T Consensus       854 ~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~  900 (1163)
T COG1196         854 LEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL  900 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444444444444444444443333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.35  E-value=0.00036  Score=75.84  Aligned_cols=7  Identities=14%  Similarity=-0.197  Sum_probs=4.1

Q ss_pred             hHHHHHH
Q psy5601          18 ANTVSLV   24 (270)
Q Consensus        18 an~~~~~   24 (270)
                      ++-+||+
T Consensus       588 ~~g~~~~  594 (1163)
T COG1196         588 APGFLGL  594 (1163)
T ss_pred             ccchhHH
Confidence            5556665

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.34  E-value=0.00023  Score=64.26  Aligned_cols=122  Identities=19%  Similarity=0.275  Sum_probs=59.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhH
Q psy5601         134 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQ  213 (270)
Q Consensus       134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~  213 (270)
                      ..++....|...+..+.+...++..++.   .+..|..++..+...|..+|..-.........+...+..|..++..++.
T Consensus       114 k~~E~~rkl~~~E~~Le~aEeR~e~~E~---ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~  190 (237)
T PF00261_consen  114 KYEEVERKLKVLEQELERAEERAEAAES---KIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAEN  190 (237)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhch---hHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333332   3444444555555555555544444444444444445555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5601         214 ENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELA  258 (270)
Q Consensus       214 r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~  258 (270)
                      |...++..|..|+..+..+...+...+.....+...+|.-+.+|+
T Consensus       191 Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~  235 (237)
T PF00261_consen  191 RAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELN  235 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            555555555555555555555555555555555555555554443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.34  E-value=0.0022  Score=59.43  Aligned_cols=78  Identities=21%  Similarity=0.315  Sum_probs=41.8

Q ss_pred             HHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5601         183 LDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLD----TLLASQDAQRRIIDTLNHQLAGRVAELA  258 (270)
Q Consensus       183 lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Le----e~~~~~~~~~~El~~l~e~ld~ki~eL~  258 (270)
                      ....+.....++..++..+..+..++..+..++..|+.+|.+++..+.    ........++.++..+.......+.++.
T Consensus       207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~  286 (312)
T PF00038_consen  207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ  286 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence            333444444555555555666666666666666666666665544333    2444455555555555555555555444


Q ss_pred             HH
Q psy5601         259 TI  260 (270)
Q Consensus       259 el  260 (270)
                      +|
T Consensus       287 ~L  288 (312)
T PF00038_consen  287 EL  288 (312)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.32  E-value=0.00016  Score=60.74  Aligned_cols=132  Identities=20%  Similarity=0.295  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHH
Q psy5601          92 KQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRK  171 (270)
Q Consensus        92 ~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~  171 (270)
                      .+.....+....+...+..++.      .....+.++.+|...+..++.+|..++..+..+...+.+.+...+....|..
T Consensus         7 ~E~d~a~~r~e~~e~~~K~le~------~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~r   80 (143)
T PF12718_consen    7 LEADNAQDRAEELEAKVKQLEQ------ENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNR   80 (143)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHh
Confidence            3444444555555555555554      4445556666777777777777777777777777777555544333445555


Q ss_pred             HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5601         172 ELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQL  229 (270)
Q Consensus       172 e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~L  229 (270)
                      ++.-|.++|+..+..+......+.+.....+.+..++..++.+....+.++..+...+
T Consensus        81 riq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~  138 (143)
T PF12718_consen   81 RIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY  138 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            5555555555555555554444444433343344444444444444444444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=98.19  E-value=0.0034  Score=55.01  Aligned_cols=120  Identities=18%  Similarity=0.228  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHH
Q psy5601         145 RDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISL  224 (270)
Q Consensus       145 ~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~  224 (270)
                      .++|++.|+.-+..|+.   +...|..++-.+..+..-|...+..++.+-..+..+.+-+..+...+...+..|..+|-.
T Consensus        65 l~eEledLk~~~~~lEE---~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~  141 (193)
T PF14662_consen   65 LEEELEDLKTLAKSLEE---ENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCE  141 (193)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence            57888888887777776   445566666667777777777777777776666666777777777777777777777666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601         225 VQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA  267 (270)
Q Consensus       225 LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~  267 (270)
                      .+.-+-....-..+-..-+..|...++..-.-..++|-++++|
T Consensus       142 ~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~L  184 (193)
T PF14662_consen  142 FESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRL  184 (193)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555444444333333343333333333334445555554

>PRK02224 chromosome segregation protein; Provisional

Probab=98.16  E-value=0.0018  Score=68.09  Aligned_cols=6  Identities=50%  Similarity=0.579  Sum_probs=2.2

Q ss_pred             HHHHHH
Q psy5601          87 VEEWKK   92 (270)
Q Consensus        87 v~~wk~   92 (270)
                      +..|+.
T Consensus       491 l~~~~~  496 (880)
T PRK02224        491 VEEVEE  496 (880)
T ss_pred             HHHHHH
Confidence            333333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.12  E-value=0.00076  Score=56.63  Aligned_cols=96  Identities=21%  Similarity=0.282  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHH
Q psy5601          94 LQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKEL  173 (270)
Q Consensus        94 L~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~  173 (270)
                      +..++-+.+....++..+++      .++.++..+......|..|...+..++.+++.+..++......-.........+
T Consensus         2 m~~lk~E~d~a~~r~e~~e~------~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~   75 (143)
T PF12718_consen    2 MQALKLEADNAQDRAEELEA------KVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA   75 (143)
T ss_pred             hHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Confidence            34566666666677766665      555555555555555555555555555555555555544444322223333333


Q ss_pred             HHHHHhhHHHHHHhhhhHHHHH
Q psy5601         174 TSVRSKNETLDSELKCRDEEVK  195 (270)
Q Consensus       174 ~~L~~~l~~lE~~l~~~d~el~  195 (270)
                      +.|..+|.-||..+...+..+.
T Consensus        76 E~l~rriq~LEeele~ae~~L~   97 (143)
T PF12718_consen   76 EQLNRRIQLLEEELEEAEKKLK   97 (143)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHH
Confidence            4444444444444444443333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0933|consensus

Probab=98.09  E-value=0.0016  Score=68.49  Aligned_cols=150  Identities=20%  Similarity=0.281  Sum_probs=123.5

Q ss_pred             hhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHH
Q psy5601         118 SEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKK  196 (270)
Q Consensus       118 ~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~  196 (270)
                      ...+.+|.++......+|.+...-+..++.++..|.+.+.+-... .+....+..++..+..+++.-...+.....+...
T Consensus       740 ~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~  819 (1174)
T KOG0933|consen  740 LDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYER  819 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            336677777777777777777777788899999998888777766 7888899999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601         197 LTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA  267 (270)
Q Consensus       197 L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~  267 (270)
                      |..+++.+...+.........++..+.+|+.++..+.........++..+...+...-.-+...-..|..+
T Consensus       820 l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~  890 (1174)
T KOG0933|consen  820 LQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGL  890 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhh
Confidence            99999999999999999888888888888888888888888888777777777766666666555555443

>KOG0996|consensus

Probab=98.08  E-value=0.005  Score=65.88  Aligned_cols=142  Identities=16%  Similarity=0.195  Sum_probs=78.4

Q ss_pred             HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHH
Q psy5601         126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAV  204 (270)
Q Consensus       126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l  204 (270)
                      .++..+..-++.....+..++.||..|.......+.. +..-..+..+-..++.++..++.++......++..+.++...
T Consensus       426 ~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~va  505 (1293)
T KOG0996|consen  426 RKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVA  505 (1293)
T ss_pred             hhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444445555555555555544444433 333445555566666666666666666666666666666666


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601         205 EDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA  267 (270)
Q Consensus       205 ~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~  267 (270)
                      ..++..+..+...+-.++.+++..|..+.....+-..++..+...+..+..++..+.+.|.++
T Consensus       506 esel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~  568 (1293)
T KOG0996|consen  506 ESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKL  568 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHH
Confidence            666666666666655556666666555555555555555555555555555555554444443

>TIGR00606 rad50 rad50

Probab=98.06  E-value=0.0022  Score=70.65  Aligned_cols=116  Identities=11%  Similarity=0.150  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhhHHhhhh-h-----hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHH-------
Q psy5601         145 RDEEVKKLTNAKHAVEDK-C-----KAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLL-------  211 (270)
Q Consensus       145 ~e~Eie~L~~qi~~LE~~-~-----~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~-------  211 (270)
                      +..++..++.+|..|+.. .     ..+.++..++..+..+++.+...+.....+...+..++..|+.++..+       
T Consensus       797 ~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl  876 (1311)
T TIGR00606       797 FQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQI  876 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777777777777665 1     112334444444444444443333322333333222222221111111       


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5601         212 ---SQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATI  260 (270)
Q Consensus       212 ---~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el  260 (270)
                         -.....++.++..+...++.+......+..++..+...++....++..+
T Consensus       877 ~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  928 (1311)
T TIGR00606       877 GTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEEL  928 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence               1122224555555555555555555555555555544444444444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=98.04  E-value=0.0035  Score=56.87  Aligned_cols=119  Identities=17%  Similarity=0.264  Sum_probs=58.2

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHhhHHhhhh------hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHH
Q psy5601         133 SKNETLDSELKCRDEEVKKLTNAKHAVEDK------CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED  206 (270)
Q Consensus       133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~~------~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~  206 (270)
                      ..++.++.++...+.+|..++.++...+..      ..+...|..+++.+.+++..|+..+.....++..+..++..+..
T Consensus        52 ~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~  131 (239)
T COG1579          52 IELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE  131 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555555555555555555555555544      33344455555555555555555555555555555544544444


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5601         207 KCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRV  254 (270)
Q Consensus       207 ~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki  254 (270)
                      .+...+....+++..   ++..+....+.......+...|...++..+
T Consensus       132 ~~~~~e~~~~e~~~~---~e~e~~~i~e~~~~~~~~~~~L~~~l~~el  176 (239)
T COG1579         132 RLERLEKNLAEAEAR---LEEEVAEIREEGQELSSKREELKEKLDPEL  176 (239)
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            444444444443322   223333344444444445555555555443

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.02  E-value=0.0053  Score=61.15  Aligned_cols=40  Identities=18%  Similarity=0.173  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5601         221 AISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATI  260 (270)
Q Consensus       221 ~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el  260 (270)
                      ++..++.+++.++........++..+.+.++....++.++
T Consensus       359 ~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~  398 (562)
T PHA02562        359 KAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL  398 (562)
T ss_pred             HHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444443333344444444444444333333

>KOG0161|consensus

Probab=98.01  E-value=0.0035  Score=70.68  Aligned_cols=134  Identities=19%  Similarity=0.284  Sum_probs=69.2

Q ss_pred             HHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh----hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601         125 RKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK----CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA  200 (270)
Q Consensus       125 e~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~----~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e  200 (270)
                      +++..++..-...++.++++++..+++=+....+++..    .++...+.+.+..+....+.+...+.+++.++..+...
T Consensus      1005 eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k 1084 (1930)
T KOG0161|consen 1005 EEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSK 1084 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444445555554444444333333333311    33334455555556666667777777777777777777


Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5601         201 KHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELA  258 (270)
Q Consensus       201 ~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~  258 (270)
                      +++....+..+...+.++..+|.+|...|+.-+.....++.....|...++....+|.
T Consensus      1085 ~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1085 LEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665555555555555555555555555555554444444444444444444333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.97  E-value=0.0037  Score=64.74  Aligned_cols=191  Identities=18%  Similarity=0.275  Sum_probs=107.8

Q ss_pred             HHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHH
Q psy5601          65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKC  144 (270)
Q Consensus        65 el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~  144 (270)
                      +|+..|.....|..-+.-.+.+-...+.+|..++.+|+.|+.++..+..+..             .=+..|..||..|.+
T Consensus       433 eLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq-------------~DKq~l~~LEkrL~e  499 (697)
T PF09726_consen  433 ELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQ-------------QDKQSLQQLEKRLAE  499 (697)
T ss_pred             HHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
Confidence            4445555555566666556666678888899999999999999988875332             222344444444443


Q ss_pred             HHHHHHHHHHhhHHhhhh-------------------hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601         145 RDEEVKKLTNAKHAVEDK-------------------CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE  205 (270)
Q Consensus       145 ~e~Eie~L~~qi~~LE~~-------------------~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~  205 (270)
                      -..--..|++++.+....                   ..-...++.+...|+.++..|..+++.+++.+..|..++.++.
T Consensus       500 E~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr  579 (697)
T PF09726_consen  500 ERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELR  579 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222222111100                   0111125556666666666666666666666666665543322


Q ss_pred             -------HHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy5601         206 -------DKCKLLSQENAELQAAISLVQAQLD-------TLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTAL  268 (270)
Q Consensus       206 -------~~~e~~~~r~~~lE~~i~~LE~~Le-------e~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~~  268 (270)
                             .+++.+-.-++.+..+..-||.-|.       ++=..+...+.++.-+...+-.+-.+|.+|...|+.++
T Consensus       580 ~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~  656 (697)
T PF09726_consen  580 KYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL  656 (697)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   2344344444444444444444432       34455666667777777888888888888888777664

; GO: 0016021 integral to membrane

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.97  E-value=0.004  Score=62.04  Aligned_cols=27  Identities=4%  Similarity=0.175  Sum_probs=10.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601          82 ESTANVEEWKKQLQAYKEENQKLKTKY  108 (270)
Q Consensus        82 Es~a~v~~wk~qL~~l~een~rL~~~i  108 (270)
                      +....+.....++..+......+...+
T Consensus       178 e~~~~i~~l~~~i~~l~~~i~~~~~~i  204 (562)
T PHA02562        178 ELNQQIQTLDMKIDHIQQQIKTYNKNI  204 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            333344444444444444444333333

>KOG0250|consensus

Probab=97.96  E-value=0.0039  Score=66.26  Aligned_cols=135  Identities=16%  Similarity=0.227  Sum_probs=63.6

Q ss_pred             HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-----------hhhhHHHHHHHHHHHHhhHHHHHHh-
Q psy5601         120 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-----------CKAAVELRKELTSVRSKNETLDSEL-  187 (270)
Q Consensus       120 ~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-----------~~eipel~~e~~~L~~~l~~lE~~l-  187 (270)
                      .+..++...++..+.+.++.....+++.||+.+++.+..+...           |+.+..++..++.++..|..++... 
T Consensus       310 k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~  389 (1074)
T KOG0250|consen  310 KIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTN  389 (1074)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555566666666666777777766666544432           4444445555555544444444444 


Q ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5601         188 KCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRV  254 (270)
Q Consensus       188 ~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki  254 (270)
                      .....++.+....++.|..+++.++.-+..|......+...+..-+.+..+.+.++..+.....-..
T Consensus       390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~  456 (1074)
T KOG0250|consen  390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS  456 (1074)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333444444444444444444444444444444444444444444444433333333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.94  E-value=0.0031  Score=57.23  Aligned_cols=117  Identities=20%  Similarity=0.317  Sum_probs=64.3

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhh--hhHHHHHHHHHhhHHHHHHHHH
Q psy5601         133 SKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELK--CRDEEVKKLTNAKHAVEDKCKL  210 (270)
Q Consensus       133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~--~~d~el~~L~~e~e~l~~~~e~  210 (270)
                      +..+.+...+.+++.+++.|+.++..          +...+..+++++.+++..+.  ....+++.|..++..+.+++..
T Consensus        38 ~e~e~~~~~~~~~~~e~e~le~qv~~----------~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~  107 (239)
T COG1579          38 AELEALNKALEALEIELEDLENQVSQ----------LESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS  107 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444455555555555533          33344445555555554443  2334556666666666666666


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5601         211 LSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELAT  259 (270)
Q Consensus       211 ~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~e  259 (270)
                      +...+..+..++..++..+..++.+...++..+......++..+..+..
T Consensus       108 le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e  156 (239)
T COG1579         108 LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE  156 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666655555554

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.92  E-value=0.0061  Score=63.72  Aligned_cols=201  Identities=16%  Similarity=0.200  Sum_probs=124.8

Q ss_pred             HHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhccc-hhHHHHHHHHHhhhhhchH
Q psy5601          65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKY-------IELEATKGV-SEAAVELRKELTSVRSKNE  136 (270)
Q Consensus        65 el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i-------~Ele~~~~~-~~~~~ele~e~~~l~~~~e  136 (270)
                      |+.++.....-+.....+....|...+.+|.+....++.|..-+       .+...+++. ...+..+..++.-+..+|.
T Consensus       302 E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~  381 (775)
T PF10174_consen  302 ELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIE  381 (775)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445544444444455666667777777766655555544444       444443332 2256677788888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHH------------HhhHHHHHHhhhhHHHHHHHHHh-hH
Q psy5601         137 TLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVR------------SKNETLDSELKCRDEEVKKLTNA-KH  202 (270)
Q Consensus       137 ele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~------------~~l~~lE~~l~~~d~el~~L~~e-~e  202 (270)
                      .+...++.++.+|..|..+|+.|+.. ...-..+....+.|.            ..|+..-.........|..+... ..
T Consensus       382 ~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~  461 (775)
T PF10174_consen  382 DLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEK  461 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888999999988888866 333333333334444            33333333333333333333222 11


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601         203 AVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREIN  265 (270)
Q Consensus       203 ~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~  265 (270)
                      +..+.++.....+..+...|..|+..|.+..-....++.+...|.....++-.+|..+|-.+.
T Consensus       462 e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lE  524 (775)
T PF10174_consen  462 ERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELE  524 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHH
Confidence            345567777777777888888888888888877777777777777777777777776666654

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0996|consensus

Probab=97.91  E-value=0.0056  Score=65.51  Aligned_cols=194  Identities=13%  Similarity=0.186  Sum_probs=90.1

Q ss_pred             chhHHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHH
Q psy5601          60 KKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLD  139 (270)
Q Consensus        60 ~~~E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele  139 (270)
                      ..|=.++.++-..+.+....|-.....+++.+++++........++........      .+..+..++.+|.......+
T Consensus       387 ~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~------~i~~~~~ei~~L~~~~~~~~  460 (1293)
T KOG0996|consen  387 ESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARI------EIQKCQTEIEQLEELLEKEE  460 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHh------HHHHHHHHHHHHHHHHHHHH
Confidence            345556666666777777777777777777777777777666666665554443      33333333333333333222


Q ss_pred             HHHHH----HHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHH
Q psy5601         140 SELKC----RDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQEN  215 (270)
Q Consensus       140 ~eL~~----~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~  215 (270)
                      ..+..    ++.+.+.++..+..++.   +...+..++-.++.+++-++++++.+-.--+.....++++...+......+
T Consensus       461 ~~l~e~~~~l~~~t~~~~~e~~~~ek---el~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~  537 (1293)
T KOG0996|consen  461 RELDEILDSLKQETEGIREEIEKLEK---ELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESL  537 (1293)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22221    22222222222222222   111122233333333333333333333333333334555666666655555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy5601         216 AELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHR  262 (270)
Q Consensus       216 ~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~  262 (270)
                      .+..+.+..++..|...+....+...++..++.....+...++.+|+
T Consensus       538 ~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rq  584 (1293)
T KOG0996|consen  538 KEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQ  584 (1293)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            55444555555555444444444444444444444433333333333

>TIGR00606 rad50 rad50

Probab=97.87  E-value=0.01  Score=65.57  Aligned_cols=27  Identities=11%  Similarity=0.204  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         218 LQAAISLVQAQLDTLLASQDAQRRIID  244 (270)
Q Consensus       218 lE~~i~~LE~~Lee~~~~~~~~~~El~  244 (270)
                      +...+..+...+..+......+...|.
T Consensus       996 l~~~i~~l~kel~~~~~~kr~l~dnL~ 1022 (1311)
T TIGR00606       996 INEDMRLMRQDIDTQKIQERWLQDNLT 1022 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.85  E-value=0.0098  Score=59.71  Aligned_cols=63  Identities=22%  Similarity=0.462  Sum_probs=32.9

Q ss_pred             HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh----hhhhHHHHHHHHHHHHhhHHHHHHhh
Q psy5601         126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK----CKAAVELRKELTSVRSKNETLDSELK  188 (270)
Q Consensus       126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~----~~eipel~~e~~~L~~~l~~lE~~l~  188 (270)
                      .+..++..+++.|+++|.....+...|..+..++...    ..+...|..+.+....+|..||..+.
T Consensus       164 ~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~  230 (546)
T PF07888_consen  164 EEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIK  230 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555567777777777666777776666655543    22223333334444444444443333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0161|consensus

Probab=97.85  E-value=0.01  Score=67.06  Aligned_cols=71  Identities=20%  Similarity=0.317  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601          85 ANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED  161 (270)
Q Consensus        85 a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~  161 (270)
                      ....+|..+..+....+..|...|..++.      .+..+-.++..+-..+.++-.++...++.+..|.+....|++
T Consensus       950 ~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e------~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~ 1020 (1930)
T KOG0161|consen  950 LTLQKLELEKNAAENKLKNLEEEINSLDE------NISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQ 1020 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444443333      222222333333344444444444444444444444444443

>KOG0250|consensus

Probab=97.84  E-value=0.009  Score=63.61  Aligned_cols=21  Identities=33%  Similarity=0.344  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy5601          92 KQLQAYKEENQKLKTKYIELE  112 (270)
Q Consensus        92 ~qL~~l~een~rL~~~i~Ele  112 (270)
                      .++..+.+++-..+.++..+.
T Consensus       281 ~ql~~~~~~i~~~qek~~~l~  301 (1074)
T KOG0250|consen  281 RQLNNQEEEIKKKQEKVDTLQ  301 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444433

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.84  E-value=0.016  Score=60.74  Aligned_cols=204  Identities=17%  Similarity=0.228  Sum_probs=94.3

Q ss_pred             HHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHhhhhhchHHHHHHHH
Q psy5601          65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGV-SEAAVELRKELTSVRSKNETLDSELK  143 (270)
Q Consensus        65 el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~-~~~~~ele~e~~~l~~~~eele~eL~  143 (270)
                      ++..-+..-..++.-+-.+.-.+..-+.+|.+++.....+...-.+...|-.. -..+...+...+-|-+.|+.|...|.
T Consensus       274 ~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle  353 (775)
T PF10174_consen  274 QLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLE  353 (775)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            44444444444444444455555555555555554444433333332211000 00334444555666666666666666


Q ss_pred             HHHHHHHHHHHhhHHhhhh----hhhhHHHHHHHHHHHHhhH-------HHHHHhhhhHHHHHHHHHhhH---------H
Q psy5601         144 CRDEEVKKLTNAKHAVEDK----CKAAVELRKELTSVRSKNE-------TLDSELKCRDEEVKKLTNAKH---------A  203 (270)
Q Consensus       144 ~~e~Eie~L~~qi~~LE~~----~~eipel~~e~~~L~~~l~-------~lE~~l~~~d~el~~L~~e~e---------~  203 (270)
                      .+..-+.....++..+...    .++|..+.+.++....+|.       .|+..+.+++..+..++..+.         .
T Consensus       354 ~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~  433 (775)
T PF10174_consen  354 EKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDE  433 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHH
Confidence            6666666666666555544    3444444444444333333       333334444444333332221         1


Q ss_pred             HHHHHHHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy5601         204 VEDKCKLLSQENAELQAAIS--------LVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTAL  268 (270)
Q Consensus       204 l~~~~e~~~~r~~~lE~~i~--------~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~~  268 (270)
                      +...++.+.....-+-..+.        ....+++..+.....++..+..|...+..+-..|..++...++|+
T Consensus       434 ~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~  506 (775)
T PF10174_consen  434 ALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLA  506 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHh
Confidence            11222222222211111111        223445555555556666666666666666666666666666654

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0995|consensus

Probab=97.81  E-value=0.011  Score=59.35  Aligned_cols=123  Identities=20%  Similarity=0.298  Sum_probs=70.1

Q ss_pred             hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy5601          68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDE  147 (270)
Q Consensus        68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~  147 (270)
                      .|+..|..|-..+.    .+++...-++.+++..++|+.-+.-..+      -..+|......+...|+.+..++..+++
T Consensus       239 ~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~------y~~~~~~k~~~~~~~l~~l~~Eie~kEe  308 (581)
T KOG0995|consen  239 DLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQA------YVSQMKSKKQHMEKKLEMLKSEIEEKEE  308 (581)
T ss_pred             HHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            45555555544444    2333333334444444444444443333      4444445555555666677777777777


Q ss_pred             HHHHHHHhhHHhhhh-------hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601         148 EVKKLTNAKHAVEDK-------CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA  200 (270)
Q Consensus       148 Eie~L~~qi~~LE~~-------~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e  200 (270)
                      |++.|+.++.+|...       ...+.....+...|...|..+...++....++-++..+
T Consensus       309 E~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~  368 (581)
T KOG0995|consen  309 EIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLE  368 (581)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            777777777766655       44555566666667777776666666666666555553

>PRK09039 hypothetical protein; Validated

Probab=97.77  E-value=0.01  Score=56.63  Aligned_cols=100  Identities=11%  Similarity=0.054  Sum_probs=44.7

Q ss_pred             HhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHH
Q psy5601         128 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK  207 (270)
Q Consensus       128 ~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~  207 (270)
                      ...+...+.++..++...+.....|........   .....+..++..+..+|......+......+..|+.+++.|..+
T Consensus        76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~---~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q  152 (343)
T PRK09039         76 NQDLQDSVANLRASLSAAEAERSRLQALLAELA---GAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ  152 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            355556666666666665555555555443211   11223344444444444444444444444444444444444444


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHH
Q psy5601         208 CKLLSQENAELQAAISLVQAQLD  230 (270)
Q Consensus       208 ~e~~~~r~~~lE~~i~~LE~~Le  230 (270)
                      +..++..+.+++.+..+.+.+++
T Consensus       153 la~le~~L~~ae~~~~~~~~~i~  175 (343)
T PRK09039        153 LAALEAALDASEKRDRESQAKIA  175 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.73  E-value=0.02  Score=62.77  Aligned_cols=62  Identities=13%  Similarity=0.256  Sum_probs=35.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601         204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREIN  265 (270)
Q Consensus       204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~  265 (270)
                      +......+..+...++.++..++.++..+.........++..-...++..+..+.+.+..|.
T Consensus       814 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~  875 (1201)
T PF12128_consen  814 LREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLR  875 (1201)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33345555555555666666666666666655555555555555555555555555555443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=97.71  E-value=0.025  Score=53.04  Aligned_cols=134  Identities=21%  Similarity=0.251  Sum_probs=106.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHhhhhhhh--------hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601         134 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKA--------AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE  205 (270)
Q Consensus       134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~~~e--------ipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~  205 (270)
                      .++.|...+..+++|...||.+...|......        +..--.+....+..|..|...|..+-.+....+.+|..|.
T Consensus       161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll  240 (306)
T PF04849_consen  161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL  240 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777888888888888888877777644111        2223345566666677777777777777777777788888


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601         206 DKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA  267 (270)
Q Consensus       206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~  267 (270)
                      .++..++.+.+.+-..+..|...|...+..+..+..++..|.+.-..-..-|++.+.+|.++
T Consensus       241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l  302 (306)
T PF04849_consen  241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL  302 (306)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888999999988899999999999999999999999999999999999999999988765

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PRK03918 chromosome segregation protein; Provisional

Probab=97.70  E-value=0.03  Score=58.81  Aligned_cols=70  Identities=29%  Similarity=0.387  Sum_probs=29.6

Q ss_pred             HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHH
Q psy5601         126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVK  195 (270)
Q Consensus       126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~  195 (270)
                      ....++...+..+..++...+.++..+..++..++..-.....+..++..+...+..++..+.....++.
T Consensus       200 ~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~  269 (880)
T PRK03918        200 KELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIE  269 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444443334444444444444444444433333333333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=97.70  E-value=0.0074  Score=50.62  Aligned_cols=124  Identities=18%  Similarity=0.178  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q psy5601         120 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTN  199 (270)
Q Consensus       120 ~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~  199 (270)
                      .+++++.+...+...|..++++|...+.....+..+.+.-.+   .+..|..++..+..++.++       ..++..+..
T Consensus        11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~---eie~L~~el~~lt~el~~L-------~~EL~~l~s   80 (140)
T PF10473_consen   11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKA---EIETLEEELEELTSELNQL-------ELELDTLRS   80 (140)
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence            344444555566666666666666666555554444422222   2333444444444444444       445555556


Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5601         200 AKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGR  253 (270)
Q Consensus       200 e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~k  253 (270)
                      +.+.+...++....++.+|+..+.++..-|..+......+..+...-.+.|-.-
T Consensus        81 Ek~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~q  134 (140)
T PF10473_consen   81 EKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQ  134 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666666666665554444444444444333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK03918 chromosome segregation protein; Provisional

Probab=97.68  E-value=0.026  Score=59.29  Aligned_cols=31  Identities=19%  Similarity=0.235  Sum_probs=11.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         207 KCKLLSQENAELQAAISLVQAQLDTLLASQD  237 (270)
Q Consensus       207 ~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~  237 (270)
                      .+..+..++..+...+..++..+..+.....
T Consensus       667 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~  697 (880)
T PRK03918        667 EYLELSRELAGLRAELEELEKRREEIKKTLE  697 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=97.66  E-value=0.027  Score=49.80  Aligned_cols=100  Identities=15%  Similarity=0.198  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         169 LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE-LQAAISLVQAQLDTLLASQDAQRRIIDTLN  247 (270)
Q Consensus       169 l~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~-lE~~i~~LE~~Lee~~~~~~~~~~El~~l~  247 (270)
                      ++.++..+...|..|+-....+...+..+..+.+++..+.+.+-...+- ..-++--|+..|..+....+.-...|..+.
T Consensus        91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl  170 (201)
T PF13851_consen   91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVL  170 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444433333333 333333444444444444444444444444


Q ss_pred             HHHhHHHHHHHHHHHHHHHhh
Q psy5601         248 HQLAGRVAELATIHREINTAL  268 (270)
Q Consensus       248 e~ld~ki~eL~el~~~l~~~~  268 (270)
                      ..-.---..+..+..+|..+|
T Consensus       171 ~~~nldp~~~~~v~~~l~~~l  191 (201)
T PF13851_consen  171 AAANLDPAALSQVSKKLEDVL  191 (201)
T ss_pred             HHcCCCHHHHHHHHHHHHHHH
Confidence            443333344444445444443

>KOG4643|consensus

Probab=97.50  E-value=0.089  Score=55.93  Aligned_cols=206  Identities=19%  Similarity=0.262  Sum_probs=123.8

Q ss_pred             chhHHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h--ccchhHHHHHHHHHh------
Q psy5601          60 KKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEA--T--KGVSEAAVELRKELT------  129 (270)
Q Consensus        60 ~~~E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~--~--~~~~~~~~ele~e~~------  129 (270)
                      -..+.++++|+..+-+|..-|.|-+.+.-..+.+|+-++.+..+|+..+.+.=.  +  ......+..+....+      
T Consensus       173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~y  252 (1195)
T KOG4643|consen  173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTY  252 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCcc
Confidence            356678899999988888888888888888888888888888888888765421  1  111122333333221      


Q ss_pred             --------hhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhh------hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHH
Q psy5601         130 --------SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKC------KAAVELRKELTSVRSKNETLDSELKCRDEEVK  195 (270)
Q Consensus       130 --------~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~------~eipel~~e~~~L~~~l~~lE~~l~~~d~el~  195 (270)
                              =+++++++|+.+-+.+.++-+.|+.|+..+.++.      ++|-.++.+++.++....-.-..+..+-.+..
T Consensus       253 kerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEns  332 (1195)
T KOG4643|consen  253 KERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENS  332 (1195)
T ss_pred             chhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                    2567788888887777777777777777777762      33333333333333222221112222222222


Q ss_pred             HHHHh----------------------------------------------------------hHHHHHHHHHHhHHHHH
Q psy5601         196 KLTNA----------------------------------------------------------KHAVEDKCKLLSQENAE  217 (270)
Q Consensus       196 ~L~~e----------------------------------------------------------~e~l~~~~e~~~~r~~~  217 (270)
                      .|+.+                                                          .+.+..++-.++..+..
T Consensus       333 tLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~Kn  412 (1195)
T KOG4643|consen  333 TLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKN  412 (1195)
T ss_pred             HHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHh
Confidence            22211                                                          12222233344444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601         218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREIN  265 (270)
Q Consensus       218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~  265 (270)
                      +..+++.|+..+..+.....+++..-+.|...+++...+..+....++
T Consensus       413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~  460 (1195)
T KOG4643|consen  413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLS  460 (1195)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            666777777777777777777777777777777777777777665554

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.49  E-value=0.084  Score=48.90  Aligned_cols=37  Identities=30%  Similarity=0.306  Sum_probs=17.9

Q ss_pred             HHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhH
Q psy5601         121 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKH  157 (270)
Q Consensus       121 ~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~  157 (270)
                      +..+..+...++...+...+....++.++..|++.++
T Consensus        77 ~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld  113 (312)
T PF00038_consen   77 IDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLD  113 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            3334444444444444444444455555555555554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.48  E-value=0.075  Score=54.49  Aligned_cols=46  Identities=20%  Similarity=0.251  Sum_probs=29.1

Q ss_pred             hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601          68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEA  113 (270)
Q Consensus        68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~  113 (270)
                      .|+.+++.+.--.++.+..|..++.+..........|...|.++..
T Consensus        19 ~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~   64 (617)
T PF15070_consen   19 QLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKN   64 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666556666666666666666666666666666666554

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.41  E-value=0.093  Score=52.73  Aligned_cols=129  Identities=15%  Similarity=0.220  Sum_probs=58.7

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHH
Q psy5601         129 TSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKC  208 (270)
Q Consensus       129 ~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~  208 (270)
                      ..+...+++.+..|.....|+..|+.-+..|..   ++...+..+..++.........+.++..+++.++.+++.+....
T Consensus       284 ~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~---ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e  360 (522)
T PF05701_consen  284 ASAKKELEEAKKELEKAKEEASSLRASVESLRS---ELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEE  360 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhh
Confidence            334444445555555555555555555544443   33444444444555555555555555555555555544433333


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5601         209 KLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATI  260 (270)
Q Consensus       209 e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el  260 (270)
                      ........++-..+..+..+.+.++......+.++..++...+.-...+.++
T Consensus       361 ~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~  412 (522)
T PF05701_consen  361 EKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTA  412 (522)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444444444444444444444444444444433333

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0977|consensus

Probab=97.39  E-value=0.13  Score=51.88  Aligned_cols=157  Identities=18%  Similarity=0.245  Sum_probs=72.3

Q ss_pred             hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHH-HHHHHhhhh-------hchHHHHHHHHHHHH
Q psy5601          77 TSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVS-EAAVE-LRKELTSVR-------SKNETLDSELKCRDE  147 (270)
Q Consensus        77 ~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~-~~~~e-le~e~~~l~-------~~~eele~eL~~~e~  147 (270)
                      +-=|++.+.....+=-.+--|..+|..|...|..+....+.+ +.++. ++.++..++       .....++.+|..+..
T Consensus        41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~  120 (546)
T KOG0977|consen   41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE  120 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            333344444333444444466778888888888887643322 22221 223333333       344455555555555


