Psyllid ID: psy5634

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDNYD
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHccEEEEc
Coil and Loop (DISEMBL)
meissrggqqRRVSFAVALmhdpellildeptvgvdplLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAhtvidnyd
Flexible Loop (DISEMBL)
meissrggqqrRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIeearqahtvidnyd
Low Complexity Region (SEG)
MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDNYD
Disordered region (IsUnstruct)
************VSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI****
Disordered Region (DISOPRED)
***SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDNYD
Disordered Region (DISEMBL)
***********RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDNYD
Disordered Region (DISPRO)
****SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDNYD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDNYD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	79	2.2.26 [Sep-21-2011]
Q55EH8	701	ABC transporter G family	yes	N/A	0.860	0.097	0.602	5e-19
Q8T674	730	ABC transporter G family	no	N/A	0.835	0.090	0.547	5e-15
P36879	308	Uncharacterized ABC trans	N/A	N/A	0.772	0.198	0.580	5e-14
O07016	301	Uncharacterized ABC trans	yes	N/A	0.810	0.212	0.538	3e-13
P55476	343	Nod factor export ATP-bin	yes	N/A	0.772	0.177	0.548	4e-13
Q46YX6	325	Nod factor export ATP-bin	yes	N/A	0.797	0.193	0.5	6e-13
Q84K47	983	ABC transporter A family	yes	N/A	0.797	0.064	0.507	6e-13
Q8KLG1	316	Nod factor export ATP-bin	yes	N/A	0.797	0.199	0.5	6e-13
Q9FKF2	953	ABC transporter A family	no	N/A	0.797	0.066	0.507	7e-13
Q9FLT5	950	ABC transporter A family	no	N/A	0.797	0.066	0.492	9e-13

>sp|Q55EH8|ABCGN_DICDI ABC transporter G family member 23 OS=Dictyostelium discoideum GN=abcG23 PE=3 SV=2

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/68 (60%), Positives = 51/68 (75%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQRRVS A AL+H P+LLILDEPTVGV PL+   IW HL+ +TK+   T+IITTHY++
Sbjct: 140 GGQQRRVSLATALIHSPKLLILDEPTVGVCPLVSSKIWEHLIFLTKNFGVTIIITTHYLQ 199

Query: 67  EARQAHTV 74
           E R    +
Sbjct: 200 ECRSCDNI 207

Dictyostelium discoideum (taxid: 44689)

>sp|Q8T674|ABCGK_DICDI ABC transporter G family member 20 OS=Dictyostelium discoideum GN=abcG20 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 7/73 (9%)

Query: 2   EISSR------GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGN 55
           +I+SR      GGQ++RVS AVAL+H P+LLILDEPTVG+D  +  +IW++L  +   G 
Sbjct: 137 QINSRSVGLLSGGQKKRVSLAVALLHSPKLLILDEPTVGIDMEVASNIWSYLRSLANSG- 195

Query: 56  KTVIITTHYIEEA 68
            T+IITTHYI EA
Sbjct: 196 VTIIITTHYINEA 208

Dictyostelium discoideum (taxid: 44689)

>sp|P36879|YADG_ECOLI Uncharacterized ABC transporter ATP-binding protein YadG OS=Escherichia coli (strain K12) GN=yadG PE=3 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG +RR+  A ALMH+P+LLILDEPT GVD  LR+S+W  L  +   G  T+I+TTHY+E
Sbjct: 139 GGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGT-TIILTTHYLE 197

Query: 67  EA 68
           EA
Sbjct: 198 EA 199

Escherichia coli (strain K12) (taxid: 83333)

>sp|O07016|YVFR_BACSU Uncharacterized ABC transporter ATP-binding protein YvfR OS=Bacillus subtilis (strain 168) GN=yvfR PE=3 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 47/65 (72%), Gaps = 1/65 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ+RR+SFA+AL  +PELLILDEPTVG+D   R   W  +  ++  G KT+I +THY++
Sbjct: 133 GGQKRRLSFALALAGNPELLILDEPTVGMDTSSRHRFWQTIHGLSDQG-KTIIFSTHYLQ 191

Query: 67  EARQA 71
           EA  A
Sbjct: 192 EADDA 196

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|P55476|NODI_RHISN Nod factor export ATP-binding protein I OS=Rhizobium sp. (strain NGR234) GN=nodI PE=3 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG QRR++ A AL++DP+LLILDEPT G+DP  R  IW  L  +   G KT+++TTH++E
Sbjct: 178 GGMQRRLTLACALINDPQLLILDEPTTGLDPHARHLIWERLRSLLALG-KTILLTTHFME 236

Query: 67  EA 68
           EA
Sbjct: 237 EA 238

Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.

Rhizobium sp. (strain NGR234) (taxid: 394)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q46YX6|NODI_CUPPJ Nod factor export ATP-binding protein I OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=nodI PE=3 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG +RR++ A AL++DP+LLI+DEPT G+DP  R  IW  L  +   G KT+++TTH++E
Sbjct: 160 GGMRRRLTVARALINDPDLLIMDEPTTGLDPQARHLIWERLKSLMASG-KTILLTTHFME 218

Query: 67  EARQ 70
           EA +
Sbjct: 219 EAER 222

Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.

Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q84K47|AB2A_ARATH ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 50/65 (76%), Gaps = 2/65 (3%)

Query: 4   SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           S  GG +RR+S AV+L+ DP+L+ LDEPT G+DP+ R+ +W+ ++Q TK G + +I+TTH
Sbjct: 664 SYSGGMKRRLSVAVSLIGDPKLVFLDEPTTGMDPITRRHVWD-IIQETKKG-RAIILTTH 721

Query: 64  YIEEA 68
            +EEA
Sbjct: 722 SMEEA 726

Arabidopsis thaliana (taxid: 3702)

>sp|Q8KLG1|NODI_RHIEC Nod factor export ATP-binding protein I OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=nodI PE=3 SV=3

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG +RR++ A AL++DP+LL++DEPT G+DP  R  IW  L  +   G KT+I+TTH++E
Sbjct: 151 GGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERLRSLLTRG-KTIILTTHFME 209

Query: 67  EARQ 70
           EA +
Sbjct: 210 EAER 213

Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.

Rhizobium etli (strain CFN 42 / ATCC 51251) (taxid: 347834)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

>sp|Q9FKF2|AB11A_ARATH ABC transporter A family member 11 OS=Arabidopsis thaliana GN=ABCA11 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 50/65 (76%), Gaps = 2/65 (3%)

Query: 4   SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           S  GG +RR+S AVAL+ DP+L+ LDEPT G+DP+ R+ +W+ ++Q +K G + +I+TTH
Sbjct: 665 SYSGGMKRRLSVAVALIGDPKLVFLDEPTTGMDPITRRHVWD-IIQESKKG-RAIILTTH 722

Query: 64  YIEEA 68
            +EEA
Sbjct: 723 SMEEA 727

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLT5|AB9A_ARATH ABC transporter A family member 9 OS=Arabidopsis thaliana GN=ABCA9 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 50/65 (76%), Gaps = 2/65 (3%)

Query: 4   SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           S  GG +RR+S A+AL+ DP+L+ LDEPT G+DP+ R+ +W+ ++Q +K G + +I+TTH
Sbjct: 666 SYSGGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWD-IIQESKKG-RAIILTTH 723

Query: 64  YIEEA 68
            +EEA
Sbjct: 724 SMEEA 728

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
383851824	759	PREDICTED: ABC transporter G family memb	0.860	0.089	0.985	6e-34
332027462	763	ABC transporter G family member 20 [Acro	0.860	0.089	0.985	6e-34
322789827	809	hypothetical protein SINV_01380 [Solenop	0.860	0.084	0.985	6e-34
307196735	760	ABC transporter G family member 20 [Harp	0.860	0.089	0.985	6e-34
270013184	767	hypothetical protein TcasGA2_TC011755 [T	0.860	0.088	0.985	6e-34
91090998	792	PREDICTED: similar to AGAP003680-PA [Tri	0.860	0.085	0.985	6e-34
345496012	768	PREDICTED: ABC transporter G family memb	0.860	0.088	0.985	6e-34
328783515	788	PREDICTED: ABC transporter G family memb	0.860	0.086	0.985	1e-33
380024619	799	PREDICTED: ABC transporter G family memb	0.860	0.085	0.985	1e-33
328718628	781	PREDICTED: ABC transporter G family memb	0.860	0.087	0.970	3e-33

>gi|383851824|ref|XP_003701431.1| PREDICTED: ABC transporter G family member 23-like [Megachile rotundata]

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/68 (98%), Positives = 68/68 (100%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE
Sbjct: 162 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 221

Query: 67  EARQAHTV 74
           EARQAHT+
Sbjct: 222 EARQAHTI 229

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027462|gb|EGI67545.1| ABC transporter G family member 20 [Acromyrmex echinatior]

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/68 (98%), Positives = 68/68 (100%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE
Sbjct: 166 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 225

Query: 67  EARQAHTV 74
           EARQAHT+
Sbjct: 226 EARQAHTI 233

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789827|gb|EFZ14974.1| hypothetical protein SINV_01380 [Solenopsis invicta]

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/68 (98%), Positives = 68/68 (100%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE
Sbjct: 212 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 271

Query: 67  EARQAHTV 74
           EARQAHT+
Sbjct: 272 EARQAHTI 279

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196735|gb|EFN78194.1| ABC transporter G family member 20 [Harpegnathos saltator]

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/68 (98%), Positives = 68/68 (100%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE
Sbjct: 161 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 220

Query: 67  EARQAHTV 74
           EARQAHT+
Sbjct: 221 EARQAHTI 228

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013184|gb|EFA09632.1| hypothetical protein TcasGA2_TC011755 [Tribolium castaneum]

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/68 (98%), Positives = 68/68 (100%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE
Sbjct: 178 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 237

Query: 67  EARQAHTV 74
           EARQAHT+
Sbjct: 238 EARQAHTI 245

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090998|ref|XP_974932.1| PREDICTED: similar to AGAP003680-PA [Tribolium castaneum]

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/68 (98%), Positives = 68/68 (100%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE
Sbjct: 201 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 260

Query: 67  EARQAHTV 74
           EARQAHT+
Sbjct: 261 EARQAHTI 268

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496012|ref|XP_001604973.2| PREDICTED: ABC transporter G family member 20-like isoform 1 [Nasonia vitripennis] gi|345496014|ref|XP_003427623.1| PREDICTED: ABC transporter G family member 20-like isoform 2 [Nasonia vitripennis]

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/68 (98%), Positives = 68/68 (100%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE
Sbjct: 173 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 232

Query: 67  EARQAHTV 74
           EARQAHT+
Sbjct: 233 EARQAHTI 240

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783515|ref|XP_393164.4| PREDICTED: ABC transporter G family member 20-like isoform 1 [Apis mellifera]

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/68 (98%), Positives = 68/68 (100%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE
Sbjct: 204 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 263

Query: 67  EARQAHTV 74
           EARQAHT+
Sbjct: 264 EARQAHTI 271

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024619|ref|XP_003696091.1| PREDICTED: ABC transporter G family member 20-like [Apis florea]

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/68 (98%), Positives = 68/68 (100%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE
Sbjct: 204 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 263

Query: 67  EARQAHTV 74
           EARQAHT+
Sbjct: 264 EARQAHTI 271

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328718628|ref|XP_003246532.1| PREDICTED: ABC transporter G family member 20-like isoform 2 [Acyrthosiphon pisum] gi|328718630|ref|XP_003246533.1| PREDICTED: ABC transporter G family member 20-like isoform 3 [Acyrthosiphon pisum]

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG+KTVIITTHYIE
Sbjct: 196 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGHKTVIITTHYIE 255

Query: 67  EARQAHTV 74
           EARQAHT+
Sbjct: 256 EARQAHTI 263

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
FB|FBgn0039594	808	CG9990 [Drosophila melanogaste	0.860	0.084	0.941	6.7e-29
FB|FBgn0053970	777	CG33970 [Drosophila melanogast	0.860	0.087	0.794	2e-24
FB|FBgn0031734	711	CG11147 [Drosophila melanogast	0.860	0.095	0.676	9.8e-21
ZFIN|ZDB-GENE-050517-42	705	abch1 "ATP-binding cassette, s	0.860	0.096	0.691	2e-20
DICTYBASE|DDB_G0269026	701	abcG23 "ABC transporter G fami	0.860	0.097	0.602	2.6e-17
TIGR_CMR|BA_2541	222	BA_2541 "ABC transporter, ATP-	0.772	0.274	0.564	3.7e-16
TIGR_CMR|SO_3802	312	SO_3802 "ABC transporter, ATP-	0.772	0.195	0.612	6.7e-15
UNIPROTKB|Q9KUD3	305	VC_0589 "ABC transporter, ATP-	0.772	0.2	0.612	7.6e-15
TIGR_CMR|VC_0589	305	VC_0589 "ABC transporter, ATP-	0.772	0.2	0.612	7.6e-15
TIGR_CMR|CPS_1066	293	CPS_1066 "ABC transporter, ATP	0.797	0.215	0.5	2.3e-14

FB|FBgn0039594 CG9990 [Drosophila melanogaster (taxid:7227)]

 Score = 331 (121.6 bits), Expect = 6.7e-29, P = 6.7e-29
 Identities = 64/68 (94%), Positives = 65/68 (95%)

Query:     7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
             GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLV ITK G KTVIITTHYIE
Sbjct:   211 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVHITKAGQKTVIITTHYIE 270

Query:    67 EARQAHTV 74
             EARQAHT+
Sbjct:   271 EARQAHTI 278

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0053970 CG33970 [Drosophila melanogaster (taxid:7227)]

 Score = 289 (106.8 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 54/68 (79%), Positives = 62/68 (91%)

Query:     7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
             GGQQRRVS AVAL+H+PELLILDEPTVGVDP+LRQSIW+HLV ITK+G+ TVIITTHYI+
Sbjct:   185 GGQQRRVSLAVALLHEPELLILDEPTVGVDPVLRQSIWDHLVDITKNGHTTVIITTHYID 244

Query:    67 EARQAHTV 74
             E  QAH +
Sbjct:   245 ECAQAHMI 252

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

FB|FBgn0031734 CG11147 [Drosophila melanogaster (taxid:7227)]

 Score = 254 (94.5 bits), Expect = 9.8e-21, P = 9.8e-21
 Identities = 46/68 (67%), Positives = 59/68 (86%)

Query:     7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
             GGQQRR+SFA A++HDPELLILDEPTVG+DP+LR+ IW+ LV+ T++    VIITTHYIE
Sbjct:   141 GGQQRRLSFACAMIHDPELLILDEPTVGLDPMLREKIWDFLVETTRNSKLAVIITTHYIE 200

Query:    67 EARQAHTV 74
             EA+QA+ +
Sbjct:   201 EAKQANCI 208

GO:0005215 "transporter activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-050517-42 abch1 "ATP-binding cassette, sub-family H, member 1" [Danio rerio (taxid:7955)]

 Score = 251 (93.4 bits), Expect = 2.0e-20, P = 2.0e-20
 Identities = 47/68 (69%), Positives = 57/68 (83%)

Query:     7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
             GGQ+RRVS   AL+ +P+LLILDEPTVGVDP+LR  IW HLV+I + G  ++IITTHYIE
Sbjct:   153 GGQRRRVSLGAALLQNPKLLILDEPTVGVDPVLRAKIWQHLVEIVRGGQVSIIITTHYIE 212

Query:    67 EARQAHTV 74
             EARQA+TV
Sbjct:   213 EARQANTV 220

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

DICTYBASE|DDB_G0269026 abcG23 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 222 (83.2 bits), Expect = 2.6e-17, P = 2.6e-17
 Identities = 41/68 (60%), Positives = 51/68 (75%)

Query:     7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
             GGQQRRVS A AL+H P+LLILDEPTVGV PL+   IW HL+ +TK+   T+IITTHY++
Sbjct:   140 GGQQRRVSLATALIHSPKLLILDEPTVGVCPLVSSKIWEHLIFLTKNFGVTIIITTHYLQ 199

Query:    67 EARQAHTV 74
             E R    +
Sbjct:   200 ECRSCDNI 207

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

TIGR_CMR|BA_2541 BA_2541 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 35/62 (56%), Positives = 50/62 (80%)

Query:     7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
             GG ++R+S A+AL+H+PE+LILDEPTVG+DPLLR++IW     + K G  T+I+TTH ++
Sbjct:   118 GGMKKRLSLAIALLHEPEILILDEPTVGIDPLLRKTIWEKFYDLKKKGT-TIIVTTHIMD 176

Query:    67 EA 68
             EA
Sbjct:   177 EA 178

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TIGR_CMR|SO_3802 SO_3802 "ABC transporter, ATP-binding protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 191 (72.3 bits), Expect = 6.7e-15, P = 6.7e-15
 Identities = 38/62 (61%), Positives = 48/62 (77%)

Query:     7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
             GG +RR+  A ALMH+P+LLILDEPT GVD  LR+S+W  L QI + G  T+I+TTHY+E
Sbjct:   142 GGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWEFLKQINQQG-VTIILTTHYLE 200

Query:    67 EA 68
             EA
Sbjct:   201 EA 202

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

UNIPROTKB|Q9KUD3 VC_0589 "ABC transporter, ATP-binding protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 190 (71.9 bits), Expect = 7.6e-15, P = 7.6e-15
 Identities = 38/62 (61%), Positives = 47/62 (75%)

