Psyllid ID: psy5629

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILEEALSHAKLNQRKMSRRKQLSQTKSKVLSDSQK
Secondary Structure (PSIPRED)
ccccccHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccEEcccccccccccEEEEEEEEccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccEEEHHHHHHHHHHHccccEEEEEEEEccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccc
Coil and Loop (DISEMBL)
MIINLNESHREHLSvlfqlppevIQDFCTLTTnylkdgpnqklyKSVSkklslpsadnvqDSVEGLVYFLLLATILNISEYDFCNtlyhmgftqddKCEKILYEFYTQEKYNLYRTLISEYISVVATrshlnqcepkftirlhlenpdeqekqIDLEMDVRSVLNITQILEEALSHAKLNQRKMSRRKQLSQTKSKVLSDSQK
Flexible Loop (DISEMBL)
miinlneshrEHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILEEALShaklnqrkmsrrkqlsqtkskvlsdsqk
Low Complexity Region (SEG)
MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQklyksvskklslpsADNVQDSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILEEALSHAKLNQRKMSRRKQLSQTKSKVLSDSQK
Disordered region (IsUnstruct)
***********HLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLY**************VQDSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHL**********DLEMDVRSVLNITQILE********************************
Disordered Region (DISOPRED)
*I*N***SHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHL***********LEMDVRSVLNITQILEEALSHAKLN*RKMSRRKQLSQTK**V******
Disordered Region (DISEMBL)
MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILEEALSHAKL************************
Disordered Region (DISPRO)
*IINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILEEALSHAKLNQRKMSRRKQLSQTKSKVL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILEEALSHAKLNQRKMSRRKQLSQTKSKVLSDSQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q86X83	199	COMM domain-containing pr	yes	N/A	0.891	0.909	0.308	1e-19
Q8BXC6	199	COMM domain-containing pr	yes	N/A	0.896	0.914	0.32	3e-19
Q5R610	199	COMM domain-containing pr	yes	N/A	0.906	0.924	0.308	4e-19
Q54P14	200	COMM domain-containing pr	yes	N/A	0.561	0.57	0.333	1e-10

>sp|Q86X83|COMD2_HUMAN COMM domain-containing protein 2 OS=Homo sapiens GN=COMMD2 PE=1 SV=2

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 111/201 (55%), Gaps = 20/201 (9%)

Query: 1   MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
           M++ L+E H+EHL+ L Q+   V+ +F  +   +L+ G N K+Y+  ++KL++ S+D VQ
Sbjct: 1   MLLELSEEHKEHLAFLPQVDSAVVAEFGRIAVEFLRRGANPKIYEGAARKLNV-SSDTVQ 59

Query: 61  DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISE 120
             VEGL Y L  ++ L ISE DF ++++ +GF+++     +      +++    RT++SE
Sbjct: 60  HGVEGLTYLLTESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKE---IRTILSE 116

Query: 121 YISV--------------VATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNI 166
                             +A+RS   Q +P  TI+LHL    +   ++ L+ D  ++L++
Sbjct: 117 LAPSLPSYHNLEWRLDVQLASRSLRQQIKPAVTIKLHLNQNGDHNTKV-LQTDPATLLHL 175

Query: 167 TQILEEALSHAKLNQ-RKMSR 186
            Q LE+AL   K N  R++ R
Sbjct: 176 VQQLEQALEEMKTNHCRRVVR 196

May down-regulate activation of NF-kappa-B.
Homo sapiens (taxid: 9606)

>sp|Q8BXC6|COMD2_MOUSE COMM domain-containing protein 2 OS=Mus musculus GN=Commd2 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 111/200 (55%), Gaps = 18/200 (9%)

Query: 1   MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
           M+++L+E H+EHL+ L Q+   V+ +F  +   +L+ G N K+Y+  ++KL++ S+D +Q
Sbjct: 1   MLLDLSEEHKEHLAFLPQVDTAVVAEFGRIAVEFLRRGSNPKIYEGAARKLNV-SSDTIQ 59

Query: 61  DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQ-----------DDKCE--KILYEFYT 107
             VEGL Y L  ++ L ISE DF ++++ +GF++           D++ E   IL E   
Sbjct: 60  HGVEGLTYLLTESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKEIRTILNELAP 119

Query: 108 QEKYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNIT 167
             +   Y +L       +A+RS   Q +P  TI+LHL+   +      L+ D  ++L++ 
Sbjct: 120 --RLPSYHSLEWRLDVQLASRSLRQQIKPAVTIKLHLDQNGDHSTHF-LQTDPATLLHLV 176

Query: 168 QILEEALSHAKLNQ-RKMSR 186
           Q LE+AL   K N  R++ R
Sbjct: 177 QQLEQALEEMKTNHCRRVVR 196

May down-regulate activation of NF-kappa-B.

Mus musculus (taxid: 10090)

>sp|Q5R610|COMD2_PONAB COMM domain-containing protein 2 OS=Pongo abelii GN=COMMD2 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 108/198 (54%), Gaps = 14/198 (7%)

Query: 1   MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
           M++ L+E H+EHL+ L Q+   V+ +F  +   +L+ G N K+Y+  ++KL++ S+D VQ
Sbjct: 1   MLLELSEEHKEHLAFLPQVDSSVVAEFGRIAVEFLRRGANPKIYEGAARKLNV-SSDTVQ 59

Query: 61  DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNL------- 113
             VEGL Y L  ++ L ISE DF ++++ +GF+++     +      +++  +       
Sbjct: 60  HGVEGLTYLLTESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKEIRMILSELAP 119

Query: 114 ----YRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQI 169
               Y  L       +A+RS   Q +P  TI+LHL    +   +I L+ D  ++L++ Q 
Sbjct: 120 SLPSYHNLEWRLDVQLASRSLRQQIKPAVTIKLHLNQNGDHNTKI-LQTDPATLLHLVQQ 178

Query: 170 LEEALSHAKLNQ-RKMSR 186
           LE+AL   K N  R++ R
Sbjct: 179 LEQALEEMKTNHCRRVVR 196

May down-regulate activation of NF-kappa-B.

Pongo abelii (taxid: 9601)

>sp|Q54P14|COMD2_DICDI COMM domain-containing protein 2 OS=Dictyostelium discoideum GN=commd2 PE=4 SV=1

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 3/117 (2%)

Query: 1   MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
           MII L+ +H++ LS L  L  E+I +FC +   ++K G N+KLY   S+KL++ +AD ++
Sbjct: 1   MIIELDNTHKQDLSSLRSLSAEIISEFCKIALEFIKKGSNKKLYMGASQKLNI-AADKIE 59

Query: 61  DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTL 117
             V+ + Y     T   ++E DF +TL  +  +  D+  +IL E Y   + ++  TL
Sbjct: 60  SLVDSITYLFSECTRFMLNENDFNDTLAPIKLS--DEVIEILRESYFDNRKDIRNTL 114

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
307178337	575	Rhodopsin [Camponotus floridanus]	0.911	0.321	0.352	8e-21
311269533	199	PREDICTED: COMM domain-containing protei	0.891	0.909	0.333	5e-20
332214383	199	PREDICTED: LOW QUALITY PROTEIN: COMM dom	0.891	0.909	0.323	1e-19
383860922	570	PREDICTED: rhodopsin-like [Megachile rot	0.911	0.324	0.343	2e-19
260816940	199	hypothetical protein BRAFLDRAFT_113988 [	0.857	0.874	0.319	3e-19
317769332	199	comm domain-containing protein 2 [Ictalu	0.866	0.884	0.321	4e-19
443697226	198	hypothetical protein CAPTEDRAFT_180041 [	0.857	0.878	0.319	5e-19
332022229	202	COMM domain-containing protein 2 [Acromy	0.901	0.905	0.331	5e-19
308322191	199	comm domain-containing protein 2 [Ictalu	0.866	0.884	0.316	7e-19
426218147	199	PREDICTED: COMM domain-containing protei	0.891	0.909	0.323	1e-18

>gi|307178337|gb|EFN67091.1| Rhodopsin [Camponotus floridanus]

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 120/204 (58%), Gaps = 19/204 (9%)

Query: 1   MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
           M++ L   H+ H+  L    P V+QDFC L  +YL+ GPN K+Y + ++KL++   + ++
Sbjct: 1   MLLTLKPDHKRHILFLTGQTPPVLQDFCKLAVDYLQKGPNVKVYNAAAQKLNV-ELNAIK 59

Query: 61  DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTL--- 117
           +SVEGLV  LL +    +S  DF +++  +GFT++   E IL + Y+ +K  +  TL   
Sbjct: 60  NSVEGLVNLLLESCKYKLSAEDFQDSVIALGFTEEK--EAILSKLYSIKKDEISNTLEEI 117