Q ss_pred             HHHHHHHhhHHhhhhh----hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh-------hHHHHHHHHHHhHHHH
Q psy5601         148 EVKKLTNAKHAVEDKC----KAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA-------KHAVEDKCKLLSQENA  216 (270)
Q Consensus       148 Eie~L~~qi~~LE~~~----~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e-------~e~l~~~~e~~~~r~~  216 (270)
                      |+..|+.+....+..+    ..+......+..+..++.-+-+++...+.++..|+.+       +..+...++....-..
T Consensus       121 e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~  200 (546)
T KOG0977|consen  121 ELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRV  200 (546)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            5555555554443221    1122222333333333333334444444444444443       3333333333333334


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy5601         217 ELQAAISLVQAQLDTLL  233 (270)
Q Consensus       217 ~lE~~i~~LE~~Lee~~  233 (270)
                      +++.++.+|..+|+-+.
T Consensus       201 d~~n~~q~Lleel~f~~  217 (546)
T KOG0977|consen  201 DLQNRVQTLLEELAFLK  217 (546)
T ss_pred             HHHhHHHHHHHHHHHHH
Confidence            45555566555555554

>PRK09039 hypothetical protein; Validated

Probab=97.37  E-value=0.041  Score=52.44  Aligned_cols=126  Identities=15%  Similarity=0.152  Sum_probs=57.2

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHh
Q psy5601         133 SKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLS  212 (270)
Q Consensus       133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~  212 (270)
                      .....++..|..+...+..++.....|+..   ..........+...+..+..++......+.+..-++..|..+|+.+.
T Consensus        74 ~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~---~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr  150 (343)
T PRK09039         74 QGNQDLQDSVANLRASLSAAEAERSRLQAL---LAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALR  150 (343)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            444566666666666666555555555542   11222223344444444444444444444444334444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601         213 QENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI  264 (270)
Q Consensus       213 ~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l  264 (270)
                      ..++.++..|...+.+..+.+.....+...|.....   .++.+|..++.++
T Consensus       151 ~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~---~~~~~l~~~~~~~  199 (343)
T PRK09039        151 RQLAALEAALDASEKRDRESQAKIADLGRRLNVALA---QRVQELNRYRSEF  199 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHH
Confidence            444444444444444444444444433333332221   2345566666655

>KOG0995|consensus

Probab=97.35  E-value=0.052  Score=54.55  Aligned_cols=157  Identities=16%  Similarity=0.228  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHH
Q psy5601          90 WKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVEL  169 (270)
Q Consensus        90 wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel  169 (270)
                      .-.+++.++..|..|...|.+.+.   .++.++.+++....|...+....+-+..+..-.                 +..
T Consensus       233 i~~~ie~l~~~n~~l~e~i~e~ek---~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~-----------------~~~  292 (581)
T KOG0995|consen  233 IANEIEDLKKTNRELEEMINEREK---DPGKEESLREKKARLQDDVNKFQAYVSQMKSKK-----------------QHM  292 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-----------------HHH
Confidence            345777888888888888887664   333455555555544444443333333322222                 222


Q ss_pred             HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         170 RKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA---VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTL  246 (270)
Q Consensus       170 ~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~---l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l  246 (270)
                      ...+..+..+|++-|.++..+..+..+|+..++-   -..+++.....+..+...|..+..+++.+.+..-+...+....
T Consensus       293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~  372 (581)
T KOG0995|consen  293 EKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDF  372 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            2233344444444444444444444445444332   2345666666777788888888888888888888888888888


Q ss_pred             HHHHhHHHHHHHHHHHHHHH
Q psy5601         247 NHQLAGRVAELATIHREINT  266 (270)
Q Consensus       247 ~e~ld~ki~eL~el~~~l~~  266 (270)
                      .+.+..+..+++.+.+.|.-
T Consensus       373 f~~le~~~~~~~~l~~~i~l  392 (581)
T KOG0995|consen  373 FKELEKKFIDLNSLIRRIKL  392 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88899999999888777643

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.30  E-value=0.15  Score=47.61  Aligned_cols=96  Identities=19%  Similarity=0.300  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         167 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTL  246 (270)
Q Consensus       167 pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l  246 (270)
                      +.+-..+..|+..++.....+.-. ..+..|..+++.+..+...+-++++.+=..+.....++-.+-...++++.+...+
T Consensus       134 ~~lvq~I~~L~k~le~~~k~~e~~-~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~  212 (294)
T COG1340         134 RELVQKIKELRKELEDAKKALEEN-EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADEL  212 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666666555443322 3444455555554444444444444444444444444444444444444444444


Q ss_pred             HHHHhHHHHHHHHHHHH
Q psy5601         247 NHQLAGRVAELATIHRE  263 (270)
Q Consensus       247 ~e~ld~ki~eL~el~~~  263 (270)
                      ++..-........+|..
T Consensus       213 he~~ve~~~~~~e~~ee  229 (294)
T COG1340         213 HEEFVELSKKIDELHEE  229 (294)
T ss_pred             HHHHHHHHHHhHHHHHH
Confidence            44444444444444433

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.24  E-value=0.12  Score=45.34  Aligned_cols=175  Identities=16%  Similarity=0.162  Sum_probs=99.7

Q ss_pred             HhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy5601          66 LANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCR  145 (270)
Q Consensus        66 l~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~  145 (270)
                      +.+|..+|-+|.       .+..+.+..+....+-|++|...|..+..+-...   ...-..-..|..+++.|+.-+...
T Consensus        10 v~dL~~~n~~L~-------~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~---Qqal~~aK~l~eEledLk~~~~~l   79 (193)
T PF14662_consen   10 VEDLQLNNQKLA-------DENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL---QQALQKAKALEEELEDLKTLAKSL   79 (193)
T ss_pred             HHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346677776644       4566777777777777777777777665422211   111122234456666677666777


Q ss_pred             HHHHHHHHHhhHHhhhh----hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHH
Q psy5601         146 DEEVKKLTNAKHAVEDK----CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAA  221 (270)
Q Consensus       146 e~Eie~L~~qi~~LE~~----~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~  221 (270)
                      +++...|-++...+|.+    ..++..|.++...|....+-+-++...+-.+...|+.++.....-+-.-+.-..+-..+
T Consensus        80 EE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~  159 (193)
T PF14662_consen   80 EEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQ  159 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77777777777666654    44555566666666666666666655555555555555433222222222333334555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         222 ISLVQAQLDTLLASQDAQRRIIDTLNHQL  250 (270)
Q Consensus       222 i~~LE~~Lee~~~~~~~~~~El~~l~e~l  250 (270)
                      |..|...|++-..--..++.+...|.+++
T Consensus       160 i~eL~~~ieEy~~~teeLR~e~s~LEeql  188 (193)
T PF14662_consen  160 IEELKKTIEEYRSITEELRLEKSRLEEQL  188 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666665666665555554

>KOG0933|consensus

Probab=97.20  E-value=0.16  Score=54.15  Aligned_cols=130  Identities=17%  Similarity=0.266  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh----hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHH
Q psy5601         118 SEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK----CKAAVELRKELTSVRSKNETLDSELKCRDEE  193 (270)
Q Consensus       118 ~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~----~~eipel~~e~~~L~~~l~~lE~~l~~~d~e  193 (270)
                      ..++.++..+...+..++++-...+...+.+.+.|.-.++.++..    ......+..+++.|..++..+++.+.+...+
T Consensus       786 e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~  865 (1174)
T KOG0933|consen  786 ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKD  865 (1174)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence            335666666666666666655555555555555555444444432    1122233333333333333333333333333


Q ss_pred             HHHHHHhhHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         194 VKKLTNAKHA--------------VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLN  247 (270)
Q Consensus       194 l~~L~~e~e~--------------l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~  247 (270)
                      ...+..++.+              +...++.+..++...+-.+..|+.++...+........++..+.
T Consensus       866 ~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~  933 (1174)
T KOG0933|consen  866 VKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLL  933 (1174)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHH
Confidence            3333333222              22333444444444444444455555444444444444444433

>KOG4674|consensus

Probab=97.18  E-value=0.28  Score=55.44  Aligned_cols=126  Identities=25%  Similarity=0.322  Sum_probs=82.5

Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHh----hHHhhhh----hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh---
Q psy5601         132 RSKNETLDSELKCRDEEVKKLTNA----KHAVEDK----CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA---  200 (270)
Q Consensus       132 ~~~~eele~eL~~~e~Eie~L~~q----i~~LE~~----~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e---  200 (270)
                      -....-|..+|...-+++..++.+    +..|++.    ......+.+.+..+.....+|+..+.++..+|..++..   
T Consensus       191 ~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s  270 (1822)
T KOG4674|consen  191 ESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAES  270 (1822)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            334444555555555555555555    5555554    33556678888888888999999999888888887665   


Q ss_pred             ---------------hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5601         201 ---------------KHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAEL  257 (270)
Q Consensus       201 ---------------~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL  257 (270)
                                     .+-....++++..+..++...|..++.-|+++..+-.+...-+..+..-++.+...+
T Consensus       271 ~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~  342 (1822)
T KOG4674|consen  271 SEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKL  342 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence                           122444666666666667777777777777777776666666666555555555555

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=97.17  E-value=0.11  Score=43.51  Aligned_cols=19  Identities=21%  Similarity=0.275  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q psy5601          95 QAYKEENQKLKTKYIELEA  113 (270)
Q Consensus        95 ~~l~een~rL~~~i~Ele~  113 (270)
                      -+.+.+.+-|...|.-+++
T Consensus        13 K~~~~e~dsle~~v~~LEr   31 (140)
T PF10473_consen   13 KESESEKDSLEDHVESLER   31 (140)
T ss_pred             HHHHHhHhhHHHHHHHHHH
Confidence            3445555555555554443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG4674|consensus

Probab=97.09  E-value=0.34  Score=54.81  Aligned_cols=62  Identities=23%  Similarity=0.245  Sum_probs=44.2

Q ss_pred             hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhch
Q psy5601          68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKN  135 (270)
Q Consensus        68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~  135 (270)
                      .||.+|..+..-+++....|.+.+..+.-++..+..|...|....+      .+.-|+.+...++.+.
T Consensus      1233 ~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~a------el~~l~~e~~~wK~R~ 1294 (1822)
T KOG4674|consen 1233 VLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVA------ELKKLEEENDRWKQRN 1294 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence            5777777777778888888888888888888888888888887775      4444444444333333

>KOG0964|consensus

Probab=97.09  E-value=0.38  Score=51.29  Aligned_cols=101  Identities=20%  Similarity=0.266  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhHHH-------HHHHHHhhH-HHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHH
Q psy5601         167 VELRKELTSVRSKNETLDSELKCRDEE-------VKKLTNAKH-AVEDKCKLLSQENAE-----LQAAISLVQAQLDTLL  233 (270)
Q Consensus       167 pel~~e~~~L~~~l~~lE~~l~~~d~e-------l~~L~~e~e-~l~~~~e~~~~r~~~-----lE~~i~~LE~~Lee~~  233 (270)
                      |+..+++..|+.+|..+--.+...-.+       +..+...+. .|--++..+..++.+     ....+...+.+|....
T Consensus       781 ~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~  860 (1200)
T KOG0964|consen  781 PEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEE  860 (1200)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHH
Confidence            555555555555555554444432222       222222211 133344444444444     5666777788888888


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601         234 ASQDAQRRIIDTLNHQLAGRVAELATIHREINTA  267 (270)
Q Consensus       234 ~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~  267 (270)
                      .+++....++..+.+..+++...+.++...|.++
T Consensus       861 ~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~  894 (1200)
T KOG0964|consen  861 KRVEAAILELKTLQDSIDKKKAEIKEIKKELEKA  894 (1200)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888899999999999999999998888664

>KOG0971|consensus

Probab=97.08  E-value=0.13  Score=54.23  Aligned_cols=27  Identities=11%  Similarity=0.124  Sum_probs=9.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601         134 KNETLDSELKCRDEEVKKLTNAKHAVE  160 (270)
Q Consensus       134 ~~eele~eL~~~e~Eie~L~~qi~~LE  160 (270)
                      ++.+|+..-..+..+++.+...|.+|.
T Consensus       411 E~~eL~r~kE~Lsr~~d~aEs~iadlk  437 (1243)
T KOG0971|consen  411 ELEELRRQKERLSRELDQAESTIADLK  437 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

>KOG0999|consensus

Probab=97.06  E-value=0.32  Score=48.99  Aligned_cols=159  Identities=16%  Similarity=0.177  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh--
Q psy5601          85 ANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK--  162 (270)
Q Consensus        85 a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~--  162 (270)
                      ..|..++.+++.+-.+.++....+.....      ---++-+++..|....++|+++.+....|++.++.-...--+.  
T Consensus         8 q~ve~lr~eierLT~el~q~t~e~~qaAe------yGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hk   81 (772)
T KOG0999|consen    8 QEVEKLRQEIERLTEELEQTTEEKIQAAE------YGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHK   81 (772)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666665555555544433322      2233456677788888888888888777887776655433222  


Q ss_pred             ----------hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601         163 ----------CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL  232 (270)
Q Consensus       163 ----------~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~  232 (270)
                                .+-+.+--..-+..-..|-.|+.++..+..++...+.+.+.+......+..-++..|..-..|..+|.+.
T Consensus        82 k~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~  161 (772)
T KOG0999|consen   82 KVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEY  161 (772)
T ss_pred             HhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHH
Confidence                      2223333344455666777777777777777777777777766666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy5601         233 LASQDAQRRIIDTLNHQ  249 (270)
Q Consensus       233 ~~~~~~~~~El~~l~e~  249 (270)
                      +-+...+-.+-..|.+.
T Consensus       162 KfRE~RllseYSELEEE  178 (772)
T KOG0999|consen  162 KFREARLLSEYSELEEE  178 (772)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            55555554444444443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.04  E-value=0.17  Score=47.74  Aligned_cols=102  Identities=20%  Similarity=0.260  Sum_probs=63.6

Q ss_pred             HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601         126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE  205 (270)
Q Consensus       126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~  205 (270)
                      .....+..-+..+......+..++..|+....+++.-      =..++..++.+|..+...+..+...+.+++.++..+.
T Consensus       170 ~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~------D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~  243 (325)
T PF08317_consen  170 KQLEQLDELLPKLRERKAELEEELENLKQLVEEIESC------DQEELEALRQELAEQKEEIEAKKKELAELQEELEELE  243 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444455555555555666666666665544431      1245566666777766666666777777777777777


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy5601         206 DKCKLLSQENAELQAAISLVQAQLDTLL  233 (270)
Q Consensus       206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~  233 (270)
                      .+++.+..++..+...|..++..++..+
T Consensus       244 ~~i~~~~~~k~~l~~eI~e~~~~~~~~r  271 (325)
T PF08317_consen  244 EKIEELEEQKQELLAEIAEAEKIREECR  271 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7777777777777777777776666443

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.03  E-value=0.29  Score=45.78  Aligned_cols=32  Identities=9%  Similarity=0.177  Sum_probs=12.6

Q ss_pred             HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhH
Q psy5601         126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKH  157 (270)
Q Consensus       126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~  157 (270)
                      +.+..+..+|.+++.........+..|.+.+.
T Consensus        62 ~~rdeineev~elK~kR~ein~kl~eL~~~~~   93 (294)
T COG1340          62 EERDEINEEVQELKEKRDEINAKLQELRKEYR   93 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444443333333333333333

>KOG1003|consensus

Probab=96.99  E-value=0.22  Score=43.89  Aligned_cols=51  Identities=14%  Similarity=0.132  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHH
Q psy5601          88 EEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKC  144 (270)
Q Consensus        88 ~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~  144 (270)
                      ..|.-.+.+.+..+..+...-.+.+.      .++-|+-..-++...|+.++.++..
T Consensus        21 e~aqErl~~a~~KL~Eaeq~~dE~er------~~Kv~enr~~kdEE~~e~~e~qLkE   71 (205)
T KOG1003|consen   21 DRAQERLATALQKLEEAEQAADESER------GMKVIENRAQKLEEKMEAQEAQLKE   71 (205)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccHHHH------HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34444444444444333333333333      4455555556666677777777764

>KOG0977|consensus

Probab=96.95  E-value=0.13  Score=51.90  Aligned_cols=13  Identities=23%  Similarity=0.271  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHH
Q psy5601          96 AYKEENQKLKTKY  108 (270)
Q Consensus        96 ~l~een~rL~~~i  108 (270)
                      .++.=|.||...|
T Consensus        43 El~~LNDRLA~YI   55 (546)
T KOG0977|consen   43 ELQELNDRLAVYI   55 (546)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444455555555

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.95  E-value=0.37  Score=45.65  Aligned_cols=170  Identities=20%  Similarity=0.262  Sum_probs=114.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cc------------chhHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy5601          83 STANVEEWKKQLQAYKEENQKLKTKYIELEAT---KG------------VSEAAVELRKELTSVRSKNETLDSELKCRDE  147 (270)
Q Consensus        83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele~~---~~------------~~~~~~ele~e~~~l~~~~eele~eL~~~e~  147 (270)
                      ....-++++.-.+.++.+...|+..+.++.-.   .+            =...+.+.++.+..|...+..|...|.+.+.
T Consensus        21 cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG  100 (319)
T PF09789_consen   21 CQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG  100 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33445566666666666666666666665511   11            0124678889999999999999999999999


Q ss_pred             HHHHHHHhhHHhhhhhhhh---------HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH-
Q psy5601         148 EVKKLTNAKHAVEDKCKAA---------VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE-  217 (270)
Q Consensus       148 Eie~L~~qi~~LE~~~~ei---------pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~-  217 (270)
                      .|.-||.++......+.++         ..+=.+++.++..+..|+..++..-.+..++..+.+....++..+...+.- 
T Consensus       101 D~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~  180 (319)
T PF09789_consen  101 DIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYI  180 (319)
T ss_pred             hHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998877662222         224556677778888888888877777777777766666666666555443 


Q ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601         218 -------------LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAG  252 (270)
Q Consensus       218 -------------lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~  252 (270)
                                   +=..++-|..+|..++.+.+-+..-+...+..++.
T Consensus       181 L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~  228 (319)
T PF09789_consen  181 LNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER  228 (319)
T ss_pred             hCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                         44455556666666666666566666666666653

>KOG0980|consensus

Probab=96.88  E-value=0.79  Score=48.46  Aligned_cols=43  Identities=21%  Similarity=0.275  Sum_probs=29.2

Q ss_pred             hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601          68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIE  110 (270)
Q Consensus        68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~E  110 (270)
                      ++...++.+..+..++...+.+.+.++..+..+++.-+...++
T Consensus       341 e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe  383 (980)
T KOG0980|consen  341 EVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQE  383 (980)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4444556666667788888888888888887776665444433

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.82  E-value=0.66  Score=46.68  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q psy5601         136 ETLDSELKCRDEEVKKLTNAK  156 (270)
Q Consensus       136 eele~eL~~~e~Eie~L~~qi  156 (270)
                      ..|+..+...+.++..|+.++
T Consensus       214 ~~~~~~leeae~~l~~L~~e~  234 (522)
T PF05701_consen  214 EEWEKELEEAEEELEELKEEL  234 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444455555555544

Several sequences in this family are described as being myosin heavy chain-like.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=96.78  E-value=0.045  Score=44.74  Aligned_cols=61  Identities=26%  Similarity=0.347  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHH
Q psy5601         146 DEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED  206 (270)
Q Consensus       146 e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~  206 (270)
                      ..||-+|-...+++......+|.|..++..|..+.+.+=--++.+.+++.+|+..+.++..
T Consensus        50 ~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~  110 (120)
T PF12325_consen   50 REEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE  110 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            3344444444444444445555555555555555555544455555555555555544433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain

Probab=96.77  E-value=0.00026  Score=57.12  Aligned_cols=27  Identities=22%  Similarity=0.532  Sum_probs=23.8

Q ss_pred             CcccccccccccchhhhhHHHHHH----HHHhh
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLD   29 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~   29 (270)
                      |+|+|++++|+||+|+|  +||||    +...+
T Consensus        67 l~y~k~~p~Fh~w~~~~--~v~GLnF~Se~eA~   97 (111)
T cd01207          67 LKYNQATPTFHQWRDAR--QVYGLNFGSKEDAT   97 (111)
T ss_pred             ceeeecCCcceeeecCC--eEEeeccCCHHHHH
Confidence            78999999999999997  89999    66544

Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.73  E-value=0.00037  Score=73.62  Aligned_cols=177  Identities=19%  Similarity=0.267  Sum_probs=0.0

Q ss_pred             hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy5601          68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDE  147 (270)
Q Consensus        68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~  147 (270)
                      .+......|...+.+-......|..+|..+..+...++.++..--.     ...+++++-+..+...+.++..++.....
T Consensus       268 ~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~-----~~~EelEeaKKkL~~~L~el~e~le~~~~  342 (859)
T PF01576_consen  268 QLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAE-----QRTEELEEAKKKLERKLQELQEQLEEANA  342 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555544455555555555555555555555533111     01223333344444444444444333333


Q ss_pred             HHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5601         148 EVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQA  227 (270)
Q Consensus       148 Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~  227 (270)
                      .+..|.+....|.   +++..++..++........++...+..|..|.+++..++.+...++.+......+.+.|-.|..
T Consensus       343 ~~~~LeK~k~rL~---~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~  419 (859)
T PF01576_consen  343 KVSSLEKTKKRLQ---GELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKN  419 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            3333322222222   2333333444444444444444445555555555444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601         228 QLDTLLASQDAQRRIIDTLNHQLAG  252 (270)
Q Consensus       228 ~Lee~~~~~~~~~~El~~l~e~ld~  252 (270)
                      .++++......+..+.+.|...++.
T Consensus       420 ~lee~~e~~e~lere~k~L~~El~d  444 (859)
T PF01576_consen  420 ELEELQEQLEELERENKQLQDELED  444 (859)
T ss_dssp             -------------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4444444444444443333333333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.73  E-value=0.68  Score=46.97  Aligned_cols=70  Identities=16%  Similarity=0.242  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHhhHHhhhh----hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHH
Q psy5601         142 LKCRDEEVKKLTNAKHAVEDK----CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLL  211 (270)
Q Consensus       142 L~~~e~Eie~L~~qi~~LE~~----~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~  211 (270)
                      ....+.++..|.+++..+...    ......+..+...+...+..++.........|..|+..-.++..++...
T Consensus       350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~  423 (569)
T PRK04778        350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERY  423 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444433332    1224455566666666666666666666666666555533333333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.72  E-value=0.88  Score=47.47  Aligned_cols=30  Identities=17%  Similarity=0.240  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         220 AAISLVQAQLDTLLASQDAQRRIIDTLNHQ  249 (270)
Q Consensus       220 ~~i~~LE~~Lee~~~~~~~~~~El~~l~e~  249 (270)
                      ..+.+..++|+-+...+..-..|+..|+..
T Consensus       622 saLg~akrq~ei~~~~~~~~d~ei~~lk~k  651 (697)
T PF09726_consen  622 SALGDAKRQLEIAQGQLRKKDKEIEELKAK  651 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455666666666666566666655443

; GO: 0016021 integral to membrane

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.67  E-value=0.83  Score=46.80  Aligned_cols=85  Identities=14%  Similarity=0.285  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         166 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED--KCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRII  243 (270)
Q Consensus       166 ipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~--~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El  243 (270)
                      ......++..++..+..+...++.++..+..|..+.+.+..  -+.....|+-+.=.-|+--+.++...-.+-..+..++
T Consensus       442 ~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkei  521 (594)
T PF05667_consen  442 SKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEI  521 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455677788888888888888888888888877555443  2233334444433333333444444444444444444


Q ss_pred             HHHHHHH
Q psy5601         244 DTLNHQL  250 (270)
Q Consensus       244 ~~l~e~l  250 (270)
                      ..+.+.+
T Consensus       522 N~l~gkL  528 (594)
T PF05667_consen  522 NSLTGKL  528 (594)
T ss_pred             HHHHHHH
Confidence            4444443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.61  E-value=0.00051  Score=71.11  Aligned_cols=141  Identities=21%  Similarity=0.377  Sum_probs=0.0

Q ss_pred             hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh-----HHHHHHHHHhhhhhch-------
Q psy5601          68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSE-----AAVELRKELTSVRSKN-------  135 (270)
Q Consensus        68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~-----~~~ele~e~~~l~~~~-------  135 (270)
                      .+....+.|.--..+....|.....+...+..++..|...+..++.....++     ....+...+..+...+       
T Consensus       183 ~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~  262 (713)
T PF05622_consen  183 RLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQR  262 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444455555666666666666677777666665541111111     1222223333333333       


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHH---HHHH---hhhhHHHHHHHHHhhHHHHHHH
Q psy5601         136 ETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNET---LDSE---LKCRDEEVKKLTNAKHAVEDKC  208 (270)
Q Consensus       136 eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~---lE~~---l~~~d~el~~L~~e~e~l~~~~  208 (270)
                      +.++..+..++.++..|+.++.+|-..-..+..|+++++.++.+-++   +|..   ++.+=.++..++.++..|.++.
T Consensus       263 ~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N  341 (713)
T PF05622_consen  263 DDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDN  341 (713)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555666666777766666656777788888888775554   3332   2334444455555444444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.58  E-value=0.65  Score=43.46  Aligned_cols=38  Identities=11%  Similarity=0.152  Sum_probs=24.4

Q ss_pred             hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601         163 CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA  200 (270)
Q Consensus       163 ~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e  200 (270)
                      .+.++.|++..+-|.+.|..+++.+..++.+++.....
T Consensus       136 n~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trda  173 (305)
T PF14915_consen  136 NSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDA  173 (305)
T ss_pred             cchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666666777777777777777666666655443

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.54  E-value=0.72  Score=43.44  Aligned_cols=136  Identities=21%  Similarity=0.247  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q psy5601         120 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTN  199 (270)
Q Consensus       120 ~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~  199 (270)
                      .++.|++++..|+.....|..+-..+++.-..|-..+      ..+...-+.++..|.++|.+--........+|..|..
T Consensus       168 Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dc------v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls  241 (306)
T PF04849_consen  168 KLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDC------VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS  241 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHH------HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666666666666665555555544442222      3445555666667777777666666666777777777


Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5601         200 AKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIH  261 (270)
Q Consensus       200 e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~  261 (270)
                      ++-++..++..+...+.++-..+.....-=..+.....+++..-......+-.-..+|..+|
T Consensus       242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR  303 (306)
T PF04849_consen  242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR  303 (306)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            76666666666666666644444444443333444444444444444444444444444443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.53  E-value=1.2  Score=45.75  Aligned_cols=27  Identities=15%  Similarity=0.326  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601         241 RIIDTLNHQLAGRVAELATIHREINTA  267 (270)
Q Consensus       241 ~El~~l~e~ld~ki~eL~el~~~l~~~  267 (270)
                      ..++.-++..++-+.+...++++|..+
T Consensus       498 ~NI~KQk~eI~KIl~DTr~lQkeiN~l  524 (594)
T PF05667_consen  498 KNIRKQKEEIEKILSDTRELQKEINSL  524 (594)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555666666666666666543

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.52  E-value=0.93  Score=44.45  Aligned_cols=22  Identities=27%  Similarity=0.268  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy5601         223 SLVQAQLDTLLASQDAQRRIID  244 (270)
Q Consensus       223 ~~LE~~Lee~~~~~~~~~~El~  244 (270)
                      ..-+..++++......++.++.
T Consensus       220 ~~~q~~l~eL~~~~~~L~~~Ia  241 (420)
T COG4942         220 SADQKKLEELRANESRLKNEIA  241 (420)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHH
Confidence            3333333333333333333333

>KOG0964|consensus

Probab=96.49  E-value=1.5  Score=46.93  Aligned_cols=89  Identities=21%  Similarity=0.306  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         169 LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNH  248 (270)
Q Consensus       169 l~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e  248 (270)
                      .+.+...|..+|.++++.+..++++|+.+...+.++..++.       .+-..+-++..+++++...+.++=.|=..|..
T Consensus       409 ~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~-------~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~  481 (1200)
T KOG0964|consen  409 TKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRME-------EFDAENTELKRELDELQDKRKELWREEKKLRS  481 (1200)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444333333333332       23333344444455555555555555555555


Q ss_pred             HHhHHHHHHHHHHHHH
Q psy5601         249 QLAGRVAELATIHREI  264 (270)
Q Consensus       249 ~ld~ki~eL~el~~~l  264 (270)
                      .++.+..+|....+.|
T Consensus       482 ~i~~~~~dl~~~~~~L  497 (1200)
T KOG0964|consen  482 LIANLEEDLSRAEKNL  497 (1200)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555555554444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.47  E-value=0.81  Score=43.19  Aligned_cols=87  Identities=16%  Similarity=0.174  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHHHHHhhHHHHHHhhhh----HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         165 AAVELRKELTSVRSKNETLDSELKCR----DEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQR  240 (270)
Q Consensus       165 eipel~~e~~~L~~~l~~lE~~l~~~----d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~  240 (270)
                      -.|.+......|..++..+.......    ..+|..++.++..+..++......+.+++.++..++..++++.....++.
T Consensus       178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~  257 (325)
T PF08317_consen  178 LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELL  257 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666554443321    13455555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHh
Q psy5601         241 RIIDTLNHQLA  251 (270)
Q Consensus       241 ~El~~l~e~ld  251 (270)
                      .++..+...++
T Consensus       258 ~eI~e~~~~~~  268 (325)
T PF08317_consen  258 AEIAEAEKIRE  268 (325)
T ss_pred             HHHHHHHHHHH
Confidence            55555554443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.46  E-value=0.33  Score=45.86  Aligned_cols=134  Identities=22%  Similarity=0.287  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Q psy5601          85 ANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCK  164 (270)
Q Consensus        85 a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~  164 (270)
                      +-==.|..++  +.+=...|...+..+.+      ....|....+-+..-+..+......+..|+..|++...+++.-+ 
T Consensus       132 ~~WYeWR~kl--legLk~~L~~~~~~l~~------D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d-  202 (312)
T smart00787      132 KMWYEWRMKL--LEGLKEGLDENLEGLKE------DYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD-  202 (312)
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC-
Confidence            3334566665  44444444444444443      22222233333444444555555555566666665554444311 


Q ss_pred             hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601         165 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL  232 (270)
Q Consensus       165 eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~  232 (270)
                           .++...++.+|..+...+..+...+.+++.++..+...++....++.++...|..++..++..
T Consensus       203 -----~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~  265 (312)
T smart00787      203 -----PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQC  265 (312)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                 123455566666666666666666666666666666666666666666666666666655443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.44  E-value=0.91  Score=46.08  Aligned_cols=70  Identities=19%  Similarity=0.236  Sum_probs=32.1

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHhhccc------hhHHHHHHHHHhhhhh-----chHHHHHHHHHHHHHHHHHHH
Q psy5601          87 VEEWKKQLQA-YKEENQKLKTKYIELEATKGV------SEAAVELRKELTSVRS-----KNETLDSELKCRDEEVKKLTN  154 (270)
Q Consensus        87 v~~wk~qL~~-l~een~rL~~~i~Ele~~~~~------~~~~~ele~e~~~l~~-----~~eele~eL~~~e~Eie~L~~  154 (270)
                      |..+=.++.. +=+....|..-+.++..+|-.      +..+..|...+.....     .++..+..+..+...|+.|-.
T Consensus       217 iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd  296 (569)
T PRK04778        217 IPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYD  296 (569)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            3333333333 345666666667776654432      2244444444444211     333444444445555554443


Q ss_pred             hh
Q psy5601         155 AK  156 (270)
Q Consensus       155 qi  156 (270)
                      .+
T Consensus       297 ~l  298 (569)
T PRK04778        297 IL  298 (569)
T ss_pred             HH
Confidence            33

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.42  E-value=1.2  Score=45.78  Aligned_cols=112  Identities=13%  Similarity=0.126  Sum_probs=54.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhH
Q psy5601         134 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQ  213 (270)
Q Consensus       134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~  213 (270)
                      ++.+++..+..+........+-++.+.+....|.---+++-.|+..|.+++.....+-.       +.-++...++....
T Consensus       123 rL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltn-------e~~elt~~lq~Eq~  195 (617)
T PF15070_consen  123 RLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTN-------ENMELTSALQSEQH  195 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------hhhHhhHHHHHHHH
Confidence            44455555555444444444444444444444444555556666666665554443322       22223344444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601         214 ENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAG  252 (270)
Q Consensus       214 r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~  252 (270)
                      -+.++..++..++..|..++..+..-..++..|..+++.
T Consensus       196 ~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq  234 (617)
T PF15070_consen  196 VKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQ  234 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            444455555555555555555555444555555554443

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=96.41  E-value=0.53  Score=40.40  Aligned_cols=20  Identities=35%  Similarity=0.390  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy5601          93 QLQAYKEENQKLKTKYIELE  112 (270)
Q Consensus        93 qL~~l~een~rL~~~i~Ele  112 (270)
                      ++..++-+|..|..+|.+.+
T Consensus        43 DFeqLkien~~l~~kIeERn   62 (177)
T PF13870_consen   43 DFEQLKIENQQLNEKIEERN   62 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=96.40  E-value=0.16  Score=41.46  Aligned_cols=29  Identities=24%  Similarity=0.276  Sum_probs=20.7

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601         133 SKNETLDSELKCRDEEVKKLTNAKHAVED  161 (270)
Q Consensus       133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~  161 (270)
                      .-|+.+.+.|..++.|+..++.++..|+.
T Consensus        16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~   44 (120)
T PF12325_consen   16 QLVERLQSQLRRLEGELASLQEELARLEA   44 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677888888888888777777755544

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG4643|consensus

Probab=96.40  E-value=1.8  Score=46.48  Aligned_cols=62  Identities=18%  Similarity=0.230  Sum_probs=28.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5601         204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINT  266 (270)
Q Consensus       204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~  266 (270)
                      |...+-.++.+|+.|-.+|..|... .......+..=..+......+...++.|..+++..-+
T Consensus       535 Le~~l~~lE~ENa~LlkqI~~Lk~t-~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~  596 (1195)
T KOG4643|consen  535 LEELLGNLEEENAHLLKQIQSLKTT-SQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEK  596 (1195)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHH-hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444444332 1222233333345555566666777777776555433

>KOG0978|consensus

Probab=96.40  E-value=1.5  Score=45.55  Aligned_cols=102  Identities=15%  Similarity=0.189  Sum_probs=69.4

Q ss_pred             hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH-------HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         165 AAVELRKELTSVRSKNETLDSELKCRDEEVKKL-------TNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQD  237 (270)
Q Consensus       165 eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L-------~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~  237 (270)
                      .+..+...++.+...|..+|..++........+       ..-++.....+..+......|...+...+..|+.++....
T Consensus       511 ~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~  590 (698)
T KOG0978|consen  511 QILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYA  590 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444554444444333333333       3336666667777777777788888888888888888888


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5601         238 AQRRIIDTLNHQLAGRVAELATIHREINT  266 (270)
Q Consensus       238 ~~~~El~~l~e~ld~ki~eL~el~~~l~~  266 (270)
                      .+..+|..+...+-....++..+|+.|.+
T Consensus       591 e~~~ele~~~~k~~rleEE~e~L~~kle~  619 (698)
T KOG0978|consen  591 ELELELEIEKFKRKRLEEELERLKRKLER  619 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888887765

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.38  E-value=0.049  Score=47.62  Aligned_cols=79  Identities=20%  Similarity=0.252  Sum_probs=26.3