Query:     7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
             GG +RR+  A ALMH+P+LLILDEPT GVD  LR+S+W  L QI   G  T+I+TTHY+E
Sbjct:   138 GGMKRRLMIARALMHEPQLLILDEPTAGVDIELRRSMWEFLKQINAQG-VTIILTTHYLE 196

Query:    67 EA 68
             EA
Sbjct:   197 EA 198

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TIGR_CMR|VC_0589 VC_0589 "ABC transporter, ATP-binding protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 190 (71.9 bits), Expect = 7.6e-15, P = 7.6e-15
 Identities = 38/62 (61%), Positives = 47/62 (75%)

Query:     7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
             GG +RR+  A ALMH+P+LLILDEPT GVD  LR+S+W  L QI   G  T+I+TTHY+E
Sbjct:   138 GGMKRRLMIARALMHEPQLLILDEPTAGVDIELRRSMWEFLKQINAQG-VTIILTTHYLE 196

Query:    67 EA 68
             EA
Sbjct:   197 EA 198

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TIGR_CMR|CPS_1066 CPS_1066 "ABC transporter, ATP-binding protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 185 (70.2 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 32/64 (50%), Positives = 51/64 (79%)

Query:     7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
             GGQ++R+  A+AL++DP+++ LDEPT G+DP  R++ W  L++  K+ NKTV++TTHY++
Sbjct:   130 GGQRQRLLLALALINDPQIIFLDEPTTGLDPHARRNFWQ-LIKNIKEQNKTVVLTTHYMD 188

Query:    67 EARQ 70
             EA Q
Sbjct:   189 EAEQ 192

GO:0005524 "ATP binding" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84K47	AB2A_ARATH	No assigned EC number	0.5076	0.7974	0.0640	yes	N/A
P55476	NODI_RHISN	3, ., 6, ., 3, ., -	0.5483	0.7721	0.1778	yes	N/A
O07016	YVFR_BACSU	3, ., 6, ., 3, ., -	0.5384	0.8101	0.2126	yes	N/A
Q55EH8	ABCGN_DICDI	No assigned EC number	0.6029	0.8607	0.0970	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	79
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	6e-29
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	8e-29
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	1e-21
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-21
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	5e-20
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	1e-19
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	7e-19
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	2e-18
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	4e-18
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	5e-18
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	9e-18
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	9e-18
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	1e-17
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	1e-17
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	6e-17
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	8e-17
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	9e-17
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	2e-16
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	8e-16
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	9e-16
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	1e-15
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	2e-15
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	3e-15
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	5e-15
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	7e-15
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	1e-14
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-14
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-14
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	2e-14
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	2e-14
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	3e-14
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	6e-14
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	6e-14
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	6e-14
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	7e-14
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	8e-14
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	9e-14
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	9e-14
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	2e-13
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	2e-13
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	2e-13
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	2e-13
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	2e-13
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-13
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	2e-13
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	3e-13
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	4e-13
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	4e-13
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	6e-13
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	8e-13
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	1e-12
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	1e-12
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	1e-12
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	2e-12
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	2e-12
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-12
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	2e-12
COG4988	559	COG4988, CydD, ABC-type transport system involved	3e-12
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	3e-12
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	3e-12
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	4e-12
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	4e-12
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	4e-12
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	7e-12
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	7e-12
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	8e-12
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	9e-12
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	1e-11
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	1e-11
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	1e-11
COG4987	573	COG4987, CydC, ABC-type transport system involved	1e-11
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	1e-11
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	2e-11
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	2e-11
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	2e-11
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	2e-11
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	2e-11
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	2e-11
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	2e-11
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	3e-11
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	3e-11
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	4e-11
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	4e-11
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	5e-11
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	5e-11
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	6e-11
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	8e-11
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	9e-11
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	9e-11
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	9e-11
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	1e-10
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	1e-10
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	1e-10
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	1e-10
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	2e-10
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	2e-10
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-10
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	2e-10
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	2e-10
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	3e-10
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	3e-10
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	3e-10
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	4e-10
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	4e-10
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	5e-10
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	5e-10
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	5e-10
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	5e-10
COG4598	256	COG4598, HisP, ABC-type histidine transport system	5e-10
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	6e-10
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	7e-10
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	7e-10
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	7e-10
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	7e-10
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	8e-10
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	8e-10
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	9e-10
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	9e-10
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-09
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	1e-09
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	1e-09
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	1e-09
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	1e-09
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	2e-09
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	2e-09
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	2e-09
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	2e-09
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	3e-09
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	3e-09
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	3e-09
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	4e-09
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	4e-09
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	5e-09
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	5e-09
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	5e-09
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	6e-09
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	6e-09
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	7e-09
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	7e-09
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	7e-09
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	8e-09
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	1e-08
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	1e-08
pfam00005	119	pfam00005, ABC_tran, ABC transporter	1e-08
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	1e-08
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	1e-08
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	1e-08
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	1e-08
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	2e-08
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	2e-08
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	2e-08
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	2e-08
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	2e-08
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	2e-08
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	2e-08
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	2e-08
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	3e-08
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	3e-08
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	3e-08
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	3e-08
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	3e-08
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	4e-08
pfam13304	256	pfam13304, AAA_21, AAA domain	4e-08
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	4e-08
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	5e-08
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	5e-08
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	5e-08
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	6e-08
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	6e-08
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	7e-08
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	7e-08
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	7e-08
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	7e-08
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	7e-08
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	7e-08
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	8e-08
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	1e-07
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	1e-07
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	1e-07
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	1e-07
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	1e-07
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	1e-07
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	1e-07
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	1e-07
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	2e-07
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	2e-07
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	2e-07
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	2e-07
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	2e-07
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	2e-07
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-07
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	2e-07
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	2e-07
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	2e-07
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	3e-07
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	3e-07
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	3e-07
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	3e-07
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	3e-07
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	4e-07
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	4e-07
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	5e-07
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	6e-07
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	6e-07
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	6e-07
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	7e-07
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	8e-07
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-06
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-06
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	1e-06
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	1e-06
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	1e-06
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	1e-06
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	1e-06
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	1e-06
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	1e-06
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	1e-06
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	1e-06
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	2e-06
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	2e-06
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	2e-06
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	2e-06
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	2e-06
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-06
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	2e-06
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	3e-06
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	3e-06
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	3e-06
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	3e-06
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	3e-06
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	4e-06
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	4e-06
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	4e-06
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	5e-06
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	5e-06
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	5e-06
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	5e-06
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	6e-06
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	6e-06
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	7e-06
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	7e-06
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	7e-06
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	8e-06
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	9e-06
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	1e-05
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	1e-05
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	1e-05
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	1e-05
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	1e-05
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	1e-05
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	1e-05
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	2e-05
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	2e-05
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	2e-05
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	2e-05
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	2e-05
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	2e-05
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	2e-05
pfam13175	320	pfam13175, AAA_15, AAA ATPase domain	2e-05
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	3e-05
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	3e-05
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	3e-05
COG4133	209	COG4133, CcmA, ABC-type transport system involved	3e-05
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	3e-05
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	3e-05
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	3e-05
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	4e-05
smart00382	148	smart00382, AAA, ATPases associated with a variety	4e-05
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	4e-05
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	4e-05
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	5e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	6e-05
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	7e-05
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	7e-05
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	8e-05
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	8e-05
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	1e-04
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-04
COG5265	497	COG5265, ATM1, ABC-type transport system involved	1e-04
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	2e-04
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	2e-04
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	2e-04
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-04
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	2e-04
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	3e-04
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	3e-04
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	3e-04
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	4e-04
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	4e-04
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	4e-04
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	4e-04
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	4e-04
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	4e-04
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	5e-04
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	5e-04
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	5e-04
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	6e-04
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	7e-04
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	7e-04
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	7e-04
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	7e-04
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	8e-04
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	9e-04
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	0.001
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	0.001
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	0.001
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	0.001
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	0.001
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	0.002
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	0.002
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	0.002
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	0.003
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	0.003
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	0.003
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	0.004
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	0.004

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  103 bits (260), Expect = 6e-29
 Identities = 34/62 (54%), Positives = 49/62 (79%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG ++R+S A+AL+HDPELLILDEPT G+DP  R+ IW  L ++ K+G  T++++TH +E
Sbjct: 139 GGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE 198

Query: 67  EA 68
           EA
Sbjct: 199 EA 200

Length = 293

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  100 bits (252), Expect = 8e-29
 Identities = 32/64 (50%), Positives = 49/64 (76%), Gaps = 1/64 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG ++R++ A AL+HDPELLILDEPT G+DP  R+  W  L ++ K+G KT+++++H +E
Sbjct: 98  GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEG-KTILLSSHILE 156

Query: 67  EARQ 70
           EA +
Sbjct: 157 EAER 160

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 83.2 bits (206), Expect = 1e-21
 Identities = 29/64 (45%), Positives = 47/64 (73%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG +RR+  A +L+H PE+L LDEPT+G+DP  R  +W ++ ++ ++   T+++TTHY+E
Sbjct: 134 GGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME 193

Query: 67  EARQ 70
           EA Q
Sbjct: 194 EAEQ 197

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 81.1 bits (201), Expect = 2e-21
 Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL+ +P+LL+LDEPT G+DP  R+ +   L ++ ++G +TVII TH  E
Sbjct: 83  GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEG-RTVIIVTHDPE 141

Query: 67  EARQA 71
            A  A
Sbjct: 142 LAELA 146

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 79.1 bits (196), Expect = 5e-20
 Identities = 27/62 (43%), Positives = 48/62 (77%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG +R++S A+AL+  P +L+LDEPT G+DP  R++IW+ ++++ K   +++I+TTH ++
Sbjct: 136 GGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD 193

Query: 67  EA 68
           EA
Sbjct: 194 EA 195

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 79.4 bits (196), Expect = 1e-19
 Identities = 29/64 (45%), Positives = 49/64 (76%), Gaps = 1/64 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG +RR+  A +L+H P++L LDEPT G+DP  R++IW+++  + ++G  T+++TTHY+E
Sbjct: 127 GGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEG-VTILLTTHYME 185

Query: 67  EARQ 70
           EA +
Sbjct: 186 EADK 189

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 76.0 bits (188), Expect = 7e-19
 Identities = 27/64 (42%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A  L  DP++L+LDEPT G+DP  R+ +   L ++  +G KT+II TH ++
Sbjct: 137 GGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEG-KTIIIVTHDLD 195

Query: 67  EARQ 70
              +
Sbjct: 196 LLLE 199

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 76.4 bits (188), Expect = 2e-18
 Identities = 33/62 (53%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG +RR++ A AL++DP+LLILDEPT G+DP  R  IW  L  +   G KT+++TTH++E
Sbjct: 175 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARG-KTILLTTHFME 233

Query: 67  EA 68
           EA
Sbjct: 234 EA 235

Length = 340

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 74.6 bits (184), Expect = 4e-18
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A  L   PE+L+LDEPT G+DP  R+ +   L ++ ++G KT+II TH +E
Sbjct: 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE 200

Query: 67  EA 68
             
Sbjct: 201 LV 202

Length = 235

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 73.0 bits (180), Expect = 5e-18
 Identities = 27/63 (42%), Positives = 41/63 (65%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL  DP++L+LDEPT  +DP+ R+ +   L  +      TV++ TH ++
Sbjct: 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD 162

Query: 67  EAR 69
           EA 
Sbjct: 163 EAA 165

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 74.5 bits (183), Expect = 9e-18
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 4/74 (5%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG +RR++ A AL++DP++L+LDEPT G+DP  R  +W  L  +   G KT+++TTH++E
Sbjct: 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARG-KTILLTTHFME 199

Query: 67  EA-RQAH--TVIDN 77
           EA R      VI+ 
Sbjct: 200 EAERLCDRLCVIEE 213

Length = 306

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 74.6 bits (183), Expect = 9e-18
 Identities = 33/62 (53%), Positives = 46/62 (74%), Gaps = 1/62 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG +RR++ A AL++DP+LLILDEPT G+DP  R  IW  L  +   G KT+++TTH++E
Sbjct: 138 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARG-KTILLTTHFME 196

Query: 67  EA 68
           EA
Sbjct: 197 EA 198

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 72.5 bits (179), Expect = 1e-17
 Identities = 25/69 (36%), Positives = 42/69 (60%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL +DP++++ DEPT  +D    + +   L ++ K+   T+++ TH  E
Sbjct: 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202

Query: 67  EARQAHTVI 75
            A  A  +I
Sbjct: 203 LAEYADRII 211

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 72.6 bits (179), Expect = 1e-17
 Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 2/60 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG +RRV  A AL+ DP +LI+DEPT G+DP  R    N L ++ +D  + VI++TH +E
Sbjct: 133 GGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGED--RIVILSTHIVE 190

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 71.2 bits (175), Expect = 6e-17
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG +RRV  A AL+H P LL+LDEPTVG+DP  R +I  H+  + +D   +V+  TH ++
Sbjct: 135 GGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVD 194

Query: 67  EARQAHTVI 75
           E      ++
Sbjct: 195 EIEADDRLV 203

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 71.0 bits (175), Expect = 8e-17
 Identities = 26/67 (38%), Positives = 46/67 (68%), Gaps = 2/67 (2%)

Query: 2   EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
           ++S  GG ++RV+ A AL   P+LL+LDEP   +D L R+ + + L+++ ++  KTV++ 
Sbjct: 130 QLS--GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLV 187

Query: 62  THYIEEA 68
           TH ++EA
Sbjct: 188 THDVDEA 194

Length = 248

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 70.6 bits (174), Expect = 9e-17
 Identities = 27/69 (39%), Positives = 45/69 (65%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL+++P++++ DEPT  +D    + +   L ++ K+  KT+I+ TH  E
Sbjct: 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE 204

Query: 67  EARQAHTVI 75
            A+ A  VI
Sbjct: 205 LAKYADRVI 213

Length = 226

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 69.8 bits (172), Expect = 2e-16
 Identities = 27/62 (43%), Positives = 42/62 (67%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG ++RV+ A AL  DP++L+LDEP   +D L R+ +   L+ I ++  KTV++ TH I+
Sbjct: 134 GGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID 193

Query: 67  EA 68
           EA
Sbjct: 194 EA 195

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 68.5 bits (168), Expect = 8e-16
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQI-TKDGNKTVIITTHYIE 66
           G+QRRV  A AL+ DPELLILDEP  G+D + R+ + N L ++    G   ++  TH+ E
Sbjct: 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE 234

Query: 67  EA 68
           E 
Sbjct: 235 EI 236

Length = 257

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 67.9 bits (167), Expect = 9e-16
 Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 7/73 (9%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV  A AL+ DP+LL+LDEP  GVDP  ++ I+  L ++ ++G  T+++ TH + 
Sbjct: 135 GGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG-MTILVVTHDL- 192

Query: 67  EARQAHTVIDNYD 79
                  V++ +D
Sbjct: 193 -----GLVLEYFD 200

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 68.0 bits (167), Expect = 1e-15
 Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV  A AL  +P+LL+LDEP  GVD   ++ I++ L ++ +   KTV++ TH + 
Sbjct: 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL-RQEGKTVLMVTHDLG 200

Query: 67  EARQ 70
               
Sbjct: 201 LVMA 204

Length = 254

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 67.2 bits (165), Expect = 2e-15
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL  +P LL+LDEP   +D  LR+ +   L ++ ++   T I  TH  E
Sbjct: 133 GGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192

Query: 67  EA-RQAHTVI 75
           EA   A  + 
Sbjct: 193 EALALADRIA 202

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 65.5 bits (161), Expect = 3e-15
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+ DP +LILDE T  +DP     I   L  + K   KTVI+  H + 
Sbjct: 99  GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKG--KTVIVIAHRLS 156

Query: 67  EARQAHTVI 75
             R A  +I
Sbjct: 157 TIRDADRII 165

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 65.0 bits (159), Expect = 5e-15
 Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 6/74 (8%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY-- 64
           GG+++R++ A  L+ D  +++LDEPTVG+DP+  + + + + ++ KD  KT+I  TH+  
Sbjct: 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD--KTLIWITHHLT 158

Query: 65  -IEEARQAHTVIDN 77
            IE   +    ++N
Sbjct: 159 GIEHMDKIL-FLEN 171

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 66.1 bits (162), Expect = 7e-15
 Identities = 25/64 (39%), Positives = 42/64 (65%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A ALM  P+L++ DEP   +DP   + + + L +I ++   TVI++ H ++
Sbjct: 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD 206

Query: 67  EARQ 70
            AR+
Sbjct: 207 LARE 210

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 65.8 bits (161), Expect = 1e-14
 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ RRV+ A  L  +PE+L+LDEPT G+DP  R+ +     ++ K+   T ++ TH +E
Sbjct: 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME 207

Query: 67  E-ARQAHTVI 75
           + AR A  ++
Sbjct: 208 DAARYADQIV 217

Length = 290

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 66.2 bits (161), Expect = 2e-14
 Identities = 28/62 (45%), Positives = 47/62 (75%), Gaps = 2/62 (3%)

Query: 7    GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
            GG QR++S A+A + D ++++LDEPT GVDP  R+SIW+ L++      +T+I++TH+++
Sbjct: 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS--GRTIIMSTHHMD 1121

Query: 67   EA 68
            EA
Sbjct: 1122 EA 1123

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 65.8 bits (160), Expect = 2e-14
 Identities = 28/61 (45%), Positives = 46/61 (75%), Gaps = 1/61 (1%)

Query: 7    GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
            GG +R++S A+AL+  P L++LDEPT G+DP  R+ +WN +V I ++G + V++T+H +E
Sbjct: 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREG-RAVVLTSHSME 2131