Query: 118 ---ISEYISV-------VATRSHLNQCEPKFTIRLHLENPD--EQEKQIDLEMDVRSVLN 165
              +S+Y  +        A+RS L Q  P  T+ L L+NPD  ++ + + L+ D  ++L+
Sbjct: 118 GFKLSKYHDMEWRFEVQTASRSLLKQVAPLITLDLSLKNPDTLDEIEHVLLQTDPTNLLH 177

Query: 166 ITQILEEALSHAK-LNQRKMSRRK 188
           ITQ LEEAL  ++ L+ R++SR K
Sbjct: 178 ITQELEEALQESRNLHIRRISRAK 201

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|311269533|ref|XP_003132530.1| PREDICTED: COMM domain-containing protein 2-like isoform 1 [Sus scrofa]

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 115/201 (57%), Gaps = 20/201 (9%)

Query: 1   MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
           M+++L+E H+EHL+ L Q+   V+ +F  +   +L+ G N K+Y+  ++KL + S+D VQ
Sbjct: 1   MLLDLSEEHKEHLAFLPQVDSAVVAEFGRIAVEFLRRGSNPKIYEGAARKLGV-SSDTVQ 59

Query: 61  DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISE 120
             VEGL+Y L  ++ L ISE DF ++++ +GF++D     +      +++    RT++SE
Sbjct: 60  HGVEGLIYLLTESSKLMISELDFQDSVFVLGFSEDLNKLLLQLYLDNRKE---IRTILSE 116

Query: 121 -------YISV-------VATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNI 166
                  Y S+       +A+RS   Q +P  TI+LHL    E   Q+ L+ D  ++L++
Sbjct: 117 LAPDLPSYHSLEWRLDVQLASRSLRQQIKPTVTIKLHLNQNGEHNTQV-LQTDPATLLHL 175

Query: 167 TQILEEALSHAKLNQ-RKMSR 186
            Q LE+AL   K N  R++ R
Sbjct: 176 VQQLEQALEEMKTNHCRRVVR 196

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332214383|ref|XP_003256316.1| PREDICTED: LOW QUALITY PROTEIN: COMM domain-containing protein 2 [Nomascus leucogenys]

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 114/201 (56%), Gaps = 20/201 (9%)

Query: 1   MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
           M++ L+E H+EHL+ L ++   V+ +F  +   +L+ G N K+Y+  ++KL++ S+D VQ
Sbjct: 1   MLLELSEEHKEHLAFLPEVDSAVVAEFGRIAVEFLRRGANPKIYEGAARKLNV-SSDTVQ 59

Query: 61  DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISE 120
             VEGL Y L  ++ L ISE DF ++++ +GF+  D+  K+L + Y   +  + RT+++E
Sbjct: 60  HGVEGLTYLLTESSKLMISELDFQDSVFVLGFS--DELNKLLAQLYLDNRKEI-RTILNE 116

Query: 121 YISV--------------VATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNI 166
                             +A+RS   Q +P  TI+LHL    +   +I L+ D  ++L++
Sbjct: 117 LAPSLPSYHNLEWRLDVQLASRSLRQQIKPAVTIKLHLNQNGDHNTKI-LQTDPATLLHL 175

Query: 167 TQILEEALSHAKLNQ-RKMSR 186
            Q LE+AL   K N  R++ R
Sbjct: 176 VQQLEQALEEMKTNHCRRVVR 196

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|383860922|ref|XP_003705936.1| PREDICTED: rhodopsin-like [Megachile rotundata]

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 118/204 (57%), Gaps = 19/204 (9%)

Query: 1   MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
           M++ L   H++H+ +L +   +V+QDFC L  +YL+ GPN KLY + ++KL +  A+ ++
Sbjct: 1   MLLTLKPDHKKHVLLLVEHTSQVLQDFCKLAIDYLQKGPNVKLYNAAAQKLEV-EANVIK 59

Query: 61  DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTL--- 117
           +SVEGLV  LL +    +S  DF +++  +GF+++   E IL + Y+ +K  +  TL   
Sbjct: 60  NSVEGLVNLLLESCKYKLSAEDFRDSVISLGFSEEQ--EVILSKLYSVKKDEILDTLTNI 117

Query: 118 ---ISEYISV-------VATRSHLNQCEPKFTIRLHLENP--DEQEKQIDLEMDVRSVLN 165
              + EY  +       +A+RS L Q  P  T+   ++NP  DE  + + L+ D  ++L+
Sbjct: 118 GFKLPEYHDMEWRFEVQIASRSLLKQVAPLVTLDFSVKNPGKDESIEHVLLQTDPINLLH 177

Query: 166 ITQILEEALSHAKLNQ-RKMSRRK 188
           ITQ LEEAL   +    R++SR K
Sbjct: 178 ITQELEEALQEGRSQHIRRLSRVK 201

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260816940|ref|XP_002603345.1| hypothetical protein BRAFLDRAFT_113988 [Branchiostoma floridae] gi|229288664|gb|EEN59356.1| hypothetical protein BRAFLDRAFT_113988 [Branchiostoma floridae]

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 108/191 (56%), Gaps = 17/191 (8%)

Query: 1   MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
           M++ L + H+EHL  L ++  EV+++FC +   +++ GPN KLY+S ++KLS+ S + VQ
Sbjct: 1   MLLVLADEHKEHLGFLNEVDVEVVREFCRIAMEFIRSGPNPKLYQSAAQKLSVAS-ETVQ 59

Query: 61  DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQD-------------DKCEKILYEFYT 107
             VEGL++ L  A    ISE DF +++  +GF++D              +   IL E   
Sbjct: 60  HGVEGLMFLLTEAARYMISEIDFQDSIMTLGFSEDLRSLLLQLYLDNRTEIRTILSEMSM 119

Query: 108 QEKYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNIT 167
              +  Y  L       VA+R+  +Q  P+  ++LH ++  E++ Q+ L+ D  ++L++T
Sbjct: 120 DLPH--YHNLEWRLEVTVASRTLRHQVTPRLMMKLHTQDSGEKDVQV-LQTDPVNLLHMT 176

Query: 168 QILEEALSHAK 178
           ++LE AL+  K
Sbjct: 177 RVLEGALAEMK 187

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|317769332|ref|NP_001188091.1| comm domain-containing protein 2 [Ictalurus punctatus] gi|308324433|gb|ADO29351.1| comm domain-containing protein 2 [Ictalurus punctatus]

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 107/193 (55%), Gaps = 17/193 (8%)

Query: 1   MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
           M++ L+E  +EHL  L  + P V+ +F  +   +LK G N K+Y+  ++KLS+P A+ VQ
Sbjct: 1   MLLVLSEEQKEHLGFLSDVDPAVVGEFGRIAVEFLKKGSNPKIYEGAARKLSVP-AETVQ 59

Query: 61  DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQD-------------DKCEKILYEFYT 107
             VEGL++ L  ++ L ISE DF +++  +GF+++              +  +IL E   
Sbjct: 60  HGVEGLMFILTESSKLMISEVDFQDSVLVLGFSEELNKLLLQLYLENRKEIRQILSELAP 119

Query: 108 QEKYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNIT 167
               + Y+ L       +A+R+   Q +P  T++LHLE+ D Q  ++ L+ D  ++L++ 
Sbjct: 120 --SLSRYQNLEWRLDVQLASRALRQQVKPTVTLKLHLESGDTQSARV-LQTDPATLLHLI 176

Query: 168 QILEEALSHAKLN 180
           Q LE AL+  K N
Sbjct: 177 QELERALAEVKSN 189

Source: Ictalurus punctatus

Species: Ictalurus punctatus

Genus: Ictalurus

Family: Ictaluridae

Order: Siluriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443697226|gb|ELT97761.1| hypothetical protein CAPTEDRAFT_180041 [Capitella teleta]

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 103/191 (53%), Gaps = 17/191 (8%)

Query: 1   MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
           MI+ LNE H++HLS L  +  +V+++FC +   ++K  PNQK Y S S+KL +  AD V+
Sbjct: 1   MIVALNEEHKQHLSFLSSVSADVVREFCQIAVEFMKKEPNQKAYNSASQKLGV-EADTVR 59

Query: 61  DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISE 120
            +VEGL++     T   +SE D   TL  +   ++    +++ E+Y  E   +   L   
Sbjct: 60  HAVEGLIHLFTSLTAQMVSEQDLTTTLLPLAMPEE--VSEVIKEYYLSESAEIRSILTHM 117