Q ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5601         176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRV  254 (270)
Q Consensus       176 L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki  254 (270)
                      +...+..++..+......|..|..++..+..++..+...+.+....|..+..++..+.-....++..+..+..+-..++
T Consensus       100 ~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv  178 (194)
T PF08614_consen  100 LNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV  178 (194)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444444444444444444444444444444444444444444443433333433333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.36  E-value=2.2  Score=47.07  Aligned_cols=115  Identities=23%  Similarity=0.289  Sum_probs=61.6

Q ss_pred             hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH-HHhh
Q psy5601          78 SALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKL-TNAK  156 (270)
Q Consensus        78 ~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L-~~qi  156 (270)
                      .+..........|+..+..+..+..++...+.+...         ++..+...+.+.+...+..|+..+..-..- ...|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~---------~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i  344 (1201)
T PF12128_consen  274 ADEQQLEQEQPELKEELNELNEELEKLEDEIKELRD---------ELNKELSALNADLARIKSELDEIEQQKKDYEDADI  344 (1201)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence            333444444555555555555555555555544322         111222223333333333333222222221 1134


Q ss_pred             HHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhh
Q psy5601         157 HAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK  201 (270)
Q Consensus       157 ~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~  201 (270)
                      ..+....+..|.+..+++.+...+..|.+...++....+.+...+
T Consensus       345 ~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l  389 (1201)
T PF12128_consen  345 EQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKL  389 (1201)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444677788888888888888888888888888877776663

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.34  E-value=0.061  Score=47.05  Aligned_cols=33  Identities=12%  Similarity=0.256  Sum_probs=0.0

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601          81 QESTANVEEWKKQLQAYKEENQKLKTKYIELEA  113 (270)
Q Consensus        81 ~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~  113 (270)
                      ......+..|..+|..+...+..+..+|..+..
T Consensus        70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~  102 (194)
T PF08614_consen   70 SSLEQKLAKLQEELAELYRSKGELAQQLVELND  102 (194)
T ss_dssp             ---------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence            344455666666666666666666666665553

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=96.28  E-value=1.3  Score=43.75  Aligned_cols=117  Identities=12%  Similarity=0.171  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-hccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-h--
Q psy5601          88 EEWKKQLQAYKEENQKLKTKYIELEA-TKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-C--  163 (270)
Q Consensus        88 ~~wk~qL~~l~een~rL~~~i~Ele~-~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~--  163 (270)
                      .=+..++..++.+......++..-.. ++...+      +....+..++..+..++...+.++..++.++..+... .  
T Consensus       164 ~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~------~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~  237 (498)
T TIGR03007       164 RFIDEQIKTYEKKLEAAENRLKAFKQENGGILP------DQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGE  237 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCc------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            33456666666666666666665432 221111      0111222344444444444444444444444444432 1  


Q ss_pred             ---------hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHH
Q psy5601         164 ---------KAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKL  210 (270)
Q Consensus       164 ---------~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~  210 (270)
                               ..+..+..++..++.++..+-.++.+....+..++.+++.+...+..
T Consensus       238 ~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~  293 (498)
T TIGR03007       238 EPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE  293 (498)
T ss_pred             CCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence                     11234667777777777777777776666777776666666555433

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0979|consensus

Probab=96.23  E-value=1  Score=48.22  Aligned_cols=97  Identities=14%  Similarity=0.273  Sum_probs=53.5

Q ss_pred             HHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h--ccchhHHHHHHHHHhhhhhchHHHH
Q psy5601          65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEA---T--KGVSEAAVELRKELTSVRSKNETLD  139 (270)
Q Consensus        65 el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~---~--~~~~~~~~ele~e~~~l~~~~eele  139 (270)
                      +|-+|+.....|-.++...+.-+.+++..++.|....++++.+-.-+..   +  ...--.-+....+...+...++.++
T Consensus       182 eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k  261 (1072)
T KOG0979|consen  182 ELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAK  261 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHH
Confidence            5667777777777777777666677666666666665555544321110   0  0000011222334455555666666


Q ss_pred             HHHHHHHHHHHHHHHhhHHhhh
Q psy5601         140 SELKCRDEEVKKLTNAKHAVED  161 (270)
Q Consensus       140 ~eL~~~e~Eie~L~~qi~~LE~  161 (270)
                      .++..+..++..+...+++|+.
T Consensus       262 ~~~r~l~k~~~pi~~~~eeLe~  283 (1072)
T KOG0979|consen  262 KELRKLEKEIKPIEDKKEELES  283 (1072)
T ss_pred             HHHHHHHHhhhhhhhhhhhHHh
Confidence            6666666666666666655554

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.17  E-value=1.9  Score=44.54  Aligned_cols=155  Identities=17%  Similarity=0.267  Sum_probs=70.3

Q ss_pred             hhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q psy5601          69 LKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEE  148 (270)
Q Consensus        69 Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~E  148 (270)
                      |.-+|..+.--.......++....++...+..-.++...|..++             +....++..++.+..++..+..|
T Consensus       497 LslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Le-------------e~~~~Lrneles~~eel~~k~~E  563 (786)
T PF05483_consen  497 LSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLE-------------ETNTQLRNELESVKEELKQKGEE  563 (786)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444433444445555555555555555555555555554             33444555555555555544444


Q ss_pred             HHHHHHhhHHhhh-hhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5601         149 VKKLTNAKHAVED-KCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQA  227 (270)
Q Consensus       149 ie~L~~qi~~LE~-~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~  227 (270)
                      +...-...++--. ...++.....++-.+...+..|.+.+.++..-|..|..+..-|..++-....+...++.+|..|+.
T Consensus       564 v~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~  643 (786)
T PF05483_consen  564 VKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQE  643 (786)
T ss_pred             HHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4432222111000 012222233333344444444444444444444444444444444444444444445555555555


Q ss_pred             HHHHHHHHH
Q psy5601         228 QLDTLLASQ  236 (270)
Q Consensus       228 ~Lee~~~~~  236 (270)
                      +++.++...
T Consensus       644 E~e~~kk~~  652 (786)
T PF05483_consen  644 ELENLKKKH  652 (786)
T ss_pred             HHHHHHhHH
Confidence            555555433

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=96.13  E-value=0.31  Score=45.06  Aligned_cols=65  Identities=12%  Similarity=0.170  Sum_probs=50.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5601         193 EVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAEL  257 (270)
Q Consensus       193 el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL  257 (270)
                      +...|...|+.+....+.+......-+..|.-|+++|...+...+.+..+++.++..+++-....
T Consensus        68 Enq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~  132 (307)
T PF10481_consen   68 ENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA  132 (307)
T ss_pred             hhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33334445666677777777777778888999999999999999999999999999888655443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0612|consensus

Probab=96.11  E-value=1.7  Score=47.60  Aligned_cols=30  Identities=10%  Similarity=0.215  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         219 QAAISLVQAQLDTLLASQDAQRRIIDTLNH  248 (270)
Q Consensus       219 E~~i~~LE~~Lee~~~~~~~~~~El~~l~e  248 (270)
                      -..+..++.++..++..+.+...++..+.+
T Consensus       622 ~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e  651 (1317)
T KOG0612|consen  622 SEIIAELKEEISSLEETLKAGKKELLKVEE  651 (1317)
T ss_pred             HHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence            333444444444444444444444444443

>KOG0946|consensus

Probab=96.05  E-value=2.4  Score=44.64  Aligned_cols=48  Identities=8%  Similarity=0.060  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601         218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREIN  265 (270)
Q Consensus       218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~  265 (270)
                      .+.++-++...+.+...+..++..++..++++...++.....+-+.+.
T Consensus       790 ~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le  837 (970)
T KOG0946|consen  790 DQEQVIELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLE  837 (970)
T ss_pred             hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence            445555555557777777777777888888888777777777665554

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.03  E-value=0.0017  Score=68.76  Aligned_cols=165  Identities=20%  Similarity=0.258  Sum_probs=0.0

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601          81 QESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE  160 (270)
Q Consensus        81 ~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE  160 (270)
                      .++.+.+..|+.-...+..++..+...+....+      ....++.....+...+.+|+..+.....+.+.+......+.
T Consensus       338 e~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~------~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~  411 (859)
T PF01576_consen  338 EEANAKVSSLEKTKKRLQGELEDLTSELEKAQA------AAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELE  411 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            334444555555555555555555544444333      23333344444555555555555555555555444444443


Q ss_pred             hhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy5601         161 DKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKH-------AVEDKCKLLSQENAELQAAISLVQAQLDTLL  233 (270)
Q Consensus       161 ~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e-------~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~  233 (270)
                      .   ++-.|+..++.+...+..++..-..+..+|.+|...+.       +|...+-.++..+.++...+.+++..|....
T Consensus       412 t---e~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E  488 (859)
T PF01576_consen  412 T---ELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEE  488 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             H---HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   44445555555555666665555555555555544432       2333444445555555555555556666555


Q ss_pred             HHHHHHHHHHHHHHHHHhHHH
Q psy5601         234 ASQDAQRRIIDTLNHQLAGRV  254 (270)
Q Consensus       234 ~~~~~~~~El~~l~e~ld~ki  254 (270)
                      ...-.+..+|..++..++..+
T Consensus       489 ~~~lRl~~el~~~r~e~er~l  509 (859)
T PF01576_consen  489 QKKLRLQVELQQLRQEIEREL  509 (859)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            566666666666655554433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=96.01  E-value=0.57  Score=42.67  Aligned_cols=116  Identities=28%  Similarity=0.388  Sum_probs=74.2

Q ss_pred             hHHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHH
Q psy5601          62 WEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSE  141 (270)
Q Consensus        62 ~E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~e  141 (270)
                      .+..|..+...+.+-..+|.++..-+..+..++...+.+...|.....+++.      ....|.........+-..|..+
T Consensus        10 le~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee------~~~rL~~~~~~~~eEk~~Le~e   83 (246)
T PF00769_consen   10 LEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEE------EKQRLEEEAEMQEEEKEQLEQE   83 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH------------HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3455778888888888999999999999999999999988888888887776      5555556665555666677777


Q ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHH
Q psy5601         142 LKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSE  186 (270)
Q Consensus       142 L~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~  186 (270)
                      +..++.+|..|...+..-+.   +...+..++...+..+...-..
T Consensus        84 ~~e~~~~i~~l~ee~~~ke~---Ea~~lq~el~~ar~~~~~ak~~  125 (246)
T PF00769_consen   84 LREAEAEIARLEEESERKEE---EAEELQEELEEAREDEEEAKEE  125 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777776644443   4445555555555544444333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.98  E-value=1  Score=39.70  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHH
Q psy5601         136 ETLDSELKCRDEEVKKLTNAKHA  158 (270)
Q Consensus       136 eele~eL~~~e~Eie~L~~qi~~  158 (270)
                      -.++..+...+.++.+++..+..
T Consensus        85 r~~~~klk~~~~el~k~~~~l~~  107 (194)
T PF15619_consen   85 RELERKLKDKDEELLKTKDELKH  107 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444433

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.97  E-value=2.3  Score=44.91  Aligned_cols=142  Identities=20%  Similarity=0.313  Sum_probs=78.5

Q ss_pred             HHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-----------hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHH
Q psy5601         125 RKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-----------CKAAVELRKELTSVRSKNETLDSELKCRDEE  193 (270)
Q Consensus       125 e~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-----------~~eipel~~e~~~L~~~l~~lE~~l~~~d~e  193 (270)
                      ..+...+...-..++..+..+...++.++.++.+++..           ..--.....++......+..++.++...+.+
T Consensus       595 ~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E  674 (769)
T PF05911_consen  595 EEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAE  674 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            34444444444444444444444444444444433321           0111223445555566666666666666777


Q ss_pred             HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhHHHHHHHHHHH
Q psy5601         194 VKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQ-----------RRIIDTLNHQLAGRVAELATIHR  262 (270)
Q Consensus       194 l~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~-----------~~El~~l~e~ld~ki~eL~el~~  262 (270)
                      ++.+...+..|..+++..-.--.++..+-.+|+.+|+.........           ..||....+.|..=...|..|-+
T Consensus       675 ~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGk  754 (769)
T PF05911_consen  675 AEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGK  754 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777666666666666665555566667777777776665433211           33666666667666677777766


Q ss_pred             HHHH
Q psy5601         263 EINT  266 (270)
Q Consensus       263 ~l~~  266 (270)
                      .|-.
T Consensus       755 QLks  758 (769)
T PF05911_consen  755 QLKS  758 (769)
T ss_pred             HHHh
Confidence            6643

The function of this family is unknown.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.97  E-value=2.6  Score=44.15  Aligned_cols=88  Identities=19%  Similarity=0.226  Sum_probs=52.3

Q ss_pred             HHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHH---
Q psy5601          63 EIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLD---  139 (270)
Q Consensus        63 E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele---  139 (270)
                      |..|+.--+-.+.+..-+.+..+.+++.+..+...+.+|++|...+.++..      ..+.++.++..|+..|.+++   
T Consensus        19 e~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~------~~~~~e~~~~~lr~e~ke~K~rE   92 (717)
T PF09730_consen   19 ESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRK------ECEDLELERKRLREEIKEYKFRE   92 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            333443333344566666777888888888888888888888888877765      33334444444444443333   


Q ss_pred             ----HHHHHHHHHHHHHHHhh
Q psy5601         140 ----SELKCRDEEVKKLTNAK  156 (270)
Q Consensus       140 ----~eL~~~e~Eie~L~~qi  156 (270)
                          .+..++++|+-.|+++|
T Consensus        93 ~rll~dyselEeENislQKqv  113 (717)
T PF09730_consen   93 ARLLQDYSELEEENISLQKQV  113 (717)
T ss_pred             HHHhhhhHHHHHHHHHHHHHH
Confidence                33344555555555555

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.95  E-value=0.0019  Score=66.93  Aligned_cols=40  Identities=25%  Similarity=0.435  Sum_probs=0.0

Q ss_pred             HhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy5601          66 LANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLK  105 (270)
Q Consensus        66 l~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~  105 (270)
                      +..|+..+.++..++.+....+...+.++..++.+|..|.
T Consensus       248 l~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~  287 (713)
T PF05622_consen  248 LRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQ  287 (713)
T ss_dssp             ----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555444444444444444444444444444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.93  E-value=0.76  Score=37.76  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=14.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy5601         204 VEDKCKLLSQENAELQAAISLVQAQLD  230 (270)
Q Consensus       204 l~~~~e~~~~r~~~lE~~i~~LE~~Le  230 (270)
                      +...+..+..|+.+|..++.-|..+|+
T Consensus       103 le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen  103 LEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444555555555555555555555554

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.92  E-value=3.4  Score=46.30  Aligned_cols=69  Identities=14%  Similarity=0.114  Sum_probs=36.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHH
Q psy5601         135 NETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA  203 (270)
Q Consensus       135 ~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~  203 (270)
                      +..+...+.++...+..+.-....+-.-...+|....+++.+...+...+.++.....++..+..++..
T Consensus       846 l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~  914 (1353)
T TIGR02680       846 LEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRT  914 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555544444433344556666666666666665555555555555555444333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG1003|consensus

Probab=95.92  E-value=1.1  Score=39.59  Aligned_cols=100  Identities=14%  Similarity=0.229  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q psy5601         169 LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLV-------QAQLDTLLASQDAQRR  241 (270)
Q Consensus       169 l~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~L-------E~~Lee~~~~~~~~~~  241 (270)
                      +...++...++.+..++.+..+..+++.+......++..-+.+..+....+..|+.+       +..-+-+..++..+..
T Consensus        93 iE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLek  172 (205)
T KOG1003|consen   93 IEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEK  172 (205)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcc
Confidence            334444444555555555566666666665555444444444444444433333333       3333334444444444


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy5601         242 IIDTLNHQLAGRVAELATIHREINTAL  268 (270)
Q Consensus       242 El~~l~e~ld~ki~eL~el~~~l~~~~  268 (270)
                      ++..|...+......+..+++.|-..+
T Consensus       173 e~DdlE~kl~~~k~ky~~~~~eLD~~~  199 (205)
T KOG1003|consen  173 ERDDLEEKLEEAKEKYEEAKKELDETL  199 (205)
T ss_pred             cHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            444444444445555555555554443

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=95.87  E-value=1.7  Score=43.27  Aligned_cols=27  Identities=22%  Similarity=0.201  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601          87 VEEWKKQLQAYKEENQKLKTKYIELEA  113 (270)
Q Consensus        87 v~~wk~qL~~l~een~rL~~~i~Ele~  113 (270)
                      +--+-.++++++..|.+|-..|.+...
T Consensus       266 ~~~i~~~i~~lk~~n~~l~e~i~ea~k  292 (622)
T COG5185         266 VHIINTDIANLKTQNDNLYEKIQEAMK  292 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444566788888999998888887663

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.86  E-value=2.8  Score=43.89  Aligned_cols=69  Identities=19%  Similarity=0.233  Sum_probs=34.4

Q ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601          79 ALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA  158 (270)
Q Consensus        79 al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~  158 (270)
                      -|+++.+--..+...|..++.+.-+++..+....             .++..|.....++.......+.+...|+..|.+
T Consensus        21 Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~-------------~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke   87 (717)
T PF09730_consen   21 LLQESASKEAYLQQRILELENELKQLRQELSNVQ-------------AENERLSQLNQELRKECEDLELERKRLREEIKE   87 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455655556666666666666655555554333             233333344444444444444444445554444


Q ss_pred             hh
Q psy5601         159 VE  160 (270)
Q Consensus       159 LE  160 (270)
                      +.
T Consensus        88 ~K   89 (717)
T PF09730_consen   88 YK   89 (717)
T ss_pred             HH
Confidence            43

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.85  E-value=1.5  Score=40.54  Aligned_cols=30  Identities=10%  Similarity=0.264  Sum_probs=13.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601          83 STANVEEWKKQLQAYKEENQKLKTKYIELE  112 (270)
Q Consensus        83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele  112 (270)
                      +..++..+..+|+.+......+..++.+..
T Consensus        43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~   72 (265)
T COG3883          43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQ   72 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444433

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=95.78  E-value=1.5  Score=39.85  Aligned_cols=25  Identities=28%  Similarity=0.232  Sum_probs=12.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601         135 NETLDSELKCRDEEVKKLTNAKHAV  159 (270)
Q Consensus       135 ~eele~eL~~~e~Eie~L~~qi~~L  159 (270)
                      +-.+...|.....+.+.|+.+|..+
T Consensus        22 L~~~~~~l~~~~~~~~~l~~~i~~~   46 (302)
T PF10186_consen   22 LLELRSELQQLKEENEELRRRIEEI   46 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.77  E-value=0.78  Score=39.50  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q psy5601         136 ETLDSELKCRDEEVKKLTNAK  156 (270)
Q Consensus       136 eele~eL~~~e~Eie~L~~qi  156 (270)
                      ..+...+..+..|+..+...+
T Consensus        84 ~~~~~~l~~l~~el~~l~~~~  104 (191)
T PF04156_consen   84 SELQQQLQQLQEELDQLQERI  104 (191)
T ss_pred             HhHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.70  E-value=1.1  Score=42.46  Aligned_cols=88  Identities=10%  Similarity=0.133  Sum_probs=50.8

Q ss_pred             hhhhHHHHHHHHHHHHhhHHHHHHhhhh----HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         163 CKAAVELRKELTSVRSKNETLDSELKCR----DEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDA  238 (270)
Q Consensus       163 ~~eipel~~e~~~L~~~l~~lE~~l~~~----d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~  238 (270)
                      ++-.|.+......|..++..|...-...    ..++..++.++..+..++........+++.++..+...+++......+
T Consensus       171 ~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e  250 (312)
T smart00787      171 NSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSE  250 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455777777777777776655444433    225555555555555555555555555666666666666666666555


Q ss_pred             HHHHHHHHHHHH
Q psy5601         239 QRRIIDTLNHQL  250 (270)
Q Consensus       239 ~~~El~~l~e~l  250 (270)
                      +..++..+...+
T Consensus       251 ~~~~I~~ae~~~  262 (312)
T smart00787      251 LNTEIAEAEKKL  262 (312)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG1029|consensus

Probab=95.67  E-value=1.4  Score=46.24  Aligned_cols=40  Identities=8%  Similarity=0.155  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5601         218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAEL  257 (270)
Q Consensus       218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL  257 (270)
                      ++.++..+..+.+.+....+-+...++.|++....++-..
T Consensus       547 ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lak  586 (1118)
T KOG1029|consen  547 IKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAK  586 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555555555555544433

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=95.66  E-value=0.94  Score=42.00  Aligned_cols=149  Identities=15%  Similarity=0.178  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh----
Q psy5601          87 VEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK----  162 (270)
Q Consensus        87 v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~----  162 (270)
                      |..++.+++.++.++.+-.=.|.-+++      .+.--....+..+.+...|+.+...+-+..++|.+....|.-.    
T Consensus        20 IqelE~QldkLkKE~qQrQfQleSlEA------aLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~K   93 (307)
T PF10481_consen   20 IQELEQQLDKLKKERQQRQFQLESLEA------ALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVK   93 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhh
Confidence            566666777777766665555655555      3322222223333344444444444444444444433333322    


Q ss_pred             hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH------------------HHHHHHH
Q psy5601         163 CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE------------------LQAAISL  224 (270)
Q Consensus       163 ~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~------------------lE~~i~~  224 (270)
                      .+.+.-+.-++..-...|+       .++.+|..++.+++....-.......+.-                  ...+.++
T Consensus        94 e~qv~~lEgQl~s~Kkqie-------~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~  166 (307)
T PF10481_consen   94 ESQVNFLEGQLNSCKKQIE-------KLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEE  166 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHH
Confidence            3333333333333333333       33444444444444333322222211111                  3456666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         225 VQAQLDTLLASQDAQRRIIDTLNH  248 (270)
Q Consensus       225 LE~~Lee~~~~~~~~~~El~~l~e  248 (270)
                      |+.....--.....++.|++.|.-
T Consensus       167 L~ekynkeveerkrle~e~k~lq~  190 (307)
T PF10481_consen  167 LQEKYNKEVEERKRLEAEVKALQA  190 (307)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhc
Confidence            666666666666777777777763

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.58  E-value=5.3  Score=44.85  Aligned_cols=16  Identities=6%  Similarity=-0.058  Sum_probs=6.6

Q ss_pred             hHHHHHHHHHHHHhhH
Q psy5601         166 AVELRKELTSVRSKNE  181 (270)
Q Consensus       166 ipel~~e~~~L~~~l~  181 (270)
                      .+.+...++.....+.
T Consensus       846 l~~~~~aL~~y~~~l~  861 (1353)
T TIGR02680       846 LEAVGLALKRFGDHLH  861 (1353)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.56  E-value=1.6  Score=38.67  Aligned_cols=27  Identities=19%  Similarity=0.187  Sum_probs=12.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         211 LSQENAELQAAISLVQAQLDTLLASQD  237 (270)
Q Consensus       211 ~~~r~~~lE~~i~~LE~~Lee~~~~~~  237 (270)
                      .+-++--|+.++..|...|+.....+.
T Consensus       141 ~~~kn~lLEkKl~~l~~~lE~keaqL~  167 (201)
T PF13851_consen  141 TGLKNLLLEKKLQALSEQLEKKEAQLN  167 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555554444444

>KOG0999|consensus

Probab=95.53  E-value=3.2  Score=42.11  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=18.8

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q psy5601         129 TSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK  162 (270)
Q Consensus       129 ~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~  162 (270)
                      +.+-..|-+|+.+|..+..++.+.+...+.++..
T Consensus       103 ~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~  136 (772)
T KOG0999|consen  103 EYYLQKILELENELKQLRQELTNVQEENERLEKV  136 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455556666666555555555555555544

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=95.50  E-value=0.26  Score=36.87  Aligned_cols=69  Identities=20%  Similarity=0.327  Sum_probs=56.5

Q ss_pred             HHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601         183 LDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA  251 (270)
Q Consensus       183 lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld  251 (270)
                      ++..|..+|..|..|+.+.+.|+..--...+-+..|...+..++..+..+..+.+....++..|...+.
T Consensus         3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~   71 (74)
T PF12329_consen    3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK   71 (74)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            566788899999999999888888888888888888888888888888888888877777777776654

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=95.45  E-value=0.86  Score=40.50  Aligned_cols=20  Identities=20%  Similarity=0.278  Sum_probs=9.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHH
Q psy5601         243 IDTLNHQLAGRVAELATIHR  262 (270)
Q Consensus       243 l~~l~e~ld~ki~eL~el~~  262 (270)
                      +..|....+.+..+|...|+
T Consensus       133 ~~~l~~e~erL~aeL~~er~  152 (202)
T PF06818_consen  133 LGSLRREVERLRAELQRERQ  152 (202)
T ss_pred             chhHHHHHHHHHHHHHHHHH
Confidence            34444445555555554444

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG1853|consensus

Probab=95.44  E-value=2.1  Score=39.42  Aligned_cols=22  Identities=9%  Similarity=-0.070  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhh
Q psy5601         169 LRKELTSVRSKNETLDSELKCR  190 (270)
Q Consensus       169 l~~e~~~L~~~l~~lE~~l~~~  190 (270)
                      ....+++++.-|..||-+-+++
T Consensus       103 t~aikeql~kyiReLEQaNDdL  124 (333)
T KOG1853|consen  103 THAIKEQLRKYIRELEQANDDL  124 (333)
T ss_pred             HHHHHHHHHHHHHHHHHhccHH
Confidence            3444444555555554444443

>PF15294 Leu_zip: Leucine zipper

Probab=95.34  E-value=2  Score=39.95  Aligned_cols=101  Identities=24%  Similarity=0.284  Sum_probs=60.2

Q ss_pred             hHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhccchhH---HH----HHHHHHhhhhhchHHHHHHHHHHHHHHH
Q psy5601          80 LQESTANVEEW--KKQLQAYKEENQKLKTKYIELEATKGVSEA---AV----ELRKELTSVRSKNETLDSELKCRDEEVK  150 (270)
Q Consensus        80 l~Es~a~v~~w--k~qL~~l~een~rL~~~i~Ele~~~~~~~~---~~----ele~e~~~l~~~~eele~eL~~~e~Eie  150 (270)
                      |...-....+|  +-+...-.-+|..|-..|.+.+.+....+.   ..    -|...++.  ...+-+..+|.++..|..
T Consensus        65 lrql~~qAek~~lkl~~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~--g~~~ll~kEi~rLq~EN~  142 (278)
T PF15294_consen   65 LRQLFSQAEKWYLKLQTDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNES--GGSELLNKEIDRLQEENE  142 (278)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccccc--chHHHHHHHHHHHHHHHH
Confidence            36666777888  545445555777788888877654322111   00    01111111  223458899999999999


Q ss_pred             HHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHH
Q psy5601         151 KLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDS  185 (270)
Q Consensus       151 ~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~  185 (270)
                      .|+.++..++..|...   ..+...|...|.++..
T Consensus       143 kLk~rl~~le~~at~~---l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  143 KLKERLKSLEKQATSA---LDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            9999999999875443   3334444455554444

>TIGR00634 recN DNA repair protein RecN

Probab=95.33  E-value=3.7  Score=41.56  Aligned_cols=55  Identities=15%  Similarity=0.129  Sum_probs=37.3

Q ss_pred             hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhh
Q psy5601          78 SALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVR  132 (270)
Q Consensus        78 ~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~  132 (270)
                      ..+.+......++.........+.+.|+-+|.++++..-.|.+.++|+.+...|.
T Consensus       168 ~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~  222 (563)
T TIGR00634       168 QAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLS  222 (563)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHh
Confidence            3344455555666666666777778888888888887777777777777665554

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>KOG0994|consensus

Probab=95.30  E-value=5.8  Score=43.59  Aligned_cols=16  Identities=31%  Similarity=0.324  Sum_probs=10.0

Q ss_pred             hhhhhHHHHHH----HHHhh
Q psy5601          14 SDIRANTVSLV----QAQLD   29 (270)
Q Consensus        14 ad~~an~~~~~----~~~l~   29 (270)
                      |-++||-.++.    +++|.
T Consensus      1406 a~t~A~~A~~~A~~~~~~l~ 1425 (1758)
T KOG0994|consen 1406 AVTRAGGALLMAGDADTQLR 1425 (1758)
T ss_pred             hhcccchHHHHhhhHHHHHH
Confidence            45677777776    44554

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=95.18  E-value=0.29  Score=44.22  Aligned_cols=75  Identities=15%  Similarity=0.173  Sum_probs=59.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601         193 EVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA  267 (270)
Q Consensus       193 el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~  267 (270)
                      ++.+++...+++..+++.+...+.++-..+..++.++++.+.+..+++.+...|.+.++.+..++..+++-+..|
T Consensus       129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL  203 (290)
T COG4026         129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL  203 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence            344566667777788888888888888888888888888888888888888888888888888888877665443

>KOG0976|consensus

Probab=95.18  E-value=5.2  Score=42.38  Aligned_cols=52  Identities=19%  Similarity=0.239  Sum_probs=29.5

Q ss_pred             chhHHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601          60 KKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIEL  111 (270)
Q Consensus        60 ~~~E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~El  111 (270)
                      -+.+.+|..=++.=-+...+|.+++..+-....|+..+-++++++..++.++
T Consensus       151 h~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k  202 (1265)
T KOG0976|consen  151 HKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEK  202 (1265)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444443434444455555555556667777777777777666665544

>KOG4673|consensus

Probab=95.16  E-value=4.8  Score=41.88  Aligned_cols=100  Identities=19%  Similarity=0.246  Sum_probs=48.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccch-hHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601          82 ESTANVEEWKKQLQAYKEENQKLKTKYIELEA--TKGVS-EAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA  158 (270)
Q Consensus        82 Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~--~~~~~-~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~  158 (270)
                      +....|...++.+.++-.+..-|+..+.-+..  +..-+ ..+.+-.+-+..|.++=+.|-.++-....=|..||+++.+
T Consensus       406 e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke  485 (961)
T KOG4673|consen  406 EYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKE  485 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh
Confidence            34444555555555555555555555442211  00000 1233333444555556666666666667777778777754


Q ss_pred             hh---hh-hhhhHHHHHHHHHHHHhhH
Q psy5601         159 VE---DK-CKAAVELRKELTSVRSKNE  181 (270)
Q Consensus       159 LE---~~-~~eipel~~e~~~L~~~l~  181 (270)
                      -+   .+ +..|..|.++...|+.-++
T Consensus       486 ~etl~~K~ge~i~~L~sE~~~lk~il~  512 (961)
T KOG4673|consen  486 AETLEEKKGELITKLQSEENKLKSILR  512 (961)
T ss_pred             hhHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence            33   22 3344444444444444333

>KOG0018|consensus

Probab=95.14  E-value=4.8  Score=43.66  Aligned_cols=61  Identities=13%  Similarity=0.238  Sum_probs=33.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601         204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI  264 (270)
Q Consensus       204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l  264 (270)
                      +...++....++..+...|.++...+++.....+.+........+.-....++|..++..|
T Consensus       414 l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql  474 (1141)
T KOG0018|consen  414 LKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQL  474 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            3444444555555555556666666666655555555555555555555555555554444

>KOG0994|consensus

Probab=95.12  E-value=5.3  Score=43.84  Aligned_cols=40  Identities=3%  Similarity=0.025  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5601         219 QAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELA  258 (270)
Q Consensus       219 E~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~  258 (270)
                      -.++.+|+......+.++.....+|..|...+...+..|+
T Consensus      1709 l~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1709 LDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            3344555555555555555555555555555554444443

>KOG0946|consensus

Probab=95.05  E-value=4  Score=43.09  Aligned_cols=100  Identities=13%  Similarity=0.174  Sum_probs=52.9

Q ss_pred             HhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhh--hHHHHHHHHHHHHhhHHHHHHhh
Q psy5601         112 EATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-CKA--AVELRKELTSVRSKNETLDSELK  188 (270)
Q Consensus       112 e~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~e--ipel~~e~~~L~~~l~~lE~~l~  188 (270)
                      ++.+..+..+..++.+...+...-.-+.+++..+..-++..++....=+.. ++.  .-...+++-++..++.+...++.
T Consensus       730 e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~  809 (970)
T KOG0946|consen  730 EASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQ  809 (970)
T ss_pred             HhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHH
Confidence            333334445555555555555555556666655555565555544322211 222  22344555566556666666667


Q ss_pred             hhHHHHHHHHHhhHHHHHHHHHH
Q psy5601         189 CRDEEVKKLTNAKHAVEDKCKLL  211 (270)
Q Consensus       189 ~~d~el~~L~~e~e~l~~~~e~~  211 (270)
                      +...+++.++.++..+..++...
T Consensus       810 ~~q~e~~~~keq~~t~~~~tsa~  832 (970)
T KOG0946|consen  810 ELQSELTQLKEQIQTLLERTSAA  832 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            77767666666655544444333

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=95.03  E-value=2.4  Score=38.61  Aligned_cols=85  Identities=18%  Similarity=0.227  Sum_probs=36.7

Q ss_pred             HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601         173 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAG  252 (270)
Q Consensus       173 ~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~  252 (270)
                      ...+...-..|+.........+..|.............+..++.+++..|..|.............++.++......+..
T Consensus        42 ~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~  121 (246)
T PF00769_consen   42 LKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE  121 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444555555555544444444444555555555555555555555555555555555555544444


Q ss_pred             HHHHH
Q psy5601         253 RVAEL  257 (270)
Q Consensus       253 ki~eL  257 (270)
                      ....|
T Consensus       122 ak~~L  126 (246)
T PF00769_consen  122 AKEEL  126 (246)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.02  E-value=0.38  Score=42.84  Aligned_cols=81  Identities=16%  Similarity=0.163  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         167 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTL  246 (270)
Q Consensus       167 pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l  246 (270)
                      |....++..++.++..+..++.+.+...+.   ...++.+++......+.+++.++..|..+|..++...+.++.++..+
T Consensus        89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~  165 (206)
T PRK10884         89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQ---RTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK  165 (206)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444433332   23334444444555555566666666666666666666555555555


Q ss_pred             HHHH
Q psy5601         247 NHQL  250 (270)
Q Consensus       247 ~e~l  250 (270)
                      ....
T Consensus       166 ~~~~  169 (206)
T PRK10884        166 QRTI  169 (206)
T ss_pred             HHHH
Confidence            5443

>KOG2991|consensus

Probab=94.93  E-value=3.1  Score=38.46  Aligned_cols=94  Identities=17%  Similarity=0.248  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhhhh--hhh--------hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh-----hH
Q psy5601         138 LDSELKCRDEEVKKLTNAKHAVEDK--CKA--------AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA-----KH  202 (270)
Q Consensus       138 le~eL~~~e~Eie~L~~qi~~LE~~--~~e--------ipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e-----~e  202 (270)
                      +-.++..++.|+..+..+|..|..+  .+-        -|.+...-..|+..++...+.|.....+|..-+.-     -.
T Consensus       134 lv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK  213 (330)
T KOG2991|consen  134 LVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGK  213 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchH
Confidence            3445555666666667777666665  111        25666666666666666666666665555443332     33


Q ss_pred             HHHHHHHHHhHHHHH-----HHHHHHHHHHHHHH
Q psy5601         203 AVEDKCKLLSQENAE-----LQAAISLVQAQLDT  231 (270)
Q Consensus       203 ~l~~~~e~~~~r~~~-----lE~~i~~LE~~Lee  231 (270)
                      .|..+|-.+..+|.+     .+.+|..|+.+|.=
T Consensus       214 ~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAm  247 (330)
T KOG2991|consen  214 MLMAKCRTLQQENEELGHQASEGRIAELEIELAM  247 (330)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHH
Confidence            477788888888877     56777777777653

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.91  E-value=6.1  Score=41.79  Aligned_cols=97  Identities=11%  Similarity=0.179  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         168 ELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLN  247 (270)
Q Consensus       168 el~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~  247 (270)
                      ....++..+...|.++|..|..+..+|..++.-..-+..++......+..++.+...++.++..+......++.+|..-+
T Consensus       614 ~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er  693 (769)
T PF05911_consen  614 SCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKER  693 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555554433333344444445444555555555555555555555555555554444


Q ss_pred             HHHhHHHHHHHHHHHHH
Q psy5601         248 HQLAGRVAELATIHREI  264 (270)
Q Consensus       248 e~ld~ki~eL~el~~~l  264 (270)
                      .--+.......++...|
T Consensus       694 ~~~~e~~~kc~~Le~el  710 (769)
T PF05911_consen  694 ALSEELEAKCRELEEEL  710 (769)
T ss_pred             hcchhhhhHHHHHHHHH
Confidence            44444444444444444

The function of this family is unknown.