Query: 67   E 67
            E
Sbjct: 2132 E 2132

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 64.2 bits (157), Expect = 2e-14
 Identities = 29/62 (46%), Positives = 38/62 (61%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++RV+ A AL   PELL+LDEP   +D  LR  +   L QI K+ N  VI  TH + 
Sbjct: 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193

Query: 67  EA 68
           EA
Sbjct: 194 EA 195

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 64.4 bits (158), Expect = 2e-14
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 4/71 (5%)

Query: 2   EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-GNKTVII 60
           E+S  GG ++RV+ A AL  DPELL+ DEPT G+DP+    I + L++  K     T I+
Sbjct: 136 ELS--GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVI-DDLIRSLKKELGLTSIM 192

Query: 61  TTHYIEEARQA 71
            TH ++ A   
Sbjct: 193 VTHDLDTAFAI 203

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 63.2 bits (155), Expect = 3e-14
 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 1   MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
            E+S  GG+++RV  A AL  +P +L+LDEPT  +D   +  +   L ++ ++  KTV++
Sbjct: 96  NELS--GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM 153

Query: 61  TTHYIEEA-RQAHTVI 75
             H +  A R A  VI
Sbjct: 154 VLHDLNLAARYADRVI 169

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 64.2 bits (157), Expect = 6e-14
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV  A AL  DP +L++DEP   +DP+ R+ +   + ++ K+  KT++  TH I+
Sbjct: 138 GGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID 197

Query: 67  EA 68
           EA
Sbjct: 198 EA 199

Length = 309

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 63.3 bits (155), Expect = 6e-14
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL  +P+LLI DEPT  +D  ++  I + L ++ ++   T++  TH + 
Sbjct: 148 GGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG 207

Query: 67  EARQ-AHTVI 75
              + A  V 
Sbjct: 208 VVAKIADRVA 217

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 63.1 bits (154), Expect = 6e-14
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD---GNKTVIITTH 63
           GG++RRVS AV L+ DP++LILDEPT G+D         +LV         N+ VI+T H
Sbjct: 146 GGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA----LNLVSTLSQLARRNRIVILTIH 201

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 63.9 bits (156), Expect = 7e-14
 Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ+RRV+ A  +  +P++LILDEPT G+DP  R  I N + ++ K+ N T+I+ +H +E
Sbjct: 147 GGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME 206

Query: 67  E-ARQAHTVI 75
           + A+ A  +I
Sbjct: 207 DVAKLADRII 216

Length = 287

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 62.6 bits (153), Expect = 8e-14
 Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 2   EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
           E+S  GG+Q+RV+ A A++  P L++ DEPT  +DP  R  + + L+++  D  KT+II 
Sbjct: 134 ELS--GGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLEL-NDEGKTIIIV 190

Query: 62  THYIEEARQAHTVID 76
           TH  E A+QA  VI+
Sbjct: 191 THDPEVAKQADRVIE 205

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 62.7 bits (153), Expect = 9e-14
 Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
            G Q++V F  A++HDPELLILDEP  G+DP+  + + + + ++     KTVI++TH +E
Sbjct: 131 KGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL-ARAGKTVILSTHQME 189

Query: 67  EA 68
             
Sbjct: 190 LV 191

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 62.7 bits (153), Expect = 9e-14
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV  A AL  DP LL++DEP   +DP+ R  +     ++ ++  KT++  TH I+
Sbjct: 138 GGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID 197

Query: 67  EA 68
           EA
Sbjct: 198 EA 199

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 25/58 (43%), Positives = 42/58 (72%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65
           GQ+ R   A AL+H+PE+L LDEPT+G+D + +++I N L +  ++   TV++T+HY+
Sbjct: 157 GQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM 214

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 62.8 bits (153), Expect = 2e-13
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64
           GQ+ R   A AL+H P++L LDEPTVG+D   + +I   L +  ++   TV++TTH 
Sbjct: 160 GQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI 216

Length = 325

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.3 bits (152), Expect = 2e-13
 Identities = 28/69 (40%), Positives = 42/69 (60%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A  L  +PE++I DE T  +DP  ++ I   +V + K   KT+I  TH ++
Sbjct: 145 GGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD 204

Query: 67  EARQAHTVI 75
           EA  A  VI
Sbjct: 205 EAILADKVI 213

Length = 271

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 61.9 bits (151), Expect = 2e-13
 Identities = 23/57 (40%), Positives = 39/57 (68%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++R++ A AL+ +P+LLILDEPT  +D  ++  I N L+++ K+   T +  +H
Sbjct: 144 GGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH 200

Length = 252

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.4 bits (152), Expect = 2e-13
 Identities = 29/69 (42%), Positives = 44/69 (63%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A  L   PE +I DEPT  +DP  R+ + N + ++ K    T+I+ THY+E
Sbjct: 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME 206

Query: 67  EARQAHTVI 75
           EA +A  +I
Sbjct: 207 EAVEADRII 215

Length = 280

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 62.6 bits (153), Expect = 2e-13
 Identities = 21/60 (35%), Positives = 33/60 (55%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG ++RV  A+AL   P+LLI DEPT  +D   +  I + L  + ++    V+  TH + 
Sbjct: 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG 216

Length = 539

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 61.9 bits (151), Expect = 2e-13
 Identities = 22/64 (34%), Positives = 40/64 (62%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL+  P++++ DEP   +DP   + + + L  I ++   TVI+  H ++
Sbjct: 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209

Query: 67  EARQ 70
            A++
Sbjct: 210 LAKK 213

Length = 258

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 61.8 bits (151), Expect = 3e-13
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 2   EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
           E+S  GG ++RV+ A A+  DPELL LDEPT G+DP+    I   + ++      TVI+ 
Sbjct: 145 ELS--GGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMV 202

Query: 62  THYIEEAR 69
           TH ++   
Sbjct: 203 THDLDSLL 210

Length = 263

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 61.0 bits (149), Expect = 4e-13
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL  DP++++ DEPT  +DP L   + + +  + ++G  T+II TH + 
Sbjct: 139 GGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG-MTMIIVTHEMG 197

Query: 67  EARQ-AHTVI 75
            AR+ A  VI
Sbjct: 198 FAREVADRVI 207

Length = 240

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 61.5 bits (150), Expect = 4e-13
 Identities = 24/62 (38%), Positives = 42/62 (67%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG Q+RV  A AL  DP++L++DE    +DPL+R+ + + L+++  +  KT++  TH ++
Sbjct: 163 GGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD 222

Query: 67  EA 68
           EA
Sbjct: 223 EA 224

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 61.0 bits (149), Expect = 6e-13
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++RV  A AL  +  +L+LDEPT  +D   +  +   L  + ++   TV++  H + 
Sbjct: 141 GGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN 200

Query: 67  EA-RQAHTVI 75
            A R A  +I
Sbjct: 201 LAARYADHLI 210

Length = 258

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 60.9 bits (148), Expect = 8e-13
 Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 3/63 (4%)

Query: 5   SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64
           S+G +QR V  A AL+HDP++LILDEPT G+DP     I N +  I KD  KT+I++TH 
Sbjct: 135 SKGYRQR-VGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD--KTIILSTHI 191

Query: 65  IEE 67
           ++E
Sbjct: 192 MQE 194

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 61.0 bits (149), Expect = 1e-12
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG+QRR+  A AL+HD  LL+LDEPT G+D    + I   L +  ++  KTV++ TH
Sbjct: 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQN--KTVLMITH 532

Length = 574

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 59.7 bits (145), Expect = 1e-12
 Identities = 25/63 (39%), Positives = 40/63 (63%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+Q+RV+ A AL+ +P++L+LDEP   +D   ++ +   L +I K+   TV+  TH  E
Sbjct: 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191

Query: 67  EAR 69
           EA 
Sbjct: 192 EAW 194

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 59.1 bits (144), Expect = 1e-12
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG+++RVS A+ L+ +P LL LDEPT G+D      + + L ++   G +T+I + H
Sbjct: 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTG-RTIICSIH 169

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 59.8 bits (145), Expect = 2e-12
 Identities = 26/62 (41%), Positives = 40/62 (64%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG ++RV  A AL  +P+LL+LDEP   +D L R+ +   L+ + ++  K V++ TH IE
Sbjct: 135 GGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE 194

Query: 67  EA 68
           EA
Sbjct: 195 EA 196

Length = 259

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 59.5 bits (145), Expect = 2e-12
 Identities = 20/57 (35%), Positives = 33/57 (57%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
            GQQRR+  A AL   P+LL+LDEP  G++P   + +   + ++   G  T+++  H
Sbjct: 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEH 208

Length = 250

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 59.2 bits (144), Expect = 2e-12
 Identities = 25/63 (39%), Positives = 40/63 (63%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL   P+L++ DEP   +DP   + + ++L +I K+   TVII  H ++
Sbjct: 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD 207

Query: 67  EAR 69
            A+
Sbjct: 208 LAK 210

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 59.7 bits (145), Expect = 2e-12
 Identities = 24/62 (38%), Positives = 41/62 (66%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG Q+RV  A AL +DP++L++DE    +DPL+R  + + L+++     KT++  TH ++
Sbjct: 167 GGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD 226

Query: 67  EA 68
           EA
Sbjct: 227 EA 228

Length = 386

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 59.6 bits (145), Expect = 3e-12
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ +R++ A AL+    LL+LDEPT  +D    Q I   L ++ K   KTV++ TH +E
Sbjct: 459 GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLE 516

Query: 67  EARQAHTVI 75
           +A  A  ++
Sbjct: 517 DAADADRIV 525

Length = 559

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 58.3 bits (142), Expect = 3e-12
 Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL  +P++++ DEPT  +DP L   + + +  + ++G  T+++ TH + 
Sbjct: 138 GGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG-MTMVVVTHEMG 196

Query: 67  EARQ-AHTVI 75
            AR+ A  VI
Sbjct: 197 FAREVADRVI 206

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 59.5 bits (145), Expect = 3e-12
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+  P++L+LDE T  +DP     I  +L+QI     +TVII  H + 
Sbjct: 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI--LQGRTVIIIAHRLS 669

Query: 67  EARQAHTVI 75
             R A  +I
Sbjct: 670 TIRSADRII 678

Length = 709

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 58.5 bits (142), Expect = 4e-12
 Identities = 21/61 (34%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
           G +++V+ A AL+HDP +L+LDEPT G+D +  +++   + Q+ +   K ++ +TH ++E
Sbjct: 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQE 198

Query: 68  A 68
            
Sbjct: 199 V 199

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 58.2 bits (142), Expect = 4e-12
 Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+Q+ ++ A ALM  P+LL+LDEP+ G+ P + + I+  + ++  +G  T+++      
Sbjct: 135 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEG-VTILLVEQNAR 193

Query: 67  EARQ 70
            A +
Sbjct: 194 FALE 197

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.9 bits (143), Expect = 4e-12
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ+RRV+ A  L  +P+ L+ DEPT G+DP   + I      + K G KT+I+ TH
Sbjct: 168 GGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQG-KTIILVTH 223

Length = 305

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 57.7 bits (140), Expect = 7e-12
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 7/70 (10%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVI---ITTH 63
           GGQQ+RV+ A ALM +P++L+ DEPT  +DP     I   +V I ++  +T I   I TH
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDP----EITAQIVSIIRELAETGITQVIVTH 199

Query: 64  YIEEARQAHT 73
            +E AR+  +
Sbjct: 200 EVEVARKTAS 209

Length = 242

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 58.5 bits (142), Expect = 7e-12
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 7/60 (11%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD---GNKTVIITTH 63
           GG+++R++FA  L+ DP LL  DEPT G+D  +  S+    VQ+ K      KT+I T H
Sbjct: 169 GGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSV----VQVLKGLAQKGKTIICTIH 224

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 57.3 bits (139), Expect = 8e-12
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+   +LLI DEPT G+D    + +   + ++   G K VI+ TH  E
Sbjct: 129 GGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQG-KAVIVITHDYE 187

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 57.9 bits (140), Expect = 9e-12
 Identities = 24/62 (38%), Positives = 40/62 (64%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG Q+RV  A AL  +P++L++DE    +DPL+R S+ + L ++     KT++  TH ++
Sbjct: 132 GGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD 191

Query: 67  EA 68
           EA
Sbjct: 192 EA 193

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 57.7 bits (139), Expect = 1e-11
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RVS A AL  +PE+L+ DEPT  +DP L   +   + Q+ ++G KT+++ TH + 
Sbjct: 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEG-KTMVVVTHEMG 213

Query: 67  EARQAHT 73
            AR   +
Sbjct: 214 FARHVSS 220

Length = 257

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 57.4 bits (139), Expect = 1e-11
 Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
           G +++V+ A AL+HDP +L+LDEPT G+D   R+   + + Q  K+  + VI ++H ++E
Sbjct: 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ-LKNEGRAVIFSSHIMQE 195

Query: 68  A 68
            
Sbjct: 196 V 196

Length = 245

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 56.9 bits (138), Expect = 1e-11
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+Q+RV+ A A+++ P LL+ DEPT  +DP L + I + L ++ K G  TVI+ TH + 
Sbjct: 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGT-TVIVATHDLS 198

Query: 67  EARQAH 72
              +  
Sbjct: 199 LVDRVA 204

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 57.7 bits (140), Expect = 1e-11
 Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG++RR++ A AL+HD  L +LDEPT G+DP+  + +   L +  +   KT+++ TH + 
Sbjct: 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEG--KTLLMVTHRLR 534

Query: 67  EARQAHTVI 75
              +   +I
Sbjct: 535 GLERMDRII 543

Length = 573

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.1 bits (138), Expect = 1e-11
 Identities = 27/64 (42%), Positives = 42/64 (65%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+ +RVS A  L ++PE+L+LDEPT  +DP   + I   +V++    N TVI  TH +E
Sbjct: 134 GGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME 193

Query: 67  EARQ 70
           +A++
Sbjct: 194 QAKR 197

Length = 241

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 57.1 bits (138), Expect = 2e-11
 Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ R+++    L  +P++++LDEPT G+DP  ++ +   L  +  D NKT+I+ +H + 
Sbjct: 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN 207

Query: 67  E-ARQAHTVI 75
           E AR A  VI
Sbjct: 208 EVARYADEVI 217

Length = 286

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 57.2 bits (139), Expect = 2e-11
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG ++RV  A+AL  +P+LLI DEPT  +D  ++  I + L ++ ++    +I+ TH + 
Sbjct: 156 GGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG 215

Query: 67  EARQ-AHTVIDNYD 79
              + A  V   Y 
Sbjct: 216 VVAEIADRVAVMYA 229

Length = 316

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 57.1 bits (138), Expect = 2e-11
 Identities = 28/69 (40%), Positives = 43/69 (62%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A  L  +P+++ILDE T  +DP  ++ I   + ++ K  N TVI  TH I+
Sbjct: 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID 205

Query: 67  EARQAHTVI 75
           EA  A  V+
Sbjct: 206 EANMADQVL 214

Length = 282

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.9 bits (138), Expect = 2e-11
 Identities = 27/69 (39%), Positives = 42/69 (60%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A  L   P+++ILDE T  +DP  R+ +   + Q+ +    TV+  TH ++
Sbjct: 143 GGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD 202

Query: 67  EARQAHTVI 75
           EA QA  VI
Sbjct: 203 EAAQADRVI 211

Length = 279

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG+Q+RV+ A A+++ P +L+ DEPT  +DP L   I     +I + G  TV++ TH
Sbjct: 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGT-TVLMATH 195

Length = 223

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 56.7 bits (138), Expect = 2e-11
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
            GQQRR+  A AL  DP+LL+LDEP  G++P   + +   + ++ + G  TV++  H
Sbjct: 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERG-ITVLLVEH 201

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 56.6 bits (137), Expect = 2e-11
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV  A AL  +P+LL+LDEP   +D   R+ +   L+++ ++  K V++ TH IE
Sbjct: 131 GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE 190

Query: 67  EA 68
           EA
Sbjct: 191 EA 192

Length = 255

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 55.5 bits (134), Expect = 3e-11
 Identities = 25/62 (40%), Positives = 43/62 (69%), Gaps = 1/62 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++RV+ A A+   P++L+LDEPT G+DP  R+ +   L ++  +G  TV+I+TH ++
Sbjct: 130 GGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGM-TVVISTHDVD 188

Query: 67  EA 68
            A
Sbjct: 189 LA 190

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.6 bits (137), Expect = 3e-11
 Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++RV+ A  L   PE+++LDEPT G+DP+    I   L  + K+G  T+II+TH
Sbjct: 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEG-ITIIISTH 195

Length = 275

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 55.6 bits (135), Expect = 4e-11
 Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A AL ++PE+L+LDEPT  +DP+    I   + ++ K+   T++I TH ++
Sbjct: 144 GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQ 201

Query: 67  EA 68
           +A
Sbjct: 202 QA 203

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.0 bits (135), Expect = 4e-11
 Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ+RRV+ A  L   PE+LI DEPT G+DP     +   L+   K  NKTV + TH +E
Sbjct: 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHTME 237

Length = 320

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 56.1 bits (136), Expect = 5e-11
 Identities = 24/60 (40%), Positives = 39/60 (65%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL ++P++L+ DE T  +DP   QSI   L  I ++   T+++ TH +E
Sbjct: 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME 203

Length = 339

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 55.7 bits (135), Expect = 5e-11
 Identities = 22/62 (35%), Positives = 36/62 (58%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL+  P++ +LDEP   +D  LR  + + + ++ +    T I  TH   
Sbjct: 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV 195

Query: 67  EA 68
           EA
Sbjct: 196 EA 197

Length = 338

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 55.5 bits (134), Expect = 6e-11
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL   P+L++ DEPT  +DP LR  +   +  + ++G  T++I TH I 
Sbjct: 139 GGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG-MTMVIVTHEIG 197