Query: 121 YISV-------------VATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNIT 167
            + V             VA+R+   Q +P  T++L  +N DE + Q+ L+ D  ++L++T
Sbjct: 118 SVDVAHYHDLQWRLDVKVASRTLRQQTDPIITLKLKTKNGDEIQSQV-LQTDPVNLLHLT 176

Query: 168 QILEEALSHAK 178
             LE+AL+  K
Sbjct: 177 STLEDALNELK 187

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|332022229|gb|EGI62544.1| COMM domain-containing protein 2 [Acromyrmex echinatior]

 Score = 99.8 bits (247), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 114/202 (56%), Gaps = 19/202 (9%)

Query: 1   MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
           M++ L   H++H+  L +    V+QDFC L  +YL+ GPN K+Y + ++KL++   + ++
Sbjct: 1   MLLTLKPDHKKHMLFLVEQSSPVLQDFCKLALDYLQKGPNVKVYNAAAQKLNV-ELEVIK 59

Query: 61  DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNL------- 113
           +SVEGLV  LL +    +S  DF +++  +GFT+D   E IL + Y+ +K  +       
Sbjct: 60  NSVEGLVNLLLESCKYKLSTEDFRDSIVALGFTEDK--EAILSKLYSIKKDEVSDALKEI 117

Query: 114 ------YRTLISEYISVVATRSHLNQCEPKFTIRLHLENPD--EQEKQIDLEMDVRSVLN 165
                 Y  +   +    A+RS L Q  P  ++ L L+NPD  E+ + + L+ D  ++L+
Sbjct: 118 GFKLPRYHDMEWRFEVQTASRSLLKQVAPLISLDLSLKNPDNPEEIEHVLLQTDPTNLLH 177

Query: 166 ITQILEEALSHAKLNQ-RKMSR 186
           ITQ LEEAL  ++    R++SR
Sbjct: 178 ITQELEEALQESRSQHIRRISR 199

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308322191|gb|ADO28233.1| comm domain-containing protein 2 [Ictalurus furcatus]

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 107/193 (55%), Gaps = 17/193 (8%)

Query: 1   MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
           M++ L+E  +EHL  L  + P V+ +F  +   +LK G N K+Y+  ++KLS+P A+ VQ
Sbjct: 1   MLLVLSEEQKEHLGFLSDVDPAVVGEFGRIAVEFLKKGSNPKIYEGAARKLSVP-AETVQ 59

Query: 61  DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQD-------------DKCEKILYEFYT 107
             VEGL++ L  ++ L ISE DF +++  +GF+++              +  +IL E   
Sbjct: 60  HGVEGLMFILTESSKLMISEVDFQDSVLVLGFSEELNKLLLQLYLENRKEIRQILSELAP 119

Query: 108 QEKYNLYRTLISEYISVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNIT 167
               + Y+ L       +A+R+   Q +P  T+++HLE+ D Q  ++ L+ D  ++L++ 
Sbjct: 120 --SLSRYQNLEWRLDVQLASRALRQQVKPTVTLKIHLESGDTQSARV-LQTDPATLLHLI 176

Query: 168 QILEEALSHAKLN 180
           Q LE AL+  K N
Sbjct: 177 QELERALAEVKSN 189

Source: Ictalurus furcatus

Species: Ictalurus furcatus

Genus: Ictalurus

Family: Ictaluridae

Order: Siluriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426218147|ref|XP_004003311.1| PREDICTED: COMM domain-containing protein 2 [Ovis aries]

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 115/201 (57%), Gaps = 20/201 (9%)

Query: 1   MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQ 60
           M+++L+E H+EHL+ L ++   V+ +F  +   +L+ G N K+Y+  ++KLS+ S+D VQ
Sbjct: 1   MLLDLSEEHKEHLAFLPKVDSAVVAEFGRIAVEFLRRGSNPKIYEGAARKLSV-SSDTVQ 59

Query: 61  DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISE 120
             VEGL+Y L  ++ L ISE DF ++++ +GF ++     +      +++    RT++SE
Sbjct: 60  HGVEGLIYLLTESSKLMISELDFQDSVFVLGFPEELNKLLLQLYLDNRKE---IRTILSE 116

Query: 121 -------YISV-------VATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNI 166
                  Y S+       +A+RS   Q +P  TI+LHL    +   Q+ L+ D  ++L++
Sbjct: 117 LAPDLPSYHSLEWRLDVQLASRSLRQQIKPSVTIKLHLNQNGDHNTQV-LQTDPATLLHL 175

Query: 167 TQILEEALSHAKLNQ-RKMSR 186
            Q LE+AL   K N  R++ R
Sbjct: 176 VQQLEQALEEMKTNHCRRVVR 196

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
UNIPROTKB|Q86X83	199	COMMD2 "COMM domain-containing	0.886	0.904	0.316	3.6e-18
MGI|MGI:1098806	199	Commd2 "COMM domain containing	0.891	0.909	0.298	7.5e-18
ZFIN|ZDB-GENE-040718-118	199	commd2 "COMM domain containing	0.896	0.914	0.275	2e-15
DICTYBASE|DDB_G0284879	200	commd2 "COMM domain-containing	0.891	0.905	0.228	2.8e-09

UNIPROTKB|Q86X83 COMMD2 "COMM domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 64/202 (31%), Positives = 107/202 (52%)

Query:     1 MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQXXXXXXXXXXXXXXADNVQ 60
             M++ L+E H+EHL+ L Q+   V+ +F  +   +L+ G N               +D VQ
Sbjct:     1 MLLELSEEHKEHLAFLPQVDSAVVAEFGRIAVEFLRRGANPKIYEGAARKLNVS-SDTVQ 59

Query:    61 DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISE 120
               VEGL Y L  ++ L ISE DF ++++ +GF+++    K+L + Y   +  + RT++SE
Sbjct:    60 HGVEGLTYLLTESSKLMISELDFQDSVFVLGFSEE--LNKLLLQLYLDNRKEI-RTILSE 116

Query:   121 -------YISV-------VATRSHLNQCEPKFTIRLHL-ENPDEQEKQIDLEMDVRSVLN 165
                    Y ++       +A+RS   Q +P  TI+LHL +N D   K   L+ D  ++L+
Sbjct:   117 LAPSLPSYHNLEWRLDVQLASRSLRQQIKPAVTIKLHLNQNGDHNTKV--LQTDPATLLH 174

Query:   166 ITQILEEALSHAKLNQ-RKMSR 186
             + Q LE+AL   K N  R++ R
Sbjct:   175 LVQQLEQALEEMKTNHCRRVVR 196

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1098806 Commd2 "COMM domain containing 2" [Mus musculus (taxid:10090)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 60/201 (29%), Positives = 106/201 (52%)

Query:     1 MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQXXXXXXXXXXXXXXADNVQ 60
             M+++L+E H+EHL+ L Q+   V+ +F  +   +L+ G N               +D +Q
Sbjct:     1 MLLDLSEEHKEHLAFLPQVDTAVVAEFGRIAVEFLRRGSNPKIYEGAARKLNVS-SDTIQ 59

Query:    61 DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISE 120
               VEGL Y L  ++ L ISE DF ++++ +GF+++    K+L + Y   +  + RT+++E
Sbjct:    60 HGVEGLTYLLTESSKLMISELDFQDSVFVLGFSEE--LNKLLLQLYLDNRKEI-RTILNE 116

Query:   121 -------YISV-------VATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNI 166
                    Y S+       +A+RS   Q +P  TI+LHL+   +      L+ D  ++L++
Sbjct:   117 LAPRLPSYHSLEWRLDVQLASRSLRQQIKPAVTIKLHLDQNGDHSTHF-LQTDPATLLHL 175

Query:   167 TQILEEALSHAKLNQ-RKMSR 186
              Q LE+AL   K N  R++ R
Sbjct:   176 VQQLEQALEEMKTNHCRRVVR 196

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040718-118 commd2 "COMM domain containing 2" [Danio rerio (taxid:7955)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 55/200 (27%), Positives = 106/200 (53%)

Query:     1 MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQXXXXXXXXXXXXXXADNVQ 60
             M++ L+E H+EHL  L ++ P V+ +F  +   +LK G N               +++VQ
Sbjct:     1 MLLVLSEEHKEHLGFLSEVDPAVVGEFGRIAVEFLKKGSNPKIYEGAARKLSVS-SESVQ 59

Query:    61 DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTL--- 117
               VEGL++ L  ++ L ISE DF +++  +GF +  +   +L + Y + +  + + L   
Sbjct:    60 HGVEGLMFLLTESSKLMISELDFQDSVLVLGFPE--QLNDLLLQLYLENRKEIRQILSKL 117