>KOG1029|consensus

Probab=94.91  E-value=6.1  Score=41.74  Aligned_cols=33  Identities=30%  Similarity=0.353  Sum_probs=15.8

Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601         200 AKHAVEDKCKLLSQENAELQAAISLVQAQLDTL  232 (270)
Q Consensus       200 e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~  232 (270)
                      +++.+...|+..-+.+..+..+|++++..|..+
T Consensus       473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l  505 (1118)
T KOG1029|consen  473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKL  505 (1118)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344444444444444444555555544444433

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=94.89  E-value=2.5  Score=37.25  Aligned_cols=32  Identities=22%  Similarity=0.248  Sum_probs=18.3

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601         201 KHAVEDKCKLLSQENAELQAAISLVQAQLDTL  232 (270)
Q Consensus       201 ~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~  232 (270)
                      ++.+..++..+..+..+.+.+|..|+..++-.
T Consensus       120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~  151 (194)
T PF15619_consen  120 REELQRKLSQLEQKLQEKEKKIQELEKQLELE  151 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455566666666666666666666555433

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=94.82  E-value=0.6  Score=48.64  Aligned_cols=36  Identities=11%  Similarity=0.159  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5601         226 QAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIH  261 (270)
Q Consensus       226 E~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~  261 (270)
                      ..++..++..+.........|++....++.+..++.
T Consensus       605 ~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av  640 (722)
T PF05557_consen  605 EKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAV  640 (722)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677778888888888888888888877766554

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0979|consensus

Probab=94.79  E-value=7.3  Score=42.08  Aligned_cols=19  Identities=21%  Similarity=0.183  Sum_probs=13.2

Q ss_pred             CcccccccccccchhhhhHHHHH
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSL   23 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~   23 (270)
                      |||+.|+-.||.    +-|.+-|
T Consensus        31 ~Ty~~~e~~pgp----sLNmIiG   49 (1072)
T KOG0979|consen   31 LTYDHTEFLPGP----SLNMIIG   49 (1072)
T ss_pred             eeeeeeeecCCC----ceeeEEC
Confidence            688888888886    4454443

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.71  E-value=6.4  Score=41.08  Aligned_cols=46  Identities=11%  Similarity=0.170  Sum_probs=27.5

Q ss_pred             hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHH
Q psy5601         165 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKL  210 (270)
Q Consensus       165 eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~  210 (270)
                      .+..|..+...+..++..+-.++...-..+..++.+++++...+..
T Consensus       289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~  334 (754)
T TIGR01005       289 LIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRS  334 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666666666666665555666666666665555443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=94.70  E-value=4.1  Score=38.73  Aligned_cols=47  Identities=17%  Similarity=0.300  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         203 AVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQ  249 (270)
Q Consensus       203 ~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~  249 (270)
                      .+-.+++.+..++..++..+..+-.+.+++..+.+.++....+|..+
T Consensus       130 ~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~E  176 (319)
T PF09789_consen  130 DLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHE  176 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555554444444444

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=94.51  E-value=8.1  Score=41.39  Aligned_cols=13  Identities=31%  Similarity=0.544  Sum_probs=4.8

Q ss_pred             HHHhhHHHHHHhh
Q psy5601         176 VRSKNETLDSELK  188 (270)
Q Consensus       176 L~~~l~~lE~~l~  188 (270)
                      +...++.++..+.
T Consensus       366 l~~~~~~l~~~~~  378 (908)
T COG0419         366 LEERLEELEKELE  378 (908)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>KOG4360|consensus

Probab=94.51  E-value=4.1  Score=40.92  Aligned_cols=111  Identities=14%  Similarity=0.193  Sum_probs=72.5

Q ss_pred             chHHHHHHHH-HHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHh
Q psy5601         134 KNETLDSELK-CRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLS  212 (270)
Q Consensus       134 ~~eele~eL~-~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~  212 (270)
                      -+++|+.++- .+..++..++.++..+-.   .+...+.++...-+++..|.+.|.+++..+..+..+++++-.-+....
T Consensus       191 ~~~~keq~~y~~~~KelrdtN~q~~s~~e---el~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~  267 (596)
T KOG4360|consen  191 TYEEKEQQLYGDCVKELRDTNTQARSGQE---ELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK  267 (596)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777 677777777777744432   455666777777777778888888888888777777766666565555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         213 QENAELQAAISLVQAQLDTLLASQDAQRRIIDTLN  247 (270)
Q Consensus       213 ~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~  247 (270)
                      .....+....++++.+-.+.-....+.+.||+.|+
T Consensus       268 da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr  302 (596)
T KOG4360|consen  268 DAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR  302 (596)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            55555555555555555555555555555555543

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=94.49  E-value=0.78  Score=46.76  Aligned_cols=37  Identities=11%  Similarity=0.083  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601         215 NAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA  251 (270)
Q Consensus       215 ~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld  251 (270)
                      ...++.+|..|+..|.+.....+.++..|..+...+.
T Consensus       476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~  512 (652)
T COG2433         476 IRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK  512 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3346777888888888888888888877777765444

>KOG0976|consensus

Probab=94.49  E-value=7.8  Score=41.11  Aligned_cols=27  Identities=19%  Similarity=0.393  Sum_probs=15.6

Q ss_pred             HHHhhhhhchHHHHHHHHHHHHHHHHH
Q psy5601         126 KELTSVRSKNETLDSELKCRDEEVKKL  152 (270)
Q Consensus       126 ~e~~~l~~~~eele~eL~~~e~Eie~L  152 (270)
                      .+.+.+++++..++.+|.++-.+|-+.
T Consensus       141 telE~~~srlh~le~eLsAk~~eIf~~  167 (1265)
T KOG0976|consen  141 IEIENLNSRLHKLEDELSAKAHDIFMI  167 (1265)
T ss_pred             HHHHhhHHHHHHHHHHHhhhhHHHHHH
Confidence            445555566666666666655555543

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.48  E-value=5.5  Score=39.30  Aligned_cols=15  Identities=13%  Similarity=0.233  Sum_probs=6.8

Q ss_pred             HHHHHHHhhHHhhhh
Q psy5601         148 EVKKLTNAKHAVEDK  162 (270)
Q Consensus       148 Eie~L~~qi~~LE~~  162 (270)
                      .+..++.++..+...
T Consensus       255 ~l~~l~~~l~~l~~~  269 (498)
T TIGR03007       255 RIEALEKQLDALRLR  269 (498)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444444444

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0243|consensus

Probab=94.46  E-value=4.6  Score=43.75  Aligned_cols=43  Identities=28%  Similarity=0.373  Sum_probs=24.0

Q ss_pred             chhHHHHhhhhh------------cchhhh-h-hhHHhhHHHHHHHHHHHHHHHHHH
Q psy5601          60 KKWEIELANLKS------------NNLRLT-S-ALQESTANVEEWKKQLQAYKEENQ  102 (270)
Q Consensus        60 ~~~E~el~~Lk~------------~n~rl~-~-al~Es~a~v~~wk~qL~~l~een~  102 (270)
                      +..|..|.||-+            -|-+|. . -+-+....+++++.+|.+.++.|-
T Consensus       372 ~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnG  428 (1041)
T KOG0243|consen  372 HNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNG  428 (1041)
T ss_pred             ccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCc
Confidence            457777888765            232222 2 225566666666666666555543

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=94.40  E-value=6.1  Score=39.48  Aligned_cols=85  Identities=24%  Similarity=0.344  Sum_probs=46.8

Q ss_pred             hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy5601          68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDE  147 (270)
Q Consensus        68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~  147 (270)
                      .||..|.+|-...+++.    +.-.-+..+.+.--.|+.-.--.++      ....|.....+...-|..|..+|..+++
T Consensus       275 ~lk~~n~~l~e~i~ea~----k~s~~i~~l~ek~r~l~~D~nk~~~------~~~~mk~K~~~~~g~l~kl~~eie~kEe  344 (622)
T COG5185         275 NLKTQNDNLYEKIQEAM----KISQKIKTLREKWRALKSDSNKYEN------YVNAMKQKSQEWPGKLEKLKSEIELKEE  344 (622)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHHHH------HHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            57888877776665532    2222333333333333333322222      3444445556666666667777777777


Q ss_pred             HHHHHHHhhHHhhhh
Q psy5601         148 EVKKLTNAKHAVEDK  162 (270)
Q Consensus       148 Eie~L~~qi~~LE~~  162 (270)
                      ||+-|+.++.+|..+
T Consensus       345 ei~~L~~~~d~L~~q  359 (622)
T COG5185         345 EIKALQSNIDELHKQ  359 (622)
T ss_pred             HHHHHHhhHHHHHHH
Confidence            777777766666655

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=94.40  E-value=0.58  Score=47.63  Aligned_cols=28  Identities=18%  Similarity=0.227  Sum_probs=13.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy5601         206 DKCKLLSQENAELQAAISLVQAQLDTLL  233 (270)
Q Consensus       206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~  233 (270)
                      .++..+..++.+-..+++.|+.+|..++
T Consensus       481 ~~I~~L~~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         481 RRIERLEKELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444555555555544

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=94.20  E-value=5  Score=37.71  Aligned_cols=45  Identities=24%  Similarity=0.418  Sum_probs=30.9

Q ss_pred             HHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601          65 ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELE  112 (270)
Q Consensus        65 el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele  112 (270)
                      .|-.|+.+|++|.+-|..-.-+-.+++.+++.|+..   |.++|.+.+
T Consensus        64 QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsR---LaaAi~d~d  108 (305)
T PF14915_consen   64 QLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSR---LAAAIQDHD  108 (305)
T ss_pred             hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHH---HHHHHhhHH
Confidence            466788888888888866666777777777777653   445555443

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.16  E-value=6.3  Score=38.72  Aligned_cols=28  Identities=18%  Similarity=0.217  Sum_probs=15.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601          83 STANVEEWKKQLQAYKEENQKLKTKYIE  110 (270)
Q Consensus        83 s~a~v~~wk~qL~~l~een~rL~~~i~E  110 (270)
                      ..+.+...+.++..++...++|...+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~rL~a~~~~  122 (457)
T TIGR01000        95 EENQKQLLEQQLDNLKDQKKSLDTLKQS  122 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555666666666666555443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG0018|consensus

Probab=94.16  E-value=10  Score=41.21  Aligned_cols=42  Identities=21%  Similarity=0.257  Sum_probs=20.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         205 EDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTL  246 (270)
Q Consensus       205 ~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l  246 (270)
                      .+.+..+.+++.+++.++..+...++.+..++..+..-+..+
T Consensus       394 ~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~  435 (1141)
T KOG0018|consen  394 QDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSL  435 (1141)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555555555555444444333333333

>KOG0980|consensus

Probab=94.13  E-value=9.5  Score=40.70  Aligned_cols=10  Identities=10%  Similarity=0.441  Sum_probs=3.9

Q ss_pred             HHHHHHHHHH
Q psy5601         102 QKLKTKYIEL  111 (270)
Q Consensus       102 ~rL~~~i~El  111 (270)
                      .+++.++..+
T Consensus       361 ~q~~~ql~~l  370 (980)
T KOG0980|consen  361 EQYENQLLAL  370 (980)
T ss_pred             HHHHHHHHHH
Confidence            3334444333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.13  E-value=1.5  Score=41.39  Aligned_cols=32  Identities=0%  Similarity=-0.015  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601         234 ASQDAQRRIIDTLNHQLAGRVAELATIHREIN  265 (270)
Q Consensus       234 ~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~  265 (270)
                      .....+..++..+.+.++.....+.-....|.
T Consensus        99 ~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~  130 (314)
T PF04111_consen   99 REYNELQLELIEFQEERDSLKNQYEYASNQLD  130 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=94.12  E-value=1.1  Score=33.92  Aligned_cols=72  Identities=17%  Similarity=0.179  Sum_probs=53.6

Q ss_pred             hHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601         180 NETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA  251 (270)
Q Consensus       180 l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld  251 (270)
                      ++.||.++...-..|.=|+.+++++.++-..+...+..+...-..|+.+-..++..+......|..|.+.++
T Consensus         6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~   77 (79)
T PRK15422          6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME   77 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            456666777666777778888888888777777777776666677777778888877777777777766554

>PF13166 AAA_13: AAA domain

Probab=94.10  E-value=6.5  Score=40.48  Aligned_cols=45  Identities=20%  Similarity=0.241  Sum_probs=20.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         206 DKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL  250 (270)
Q Consensus       206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l  250 (270)
                      ..+.....+...++..+..++..+..+......+..++..+...+
T Consensus       410 ~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~  454 (712)
T PF13166_consen  410 EDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQL  454 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444444444444444433

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.06  E-value=3  Score=37.75  Aligned_cols=22  Identities=9%  Similarity=0.175  Sum_probs=7.9

Q ss_pred             HHHHHhhHHHHHHhhhhHHHHH
Q psy5601         174 TSVRSKNETLDSELKCRDEEVK  195 (270)
Q Consensus       174 ~~L~~~l~~lE~~l~~~d~el~  195 (270)
                      +.|..+-......|+.+..+|+
T Consensus        42 ~~L~~Er~~h~eeLrqI~~DIn   63 (230)
T PF10146_consen   42 EELLQERMAHVEELRQINQDIN   63 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=94.03  E-value=1.8  Score=41.77  Aligned_cols=133  Identities=17%  Similarity=0.190  Sum_probs=62.1

Q ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601          80 LQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAV  159 (270)
Q Consensus        80 l~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~L  159 (270)
                      ..++..+...|+.++++.--..   +-.+.  ...+.=-..++.|..-...+...+...+..|..+..++..--.+|..-
T Consensus       186 i~es~vd~~eWklEvERV~PqL---Kv~~~--~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sR  260 (359)
T PF10498_consen  186 IIESKVDPAEWKLEVERVLPQL---KVTIR--ADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESR  260 (359)
T ss_pred             cccccCCHHHHHHHHHHHhhhh---eeecc--CCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666777777766653332   11110  000000012333333444444444555555555555555444444433


Q ss_pred             hhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q psy5601         160 EDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE  217 (270)
Q Consensus       160 E~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~  217 (270)
                      |.- .+++..+..+.-.+..++..+..++....+.+..+..++..++++++.....+.+
T Consensus       261 Ek~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee  319 (359)
T PF10498_consen  261 EKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE  319 (359)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333 4444445555555555555555555555555555555555555544444444443

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=93.90  E-value=9.9  Score=40.07  Aligned_cols=89  Identities=12%  Similarity=0.158  Sum_probs=38.3

Q ss_pred             HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601         173 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAG  252 (270)
Q Consensus       173 ~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~  252 (270)
                      ++.++++-.++-..+.++|.++-.-+...+   -+...+.-+..++-..++.++..|+.++.+-.-+.-.|+    +||.
T Consensus       464 ~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d---~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlr----QrDa  536 (861)
T PF15254_consen  464 IENQKEENKRLRKMFQEKDQELLENKQQFD---IETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLR----QRDA  536 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHH----HHHH
Confidence            344444444444445555555444333321   122222333334444555555555555554443333333    3444


Q ss_pred             HHHHHHHH----HHHHHHhh
Q psy5601         253 RVAELATI----HREINTAL  268 (270)
Q Consensus       253 ki~eL~el----~~~l~~~~  268 (270)
                      -|.-|.+|    +..|+++|
T Consensus       537 Ei~RL~eLtR~LQ~Sma~lL  556 (861)
T PF15254_consen  537 EIERLRELTRTLQNSMAKLL  556 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            44444443    44445554

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.87  E-value=1.3  Score=32.84  Aligned_cols=71  Identities=17%  Similarity=0.187  Sum_probs=55.0

Q ss_pred             hHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         180 NETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL  250 (270)
Q Consensus       180 l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l  250 (270)
                      ++.||..+...-.-|.-|+.++++|.++-..+.+..+++....+.|+++-+.++..+..-...++.|....
T Consensus         6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm   76 (79)
T COG3074           6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM   76 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34555666666667777888899999888888888888888888888888888888877777777766544

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=93.81  E-value=7.1  Score=38.11  Aligned_cols=150  Identities=9%  Similarity=0.046  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHH
Q psy5601          93 QLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKE  172 (270)
Q Consensus        93 qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e  172 (270)
                      |-..++.+...|......+++      ....+.-...+|-..+.+|+.+..++..+-..+..+-.+|-.       =...
T Consensus       145 Q~q~lqtrl~~l~~qr~ql~a------q~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~-------r~~a  211 (499)
T COG4372         145 QAQDLQTRLKTLAEQRRQLEA------QAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLAT-------RANA  211 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence            333444444444444444443      222233333444444455554444443333333332222222       2234


Q ss_pred             HHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601         173 LTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAG  252 (270)
Q Consensus       173 ~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~  252 (270)
                      +.+..+++.+.+..+...+..|+.+-..+......+-.-.+.+.+-+.++..||....-++..+..++.=-....+.+..
T Consensus       212 ~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q  291 (499)
T COG4372         212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQ  291 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55666777777777777777777766666555555555555555555566666666555555555555444444444444


Q ss_pred             HHH
Q psy5601         253 RVA  255 (270)
Q Consensus       253 ki~  255 (270)
                      ++.
T Consensus       292 ~~a  294 (499)
T COG4372         292 AAA  294 (499)
T ss_pred             HHH
Confidence            443

>KOG1937|consensus

Probab=93.69  E-value=8.1  Score=38.34  Aligned_cols=139  Identities=18%  Similarity=0.264  Sum_probs=80.2

Q ss_pred             HHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH-----hhh-hhchHH
Q psy5601          64 IELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKEL-----TSV-RSKNET  137 (270)
Q Consensus        64 ~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~-----~~l-~~~~ee  137 (270)
                      .++..|---..|+..+|-++.+++.++...|....-....|......-.- ... .....|.+..     .+- -.+|++
T Consensus       272 selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~-pll-~kkl~Lr~~l~~~e~e~~e~~~Iqe  349 (521)
T KOG1937|consen  272 SELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQ-PLL-QKKLQLREELKNLETEDEEIRRIQE  349 (521)
T ss_pred             HHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHH-HHHHHHHHHHhcccchHHHHHHHHH
Confidence            34554444556788888889999999888888888877777776643110 000 0000000000     000 246777


Q ss_pred             HHHHHHHHHHHHH-------HHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601         138 LDSELKCRDEEVK-------KLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE  205 (270)
Q Consensus       138 le~eL~~~e~Eie-------~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~  205 (270)
                      ++.+|.+..++|.       +|++.++.+-. +-.--..+.++-++-..|+..+..|-..-++-.+|+++.+.++
T Consensus       350 leqdL~a~~eei~~~eel~~~Lrsele~lp~-dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s  423 (521)
T KOG1937|consen  350 LEQDLEAVDEEIESNEELAEKLRSELEKLPD-DVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSES  423 (521)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777776       33333322211 1112346667777777777777777777777777777744433

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=93.64  E-value=3.2  Score=39.97  Aligned_cols=54  Identities=15%  Similarity=0.457  Sum_probs=29.2

Q ss_pred             ccccccccchhHHHHhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601          52 RVADSANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIEL  111 (270)
Q Consensus        52 ~~~ss~n~~~~E~el~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~El  111 (270)
                      ..+|.++...|..|+.-.-   ++|+-.   ..+..+.|..-|+..+.-...+...+.+.
T Consensus       186 i~es~vd~~eWklEvERV~---PqLKv~---~~~d~kDWR~hleqm~~~~~~I~~~~~~~  239 (359)
T PF10498_consen  186 IIESKVDPAEWKLEVERVL---PQLKVT---IRADAKDWRSHLEQMKQHKKSIESALPET  239 (359)
T ss_pred             cccccCCHHHHHHHHHHHh---hhheee---ccCCcchHHHHHHHHHHHHHHHHHhhhHH
Confidence            6678888899988866211   111111   11112677766666665555555544443

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=93.64  E-value=0.76  Score=33.23  Aligned_cols=51  Identities=25%  Similarity=0.444  Sum_probs=23.8

Q ss_pred             HHHHhhhhHH---HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy5601         183 LDSELKCRDE---EVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLL  233 (270)
Q Consensus       183 lE~~l~~~d~---el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~  233 (270)
                      |+++|+.++.   +|+..+...-.+..++++++.+|.+|...|..|+.++++++
T Consensus         6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r   59 (61)
T PF08826_consen    6 LEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4455554442   33333333333444555555555555555555555555443

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=93.62  E-value=4.8  Score=35.49  Aligned_cols=46  Identities=17%  Similarity=0.223  Sum_probs=27.6

Q ss_pred             HhhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601          66 LANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIEL  111 (270)
Q Consensus        66 l~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~El  111 (270)
                      +.++...-.++..++....++....+.++..+......+..+....
T Consensus        32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A   77 (221)
T PF04012_consen   32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA   77 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455556666666666666666666666666666665443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=93.44  E-value=0.078  Score=55.14  Aligned_cols=82  Identities=21%  Similarity=0.302  Sum_probs=0.0

Q ss_pred             hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q psy5601          68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDE  147 (270)
Q Consensus        68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~  147 (270)
                      .|+..+.-|+.-+....+.+...+..+..+..+...+...+..++.             ....+..-+..|+.++.=...
T Consensus       347 ~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~-------------~~~~~~~~~~RLerq~~L~~k  413 (722)
T PF05557_consen  347 QLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEA-------------SLEALKKLIRRLERQKALATK  413 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555555555555555555444443             112222233344444444555


Q ss_pred             HHHHHHHhhHHhhhh
Q psy5601         148 EVKKLTNAKHAVEDK  162 (270)
Q Consensus       148 Eie~L~~qi~~LE~~  162 (270)
                      |++-||+++......
T Consensus       414 E~d~LR~~L~syd~e  428 (722)
T PF05557_consen  414 ERDYLRAQLKSYDKE  428 (722)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHHHHhhhh
Confidence            666666666555443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=93.44  E-value=11  Score=39.20  Aligned_cols=160  Identities=18%  Similarity=0.258  Sum_probs=73.7

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601          82 ESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED  161 (270)
Q Consensus        82 Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~  161 (270)
                      ..+.+|...+.+|..-+-.|..|......+.-      .-..|-.+...+..++..+..++.....--.++-++|+.|+.
T Consensus       468 ~yskQVeeLKtELE~EkLKN~ELt~~~nkLsl------Ekk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee  541 (786)
T PF05483_consen  468 HYSKQVEELKTELEQEKLKNTELTVNCNKLSL------EKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEE  541 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555554444432      233333444455555555555555544445555556666654


Q ss_pred             hhhhhHHHHHHHHHHHHhhH----HHHH---------------------HhhhhHHHHHHHHHhhHHHHHHHHHHhHHHH
Q psy5601         162 KCKAAVELRKELTSVRSKNE----TLDS---------------------ELKCRDEEVKKLTNAKHAVEDKCKLLSQENA  216 (270)
Q Consensus       162 ~~~eipel~~e~~~L~~~l~----~lE~---------------------~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~  216 (270)
                      ..   ..|+.++.+++.++.    +++.                     .+.-.+..++.|+.+++.-...++.+...|.
T Consensus       542 ~~---~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk  618 (786)
T PF05483_consen  542 TN---TQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENK  618 (786)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            31   112233333332222    2222                     2222233344445545544455555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         217 ELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL  250 (270)
Q Consensus       217 ~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l  250 (270)
                      .|..++..--.++....-.+..++.|+..+....
T Consensus       619 ~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~  652 (786)
T PF05483_consen  619 ALKKKITAESKQSNVYEIKVNKLQEELENLKKKH  652 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            5555544444444444444444444544444433

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG1853|consensus

Probab=93.41  E-value=6.4  Score=36.35  Aligned_cols=29  Identities=14%  Similarity=0.247  Sum_probs=16.9

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601         133 SKNETLDSELKCRDEEVKKLTNAKHAVED  161 (270)
Q Consensus       133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~  161 (270)
                      +.+.+++.+...++.+..+|+-.++.+..
T Consensus        52 sqL~q~etrnrdl~t~nqrl~~E~e~~Ke   80 (333)
T KOG1853|consen   52 SQLDQLETRNRDLETRNQRLTTEQERNKE   80 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666666666555544443

>KOG4673|consensus

Probab=93.28  E-value=12  Score=39.10  Aligned_cols=112  Identities=15%  Similarity=0.136  Sum_probs=65.5

Q ss_pred             HHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601         127 ELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE  205 (270)
Q Consensus       127 e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~  205 (270)
                      -+.+..++|..++..+++.-.|-+.|+.++..|... -..+|.                +.|..+|+-|+.|+.+.+.|+
T Consensus       403 l~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~----------------DeLaEkdE~I~~lm~EGEkLS  466 (961)
T KOG4673|consen  403 LREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK----------------DELAEKDEIINQLMAEGEKLS  466 (961)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh----------------HHHHHHHHHHHHHHHHHHHhH
Confidence            344555677777777777767777777766544432 111111                355667777788877777666


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5601         206 DKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRV  254 (270)
Q Consensus       206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki  254 (270)
                      .+.=.-..-+..|.+++++-+.-++.+-.....+..|...|+..+++|-
T Consensus       467 K~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Ke  515 (961)
T KOG4673|consen  467 KKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKE  515 (961)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHH
Confidence            6555444555555555555555555555555555555555555555553

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=93.26  E-value=1.4  Score=32.46  Aligned_cols=64  Identities=20%  Similarity=0.336  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601         169 LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL  232 (270)
Q Consensus       169 l~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~  232 (270)
                      |...+..|+..++.+...+..-+.++..|..+.+.....+..+-..+..|...+..|..+|++.
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445566666667777777777777777777766666666666666666666666665555443

>PRK10869 recombination and repair protein; Provisional

Probab=93.25  E-value=11  Score=38.39  Aligned_cols=50  Identities=16%  Similarity=0.157  Sum_probs=32.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhh
Q psy5601          83 STANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVR  132 (270)
Q Consensus        83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~  132 (270)
                      .......|...-.....+.+-|+-++.|++...-.|.+.++|+.+...|.
T Consensus       169 ~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~  218 (553)
T PRK10869        169 SCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLA  218 (553)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            33444444444455555667788888888887777777777777766554

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.18  E-value=5.8  Score=35.94  Aligned_cols=71  Identities=13%  Similarity=0.128  Sum_probs=34.0

Q ss_pred             HhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy5601         186 ELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAE  256 (270)
Q Consensus       186 ~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~e  256 (270)
                      -|.+...+++.|..+.....+.+..+...+..+|.-|..++.+....+.....+..++..|++..|....+
T Consensus        33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444555555555555555555555544444444444444444444433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=93.18  E-value=2.4  Score=37.68  Aligned_cols=75  Identities=16%  Similarity=0.214  Sum_probs=37.5

Q ss_pred             hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         163 CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQD  237 (270)
Q Consensus       163 ~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~  237 (270)
                      +++|-.|+.++-.++..+...+..+..+..-+..-..+++....++....+...-+..++..++.++..++....
T Consensus        30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~  104 (202)
T PF06818_consen   30 DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELA  104 (202)
T ss_pred             HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHH
Confidence            556666666666666666555555555544444333334444444444444443344455555555554444444

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=93.17  E-value=10  Score=38.03  Aligned_cols=176  Identities=14%  Similarity=0.213  Sum_probs=90.5

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH----HHHHhh
Q psy5601          81 QESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVK----KLTNAK  156 (270)
Q Consensus        81 ~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie----~L~~qi  156 (270)
                      ...-...-+++..+..+.....-+...+..+.       ...++.....-+.......++++..|..-..    .-.+.|
T Consensus       183 ~~fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~-------~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI  255 (511)
T PF09787_consen  183 VEFLKRTLKKEIERQELEERPKALRHYIEYLR-------ESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLI  255 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            33333344444444444444443333333333       2333334444455555555555555552211    123445


Q ss_pred             HHhhhhhhh-----------hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601         157 HAVEDKCKA-----------AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLV  225 (270)
Q Consensus       157 ~~LE~~~~e-----------ipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~L  225 (270)
                      ..|...|..           .|.++.+.+.+++.+..++..|.....++.++..+...   +.+........+...+...
T Consensus       256 ~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~---~~~~~~~~~~~~~~~~~~~  332 (511)
T PF09787_consen  256 ESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG---EQESFREQPQELSQQLEPE  332 (511)
T ss_pred             HHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHH
Confidence            555553222           79999999999999999999998888888877665222   2222222222222222222


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHH
Q psy5601         226 ---QAQLDTLLASQDAQRRIIDTLN----HQLAGRVAELATIHREINT  266 (270)
Q Consensus       226 ---E~~Lee~~~~~~~~~~El~~l~----e~ld~ki~eL~el~~~l~~  266 (270)
                         +.++.-......++..++....    -.+..++.++.-++..|+.
T Consensus       333 ~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~  380 (511)
T PF09787_consen  333 LTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSA  380 (511)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence               4444444444444444443333    3344456666666666654

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG0963|consensus

Probab=93.17  E-value=12  Score=38.57  Aligned_cols=26  Identities=35%  Similarity=0.618  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601          88 EEWKKQLQAYKEENQKLKTKYIELEA  113 (270)
Q Consensus        88 ~~wk~qL~~l~een~rL~~~i~Ele~  113 (270)
                      ..|.....-|++.+..+..++..++.
T Consensus       178 q~~~e~e~~L~~~~~~~~~q~~~le~  203 (629)
T KOG0963|consen  178 QEWAEREAGLKDEEQNLQEQLEELEK  203 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555554

>KOG4360|consensus

Probab=93.15  E-value=9.9  Score=38.30  Aligned_cols=132  Identities=17%  Similarity=0.202  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHH---------HHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601         135 NETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELR---------KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE  205 (270)
Q Consensus       135 ~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~---------~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~  205 (270)
                      .+.|...|...++|+..|+.++--|..+ +-++...         .+....+..+..+-..|..+-.+++.++.++-.|.
T Consensus       161 ~EaL~ekLk~~~een~~lr~k~~llk~E-t~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLl  239 (596)
T KOG4360|consen  161 LEALQEKLKPLEEENTQLRSKAMLLKTE-TLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLL  239 (596)
T ss_pred             HHHHHhhcCChHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666777777777766544332 1222222         22233333344444444445555555555555566


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601         206 DKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA  267 (270)
Q Consensus       206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~  267 (270)
                      ..+.++..+...+-..++.+-.-|.....+++.+..|++.+.++-..-...+++...+|..|
T Consensus       240 sql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l  301 (596)
T KOG4360|consen  240 SQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL  301 (596)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77777777777788888888888999999999999999999999999999999988888665

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=93.13  E-value=5  Score=34.31  Aligned_cols=126  Identities=19%  Similarity=0.255  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhh
Q psy5601          84 TANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKC  163 (270)
Q Consensus        84 ~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~  163 (270)
                      .+.++...-.+-.++....++..++...+.-|.....     ....++.-....+...|.+...|+.+|+..+..-=   
T Consensus         5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~-----iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v---   76 (177)
T PF13870_consen    5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHL-----IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTV---   76 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            3456777777778888888888888877765443322     23566666777777777778888888777662111   


Q ss_pred             hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q psy5601         164 KAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE  217 (270)
Q Consensus       164 ~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~  217 (270)
                      -...-.++....+..++..+...|.+.+..+..++.++..+...+..+...+..
T Consensus        77 ~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~  130 (177)
T PF13870_consen   77 QILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKK  130 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112223344444444444444444444444444444443333333333333333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.91  E-value=3.4  Score=39.02  Aligned_cols=22  Identities=27%  Similarity=0.241  Sum_probs=0.0

Q ss_pred             hhchHHHHHHHHHHHHHHHHHH
Q psy5601         132 RSKNETLDSELKCRDEEVKKLT  153 (270)
Q Consensus       132 ~~~~eele~eL~~~e~Eie~L~  153 (270)
                      ...++....+.+.|..=+..|+
T Consensus        15 ~~~~~~~~~E~~~Y~~fL~~l~   36 (314)
T PF04111_consen   15 DKQLEQAEKERDTYQEFLKKLE   36 (314)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444443333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG4302|consensus

Probab=92.89  E-value=5  Score=41.61  Aligned_cols=141  Identities=16%  Similarity=0.133  Sum_probs=98.9

Q ss_pred             HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhh----hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhh
Q psy5601         126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCK----AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK  201 (270)
Q Consensus       126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~----eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~  201 (270)
                      ......+.....|...|..++.|+..|-..+.+.-..+.    ...-|..++..|.--++.+-.+....-.++.++..++
T Consensus        54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qi  133 (660)
T KOG4302|consen   54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQI  133 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566677777777777777777777755444322    2235888999999999999888888888888888887


Q ss_pred             HHHHHHHHHH--------------h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHH
Q psy5601         202 HAVEDKCKLL--------------S-QENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAEL-ATIHREIN  265 (270)
Q Consensus       202 e~l~~~~e~~--------------~-~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL-~el~~~l~  265 (270)
                      +.+...+-.-              . .+..++..++..|+.+-..-.+.+..+..++..+.+.|+-..... +++|+.|.
T Consensus       134 e~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~  213 (660)
T KOG4302|consen  134 EKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLV  213 (660)
T ss_pred             HHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhh
Confidence            7766655433              1 344447777777777777777777778888888888887766644 37777765


Q ss_pred             H
Q psy5601         266 T  266 (270)
Q Consensus       266 ~  266 (270)
                      .
T Consensus       214 ~  214 (660)
T KOG4302|consen  214 D  214 (660)
T ss_pred             h
Confidence            4

>PRK10698 phage shock protein PspA; Provisional

Probab=92.88  E-value=6.8  Score=35.14  Aligned_cols=93  Identities=12%  Similarity=0.127  Sum_probs=50.7

Q ss_pred             hhhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHH
Q psy5601          67 ANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRD  146 (270)
Q Consensus        67 ~~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e  146 (270)
                      +.+++.-..++.++...-+.-...+.++..+....+....+-.-.=..|.. .--.+--.++......+..++.++....
T Consensus        34 ~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~E-dLAr~AL~~K~~~~~~~~~l~~~~~~~~  112 (222)
T PRK10698         34 QEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKE-DLARAALIEKQKLTDLIATLEHEVTLVD  112 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555667777777777888888888888777776664433222222 1222222233334445555555555555


Q ss_pred             HHHHHHHHhhHHhh
Q psy5601         147 EEVKKLTNAKHAVE  160 (270)
Q Consensus       147 ~Eie~L~~qi~~LE  160 (270)
                      .-+..|+.++..|+
T Consensus       113 ~~~~~L~~~l~~L~  126 (222)
T PRK10698        113 ETLARMKKEIGELE  126 (222)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555554444