Query: 67  EARQ 70
            A +
Sbjct: 198 FAEK 201

Length = 240

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 54.8 bits (132), Expect = 8e-11
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 7/70 (10%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD---GNKTVIITTH 63
           GGQQ+RV+ A ALM +P++L+ DEPT  +DP     I   +V I K+      T +I TH
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDP----EITAQIVSIIKELAETGITQVIVTH 199

Query: 64  YIEEARQAHT 73
            +E AR+  +
Sbjct: 200 EVEVARKTAS 209

Length = 242

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 55.4 bits (134), Expect = 9e-11
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ +R++ A A + D  LL+LDEPT  +D      +   L  + +   +TV++ TH + 
Sbjct: 461 GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ--GRTVLLVTHRLA 518

Query: 67  EARQAHTVID 76
            A  A  ++ 
Sbjct: 519 LAALADRIVV 528

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 54.4 bits (132), Expect = 9e-11
 Identities = 21/69 (30%), Positives = 39/69 (56%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R+S A A+  D ++ +LD+P   VD  + + I+ + +      NKT I+ TH ++
Sbjct: 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ 189

Query: 67  EARQAHTVI 75
               A  ++
Sbjct: 190 LLPHADQIV 198

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 55.5 bits (134), Expect = 9e-11
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+ +P +LI DE T  +D      I  ++ +I +   +TVII  H + 
Sbjct: 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR--GRTVIIIAHRLS 653

Query: 67  EARQAHTVI 75
             R    +I
Sbjct: 654 TVRACDRII 662

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 54.6 bits (132), Expect = 1e-10
 Identities = 26/62 (41%), Positives = 41/62 (66%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL+++P++L+LDEP   +D  LR+ +   L ++ K+   T +  TH  E
Sbjct: 133 GGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE 192

Query: 67  EA 68
           EA
Sbjct: 193 EA 194

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 54.1 bits (131), Expect = 1e-10
 Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 9/67 (13%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPL----LRQSIWNHLVQITKDGNKTVIITTH 63
           G ++R+  A+AL+ +P+LLILDEPT G+DP     LR+ I +      +D   TV+I++H
Sbjct: 130 GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL-----RDQGITVLISSH 184

Query: 64  YIEEARQ 70
            + E ++
Sbjct: 185 LLSEIQK 191

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 54.4 bits (131), Expect = 1e-10
 Identities = 25/62 (40%), Positives = 41/62 (66%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG ++RV+ A AL   P++L+LDEP   +D L R ++   L+QI ++   TV++ TH ++
Sbjct: 117 GGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD 176

Query: 67  EA 68
           EA
Sbjct: 177 EA 178

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 54.1 bits (131), Expect = 1e-10
 Identities = 22/65 (33%), Positives = 42/65 (64%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ++++ A AL+  P+LL+LDEPT G+ P + + I   + ++  +G   +++   Y++
Sbjct: 134 GGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD 193

Query: 67  EARQA 71
            AR+ 
Sbjct: 194 FAREL 198

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 54.3 bits (131), Expect = 2e-10
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 10/68 (14%)

Query: 5   SRGGQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVII 60
           S+G QQ+ + F  A++H+PELLILDEP  G+DP    LL+ +I+       K+   T+I 
Sbjct: 132 SKGNQQK-IQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFE-----LKEEGATIIF 185

Query: 61  TTHYIEEA 68
           ++H +E  
Sbjct: 186 SSHRMEHV 193

Length = 300

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 53.2 bits (129), Expect = 2e-10
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG Q++V  A  L  DP +LILDEPT GVD   +  I+  + ++   G K V++ +  ++
Sbjct: 107 GGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAG-KAVLLISSELD 165

Query: 67  EARQ 70
           E   
Sbjct: 166 ELLG 169

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 54.4 bits (132), Expect = 2e-10
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG Q++V  A  L  DP++LILDEPT G+D   +  I+  + ++  +G K +++ +  + 
Sbjct: 404 GGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEG-KAILMISSELP 462

Query: 67  EA 68
           E 
Sbjct: 463 EL 464

Length = 500

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 26/59 (44%), Positives = 41/59 (69%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GQ++RV+ A  L+ +P++L+LDEPT G+DP+    I   LV++ K+   T+II TH I+
Sbjct: 145 GQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID 203

Length = 283

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.8 bits (129), Expect = 2e-10
 Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A AL  +PE+++LDEPT  +DP+  Q I   L ++++  N T++I TH I 
Sbjct: 149 GGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIG 206

Query: 67  EA 68
           +A
Sbjct: 207 QA 208

Length = 250

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 53.7 bits (130), Expect = 3e-10
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG++RRV  A AL  +P+ L+LDEP  GVDP+  Q I   +++I KD    V+IT H + 
Sbjct: 136 GGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI-QKIIKILKDRGIGVLITDHNVR 194

Query: 67  E 67
           E
Sbjct: 195 E 195

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 54.0 bits (130), Expect = 3e-10
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RVS A ALM+  ++++ DEPT  +D    + +   L Q+   G+ TVII TH  +
Sbjct: 147 GGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH-TVIIVTHDPQ 205

Query: 67  EARQAHTVIDNYD 79
            A QA  VI+  D
Sbjct: 206 VAAQAERVIEIRD 218

Length = 648

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 53.9 bits (130), Expect = 3e-10
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG+++R++ A AL+ D  +L+LDEPT  +D      +   L+     G   V+IT H
Sbjct: 474 GGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAAL-SGRTVVLITHH 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 53.6 bits (129), Expect = 4e-10
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG Q+RV  A A   +  +L++DEP   +DPL+R  + + L+++     KT++  +H ++
Sbjct: 167 GGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLD 226

Query: 67  EA 68
           EA
Sbjct: 227 EA 228

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 52.8 bits (127), Expect = 4e-10
 Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
           G ++R+  A+AL++ P+LLILDEPT G+DP+  Q +   +    + G  TVI+++H + E
Sbjct: 128 GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQG-ITVILSSHILSE 186

Query: 68  ARQ 70
            +Q
Sbjct: 187 VQQ 189

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 52.6 bits (126), Expect = 5e-10
 Identities = 23/63 (36%), Positives = 42/63 (66%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A  L+    +L+LDEP   +DPLLR+ +   + Q+  +  +T+++ TH++ 
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190

Query: 67  EAR 69
           +AR
Sbjct: 191 DAR 193

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.3 bits (128), Expect = 5e-10
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ RRV+ A  + ++PE+L LDEP  G+DP  R+ +        K G+ TVI+ TH
Sbjct: 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGH-TVILVTH 203

Length = 287

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.1 bits (127), Expect = 5e-10
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A AL  DPE+L+ DEPT  +DP+   SI   L+   K+   T++I TH ++
Sbjct: 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASI-EELISDLKN-KVTILIVTHNMQ 221

Query: 67  EA 68
           +A
Sbjct: 222 QA 223

Length = 265

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.8 bits (127), Expect = 5e-10
 Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ RRV+ A  L  +P++L+LDEPT G+DP  R+ +     ++ + G  T+++ TH ++
Sbjct: 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSG-MTIVLVTHLMD 206

Query: 67  E 67
           +
Sbjct: 207 D 207

Length = 280

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 52.8 bits (127), Expect = 5e-10
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL  +PE+++ DEPT  +DP L   +   +  + ++G +T+++ TH + 
Sbjct: 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG-RTMVVVTHEMG 213

Query: 67  EARQ 70
            AR 
Sbjct: 214 FARD 217

Length = 256

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 52.7 bits (127), Expect = 6e-10
 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A AL  +PE+L+LDEPT  +DP+    I   + ++ K    T++I TH ++
Sbjct: 147 GGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQ 204

Query: 67  EAR 69
           +A 
Sbjct: 205 QAA 207

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 52.5 bits (126), Expect = 7e-10
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A AL  +PE+L++DEP   +DP+  Q I   L+   K    T+II TH ++
Sbjct: 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKI-EELIHELK-ARYTIIIVTHNMQ 209

Query: 67  EA 68
           +A
Sbjct: 210 QA 211

Length = 253

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.7 bits (126), Expect = 7e-10
 Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           +S  GGQQ+R+  A A+  +PE+L+LDEP   +DP+  + +   +V++ KD   T+ + T
Sbjct: 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD--YTIALVT 205

Query: 63  HYIEEARQ 70
           H +++A +
Sbjct: 206 HNMQQAIR 213

Length = 261

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 52.4 bits (126), Expect = 7e-10
 Identities = 22/64 (34%), Positives = 40/64 (62%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A  L+ +  +L+LDEP   +DP LR  +   + Q+  +   T+++ TH+ E
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE 191

Query: 67  EARQ 70
           +A +
Sbjct: 192 DAAR 195

Length = 231

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 52.7 bits (127), Expect = 7e-10
 Identities = 25/62 (40%), Positives = 40/62 (64%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL+ +P++L+LDEP   +D  LR+ +   L ++ ++   T +  TH  E
Sbjct: 139 GGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE 198

Query: 67  EA 68
           EA
Sbjct: 199 EA 200

Length = 352

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 52.2 bits (126), Expect = 8e-10
 Identities = 24/64 (37%), Positives = 40/64 (62%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV  A AL ++P++L+ DE T  +DP   QSI   L  I ++   T+++ TH +E
Sbjct: 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME 202

Query: 67  EARQ 70
             ++
Sbjct: 203 VVKR 206

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.4 bits (125), Expect = 8e-10
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ RRV+ A  L  +PE+L+LDEPT G+DP  R  +      I + G +TV++ TH ++
Sbjct: 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSG-QTVVLVTHLMD 205

Query: 67  E 67
           +
Sbjct: 206 D 206

Length = 288

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 52.1 bits (126), Expect = 9e-10
 Identities = 21/64 (32%), Positives = 40/64 (62%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+Q+ ++ A ALM  P+LL+LDEP+ G+ P + + I+  + ++ K+G  T+++      
Sbjct: 139 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR 198

Query: 67  EARQ 70
            A +
Sbjct: 199 FALE 202

Length = 237

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 52.4 bits (126), Expect = 9e-10
 Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 3/69 (4%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+ D ++LILDE T  +D +  + I N+L+ +    +KT+I   H + 
Sbjct: 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ---DKTIIFVAHRLS 670

Query: 67  EARQAHTVI 75
            A+Q+  +I
Sbjct: 671 VAKQSDKII 679

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 51.8 bits (125), Expect = 1e-09
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL  +P+LLILDEP   +D  ++  + N L  + ++   T +  +H + 
Sbjct: 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA 491

Query: 67  EARQ-AHTVI 75
             R  A  V 
Sbjct: 492 VVRYIADRVA 501

Length = 539

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.1 bits (125), Expect = 1e-09
 Identities = 21/60 (35%), Positives = 39/60 (65%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++RV+ A  +  +P++L+LDEPT G+DP   + + + L  + +    TVI +TH ++
Sbjct: 140 GGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD 199

Length = 277

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 51.5 bits (124), Expect = 1e-09
 Identities = 20/62 (32%), Positives = 35/62 (56%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+   A++ +P++ ++DEP   +D  LR  +   L ++ +    T I  TH   
Sbjct: 133 GGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192

Query: 67  EA 68
           EA
Sbjct: 193 EA 194

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL   P LL+LDEP   +D  +R+ +   + Q+ +    T I+ TH  E
Sbjct: 137 GGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196

Query: 67  EA 68
           EA
Sbjct: 197 EA 198

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 50.5 bits (122), Expect = 1e-09
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
            G+++ V  A AL  +  LLILDEPT  + P   + ++  + ++   G   VI  +H ++
Sbjct: 85  VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQG-VAVIFISHRLD 143

Query: 67  EARQ-AHTVI 75
           E  + A  V 
Sbjct: 144 EVFEIADRVT 153

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG++RRV  A AL  +P+ ++LDEP  GVDP+    I   +++  KD    V+IT H + 
Sbjct: 142 GGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR-IIKHLKDRGIGVLITDHNVR 200

Query: 67  E 67
           E
Sbjct: 201 E 201

Length = 243

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL   PE+++ DEPT  +DP L   + N + Q+ ++  +T++I TH + 
Sbjct: 147 GGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMS 205

Query: 67  EAR 69
            AR
Sbjct: 206 FAR 208

Length = 250

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.1 bits (122), Expect = 2e-09
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A AL   PE+L+ DEPT  +DP     I +  +++ KD   T+++ TH+ +
Sbjct: 149 GGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQ 206

Query: 67  EA 68
           +A
Sbjct: 207 QA 208

Length = 250

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 51.0 bits (122), Expect = 2e-09
 Identities = 22/63 (34%), Positives = 40/63 (63%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++RV+ A  L+ D  +L+LDEP   +DP LR  + + ++ +  +   TV++ TH  E
Sbjct: 131 GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE 190

Query: 67  EAR 69
           +A+
Sbjct: 191 DAK 193

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 49.8 bits (120), Expect = 3e-09
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG++ R++ A  L+ +P LL+LDEPT  +D    +++   L    K+   TVI+ +H
Sbjct: 73  GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL----KEYPGTVILVSH 125

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 50.8 bits (122), Expect = 3e-09
 Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A AL  +PE+L++DEPT  +DP+    I   + ++ KD   T++I TH ++
Sbjct: 149 GGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKD--YTIVIVTHNMQ 206

Query: 67  EA 68
           +A
Sbjct: 207 QA 208

Length = 250

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 27/69 (39%), Positives = 44/69 (63%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A  L  +P ++ILDE T  +DP  RQ++ + + ++  + N T+I  TH + 
Sbjct: 145 GGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS 204

Query: 67  EARQAHTVI 75
           EA +A  VI
Sbjct: 205 EAMEADHVI 213

Length = 269

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 50.6 bits (121), Expect = 4e-09
 Identities = 26/62 (41%), Positives = 36/62 (58%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL+  P++L+LDEP   +D  LR  +   L  I +    T +  TH  E
Sbjct: 103 GGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162

Query: 67  EA 68
           EA
Sbjct: 163 EA 164

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 50.4 bits (121), Expect = 4e-09
 Identities = 25/62 (40%), Positives = 39/62 (62%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL+H P LL+LDEP   +D L R  + + +  + +    TV++ TH + 
Sbjct: 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS 195

Query: 67  EA 68
           EA
Sbjct: 196 EA 197

Length = 257

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 50.7 bits (121), Expect = 5e-09
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL  +P++L+ DE T  +DP   QSI   L +I +    T+++ TH ++
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD 202

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 50.4 bits (121), Expect = 5e-09
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL  +P++L+LDEP   +D  +R+ +   L ++      T +  TH  E
Sbjct: 140 GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE 199

Query: 67  EAR 69
           EA 
Sbjct: 200 EAL 202

Length = 345

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.2 bits (120), Expect = 5e-09
 Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           +S  GGQQ+R+  A  L  +PE++++DEP   +DP+    I + +  + K+   TVII T
Sbjct: 148 LSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKE--YTVIIVT 205

Query: 63  HYIEEARQA 71
           H +++A + 
Sbjct: 206 HNMQQAARV 214

Length = 253

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 49.8 bits (119), Expect = 6e-09
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+H+P +LI DE T  +D     +I  ++  I     +TVII  H + 
Sbjct: 141 GGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLS 198

Query: 67  EARQAHTVI 75
             + A  +I
Sbjct: 199 TVKNADRII 207

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 49.7 bits (119), Expect = 6e-09
 Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 3/63 (4%)

Query: 1   MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
            E+S  GG+Q+RV+ A A+++ P +LI DEPT  +DP     I N L +I K G  TV++
Sbjct: 135 AELS--GGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGT-TVVV 191

Query: 61  TTH 63
            TH
Sbjct: 192 ATH 194

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.0 bits (119), Expect = 7e-09
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ+RRV+ A  +  D   L+LDEPT G+DP   +   N   ++ K+  K +I+ TH ++
Sbjct: 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD 212

Query: 67  EA-RQAHTVI 75
           +  R A  VI
Sbjct: 213 QVLRIADEVI 222

Length = 289

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.9 bits (119), Expect = 7e-09
 Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A  L  +PE+L+LDEPT  +DP     I   L+Q  + G+ T++I TH ++
Sbjct: 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI-EDLIQELR-GSYTIMIVTHNMQ 242

Query: 67  EA 68
           +A
Sbjct: 243 QA 244

Length = 286

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 49.9 bits (120), Expect = 7e-09
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
           G+Q+RV    AL     LLILDEPT  + P     ++  L ++  +G KT+I  TH ++E
Sbjct: 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEG-KTIIFITHKLKE 202

Query: 68  ARQ-AHTV 74
               A  V
Sbjct: 203 VMAIADRV 210

Length = 501

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 49.6 bits (118), Expect = 8e-09
 Identities = 21/62 (33%), Positives = 40/62 (64%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG ++RV  A AL  +P++L++DE    +DPL+R  + + LV++     +T++  +H ++
Sbjct: 167 GGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD 226

Query: 67  EA 68
           EA
Sbjct: 227 EA 228

Length = 400

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.2 bits (117), Expect = 1e-08
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           +S  GGQQ+RV  A  L   P++++LDEPT  +DP+    I N L+++      T+I+ T
Sbjct: 147 LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVT 204

Query: 63  HYIEEA 68
           H + +A
Sbjct: 205 HSMHQA 210

Length = 252

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 48.4 bits (116), Expect = 1e-08
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R+  A AL  +P +L+LDEP   +D    +++ N  +   K    T I+  H  E
Sbjct: 99  GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERAL-NQAIAALKAAGATRIVIAHRPE 157