Query:   118 ---ISEYISV-------VATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNIT 167
                I +Y ++       +A+R+  +Q +P  T++LHLE+  ++   + L+ D  ++ ++ 
Sbjct:   118 APSIPQYHNLEWRLDVQLASRALRHQVKPTVTMKLHLEDGAKRSAHV-LQTDPATLQHLI 176

Query:   168 QILEEALSHAKLNQ-RKMSR 186
             Q LE AL+  K N  R++ R
Sbjct:   177 QELERALAELKSNHCRRILR 196

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0284879 commd2 "COMM domain-containing protein 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 137 (53.3 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 45/197 (22%), Positives = 90/197 (45%)

Query:     1 MIINLNESHREHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQXXXXXXXXXXXXXXADNVQ 60
             MII L+ +H++ LS L  L  E+I +FC +   ++K G N+              AD ++
Sbjct:     1 MIIELDNTHKQDLSSLRSLSAEIISEFCKIALEFIKKGSNKKLYMGASQKLNIA-ADKIE 59

Query:    61 DSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTL--- 117
               V+ + Y     T   ++E DF +TL  +  +  D+  +IL E Y   + ++  TL   
Sbjct:    60 SLVDSITYLFSECTRFMLNENDFNDTLAPIKLS--DEVIEILRESYFDNRKDIRNTLQEF 117

Query:   118 ---ISEYISV-------VATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNIT 167
                +  Y ++       +A RS  +   P + ++L  +   +   +  L+ D  ++ ++ 
Sbjct:   118 YPHLDHYQNLEWRLDTQIANRSLGSSINPIYLLKLITKCGSDNPIEHLLQTDPNNLKHLC 177

Query:   168 QILEEALSHAKLNQRKM 184
               LE AL+  +  + ++
Sbjct:   178 NELESALNEIRTYENRL 194


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      203       189   0.00089  110 3  11 22  0.45    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  553 (59 KB)
  Total size of DFA:  151 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.43u 0.22s 19.65t   Elapsed:  00:00:01
  Total cpu time:  19.43u 0.22s 19.65t   Elapsed:  00:00:01
  Start:  Thu Aug 15 13:13:21 2013   End:  Thu Aug 15 13:13:22 2013

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q86X83	COMD2_HUMAN	No assigned EC number	0.3084	0.8916	0.9095	yes	N/A
Q8BXC6	COMD2_MOUSE	No assigned EC number	0.32	0.8965	0.9145	yes	N/A
Q5R610	COMD2_PONAB	No assigned EC number	0.3080	0.9064	0.9246	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	203
cd04750	166	cd04750, Commd2, COMM_Domain containing protein 2	4e-21
pfam07258	177	pfam07258, HCaRG, HCaRG protein	3e-04

>gnl|CDD|240098 cd04750, Commd2, COMM_Domain containing protein 2

 Score = 85.1 bits (211), Expect = 4e-21
 Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 16/166 (9%)

Query: 26  DFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCN 85
           +FC L   +L  G NQK Y+  ++KL +   + VQ  VE LVY L+ +T L +SE DF +
Sbjct: 1   EFCKLAIEFLFKGINQKKYEGAARKLEV-EVETVQHGVEALVYLLIESTKLKLSERDFQD 59

Query: 86  TLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISEYISV-------------VATRSHLN 132
           ++  +GF+ D    +IL + Y   +  +   L      +             +A+RS  +
Sbjct: 60  SIEFLGFSDDLN--EILLQLYESNRKEIRNILKELSPDLPHYHNLEWRLDVQIASRSLRS 117

Query: 133 QCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILEEALSHAK 178
           Q +P  T++LHLE+ +++ +   L+ D  +++++TQ LE+AL  +K
Sbjct: 118 QVKPVITMKLHLEDENKKIETHLLQTDPANLVHLTQTLEQALQESK 163

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB. Length = 166

>gnl|CDD|219352 pfam07258, HCaRG, HCaRG protein

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 31/177 (17%), Positives = 70/177 (39%), Gaps = 17/177 (9%)

Query: 13  LSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLL 72
           LS+L +L  E  +    +    L    N +  + +++ LS+ S + ++  +  L   L  
Sbjct: 1   LSLLNKLDSEQFRQLLRIVVESLLGKSNPEEVEKLAESLSI-SEEELKQLLAALTTLLKE 59

Query: 73  ATILNISEYDFCNTLYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISEYISV-------- 124
           A   N+ E +    L  +G  ++    + + + + + +  L   L+   +S+        
Sbjct: 60  AAKHNLDEEELSQELEQLGLPEEHA--EAISKVWKENRKELREALLERSLSLPHLQDLDW 117

Query: 125 -----VATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILEEALSH 176
                +++ S      P   ++L L N D +E  +  E+ +  +  +   LE A   
Sbjct: 118 RLDVQISSSSLAKVNSPVILLQLKLSNGDSKE-TVTFELSLEELQELLNELERAQKE 173

This family consists of several mammalian HCaRG(hypertension-related, calcium-regulated gene) proteins. HCaRG is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals. HCaRG is a nuclear protein potentially involved in the control of cell proliferation. Length = 177

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
cd04750	166	Commd2 COMM_Domain containing protein 2. The COMM	100.0
cd04752	174	Commd4 COMM_Domain containing protein 4. The COMM	99.86
PF07258	178	HCaRG: HCaRG protein; InterPro: IPR009886 This fam	99.83
cd04758	186	Commd10 COMM_Domain containing protein 10. The COM	99.43
cd04751	95	Commd3 COMM_Domain containing protein 3. The COMM	99.32
cd04756	176	Commd8 COMM_Domain containing protein 8. The COMM	99.08
cd04755	180	Commd7 COMM_Domain containing protein 7. The COMM	99.04
cd04753	110	Commd5_HCaRG COMM_Domain containing protein 5, als	98.94
cd04748	87	Commd COMM_Domain, a family of domains found at th	98.82
cd04757	108	Commd9 COMM_Domain containing protein 9. The COMM	98.74
cd04749	174	Commd1_MURR1 COMM_Domain containing protein 1, als	98.57
PF05225	45	HTH_psq: helix-turn-helix, Psq domain; InterPro: I	86.76
cd04754	86	Commd6 COMM_Domain containing protein 6. The COMM	82.2

>cd04750 Commd2 COMM_Domain containing protein 2

Probab=100.00  E-value=1.4e-43  Score=292.81  Aligned_cols=152  Identities=34%  Similarity=0.599  Sum_probs=147.3

Q ss_pred             HHHHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhhccCChhhhhhhhhhcCCCChhHHHHHHHHH
Q psy5629          26 DFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILYEF  105 (203)
Q Consensus        26 efckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK~~ise~dF~dsl~~l~F~ee~~~~~vL~q~  105 (203)
                      ||||+|+|||++|||+|+|+.+|+|||+++ ++|+++|+||.+|+++|+|+++++.+|.+++..+|||++  +.++|+++
T Consensus         1 e~~~~a~~~l~~g~n~~~~~~~A~~l~i~~-~~vk~~v~aL~~ll~~a~K~~l~~~~~~~~L~~l~~~~e--~~~~l~~~   77 (166)
T cd04750           1 EFCKLAIEFLFKGINQKKYEGAARKLEVEV-ETVQHGVEALVYLLIESTKLKLSERDFQDSIEFLGFSDD--LNEILLQL   77 (166)
T ss_pred             CHHHHHHHHHHcCCChHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCHH--HHHHHHHH
Confidence            799999999999999999999999999999 999999999999999999999999999999999999999  99999999


Q ss_pred             HHHHHHhHHHHhhhhhh--------------heecccccccccCceEEEEEeecCCCcccccceeecChhHHHHHHHHHH
Q psy5629         106 YTQEKYNLYRTLISEYI--------------SVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILE  171 (203)
Q Consensus       106 y~~~r~~I~r~iLs~~~--------------vqiASRsl~~q~~P~vtmkL~l~~~~~~~~~~~LqTDp~~L~hl~~~LE  171 (203)
                      |.+||..| |..+++.+              |++|||+++++.+|.|+|+|++++++.+.+.++|||||.+|.||+++||
T Consensus        78 y~~~~~~l-~~~l~~~~~~lp~l~dleWRvDv~isS~~l~~~~~P~i~mkL~l~~~~~~~~~~~l~td~~~l~~l~~eLe  156 (166)
T cd04750          78 YESNRKEI-RNILKELSPDLPHYHNLEWRLDVQIASRSLRSQVKPVITMKLHLEDENKKIETHLLQTDPANLVHLTQTLE  156 (166)
T ss_pred             HHHHHHHH-HHHHHhcCCCCccccCCceeEEeEEcchhhHhhcCceEEEEEEecCCCCcccceEEEeCHHHHHHHHHHHH
Confidence            99999999 99998874              9999999999999999999999988776667899999999999999999