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=92.83  E-value=7.8  Score=35.75  Aligned_cols=142  Identities=15%  Similarity=0.156  Sum_probs=72.7

Q ss_pred             hhhhhcchhhhhhhHHhhHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHhhccchhHHHHHHHHHhhhhhchHHHHHH
Q psy5601          67 ANLKSNNLRLTSALQESTAN----VEEWKKQLQAYKEENQKLKTKYIE-LEATKGVSEAAVELRKELTSVRSKNETLDSE  141 (270)
Q Consensus        67 ~~Lk~~n~rl~~al~Es~a~----v~~wk~qL~~l~een~rL~~~i~E-le~~~~~~~~~~ele~e~~~l~~~~eele~e  141 (270)
                      ..|...|..|..+.++....    |...=.+-+.|..-..-|...-.. +..      ...+|.+-.+.....|..|+.+
T Consensus        16 ~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~------ak~eLqe~eek~e~~l~~Lq~q   89 (258)
T PF15397_consen   16 DFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQ------AKAELQEWEEKEESKLSKLQQQ   89 (258)
T ss_pred             HHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHH------HHHHHHHHHHHHHhHHHHHHHH
Confidence            36788888888888654443    444333333333333222211110 010      1222223333334556666666


Q ss_pred             HHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH-hhHHHHHHHHHHhHH
Q psy5601         142 LKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTN-AKHAVEDKCKLLSQE  214 (270)
Q Consensus       142 L~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~-e~e~l~~~~e~~~~r  214 (270)
                      +...+..|...+.++.-|-.= +.+.|.-.=+|..|...|+.+-..-.+--.+++.+.. ....++.+++....+
T Consensus        90 l~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~  164 (258)
T PF15397_consen   90 LEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEE  164 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666655 6677776667777777777665544444344444322 244444444443333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=92.74  E-value=2.3  Score=37.90  Aligned_cols=23  Identities=17%  Similarity=0.460  Sum_probs=11.9

Q ss_pred             hhchHHHHHHHHHHHHHHHHHHH
Q psy5601         132 RSKNETLDSELKCRDEEVKKLTN  154 (270)
Q Consensus       132 ~~~~eele~eL~~~e~Eie~L~~  154 (270)
                      ...+..++.++...+.++..++.
T Consensus        92 ~~rlp~le~el~~l~~~l~~~~~  114 (206)
T PRK10884         92 RTRVPDLENQVKTLTDKLNNIDN  114 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555555555555555544443

>TIGR02977 phageshock_pspA phage shock protein A

Probab=92.70  E-value=6.9  Score=34.79  Aligned_cols=43  Identities=7%  Similarity=0.148  Sum_probs=26.1

Q ss_pred             hhhhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601          68 NLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIE  110 (270)
Q Consensus        68 ~Lk~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~E  110 (270)
                      ++++.=...+.+|...-+.-...+.++..+......+..+..-
T Consensus        35 em~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~   77 (219)
T TIGR02977        35 EMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAEL   77 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455666666666667777777777776666665543

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=92.67  E-value=7.1  Score=34.85  Aligned_cols=29  Identities=28%  Similarity=0.389  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601          85 ANVEEWKKQLQAYKEENQKLKTKYIELEA  113 (270)
Q Consensus        85 a~v~~wk~qL~~l~een~rL~~~i~Ele~  113 (270)
                      ..+..|...++.+...|..+..-|.+.+.
T Consensus        23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek   51 (207)
T PF05010_consen   23 EEEQELKKKYEELHKENQEMRKIMEEYEK   51 (207)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            34566666666666666666666666554

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=92.67  E-value=13  Score=37.74  Aligned_cols=59  Identities=15%  Similarity=0.248  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         190 RDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNH  248 (270)
Q Consensus       190 ~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e  248 (270)
                      .+.+|..+....+++...++.-...-..+...+..++..|...+..+..+...|..|..
T Consensus       352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lrk  410 (570)
T COG4477         352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRK  410 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34444455445555555555444444556666666666666666666666666666544

>PF13514 AAA_27: AAA domain

Probab=92.66  E-value=19  Score=39.61  Aligned_cols=105  Identities=21%  Similarity=0.333  Sum_probs=48.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------h-hHHHHHH----------HHHhhhhhchHHHHHHHHHH
Q psy5601          83 STANVEEWKKQLQAYKEENQKLKTKYIELEATKGV------S-EAAVELR----------KELTSVRSKNETLDSELKCR  145 (270)
Q Consensus        83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~------~-~~~~ele----------~e~~~l~~~~eele~eL~~~  145 (270)
                      ....+..+..+++.+......+...+..+-...+.      + ..+..|.          .....+...++.++.++...
T Consensus       741 ~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~  820 (1111)
T PF13514_consen  741 ALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQA  820 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555566666666666666665555332221      1 1222222          22233344455555555555


Q ss_pred             HHHHHHHHHhhHHhhhh--hhhhHH------HHHHHHHHHHhhHHHHHHh
Q psy5601         146 DEEVKKLTNAKHAVEDK--CKAAVE------LRKELTSVRSKNETLDSEL  187 (270)
Q Consensus       146 e~Eie~L~~qi~~LE~~--~~eipe------l~~e~~~L~~~l~~lE~~l  187 (270)
                      ...+..++.++..|-..  +.....      ...+...+..++..++..+
T Consensus       821 ~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l  870 (1111)
T PF13514_consen  821 EEELEELEAELAELLEQAGVEDEEELREAEERAEERRELREELEDLERQL  870 (1111)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555433  111112      2234455555555555555

>KOG4593|consensus

Probab=92.60  E-value=15  Score=38.32  Aligned_cols=54  Identities=15%  Similarity=0.126  Sum_probs=38.6

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHH
Q psy5601          81 QESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKC  144 (270)
Q Consensus        81 ~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~  144 (270)
                      .+....|.-|+.+++.|+..+-++..-+....          -++-++..+...+..|+.....
T Consensus       271 re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~----------~LELeN~~l~tkL~rwE~~~~~  324 (716)
T KOG4593|consen  271 RENRETVGLLQEELEGLQSKLGRLEKLQSTLL----------GLELENEDLLTKLQRWERADQE  324 (716)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHHhhh
Confidence            35667788888888888888777766654433          2446777888888888877665

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=92.55  E-value=14  Score=38.02  Aligned_cols=32  Identities=16%  Similarity=0.305  Sum_probs=14.3

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601          81 QESTANVEEWKKQLQAYKEENQKLKTKYIELE  112 (270)
Q Consensus        81 ~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele  112 (270)
                      .+....+.....++..++.+..++..++.++.
T Consensus       219 ~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~  250 (650)
T TIGR03185       219 KEQSEKYEDLAQEIAHLRNELEEAQRSLESLE  250 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.48  E-value=4.5  Score=36.62  Aligned_cols=49  Identities=12%  Similarity=0.283  Sum_probs=28.2

Q ss_pred             hhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHH
Q psy5601         130 SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRS  178 (270)
Q Consensus       130 ~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~  178 (270)
                      .+...+..++..+...+.++..|..++..++.- ..-.|-+...++.|..
T Consensus        67 ~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~  116 (251)
T PF11932_consen   67 NLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ  116 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333456666666666677777777777666554 3334555555554444

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.36  E-value=9.2  Score=35.42  Aligned_cols=66  Identities=12%  Similarity=0.284  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601          87 VEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA  158 (270)
Q Consensus        87 v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~  158 (270)
                      +..-...|..+..+-..+...|..+-.      -+.++-....++..+|++++..|..++.+|..++..|.+
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~------qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~   98 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDN------QIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE   98 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566777777777777777777776      556666777777777777777777777777776666643

>KOG4809|consensus

Probab=92.23  E-value=13  Score=37.84  Aligned_cols=48  Identities=19%  Similarity=0.216  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHH
Q psy5601         167 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQE  214 (270)
Q Consensus       167 pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r  214 (270)
                      --+++.+++|...+..+.++|.+.+--|..-+.+|-.+..++..+-+.
T Consensus       362 ~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~  409 (654)
T KOG4809|consen  362 IDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI  409 (654)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            335555566666666555555555544444444444444444444443

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=92.12  E-value=8.6  Score=34.52  Aligned_cols=124  Identities=18%  Similarity=0.237  Sum_probs=56.1

Q ss_pred             HHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhh---------H
Q psy5601         121 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCR---------D  191 (270)
Q Consensus       121 ~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~---------d  191 (270)
                      +.+|+.......+.+..|..++..+...+..+....          .....++...+..+..+...+...         .
T Consensus        80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p----------~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~  149 (240)
T PF12795_consen   80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRP----------ERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSE  149 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH----------HHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhH
Confidence            445555555555555555555555544444433333          223344455555555555555442         2


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5601         192 EEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRV  254 (270)
Q Consensus       192 ~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki  254 (270)
                      .....|..+...+..++.-+.....+.-.+..-+..+.+-+..+...+...+..|.+.+..+.
T Consensus       150 a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R  212 (240)
T PF12795_consen  150 AQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKR  212 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222223333333444444444444444444444444444444444444444444444444443

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=92.07  E-value=5.3  Score=32.03  Aligned_cols=31  Identities=26%  Similarity=0.207  Sum_probs=13.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         204 VEDKCKLLSQENAELQAAISLVQAQLDTLLA  234 (270)
Q Consensus       204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~  234 (270)
                      |.........++.+++.+|.++...|+.-+.
T Consensus        49 L~~q~~s~~qr~~eLqaki~ea~~~le~eK~   79 (107)
T PF09304_consen   49 LQAQNASRNQRIAELQAKIDEARRNLEDEKQ   79 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=92.04  E-value=3.9  Score=30.43  Aligned_cols=64  Identities=17%  Similarity=0.262  Sum_probs=29.0

Q ss_pred             HHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601         181 ETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA  251 (270)
Q Consensus       181 ~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld  251 (270)
                      +.||.++...-..|.-|+.+++.+..       ++..+...+..|..+...++..+......+..+.+.++
T Consensus         7 ~~LE~ki~~aveti~~Lq~e~eeLke-------~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~   70 (72)
T PF06005_consen    7 EQLEEKIQQAVETIALLQMENEELKE-------KNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34444444444444444444443333       33334444444444444455555555555555544443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG0249|consensus

Probab=91.97  E-value=18  Score=37.96  Aligned_cols=39  Identities=15%  Similarity=0.207  Sum_probs=18.7

Q ss_pred             hhcchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601          70 KSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKY  108 (270)
Q Consensus        70 k~~n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i  108 (270)
                      .+-|++|-.+|..-.+.|...+.....+++..+.+...+
T Consensus        90 ~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l  128 (916)
T KOG0249|consen   90 HDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKL  128 (916)
T ss_pred             ccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhh
Confidence            334555555555555555554444444444444443333

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=91.92  E-value=20  Score=38.40  Aligned_cols=19  Identities=26%  Similarity=0.324  Sum_probs=7.6

Q ss_pred             hhHHHHHHHHHHHHhhHHH
Q psy5601         165 AAVELRKELTSVRSKNETL  183 (270)
Q Consensus       165 eipel~~e~~~L~~~l~~l  183 (270)
                      .++.+...+..+...+..+
T Consensus       330 ~~~~~~~~~~~l~~~~~~l  348 (908)
T COG0419         330 RLEKLEEKLEKLESELEEL  348 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444433333

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=91.85  E-value=4.1  Score=30.30  Aligned_cols=62  Identities=16%  Similarity=0.239  Sum_probs=29.0

Q ss_pred             HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5601         196 KLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAEL  257 (270)
Q Consensus       196 ~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL  257 (270)
                      .|...+..+-+.|..+..++..+..++..|...-..++..-..++.+.....+.+++.+..|
T Consensus         8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl   69 (72)
T PF06005_consen    8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33334444444444444444444444444444444444444444444444444444444433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=91.82  E-value=9.6  Score=34.46  Aligned_cols=19  Identities=26%  Similarity=0.457  Sum_probs=8.9

Q ss_pred             HHHhhhhhchHHHHHHHHH
Q psy5601         126 KELTSVRSKNETLDSELKC  144 (270)
Q Consensus       126 ~e~~~l~~~~eele~eL~~  144 (270)
                      .....+....+.|..++..
T Consensus        27 ~~l~~~~~~~~~l~~~i~~   45 (302)
T PF10186_consen   27 SELQQLKEENEELRRRIEE   45 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444555554443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=91.74  E-value=14  Score=36.32  Aligned_cols=13  Identities=15%  Similarity=0.312  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q psy5601          89 EWKKQLQAYKEEN  101 (270)
Q Consensus        89 ~wk~qL~~l~een  101 (270)
                      +|..+|+.....+
T Consensus        42 q~q~ei~~~~~~i   54 (420)
T COG4942          42 QIQKEIAALEKKI   54 (420)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=91.51  E-value=18  Score=36.86  Aligned_cols=51  Identities=18%  Similarity=0.350  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q psy5601         167 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE  217 (270)
Q Consensus       167 pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~  217 (270)
                      ..+..++..|......+...+.+...--..+......+...+..++....+
T Consensus       347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~  397 (560)
T PF06160_consen  347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEE  397 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555554444444444333333333333333333333333333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=91.48  E-value=0.98  Score=38.43  Aligned_cols=13  Identities=23%  Similarity=0.488  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHHH
Q psy5601         142 LKCRDEEVKKLTN  154 (270)
Q Consensus       142 L~~~e~Eie~L~~  154 (270)
                      |..+..++..|..
T Consensus       118 i~~l~~e~~~l~~  130 (169)
T PF07106_consen  118 IEELEEEIEELEE  130 (169)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=91.46  E-value=20  Score=37.43  Aligned_cols=7  Identities=43%  Similarity=0.729  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q psy5601         137 TLDSELK  143 (270)
Q Consensus       137 ele~eL~  143 (270)
                      ++..++.
T Consensus       241 ~l~~ql~  247 (754)
T TIGR01005       241 ELNTELS  247 (754)
T ss_pred             HHHHHHH
Confidence            3333333

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=91.34  E-value=6.5  Score=31.55  Aligned_cols=23  Identities=13%  Similarity=0.169  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhhH
Q psy5601         169 LRKELTSVRSKNETLDSELKCRD  191 (270)
Q Consensus       169 l~~e~~~L~~~l~~lE~~l~~~d  191 (270)
                      |..+.+++...+.+|++.+.+.-
T Consensus        49 L~~q~~s~~qr~~eLqaki~ea~   71 (107)
T PF09304_consen   49 LQAQNASRNQRIAELQAKIDEAR   71 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444433

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=91.33  E-value=11  Score=36.83  Aligned_cols=42  Identities=5%  Similarity=-0.041  Sum_probs=25.8

Q ss_pred             HhhHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         199 NAKHAVEDKCKLLSQENAE-LQAAISLVQAQLDTLLASQDAQR  240 (270)
Q Consensus       199 ~e~e~l~~~~e~~~~r~~~-lE~~i~~LE~~Lee~~~~~~~~~  240 (270)
                      .++..|.+.+...+.|.+= ...+.+++..-|+..+.+...++
T Consensus       276 ~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE  318 (395)
T PF10267_consen  276 NEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE  318 (395)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3455566666555555554 56666667766777666666555

Its function is unknown.

>PF13514 AAA_27: AAA domain

Probab=91.31  E-value=26  Score=38.47  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=21.1

Q ss_pred             hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601          76 LTSALQESTANVEEWKKQLQAYKEENQKLKTKYI  109 (270)
Q Consensus        76 l~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~  109 (270)
                      +...+......+..|...+..++...........
T Consensus       678 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  711 (1111)
T PF13514_consen  678 LEEELQQLEQELEEAEAELQEAQEALEEWQEEWQ  711 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555566666677677776666666666555

>KOG0962|consensus

Probab=91.30  E-value=28  Score=38.84  Aligned_cols=89  Identities=16%  Similarity=0.246  Sum_probs=42.6

Q ss_pred             HhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601          82 ESTANVEEWKKQLQA---YKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA  158 (270)
Q Consensus        82 Es~a~v~~wk~qL~~---l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~  158 (270)
                      +....|...++.|.-   +++.-..++..|+....             ...+-+.++++++.++......|+.++.-+.+
T Consensus       196 d~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~-------------ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~e  262 (1294)
T KOG0962|consen  196 DQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQR-------------KIEKSKEEVSELENELGPIEAKIEEIEKSLKE  262 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            344445555554443   34444445555555443             22333345555555555555555555555555


Q ss_pred             hhhhhhhhHHHHHHHHHHHHhhHHH
Q psy5601         159 VEDKCKAAVELRKELTSVRSKNETL  183 (270)
Q Consensus       159 LE~~~~eipel~~e~~~L~~~l~~l  183 (270)
                      ++....++..+..+...+...+.++
T Consensus       263 l~k~~~~~~~l~~e~~~l~~~~~~l  287 (1294)
T KOG0962|consen  263 LEKLLKQVKLLDSEHKNLKKQISRL  287 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544334444444444444444433

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=91.24  E-value=1.4  Score=37.43  Aligned_cols=40  Identities=20%  Similarity=0.365  Sum_probs=15.5

Q ss_pred             HhhhhHHHHHHHHHh--hHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601         186 ELKCRDEEVKKLTNA--KHAVEDKCKLLSQENAELQAAISLV  225 (270)
Q Consensus       186 ~l~~~d~el~~L~~e--~e~l~~~~e~~~~r~~~lE~~i~~L  225 (270)
                      .+..+..++..|...  .+++...+..+..++..++.++..|
T Consensus        94 ~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l  135 (169)
T PF07106_consen   94 EVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL  135 (169)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444333  2334444444443333333333333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=91.08  E-value=8  Score=32.13  Aligned_cols=69  Identities=22%  Similarity=0.319  Sum_probs=32.6

Q ss_pred             HHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         181 ETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQ  249 (270)
Q Consensus       181 ~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~  249 (270)
                      +.+...+..++.++..|...++.+..++..++.++..++.+...+...+..+.......+.++..++..
T Consensus        55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~  123 (151)
T PF11559_consen   55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ  123 (151)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444444444444444444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition

Probab=91.07  E-value=0.62  Score=44.90  Aligned_cols=45  Identities=18%  Similarity=0.325  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhH
Q psy5601         169 LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQ  213 (270)
Q Consensus       169 l~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~  213 (270)
                      +..+++.++++|..+|.++......+..+...+..+.+.+.++++
T Consensus       142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn  186 (370)
T PF02994_consen  142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN  186 (370)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            444555555555555555554444444444334333333333333

Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.00  E-value=23  Score=37.28  Aligned_cols=30  Identities=10%  Similarity=0.293  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601         235 SQDAQRRIIDTLNHQLAGRVAELATIHREI  264 (270)
Q Consensus       235 ~~~~~~~El~~l~e~ld~ki~eL~el~~~l  264 (270)
                      ..+.++.-|+..-+.++..+.++..++..+
T Consensus       686 Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~  715 (717)
T PF10168_consen  686 QKRTIKEILKQQGEEIDELVKQIKNIKKIV  715 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345666777777777777887777776654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=90.95  E-value=9  Score=35.77  Aligned_cols=85  Identities=27%  Similarity=0.385  Sum_probs=50.9

Q ss_pred             chhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHH-----HHH
Q psy5601          73 NLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKC-----RDE  147 (270)
Q Consensus        73 n~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~-----~e~  147 (270)
                      +..--++||+-...|..++..|   ++...+|+.+    +                    .+|++|+.+|.+     +++
T Consensus        56 PEQYLTPLQQKEV~iRHLkakL---kes~~~l~dR----e--------------------tEI~eLksQL~RMrEDWIEE  108 (305)
T PF15290_consen   56 PEQYLTPLQQKEVCIRHLKAKL---KESENRLHDR----E--------------------TEIDELKSQLARMREDWIEE  108 (305)
T ss_pred             HHHhcChHHHHHHHHHHHHHHH---HHHHHHHHhh----H--------------------HHHHHHHHHHHHHHHHHHHH
Confidence            3345578999888998887544   4444444332    2                    356677777776     466


Q ss_pred             HHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHH
Q psy5601         148 EVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDE  192 (270)
Q Consensus       148 Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~  192 (270)
                      |..+..+|+        ..-+-+.+|.+|++-|+-.-+-|.++|.
T Consensus       109 ECHRVEAQL--------ALKEARkEIkQLkQvieTmrssL~ekDk  145 (305)
T PF15290_consen  109 ECHRVEAQL--------ALKEARKEIKQLKQVIETMRSSLAEKDK  145 (305)
T ss_pred             HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence            777777777        2233345555555555555555555553

>KOG0612|consensus

Probab=90.94  E-value=30  Score=38.42  Aligned_cols=13  Identities=15%  Similarity=0.245  Sum_probs=6.8

Q ss_pred             hhHHHHHHHHHhh
Q psy5601          17 RANTVSLVQAQLD   29 (270)
Q Consensus        17 ~an~~~~~~~~l~   29 (270)
                      .-+++|-|++.|.
T Consensus       432 ~~~~~~~le~~l~  444 (1317)
T KOG0612|consen  432 IHKTLQILEQSLV  444 (1317)
T ss_pred             cccchhhcccchh
Confidence            4455555555444

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=90.90  E-value=0.51  Score=44.76  Aligned_cols=8  Identities=25%  Similarity=0.364  Sum_probs=0.0

Q ss_pred             HHHHHHHH
Q psy5601          98 KEENQKLK  105 (270)
Q Consensus        98 ~een~rL~  105 (270)
                      .++...|+
T Consensus        34 ~eRLsaLE   41 (326)
T PF04582_consen   34 RERLSALE   41 (326)
T ss_dssp             --------
T ss_pred             HHHHHHHH
Confidence            33333333

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PRK11281 hypothetical protein; Provisional

Probab=90.86  E-value=30  Score=38.31  Aligned_cols=21  Identities=19%  Similarity=0.407  Sum_probs=9.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHH
Q psy5601         211 LSQENAELQAAISLVQAQLDT  231 (270)
Q Consensus       211 ~~~r~~~lE~~i~~LE~~Lee  231 (270)
                      +..+.+.++..+..|+..+..
T Consensus       232 ~~~~~~~~~~~~~~lq~~in~  252 (1113)
T PRK11281        232 LTARIQRLEHQLQLLQEAINS  252 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=90.85  E-value=5.3  Score=37.24  Aligned_cols=23  Identities=17%  Similarity=0.312  Sum_probs=12.6

Q ss_pred             HHHHHHhhhhHHHHHHHHHhhHH
Q psy5601         181 ETLDSELKCRDEEVKKLTNAKHA  203 (270)
Q Consensus       181 ~~lE~~l~~~d~el~~L~~e~e~  203 (270)
                      .+.+.++.+.|.||.+|+.++..
T Consensus        78 kes~~~l~dRetEI~eLksQL~R  100 (305)
T PF15290_consen   78 KESENRLHDRETEIDELKSQLAR  100 (305)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHH
Confidence            33444555566666666666433

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=90.79  E-value=21  Score=36.36  Aligned_cols=173  Identities=13%  Similarity=0.233  Sum_probs=93.0

Q ss_pred             HHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601          81 QESTANVEEWKKQLQAYK-EENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAV  159 (270)
Q Consensus        81 ~Es~a~v~~wk~qL~~l~-een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~L  159 (270)
                      .++.....+|+.....+. .....+...+-+.+.......        ....+..+..++..|..++..+..+...+..|
T Consensus        56 Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~r--------f~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L  127 (560)
T PF06160_consen   56 GQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYR--------FKKAKQAIKEIEEQLDEIEEDIKEILDELDEL  127 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777888888888877 567777777766665332211        12234566666677777777777777666655


Q ss_pred             hhh----hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHH
Q psy5601         160 EDK----CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE-----LQAAISLVQAQLD  230 (270)
Q Consensus       160 E~~----~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~-----lE~~i~~LE~~Le  230 (270)
                      -..    ...+..+.+....++..+-.--...+..-..   |...+..+.........-..+     +..-+..++..+.
T Consensus       128 ~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~---Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~  204 (560)
T PF06160_consen  128 LESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEE---LEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETD  204 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHH---HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            543    4445556666555555554332222222111   111222222222222221111     4555566666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601         231 TLLASQDAQRRIIDTLNHQLAGRVAELATIHREI  264 (270)
Q Consensus       231 e~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l  264 (270)
                      .+....+.+=.-+..+...+-..+.+|..-.+.|
T Consensus       205 ~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m  238 (560)
T PF06160_consen  205 ELEEIMEDIPKLYKELQKEFPDQLEELKEGYREM  238 (560)
T ss_pred             HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            6666666666666666666666666655554444

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=90.78  E-value=3.4  Score=37.80  Aligned_cols=56  Identities=18%  Similarity=0.303  Sum_probs=40.4

Q ss_pred             hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601         163 CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLV  225 (270)
Q Consensus       163 ~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~L  225 (270)
                      .+-.|.++.|.+..+.+..+||.+++.....+..|+.+++.       +...|-.|..+|+=|
T Consensus        78 ~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~-------L~~DN~kLYEKiRyl  133 (248)
T PF08172_consen   78 SSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVES-------LRADNVKLYEKIRYL  133 (248)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence            34568899999999999999998888877777666665554       444555555555544

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.73  E-value=3.2  Score=30.88  Aligned_cols=64  Identities=14%  Similarity=0.263  Sum_probs=49.9

Q ss_pred             hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy5601          76 LTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCR  145 (270)
Q Consensus        76 l~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~  145 (270)
                      |-...+.+-.-|--+..+++.+++.|..|....+++..      ..+.|+.++.+|+..-.-|...|+++
T Consensus         9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~------~reaL~~eneqlk~e~~~WQerlrsL   72 (79)
T COG3074           9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH------QREALERENEQLKEEQNGWQERLRAL   72 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666667788889999999999999998887665      56777788888888888887777664

>KOG0243|consensus

Probab=90.70  E-value=14  Score=40.22  Aligned_cols=96  Identities=23%  Similarity=0.264  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHH-----HHHHHHHHhhHHHHHHhhhhHHHHHHHHHh-------hHHHHH
Q psy5601         140 SELKCRDEEVKKLTNAKHAVEDK-CKAAVELR-----KELTSVRSKNETLDSELKCRDEEVKKLTNA-------KHAVED  206 (270)
Q Consensus       140 ~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~-----~e~~~L~~~l~~lE~~l~~~d~el~~L~~e-------~e~l~~  206 (270)
                      .-|.++-.||++|+..+..-... +-=||+-+     .+.......|++++..+.+++..|.++...       ...+..
T Consensus       404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~  483 (1041)
T KOG0243|consen  404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE  483 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34556777788887777544443 22233321     233444444555555555555444444332       233444


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         207 KCKLLSQENAELQAAISLVQAQLDTLLAS  235 (270)
Q Consensus       207 ~~e~~~~r~~~lE~~i~~LE~~Lee~~~~  235 (270)
                      +.+.+..++..-...+.+++..+..++..
T Consensus       484 ~~~~~k~~L~~~~~el~~~~ee~~~~~~~  512 (1041)
T KOG0243|consen  484 EKEKLKSKLQNKNKELESLKEELQQAKAT  512 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444333

>KOG0963|consensus

Probab=90.62  E-value=23  Score=36.53  Aligned_cols=79  Identities=14%  Similarity=0.236  Sum_probs=40.4

Q ss_pred             HHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601         122 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA  200 (270)
Q Consensus       122 ~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e  200 (270)
                      ..|-.....+...+..++.-+..++.-+.....+...++.. +.+.....+++.-+=.+++..-.++..++.++..|..+
T Consensus       185 ~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~q  264 (629)
T KOG0963|consen  185 AGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQ  264 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555555555555555555554 44444444444444455555555555555555555443

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=90.61  E-value=26  Score=37.14  Aligned_cols=89  Identities=18%  Similarity=0.143  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhhHHHHHHhh----hhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         169 LRKELTSVRSKNETLDSELK----CRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIID  244 (270)
Q Consensus       169 l~~e~~~L~~~l~~lE~~l~----~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~  244 (270)
                      .+++.-.+..-+.+-+..+-    .-+-+...++.++++.-..++.+.-+..+.+..+.-|.-.|...-.++.+++.=-+
T Consensus       467 q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR  546 (861)
T PF15254_consen  467 QKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTR  546 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHH
Confidence            34444444444444444443    22345555666777777777777777777777777777777766666665555555


Q ss_pred             HHHHHHhHHHHHH
Q psy5601         245 TLNHQLAGRVAEL  257 (270)
Q Consensus       245 ~l~e~ld~ki~eL  257 (270)
                      .|..-..+.+.+|
T Consensus       547 ~LQ~Sma~lL~dl  559 (861)
T PF15254_consen  547 TLQNSMAKLLSDL  559 (861)
T ss_pred             HHHHHHHHHhhhc
Confidence            5555555544443

>KOG1937|consensus

Probab=90.38  E-value=20  Score=35.63  Aligned_cols=128  Identities=15%  Similarity=0.207  Sum_probs=65.9

Q ss_pred             HHHHHHHHhhhhhchHHHHHHHHH----HHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHH
Q psy5601         121 AVELRKELTSVRSKNETLDSELKC----RDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKK  196 (270)
Q Consensus       121 ~~ele~e~~~l~~~~eele~eL~~----~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~  196 (270)
                      +..|.-....++.+|..+..+...    .....-.|+.+...++.+++++.    .+..+...+..+..++...+..-..
T Consensus       295 LaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~----~IqeleqdL~a~~eei~~~eel~~~  370 (521)
T KOG1937|consen  295 LAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIR----RIQELEQDLEAVDEEIESNEELAEK  370 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            444444445555555555555443    33344445555555554433322    2344444444444444444444445


Q ss_pred             HHHhhHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5601         197 LTNAKHAVED--KCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAG  252 (270)
Q Consensus       197 L~~e~e~l~~--~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~  252 (270)
                      |+.+.+.+..  .+-....++.+.-.-|+-.+.++-.....-.+++.+....-+.++.
T Consensus       371 Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R  428 (521)
T KOG1937|consen  371 LRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR  428 (521)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5555544333  2445566666666666666666666666666666565555555543

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=90.15  E-value=3.7  Score=31.19  Aligned_cols=64  Identities=16%  Similarity=0.278  Sum_probs=49.5

Q ss_pred             hhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy5601          76 LTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCR  145 (270)
Q Consensus        76 l~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~  145 (270)
                      |-+..+.+-..|.-+.++++.+++.|..|...+..+..      .-.+|..++.+++..-..|...|..+
T Consensus         9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~------~r~~L~~en~qLk~E~~~WqerLr~L   72 (79)
T PRK15422          9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH------QREELERENNHLKEQQNGWQERLQAL   72 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667777889999999999999999999888665      44556678888888888887777654

>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin

Probab=90.12  E-value=7.6  Score=34.58  Aligned_cols=32  Identities=16%  Similarity=0.213  Sum_probs=17.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         206 DKCKLLSQENAELQAAISLVQAQLDTLLASQD  237 (270)
Q Consensus       206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~  237 (270)
                      +.+-.+..|++++|.+|+.|+.+|-++-.-..
T Consensus       129 eel~~a~~K~qemE~RIK~LhaqI~EKDAmIk  160 (205)
T PF12240_consen  129 EELHMANRKCQEMENRIKALHAQIAEKDAMIK  160 (205)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555566666666666655544433

Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=89.98  E-value=23  Score=35.72  Aligned_cols=52  Identities=17%  Similarity=0.254  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHhhc
Q psy5601         218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGR--------VAELATIHREINTALQ  269 (270)
Q Consensus       218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~k--------i~eL~el~~~l~~~~~  269 (270)
                      +...+..+...++.+-...+.+.......+..++.+        +.++..+|++|+++|.
T Consensus       410 ~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLs  469 (531)
T PF15450_consen  410 MEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLS  469 (531)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555554444444555555544        4578888899988764

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=89.94  E-value=2.5  Score=33.10  Aligned_cols=55  Identities=22%  Similarity=0.312  Sum_probs=37.0

Q ss_pred             HHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhh
Q psy5601         147 EEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK  201 (270)
Q Consensus       147 ~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~  201 (270)
                      .+...+.++|..+...+.....+..++..+...|..++..+...+.++..+...+
T Consensus        50 ~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~i  104 (108)
T PF02403_consen   50 AERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSI  104 (108)
T ss_dssp             HHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred             HHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3333344444444443456777888888888888888888888888877765544

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=89.74  E-value=6.8  Score=32.31  Aligned_cols=57  Identities=12%  Similarity=0.305  Sum_probs=27.8

Q ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601         176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL  232 (270)
Q Consensus       176 L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~  232 (270)
                      |..+|+.+...++...+-....+.++..+...+.............|..|+..|..+
T Consensus        66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i  122 (126)
T PF07889_consen   66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI  122 (126)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444455555555555555555555555555555443

The region featured in this family is approximately 100 amino acids long.

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=89.51  E-value=3.3  Score=30.57  Aligned_cols=26  Identities=19%  Similarity=0.354  Sum_probs=11.4

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHHHHH
Q psy5601         129 TSVRSKNETLDSELKCRDEEVKKLTN  154 (270)
Q Consensus       129 ~~l~~~~eele~eL~~~e~Eie~L~~  154 (270)
                      ..|...++.+...+..++.++..|+.
T Consensus         8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~   33 (69)
T PF14197_consen    8 ATLRNRLDSLTRKNSVHEIENKRLRR   33 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=89.46  E-value=11  Score=31.14  Aligned_cols=35  Identities=17%  Similarity=0.278  Sum_probs=15.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601         192 EEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQ  226 (270)
Q Consensus       192 ~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE  226 (270)
                      .++..++..++.+..++..+......|+.+|..++
T Consensus        89 ~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie  123 (126)
T PF07889_consen   89 DEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE  123 (126)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33334444444444444444444444444444443

The region featured in this family is approximately 100 amino acids long.