Query: 67  EARQAHTVI 75
               A  ++
Sbjct: 158 TLASADRIL 166

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 47.3 bits (113), Expect = 1e-08
 Identities = 16/26 (61%), Positives = 22/26 (84%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPT 32
           GGQ++RV+ A AL+  P+LL+LDEPT
Sbjct: 93  GGQKQRVAIARALLKKPKLLLLDEPT 118

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 49.3 bits (117), Expect = 1e-08
 Identities = 23/72 (31%), Positives = 42/72 (58%)

Query: 4    SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
            S  GGQ++R++ A AL+ +P++L+LDE T  +D    + I   +V I    +KT+I   H
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417

Query: 64   YIEEARQAHTVI 75
             I   +++  ++
Sbjct: 1418 RIASIKRSDKIV 1429

Length = 1466

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A  L  DPE++++DEP   +DP+    I + + ++ ++   TV++ TH ++
Sbjct: 203 GGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE--YTVVVVTHNMQ 260

Query: 67  EA 68
           +A
Sbjct: 261 QA 262

Length = 305

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A  +  +P+++++DEPT  +DP+    I   + ++ K  N T++I TH ++
Sbjct: 148 GGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQ 205

Query: 67  EARQ 70
           +AR+
Sbjct: 206 QARR 209

Length = 249

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.0 bits (116), Expect = 1e-08
 Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A A+  +PE+L++DEPT  +DP+    I   ++++ K    ++II TH + 
Sbjct: 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMA 285

Query: 67  EARQ 70
           +A++
Sbjct: 286 QAQR 289

Length = 329

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 20/69 (28%), Positives = 36/69 (52%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R+  A AL  +P+L++ DEP   +D  ++  I N L  + ++   T +  +H + 
Sbjct: 112 GGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS 171

Query: 67  EARQAHTVI 75
             R     I
Sbjct: 172 VVRYISDRI 180

Length = 268

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 21/62 (33%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A  +   P+++++DEPT  +DP+    I + +V++ K+   T++I TH ++
Sbjct: 150 GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKE--YTIVIVTHNMQ 207

Query: 67  EA 68
           +A
Sbjct: 208 QA 209

Length = 251

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 25/66 (37%), Positives = 36/66 (54%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
           GQQR      AL+  P LLILDEP  G+DPL RQ +   +  +  +G   ++  +H+ E+
Sbjct: 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAED 464

Query: 68  ARQAHT 73
           A    T
Sbjct: 465 APACIT 470

Length = 490

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 22/62 (35%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A A+  DPE++++DEP   +DP+    I + + ++ ++   TV+I TH ++
Sbjct: 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE--YTVVIVTHNMQ 240

Query: 67  EA 68
           +A
Sbjct: 241 QA 242

Length = 285

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
            GQ +R++ A AL+   +LL+LDEPT  +D    Q +   L   ++   +T ++ TH +E
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRR--QTTLMVTHQLE 545

Query: 67  EARQAHTV 74
           +  Q   +
Sbjct: 546 DLAQWDQI 553

Length = 588

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A A+   P++L++DEP   +DP+    +   + ++ K  N T+II TH ++
Sbjct: 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVTHNMQ 223

Query: 67  EARQA 71
           +A +A
Sbjct: 224 QAARA 228

Length = 267

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+  P +LILDE T  +D    Q     L +     ++TV++  H + 
Sbjct: 620 GGQKQRIAIARALVRKPRVLILDEATSALDAECEQL----LQESRSRASRTVLLIAHRLS 675

Query: 67  EARQAHTVI 75
              +A  ++
Sbjct: 676 TVERADQIL 684

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 48.4 bits (116), Expect = 2e-08
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A A+++ P++L+LDE    +D  LR+ + N L  + +    T +  TH  E
Sbjct: 147 GGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE 206

Query: 67  EA 68
           EA
Sbjct: 207 EA 208

Length = 375

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A AL   PE+L++DEPT  +DP+    I   L+   K    T++I TH ++
Sbjct: 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKI-EELITELKK-KYTIVIVTHNMQ 209

Query: 67  EA 68
           +A
Sbjct: 210 QA 211

Length = 253

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A A+   P +L++DEP   +DP+    I N L+Q  K  N T+I+ TH ++
Sbjct: 152 GGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIEN-LIQELKK-NFTIIVVTHSMK 209

Query: 67  EARQ 70
           +A++
Sbjct: 210 QAKK 213

Length = 251

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.1 bits (114), Expect = 3e-08
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A AL  +PE+L++DEPT  +DP     I + +  + K    T+II TH + 
Sbjct: 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNMH 208

Query: 67  EA 68
           +A
Sbjct: 209 QA 210

Length = 252

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 1   MEISSRG-----GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGN 55
           M+I  RG     GQ++ V+ A AL+ DP +L+LDEPT  +D    +   + L +      
Sbjct: 593 MQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAG-- 650

Query: 56  KTVIITTH 63
           KT+++ TH
Sbjct: 651 KTLVLVTH 658

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.1 bits (114), Expect = 3e-08
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A AL   P+LL+LDEPT  +DP+    I   L +++   N ++I+ TH ++
Sbjct: 145 GGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNMQ 202

Query: 67  EARQ 70
           + ++
Sbjct: 203 QGKR 206

Length = 246

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.7 bits (113), Expect = 4e-08
 Identities = 23/66 (34%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           +S  GGQQ+R+  A  L   P++++ DEPT  +DP+    I + ++ + KD   T++I T
Sbjct: 153 LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKD--YTIVIVT 210

Query: 63  HYIEEA 68
           H +++A
Sbjct: 211 HNMQQA 216

Length = 258

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 47.8 bits (113), Expect = 4e-08
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 2   EISSRGGQQRRVSFAVALMHDPE---LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTV 58
            IS   G +R ++  +AL+       LL++DEP  G+ P L + +   L++   +    +
Sbjct: 189 GISD--GTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVE-LLKELSEKGAQL 245

Query: 59  IITTH 63
           I TTH
Sbjct: 246 IFTTH 250

Length = 256

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 47.8 bits (114), Expect = 4e-08
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 6   RGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI 65
            GGQ++R++ A AL+ +P +LILDE T  +D      I + L ++ K   +T +I  H +
Sbjct: 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRL 524

Query: 66  EEARQAHTVI 75
              + A  +I
Sbjct: 525 STIKNADRII 534

Length = 567

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 47.7 bits (113), Expect = 5e-08
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           +S  GGQQ+R+  A  L   P +L+LDEP   +DP+    I   + ++ ++   ++II T
Sbjct: 163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEE--YSIIIVT 220

Query: 63  HYIEEA 68
           H +++A
Sbjct: 221 HNMQQA 226

Length = 268

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 47.4 bits (113), Expect = 5e-08
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG ++RV  A+AL+  P+LLI DEPT  +D  ++  I   L ++ ++ N  +I+ TH
Sbjct: 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220

Length = 330

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 47.5 bits (113), Expect = 5e-08
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL   P++++ DE T  +DP L   + N + ++  + + T+++ TH   
Sbjct: 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTH--- 205

Query: 67  EARQAHTVID 76
           E   A    D
Sbjct: 206 EMGFAREFAD 215

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 47.3 bits (112), Expect = 6e-08
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 8/72 (11%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVIITT 62
           GGQ++R+S A A++ +P++LILDE T  +D     L++++I N    +  + N+  II  
Sbjct: 582 GGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN----LKGNENRITIIIA 637

Query: 63  HYIEEARQAHTV 74
           H +   R A+T+
Sbjct: 638 HRLSTIRYANTI 649

Length = 1466

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 47.2 bits (113), Expect = 6e-08
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG +RRV+ A AL+ +P+LL+LDEPT  +D    +SI   L    K    TVI+ +H
Sbjct: 156 GGWRRRVALARALLEEPDLLLLDEPTNHLD---LESI-EWLEDYLKRYPGTVIVVSH 208

Length = 530

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 47.2 bits (112), Expect = 7e-08
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 4   SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           S  GG++RRV  A AL  +P+ ++LDEP  GVDP+    I   +++  +D    V+IT H
Sbjct: 137 SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI-KRIIEHLRDSGLGVLITDH 195

Query: 64  YIEE 67
            + E
Sbjct: 196 NVRE 199

Length = 241

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 47.1 bits (112), Expect = 7e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A +L   P+LL+LDEP   +D  LR  +   +V I +    T ++ TH  E
Sbjct: 152 GGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE 211

Query: 67  EA 68
           EA
Sbjct: 212 EA 213

Length = 377

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 47.2 bits (112), Expect = 7e-08
 Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A  L  +P+++++DEPT  +DP+    +   LVQ  K  + ++II TH ++
Sbjct: 170 GGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKV-EELVQELKK-DYSIIIVTHNMQ 227

Query: 67  EA 68
           +A
Sbjct: 228 QA 229

Length = 271

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.9 bits (111), Expect = 7e-08
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A A+   P +L++DEP   +DP+    +   + ++ KD   T++I TH ++
Sbjct: 149 GGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKD--YTIVIVTHNMQ 206

Query: 67  EA 68
           +A
Sbjct: 207 QA 208

Length = 250

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 46.8 bits (112), Expect = 7e-08
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 10/73 (13%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVIITT 62
           GGQ++R++ A AL+ DP +LILDE T  +D     L++ ++   L++     N+T  +  
Sbjct: 141 GGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL-ERLMK-----NRTTFVIA 194

Query: 63  HYIEEARQAHTVI 75
           H +     A  ++
Sbjct: 195 HRLSTIENADRIV 207

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.9 bits (111), Expect = 7e-08
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A AL   P++++LDEPT  +DP+    I   L+++      T I+ TH ++
Sbjct: 150 GGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ--YTFIMVTHNLQ 207

Query: 67  EA 68
           +A
Sbjct: 208 QA 209

Length = 251

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 46.7 bits (111), Expect = 8e-08
 Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GQ++RV+ A  L  DP++++LDEP   +DP  ++++   L ++   G KTVI+ TH
Sbjct: 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG-KTVIVATH 196

Length = 274

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 2/66 (3%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           +S  GGQQ+R+  A AL  +P++L++DEPT  +DP+  + I   L+   K+   T++I T
Sbjct: 154 LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKI-EELILKLKE-KYTIVIVT 211

Query: 63  HYIEEA 68
           H +++A
Sbjct: 212 HNMQQA 217

Length = 259

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 46.5 bits (110), Expect = 1e-07
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A ALM   ++++ DEP   +DP   + + + L  I ++   TV++T H ++
Sbjct: 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD 214

Query: 67  EA----------RQAHTVID 76
            A          RQ H   D
Sbjct: 215 YALRYCERIVALRQGHVFYD 234

Length = 262

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG+++RVS A  ++ +P LLILDEPT G+D      +   L  + + G KT++ + H
Sbjct: 209 GGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKG-KTIVTSMH 264

Length = 659

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++RV+   AL+  PELL++DEP   +D   ++ I  +L ++  + N  ++  +H ++
Sbjct: 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD 190

Query: 67  E-ARQAHTVI 75
           E  R A  V+
Sbjct: 191 EVLRLADRVV 200

Length = 352

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV  A  L   P++++LDEPT  +DP+    I   L+ +  D   T+++ T  ++
Sbjct: 151 GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDD--YTMLLVTRSMQ 208

Query: 67  EA 68
           +A
Sbjct: 209 QA 210

Length = 252

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV  A AL   P +L+LDEP  G+D   ++ +    +++   G   +++TTH + 
Sbjct: 116 GGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT-AILMTTHDLA 174

Query: 67  EA 68
           +A
Sbjct: 175 QA 176

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++ +S  +A +H P++L+LDE T  +DP   + +     +I ++   T ++ TH +E
Sbjct: 151 GGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME 210

Query: 67  EA 68
           +A
Sbjct: 211 DA 212

Length = 263

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 20/57 (35%), Positives = 37/57 (64%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++RV+ A AL+H P+L++ DEPT  +D    + +   + ++ ++   T++I TH
Sbjct: 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH 200

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 23/62 (37%), Positives = 39/62 (62%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL  +P++L+LDEP   +D  +R+ +   L ++  + + T +  TH  E
Sbjct: 139 GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE 198

Query: 67  EA 68
           EA
Sbjct: 199 EA 200

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
           GGQ++R++ A AL  DP+L++LDEP   +D    Q++ N +  +   G   V+IT
Sbjct: 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVIT 511

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 7/68 (10%)

Query: 1   MEISSRG-----GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGN 55
           ++I  RG     GQ++ V+ A AL++DP +L+LDEPT  +D    + +   L Q+  D  
Sbjct: 132 LQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-- 189

Query: 56  KTVIITTH 63
           KT+II TH
Sbjct: 190 KTLIIITH 197

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 19/48 (39%), Positives = 34/48 (70%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG 54
           GG+Q+ ++   ALM  P LL+LDEP++G+ P++ Q I++ + Q+ + G
Sbjct: 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG 187

Length = 237

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG 54
           GG Q++V+ A  LM  P++LILDEPT GVD   ++ I+  + Q   +G
Sbjct: 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEG 445

Length = 501

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++R+  A AL   P++L++DEPT  +DP+    I   L ++ K+   T+++ TH
Sbjct: 152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE--YTIVLVTH 206

Length = 253

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 21/57 (36%), Positives = 36/57 (63%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++RV  A+AL ++P+LLI DEPT  +D  ++  I + L ++  +    ++  TH
Sbjct: 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITH 216

Length = 534

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 36/61 (59%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A A+   P+++ILDE T  +DP  R  +   +  I  D   TVI  TH ++
Sbjct: 143 GGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD 202

Query: 67  E 67
           E
Sbjct: 203 E 203

Length = 279

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           +S  GGQQ+R+  A  L  +P ++++DEPT  +DP+    I   ++ + +  + T+II T
Sbjct: 149 LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVT 206

Query: 63  HYIEEA 68
           H +++A
Sbjct: 207 HNMQQA 212

Length = 254

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 45.3 bits (108), Expect = 2e-07
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
           G+++ ++ A A++ DP++LILDE T  +D    + I   L ++ K   +T II  H +  
Sbjct: 143 GERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTSIIIAHRLST 200

Query: 68  ARQAHTVI 75
            + A  ++
Sbjct: 201 IKNADKIL 208

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 18/57 (31%), Positives = 37/57 (64%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
            G++ RV+ A  L+ +P ++ILDEPT  +DP+ +  + + +++  ++  +T II +H
Sbjct: 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSH 486

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.4 bits (107), Expect = 3e-07
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GQ++RV+ A AL+     L+LDEPT G+DP  R  +   + +I   GN  VII++H I+
Sbjct: 140 GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH-VIISSHDID 197

Length = 271

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 24/78 (30%), Positives = 51/78 (65%), Gaps = 2/78 (2%)

Query: 2   EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
           E+S  GG+++RV+ A AL++ P L++ DEPT  +D    + I++ ++++ ++ N + ++ 
Sbjct: 141 ELS--GGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVV 198

Query: 62  THYIEEARQAHTVIDNYD 79
           TH +E A++   V++  D
Sbjct: 199 THDLELAKKLDRVLEMKD 216

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 45.2 bits (107), Expect = 3e-07
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL+ +P++LILDE T  +D    Q +   L    +   +TV++  H + 
Sbjct: 153 GGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLS 210

Query: 67  EARQAHTVI 75
              +A  ++
Sbjct: 211 TVERADQIL 219

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 45.2 bits (107), Expect = 3e-07
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL  +P++L+LDEP   +D  +R+ + + L ++  + + T +  TH  E
Sbjct: 133 GGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE 192

Query: 67  EA 68
           EA
Sbjct: 193 EA 194

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG  +RV  A+A+   P+LLI DEPT  +D  ++  I   L+++ +  N  +++ TH + 
Sbjct: 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA 215

Query: 67  -EARQAHTVIDNY 78
             A  AH +I  Y
Sbjct: 216 LVAEAAHKIIVMY 228

Length = 326

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 44.6 bits (106), Expect = 4e-07
 Identities = 22/62 (35%), Positives = 41/62 (66%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A  L+ +  +L+LDEP   +DP LRQ +   + Q+ ++   T+++ +H +E
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE 191

Query: 67  EA 68
           +A
Sbjct: 192 DA 193

Length = 232

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.6 bits (105), Expect = 5e-07
 Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A  +   PE++++DEP   +DP+    I + + ++ +D   T++I TH ++
Sbjct: 149 GGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKED--YTIVIVTHNMQ 206

Query: 67  EA 68
           +A
Sbjct: 207 QA 208

Length = 250

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 44.6 bits (105), Expect = 6e-07
 Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-GNKTVIITTHYI 65
           GG Q+R++ A A+  +P++L+LDEP   +D  +R ++   +  + ++    T++  TH  
Sbjct: 140 GGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ 199

Query: 66  EEA 68
           ++A
Sbjct: 200 DDA 202

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.3 bits (104), Expect = 6e-07
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+ +  A  L  +PE+L+LDEPT  +DP   + I   +  +      TVII TH + 
Sbjct: 166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLA 223

Query: 67  EA 68
           +A
Sbjct: 224 QA 225

Length = 276

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 44.3 bits (105), Expect = 6e-07
 Identities = 21/57 (36%), Positives = 40/57 (70%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG+ +RV  A AL++ P+LL+LDEPT GVD   + ++++ + Q+ ++ +  V++ +H
Sbjct: 123 GGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSH 179