Q ss_pred             HHHHHhhhhh
Q psy5629         172 EALSHAKLNQ  181 (203)
Q Consensus       172 ~AL~e~kT~h  181 (203)
                      +||++|+|+|
T Consensus       157 ~Al~~~~t~~  166 (166)
T cd04750         157 QALQESKTLH  166 (166)
T ss_pred             HHHHHhhccC
Confidence            9999999987

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04752 Commd4 COMM_Domain containing protein 4

Probab=99.86  E-value=1.2e-20  Score=156.87  Aligned_cols=151  Identities=15%  Similarity=0.216  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHhcC-CchhhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhhccCChhhhhhhhhhcCCCChhHHHHHHH
Q psy5629          25 QDFCTLTTNYLKDG-PNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTLYHMGFTQDDKCEKILY  103 (203)
Q Consensus        25 ~efckiAiefl~~G-~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK~~ise~dF~dsl~~l~F~ee~~~~~vL~  103 (203)
                      .=.|-..+.+|..+ .+...+...-+..+++. ++++.+|+||.++|.+|+|+++++.+|.+.|..+|||++  +.+.|.
T Consensus         7 k~~~~~v~~~~~~~~~~~~~~~kl~~~~~~~~-~~lk~~va~l~fiL~~A~k~n~~~~~l~~eL~~lglp~e--~~~~l~   83 (174)
T cd04752           7 KLLCAQVLKDLLGEGIDYEKVLKLTADAKFES-GDVKASIAVLSFILSSAAKYNVDGESLSSELQQLGLPKE--HATSLC   83 (174)
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHhCCCH-hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCHH--HHHHHH
Confidence            34566656555444 55556667777789999 999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHHHhHHHHhhhhhh--------------heecccccccccCceEEEEEeecCCC-cccccceeecChhHHHHHHH
Q psy5629         104 EFYTQEKYNLYRTLISEYI--------------SVVATRSHLNQCEPKFTIRLHLENPD-EQEKQIDLEMDVRSVLNITQ  168 (203)
Q Consensus       104 q~y~~~r~~I~r~iLs~~~--------------vqiASRsl~~q~~P~vtmkL~l~~~~-~~~~~~~LqTDp~~L~hl~~  168 (203)
                      +.|.++|.+| |..+....              +++||+++++...|.++|+|++.+++ +..+.+.++||+..|.+|+.
T Consensus        84 ~~~~~~~~~l-~~~l~~~~l~~~~L~d~~WRld~~lsSs~l~~~~~P~~~l~L~v~~~~~~~~~~v~~e~s~~ql~~L~~  162 (174)
T cd04752          84 RSYEEKQSKL-QESLRANSLRLSRLESVDWRVDYILSSSELQEVNEPLVQLRLKVRNADTGEITPHPFSVSADKFRVLLA  162 (174)
T ss_pred             HHHHHHHHHH-HHHHHhcCCCCCcccccceeeEEEEcchhhhhcCCCeEEEEEeeecCCCCCcceEEEEecHHHHHHHHH
Confidence            9999999999 98888774              89999999999999999999999755 34456799999999999999


Q ss_pred             HHHHHHHHhhh
Q psy5629         169 ILEEALSHAKL  179 (203)
Q Consensus       169 ~LE~AL~e~kT  179 (203)
                      +||+|.+.|++
T Consensus       163 eLe~A~~~m~~  173 (174)
T cd04752         163 ELKQAQTLMET  173 (174)
T ss_pred             HHHHHHHHHhc
Confidence            99999999986

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>PF07258 HCaRG: HCaRG protein; InterPro: IPR009886 This family consists of several mammalian HCaRG(hypertension-related, calcium-regulated gene) proteins

Probab=99.83  E-value=2.6e-23  Score=167.01  Aligned_cols=163  Identities=22%  Similarity=0.388  Sum_probs=72.0

Q ss_pred             hccccCCChHHHHHHHHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhhccCChhhhhhhhhhcCC
Q psy5629          13 LSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTLYHMGF   92 (203)
Q Consensus        13 L~fL~~~~~~vv~efckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK~~ise~dF~dsl~~l~F   92 (203)
                      +++|..++.+.+..||+.+++|+.+|++++.+..+++.++++. +.+++++.++.+++.+++|+.+++.+|...+..+||
T Consensus         1 ~~~l~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ll~~a~k~~~~~~~l~~~L~~lgl   79 (178)
T PF07258_consen    1 ISLLSKLSSEKFKQLCKRAIDFLLGGDNESEISKLAEDLQLSE-EELKQLVAALSYLLREAAKYDLSEEDLRQELEQLGL   79 (178)
T ss_dssp             -THHHHT---SSS--SS--HHHHHHHH-SS----------S-S-STHHHHHTTTSTTHHHHTTT---TTTSTTTHHHTT-
T ss_pred             CCchhhCCHHHHHHHHHHHHHHHccCCCcccccchhhcccCCH-HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence            4678899999999999999999999999889999999999999 999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHhHHHHhhhhhh--------------heecccccccccCceEEEEEeecCCCcccccceeec
Q psy5629          93 TQDDKCEKILYEFYTQEKYNLYRTLISEYI--------------SVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEM  158 (203)
Q Consensus        93 ~ee~~~~~vL~q~y~~~r~~I~r~iLs~~~--------------vqiASRsl~~q~~P~vtmkL~l~~~~~~~~~~~LqT  158 (203)
                      |++  +.+.|.++|..++..| +..+....              ++++|++..+...|+++|+|++.++++..+.+.+++
T Consensus        80 ~~e--~~~~l~~~~~~~~~~l-~~~l~~~~~~~~~l~d~~Wrl~~~~~s~~~~~~~~p~~~l~L~~~~~~~~~~~~~~e~  156 (178)
T PF07258_consen   80 PEE--HAEALCKVYEQNREEL-RKALSSTSFSFPHLVDVDWRLDVQVSSSSLAKINEPVVILQLKTQNGNGKEETVTFEL  156 (178)
T ss_dssp             -HH--HHHHHTTTTTTTSSSS-S---------------------------------------------------------
T ss_pred             CHH--HHHHHHHHHHhccHHH-HHHHhcccccccccCCCcEEEEeeecccHhhhccCcEEEEEEEecCCCCcCceEEEEE
Confidence            999  9999999999999999 88777663              899999999999999999999998866666789999


Q ss_pred             ChhHHHHHHHHHHHHHHHhhh
Q psy5629         159 DVRSVLNITQILEEALSHAKL  179 (203)
Q Consensus       159 Dp~~L~hl~~~LE~AL~e~kT  179 (203)
                      |+..|.+|.++|+.|.+++.+
T Consensus       157 ~~~~l~~l~~~L~~a~~~l~~  177 (178)
T PF07258_consen  157 SKEELQDLLNELKDAQKQLDQ  177 (178)
T ss_dssp             ---------------------
T ss_pred             CHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999998764

HCaRG is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals. HCaRG is a nuclear protein potentially involved in the control of cell proliferation [].; PDB: 2H2M_A.

>cd04758 Commd10 COMM_Domain containing protein 10

Probab=99.43  E-value=9.3e-12  Score=104.32  Aligned_cols=165  Identities=14%  Similarity=0.178  Sum_probs=143.5

Q ss_pred             hhhccccCCChHHHHHHHHHHHHHHhcCCch----hhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhhccCChhhhhhh
Q psy5629          11 EHLSVLFQLPPEVIQDFCTLTTNYLKDGPNQ----KLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCNT   86 (203)
Q Consensus        11 ehL~fL~~~~~~vv~efckiAiefl~~G~n~----K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK~~ise~dF~ds   86 (203)
                      +=+..|..+|.+-+..+|...++++.....+    ..-+...+-.+++. ++++..++++.++|-.++|+++++..+..-
T Consensus         3 ~av~~ln~l~~~~f~~ll~~i~~~l~~~~~~~~s~~~~~kl~~~~~~~~-~~l~~vi~~l~~il~~A~k~nl~~~~L~~~   81 (186)
T cd04758           3 EAVSLINSIDTEKFPRLLSRLFQKLHLKAERSFSEEEEEKLQEAFKLLS-QDLKLLLETISFILEQAAYHNLKPSNLQQQ   81 (186)
T ss_pred             hHHHHHhcCCHHHHHHHHHHHHHHhcccccCCccHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            3456789999999999999999999865553    22345556668999 999999999999999999999999999999