>KOG0249|consensus

Probab=89.20  E-value=32  Score=36.23  Aligned_cols=24  Identities=13%  Similarity=0.156  Sum_probs=11.6

Q ss_pred             HHHHHHHHHhhhhhchHHHHHHHH
Q psy5601         120 AAVELRKELTSVRSKNETLDSELK  143 (270)
Q Consensus       120 ~~~ele~e~~~l~~~~eele~eL~  143 (270)
                      .+-.+++.+.++..+|+..+..+.
T Consensus       106 ~lrq~eekn~slqerLelaE~~l~  129 (916)
T KOG0249|consen  106 DLRQNEEKNRSLQERLELAEPKLQ  129 (916)
T ss_pred             hhchhHHhhhhhhHHHHHhhHhhH
Confidence            334444555555555555444443

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=89.03  E-value=41  Score=37.23  Aligned_cols=29  Identities=14%  Similarity=0.142  Sum_probs=15.8

Q ss_pred             HHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q psy5601         121 AVELRKELTSVRSKNETLDSELKCRDEEV  149 (270)
Q Consensus       121 ~~ele~e~~~l~~~~eele~eL~~~e~Ei  149 (270)
                      ..+|+....+..+.+.++..++.......
T Consensus       104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~  132 (1109)
T PRK10929        104 TDALEQEILQVSSQLLEKSRQAQQEQDRA  132 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            34555555555555666666665544444

>KOG0804|consensus

Probab=88.96  E-value=26  Score=34.85  Aligned_cols=26  Identities=23%  Similarity=0.438  Sum_probs=10.6

Q ss_pred             HHHHHHHhhHHHHHHhhhhHHHHHHH
Q psy5601         172 ELTSVRSKNETLDSELKCRDEEVKKL  197 (270)
Q Consensus       172 e~~~L~~~l~~lE~~l~~~d~el~~L  197 (270)
                      +++++......++++-...+..+..+
T Consensus       362 e~~~l~~~~~~~e~~kk~~e~k~~q~  387 (493)
T KOG0804|consen  362 EADSLKQESSDLEAEKKIVERKLQQL  387 (493)
T ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence            33444444444444444443333333

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=88.84  E-value=2.9  Score=37.88  Aligned_cols=28  Identities=21%  Similarity=0.261  Sum_probs=13.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601         134 KNETLDSELKCRDEEVKKLTNAKHAVED  161 (270)
Q Consensus       134 ~~eele~eL~~~e~Eie~L~~qi~~LE~  161 (270)
                      ..++++..++....|...|.++.+++++
T Consensus       136 ~~ee~kekl~E~~~EkeeL~~eleele~  163 (290)
T COG4026         136 DYEELKEKLEELQKEKEELLKELEELEA  163 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444455445555555555544443

>KOG0982|consensus

Probab=88.84  E-value=26  Score=34.69  Aligned_cols=72  Identities=11%  Similarity=0.112  Sum_probs=40.3

Q ss_pred             hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         163 CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLA  234 (270)
Q Consensus       163 ~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~  234 (270)
                      .+.+|-|+..++.|.....+....|..+--.|...+.......+.+-..+.++.+.+.=|.+|..+|+.++.
T Consensus       317 Rs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~  388 (502)
T KOG0982|consen  317 RSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRR  388 (502)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            344566666666666666666666666655555555444444444444555555555555555555555443

>KOG0288|consensus

Probab=88.82  E-value=23  Score=34.90  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=11.3

Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601         132 RSKNETLDSELKCRDEEVKKLTNAK  156 (270)
Q Consensus       132 ~~~~eele~eL~~~e~Eie~L~~qi  156 (270)
                      .+++..+...|+.++.-.+.+..|.
T Consensus        12 dqr~~~~~~~laq~~k~~s~~~aq~   36 (459)
T KOG0288|consen   12 DQRLIDLNTELAQCEKAQSRLSAQL   36 (459)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444433

>KOG0804|consensus

Probab=88.63  E-value=14  Score=36.76  Aligned_cols=29  Identities=31%  Similarity=0.377  Sum_probs=12.3

Q ss_pred             HHHHHHhhhhhchHHHHHHHHHHHHHHHH
Q psy5601         123 ELRKELTSVRSKNETLDSELKCRDEEVKK  151 (270)
Q Consensus       123 ele~e~~~l~~~~eele~eL~~~e~Eie~  151 (270)
                      .++....++...+..|..++....++...
T Consensus       379 ~~e~k~~q~q~k~~k~~kel~~~~E~n~~  407 (493)
T KOG0804|consen  379 IVERKLQQLQTKLKKCQKELKEEREENKK  407 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444433333

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=88.62  E-value=5.1  Score=30.01  Aligned_cols=69  Identities=29%  Similarity=0.279  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601          88 EEWKKQLQAYKEENQKLKTKYIELEATK--GVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK  156 (270)
Q Consensus        88 ~~wk~qL~~l~een~rL~~~i~Ele~~~--~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi  156 (270)
                      +..+.+|..++-+|-.|+-+|--++..-  ..|.....+..++.+++..+..+..++..+..-+..+.+.+
T Consensus         3 rEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~   73 (75)
T PF07989_consen    3 REQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI   73 (75)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556778888888888888887666532  23556777777777777777777777777766666555544

>KOG1899|consensus

Probab=88.62  E-value=7.9  Score=39.97  Aligned_cols=28  Identities=14%  Similarity=0.157  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5601         239 QRRIIDTLNHQLAGRVAELATIHREINT  266 (270)
Q Consensus       239 ~~~El~~l~e~ld~ki~eL~el~~~l~~  266 (270)
                      .+.++..|++++..|-++...+|..|+.
T Consensus       236 tk~e~a~L~Eq~~eK~~e~~rl~~~lv~  263 (861)
T KOG1899|consen  236 TKGEMAPLREQRSEKNDEEMRLLRTLVQ  263 (861)
T ss_pred             ccchhhhHHHHHhhhhhHHHHHHHHHHH
Confidence            3457788888999998888888877753

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=88.28  E-value=23  Score=33.49  Aligned_cols=124  Identities=20%  Similarity=0.239  Sum_probs=57.8

Q ss_pred             hhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH
Q psy5601          75 RLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTN  154 (270)
Q Consensus        75 rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~  154 (270)
                      .|...+......-...+.++..++..+..|...+..+-........-.+.+++..+     -.|=..|+....+-+.|-.
T Consensus        24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is-----N~LlKkl~~l~keKe~L~~   98 (310)
T PF09755_consen   24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFIS-----NTLLKKLQQLKKEKETLAL   98 (310)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence            34444444444445556666666666666666555544322222222222222110     0111222222222222222


Q ss_pred             hhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhh-hHHHHHHHHHhhHHHHH
Q psy5601         155 AKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKC-RDEEVKKLTNAKHAVED  206 (270)
Q Consensus       155 qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~-~d~el~~L~~e~e~l~~  206 (270)
                      .+   +.. ..-.+.|...+..|+.+--++|..+.. .+..++.|+..|..+..
T Consensus        99 ~~---e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~  149 (310)
T PF09755_consen   99 KY---EQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEK  149 (310)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            22   111 233466777777777777777777765 44556666666655543

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=88.25  E-value=33  Score=35.12  Aligned_cols=52  Identities=15%  Similarity=0.191  Sum_probs=37.6

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhh
Q psy5601          81 QESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVR  132 (270)
Q Consensus        81 ~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~  132 (270)
                      ..+...+..+...-.....+.+.|+=++.|++.-.-++++.++|..++..|.
T Consensus       167 ~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLs  218 (557)
T COG0497         167 KQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLS  218 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Confidence            3444555566666666677778888899999987778888887877776554

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=87.92  E-value=46  Score=36.46  Aligned_cols=17  Identities=6%  Similarity=0.192  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHhhHHHHH
Q psy5601         169 LRKELTSVRSKNETLDS  185 (270)
Q Consensus       169 l~~e~~~L~~~l~~lE~  185 (270)
                      +..++..+...+..+..
T Consensus       782 l~~~i~~~~~~~~~~~~  798 (1047)
T PRK10246        782 LEQLKQNLENQRQQAQT  798 (1047)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444443333333

>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif

Probab=87.75  E-value=6.2  Score=31.44  Aligned_cols=63  Identities=25%  Similarity=0.286  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHH
Q psy5601          84 TANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKL  152 (270)
Q Consensus        84 ~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L  152 (270)
                      .+.+..|+.=+=..+..+..|...+...+.      .+.-++.++.+|..+-++|...+..++.|+...
T Consensus        11 raQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~------~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~   73 (102)
T PF10205_consen   11 RAQNQVLKKAVIEEQAKNAELKEQLKEKEQ------ALRKLEQENDSLTFRNQQLTKRVEVLQEELEES   73 (102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344445555555566777777777777776      677777888888888888888888888888743

This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.

>PF13166 AAA_13: AAA domain

Probab=87.47  E-value=37  Score=34.93  Aligned_cols=74  Identities=18%  Similarity=0.304  Sum_probs=37.3

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHhhHHhhhh---hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHH
Q psy5601         133 SKNETLDSELKCRDEEVKKLTNAKHAVEDK---CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED  206 (270)
Q Consensus       133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~~---~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~  206 (270)
                      ....++...+..+...+..+...+..--..   .-.++.+...+..+...+..+...+...+..+..+......+..
T Consensus       322 ~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~  398 (712)
T PF13166_consen  322 EDKEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKD  398 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666655555432111   12223344444555555555555555555555555444444333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=87.40  E-value=31  Score=33.87  Aligned_cols=134  Identities=12%  Similarity=0.133  Sum_probs=61.8

Q ss_pred             HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601         126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE  205 (270)
Q Consensus       126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~  205 (270)
                      ..+.++.+..+.|-+.-..++.-...|+.++-+|......|..--..+.--..-++..+.++.+...-...+...+....
T Consensus       158 ~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd  237 (499)
T COG4372         158 EQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD  237 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33343333333333333333333334444444444333333332222222223333333333333333333333343344


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy5601         206 DKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHRE  263 (270)
Q Consensus       206 ~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~  263 (270)
                      ..+......++.-...|..-+.+|..++..+.-++.++..    ++.--..+.+++.+
T Consensus       238 ~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~----le~yyQ~y~~lr~q  291 (499)
T COG4372         238 AQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQ----LEAYYQAYVRLRQQ  291 (499)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence            4444444555556667777777777777777766555544    45555566666544

>KOG0982|consensus

Probab=87.35  E-value=32  Score=34.06  Aligned_cols=39  Identities=26%  Similarity=0.193  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHH
Q psy5601         167 VELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVE  205 (270)
Q Consensus       167 pel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~  205 (270)
                      ..|..+++.|+..+.+|-+-++.+.++...+-..++.+.
T Consensus       307 qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr  345 (502)
T KOG0982|consen  307 QQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR  345 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            334444555555555554444444444433333333333

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=87.08  E-value=22  Score=31.76  Aligned_cols=103  Identities=14%  Similarity=0.124  Sum_probs=59.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh-----------h
Q psy5601         134 KNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA-----------K  201 (270)
Q Consensus       134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e-----------~  201 (270)
                      .++.|+..+.....-++-+.-++..|+-- .-+.+.-.-.+..|..-+..++..+..+..+|.++...           +
T Consensus        98 d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L  177 (221)
T PF05700_consen   98 DVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEEL  177 (221)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            67888888888777777777788777644 23334444555666666666666666666555555443           2


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         202 HAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQ  236 (270)
Q Consensus       202 e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~  236 (270)
                      ..|..+-.....+|-+++..+..|+.++..++...
T Consensus       178 ~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~  212 (221)
T PF05700_consen  178 RYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKA  212 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23444444444444445555555555554444433

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.94  E-value=44  Score=35.21  Aligned_cols=15  Identities=13%  Similarity=0.118  Sum_probs=5.3

Q ss_pred             HHHHHhHHHHHHHHH
Q psy5601         207 KCKLLSQENAELQAA  221 (270)
Q Consensus       207 ~~e~~~~r~~~lE~~  221 (270)
                      ++..+..++..+..+
T Consensus       647 ~l~~l~~si~~lk~k  661 (717)
T PF10168_consen  647 QLQDLKASIEQLKKK  661 (717)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=86.90  E-value=7.8  Score=28.83  Aligned_cols=22  Identities=18%  Similarity=0.406  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHhh
Q psy5601         139 DSELKCRDEEVKKLTNAKHAVE  160 (270)
Q Consensus       139 e~eL~~~e~Eie~L~~qi~~LE  160 (270)
                      ...|..+++.|..|...-+.|.
T Consensus         4 ~~~l~EKDe~Ia~L~eEGekLS   25 (74)
T PF12329_consen    4 EKKLAEKDEQIAQLMEEGEKLS   25 (74)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHH
Confidence            3344445555544444443333

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=86.58  E-value=6.5  Score=31.19  Aligned_cols=28  Identities=14%  Similarity=0.222  Sum_probs=11.2

Q ss_pred             HHHHhhHHHHHHhhhh--HHHHHHHHHhhH
Q psy5601         175 SVRSKNETLDSELKCR--DEEVKKLTNAKH  202 (270)
Q Consensus       175 ~L~~~l~~lE~~l~~~--d~el~~L~~e~e  202 (270)
                      .+..++..+|.++++.  ..+++.|+..+.
T Consensus        46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~   75 (106)
T PF10805_consen   46 EHDRRLQALETKLEHLPTRDDVHDLQLELA   75 (106)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            3334444444444443  333444433333

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PRK11281 hypothetical protein; Provisional

Probab=85.95  E-value=62  Score=35.92  Aligned_cols=123  Identities=10%  Similarity=0.029  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhH---
Q psy5601         137 TLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQ---  213 (270)
Q Consensus       137 ele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~---  213 (270)
                      .|.+++..++.++.-++....   ....-..-++.+.+-+..++..++..+..++.-|+.-+....+  ..++.+..   
T Consensus       196 ~l~ae~~~l~~~~~~~~~~l~---~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se--~~~~~a~~~~~  270 (1113)
T PRK11281        196 LLQAEQALLNAQNDLQRKSLE---GNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSE--KTVQEAQSQDE  270 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhh
Confidence            344444444444444433331   1133344567777888888888888888888888875444211  11111111   


Q ss_pred             ------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601         214 ------E--NAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI  264 (270)
Q Consensus       214 ------r--~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l  264 (270)
                            .  .+..-..+..|=..|...-.+...+..+....+..++......+.++..+
T Consensus       271 ~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi  329 (1113)
T PRK11281        271 AARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI  329 (1113)
T ss_pred             hcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0  22233445666666666666666666677777777777777777666655

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=85.76  E-value=26  Score=31.40  Aligned_cols=33  Identities=12%  Similarity=0.306  Sum_probs=16.2

Q ss_pred             HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601         126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHA  158 (270)
Q Consensus       126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~  158 (270)
                      +........++..-..+.+....+..++.++..
T Consensus       106 ~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~  138 (240)
T PF12795_consen  106 SQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN  138 (240)
T ss_pred             HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333444445555555555555555555555433

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=85.62  E-value=21  Score=30.17  Aligned_cols=27  Identities=19%  Similarity=0.281  Sum_probs=18.5

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601         133 SKNETLDSELKCRDEEVKKLTNAKHAV  159 (270)
Q Consensus       133 ~~~eele~eL~~~e~Eie~L~~qi~~L  159 (270)
                      .+++++-+++.-++.+++.|+.++..|
T Consensus         6 ~~le~l~a~lq~l~~qie~L~~~i~~l   32 (145)
T COG1730           6 QELEELAAQLQILQSQIESLQAQIAAL   32 (145)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777777777777777777777333

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=85.56  E-value=31  Score=32.06  Aligned_cols=64  Identities=13%  Similarity=0.179  Sum_probs=32.4

Q ss_pred             HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5601         197 LTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATI  260 (270)
Q Consensus       197 L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el  260 (270)
                      +..++..+...+..+...-+.|+.+|+....+|+-.+.+...++.-.=-+.++.++.-.+|..+
T Consensus       174 ~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l  237 (267)
T PF10234_consen  174 VQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL  237 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            3344455555555555555556666666555555555555544443333444444444444333

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=85.38  E-value=22  Score=31.09  Aligned_cols=54  Identities=19%  Similarity=0.176  Sum_probs=26.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5601         204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAEL  257 (270)
Q Consensus       204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL  257 (270)
                      +-.++++...|+.+|..-+.-|..+|+.+...-+.+..++..+........++|
T Consensus        65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL  118 (182)
T PF15035_consen   65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDEL  118 (182)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455555555555555555555555555555555444444433333

>KOG4809|consensus

Probab=85.27  E-value=47  Score=33.95  Aligned_cols=108  Identities=18%  Similarity=0.281  Sum_probs=66.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q psy5601          83 STANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK  162 (270)
Q Consensus        83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~  162 (270)
                      -...|+..+++...+++-...|+..+.+.++      .+.-|.....+|.+....+...|...+.-++.-+..+...+++
T Consensus       329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~------sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~q  402 (654)
T KOG4809|consen  329 RLEEIESFRKENKDLKEKVNALQAELTEKES------SLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQ  402 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            3455777888888888888888887777776      5555667777777766666666555443333333333333332


Q ss_pred             ----------hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHH
Q psy5601         163 ----------CKAAVELRKELTSVRSKNETLDSELKCRDEEVKK  196 (270)
Q Consensus       163 ----------~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~  196 (270)
                                .--.|+..+++-.|..++...++.+.....+...
T Consensus       403 LkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdr  446 (654)
T KOG4809|consen  403 LKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDR  446 (654)
T ss_pred             HHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1123666677777777777766666665555444

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=85.22  E-value=25  Score=30.83  Aligned_cols=40  Identities=18%  Similarity=0.248  Sum_probs=29.7

Q ss_pred             hhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601          74 LRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEA  113 (270)
Q Consensus        74 ~rl~~al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~  113 (270)
                      .-|.-++.+....+.+++..+........+|...+.+...
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~   65 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEE   65 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667777888888888888887777777777777664

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=85.11  E-value=68  Score=35.62  Aligned_cols=120  Identities=12%  Similarity=0.052  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHhhHHhhhh----hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhh-HHHHHHHHH-------Hh
Q psy5601         145 RDEEVKKLTNAKHAVEDK----CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK-HAVEDKCKL-------LS  212 (270)
Q Consensus       145 ~e~Eie~L~~qi~~LE~~----~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~-e~l~~~~e~-------~~  212 (270)
                      ++.|..-+..++..++..    ..-..-.+.+.+-+..++..++..+..+...||..+..- +..-++.+.       ..
T Consensus       178 lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~  257 (1109)
T PRK10929        178 LQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLP  257 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCC
Confidence            344444444444444433    334455667778888888888888888888888765541 111111111       11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601         213 QENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI  264 (270)
Q Consensus       213 ~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l  264 (270)
                      .-++..-..+..|=..|...-.+...+..+....+..++.....++.++..+
T Consensus       258 ~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi  309 (1109)
T PRK10929        258 KSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS  309 (1109)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1223333456666677777777777777777777777777777777777665

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=84.85  E-value=39  Score=32.66  Aligned_cols=43  Identities=14%  Similarity=0.218  Sum_probs=25.7

Q ss_pred             hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHH
Q psy5601         166 AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKC  208 (270)
Q Consensus       166 ipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~  208 (270)
                      +..+..++..++.++..+-.++...-..+..++.+++.+...+
T Consensus       256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l  298 (444)
T TIGR03017       256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQL  298 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence            4456666666666666666666655555555555555554443

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PLN02939 transferase, transferring glycosyl groups

Probab=84.82  E-value=65  Score=35.20  Aligned_cols=60  Identities=28%  Similarity=0.263  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHhhhhhchHHHHHHHHHH
Q psy5601          86 NVEEWKKQLQAYKEENQKLKTKYIELEATKG----VSEAAVELRKELTSVRSKNETLDSELKCR  145 (270)
Q Consensus        86 ~v~~wk~qL~~l~een~rL~~~i~Ele~~~~----~~~~~~ele~e~~~l~~~~eele~eL~~~  145 (270)
                      +|.-+-.+|..++++|--|+..|+-+.+...    -...+--++.++.-|.+.+.+|+..+..-
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (977)
T PLN02939        220 CVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVA  283 (977)
T ss_pred             ccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555666777777777777766654443111    11234445566666666666666666543

>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain

Probab=84.66  E-value=0.11  Score=41.04  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=20.5

Q ss_pred             CcccccccccccchhhhhHHHHHH
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSLV   24 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~~   24 (270)
                      |.|++++.+|.+|+|.  +.+|||
T Consensus        64 ~~y~~~~~~Fh~w~~~--~~~~GL   85 (104)
T cd00837          64 LKYTQATPFFHQWEDD--NCVYGL   85 (104)
T ss_pred             cEEeecCCeEEEEEcC--CcEEEE
Confidence            6899999999999998  779999

EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=84.31  E-value=26  Score=30.11  Aligned_cols=25  Identities=32%  Similarity=0.405  Sum_probs=11.9

Q ss_pred             hhhHHHHHHHHHHHHhhHHHHHHhh
Q psy5601         164 KAAVELRKELTSVRSKNETLDSELK  188 (270)
Q Consensus       164 ~eipel~~e~~~L~~~l~~lE~~l~  188 (270)
                      +.+..++.+.+.|+.+++.+..+++
T Consensus        73 ~~~~~lr~~~e~L~~eie~l~~~L~   97 (177)
T PF07798_consen   73 SEFAELRSENEKLQREIEKLRQELR   97 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555555555544443

>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events

Probab=84.18  E-value=0.078  Score=42.26  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             CcccccccccccchhhhhHHHHHH
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSLV   24 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~~   24 (270)
                      |+|++++..|++|.|.+.  +|||
T Consensus        71 ~~Y~~~~~~Fh~f~~~~~--~~GL   92 (111)
T PF00568_consen   71 FVYTKARPFFHQFEDDDC--VYGL   92 (111)
T ss_dssp             -EEEEESSSEEEEEETTC--EEEE
T ss_pred             CEEEeCCCcEEEEEeCCe--EEEE
Confidence            789999999999999976  9999

This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=83.73  E-value=24  Score=29.27  Aligned_cols=15  Identities=7%  Similarity=0.271  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHHH
Q psy5601         218 LQAAISLVQAQLDTL  232 (270)
Q Consensus       218 lE~~i~~LE~~Lee~  232 (270)
                      ....++-.+.+++.+
T Consensus       131 ~~~e~rkke~E~~kL  145 (151)
T PF11559_consen  131 YEHELRKKEREIEKL  145 (151)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition

Probab=83.71  E-value=3.7  Score=39.61  Aligned_cols=16  Identities=13%  Similarity=0.304  Sum_probs=5.7

Q ss_pred             HHHhhHHHHHHhhhhH
Q psy5601         176 VRSKNETLDSELKCRD  191 (270)
Q Consensus       176 L~~~l~~lE~~l~~~d  191 (270)
                      |..+|..+|.++.+++
T Consensus       142 l~~Ri~e~Eeris~lE  157 (370)
T PF02994_consen  142 LNSRIDELEERISELE  157 (370)
T ss_dssp             --HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHH
Confidence            3444444443333333

Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=83.25  E-value=45  Score=32.10  Aligned_cols=27  Identities=19%  Similarity=0.156  Sum_probs=12.2

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601         133 SKNETLDSELKCRDEEVKKLTNAKHAV  159 (270)
Q Consensus       133 ~~~eele~eL~~~e~Eie~L~~qi~~L  159 (270)
                      ..+..|+.-+...++|...|+-++..+
T Consensus       127 ~~~q~LE~li~~~~EEn~~lqlqL~~l  153 (401)
T PF06785_consen  127 GDIQHLEGLIRHLREENQCLQLQLDAL  153 (401)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            344444444444444444444444333

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=82.94  E-value=42  Score=31.60  Aligned_cols=93  Identities=18%  Similarity=0.282  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         168 ELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLN  247 (270)
Q Consensus       168 el~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~  247 (270)
                      .|+.++..-.++...+.+.|..-+.-....+.+++.+..++..++..+..+..+-......|-++-........++..  
T Consensus       213 ~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~--  290 (309)
T PF09728_consen  213 ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEK--  290 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--
Confidence            455555555666666777777777777777777777777777777777777766666666666666655544444444  


Q ss_pred             HHHhHHHHHHHHHHHHH
Q psy5601         248 HQLAGRVAELATIHREI  264 (270)
Q Consensus       248 e~ld~ki~eL~el~~~l  264 (270)
                        +..++.-|..|.+.|
T Consensus       291 --~~~k~~kLe~LcRaL  305 (309)
T PF09728_consen  291 --LKKKIEKLEKLCRAL  305 (309)
T ss_pred             --HHHHHHHHHHHHHHH
Confidence              344444454444443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>TIGR02231 conserved hypothetical protein

Probab=82.38  E-value=20  Score=35.88  Aligned_cols=30  Identities=13%  Similarity=0.289  Sum_probs=16.8

Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601         132 RSKNETLDSELKCRDEEVKKLTNAKHAVED  161 (270)
Q Consensus       132 ~~~~eele~eL~~~e~Eie~L~~qi~~LE~  161 (270)
                      ...+.+|+.+|..++.++..++.++..++.
T Consensus        70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~   99 (525)
T TIGR02231        70 PERLAELRKQIRELEAELRDLEDRGDALKA   99 (525)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666655555544443

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=82.33  E-value=36  Score=30.37  Aligned_cols=30  Identities=23%  Similarity=0.366  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHH---HHHHHHHHHH
Q psy5601         235 SQDAQRRIIDTLNHQLAGRV---AELATIHREI  264 (270)
Q Consensus       235 ~~~~~~~El~~l~e~ld~ki---~eL~el~~~l  264 (270)
                      .+...+-.+..|...++.|.   .+|+.+.++|
T Consensus       169 ~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL  201 (207)
T PF05010_consen  169 SLKKEEMKVQSLEESLEQKTKENEELTKICDEL  201 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444433   3455555554

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>TIGR02231 conserved hypothetical protein

Probab=82.32  E-value=25  Score=35.16  Aligned_cols=77  Identities=13%  Similarity=0.164  Sum_probs=36.1

Q ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhH
Q psy5601          79 ALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKH  157 (270)
Q Consensus        79 al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~  157 (270)
                      ++.+....+..++.++..++++...+..++.=++..+...  ...+......-...+.+|..-+..+..++..+..++.
T Consensus        72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (525)
T TIGR02231        72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGL--TEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDR  148 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555555555554443311000  0000000000023567777777777777776666663

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=82.31  E-value=34  Score=30.05  Aligned_cols=19  Identities=32%  Similarity=0.555  Sum_probs=9.6

Q ss_pred             CcccccccccccchhhhhHHHH
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVS   22 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~   22 (270)
                      +.|+|||.-   |...=+-=||
T Consensus         3 ~pF~K~s~~---W~~~E~mevf   21 (190)
T PF05266_consen    3 LPFVKKSPV---WKTIESMEVF   21 (190)
T ss_pred             CCcccccch---hHHHHHHHHH
Confidence            357776653   4444444444

>KOG4005|consensus

Probab=82.17  E-value=16  Score=33.40  Aligned_cols=63  Identities=24%  Similarity=0.326  Sum_probs=45.7

Q ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         175 SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQD  237 (270)
Q Consensus       175 ~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~  237 (270)
                      .-+.+++++|..++++..+-..|+.+++.|...-..+-.++.++-..+..+...|.+++...-
T Consensus        87 rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~  149 (292)
T KOG4005|consen   87 RKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ  149 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence            334566667777777777777777778888887777777777777777777777777766544

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=82.01  E-value=54  Score=32.17  Aligned_cols=27  Identities=15%  Similarity=0.325  Sum_probs=11.6

Q ss_pred             hhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601         130 SVRSKNETLDSELKCRDEEVKKLTNAK  156 (270)
Q Consensus       130 ~l~~~~eele~eL~~~e~Eie~L~~qi  156 (270)
                      .+...+..+..++..++.++..++...
T Consensus       169 ~~~~~~~~~~~~i~~~~~~~~~~~~~~  195 (457)
T TIGR01000       169 AAEKTKAQLDQQISKTDQKLQDYQALK  195 (457)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=82.01  E-value=15  Score=31.17  Aligned_cols=52  Identities=17%  Similarity=0.344  Sum_probs=31.0

Q ss_pred             hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH---hhHHHHHHHHHHhHHHH
Q psy5601         165 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTN---AKHAVEDKCKLLSQENA  216 (270)
Q Consensus       165 eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~---e~e~l~~~~e~~~~r~~  216 (270)
                      .+...+.+++.+...+..+...|...+..|..|+.   .+++|..+++.++..+.
T Consensus        14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~   68 (155)
T PF06810_consen   14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK   68 (155)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            33444555555566666666666666666666666   25556666666665554

The function of this family is unknown.; GO: 0005198 structural molecule activity

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=81.96  E-value=22  Score=27.73  Aligned_cols=27  Identities=19%  Similarity=0.329  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhhHHH
Q psy5601         167 VELRKELTSVRSKNETLDSELKCRDEE  193 (270)
Q Consensus       167 pel~~e~~~L~~~l~~lE~~l~~~d~e  193 (270)
                      |.|..+++.+...+..++..+..+...
T Consensus        66 ~~Le~~~e~le~~i~~l~~~~~~l~~~   92 (105)
T cd00632          66 TELKERLETIELRIKRLERQEEDLQEK   92 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=81.83  E-value=22  Score=27.45  Aligned_cols=6  Identities=33%  Similarity=0.435  Sum_probs=2.1

Q ss_pred             HhhhhH
Q psy5601         186 ELKCRD  191 (270)
Q Consensus       186 ~l~~~d  191 (270)
                      +|+..+
T Consensus        54 eLD~~~   59 (89)
T PF13747_consen   54 ELDQAE   59 (89)
T ss_pred             HHHhHH
Confidence            333333

>smart00461 WH1 WASP homology region 1

Probab=81.82  E-value=0.16  Score=40.27  Aligned_cols=22  Identities=23%  Similarity=0.576  Sum_probs=20.2

Q ss_pred             CcccccccccccchhhhhHHHHHH
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSLV   24 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~~   24 (270)
                      |.|++++..|.+|+|  .+.||||
T Consensus        66 ~~y~~~~~~Fh~f~~--~~~~~GL   87 (106)
T smart00461       66 FKYNQATPTFHQWAD--DKCVYGL   87 (106)
T ss_pred             CEEeecCCceEEEEe--CCeEEEe
Confidence            678999999999998  7889999

Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.

>KOG0962|consensus

Probab=81.81  E-value=96  Score=34.89  Aligned_cols=68  Identities=24%  Similarity=0.258  Sum_probs=32.1

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601         133 SKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA  200 (270)
Q Consensus       133 ~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e  200 (270)
                      -++.+-...+....++.+.+..++......-.+|.-...+++.+-..+..++++..+....+..++..
T Consensus       223 l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~  290 (1294)
T KOG0962|consen  223 LNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREK  290 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444444444444444444444444444333333334444444455555555555555555555544

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=81.55  E-value=74  Score=33.44  Aligned_cols=86  Identities=22%  Similarity=0.269  Sum_probs=50.3

Q ss_pred             cchhHHHHhhhhhcchhhhhhhHHhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhh
Q psy5601          59 AKKWEIELANLKSNNLRLTSALQESTANVE--------EWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTS  130 (270)
Q Consensus        59 ~~~~E~el~~Lk~~n~rl~~al~Es~a~v~--------~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~  130 (270)
                      ..+-..||+.|+++.+||-+-|+-|+..|.        +-+.++..|...+..|...+....             +...+
T Consensus       473 ~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~q-------------e~la~  539 (739)
T PF07111_consen  473 VTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQ-------------ESLAE  539 (739)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH
Confidence            456778899999999998888876655552        223444444444444444443332             33444


Q ss_pred             hhhchHHHHHHHHHHHHHHHHHHHhhH
Q psy5601         131 VRSKNETLDSELKCRDEEVKKLTNAKH  157 (270)
Q Consensus       131 l~~~~eele~eL~~~e~Eie~L~~qi~  157 (270)
                      +...+.....-+.....+...|+..+.
T Consensus       540 l~~QL~~Ar~~lqes~eea~~lR~EL~  566 (739)
T PF07111_consen  540 LEEQLEAARKSLQESTEEAAELRRELT  566 (739)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            444555555555556666666665553

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3

Probab=81.49  E-value=22  Score=31.54  Aligned_cols=93  Identities=17%  Similarity=0.321  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhch----HHHHHHHHHHHHHHHHHHHhhHHhhhh
Q psy5601          87 VEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKN----ETLDSELKCRDEEVKKLTNAKHAVEDK  162 (270)
Q Consensus        87 v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~----eele~eL~~~e~Eie~L~~qi~~LE~~  162 (270)
                      +..++.+|+.|.....+...+......  ...              ..+    .+++.-|.=++.++..+..   .--..
T Consensus        98 evrLkrELa~Le~~l~~~~~~~~~~~~--~~~--------------~~~~lvk~e~EqLL~YK~~ql~~~~~---~~~~~  158 (195)
T PF12761_consen   98 EVRLKRELAELEEKLSKVEQAAESRRS--DTD--------------SKPALVKREFEQLLDYKERQLRELEE---GRSKS  158 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccc--CCc--------------chHHHHHHHHHHHHHHHHHHHHhhhc---cCCCC
Confidence            466777777777766666666544310  000              111    1334444444444433332   00011


Q ss_pred             hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Q psy5601         163 CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLT  198 (270)
Q Consensus       163 ~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~  198 (270)
                      +.-+..+++-++.|++-+.-||.=|.++..+|..|+
T Consensus       159 ~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~  194 (195)
T PF12761_consen  159 GKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR  194 (195)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333444666666666666666666777766666653

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=81.01  E-value=34  Score=29.26  Aligned_cols=78  Identities=13%  Similarity=0.187  Sum_probs=57.0

Q ss_pred             HHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5601         184 DSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIH  261 (270)
Q Consensus       184 E~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~  261 (270)
                      |..++..=+..++++..+--+.++-..+-.+..+|+.++..+...++.+..-...+..-+.=|...+......|.+++
T Consensus        76 E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~  153 (159)
T PF05384_consen   76 EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQ  153 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            445555556666677777667777777888888888888888888888888888777777777777777666666653

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=80.93  E-value=5.9  Score=28.07  Aligned_cols=26  Identities=12%  Similarity=0.349  Sum_probs=9.8

Q ss_pred             HHHHhhhhHHHHHHHHHhhHHHHHHH
Q psy5601         183 LDSELKCRDEEVKKLTNAKHAVEDKC  208 (270)
Q Consensus       183 lE~~l~~~d~el~~L~~e~e~l~~~~  208 (270)
                      +|.++..++..|+.++.+.+++...+
T Consensus         5 lEn~~~~~~~~i~tvk~en~~i~~~v   30 (55)
T PF05377_consen    5 LENELPRIESSINTVKKENEEISESV   30 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=80.89  E-value=11  Score=35.89  Aligned_cols=76  Identities=16%  Similarity=0.202  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         169 LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIID  244 (270)
Q Consensus       169 l~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~  244 (270)
                      +...+..+...+...+..+..+...+..+...+..+....+....++..++..+...+.+|..+..=...+.+|..
T Consensus       219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~  294 (344)
T PF12777_consen  219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKE  294 (344)
T ss_dssp             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhh
Confidence            4555566666666666666666666666666666666666666666666666666666666555554444444443

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=80.63  E-value=52  Score=31.07  Aligned_cols=54  Identities=26%  Similarity=0.272  Sum_probs=23.9

Q ss_pred             HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         197 LTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL  250 (270)
Q Consensus       197 L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l  250 (270)
                      |.-+++-|.++++.++.-+..+...+...-++++-.+.....+..++..|++++
T Consensus       110 l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L  163 (302)
T PF09738_consen  110 LMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL  163 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444444444444433

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=80.51  E-value=11  Score=32.72  Aligned_cols=36  Identities=19%  Similarity=0.375  Sum_probs=27.9

Q ss_pred             HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601         126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED  161 (270)
Q Consensus       126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~  161 (270)
                      ++......+++.++.+|...+.+++.|++|++++..
T Consensus       154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~  189 (192)
T PF05529_consen  154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK  189 (192)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455666778888888888888888888888866654

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=80.27  E-value=12  Score=35.58  Aligned_cols=90  Identities=16%  Similarity=0.241  Sum_probs=52.1

Q ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5601         176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVA  255 (270)
Q Consensus       176 L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~  255 (270)
                      ++..+..++..+......+...+..+..+..++..+.............++.++.....+......=+..|.+...+=..
T Consensus       219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~  298 (344)
T PF12777_consen  219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSE  298 (344)
T ss_dssp             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHH
Confidence            45566666666666666666666666666666666666666666666666666666666666555555555555554444


Q ss_pred             HHHHHHHHHH
Q psy5601         256 ELATIHREIN  265 (270)
Q Consensus       256 eL~el~~~l~  265 (270)
                      .+..+...+.
T Consensus       299 ~~~~l~~~~~  308 (344)
T PF12777_consen  299 QIEELEEQLK  308 (344)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            4444444433