Length = 251

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 44.4 bits (105), Expect = 7e-07
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++RV  A  L  +P L + DEPT  +DP   + + N L +  K    ++++T+H+ E
Sbjct: 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.3 bits (104), Expect = 8e-07
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A  L  +PE++++DEP   +DP+    I   L+Q  K  N T+ I TH ++
Sbjct: 150 GGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRI-EELMQELKQ-NYTIAIVTHNMQ 207

Query: 67  EARQA 71
           +A +A
Sbjct: 208 QAARA 212

Length = 251

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG++ R+  A  L+  P LL+LDEPT  +D    ++    L +   D   TV++ +H
Sbjct: 442 GGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA----LEEALLDFEGTVLLVSH 494

Length = 530

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 8/70 (11%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++RV+ A A++ +P +L+LDE T  +D    + I   L  ++K   +T I+  H + 
Sbjct: 140 GGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRL- 196

Query: 67  EARQAHTVID 76
                 T+++
Sbjct: 197 -----STIVN 201

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 19/59 (32%), Positives = 38/59 (64%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           G+ ++V  A+AL + P LLI DEPT  ++P  +  I+  L ++ ++ N T+++ +H ++
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ 220

Length = 330

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A  +   PE+L+LDEP   +DP+    I   L+   K  + TV+I TH ++
Sbjct: 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRI-EELITELKQ-DYTVVIVTHNMQ 216

Query: 67  EA 68
           +A
Sbjct: 217 QA 218

Length = 260

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG Q++V  A  L   P+LLI+DEPT GVD   R  I+  +  I    N  V+  +  +E
Sbjct: 406 GGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLE 464

Query: 67  EARQ 70
           E  Q
Sbjct: 465 EIEQ 468

Length = 510

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.5 bits (102), Expect = 1e-06
 Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A A+   P++L++DEP   +DP+  + +    +++ +    T+I+ TH ++
Sbjct: 164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQ 221

Query: 67  EA 68
           +A
Sbjct: 222 QA 223

Length = 274

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 2   EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
           +IS  GGQQ+RV+ A AL+  P++L+ DEP   +D  LR+S+   + ++ +  N T +  
Sbjct: 136 QIS--GGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYV 193

Query: 62  THYIEEA 68
           TH   EA
Sbjct: 194 THDQSEA 200

Length = 351

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.5 bits (102), Expect = 1e-06
 Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNK-TVIITTH 63
           GGQQ+R+  A AL   P++L++DEP  G+DP+    +   L+Q  +  ++ T++I +H
Sbjct: 153 GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKV-ESLIQSLRLRSELTMVIVSH 209

Length = 261

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A A+  +PE+L+LDEPT  +DP+    I   L+   K    T++I TH ++
Sbjct: 171 GGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI-EELITELKS-KYTIVIVTHNMQ 228

Query: 67  EA 68
           +A
Sbjct: 229 QA 230

Length = 272

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++R+S A AL+ + E+LILD+    VD      I ++L Q  +   +TVII+ H
Sbjct: 454 GGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAH 508

Length = 569

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.5 bits (102), Expect = 1e-06
 Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 1   MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
           ME+S  GGQQ+R+  A  +   PE++++DEP   +DP+    I   + ++ +    T+II
Sbjct: 147 MELS--GGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIII 202

Query: 61  TTHYIEEA 68
            TH +++A
Sbjct: 203 VTHNMQQA 210

Length = 252

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 4   SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           S  GGQQ+R+  A  +  +PE++++DEP   +DP+    I   + ++ K  N T++I TH
Sbjct: 154 SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTH 211

Query: 64  YIEEA 68
            +++A
Sbjct: 212 NMQQA 216

Length = 269

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 43.2 bits (102), Expect = 2e-06
 Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 2/66 (3%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           +S  GGQQ+R+  A A+   PE++++DEP   +DP+    I   + ++ +    T+II T
Sbjct: 150 LSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ--YTIIIVT 207

Query: 63  HYIEEA 68
           H +++A
Sbjct: 208 HNMQQA 213

Length = 264

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R   A+ L  D  +++LDEPT  +D +  Q     L++      KTV+   H + 
Sbjct: 141 GGQRQRAFLAMVLAQDTPVVLLDEPTTYLD-INHQVELMRLMRELNTQGKTVVTVLHDLN 199

Query: 67  EA 68
           +A
Sbjct: 200 QA 201

Length = 255

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.2 bits (101), Expect = 2e-06
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A  +   PE++ILDE T  +DP  RQ I   + +I +    TV+  TH ++
Sbjct: 143 GGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202

Query: 67  EARQAHTVI 75
           EA  +  ++
Sbjct: 203 EAASSDRIL 211

Length = 277

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL  +P++L+LDEP   +D  +R+ +   L Q+ ++   T +  TH  E
Sbjct: 139 GGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE 198

Query: 67  EA 68
           EA
Sbjct: 199 EA 200

Length = 353

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++RV  A+AL+  PELLI DEPT  +D  ++  I   L ++ ++ N  ++  TH + 
Sbjct: 159 GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS 218

Query: 67  EARQ-AHTV 74
             R+ A  V
Sbjct: 219 IVRKLADRV 227

Length = 529

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 19/56 (33%), Positives = 36/56 (64%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           G+ ++V  A+AL + P LLI DEPT  ++P  +  I+  L ++ ++ N T+++ +H
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217

Length = 330

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 42.6 bits (101), Expect = 3e-06
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
           GGQ++R++ A AL  DP L++LDEP   +D     ++   ++     G   V+I 
Sbjct: 475 GGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIA 529

Length = 580

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 21/62 (33%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A A+  +P++L++DEP   +DP+   +I + + ++ +D   T++I TH ++
Sbjct: 151 GGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQD--YTIVIVTHNMQ 208

Query: 67  EA 68
           +A
Sbjct: 209 QA 210

Length = 258

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 42.5 bits (101), Expect = 3e-06
 Identities = 22/64 (34%), Positives = 40/64 (62%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL  +P++L+ DE T  +DP   +SI   L  I ++   T+++ TH ++
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD 202

Query: 67  EARQ 70
             ++
Sbjct: 203 VVKR 206

Length = 343

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.3 bits (99), Expect = 3e-06
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ + V+ A  L  +PE LI DE T  +DP    ++   + ++ + G KT++  TH +E
Sbjct: 139 GGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKG-KTIVYITHNLE 197

Query: 67  EARQAHTVI 75
           E   A  +I
Sbjct: 198 ELHDADRII 206

Length = 274

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (6%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG---NKTVI 59
           ++  GGQ++RVS A A+  + ++ + D+P   VD  + + I+ H+  I  +G   NKT I
Sbjct: 759 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV--IGPEGVLKNKTRI 816

Query: 60  ITTHYIEEARQAHTVI 75
           + TH I    Q   +I
Sbjct: 817 LVTHGISYLPQVDVII 832

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++R++    L   P++L+LDE T  +D   +++I   + +  ++ N  V+  TH  +
Sbjct: 136 GGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD 195

Query: 67  EA-RQAHTVI 75
           +A R A  VI
Sbjct: 196 QAIRHADKVI 205

Length = 223

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 41.8 bits (99), Expect = 4e-06
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 7/58 (12%)

Query: 9   QQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITK---DGNKTVIITTH 63
           Q++R++  V L   P +L LDEPT G+D    Q+ +N +V+  K   D  + ++ T H
Sbjct: 113 QRKRLTIGVELAAKPSILFLDEPTSGLDS---QAAYN-IVRFLKKLADSGQAILCTIH 166

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 41.8 bits (99), Expect = 4e-06
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 9/60 (15%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVIITTH 63
           GQ+RRV+ A  L+ +  + ILDEPT  +D     L  + I  HL          VI  TH
Sbjct: 131 GQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL-----AQGGIVIAATH 185

Length = 207

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 42.0 bits (99), Expect = 5e-06
 Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++RV+   AL+  P LL++DEP   +D   +  I  +L ++  +    ++  +H ++
Sbjct: 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ 193

Query: 67  E-ARQAHTVI 75
           E  R A  V+
Sbjct: 194 EVLRLADRVV 203

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.0 bits (98), Expect = 5e-06
 Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R++ A AL   P++L++DEPT  +D +  Q+I   + ++  +    ++I +H  +
Sbjct: 156 GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQ 213

Query: 67  EA 68
           + 
Sbjct: 214 QV 215

Length = 257

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 41.6 bits (98), Expect = 5e-06
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG+Q+RV+ A A    P++L  DEPT  +D      I + L  + ++   T+++ TH
Sbjct: 149 GGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTH 205

Length = 228

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 41.7 bits (98), Expect = 5e-06
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GQQRRV+ A  L+    L ILDEPT  +D          +      G   V++TTH
Sbjct: 129 GQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGG-MVVLTTH 183

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 41.6 bits (98), Expect = 6e-06
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
           GGQ++R++ A AL+  P L+ILDEPT  +D
Sbjct: 428 GGQRQRIAIARALILKPSLIILDEPTSSLD 457

Length = 529

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 41.4 bits (97), Expect = 6e-06
 Identities = 20/70 (28%), Positives = 33/70 (47%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ+ RV+   AL+  P+ L+LDEP   +D  LR      +    +      +  TH ++
Sbjct: 137 GGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196

Query: 67  EARQAHTVID 76
           +      VI+
Sbjct: 197 DVPAGSRVIE 206

Length = 213

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 41.5 bits (98), Expect = 7e-06
 Identities = 19/54 (35%), Positives = 33/54 (61%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
           GG Q++   A  L+ +P++LILDEPT G+D   +  I+  + Q+ + G   ++I
Sbjct: 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVI 461

Length = 506

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 41.4 bits (97), Expect = 7e-06
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++RV  A A+    ++++LDEP  GVD      I + L ++  +G KT++++TH
Sbjct: 145 GGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEG-KTMLVSTH 200

Length = 272

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 41.3 bits (97), Expect = 7e-06
 Identities = 20/60 (33%), Positives = 36/60 (60%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG Q++   A  L+ +P +LILDEPT GVD   +  I+  + Q+ ++G   +++++   E
Sbjct: 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAE 465

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 41.3 bits (97), Expect = 8e-06
 Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A A+   PE++++DEP   +DP+    +   + ++    N T++I TH ++
Sbjct: 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR--QNYTIVIVTHSMQ 223

Query: 67  EA 68
           +A
Sbjct: 224 QA 225

Length = 267

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 41.3 bits (98), Expect = 9e-06
 Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
             Q++ V  A AL  D  +LILDEPT  +     + +++ + ++   G   +I  +H ++
Sbjct: 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQG-VAIIYISHRLD 206

Query: 67  EARQ 70
           E  +
Sbjct: 207 EVFE 210

Length = 500

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 6/78 (7%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           +   GGQ++R++ A AL+ D  +LILDE T  +D    ++I   L ++ K  N+T ++  
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIA 536

Query: 63  H---YIEEARQAHTVIDN 77
           H    IE+A +   V+++
Sbjct: 537 HRLSTIEKADEI-LVVED 553

Length = 582

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 9/60 (15%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVIITTH 63
           GQQRR++ A   +    L ILDEPT  +D     LL   +  HL +        V++TTH
Sbjct: 131 GQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR-----GGIVLLTTH 185

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG Q+R+  A  L+  P L+ +DEPT G+D  ++  + + L  + +D    VII TH + 
Sbjct: 151 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG 210

Query: 67  EAR 69
            AR
Sbjct: 211 VAR 213

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 40.6 bits (96), Expect = 1e-05
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 8   GQQRRVSFAVALMHDPELLILDEP-----TVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           GQQRRV+ A   +    L ILDEP       GV  L        L Q  + G   VI+TT
Sbjct: 133 GQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEA-----LLAQHAEQGG-MVILTT 186

Query: 63  H 63
           H
Sbjct: 187 H 187

Length = 204

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R+  A AL   P++L++DEP   +DP+    +   +  +  +   T+ I TH ++
Sbjct: 153 GGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE--LTIAIVTHNMQ 210

Query: 67  EA 68
           +A
Sbjct: 211 QA 212

Length = 259

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 4   SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           S  GG Q++V     L+  PE+L+LDEPT G+D   +  I+  + ++ K     +II++
Sbjct: 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISS 449

Length = 491

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQIT 51
           GG+Q+R++FA  L+H P+ + LDE T  +D      L Q +   L   T
Sbjct: 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDAT 566

Length = 604

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 20/53 (37%), Positives = 30/53 (56%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
           G+ R+     ALM +P+LLILDEP  G+D   RQ +   L  + + G   V++
Sbjct: 139 GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLV 191

Length = 490

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 19/56 (33%), Positives = 34/56 (60%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GQQRR+  A  ++  PE+L+LDEP  G++P   + +   + ++  + N TV++  H
Sbjct: 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEH 212

Length = 255

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI 43
           GG+Q+RV+ A   + D  +L+LDEPT  +D   RQ +
Sbjct: 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVV 188

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 39.8 bits (94), Expect = 2e-05
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDP 37
           GG+Q+R++FA  L+H P+ + LDE T  +D 
Sbjct: 94  GGEQQRLAFARLLLHKPKFVFLDEATSALDE 124

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 39.8 bits (94), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 8/72 (11%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD---GNKTVIITTH 63
           GGQ++R++ A AL+ +P++L+LDE T  +D    +S    LVQ   D     +T I+  H
Sbjct: 142 GGQKQRIAIARALLRNPKILLLDEATSALD---AES--EKLVQEALDRAMKGRTTIVIAH 196

Query: 64  YIEEARQAHTVI 75
            +   R A  + 
Sbjct: 197 RLSTIRNADLIA 208

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH---Y 64
           GQ++R++  +AL+ + ++L+LDE     DP  R+  +  L+ + K+  KT+   +H   Y
Sbjct: 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY 511

Query: 65  IEEARQ 70
              A +
Sbjct: 512 FIHADR 517

Length = 546

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPL 38
           GG  RR + A A+  +P+L++ DEP VG DP+
Sbjct: 146 GGMARRAALARAIALEPDLIMFDEPFVGQDPI 177

Length = 269

>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 11/73 (15%)

Query: 2   EISSRG-GQQRRVSFAVALM----------HDPELLILDEPTVGVDPLLRQSIWNHLVQI 50
            +  R  G    + F++ +               +L++DEP   + P L++ +   L ++
Sbjct: 243 PLEQRSLGFNNLIYFSLFINFIRNRSSSKNLKNIILLIDEPEAHLHPTLQKELIRFLKKL 302

Query: 51  TKDGNKTVIITTH 63
            K  NK +IITTH
Sbjct: 303 AKKNNKQIIITTH 315

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 320

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 10/60 (16%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI-W--NHLVQITKDGNKTVIITTH 63
           GG++RRV+    L+  P++L+LDEPT  +D    +S+ W   HL +       TV+  TH
Sbjct: 164 GGERRRVALCRLLLSKPDMLLLDEPTNHLDA---ESVAWLEQHLQEYP----GTVVAVTH 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 6/58 (10%)

Query: 9   QQRRVSFAVALMHDPELLI-LDEPTVGVDPLLRQSIWN--HLVQITKDGNKTVIITTH 63
           Q++R++  V L+  P+LL+ LDEPT G+D    Q+ W+   L++   D  + ++ T H
Sbjct: 906 QRKRLTIGVELVAKPKLLLFLDEPTSGLDS---QTAWSICKLMRKLADHGQAILCTIH 960

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG+Q+RV+ A A    P++L  DEPT  +D      I + L  + ++   T+I+ TH
Sbjct: 149 GGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTH 205

Length = 228

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 39.2 bits (92), Expect = 3e-05
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQ-ITKDGNKTVIITTH 63
           GQQRRV+ A   +    L ILDEP   +D      +   +     + G   V++TTH
Sbjct: 134 GQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGG--IVLLTTH 188

Length = 209

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 9    QQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
            Q++R++ AV L+ +P ++ +DEPT G+D     +I    V+ T D  +TV+ T H
Sbjct: 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIH 1077

Length = 1470

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 39.6 bits (93), Expect = 3e-05
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
           GGQ++R++ A ALM DP++++ DEP   +D
Sbjct: 157 GGQRQRIAIARALMLDPDVVVADEPVSALD 186

Length = 327

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 20/66 (30%), Positives = 40/66 (60%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++RV+ A AL+++P L++ DEPT  +D     SI+  L ++ +      ++ TH ++
Sbjct: 148 GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207

Query: 67  EARQAH 72
            A++  
Sbjct: 208 LAKRMS 213

Length = 233

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 39.1 bits (91), Expect = 4e-05
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           I   GG+Q+RV  A A+++ P +L+ DEPT  +D  L + I     +  + G  TV++ T
Sbjct: 136 IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG-VTVLMAT 194

Query: 63  H 63
           H
Sbjct: 195 H 195

Length = 222

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 38.9 bits (90), Expect = 4e-05
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 4   SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDP-----LLRQSIWNHLVQITKDGNKTV 58
           S  G  + R++ A+A    P++LILDE T  +D      LL       L+ +  + N TV
Sbjct: 60  SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTV 119

Query: 59  IITTHYIEEARQAHTVI 75
           I+TT+  ++   A    
Sbjct: 120 ILTTNDEKDLGPALLRR 136

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 39.2 bits (91), Expect = 4e-05
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH---Y 64
           GQQ+R++   A + D  +L+ DE     DP  ++  +  L+   K   KT+II +H   Y
Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY 533

Query: 65  IEEARQ 70
            E A Q
Sbjct: 534 FELADQ 539

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 12/41 (29%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHL 47
           GG  R+ +   AL+ +P++L+LDEPT            NHL
Sbjct: 159 GGWLRKAALGRALVSNPDVLLLDEPT------------NHL 187