Q ss_pred             hhhcCCCChhHHHHHHHHHHHHHHHhHHHHhhhhhh--------------heecccccccccCceEEEEEeecCCCcccc
Q psy5629          87 LYHMGFTQDDKCEKILYEFYTQEKYNLYRTLISEYI--------------SVVATRSHLNQCEPKFTIRLHLENPDEQEK  152 (203)
Q Consensus        87 l~~l~F~ee~~~~~vL~q~y~~~r~~I~r~iLs~~~--------------vqiASRsl~~q~~P~vtmkL~l~~~~~~~~  152 (203)
                      |..+|++++  +...+.+.|..++..+ +..+....              ++++|-.+...-.|.+.|.|.+..+++..+
T Consensus        82 L~~l~l~~e--~~~~~~~~w~~~~~~l-~~~l~~~~l~~~~L~D~~Wrl~~~~sSs~~~~~~~P~~~L~L~~~~~~g~~e  158 (186)
T cd04758          82 LRNILLLED--KASAFVNAWEAEGEDV-LEKLRSRILAPNQLEDVSWRLNLQMSSSTQAKLKSPLAVLELGVTSEDGNLE  158 (186)
T ss_pred             HHHcCCCHH--HHHHHHHHHHHHHHHH-HHHHHhccCCCCccccccceEEEEEccchhhhhcCCcEEEEeecCCCCCCcc
Confidence            999999999  9999999999999999 77765442              899998888888899999999998666666


Q ss_pred             cceeecChhHHHHHHHHHHHHHHHhhh
Q psy5629         153 QIDLEMDVRSVLNITQILEEALSHAKL  179 (203)
Q Consensus       153 ~~~LqTDp~~L~hl~~~LE~AL~e~kT  179 (203)
                      .+.++++-.-|.++..+||+|=++..+
T Consensus       159 ~v~~E~t~~el~~l~~~le~~q~~ld~  185 (186)
T cd04758         159 KINLEFNHEELLEFYNQLESIQEQLDS  185 (186)
T ss_pred             ceEEEEcHHHHHHHHHHHHHHHHHhcc
Confidence            789999999999999999999877654

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04751 Commd3 COMM_Domain containing protein 3

Probab=99.32  E-value=6.1e-12  Score=95.84  Aligned_cols=76  Identities=18%  Similarity=0.296  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHhHHHHhhhhhh--------------heecccccccccCceEEEEEeecCCCcccccceeecChhHHHHH
Q psy5629         101 ILYEFYTQEKYNLYRTLISEYI--------------SVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNI  166 (203)
Q Consensus       101 vL~q~y~~~r~~I~r~iLs~~~--------------vqiASRsl~~q~~P~vtmkL~l~~~~~~~~~~~LqTDp~~L~hl  166 (203)
                      +|.++|.+||+.| |.+|++.+              .+++||+++++..|+++|+|++.++++ .+.+.|+|||..|.||
T Consensus         2 ~l~~~Y~~~r~~l-~~~l~~~~~~~p~l~dv~WRld~~lsS~~l~~~~~p~~~i~L~~~~~~~-~~~i~f~c~~e~L~~L   79 (95)
T cd04751           2 IFAKQYQKKKEVL-ENKLKSIGISFPHITDVNWRLDYVVSSKHLGKVNQPIYLIQLSTENGEN-KPDINFTCTLEQLQDL   79 (95)
T ss_pred             hHHHHHHHhHHHH-HHHHHHhCCCCCceecCceEEEEEEcccccCcccceeEEEEEeccCCCC-cceEEEEeCHHHHHHH
Confidence            6899999999999 99999985              899999999999999999999997666 5577999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy5629         167 TQILEEALSHAK  178 (203)
Q Consensus       167 ~~~LE~AL~e~k  178 (203)
                      +++|++|-+.+.
T Consensus        80 i~~Lk~A~~~~e   91 (95)
T cd04751          80 VNKLKDAAKNIE   91 (95)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988765

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04756 Commd8 COMM_Domain containing protein 8

Probab=99.08  E-value=6.8e-09  Score=87.04  Aligned_cols=156  Identities=15%  Similarity=0.163  Sum_probs=133.0

Q ss_pred             hhccccCCChHHHHHHHHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhhccCChhhhhhhhhhcC
Q psy5629          12 HLSVLFQLPPEVIQDFCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTLYHMG   91 (203)
Q Consensus        12 hL~fL~~~~~~vv~efckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK~~ise~dF~dsl~~l~   91 (203)
                      |+-++..+|+.-+..+|--.++.|-.+.-++ |.-+..  .|+. +++.+.++++.+++..++|+++++..-...|.  |
T Consensus         2 ~~~~i~~l~~~~~~~Ll~~vv~~l~~~~~~~-~~~~~~--~~s~-~e~~~~l~~l~~i~~~a~~~~l~~~~l~~~L~--~   75 (176)
T cd04756           2 PPELINLLPVAQIVKLLHRVVDGVCGRAYPR-YQDYSA--IWSL-EEWTEVLESLATLFKQAVGKNSNDEEAKAQLS--D   75 (176)
T ss_pred             hhhhhhcCCHHHHHHHHHHHHHHHhcccCCc-hhhhcc--cCCH-HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHh--c
Confidence            5567788999999999999999997655544 333332  8889 99999999999999999999999999988775  8


Q ss_pred             CCChhHHHHHHHHHHHHHHHhHHHHhhhhh----------------hheecccccccccCceEEEEEeecCCCcccccce
Q psy5629          92 FTQDDKCEKILYEFYTQEKYNLYRTLISEY----------------ISVVATRSHLNQCEPKFTIRLHLENPDEQEKQID  155 (203)
Q Consensus        92 F~ee~~~~~vL~q~y~~~r~~I~r~iLs~~----------------~vqiASRsl~~q~~P~vtmkL~l~~~~~~~~~~~  155 (203)
                      ++.+  +.+.+.+.|..++.+| +..|.+.                ...+||=++.+.-.|.++|+|.+. +++..+.+.
T Consensus        76 L~~~--~~~a~~~~~~~~~~ei-~~~L~~~~~~is~~~L~d~dWrv~l~lSSd~~~~l~~P~~~L~L~v~-~~~~~~~v~  151 (176)
T cd04756          76 LSSS--HQEALLKCVKSRKEEI-RQALVNKTNSISSAQLQDFDWQLKLALSSDKLSSLQEPLLNLDLDVK-ENGILKPVS  151 (176)
T ss_pred             CCHH--HHHHHHHHHHHhhHHH-HHHHHHHHhccCchhhccccCeeeeeechhhHHHhcCCeEEEEEEec-CCCCeeEEE
Confidence            9999  9999999999999999 8877422                178888889999999999999999 555556789


Q ss_pred             eecChhHHHHHHHHHHHHHHHh
Q psy5629         156 LEMDVRSVLNITQILEEALSHA  177 (203)
Q Consensus       156 LqTDp~~L~hl~~~LE~AL~e~  177 (203)
                      ++.+-..|..|+.+||+|=+-|
T Consensus       152 ~Ems~eel~~li~~Le~a~~~~  173 (176)
T cd04756         152 IEMNKEELQNLISSLEAANKVV  173 (176)
T ss_pred             EEEcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999996543

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04755 Commd7 COMM_Domain containing protein 7

Probab=99.04  E-value=2.2e-08  Score=84.67  Aligned_cols=160  Identities=10%  Similarity=0.140  Sum_probs=133.8

Q ss_pred             ccccCCChHHHHHHHHHHHHHHhcCCc-hh---hHHHHHhhcCCCchHHHHHHHHHHHHHHHHHhhccCChhhhhhhhhh
Q psy5629          14 SVLFQLPPEVIQDFCTLTTNYLKDGPN-QK---LYKSVSKKLSLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTLYH   89 (203)
Q Consensus        14 ~fL~~~~~~vv~efckiAiefl~~G~n-~K---~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~essK~~ise~dF~dsl~~   89 (203)
                      +-++.++++-+.++|-+.+.||.--.. ..   ..+..|...+++. .+++..|++|.+++..++|+++++.....-+..
T Consensus         2 ~~in~l~~~~f~~l~~~i~~~L~~~k~~~~~~~~~~ef~~~~~~~~-~dlk~vi~~l~fi~~~A~k~nv~~~~L~~eL~~   80 (180)
T cd04755           2 QNLNQLSEQQFSRLTEILFEFLLEPKESERLLNQLDEFAGENGISL-GPLKNIVKSILLVPNGALKRNLTAEQLREDLIQ   80 (180)
T ss_pred             CccccCCHHHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            347789999999999999999994333 22   2345677889999 999999999999999999999999999999999