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>KOG1760|consensus

Probab=80.18  E-value=14  Score=30.55  Aligned_cols=32  Identities=22%  Similarity=0.445  Sum_probs=22.9

Q ss_pred             hhhhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601         130 SVRSKNETLDSELKCRDEEVKKLTNAKHAVED  161 (270)
Q Consensus       130 ~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~  161 (270)
                      .+.+++..++++|.....+++.|..-..+++-
T Consensus        27 rl~~R~~~lk~dik~~k~~~enledA~~EieL   58 (131)
T KOG1760|consen   27 RLNSRKDDLKADIKEAKTEIENLEDASNEIEL   58 (131)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence            34467778888888888888877776665553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	270
1i2h_A	168	Crystal Structure Analysis Of Psd-Zip45(Homer1cVESL		1e-05
2p8v_A	117	Crystal Structure Of Human Homer3 Evh1 Domain Lengt		2e-05
1ddv_A	111	Crystal Structure Of The Homer Evh1 Domain With Bou		2e-05
1i7a_A	111	Evh1 Domain From Murine Homer 2bVESL 2 Length = 111		2e-05
1ddw_A	120	Homer Evh1 Domain Unliganded Length = 120		1e-04

>pdb|1I2H|A Chain A, Crystal Structure Analysis Of Psd-Zip45(Homer1cVESL-1l) Conserved Homer 1 Domain Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1  MTFTKTSQKFGQWSDIRANTV 21
          MTFTKTSQKFGQW+D RANTV
Sbjct: 70 MTFTKTSQKFGQWADSRANTV 90

>pdb|2P8V|A Chain A, Crystal Structure Of Human Homer3 Evh1 Domain Length = 117

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1  MTFTKTSQKFGQWSDIRANTV 21
          MTFTKTSQKFGQW+D RANTV
Sbjct: 67 MTFTKTSQKFGQWADSRANTV 87

>pdb|1DDV|A Chain A, Crystal Structure Of The Homer Evh1 Domain With Bound Mglur Peptide Length = 111

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1  MTFTKTSQKFGQWSDIRANTV 21
          MTFTKTSQKFGQW+D RANTV
Sbjct: 65 MTFTKTSQKFGQWADSRANTV 85

>pdb|1I7A|A Chain A, Evh1 Domain From Murine Homer 2bVESL 2 Length = 111

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/21 (90%), Positives = 20/21 (95%)
Query: 1  MTFTKTSQKFGQWSDIRANTV 21
          MTFTKTSQKFGQW+D RANTV
Sbjct: 65 MTFTKTSQKFGQWADSRANTV 85

>pdb|1DDW|A Chain A, Homer Evh1 Domain Unliganded Length = 120

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/20 (90%), Positives = 19/20 (95%)
Query: 2  TFTKTSQKFGQWSDIRANTV 21
          TFTKTSQKFGQW+D RANTV
Sbjct: 66 TFTKTSQKFGQWADSRANTV 85

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-07
2xs1_A	704	Programmed cell death 6-interacting protein; prote	4e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.0 bits (148), Expect = 8e-11
 Identities = 40/228 (17%), Positives = 100/228 (43%), Gaps = 18/228 (7%)

Query: 57   ANAKKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKG 116
            A  KK + ++ +L+       +A Q+          +++  +++   ++ +  +L   + 
Sbjct: 948  AEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK 1007

Query: 117  VSEAAV-----------ELRKELTSVRSKNETLDSELKCRDEEVKK----LTNAKHAVED 161
            + E  V           E  K LT +++K+E++ SEL+ R ++ +K    L   K  +E 
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067

Query: 162  KCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAA 221
            +     +L +++  ++++   L ++L  ++EE++           +     ++  EL++ 
Sbjct: 1068 ESS---DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124

Query: 222  ISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQ 269
            IS +Q  L++  A+++   +    L+ +L     EL        T  +
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQE 1172

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 55.2 bits (133), Expect = 7e-09
 Identities = 25/196 (12%), Positives = 67/196 (34%), Gaps = 5/196 (2%)

Query: 60   KKWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSE 119
            KK E ++  ++  N +LT   +     V +    L   +E+ + L     + E+     E
Sbjct: 986  KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045

Query: 120  AAVE-LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVE----LRKELT 174
              ++   K    +      L+ E     E++ +L      ++ +     E        L 
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLE 1105

Query: 175  SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLA 234
               S+      +++  +  +  L     + +       ++  +L   +  ++ +L+  L 
Sbjct: 1106 DETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165

Query: 235  SQDAQRRIIDTLNHQL 250
            +   Q+ +  +     
Sbjct: 1166 TTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 43/210 (20%), Positives = 96/210 (45%), Gaps = 8/210 (3%)

Query: 61   KWEIELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEA 120
            + E E+        R     Q++ A ++E +++     EE   L+ K   L+A   +   
Sbjct: 854  RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK---LQAETELYAE 910

Query: 121  AVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAV-ELRKELTSVRSK 179
            A E+R  L + + + E +  E++ R EE ++ +    A + K +  + +L ++L    + 
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 180  NETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQ 239
             + L  E    D ++KK+ +    +ED+   L++E   L+  +    + L T LA ++ +
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV----SDLTTNLAEEEEK 1026

Query: 240  RRIIDTLNHQLAGRVAELATIHREINTALQ 269
             + +  L ++    ++EL    ++   + Q
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 29/202 (14%), Positives = 72/202 (35%), Gaps = 12/202 (5%)

Query: 19   NTVSLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNNLRLTS 78
            + + +++ Q + L   +      +  L   LA     + N  K + +  ++ S    L  
Sbjct: 990  DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE---LEV 1046

Query: 79   ALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETL 138
             L++   + +E +K  +  + E+  L  +  EL+A         EL+ +L     + +  
Sbjct: 1047 RLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA------ELKAQLAKKEEELQAA 1100

Query: 139  DSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLT 198
             + L+    +          +E       +L+++L S ++     + + +   EE++ L 
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHIS---DLQEDLESEKAARNKAEKQKRDLSEELEALK 1157

Query: 199  NAKHAVEDKCKLLSQENAELQA 220
                   D      +       
Sbjct: 1158 TELEDTLDTTATQQELRGSDYK 1179

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 31/220 (14%), Positives = 75/220 (34%), Gaps = 19/220 (8%)

Query: 65   ELANLKSNNLRLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVEL 124
                ++   + L + L+      +      +      QK    ++         +A V L
Sbjct: 834  RYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893

Query: 125  RKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETL- 183
            +     + +K E    +LK     V++       +E+K     +L++++     + ++L 
Sbjct: 894  QCCYRRMMAKRELK--KLKIEARSVERYKKLHIGLENKIM---QLQRKIDEQNKEYKSLL 948

Query: 184  -------------DSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLD 230
                           +L+   E ++          ++   L +E A+L+  +   Q +  
Sbjct: 949  EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008

Query: 231  TLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQT 270
            T+    D  +   + L  +L  +   L T   E+N  +  
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 40.3 bits (93), Expect = 4e-04
 Identities = 35/247 (14%), Positives = 85/247 (34%), Gaps = 7/247 (2%)

Query: 27  QLDTLLASQDAQRRIIDTLNHQLAGRVADSANAKKWEIELANLKSNNLRLTSALQESTAN 86
             + +LAS +    I D     +   +   + +   +  +  +      L   LQ +   
Sbjct: 397 LANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREI 456

Query: 87  VEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRD 146
           ++E  + L   +  +  L+ K+ E       +E    LR E T+ R     LD  ++   
Sbjct: 457 LDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFR---TVLDKAVQADG 513

Query: 147 EEVKKLTNAKHAVEDKCKAAVELRKELTSVR----SKNETLDSELKCRDEEVKKLTNAKH 202
           +  +   + +  +   CK   EL   + S       +   + + LK     + ++   + 
Sbjct: 514 QVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKERE 573

Query: 203 AVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHR 262
            +E+  K ++ +              ++    S     R+   L  ++   + +   + +
Sbjct: 574 GLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLK 633

Query: 263 EINTALQ 269
            I  + Q
Sbjct: 634 NIQVSHQ 640

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 22/151 (14%), Positives = 59/151 (39%), Gaps = 6/151 (3%)

Query: 80   LQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLD 139
            L+++ A V++ +  L     E      +  +        + A E++++            
Sbjct: 1929 LRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQV----- 1983

Query: 140  SELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTN 199
             +L  R++E+       +A  +K +    LR+E+  + +    L  +       +  L  
Sbjct: 1984 -QLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEK 2042

Query: 200  AKHAVEDKCKLLSQENAELQAAISLVQAQLD 230
            +    +++   L +E  +++   S V+ ++D
Sbjct: 2043 SIATYKEEYATLIRETEQIKTESSKVKNKVD 2073

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 38/260 (14%), Positives = 91/260 (35%), Gaps = 73/260 (28%)

Query: 23  LVQAQLDTLLASQDAQ---RRIIDTL---NHQLAGRVADSANAK--KWEIELANLKSNNL 74
           L + ++D ++ S+DA     R+  TL     ++  +  +       K+   L +      
Sbjct: 46  LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF---LMS------ 96

Query: 75  RLTSALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVS--EAAVELRKELTSVR 132
            + +  ++ +     + +Q      +NQ    KY        VS  +  ++LR+ L  +R
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-AKY-------NVSRLQPYLKLRQALLELR 148

Query: 133 S-KNETLD-------SEL---KCRDEEVKKLTNAK-HAVEDKCKAAVELRKELTSVRSKN 180
             KN  +D       + +    C   +V+   + K   +               ++++ N
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---------------NLKNCN 193

Query: 181 ETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQR 240
                     +  ++ L    + ++      S  ++ ++  I  +QA+L  LL S+  + 
Sbjct: 194 SP--------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 241 -----------RIIDTLNHQ 249
                      +  +  N  
Sbjct: 246 CLLVLLNVQNAKAWNAFNLS 265

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	270
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	99.35
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	99.27
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.88
1i2h_A	168	PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology	98.57
1ddw_A	120	GLGF-domain protein homer; pleckstrin homology dom	98.41
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	98.34
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.3
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.25
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.85
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	97.6
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.22
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	97.05
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.95
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.87
3syx_A	130	Sprouty-related, EVH1 domain-containing protein 1;	96.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.83
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.83
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	96.81
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.71
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.7
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	96.7
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	96.65
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.21
1evh_A	112	WH1 domain, protein (MENA EVH1 domain); molecular	96.16
3bas_A	89	Myosin heavy chain, striated muscle/general contro	95.94
1egx_A	115	VAsp, vasodilator-stimulated phosphoprotein; EVH1,	95.76
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	95.61
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.51
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.48
1xod_A	118	Spred1; sprouty, EVH1, peptide-binding, signaling	95.45
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	95.34
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.26
2jp2_A	126	Spred-2, sprouty-related, EVH1 domain-containing p	95.05
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	95.02
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.45
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.39
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	94.34
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	94.31
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	93.91
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	93.81
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	93.66
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	93.63
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	93.54
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	93.43
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	93.35
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	93.17
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	92.71
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	92.18
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	92.18
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	92.01
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	91.45
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	91.35
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	91.35
3bas_A	89	Myosin heavy chain, striated muscle/general contro	91.13
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	90.82
1qc6_A	130	EVH1 domain from ENA/VAsp-like protein; AN incompl	90.51
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	90.08
2oto_A	155	M protein; helical coiled coil, fibrinogen-binding	89.13
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	88.22
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	88.11
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	88.09
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	88.07
2xnx_M	146	M protein, M1-BC1; cell adhesion, virulence factor	88.06
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	87.96
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	87.8
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	87.45
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	86.81
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	86.31
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	86.22
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	86.17
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	85.64
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	85.57
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	85.15
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	84.83
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	84.03
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	83.56
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	83.47
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	83.25
2oto_A	155	M protein; helical coiled coil, fibrinogen-binding	83.09
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	82.93
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	81.97
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	81.25
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	81.02
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	80.91
2pms_C	125	Pneumococcal surface protein A (PSPA); lactoferrin	80.28
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	80.24

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=99.35  E-value=3.7e-12  Score=95.07  Aligned_cols=74  Identities=16%  Similarity=0.263  Sum_probs=65.7

Q ss_pred             HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy5601         196 KLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQ  269 (270)
Q Consensus       196 ~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~~~  269 (270)
                      +|+.+++++..+++.++.+|+.++.+|+.++.+|++.+..++.++.|++.+.+.||+||++|+++|+||++|+.
T Consensus         3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~   76 (79)
T 3cvf_A            3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAE   76 (79)
T ss_dssp             -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999974

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=99.27  E-value=4e-11  Score=87.96  Aligned_cols=68  Identities=25%  Similarity=0.362  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy5601         202 HAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTALQ  269 (270)
Q Consensus       202 e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~~~  269 (270)
                      .++..+++.++.+|++++.+|..++.+|++++..++.++.+++.+.+.||+||++|+++|++|++|+.
T Consensus         3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL~~   70 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKLLE   70 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence            46789999999999999999999999999999999999999999999999999999999999999874

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.88  E-value=6e-06  Score=70.84  Aligned_cols=21  Identities=0%  Similarity=0.007  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHH
Q psy5601         240 RRIIDTLNHQLAGRVAELATI  260 (270)
Q Consensus       240 ~~El~~l~e~ld~ki~eL~el  260 (270)
                      ...+..+...+......+..+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~  256 (284)
T 1c1g_A          236 ETRAEFAERSVTKLEKSIDDL  256 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4

Probab=98.57  E-value=2.4e-09  Score=90.71  Aligned_cols=64  Identities=42%  Similarity=0.497  Sum_probs=40.7

Q ss_pred             CcccccccccccchhhhhHHHHHH----HHHhh------------HHHhhHHHHHhhhhchhhhhh-------c-ccccc
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLD------------TLLASQDAQRRIIDTLNHQLA-------G-RVADS   56 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~------------~~~~~~~~~~~~~~~en~~l~-------~-~~~ss   56 (270)
                      |+|+||+++||||.|+|||+||||    +..+.            .++|++++|+++++..+.-+.       . ....+
T Consensus        70 l~Y~kasp~FHqW~d~~~~~v~GLnF~Se~eA~~F~~~~~~ale~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (168)
T 1i2h_A           70 MTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEKMELTSTPSQESAGGDLQSPLTPES  149 (168)
T ss_dssp             CCEEEEETTEEEEEETTTTEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCC-----CCCCSCSCCC-
T ss_pred             cEEeeCCcccceeecCCCcEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccCccccCCCCCccc
Confidence            899999999999999999999999    44444            789999999999986632211       1 23347


Q ss_pred             cccchhHH
Q psy5601          57 ANAKKWEI   64 (270)
Q Consensus        57 ~n~~~~E~   64 (270)
                      +||.+.|.
T Consensus       150 ~~~~~~~~  157 (168)
T 1i2h_A          150 INGTDDER  157 (168)
T ss_dssp             --------
T ss_pred             ccCCCCcc
Confidence            88887775

>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*

Probab=98.41  E-value=1e-08  Score=82.44  Aligned_cols=39  Identities=59%  Similarity=0.810  Sum_probs=27.2

Q ss_pred             CcccccccccccchhhhhHHHHHH----HHHhh------------HHHhhHHHHH
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLD------------TLLASQDAQR   39 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~------------~~~~~~~~~~   39 (270)
                      |+|++|+++||||.|+|||+||||    +..+.            .++|++|+|+
T Consensus        65 l~y~~a~p~FhqW~d~~~~~~~GLnF~s~~eA~~F~~~~~~~~~~l~~~~~~~~~  119 (120)
T 1ddw_A           65 MTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQE  119 (120)
T ss_dssp             CCCEECSSSEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHC--------
T ss_pred             cEEeeCCccccEEEcCCCcEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            899999999999999999999999    55544            5566666665

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=98.34  E-value=0.00024  Score=61.08  Aligned_cols=31  Identities=19%  Similarity=0.394  Sum_probs=23.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601          83 STANVEEWKKQLQAYKEENQKLKTKYIELEA  113 (270)
Q Consensus        83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele~  113 (270)
                      ....|.-|+.....|+.....|+..+.+--.
T Consensus         8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqe   38 (189)
T 2v71_A            8 LKEETAYWKELSMKYKQSFQEARDELVEFQE   38 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556888888888888888887777766544

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.30  E-value=0.00015  Score=64.69  Aligned_cols=124  Identities=11%  Similarity=0.178  Sum_probs=57.9

Q ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601          80 LQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAV  159 (270)
Q Consensus        80 l~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~L  159 (270)
                      ||.....+..+...+..+..+...|...+..+.             .....+...+..++.++..++.+|..++.++...
T Consensus        13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~-------------~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~   79 (256)
T 3na7_A           13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKN-------------KAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI   79 (256)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555555555555555544444444444444             3334444455555555555555555555555555


Q ss_pred             hhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q psy5601         160 EDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE  217 (270)
Q Consensus       160 E~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~  217 (270)
                      +.+-..+. -..++..|..+|+.++.++...+.+|..++..++.+...+..+......
T Consensus        80 ~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~  136 (256)
T 3na7_A           80 QKKMSEIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLE  136 (256)
T ss_dssp             HHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44411111 1223344444444444444444444444444444444444444443333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.25  E-value=0.0003  Score=62.70  Aligned_cols=64  Identities=14%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5601         192 EEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVA  255 (270)
Q Consensus       192 ~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~  255 (270)
                      .++..|..+++.+..++..++.++.++..++..++..+..+......+..++..+...++..+.
T Consensus        90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~  153 (256)
T 3na7_A           90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVK  153 (256)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555555555555555555444444444444443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.85  E-value=0.0032  Score=54.03  Aligned_cols=24  Identities=13%  Similarity=0.156  Sum_probs=10.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHH
Q psy5601         207 KCKLLSQENAELQAAISLVQAQLD  230 (270)
Q Consensus       207 ~~e~~~~r~~~lE~~i~~LE~~Le  230 (270)
                      -+++++.+...+=.++.-|+.+|.
T Consensus       131 SleD~e~kln~aiEr~alLE~El~  154 (189)
T 2v71_A          131 SLEDFEQRLNQAIERNAFLESELD  154 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=97.60  E-value=0.0025  Score=67.54  Aligned_cols=93  Identities=23%  Similarity=0.249  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHH
Q psy5601          96 AYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTS  175 (270)
Q Consensus        96 ~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~  175 (270)
                      .++..+..|..+|.++..      ++.+.+.++..+...+..++   ..+..|++.|+.++++++....+...+..++..
T Consensus       918 ~l~~~~~~LE~kl~eLq~------rL~~~e~~n~~L~~~~~~~~---~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~  988 (1080)
T 2dfs_A          918 RYKKLHIGLENKIMQLQR------KIDEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRMSEEEAKNATNRVLS  988 (1080)
T ss_dssp             ---------------------------------------CHHHH---HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445556666665554      44444455555555544443   234566666666666666543333344444444


Q ss_pred             HHHhhHHHHHHhhhhHHHHHHH
Q psy5601         176 VRSKNETLDSELKCRDEEVKKL  197 (270)
Q Consensus       176 L~~~l~~lE~~l~~~d~el~~L  197 (270)
                      |..+++.++..+.....+...+
T Consensus       989 L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A          989 LQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444443333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.22  E-value=0.062  Score=62.51  Aligned_cols=155  Identities=15%  Similarity=0.161  Sum_probs=81.3

Q ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601          80 LQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAV  159 (270)
Q Consensus        80 l~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~L  159 (270)
                      |.++...|...+.+|...+-..+.-.....++=.      .+..=..+....+..+++.++.+.....++...+..++  
T Consensus      1929 L~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~------~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e-- 2000 (3245)
T 3vkg_A         1929 LRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLK------QMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAY-- 2000 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            4677888888888888777665554443332211      11111112233344566677777777777766666552  


Q ss_pred             hhh-hhhhHH--HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         160 EDK-CKAAVE--LRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQ  236 (270)
Q Consensus       160 E~~-~~eipe--l~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~  236 (270)
                       .. ..-.|.  ++.++..++.++......+..++..|.++...+..+..+.+.+..+++.++..+...+.+|..+..=.
T Consensus      2001 -~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A         2001 -ADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp             -HCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22 222332  45555555555555555555555555555555555555555555555555555555555555444444


Q ss_pred             HHHHHHH
Q psy5601         237 DAQRRII  243 (270)
Q Consensus       237 ~~~~~El  243 (270)
                      ..+.+|-
T Consensus      2080 ~gL~~Ek 2086 (3245)
T 3vkg_A         2080 DNLNSER 2086 (3245)
T ss_dssp             HHHHHHH
T ss_pred             Hhhhhcc
Confidence            4443333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.07  E-value=0.1  Score=43.74  Aligned_cols=84  Identities=17%  Similarity=0.128  Sum_probs=46.1

Q ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5601         176 VRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVA  255 (270)
Q Consensus       176 L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~  255 (270)
                      |...+..|+..-..++.++..|+..++.=...+......+.+++.+|..|..+|+.++.+......+...|.+.+..+-.
T Consensus        53 Lq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK  132 (168)
T 3o0z_A           53 LQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK  132 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444454444443344444555566666677777777777777666666666666666555444


Q ss_pred             HHHH
Q psy5601         256 ELAT  259 (270)
Q Consensus       256 eL~e  259 (270)
                      +...
T Consensus       133 e~a~  136 (168)
T 3o0z_A          133 EKNN  136 (168)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            3333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=97.05  E-value=0.018  Score=60.94  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=2.1

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601         129 TSVRSKNETLDSELKCRDEEVKKLTNAKHAVE  160 (270)
Q Consensus       129 ~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE  160 (270)
                      .+|...+.+|...|...+.+...|..++..++
T Consensus       924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~  955 (1080)
T 2dfs_A          924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE  955 (1080)
T ss_dssp             ---------------------------CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33334444555555554555555554444333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.95  E-value=0.083  Score=42.24  Aligned_cols=59  Identities=12%  Similarity=0.193  Sum_probs=34.2

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5601         201 KHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELAT  259 (270)
Q Consensus       201 ~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~e  259 (270)
                      +.+..+.+..+..+...++..|.+++.++++.......+...-+.+.+..+.+..+|.+
T Consensus        64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led  122 (129)
T 2fxo_A           64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD  122 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666666666666666666666666665555555554444444444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.87  E-value=0.12  Score=41.25  Aligned_cols=49  Identities=27%  Similarity=0.357  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHH
Q psy5601          88 EEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSEL  142 (270)
Q Consensus        88 ~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL  142 (270)
                      ..+..++..+.++...|...+...+.      ...+|+..+..+...+..|..+|
T Consensus         9 ~~~e~E~~~~~eel~~lke~l~k~e~------~r~ele~~~~~l~~Ek~~L~~qL   57 (129)
T 2fxo_A            9 AEREKEMASMKEEFTRLKEALEKSEA------RRKELEEKMVSLLQEKNDLQLQV   57 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566667777777777665554      34444444444444444444333

>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}

Probab=96.87  E-value=5.6e-05  Score=61.34  Aligned_cols=28  Identities=14%  Similarity=0.249  Sum_probs=23.9

Q ss_pred             CcccccccccccchhhhhHHHHHH----HHHhhH
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLDT   30 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~~   30 (270)
                      |+|+|++++|+||.|+|  +||||    +....+
T Consensus        79 l~Ynkatp~FHqWrd~~--~~yGL~F~S~~dA~~  110 (130)
T 3syx_A           79 LIYNKVTPTFHHWKIDD--KKFGLTFQSPADARA  110 (130)
T ss_dssp             CEEEEEETTEEEEEETT--EEEEEEESSHHHHHH
T ss_pred             ceEEecccccccccccC--eEeecccCCHHHHHH
Confidence            78999999999999998  99999    555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.83  E-value=0.011  Score=57.60  Aligned_cols=81  Identities=15%  Similarity=0.144  Sum_probs=46.4

Q ss_pred             HHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5601         174 TSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGR  253 (270)
Q Consensus       174 ~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~k  253 (270)
                      +.+.+.+..+..+...+..++..++.+++......+.++.++..++.+++..+..+.+++++......+++.+.+.+++-
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~  584 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN  584 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            33444444444444444455555555555555566666666666666666666666666666666666666666665554


Q ss_pred             H
Q psy5601         254 V  254 (270)
Q Consensus       254 i  254 (270)
                      -
T Consensus       585 ~  585 (597)
T 3oja_B          585 P  585 (597)
T ss_dssp             -
T ss_pred             C
Confidence            3

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.83  E-value=0.16  Score=42.09  Aligned_cols=28  Identities=25%  Similarity=0.319  Sum_probs=12.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601         134 KNETLDSELKCRDEEVKKLTNAKHAVED  161 (270)
Q Consensus       134 ~~eele~eL~~~e~Eie~L~~qi~~LE~  161 (270)
                      +++.-++.+..++.++..+-..+..|+.
T Consensus        36 Rae~aE~k~~eLEeeL~~v~~nlKsLE~   63 (155)
T 2efr_A           36 RAELSEGKSAELEEELKTVTNNLKSLEA   63 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence            3333444444444444444444444444

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.81  E-value=0.17  Score=41.92  Aligned_cols=137  Identities=19%  Similarity=0.170  Sum_probs=65.0

Q ss_pred             hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601          79 ALQESTANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHA  158 (270)
Q Consensus        79 al~Es~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~  158 (270)
                      -|-.+-.....++-.|...+.++.....+|..++.                 ++..+..+..++...+.++.+|...+.+
T Consensus         7 KLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~-----------------~r~~~~~l~~~~~~~~~e~~~L~~~l~~   69 (154)
T 2ocy_A            7 QLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQ-----------------LKEDYNTLKRELSDRDDEVKRLREDIAK   69 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH-----------------HHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            33444444555666666666666666666655542                 1123444444555555566555554421


Q ss_pred             hhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh-hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         159 VEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA-KHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQD  237 (270)
Q Consensus       159 LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e-~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~  237 (270)
                      -.                 ..-..+|.....++.|+.+|... -++...=+-.+......++.++..|+.+|.+....++
T Consensus        70 E~-----------------~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~  132 (154)
T 2ocy_A           70 EN-----------------ELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD  132 (154)
T ss_dssp             HH-----------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11                 11122233333333444444333 1111111222222233366666666666666666666


Q ss_pred             HHHHHHHHHHHH
Q psy5601         238 AQRRIIDTLNHQ  249 (270)
Q Consensus       238 ~~~~El~~l~e~  249 (270)
                      .+...|..|+..
T Consensus       133 ~lq~ql~~LK~v  144 (154)
T 2ocy_A          133 TLTLQLKNLKKV  144 (154)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            666666665543

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.71  E-value=0.2  Score=41.52  Aligned_cols=112  Identities=14%  Similarity=0.190  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q psy5601         138 LDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAE  217 (270)
Q Consensus       138 le~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~  217 (270)
                      ++.+|...++-.+....++..|+.          ++..+...|..||..-......-.....+|..|..++..++.|-..
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEe----------eL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~   95 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEE----------ELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEF   95 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555444444444443          2333333333333322222222222333344444555555555444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5601         218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELAT  259 (270)
Q Consensus       218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~e  259 (270)
                      ++..|.-|+..+..+......-+.....+.+.+|.-+.+|+.
T Consensus        96 AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~  137 (155)
T 2efr_A           96 AERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE  137 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444455555555444444444444444455555544444443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.70  E-value=0.22  Score=41.79  Aligned_cols=24  Identities=17%  Similarity=0.243  Sum_probs=14.2

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHhh
Q psy5601         133 SKNETLDSELKCRDEEVKKLTNAK  156 (270)
Q Consensus       133 ~~~eele~eL~~~e~Eie~L~~qi  156 (270)
                      ..+..|......++.++..|..++
T Consensus        55 ~~~~~L~~~k~~Leke~~~LQa~L   78 (168)
T 3o0z_A           55 ERNRILENSKSQTDKDYYQLQAIL   78 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555556666666666655

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=96.70  E-value=0.07  Score=41.06  Aligned_cols=22  Identities=0%  Similarity=0.098  Sum_probs=9.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhh
Q psy5601         135 NETLDSELKCRDEEVKKLTNAK  156 (270)
Q Consensus       135 ~eele~eL~~~e~Eie~L~~qi  156 (270)
                      |+.++..+..+..+.++...++
T Consensus         4 MdaIKkKm~~lk~e~e~a~dra   25 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALDRA   25 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444333333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=96.65  E-value=0.064  Score=41.15  Aligned_cols=27  Identities=7%  Similarity=0.149  Sum_probs=13.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601         134 KNETLDSELKCRDEEVKKLTNAKHAVE  160 (270)
Q Consensus       134 ~~eele~eL~~~e~Eie~L~~qi~~LE  160 (270)
                      .|+.++..+..+..+.++...++..++
T Consensus         3 ~md~iKkKm~~lk~e~e~a~d~ae~~e   29 (101)
T 3u59_A            3 SMEAIKKKMQMLKLDKENAIDRAEQAE   29 (101)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555555555555555444443333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.21  E-value=0.07  Score=51.80  Aligned_cols=63  Identities=11%  Similarity=0.096  Sum_probs=27.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy5601         205 EDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREINTA  267 (270)
Q Consensus       205 ~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~~~  267 (270)
                      .++.+....++...+..+......++.++.+...++..+...++.+.....+++.++.+|..+
T Consensus       515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          515 KERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444444444444444444444444444444444444444444443

>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A

Probab=96.16  E-value=0.00044  Score=54.58  Aligned_cols=28  Identities=25%  Similarity=0.573  Sum_probs=24.5

Q ss_pred             CcccccccccccchhhhhHHHHHH----HHHhhH
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLDT   30 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~~   30 (270)
                      |+|++++.+|+||+|+|  +||||    +....+
T Consensus        68 ~~y~~~~p~Fh~w~~~~--~~~GLnF~se~eA~~   99 (112)
T 1evh_A           68 LKYNQATQTFHQWRDAR--QVYGLNFGSKEDANV   99 (112)
T ss_dssp             CCCBCCSSSEEEEECSS--CEEEEEESSHHHHHH
T ss_pred             ceEEecCccceeEecCC--EEEEEecCCHHHHHH
Confidence            78999999999999998  89999    666544

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=95.94  E-value=0.083  Score=39.70  Aligned_cols=52  Identities=17%  Similarity=0.206  Sum_probs=37.1

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy5601         179 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLD  230 (270)
Q Consensus       179 ~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Le  230 (270)
                      ...+++.....+..+.++|..++.++.+.+..+...+.+++..|.+++.+|+
T Consensus        36 ~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~   87 (89)
T 3bas_A           36 IKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4445555566666777777777777777888888888888888888777665

>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4

Probab=95.76  E-value=0.00088  Score=53.10  Aligned_cols=28  Identities=21%  Similarity=0.487  Sum_probs=24.2

Q ss_pred             CcccccccccccchhhhhHHHHHH----HHHhhH
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLDT   30 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~~   30 (270)
                      |+|++++.+|+||.|+|  +||||    +....+
T Consensus        70 l~y~~~~p~FH~w~~~~--~~~GLnF~se~eA~~  101 (115)
T 1egx_A           70 VKYNQATPNFHQWRDAR--QVWGLNFGSKEDAAQ  101 (115)
T ss_dssp             CCCCCSSTTEEEEESSS--CEEEEEESSHHHHHH
T ss_pred             ceEEecCccceEEecCC--EEEEEecCCHHHHHH
Confidence            78999999999999998  89999    665443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=95.61  E-value=0.17  Score=40.28  Aligned_cols=30  Identities=10%  Similarity=0.049  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         218 LQAAISLVQAQLDTLLASQDAQRRIIDTLN  247 (270)
Q Consensus       218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~  247 (270)
                      +...|..|+.+|..++......-.+...|.
T Consensus        80 ~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll  109 (129)
T 3tnu_B           80 ARNKLAELEEALQKAKQDMARLLREYQELM  109 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555544444433333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.51  E-value=3.6  Score=48.31  Aligned_cols=91  Identities=14%  Similarity=0.181  Sum_probs=46.3

Q ss_pred             HHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy5601         177 RSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAE  256 (270)
Q Consensus       177 ~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~e  256 (270)
                      +.++..++.++......+...+..+.++.+++..+..+...+-.+...|+.+++..+.+......=+..|-++...=...
T Consensus      2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A         2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence            34444445555555555554444455555555555555555555555555555555555555555555555555554445


Q ss_pred             HHHHHHHHHHh
Q psy5601         257 LATIHREINTA  267 (270)
Q Consensus       257 L~el~~~l~~~  267 (270)
                      +..+...+.+|
T Consensus      2093 ~~~l~~~~~~L 2103 (3245)
T 3vkg_A         2093 SENFNTQMSTV 2103 (3245)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            55555444443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.48  E-value=0.26  Score=36.51  Aligned_cols=71  Identities=17%  Similarity=0.181  Sum_probs=45.7

Q ss_pred             hHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         180 NETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL  250 (270)
Q Consensus       180 l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l  250 (270)
                      ++.||.++...-..|.-|+.++++|..+...+...+.++......|..+.+.++..+......+..|.+..
T Consensus         8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~   78 (81)
T 2jee_A            8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44556666666666666777777777766666666666666666666666666666666666666655544

>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A

Probab=95.45  E-value=0.00089  Score=53.32  Aligned_cols=29  Identities=14%  Similarity=0.288  Sum_probs=24.5

Q ss_pred             CcccccccccccchhhhhHHHHHH----HHHhhHH
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLDTL   31 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~~~   31 (270)
                      |+|++++.+|+||.|+  |+||||    +....++
T Consensus        72 ~~y~~~~p~Fh~w~~~--~~~~GL~F~se~eA~~F  104 (118)
T 1xod_A           72 LVYNKVTPTFHHWRIG--DKKFGLTFQSPADARAF  104 (118)
T ss_dssp             CEEEEEETTEEEEEET--TEEEEEEESSHHHHHHH
T ss_pred             cEEEecCCcceEEEeC--CEEEEEecCCHHHHHHH
Confidence            7899999999999997  899999    6655443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=95.34  E-value=0.14  Score=40.95  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         217 ELQAAISLVQAQLDTLLASQDAQRRIIDTLNH  248 (270)
Q Consensus       217 ~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e  248 (270)
                      .+...|..|+.+|..++......-.+...|.+
T Consensus        81 ~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~  112 (131)
T 3tnu_A           81 QIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD  112 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555666666666666655555444444443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.26  E-value=0.72  Score=35.26  Aligned_cols=61  Identities=15%  Similarity=0.192  Sum_probs=24.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Q psy5601         134 KNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSVRSKNETLDSELKCRDEEVKKL  197 (270)
Q Consensus       134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L  197 (270)
                      .|..|+.+........+.+..++...+..   ......++.+|..+|.-+|..++.....+...
T Consensus        10 Km~~lk~e~e~a~drae~~e~~~k~~e~~---~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea   70 (101)
T 3u1c_A           10 KMQMLKLDKENALDRAEQAEADKKAAEER---SKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS   70 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444333321   11222333444444444444444444333333

>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=95.05  E-value=0.0016  Score=52.42  Aligned_cols=28  Identities=18%  Similarity=0.294  Sum_probs=23.8