Length = 635

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 38.7 bits (91), Expect = 5e-05
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 9/62 (14%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVD----PLLRQSIWNHLVQITKDGNKTVIITT 62
           GG+++R      L+ +P+L ILDEP  G+D     L+ + I N L    ++  K+V+I T
Sbjct: 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI-NKL----REEGKSVLIIT 161

Query: 63  HY 64
           HY
Sbjct: 162 HY 163

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 39.0 bits (91), Expect = 6e-05
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 15/68 (22%)

Query: 7   GGQQRRVSFAVAL--------MHDPELLILDEPTVGVDPLLRQSIWNHLVQI---TKDGN 55
           GG++   S A+ L            ELL LDEP   +D    +     L +I        
Sbjct: 818 GGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEK----LAEILEELLSDG 873

Query: 56  KTVIITTH 63
           + +II +H
Sbjct: 874 RQIIIISH 881

Length = 908

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 38.8 bits (91), Expect = 7e-05
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+  PEL++LDEPT  +D  ++  + + L  + +    + +  +H + 
Sbjct: 429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA 488

Query: 67  EARQ-AHTVI 75
             R   H VI
Sbjct: 489 VVRALCHRVI 498

Length = 534

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 38.7 bits (90), Expect = 7e-05
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           I+  GGQ+ R+S A A+  D +L +LD P   +D    + I+   V      NKT I+ T
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV-CKLMANKTRILVT 216

Query: 63  HYIEEARQAHTVI 75
             +E  ++A  ++
Sbjct: 217 SKMEHLKKADKIL 229

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 38.3 bits (90), Expect = 8e-05
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 4   SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           SS  G + R++FA+A   +P++L++DE     D   ++     L ++ K G KTVI+ +H
Sbjct: 144 SS--GMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG-KTVILVSH 200

Query: 64  YIEEARQ 70
                ++
Sbjct: 201 DPSSIKR 207

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 38.6 bits (90), Expect = 8e-05
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG Q+R+  A  L+  P L+ +DEPT G+D  ++  + + L  + ++    V+I TH + 
Sbjct: 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA 213

Query: 67  EAR 69
            AR
Sbjct: 214 VAR 216

Length = 258

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG Q++V  +  L   PE++I DEPT G+D   +  I+  + Q+  DG K +++ +  + 
Sbjct: 412 GGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDG-KVILMVSSELP 470

Query: 67  E 67
           E
Sbjct: 471 E 471

Length = 510

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++R++ A A++ D  +L+LDE T  +D    Q +   L  + K   +T +I  H
Sbjct: 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKG--RTTLIIAH 533

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++RV+ A  ++ +P +LILDE T  +D    Q+I   L +++    +T ++  H + 
Sbjct: 402 GGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLS 459

Query: 67  EARQAHTVI 75
               A  +I
Sbjct: 460 TIIDADEII 468

Length = 497

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64
           GG+++R      L+ +P+L ILDEP  G+D +    I    +   ++  + V+I THY
Sbjct: 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLD-IDALKIVAEGINALREEGRGVLIITHY 203

Length = 251

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI 43
           GGQ++R+  A AL+ +P +LILDE T  +DP   + I
Sbjct: 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 21/57 (36%), Positives = 32/57 (56%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG ++RV  A+AL   P +LI DEPT  +D  ++  I   +  + K+ +  VI  TH
Sbjct: 171 GGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITH 227

Length = 623

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 20/65 (30%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHL----V----QITKDGNKTV 58
           GG++RRV+    L+  P++L+LDEPT            NHL    V    Q   D   TV
Sbjct: 166 GGERRRVALCRLLLEKPDMLLLDEPT------------NHLDAESVAWLEQFLHDYPGTV 213

Query: 59  IITTH 63
           +  TH
Sbjct: 214 VAVTH 218

Length = 556

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG+++R++ A    H P+  ILDE T  V   +   ++       ++   T+   +H
Sbjct: 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC----REFGITLFSVSH 637

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 7   GGQQRRV--SFAVALMHDPE--LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           GG++     +  +AL       L ILDE   G+DP   Q++   +++    G   VI+ T
Sbjct: 80  GGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGA-QVIVIT 138

Query: 63  HYIEEARQAHTVID 76
           H  E A  A  +I 
Sbjct: 139 HLPELAELADKLIH 152

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R   A+ L  D + ++LDEP   +D      I   L ++  +  KT+++  H I 
Sbjct: 138 GGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197

Query: 67  EA 68
            A
Sbjct: 198 FA 199

Length = 252

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           I+  GGQ+ R+S A A+  D +L +LD P   +D +  + I+   +      NKT I+ T
Sbjct: 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL-CKLMSNKTRILVT 605

Query: 63  HYIEEARQAHTVI 75
             +E  ++A  ++
Sbjct: 606 SKLEHLKKADKIL 618

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ +R++ A AL   P+L++LDE    +D +L+  I   L ++ +      +  TH
Sbjct: 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITH 209

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 36.5 bits (84), Expect = 4e-04
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 9/78 (11%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQ-----ITKDGNKT 57
           I+  GGQ++R+  A AL  +  ++ LD+P   +D  L     +HL+Q       +D  +T
Sbjct: 139 INLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLS----DHLMQEGILKFLQDDKRT 194

Query: 58  VIITTHYIEEARQAHTVI 75
           +++ TH ++    A  +I
Sbjct: 195 LVLVTHKLQYLPHADWII 212

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 8/59 (13%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIW--NHLVQITKDGNKTVIITTH 63
           GG + R++ A AL  +P+LL+LDEPT  +D  L   +W   +L++      KT I+ +H
Sbjct: 347 GGWRMRIALARALFIEPDLLLLDEPTNHLD--LHAVLWLETYLLKWP----KTFIVVSH 399

Length = 718

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 36.3 bits (85), Expect = 4e-04
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 17/76 (22%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVIITTH 63
           GQ++ +  A AL+   ++L+LDE T  VDP    L++++I           + TV+   H
Sbjct: 143 GQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK------DCTVLTIAH 196

Query: 64  YIEEARQAHTVIDNYD 79
            +       T+ID  D
Sbjct: 197 RL------DTIID-SD 205

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG  +RV  A+AL+ +P  LI DEPT  +D + +  +   L ++ +     +++ TH
Sbjct: 128 GGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH 184

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 36.3 bits (85), Expect = 4e-04
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 7   GGQQRRVSFAVALM------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
           GG+Q+RV  A  L         P  L+LDEPT  +D   +  +     Q+  +    VI+
Sbjct: 137 GGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIV 196

Query: 61  TTH 63
             H
Sbjct: 197 VLH 199

Length = 258

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 36.2 bits (84), Expect = 5e-04
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI 43
           GG+Q+RV+ A   + D  +L+LDEPT  +D   R  +
Sbjct: 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191

Length = 235

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 36.0 bits (83), Expect = 5e-04
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           I   GG+ +RV+ A AL+ +    + DEP+  +D   R +    + +++++G KT ++  
Sbjct: 70  IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129

Query: 63  H 63
           H
Sbjct: 130 H 130

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 36.4 bits (84), Expect = 5e-04
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++R++ A A++ +  +L+LDE T  +D      + N +  + K  N+T  I  H + 
Sbjct: 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRK--NRTTFIIAHRLS 531

Query: 67  EARQAHTVI 75
             R A  V+
Sbjct: 532 TVRNADLVL 540

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 35.8 bits (83), Expect = 6e-04
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 7   GGQQRRVSFAVALMH------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
           GG+Q+RV  A  L            L LDEPT  +D   +        Q+ ++G   + +
Sbjct: 138 GGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAV 197

Length = 259

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 7   GGQQRRVSFAVALMHDPE--LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64
           GG+ +RV  A  L  +P   L ILDEP+ G+       +   +  +   GN TVI+  H 
Sbjct: 90  GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGN-TVILIEHN 148

Query: 65  IEEARQAHTVID 76
           ++    A  +ID
Sbjct: 149 LDVLSSADWIID 160

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 35.9 bits (83), Expect = 7e-04
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
           GG+++RV  A AL  +P+LL+LDEPT  +D
Sbjct: 140 GGERQRVHVARALAQEPKLLLLDEPTNHLD 169

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+    L+ +P + +LDEP   +D  LR  +   + ++ K   +T+I  TH   
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195

Query: 67  EA 68
           EA
Sbjct: 196 EA 197

Length = 369

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 11/70 (15%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVD---PLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++R++ A AL+ D  +LILDE T  +D     L Q+    L+Q      +T ++  H
Sbjct: 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-----GRTTLVIAH 526

Query: 64  ---YIEEARQ 70
               IE+A +
Sbjct: 527 RLSTIEKADR 536

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%)

Query: 12  RVSFAVALMHDPELLILDEPTVGVDPLLRQSI-WNHLVQITKDGNKTVIITTH 63
           RV  A AL  +P++L+LDEPT  +D     +I W  L  +  + N T+II +H
Sbjct: 163 RVLLAQALFSNPDILLLDEPTNNLDI---NTIRW--LEDVLNERNSTMIIISH 210

Length = 530

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 35.6 bits (83), Expect = 9e-04
 Identities = 19/65 (29%), Positives = 40/65 (61%)

Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
            S  GG+++RV+   AL+  PELL++DEP   +D   ++ +  +L ++ ++ N  ++  +
Sbjct: 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVS 186

Query: 63  HYIEE 67
           H ++E
Sbjct: 187 HSLDE 191

Length = 352

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 15/30 (50%), Positives = 23/30 (76%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
           GG+++R++ A AL+ DP +LILDE T  +D
Sbjct: 474 GGERQRLAIARALLKDPPILILDEATSALD 503

Length = 588

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 21/63 (33%), Positives = 36/63 (57%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG Q+R+  A  L+  P L+ +DEPT G+D  ++  + + L  + ++    V+I TH + 
Sbjct: 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA 213

Query: 67  EAR 69
            AR
Sbjct: 214 VAR 216

Length = 258

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI 43
           GGQ +RV  A AL  +P+LLILDE    +D +L+  +
Sbjct: 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGV 190

Length = 268

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH---Y 64
           GQ++R++  +AL  + ++L+LDE     DP  R+  +  L+ + ++  KT+   +H   Y
Sbjct: 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY 512

Query: 65  IEEA 68
              A
Sbjct: 513 FIHA 516

Length = 547

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++RV  A AL     +L+LDEPT  +D +  Q     LV+   D  KT +   H ++
Sbjct: 142 GGERQRVLLARALAQATPVLLLDEPTASLD-INHQVRTLELVRRLVDDGKTAVAAIHDLD 200

Query: 67  EA 68
            A
Sbjct: 201 LA 202

Length = 402

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 19  LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV 74
           LM D  +LILDEPT  + P   + +++ + ++   G   V I +H + E RQ A  +
Sbjct: 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFI-SHKLPEIRQLADRI 210

Length = 510

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ +R+  A AL+ +P+L+I DEP   +D  ++  + N L Q+ ++   ++I   H
Sbjct: 164 GGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAH 220

Length = 331

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY 64
           GG+++R       + +PEL ILDE   G+D +    I    V   +DG ++ II THY
Sbjct: 148 GGEKKRNDILQMAVLEPELCILDESDSGLD-IDALKIVADGVNSLRDGKRSFIIVTHY 204

Length = 248

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 18/57 (31%), Positives = 32/57 (56%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++R+  A AL  +P+++I DE    +D  +R  I N L+ + +D     +  +H
Sbjct: 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISH 522

Length = 623

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 2   EISSRG-----GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNK 56
           EI  RG     GQ++RVS A A+  + ++ I D+P   +D  +   +++  ++    G  
Sbjct: 733 EIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKT 792

Query: 57  TVIIT 61
            V++T
Sbjct: 793 RVLVT 797

Length = 1495

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 12  RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITK----DGNKTVIITTH 63
           R++ A     +  +L LDEPT  +D    ++I   L +I +      N  +I+ TH
Sbjct: 129 RLALAETFGSNCGILALDEPTTNLD---EENIEESLAEIIEERKSQKNFQLIVITH 181

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 8    GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
            G ++ +  A +++   ++L+LDEP+  +DP+  Q I   L Q     N TVI++ H +E
Sbjct: 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVE 1413

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 33.4 bits (77), Expect = 0.004
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
           GG+++RVS A AL+    +L  D  T G+D      I   +  +      T  ++
Sbjct: 121 GGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVS 175

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.97
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.97
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.96
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.95
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.95
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.95
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.95
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.95
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.94
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.94
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.94
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.94
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.94
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.94
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.94
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.94
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.94
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.94
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.94
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.94
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.94
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.94
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.94
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.94
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.94
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.94
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.94
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.94
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.94
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.94
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.94
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.94
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.94
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.94
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.94
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.94
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.94
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.94
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.94
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.94
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.94
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.94
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.94
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.94
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.93
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.93
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.93
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.93
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.93
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.93
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.93
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.93
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.93
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.93
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.93
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.93
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.93
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.93
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.93
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.93
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.93
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.93
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.93
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.93
COG1123	539	ATPase components of various ABC-type transport sy	99.93
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.93
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.93
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.93
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.93
PRK10908	222	cell division protein FtsE; Provisional	99.93
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.93
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.93
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.93
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.93
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.93
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.93
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.93
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.93
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.93
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.93
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.93
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.93
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.93
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.93
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.93
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.93
cd03246	173	ABCC_Protease_Secretion This family represents the	99.93
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.93
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.93
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.93
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.93
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.93
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.93
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.93
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.93
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.93
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.93
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.93
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.93
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.93
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.93
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.93
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.93
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.93
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.93
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.93
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.93
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.93
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.93
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.93
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.93
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.93
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.93
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.93
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.93
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.93
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.92
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.92
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.92
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
COG1123	539	ATPase components of various ABC-type transport sy	99.92
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.92
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.92
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.92
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.92
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.92
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.92
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.92
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.92
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.92
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.92
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.92
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.92
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.92
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.92
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.92
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.92
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.92
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.92
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.92
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.92
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.92
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.92
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.92
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.92
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.92
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.92
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.92
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK10938	490	putative molybdenum transport ATP-binding protein	99.92
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.92
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.92
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.92
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.92
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.92
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.92
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.92
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.92
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.92
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.92
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.92
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.92
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.92
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.92
COG4181	228	Predicted ABC-type transport system involved in ly	99.92
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.92
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.92
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.92
PRK13409	590	putative ATPase RIL; Provisional	99.92
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.92
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.92
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.92
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.92
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.92
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.92
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.92
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.92
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.92
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.92
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.92
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.92
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.92
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.92
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.92
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.92
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.92
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.92
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.92
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.92
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.92
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.92
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.92
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.92
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.92
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.92
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.92
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.91
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.91
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.91
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.91
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.91
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.91
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.91
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.91
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.91
PRK10938	490	putative molybdenum transport ATP-binding protein	99.91
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.91
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.91
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.91
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.91
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.91
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.91
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.91
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.91
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.9
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.9
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.9
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.9
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.9
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.9
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.9
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.9
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.9
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.9
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.9
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.9
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.9
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.9
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.9
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.9
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.9
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.9
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.9
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.9
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.9
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.9
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.9
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.9
COG4988	559	CydD ABC-type transport system involved in cytochr	99.9
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.89
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.89
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.89
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.89
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.89
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.89
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.89
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.89
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.89
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.89
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.89
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.89
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.89
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.89
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.89
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.89
PRK13409	590	putative ATPase RIL; Provisional	99.89
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.89
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.89
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.89
COG4172	534	ABC-type uncharacterized transport system, duplica	99.89
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.89
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.89
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.88
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.88
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.88
KOG0055|consensus	1228		99.88
COG4172	534	ABC-type uncharacterized transport system, duplica	99.88
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.88
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.88
PRK11147	635	ABC transporter ATPase component; Reviewed	99.88
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.88
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.88
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.88
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.88
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.88
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.88
COG4987	573	CydC ABC-type transport system involved in cytochr	99.88
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.87
PRK11147	635	ABC transporter ATPase component; Reviewed	99.87
PLN03211	659	ABC transporter G-25; Provisional	99.87
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.87
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.87
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.87
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.87
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.87
PLN03073	718	ABC transporter F family; Provisional	99.87
KOG0058|consensus	716		99.86
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.86
PLN03073	718	ABC transporter F family; Provisional	99.86
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.86
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.86
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.86
PLN03232	1495	ABC transporter C family member; Provisional	99.86
KOG0055|consensus	1228		99.85
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.85
PLN03130	1622	ABC transporter C family member; Provisional	99.85
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.85
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.85
KOG0057|consensus	591		99.85
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.85
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.85
PLN03232	1495	ABC transporter C family member; Provisional	99.84
COG0488	530	Uup ATPase components of ABC transporters with dup	99.84
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.84
PLN03140	1470	ABC transporter G family member; Provisional	99.84
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.84
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.84
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.84
PTZ00243	1560	ABC transporter; Provisional	99.84
PLN03130	1622	ABC transporter C family member; Provisional	99.83
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.83
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.83
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.83
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.83
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.83
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.83
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.83
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.83
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.83
PTZ00243	1560	ABC transporter; Provisional	99.83
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.82
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.82
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.82
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.81
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.81
PLN03140	1470	ABC transporter G family member; Provisional	99.8
COG0488	530	Uup ATPase components of ABC transporters with dup	99.8
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.8
KOG0059|consensus	885		99.79
COG4559	259	ABC-type hemin transport system, ATPase component	99.79
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.78
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.78
KOG0062|consensus	582		99.78
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.77
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.77
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.76
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.76
PHA02562	562	46 endonuclease subunit; Provisional	99.75
KOG0061|consensus	613		99.75
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.75
PRK10869	553	recombination and repair protein; Provisional	99.73
PRK03918	880	chromosome segregation protein; Provisional	99.73
KOG0054|consensus	1381		99.73
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.72
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.72
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.72
PRK01156	895	chromosome segregation protein; Provisional	99.71
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.71
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.71
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.7
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.7
KOG0927|consensus	614		99.69
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.69
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.69
KOG0056|consensus	790		99.68
KOG0062|consensus	582		99.67
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.66
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.66
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.65
KOG0927|consensus	614		99.65
KOG0054|consensus	1381		99.64
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.64
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.63
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.63
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.62
COG4178	604	ABC-type uncharacterized transport system, permeas	99.61
PRK02224	880	chromosome segregation protein; Provisional	99.6
KOG0066|consensus	807		99.53
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.52
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.52
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.51
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.51
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.51
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.5
KOG0065|consensus	1391		99.48
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.48
TIGR00611	365	recf recF protein. All proteins in this family for	99.44
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	99.43
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.43
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.43
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.4
KOG0066|consensus	807		99.39
PRK00064	361	recF recombination protein F; Reviewed	99.39
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.36
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	99.35
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.34
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.34
KOG2355|consensus	291		99.29
KOG0060|consensus	659		99.28
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.28
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.24
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.21
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.18
KOG0063|consensus	592		99.14
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.09
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.03
PRK14079	349	recF recombination protein F; Provisional	99.03
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	99.03
KOG0064|consensus	728		99.02
KOG0063|consensus	592		99.0
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.96
KOG0065|consensus	1391		98.94
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.87
PF13175	415	AAA_15: AAA ATPase domain	98.79
PRK13695	174	putative NTPase; Provisional	98.76
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.72
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.71
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	98.54
KOG0964|consensus	1200		98.53
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.47
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.46
PF13166	712	AAA_13: AAA domain	98.41
COG4637	373	Predicted ATPase [General function prediction only	98.37
COG3910	233	Predicted ATPase [General function prediction only	98.34
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.28
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.27
cd01128	249	rho_factor Transcription termination factor rho is	98.24
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	98.24
PRK06067	234	flagellar accessory protein FlaH; Validated	98.15
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.12
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.1
KOG0962|consensus	1294		98.06
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.06
KOG0933|consensus	1174		98.06
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	98.02
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	97.85
KOG0996|consensus	1293		97.83
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	97.71
PRK08699	325	DNA polymerase III subunit delta'; Validated	97.5
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.48
KOG0018|consensus	1141		97.32
PF13514	1111	AAA_27: AAA domain	97.18
COG4694	758	Uncharacterized protein conserved in bacteria [Fun	97.18
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	97.15
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	97.13
smart00382	148	AAA ATPases associated with a variety of cellular	96.96
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.93
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.77
COG1195	363	RecF Recombinational DNA repair ATPase (RecF pathw	96.64
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.62
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	96.57
PRK04863	1486	mukB cell division protein MukB; Provisional	96.32
PRK14088	440	dnaA chromosomal replication initiation protein; P	96.26
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	96.25
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	96.03
COG3593	581	Predicted ATP-dependent endonuclease of the OLD fa	95.64
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	95.61
PRK06893	229	DNA replication initiation factor; Validated	95.57
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	95.49
COG1106	371	Predicted ATPases [General function prediction onl	95.35
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	95.29
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	95.28
KOG0250|consensus	1074		95.27
COG4938	374	Uncharacterized conserved protein [Function unknow	95.14
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	95.04
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	94.68
TIGR00929	785	VirB4_CagE type IV secretion/conjugal transfer ATP	94.09
PRK04296	190	thymidine kinase; Provisional	93.72
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	93.62