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHhHHHHhhhhh--------------hheecccccccccCceEEEEEeecCCCcccccce
Q psy5629          90 MGFTQDDKCEKILYEFYTQEKYNLYRTLISEY--------------ISVVATRSHLNQCEPKFTIRLHLENPDEQEKQID  155 (203)
Q Consensus        90 l~F~ee~~~~~vL~q~y~~~r~~I~r~iLs~~--------------~vqiASRsl~~q~~P~vtmkL~l~~~~~~~~~~~  155 (203)
                      +|.|++  +...+.+.|.++...+ +..+..-              .+++||=.+++-=.|.+.|||...+++. .+.++
T Consensus        81 lgL~~e--ka~~~~~~w~~~~~~L-~~~~~~~tL~~~qL~d~~Wr~~~~~sSS~~~~~~~p~vqLkl~~~~~~~-~e~v~  156 (180)
T cd04755          81 LGLSEE--KASYFSEQWKQHYSTL-SRSAVGQTLMVNQLVDMEWKFGVTAGSSELQKVGSIFLQLKLVVRKGNQ-TENVY  156 (180)
T ss_pred             cCCCHH--HHHHHHHHHHHhHHHH-HHHHHHcccCccccccccceeeeEecchhhhhcCCcEEEEEEEecCCCC-ceeEE
Confidence            999999  9999999999999999 5554333              2888886666656699999999864433 34668


Q ss_pred             eecChhHHHHHHHHHHHHHHHhh
Q psy5629         156 LEMDVRSVLNITQILEEALSHAK  178 (203)
Q Consensus       156 LqTDp~~L~hl~~~LE~AL~e~k  178 (203)
                      ++...+-+..+..+||+|=+.|.
T Consensus       157 ~E~t~~qF~~f~~elk~a~a~me  179 (180)
T cd04755         157 MELTLPQFYSFLHEMERAKASLE  179 (180)
T ss_pred             EEEcHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999976653

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04753 Commd5_HCaRG COMM_Domain containing protein 5, also called HCaRG (hypertension-related, calcium-regulated gene)

Probab=98.94  E-value=4.7e-09  Score=82.42  Aligned_cols=91  Identities=13%  Similarity=0.117  Sum_probs=78.8

Q ss_pred             hcCCCChhHHHHHHH-HHHHHHHHhHHHHhhhhhh--------------heecccccccccCceEEEEEeecCCCccccc
Q psy5629          89 HMGFTQDDKCEKILY-EFYTQEKYNLYRTLISEYI--------------SVVATRSHLNQCEPKFTIRLHLENPDEQEKQ  153 (203)
Q Consensus        89 ~l~F~ee~~~~~vL~-q~y~~~r~~I~r~iLs~~~--------------vqiASRsl~~q~~P~vtmkL~l~~~~~~~~~  153 (203)
                      .+|||+|  +.+.|+ ++|..+|..+ ++++.+..              |.+|||++.++.+|.|+|+|++++++    .
T Consensus         1 ~l~lp~E--~~~dL~~~~y~~~r~~l-~~~l~~~~~rlp~l~~l~WRVDv~lSSs~l~~~~~PtI~LkLkl~dg~----~   73 (110)
T cd04753           1 ELRIPEE--LITDLASVVYGQRRPLL-ESGALQKGVRLPHLEDFKWRVDVAISTSSLSRVLQPSILMEMKLSDGK----S   73 (110)
T ss_pred             CCCCCHH--HHHHHHHHHHhccHHHH-HHHHHHhccCCcccccCcceEEEEEchhhhhcccCCeEEEEEEecCCC----e
Confidence            3899999  999996 9999999999 88877763              99999999999999999999996443    4


Q ss_pred             ceeecChhHHHHHHHHHHHHHHHhhhhh-hhhHh
Q psy5629         154 IDLEMDVRSVLNITQILEEALSHAKLNQ-RKMSR  186 (203)
Q Consensus       154 ~~LqTDp~~L~hl~~~LE~AL~e~kT~h-RrI~R  186 (203)
                      +.+++..+..-.+.--.-..|+||..-. |.|.+
T Consensus        74 ~~fe~~~~kF~~Lry~~a~~l~em~~le~~~~~~  107 (110)
T cd04753          74 HRFEVPVAKFHELRYNVALILKEMNDLEKRSILK  107 (110)
T ss_pred             EEEEeeHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            4889999998888888888999998888 66654

HCaRG is a nuclear protein that might be involved in cell proliferation; it is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04748 Commd COMM_Domain, a family of domains found at the C-terminus of HCarG, the copper metabolism gene MURR1 product, and related proteins

Probab=98.82  E-value=9.5e-09  Score=76.28  Aligned_cols=71  Identities=20%  Similarity=0.302  Sum_probs=63.5

Q ss_pred             HHHHHHHhHHHHhhhhhh--------------heecccccccccCceEEEEEeecCCCc-ccccceeecChhHHHHHHHH
Q psy5629         105 FYTQEKYNLYRTLISEYI--------------SVVATRSHLNQCEPKFTIRLHLENPDE-QEKQIDLEMDVRSVLNITQI  169 (203)
Q Consensus       105 ~y~~~r~~I~r~iLs~~~--------------vqiASRsl~~q~~P~vtmkL~l~~~~~-~~~~~~LqTDp~~L~hl~~~  169 (203)
                      +|.++|..| |.+|.+..              +++||+++.+.-.|.++|.|++..+++ ..+.+.+++|+..|.+++++
T Consensus         1 ~~~~~~~~i-~~~l~~~s~~~~~L~d~~Wrld~~~sS~~~~~~~~P~~~~~L~l~~~~~~~~~~v~~E~~~~~l~~l~~~   79 (87)
T cd04748           1 LLTENKAEI-EELLSKQSLSLPQLVDFDWRLDVQISSSSLAKVKQPTILVQLKLQVGDNNSSEKICFEMTKEELQNFLNK   79 (87)
T ss_pred             ChhhHHHHH-HHHHHHhccCCCeeeeeeeEEEEEEchhHHHHhhCCeEEEEEEEecCCCCccceEEEEeCHHHHHHHHHH
Confidence            488999999 99998884              999999999999999999999997654 45568999999999999999


Q ss_pred             HHHHHHH
Q psy5629         170 LEEALSH  176 (203)
Q Consensus       170 LE~AL~e  176 (203)
                      ||+|.++
T Consensus        80 L~~a~~~   86 (87)
T cd04748          80 LKKIKAQ   86 (87)
T ss_pred             HHHHHhc
Confidence            9999865

Presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB. Murr1/Commd1 is a protein involved in copper homeostasis, which has also been identified as a regulator of the human delta epithelial sodium channel. HCaRG, a nuclear protein that might be involved in cell proliferation, is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals.

>cd04757 Commd9 COMM_Domain containing protein 9

Probab=98.74  E-value=3e-08  Score=77.92  Aligned_cols=78  Identities=12%  Similarity=0.185  Sum_probs=68.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHhHHHHhhhhhh--------------heecccccccccCceEEEEEeecCCCc------cc
Q psy5629          92 FTQDDKCEKILYEFYTQEKYNLYRTLISEYI--------------SVVATRSHLNQCEPKFTIRLHLENPDE------QE  151 (203)
Q Consensus        92 F~ee~~~~~vL~q~y~~~r~~I~r~iLs~~~--------------vqiASRsl~~q~~P~vtmkL~l~~~~~------~~  151 (203)
                      |..+  +.++|+++|.+||+++ |+++++..              +++|||++.++..|++.|.|.+.+++.      ..
T Consensus         1 f~~~--l~~lL~~~~le~r~~~-r~~~~~~~~slp~l~dldWRldv~isS~sl~r~~~P~vll~lkv~~~~~~~~~~~~~   77 (108)
T cd04757           1 FHSN--LKNLLTKIILENRDKW-RSEASENQISLPKLVDHDWRVDIKTSSDSLGRMAVPTCLLQMKIQEAPSLCGLLPPL   77 (108)
T ss_pred             CCHH--HHHHHHHHHHHhhHHH-HHHHHhcCCCchhhhCccceehhHHHHHHHHhhhcCeEEEEEEeecCccccccCCCc
Confidence            6677  9999999999999999 99998883              999999999999999999999987643      13


Q ss_pred             ccceeecChhHHHHHHHHHHH
Q psy5629         152 KQIDLEMDVRSVLNITQILEE  172 (203)
Q Consensus       152 ~~~~LqTDp~~L~hl~~~LE~  172 (203)
                      +.+.+|.+-.+|-.|.+-|+.
T Consensus        78 ~~v~~ELsKe~l~tml~~L~~   98 (108)
T cd04757          78 STLTMELSKETLDTMLDGLGR   98 (108)
T ss_pred             ceEEEEcCHHHHHHHHHHHHH
Confidence            457899999999999988875