Q ss_pred             CcccccccccccchhhhhHHHHHH----HHHhhH
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLDT   30 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~~   30 (270)
                      |+|+|++.+|+||.|++  ++|||    +....+
T Consensus        81 l~Y~~~~p~FH~w~~~~--~~~GLnF~se~eA~~  112 (126)
T 2jp2_A           81 LVYTKANPTFHHWKVDN--RKFGLTFQSPADARA  112 (126)
T ss_dssp             CCEEEEETTEEEEECSS--SEEEEEESSHHHHHH
T ss_pred             ceEEecCCcceEEEcCC--EEEEEecCCHHHHHH
Confidence            78999999999999997  78999    665443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.02  E-value=0.77  Score=35.09  Aligned_cols=57  Identities=23%  Similarity=0.306  Sum_probs=31.9

Q ss_pred             HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5601         172 ELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQ  228 (270)
Q Consensus       172 e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~  228 (270)
                      +++.++..|..|+.++.+.+.++..|...+..-...+..++..+..++..+++|-..
T Consensus         6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas   62 (97)
T 2eqb_B            6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS   62 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666666666666555555555555555555555555544443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.39  E-value=1.2  Score=33.80  Aligned_cols=24  Identities=13%  Similarity=0.112  Sum_probs=10.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhH
Q psy5601         134 KNETLDSELKCRDEEVKKLTNAKH  157 (270)
Q Consensus       134 ~~eele~eL~~~e~Eie~L~~qi~  157 (270)
                      .|..|+.+........+.+..++.
T Consensus        10 Km~~lk~e~e~a~d~ae~~e~~~k   33 (101)
T 3u59_A           10 KMQMLKLDKENAIDRAEQAEADKK   33 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=94.34  E-value=0.7  Score=33.81  Aligned_cols=19  Identities=21%  Similarity=0.253  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy5601         216 AELQAAISLVQAQLDTLLA  234 (270)
Q Consensus       216 ~~lE~~i~~LE~~Lee~~~  234 (270)
                      .++..+|..++.+|+....
T Consensus        44 ~~L~kKiq~lE~eld~~ee   62 (81)
T 1ic2_A           44 VALQKKLKGTEDELDKYSE   62 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=94.31  E-value=0.33  Score=39.34  Aligned_cols=17  Identities=24%  Similarity=0.190  Sum_probs=6.2

Q ss_pred             HHhHHHHHHHHHHHHHH
Q psy5601         210 LLSQENAELQAAISLVQ  226 (270)
Q Consensus       210 ~~~~r~~~lE~~i~~LE  226 (270)
                      .+..++.+++.++..|+
T Consensus       114 ~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A          114 ELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=93.91  E-value=1.8  Score=33.84  Aligned_cols=19  Identities=16%  Similarity=0.260  Sum_probs=9.1

Q ss_pred             HHHhhhhhchHHHHHHHHH
Q psy5601         126 KELTSVRSKNETLDSELKC  144 (270)
Q Consensus       126 ~e~~~l~~~~eele~eL~~  144 (270)
                      ..+..|...++.|+..+..
T Consensus        10 ~~~~~L~~E~e~~k~K~~~   28 (111)
T 2v66_B           10 ADNQRLKYEVEALKEKLEH   28 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555444

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=93.81  E-value=0.44  Score=35.15  Aligned_cols=56  Identities=13%  Similarity=0.111  Sum_probs=28.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5601         204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELAT  259 (270)
Q Consensus       204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~e  259 (270)
                      +...++.+..++++++.++..|+.+|..++.+.++.+.+...++..+...+.-|..
T Consensus         4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~   59 (79)
T 3cvf_A            4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDV   59 (79)
T ss_dssp             ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34455556666666666666666666666666665555555555555544444433

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=93.66  E-value=0.92  Score=33.74  Aligned_cols=52  Identities=10%  Similarity=0.161  Sum_probs=26.6

Q ss_pred             HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         199 NAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQL  250 (270)
Q Consensus       199 ~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~l  250 (270)
                      ..+++...+.+..-....++|..+..|...+.++--..-.++..+..|.+.+
T Consensus        28 ~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl   79 (86)
T 3swk_A           28 EDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI   79 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444445555555555555555555555555555555555544443

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=93.63  E-value=1.6  Score=35.71  Aligned_cols=13  Identities=8%  Similarity=0.281  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHHH
Q psy5601         223 SLVQAQLDTLLAS  235 (270)
Q Consensus       223 ~~LE~~Lee~~~~  235 (270)
                      .-++..|+....+
T Consensus        83 ~~~E~dLeraeeR   95 (147)
T 2b9c_A           83 VIIESDLERAEER   95 (147)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=93.54  E-value=0.84  Score=36.93  Aligned_cols=60  Identities=20%  Similarity=0.270  Sum_probs=32.5

Q ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         175 SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLA  234 (270)
Q Consensus       175 ~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~  234 (270)
                      .++..++.++..+..++.++.+|+.++..+..+++.+...+.++..++..|+.++..++.
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~  131 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET  131 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555556666666665555555555555555555555555555555443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=93.43  E-value=1  Score=35.14  Aligned_cols=47  Identities=13%  Similarity=0.171  Sum_probs=31.7

Q ss_pred             hhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHH
Q psy5601         129 TSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTS  175 (270)
Q Consensus       129 ~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~  175 (270)
                      ..|..++...+..|..+..+|..|+..+..+......||.|+.|++-
T Consensus        27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~I   73 (110)
T 2v4h_A           27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADI   73 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677777777777777777777776666555667777666653

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.35  E-value=2  Score=32.73  Aligned_cols=27  Identities=37%  Similarity=0.538  Sum_probs=14.8

Q ss_pred             hhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601         130 SVRSKNETLDSELKCRDEEVKKLTNAK  156 (270)
Q Consensus       130 ~l~~~~eele~eL~~~e~Eie~L~~qi  156 (270)
                      .++..+.+++.++...+.++..|...+
T Consensus         9 ~lre~l~~le~~~~~~~~e~~~L~~~l   35 (97)
T 2eqb_B            9 QLKEDYNTLKRELSDRDDEVKRLREDI   35 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            344455555555555555665555555

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=93.17  E-value=1.5  Score=32.01  Aligned_cols=57  Identities=12%  Similarity=0.149  Sum_probs=24.0

Q ss_pred             HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5601         197 LTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGR  253 (270)
Q Consensus       197 L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~k  253 (270)
                      |+.+.+...++.+.+.......+.+...++.++..+......++.++....+.+...
T Consensus        11 lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a   67 (81)
T 1ic2_A           11 LKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA   67 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444443333333333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=92.18  E-value=2.8  Score=32.66  Aligned_cols=79  Identities=15%  Similarity=0.175  Sum_probs=41.8

Q ss_pred             HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601         172 ELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA  251 (270)
Q Consensus       172 e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld  251 (270)
                      +++.|...|..+|..|..+..+|..|+.++......+    .++.=|+.++.-...+-..=+.+++.+-++...|..++.
T Consensus        25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~  100 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE  100 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHH
Confidence            3455566666666666666666666655544322222    234445555555555555555555555555555555444


Q ss_pred             HHH
Q psy5601         252 GRV  254 (270)
Q Consensus       252 ~ki  254 (270)
                      .+.
T Consensus       101 ~Lq  103 (110)
T 2v4h_A          101 QLQ  103 (110)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.18  E-value=4.3  Score=33.45  Aligned_cols=44  Identities=5%  Similarity=0.008  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5601         218 LQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIH  261 (270)
Q Consensus       218 lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~  261 (270)
                      +...|......-..++.+.+.++..+......++.....|.+|.
T Consensus        99 AN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK  142 (154)
T 2ocy_A           99 ANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLK  142 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444455555555555555555555555555555553

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.01  E-value=0.8  Score=37.03  Aligned_cols=34  Identities=12%  Similarity=0.004  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         216 AELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQ  249 (270)
Q Consensus       216 ~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~  249 (270)
                      ..++.++..|+.+|.+....++.+...|..|+..
T Consensus        99 ~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v  132 (135)
T 2e7s_A           99 YAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKV  132 (135)
T ss_dssp             HHHHHHHHHHHHTTTHHHHCC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3366666666666666666666665555555443

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=91.45  E-value=2.1  Score=32.53  Aligned_cols=36  Identities=8%  Similarity=0.215  Sum_probs=20.1

Q ss_pred             HHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhh
Q psy5601         126 KELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVED  161 (270)
Q Consensus       126 ~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~  161 (270)
                      ....++...+..|...+..+..++..+...+..++.
T Consensus        10 ~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~   45 (112)
T 1l8d_A           10 TKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK   45 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            333444445555555555566666666666666653

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=91.35  E-value=4.2  Score=31.71  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=9.2

Q ss_pred             HHhhHHHHHHHHHHhHHHHHHHHH
Q psy5601         198 TNAKHAVEDKCKLLSQENAELQAA  221 (270)
Q Consensus       198 ~~e~e~l~~~~e~~~~r~~~lE~~  221 (270)
                      +...+.+..++-.++..|.++|..
T Consensus        48 r~~~~~l~~~iReLEq~NDDLER~   71 (111)
T 2v66_B           48 RAIKEQLHKYVRELEQANDDLERA   71 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHH
Confidence            333333333333333333333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=91.35  E-value=3.2  Score=30.71  Aligned_cols=38  Identities=11%  Similarity=0.177  Sum_probs=21.6

Q ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5601         188 KCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTL  232 (270)
Q Consensus       188 ~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~  232 (270)
                      ...+.++..|+..++       .+.--+.+|+.+|.+|..+|.=+
T Consensus        45 ~~~E~d~~~LrkdvD-------~a~l~r~dLE~kvesL~eEl~fL   82 (86)
T 3swk_A           45 EEAENTLQSFRQDVD-------NASLARLDLERKVESLQEEIAFL   82 (86)
T ss_dssp             HHHHHHHHHHHTTHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555544       44444566777777777666544

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=91.13  E-value=3.6  Score=30.53  Aligned_cols=11  Identities=9%  Similarity=-0.082  Sum_probs=4.0

Q ss_pred             HHHHHHhhhhH
Q psy5601         181 ETLDSELKCRD  191 (270)
Q Consensus       181 ~~lE~~l~~~d  191 (270)
                      ...+......+
T Consensus        31 ~k~e~~rkele   41 (89)
T 3bas_A           31 AKTERIKKELE   41 (89)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=90.82  E-value=2.8  Score=30.25  Aligned_cols=55  Identities=13%  Similarity=0.051  Sum_probs=36.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5601         210 LLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREI  264 (270)
Q Consensus       210 ~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l  264 (270)
                      .+..++++++.++.+|+.++..++.+.++.+.+...+...+-..+.-|..-=.+|
T Consensus         4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL   58 (72)
T 3cve_A            4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFEL   58 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4566777777777777777777777777777777666666666655554433333

>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4

Probab=90.51  E-value=0.026  Score=45.36  Aligned_cols=39  Identities=18%  Similarity=0.287  Sum_probs=28.2

Q ss_pred             CcccccccccccchhhhhHHHHHH----HHHhhHHHhhHHHHHhhhh
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLDTLLASQDAQRRIID   43 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~~~~~~~~~~~~~~~   43 (270)
                      |.|++++.+|++|+|.+  .||||    +..  |.-...+-+++++.
T Consensus        69 ~~y~~~~~~Fh~w~~~~--~~~GL~F~se~e--A~~F~~~~~~al~~  111 (130)
T 1qc6_A           69 LKYNQATPTFHQWRDAR--QVYGLNFASKEE--ATTFSNAMLFALNI  111 (130)
T ss_dssp             CEEEEEETTEEEEECSS--CEEEEEESCHHH--HHHHHHHHHHHHHH
T ss_pred             cEEeccCCeeEEEEcCC--EEEEEecCCHHH--HHHHHHHHHHHHHH
Confidence            78999999999999996  89999    444  34444444444433

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=90.08  E-value=3.3  Score=32.73  Aligned_cols=60  Identities=12%  Similarity=0.130  Sum_probs=30.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601         192 EEVKKLTNAKHAVEDKCKLLSQ----ENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA  251 (270)
Q Consensus       192 ~el~~L~~e~e~l~~~~e~~~~----r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld  251 (270)
                      .-|..|+.+++.+...++.+..    .+..++.+|..|+.+|++.+........+...|...++
T Consensus        15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~   78 (120)
T 3i00_A           15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD   78 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444443322    22336667777777777766555555555555554444

>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M

Probab=89.13  E-value=7.9  Score=31.36  Aligned_cols=13  Identities=23%  Similarity=0.176  Sum_probs=5.4

Q ss_pred             HHHHHHHHhhHHh
Q psy5601         147 EEVKKLTNAKHAV  159 (270)
Q Consensus       147 ~Eie~L~~qi~~L  159 (270)
                      .++..|+.....+
T Consensus        29 ~eN~~Lk~e~e~l   41 (155)
T 2oto_A           29 HENKDLKARLENA   41 (155)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444333

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=88.22  E-value=4.4  Score=31.96  Aligned_cols=61  Identities=11%  Similarity=0.225  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHH-------HHHHHHHHHhhH
Q psy5601          85 ANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCR-------DEEVKKLTNAKH  157 (270)
Q Consensus        85 a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~-------e~Eie~L~~qi~  157 (270)
                      ..|+.|+.+++.++.++..+...-+.         .+       .+|...|-+|+++|...       -.|.+.|+.+++
T Consensus        15 ~~Ie~Lkreie~lk~ele~l~~E~q~---------~v-------~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~   78 (120)
T 3i00_A           15 HLIERLYREISGLKAQLENMKTESQR---------VV-------LQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD   78 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44666666666666666666332211         22       33444555555555543       334555666555


Q ss_pred             Hhhh
Q psy5601         158 AVED  161 (270)
Q Consensus       158 ~LE~  161 (270)
                      .+..
T Consensus        79 ~l~~   82 (120)
T 3i00_A           79 ELRR   82 (120)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            4443

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=88.11  E-value=15  Score=34.21  Aligned_cols=67  Identities=16%  Similarity=0.231  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         168 ELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQD  237 (270)
Q Consensus       168 el~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~  237 (270)
                      .|..++++++..+..+++....-+--+-.|+.   +|..+......|+.++|..|..++.+|++.....+
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (471)
T 3mq9_A          401 LLQQELTEAQKGFQDVEAQAATANHTVMALMA---SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE  467 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcchhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555544433333332   22233322334555555555555555555555444

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=88.09  E-value=7  Score=29.47  Aligned_cols=27  Identities=33%  Similarity=0.334  Sum_probs=13.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHhh
Q psy5601         134 KNETLDSELKCRDEEVKKLTNAKHAVE  160 (270)
Q Consensus       134 ~~eele~eL~~~e~Eie~L~~qi~~LE  160 (270)
                      .++.++..|.....+=..|-.++..|+
T Consensus         5 ~~~~l~~eL~~l~~eE~~L~~eL~~lE   31 (96)
T 3q8t_A            5 DSEQLQRELKELALEEERLIQELEDVE   31 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555544544444444

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=88.07  E-value=4.4  Score=29.81  Aligned_cols=55  Identities=22%  Similarity=0.312  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh
Q psy5601          96 AYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK  156 (270)
Q Consensus        96 ~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi  156 (270)
                      -+--+...|+-+|.+++.      .--.++....+.++.+..|..+|..++.||.+|+.++
T Consensus        23 ~L~qEi~~Lr~kv~elEn------ErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l   77 (81)
T 3qh9_A           23 ELLQELRHLKIKVEELEN------ERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            556677778888888886      6666777778888888888888888888988888776

>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}

Probab=88.06  E-value=1.5  Score=35.75  Aligned_cols=81  Identities=19%  Similarity=0.166  Sum_probs=38.4

Q ss_pred             hhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         164 KAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRII  243 (270)
Q Consensus       164 ~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El  243 (270)
                      +..+.|...+..++..+............++..+...+..+..+...++..++-.+.--..|.+.|+.++.....++..|
T Consensus        59 ~~~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKqlEadl  138 (146)
T 2xnx_M           59 NRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQVEKDL  138 (146)
T ss_dssp             TTHHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-------------------------
T ss_pred             hhhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666677777776666666677777777777777777777777777777777888888888887776655554


Q ss_pred             H
Q psy5601         244 D  244 (270)
Q Consensus       244 ~  244 (270)
                      .
T Consensus       139 ~  139 (146)
T 2xnx_M          139 L  139 (146)
T ss_dssp             -
T ss_pred             H
Confidence            3

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=87.96  E-value=6.5  Score=28.97  Aligned_cols=48  Identities=19%  Similarity=0.191  Sum_probs=18.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601         204 VEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA  251 (270)
Q Consensus       204 l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld  251 (270)
                      +-+.|.-+..++.++..++..|..+.++++...+.+..+...|.+++.
T Consensus        18 avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~   65 (81)
T 2jee_A           18 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN   65 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            333333333333444444444444444433333333333333333333

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=87.80  E-value=8.3  Score=30.08  Aligned_cols=64  Identities=11%  Similarity=0.196  Sum_probs=29.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHhhhh-hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Q psy5601         134 KNETLDSELKCRDEEVKKLTNAKHAVEDK-CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKL  197 (270)
Q Consensus       134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~-~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L  197 (270)
                      .++.|...+..+...+..+.+.-.+|+.. ......-..++..|...+...|..|.++......+
T Consensus         7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~   71 (112)
T 1x79_B            7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA   71 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444555555555555543 22223334444445555554444444444444333

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=87.45  E-value=6.9  Score=28.76  Aligned_cols=56  Identities=20%  Similarity=0.235  Sum_probs=32.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601         210 LLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLAGRVAELATIHREIN  265 (270)
Q Consensus       210 ~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld~ki~eL~el~~~l~  265 (270)
                      .+-..+.+|.-+|.+++.+--..+......+.|+..|..++..+-.++..+|..|.
T Consensus        23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~   78 (81)
T 3qh9_A           23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            34444444444455555555555555555556777777777777777777766653

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=86.81  E-value=4.3  Score=31.11  Aligned_cols=73  Identities=16%  Similarity=0.208  Sum_probs=46.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH--HHH----Hhh---hh-----hchHHHHHHHHHHHHH
Q psy5601          83 STANVEEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVEL--RKE----LTS---VR-----SKNETLDSELKCRDEE  148 (270)
Q Consensus        83 s~a~v~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~el--e~e----~~~---l~-----~~~eele~eL~~~e~E  148 (270)
                      ++..+...+.+|+.+..++.+|+..+..++.      .+...  .-.    ++.   +.     .-.++.+..+..++.|
T Consensus        10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~------~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E   83 (100)
T 1go4_E           10 SREEADTLRLKVEELEGERSRLEEEKRMLEA------QLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAE   83 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHH
Confidence            3446888999999999999999999988875      22100  000    000   00     1123566777778888


Q ss_pred             HHHHHHhhHHhhh
Q psy5601         149 VKKLTNAKHAVED  161 (270)
Q Consensus       149 ie~L~~qi~~LE~  161 (270)
                      +++|+..+..++.
T Consensus        84 ~erLr~~v~~lEe   96 (100)
T 1go4_E           84 CERLRGLLRAMER   96 (100)
T ss_dssp             HHHHHHHHTTCC-
T ss_pred             HHHHHHHHHHHhc
Confidence            8888888866665

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=86.31  E-value=7.4  Score=31.95  Aligned_cols=20  Identities=30%  Similarity=0.596  Sum_probs=7.4

Q ss_pred             hhHHHHHHhhhhHHHHHHHH
Q psy5601         179 KNETLDSELKCRDEEVKKLT  198 (270)
Q Consensus       179 ~l~~lE~~l~~~d~el~~L~  198 (270)
                      .|..|+..+..+...|.++.
T Consensus        69 ~I~~L~~El~~l~~ki~dLe   88 (152)
T 3a7p_A           69 TLAILQKELKSKEQEIRRLK   88 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=86.22  E-value=6.1  Score=29.89  Aligned_cols=81  Identities=16%  Similarity=0.183  Sum_probs=44.7

Q ss_pred             HHHHHHHhhHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5601         172 ELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQAQLDTLLASQDAQRRIIDTLNHQLA  251 (270)
Q Consensus       172 e~~~L~~~l~~lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~~~~~El~~l~e~ld  251 (270)
                      +++.|...|..+|..+..++..|..|+..+......+    .++.=|+.++.-.+..-..=+.+++.+..+-..|..++.
T Consensus         3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~----E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~   78 (94)
T 3jsv_C            3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE   78 (94)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3456666777777777777777777766543322222    334445556666555555555555555544444444444


Q ss_pred             HHHHH
Q psy5601         252 GRVAE  256 (270)
Q Consensus       252 ~ki~e  256 (270)
                      .....
T Consensus        79 ~lq~q   83 (94)
T 3jsv_C           79 QLQRE   83 (94)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            44333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=86.17  E-value=9.1  Score=28.82  Aligned_cols=30  Identities=10%  Similarity=0.147  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5601         237 DAQRRIIDTLNHQLAGRVAELATIHREINT  266 (270)
Q Consensus       237 ~~~~~El~~l~e~ld~ki~eL~el~~~l~~  266 (270)
                      ..+...+-.+.+.++..-..+.-....|-+
T Consensus        63 n~~~~ql~e~~dE~~Sl~~q~~~~~~qLdk   92 (96)
T 3q8t_A           63 SEFKRQQLELDDELKSVENQMRYAQMQLDK   92 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444433

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=85.64  E-value=11  Score=29.49  Aligned_cols=25  Identities=12%  Similarity=0.150  Sum_probs=15.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601         134 KNETLDSELKCRDEEVKKLTNAKHA  158 (270)
Q Consensus       134 ~~eele~eL~~~e~Eie~L~~qi~~  158 (270)
                      .+-+++++-..+..-+..|+.-+..
T Consensus        40 ~l~~~eaQAaTCNqTV~tL~~SL~~   64 (121)
T 3mq7_A           40 GFQDVEAQAATANHTVMALMASLDA   64 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666676666666665533

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=85.57  E-value=9.9  Score=28.70  Aligned_cols=17  Identities=6%  Similarity=-0.009  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy5601         136 ETLDSELKCRDEEVKKL  152 (270)
Q Consensus       136 eele~eL~~~e~Eie~L  152 (270)
                      ..+..++..++.++..+
T Consensus        23 ~~l~~q~~~l~~~~~e~   39 (117)
T 2zqm_A           23 QLVVQQKQKVQLELTEA   39 (117)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=85.15  E-value=5.6  Score=29.26  Aligned_cols=33  Identities=12%  Similarity=0.107  Sum_probs=15.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         205 EDKCKLLSQENAELQAAISLVQAQLDTLLASQD  237 (270)
Q Consensus       205 ~~~~e~~~~r~~~lE~~i~~LE~~Lee~~~~~~  237 (270)
                      .......+.+..+.+.++.+|..+++.++...+
T Consensus        37 r~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e   69 (81)
T 1wt6_A           37 RTDNQNFASQLREAEARNRDLEAHVRQLQERME   69 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444455555555555555544444444

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=84.83  E-value=5.5  Score=30.14  Aligned_cols=47  Identities=13%  Similarity=0.164  Sum_probs=33.2

Q ss_pred             hhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhHHHHHHHHHH
Q psy5601         130 SVRSKNETLDSELKCRDEEVKKLTNAKHAVEDKCKAAVELRKELTSV  176 (270)
Q Consensus       130 ~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~~~eipel~~e~~~L  176 (270)
                      .|...+..-+..|..++..|..|+..+.........+|.|+.+++--
T Consensus         6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY   52 (94)
T 3jsv_C            6 DLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIY   52 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456667777777788888888887777776667777777776533

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=84.03  E-value=7.3  Score=36.51  Aligned_cols=20  Identities=5%  Similarity=0.141  Sum_probs=8.5

Q ss_pred             hhhchHHHHHHHHHHHHHHH
Q psy5601         131 VRSKNETLDSELKCRDEEVK  150 (270)
Q Consensus       131 l~~~~eele~eL~~~e~Eie  150 (270)
                      +..+..+++++-..+.--+-
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~  428 (471)
T 3mq9_A          409 AQKGFQDVEAQAATANHTVM  428 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHhhhcchhHH
Confidence            33344444444444433333

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=83.56  E-value=12  Score=27.87  Aligned_cols=23  Identities=13%  Similarity=0.291  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHhhHHHHHHhhhhH
Q psy5601         169 LRKELTSVRSKNETLDSELKCRD  191 (270)
Q Consensus       169 l~~e~~~L~~~l~~lE~~l~~~d  191 (270)
                      |....+.+...|..++..+..+.
T Consensus        70 L~~~~e~i~~~i~~le~~~~~~~   92 (107)
T 1fxk_A           70 LQEKLETLQLREKTIERQEERVM   92 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=83.47  E-value=12  Score=28.11  Aligned_cols=31  Identities=10%  Similarity=0.230  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5601         219 QAAISLVQAQLDTLLASQDAQRRIIDTLNHQ  249 (270)
Q Consensus       219 E~~i~~LE~~Lee~~~~~~~~~~El~~l~e~  249 (270)
                      +..+..+...+..+......+..++..+...
T Consensus        70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~  100 (112)
T 1l8d_A           70 HLDLNNSKNTLAKLIDRKSELERELRRIDME  100 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444333344333333

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=83.25  E-value=3.6  Score=29.67  Aligned_cols=27  Identities=26%  Similarity=0.311  Sum_probs=16.4

Q ss_pred             hchHHHHHHHHHHHHHHHHHHHhhHHh
Q psy5601         133 SKNETLDSELKCRDEEVKKLTNAKHAV  159 (270)
Q Consensus       133 ~~~eele~eL~~~e~Eie~L~~qi~~L  159 (270)
                      ..|.+++.+|..++.+|..|+.++..+
T Consensus        40 ~~I~eLEk~L~ekd~eI~~LqseLDKf   66 (72)
T 3nmd_A           40 ALIDELELELDQKDELIQMLQNELDKY   66 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355666666666666666666666443

>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M

Probab=83.09  E-value=17  Score=29.35  Aligned_cols=14  Identities=14%  Similarity=0.280  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHH
Q psy5601         218 LQAAISLVQAQLDT  231 (270)
Q Consensus       218 lE~~i~~LE~~Lee  231 (270)
                      ++.+.-.++..|..
T Consensus       126 ~~~~~~~~ek~ls~  139 (155)
T 2oto_A          126 LEEKKKALELAIDQ  139 (155)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333344444444

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=82.93  E-value=27  Score=33.49  Aligned_cols=54  Identities=19%  Similarity=0.137  Sum_probs=23.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHHhhhh--hhhhHHHHHHHHHHHHhhHHHHHHh
Q psy5601         134 KNETLDSELKCRDEEVKKLTNAKHAVEDK--CKAAVELRKELTSVRSKNETLDSEL  187 (270)
Q Consensus       134 ~~eele~eL~~~e~Eie~L~~qi~~LE~~--~~eipel~~e~~~L~~~l~~lE~~l  187 (270)
                      .+......+..+..+++.....|.+.-..  .+.|..|...++.++.+|..|+..+
T Consensus       136 Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~  191 (464)
T 1m1j_B          136 QRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAI  191 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444445555555555444332221  3334444444444444444444443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=81.97  E-value=19  Score=35.21  Aligned_cols=12  Identities=25%  Similarity=0.368  Sum_probs=6.4

Q ss_pred             HHHHHHHhhHHh
Q psy5601         148 EVKKLTNAKHAV  159 (270)
Q Consensus       148 Eie~L~~qi~~L  159 (270)
                      -|..|+.+++++
T Consensus        65 rINELKnqLEdl   76 (562)
T 3ghg_A           65 RINKLKNSLFEY   76 (562)
T ss_dssp             HHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHH
Confidence            355555555555

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=81.25  E-value=14  Score=35.85  Aligned_cols=66  Identities=17%  Similarity=0.226  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhHHhhhh
Q psy5601          88 EEWKKQLQAYKEENQKLKTKYIELEATKGVSEAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAKHAVEDK  162 (270)
Q Consensus        88 ~~wk~qL~~l~een~rL~~~i~Ele~~~~~~~~~~ele~e~~~l~~~~eele~eL~~~e~Eie~L~~qi~~LE~~  162 (270)
                      ..++++.++++.+|+..+..+..         .+..+...++.....+.+-.+.+.+++.+.....+.+.+++..
T Consensus        44 ~~i~aeNeaikkrNa~aka~Ye~---------~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek~  109 (497)
T 3iox_A           44 AALTAENTAIKKRNADAKADYEA---------KLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEKH  109 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33444555555555554444432         3555666667777777777778888888887777777766653

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=81.02  E-value=21  Score=28.96  Aligned_cols=11  Identities=0%  Similarity=0.066  Sum_probs=3.9

Q ss_pred             HHHHHHHHHHH
Q psy5601         218 LQAAISLVQAQ  228 (270)
Q Consensus       218 lE~~i~~LE~~  228 (270)
                      ++.+|..|+.+
T Consensus        99 aE~k~~eLEee  109 (147)
T 2b9c_A           99 SEGKCAELEEE  109 (147)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=80.91  E-value=5.5  Score=29.35  Aligned_cols=25  Identities=16%  Similarity=0.139  Sum_probs=13.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhHH
Q psy5601         134 KNETLDSELKCRDEEVKKLTNAKHA  158 (270)
Q Consensus       134 ~~eele~eL~~~e~Eie~L~~qi~~  158 (270)
                      .++.|+..|..++.+|..|..++..
T Consensus        23 Ele~le~~Ie~LE~~i~~le~~lad   47 (89)
T 2lw1_A           23 ELEQLPQLLEDLEAKLEALQTQVAD   47 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3455555555555556555555543

>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1

Probab=80.28  E-value=7.6  Score=30.86  Aligned_cols=40  Identities=28%  Similarity=0.427  Sum_probs=22.3

Q ss_pred             HHHHhhhhHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5601         183 LDSELKCRDEEVKKLTNAKHAVEDKCKLLSQENAELQAAISLVQ  226 (270)
Q Consensus       183 lE~~l~~~d~el~~L~~e~e~l~~~~e~~~~r~~~lE~~i~~LE  226 (270)
                      +++.+..+..+|.-|    +++..++..+..+++.++..|..++
T Consensus        49 ~qsele~k~aeLe~l----eeL~~ki~eL~~kvA~le~e~~~~e   88 (125)
T 2pms_C           49 LQSKLDAKKAKLSKL----EELSDKIDELDAEIAKLEDQLKAAE   88 (125)
T ss_dssp             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            334444555444443    5566666666666666666666544

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=80.24  E-value=3.8  Score=27.25  Aligned_cols=24  Identities=33%  Similarity=0.317  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Q psy5601          92 KQLQAYKEENQKLKTKYIELEATK  115 (270)
Q Consensus        92 ~qL~~l~een~rL~~~i~Ele~~~  115 (270)
                      .+|..|+..|.+|..+|.+++..|
T Consensus         4 q~l~kLKe~n~~L~~kv~~Le~~c   27 (48)
T 3vmx_A            4 RQILRLKQINIQLATKIQHLEFSC   27 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc
Confidence            456777788888877777776533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	270
d1i2ha_	145	b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxI	0.003

>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Homer
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.9 bits (80), Expect = 0.003
 Identities = 19/21 (90%), Positives = 20/21 (95%)

Query: 1  MTFTKTSQKFGQWSDIRANTV 21
          MTFTKTSQKFGQW+D RANTV
Sbjct: 67 MTFTKTSQKFGQWADSRANTV 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	270
d1i2ha_	145	Homer {Rat (Rattus norvegicus) [TaxId: 10116]}	98.87
d1xoda1	114	Sprouty-related, EVH1 domain-containing protein 1,	94.49
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	91.52
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	91.11
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	88.93
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	87.47

>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Homer
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=3.8e-11  Score=97.13  Aligned_cols=29  Identities=69%  Similarity=0.959  Sum_probs=27.0

Q ss_pred             CcccccccccccchhhhhHHHHHH----HHHhh
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLD   29 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~   29 (270)
                      |+|+|||++||||+|+|+||||||    ++.++
T Consensus        67 l~y~kas~~FhqWrd~r~~~V~GL~F~s~~da~   99 (145)
T d1i2ha_          67 MTFTKTSQKFGQWADSRANTVYGLGFSSEHHLS   99 (145)
T ss_dssp             CCEEEEETTEEEEEETTTTEEEEEEESSHHHHH
T ss_pred             ceeeecccceeEeeeccccceeecccCCHHHHH
Confidence            899999999999999999999999    66666

>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Enabled/VASP homology 1 domain (EVH1 domain)
domain: Sprouty-related, EVH1 domain-containing protein 1, Spred-1
species: Western clawed frog (Xenopus tropicalis) [TaxId: 8364]

Probab=94.49  E-value=0.0016  Score=49.71  Aligned_cols=28  Identities=14%  Similarity=0.245  Sum_probs=24.0

Q ss_pred             CcccccccccccchhhhhHHHHHH----HHHhhH
Q psy5601           1 MTFTKTSQKFGQWSDIRANTVSLV----QAQLDT   30 (270)
Q Consensus         1 m~ft~ts~~~gqwad~~an~~~~~----~~~l~~   30 (270)
                      |+|+++++.|++|+|+|  +||||    +....+
T Consensus        68 ~~Y~~~~~~FH~w~~~~--~~~GL~F~se~eA~~   99 (114)
T d1xoda1          68 LVYNKVTPTFHHWRIGD--KKFGLTFQSPADARA   99 (114)
T ss_dssp             CEEEEEETTEEEEEETT--EEEEEEESSHHHHHH
T ss_pred             CEEecCCCceEEEEeCC--EEEEEecCCHHHHHH
Confidence            78999999999999997  79999    665443

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.52  E-value=0.77  Score=33.28  Aligned_cols=36  Identities=11%  Similarity=0.264  Sum_probs=20.0

Q ss_pred             hhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHh
Q psy5601         165 AAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNA  200 (270)
Q Consensus       165 eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e  200 (270)
                      -.|.+...++.|...|..++..+..+..++..++..
T Consensus        66 ~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~  101 (107)
T d1fxka_          66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN  101 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666666666555555555555554443

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.11  E-value=2.1  Score=31.59  Aligned_cols=22  Identities=9%  Similarity=0.134  Sum_probs=10.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhh
Q psy5601         135 NETLDSELKCRDEEVKKLTNAK  156 (270)
Q Consensus       135 ~eele~eL~~~e~Eie~L~~qi  156 (270)
                      +++|.+++..++.++..|.+++
T Consensus         3 L~eL~~~~~~l~~~l~~l~~~i   24 (133)
T d1fxkc_           3 LAEIVAQLNIYQSQVELIQQQM   24 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444454444444

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.93  E-value=3  Score=30.07  Aligned_cols=26  Identities=4%  Similarity=0.023  Sum_probs=9.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy5601         208 CKLLSQENAELQAAISLVQAQLDTLL  233 (270)
Q Consensus       208 ~e~~~~r~~~lE~~i~~LE~~Lee~~  233 (270)
                      +......+..+...+..++..+..+.
T Consensus       139 ~~~~~~~~~~l~~~~~~l~~~~~~~~  164 (185)
T d2ap3a1         139 LNQNDATQQGVNEKSKAIEQNYKKLK  164 (185)
T ss_dssp             HTSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=87.47  E-value=1.8  Score=31.15  Aligned_cols=39  Identities=10%  Similarity=0.121  Sum_probs=28.9

Q ss_pred             hhhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHhh
Q psy5601         163 CKAAVELRKELTSVRSKNETLDSELKCRDEEVKKLTNAK  201 (270)
Q Consensus       163 ~~eipel~~e~~~L~~~l~~lE~~l~~~d~el~~L~~e~  201 (270)
                      ++..+.+..++..|...|..++..+...+.++..+...+
T Consensus        63 ~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~i  101 (110)
T d1seta1          63 PEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQV  101 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            445667778888888888888888888887777766543