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>cd04749 Commd1_MURR1 COMM_Domain containing protein 1, also called Murr1

Probab=98.57  E-value=1.2e-06  Score=73.97  Aligned_cols=123  Identities=15%  Similarity=0.137  Sum_probs=110.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhccCChhhhhhhh-----hhcCCCChhHHHHHHHHHHHHHHHhHHHHhhhhhh----
Q psy5629          52 SLPSADNVQDSVEGLVYFLLLATILNISEYDFCNTL-----YHMGFTQDDKCEKILYEFYTQEKYNLYRTLISEYI----  122 (203)
Q Consensus        52 ~v~~~~~Vq~~Ve~L~~Ll~essK~~ise~dF~dsl-----~~l~F~ee~~~~~vL~q~y~~~r~~I~r~iLs~~~----  122 (203)
                      ++++ +.+...+.++.+++..++|+......+..-|     ..+|.|.+  +.+.+..||..||..| |.+|-+-+    
T Consensus        31 ~~~~-ed~ka~~ak~~~ii~saa~~dvD~~~L~~~Lt~q~~qQ~Gl~~e--ha~~l~Kfwk~~~~kl-r~~l~~~S~~~~  106 (174)
T cd04749          31 EDPL-EEFRALHNKMRGLLKSIASADMDINQLEAFLTAQTKKQGGITSL--QAAVIAKFWKVHKKKI-RESLLAQSRWEN  106 (174)
T ss_pred             CCCH-HHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHhcCCChH--HHHHHHHHHHHhHHHH-HHHHHHHhhhcc
Confidence            6778 9999999999999999999999999999988     78999999  9999999999999999 98877663    


Q ss_pred             ----------heecccccccccCceEEEEEeecCCCcccccceeecChhHHHHHHHHHHHHHHHhh
Q psy5629         123 ----------SVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILEEALSHAK  178 (203)
Q Consensus       123 ----------vqiASRsl~~q~~P~vtmkL~l~~~~~~~~~~~LqTDp~~L~hl~~~LE~AL~e~k  178 (203)
                                ...+|+.+.+.-.|++.++|.+..++.....+.++.|-..+.-|..+|.+|=..|.
T Consensus       107 ~L~~l~WRVD~~tsS~~~~evn~P~~~l~L~v~~~~~~~~~v~~emd~ek~~~lL~eLk~iq~~m~  172 (174)
T cd04749         107 SLRGLSWRVDLKTQSRHIAQINSPVAIVELELGKTGQESEFVCLEFDEAKVNRVLKQLAEIQESLD  172 (174)
T ss_pred             cccCCCCeeeeecccchhhhccCCeEEEEEeeccCCCCCceEEEEecHHHHHHHHHHHHHHHHHHh
Confidence                      77889999999999999999998766555578999999999999999998866553

Murr1/Commd1 is a protein involved in copper homeostasis, which has also been identified as a regulator of the human delta epithelial sodium channel. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []

Probab=86.76  E-value=1.6  Score=28.81  Aligned_cols=37  Identities=16%  Similarity=0.273  Sum_probs=28.2

Q ss_pred             HHHHHHHHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHH
Q psy5629          27 FCTLTTNYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGL   66 (203)
Q Consensus        27 fckiAiefl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L   66 (203)
                      =...|++.+.+|.  ..+..||+++|||. .++.+-+.|.
T Consensus         4 ~l~~Ai~~v~~g~--~S~r~AA~~ygVp~-sTL~~r~~g~   40 (45)
T PF05225_consen    4 DLQKAIEAVKNGK--MSIRKAAKKYGVPR-STLRRRLRGK   40 (45)
T ss_dssp             HHHHHHHHHHTTS--S-HHHHHHHHT--H-HHHHHHHHHT
T ss_pred             HHHHHHHHHHhCC--CCHHHHHHHHCcCH-HHHHHHHcCC
Confidence            3567999999887  66789999999999 9998877663

In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.

>cd04754 Commd6 COMM_Domain containing protein 6

Probab=82.20  E-value=3.8  Score=31.30  Aligned_cols=53  Identities=17%  Similarity=0.287  Sum_probs=45.4

Q ss_pred             heecccccccccCceEEEEEeecCCCcccccceeecChhHHHHHHHHHHHHHH
Q psy5629         123 SVVATRSHLNQCEPKFTIRLHLENPDEQEKQIDLEMDVRSVLNITQILEEALS  175 (203)
Q Consensus       123 vqiASRsl~~q~~P~vtmkL~l~~~~~~~~~~~LqTDp~~L~hl~~~LE~AL~  175 (203)
                      +-++|=.+++-=.|.++++|.+..+.+..+...++...+-+..++.+.|+|=+
T Consensus        31 va~sSd~~~sl~~Pfl~l~L~V~~~~G~~~~~~~EmTlpEFq~f~~~~~~~~a   83 (86)
T cd04754          31 MAVSSDTCRSLNSPYVAVTLKVADPSGQVVTKSFEMTIPEFQNFSRQFKEMAA   83 (86)
T ss_pred             EEEechhhhhcCCceEEEEEEEEccCCCccceEEEEcHHHHHHHHHHHHHHHH
Confidence            77888888888899999999999855555556999999999999999998743

The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 45/248 (18%), Positives = 82/248 (33%), Gaps = 70/248 (28%)

Query: 8   SHREHLSVL--------FQLPPEVIQDF---CTLTTNYLKDGPNQ-KLYKSV-SKKLS-- 52
           +  E  S+L          LP EV+       ++    ++DG      +K V   KL+  
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 53  LPSADNVQDSVEGLVYFLLLA-------------TIL--NISEYD---FCNTLYHMGFTQ 94
           + S+ NV +  E    F  L+             +++  ++ + D     N L+     +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 95  DDKCEKI--LYEFY------TQEKYNLYRTLISEYISVVATRSHLNQCEPKFT------- 139
               E    +   Y       + +Y L+R+++  Y   +      +   P +        
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLDQYFYSH 476

Query: 140 IRLHLENPDEQEKQIDLEM---DVR-----------------SVLNITQILEEALSHAKL 179
           I  HL+N +  E+     M   D R                 S+LN  Q L+    +   
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 180 NQRKMSRR 187
           N  K  R 
Sbjct: 537 NDPKYERL 544

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	80.79
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	80.3

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=80.79  E-value=2.6  Score=31.59  Aligned_cols=41  Identities=15%  Similarity=0.233  Sum_probs=36.3

Q ss_pred             HHHhcCCchhhHHHHHhhc-CCCchHHHHHHHHHHHHHHHHHh
Q psy5629          33 NYLKDGPNQKLYKSVSKKL-SLPSADNVQDSVEGLVYFLLLAT   74 (203)
Q Consensus        33 efl~~G~n~K~y~~aA~KL-~v~~~~~Vq~~Ve~L~~Ll~ess   74 (203)
                      ++=.+|++++.|..+|++| |.++ +.|.+=+.-||.||--++
T Consensus        47 ~cQ~~G~s~~tFa~iA~~L~Nks~-nqV~~RFq~Lm~Lf~~~~   88 (95)
T 1ug2_A           47 MCQEQGAQPHTFSVISQQLGNKTP-VEVSHRFRELMQLFHTAC   88 (95)
T ss_dssp             HHHHTTSCTTTHHHHHHHHSSCCH-HHHHHHHHHHHHHHHHCS
T ss_pred             HHHhcCCChhHHHHHHHHHccCCH-HHHHHHHHHHHHHHHHHh
Confidence            4456899999999999999 6999 999999999999987644

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=80.30  E-value=0.4  Score=34.25  Aligned_cols=39  Identities=21%  Similarity=0.358  Sum_probs=34.7

Q ss_pred             HHHhcCCchhhHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Q psy5629          33 NYLKDGPNQKLYKSVSKKLSLPSADNVQDSVEGLVYFLLL   72 (203)
Q Consensus        33 efl~~G~n~K~y~~aA~KL~v~~~~~Vq~~Ve~L~~Ll~e   72 (203)
                      ++=.+|++++.|..+|++||=++ +.|.+=+..||.|+--
T Consensus        28 ~cq~~G~s~~tfa~iA~~Lnks~-~QV~~RF~~Lm~Lf~k   66 (70)
T 2lr8_A           28 ECQKRGPSSKTFAYLAAKLDKNP-NQVSERFQQLMKLFEK   66 (70)
Confidence            44468999999999999999999 9999999999998743

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00