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=4.7e-31  Score=176.31  Aligned_cols=75  Identities=37%  Similarity=0.559  Sum_probs=70.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +|.+|||||||||+|||||+.+|+++|+|||||+|||....++.+.+++++++ |.|.++|||++.+++. +||++.
T Consensus       133 yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviF  208 (240)
T COG1126         133 YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIF  208 (240)
T ss_pred             CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEE
Confidence            47899999999999999999999999999999999999999999999999765 8999999999999987 898864

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.97  E-value=2.1e-30  Score=173.90  Aligned_cols=77  Identities=35%  Similarity=0.517  Sum_probs=73.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceecC
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDN   77 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~~   77 (79)
                      +|.+|||||||||+|||||+.+|++++.||||++||..+.+++++++.+++++.|.|+|+||||...+..+|+++.-
T Consensus       139 ~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l  215 (226)
T COG1136         139 KPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIEL  215 (226)
T ss_pred             CchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEE
Confidence            37899999999999999999999999999999999999999999999999888899999999999999999998764

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.1e-29  Score=169.68  Aligned_cols=76  Identities=36%  Similarity=0.543  Sum_probs=71.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      .|.+|||||||||+|||||+.+|++++|||||++||..++..+.+.+.+++++.+.||++||||.+++-. +|+|+.
T Consensus       127 ~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivv  203 (248)
T COG1116         127 YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVV  203 (248)
T ss_pred             CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEE
Confidence            4789999999999999999999999999999999999999999999999999889999999999999976 888764

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.8e-28  Score=166.73  Aligned_cols=73  Identities=37%  Similarity=0.543  Sum_probs=68.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      .++|||||+|||.|||||+++|++++|||||+|+|+.++..+.++|.++.++ |+||++||||+..+.. +|+++
T Consensus       137 i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi  210 (254)
T COG1121         137 IGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVI  210 (254)
T ss_pred             ccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEE
Confidence            5789999999999999999999999999999999999999999999999776 9999999999999876 88865

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.1e-28  Score=171.39  Aligned_cols=75  Identities=33%  Similarity=0.512  Sum_probs=71.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +|.+|||||||||+|||||+.+|+++|+|||||+|||.+.+.+++.|++++++.|.||+++||.|+.++. ||++.
T Consensus       138 yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVa  213 (339)
T COG1135         138 YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVA  213 (339)
T ss_pred             CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhhe
Confidence            4789999999999999999999999999999999999999999999999999999999999999999987 88864

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.95  E-value=2.1e-28  Score=165.51  Aligned_cols=77  Identities=35%  Similarity=0.471  Sum_probs=72.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecC
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDN   77 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~   77 (79)
                      +|++|||||+||++||||++.+|+++++||||+||||.+...+-++++++.+..|.|+++||||++.+.. +|+++.-
T Consensus       142 ~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L  219 (263)
T COG1127         142 YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVL  219 (263)
T ss_pred             CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEE
Confidence            5889999999999999999999999999999999999999999999999988889999999999999876 7987653

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.95  E-value=7.9e-28  Score=162.55  Aligned_cols=76  Identities=30%  Similarity=0.491  Sum_probs=71.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +|.+|||||+||+||||||+.+|++||+||||++||...+.+++++|.++.++.+.|+|++|||+..+.. |||++.
T Consensus       138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~V  214 (252)
T COG1124         138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAV  214 (252)
T ss_pred             CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheee
Confidence            4778999999999999999999999999999999999999999999999998889999999999999987 898653

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=4.9e-28  Score=163.23  Aligned_cols=76  Identities=39%  Similarity=0.621  Sum_probs=71.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      .+.+|||||||||+||.+|+.+|+++||||||+|||+..++.+++.+.++..+.|.|+|++|||++++.. +|+++.
T Consensus       135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~v  211 (235)
T COG1122         135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVV  211 (235)
T ss_pred             CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999987778999999999999987 888764

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.94  E-value=4.3e-27  Score=154.40  Aligned_cols=75  Identities=37%  Similarity=0.513  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       128 ~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~  203 (213)
T cd03259         128 PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAV  203 (213)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEE
Confidence            568999999999999999999999999999999999999999999999866558999999999998765 787653

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.94  E-value=4.2e-27  Score=154.71  Aligned_cols=75  Identities=33%  Similarity=0.521  Sum_probs=69.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++..+|+++.
T Consensus       138 ~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~  212 (218)
T cd03255         138 PSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIE  212 (218)
T ss_pred             hhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEE
Confidence            568999999999999999999999999999999999999999999999866458999999999998877888754

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.94  E-value=6e-27  Score=153.96  Aligned_cols=74  Identities=34%  Similarity=0.579  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+++++.. +|+++.
T Consensus       136 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~  210 (216)
T TIGR00960       136 PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLT  210 (216)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            5689999999999999999999999999999999999999999999988654 8999999999999875 788754

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.94  E-value=6e-27  Score=154.25  Aligned_cols=75  Identities=28%  Similarity=0.522  Sum_probs=69.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.+.++.++.|.|+|++||+++++..+|+++.
T Consensus       139 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~  213 (221)
T TIGR02211       139 PSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLE  213 (221)
T ss_pred             hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEE
Confidence            568999999999999999999999999999999999999999999999876558999999999999877887653

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.94  E-value=7.1e-27  Score=153.00  Aligned_cols=74  Identities=39%  Similarity=0.630  Sum_probs=68.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+++++.. +|+++.
T Consensus       132 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~  206 (211)
T cd03225         132 PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIV  206 (211)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999998665 8999999999999987 888764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.94  E-value=2.9e-27  Score=161.64  Aligned_cols=76  Identities=36%  Similarity=0.560  Sum_probs=71.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      .|.+|||||+|||.+||||+.+|+++|+||||++|||.++.++.+.+.++.++.|+|||+||||++++-. +|++..
T Consensus       132 yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~v  208 (309)
T COG1125         132 YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAV  208 (309)
T ss_pred             CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEE
Confidence            3789999999999999999999999999999999999999999999999998889999999999999976 888753

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.94  E-value=3.5e-27  Score=164.08  Aligned_cols=79  Identities=30%  Similarity=0.471  Sum_probs=73.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecCCC
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDNYD   79 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~~~   79 (79)
                      .|.+|||||+|||.||.||+.+|+++|.||||++||...+.+++++|+++.++.|.++|++|||+..+.. +|++..-|+
T Consensus       150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYa  229 (316)
T COG0444         150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYA  229 (316)
T ss_pred             CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEEC
Confidence            3789999999999999999999999999999999999999999999999988889999999999999876 899876653

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.94  E-value=5.7e-27  Score=155.86  Aligned_cols=75  Identities=36%  Similarity=0.519  Sum_probs=68.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       134 ~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~  209 (235)
T cd03261         134 PAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAV  209 (235)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEE
Confidence            568999999999999999999999999999999999999999999999865458999999999998875 888753

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.94  E-value=4.8e-27  Score=162.11  Aligned_cols=75  Identities=48%  Similarity=0.824  Sum_probs=70.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +++||+|||||++||+||+.+|+++||||||+||||.++..++++|+++++++|.||+++||.++++.. ||+++.
T Consensus       134 ~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~i  209 (293)
T COG1131         134 VRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVII  209 (293)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999987756899999999999987 887653

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.94  E-value=9.5e-27  Score=153.54  Aligned_cols=75  Identities=39%  Similarity=0.581  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       129 ~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~  204 (220)
T cd03293         129 PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVV  204 (220)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999866558999999999998765 787653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.94  E-value=1.2e-26  Score=152.34  Aligned_cols=74  Identities=36%  Similarity=0.564  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++++ .|.|+|++||+++++.. +|+++.
T Consensus       130 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~  204 (213)
T cd03235         130 IGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLL  204 (213)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEE
Confidence            578999999999999999999999999999999999999999999999865 58999999999999876 788753

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.94  E-value=7.2e-27  Score=164.31  Aligned_cols=76  Identities=32%  Similarity=0.472  Sum_probs=70.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      .+.+|||||||||+|||||+.+|+++|+||||++||+.++..+++.|++++++.|.|||++||+++.+.. ||+++.
T Consensus       137 ~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~v  213 (343)
T TIGR02314       137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAV  213 (343)
T ss_pred             ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999977668999999999999976 888753

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.94  E-value=1.1e-26  Score=154.40  Aligned_cols=75  Identities=35%  Similarity=0.602  Sum_probs=68.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++.|.|||++||+++++.. +|+++.
T Consensus       142 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~  217 (241)
T cd03256         142 ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVG  217 (241)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876558999999999999884 788653

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.94  E-value=1.6e-26  Score=152.53  Aligned_cols=75  Identities=32%  Similarity=0.440  Sum_probs=68.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       143 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~  218 (228)
T cd03257         143 PHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAV  218 (228)
T ss_pred             chhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEE
Confidence            578999999999999999999999999999999999999999999999876557899999999999875 888754

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.2e-26  Score=161.85  Aligned_cols=76  Identities=30%  Similarity=0.484  Sum_probs=70.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecC
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDN   77 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~   77 (79)
                      +.+|||||+||++|||||+.+|+++|+||||+|||+..+.++++.|.++.++.|.|+|++|||++.+.. +|+++.-
T Consensus       151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm  227 (326)
T PRK11022        151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVM  227 (326)
T ss_pred             chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            678999999999999999999999999999999999999999999999976668999999999999865 8987654

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.94  E-value=1.5e-26  Score=154.02  Aligned_cols=75  Identities=35%  Similarity=0.484  Sum_probs=68.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.+++++.|.|||++||+++++.. +|+++.
T Consensus       112 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~  187 (230)
T TIGR01184       112 PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVM  187 (230)
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence            568999999999999999999999999999999999999999999999876558999999999998875 787653

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.94  E-value=1.8e-26  Score=150.84  Aligned_cols=74  Identities=32%  Similarity=0.476  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +|+++.
T Consensus       124 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~  198 (205)
T cd03226         124 PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLL  198 (205)
T ss_pred             chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            5689999999999999999999999999999999999999999999998654 8999999999999875 888753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.94  E-value=1.8e-26  Score=151.35  Aligned_cols=74  Identities=39%  Similarity=0.570  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus       135 ~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~  209 (214)
T TIGR02673       135 PEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVII  209 (214)
T ss_pred             hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEE
Confidence            568999999999999999999999999999999999999999999999865 48899999999999886 788753

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.94  E-value=1.9e-26  Score=151.16  Aligned_cols=74  Identities=28%  Similarity=0.452  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +|+++
T Consensus       128 ~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~  202 (213)
T cd03301         128 PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIA  202 (213)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE
Confidence            578999999999999999999999999999999999999999999999876558999999999998876 78764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.9e-26  Score=153.35  Aligned_cols=74  Identities=27%  Similarity=0.459  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      +.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++..+|+++
T Consensus       143 ~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~  216 (233)
T PRK11629        143 PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL  216 (233)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEE
Confidence            56899999999999999999999999999999999999999999999986555899999999999988777654

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.94  E-value=1.5e-26  Score=157.70  Aligned_cols=74  Identities=28%  Similarity=0.420  Sum_probs=69.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      ..+||||||||+.|||||+++|++++|||||+.||...+-++++.+++++++.|.|+|++.||++.+.+ ||+++
T Consensus       136 ~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i  210 (258)
T COG1120         136 VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLI  210 (258)
T ss_pred             ccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence            468999999999999999999999999999999999999999999999988889999999999999876 78765

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.8e-26  Score=161.09  Aligned_cols=75  Identities=28%  Similarity=0.493  Sum_probs=69.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++|+||||+|||+..+.++.+.|.++.++.|.|+|+||||+.++.. +|+++.
T Consensus       156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~v  231 (330)
T PRK15093        156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINV  231 (330)
T ss_pred             chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999876568999999999999976 888754

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.94  E-value=2.5e-26  Score=152.09  Aligned_cols=75  Identities=28%  Similarity=0.435  Sum_probs=69.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.+++++.|.|||++||+++++..+|+++.
T Consensus       144 ~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~  218 (228)
T PRK10584        144 PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLR  218 (228)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999866558899999999998877888653

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.94  E-value=2.4e-26  Score=153.17  Aligned_cols=75  Identities=35%  Similarity=0.578  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus       143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~  218 (243)
T TIGR02315       143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVG  218 (243)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEE
Confidence            578999999999999999999999999999999999999999999999866558999999999999865 787653

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.94  E-value=2.8e-26  Score=150.37  Aligned_cols=75  Identities=32%  Similarity=0.553  Sum_probs=69.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++.. +|+++.
T Consensus       126 ~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~  201 (211)
T cd03298         126 PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVF  201 (211)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEE
Confidence            568999999999999999999999999999999999999999999999876558999999999999876 888653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.94  E-value=2.7e-26  Score=150.83  Aligned_cols=75  Identities=40%  Similarity=0.552  Sum_probs=68.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.+++++.|.|+|++||+++++.. +|+++.
T Consensus       129 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~  204 (214)
T cd03297         129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVV  204 (214)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEE
Confidence            578999999999999999999999999999999999999999999999876558899999999999865 787653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.94  E-value=2.2e-26  Score=161.03  Aligned_cols=77  Identities=26%  Similarity=0.427  Sum_probs=70.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecC
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDN   77 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~   77 (79)
                      .+.+|||||+||++|||||+.+|+++|+||||+|||+.++.++++.|.++.++.|.|+|++|||++++.. +|+++.-
T Consensus       158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl  235 (331)
T PRK15079        158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM  235 (331)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            3678999999999999999999999999999999999999999999999876668999999999999976 8887653

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.94  E-value=2.5e-26  Score=153.26  Aligned_cols=75  Identities=33%  Similarity=0.487  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.+.+++++.|.|||++||+++++.. +|+++.
T Consensus       134 ~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~  209 (239)
T cd03296         134 PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVV  209 (239)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999876558999999999998765 788653

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.94  E-value=2.3e-26  Score=158.54  Aligned_cols=74  Identities=38%  Similarity=0.753  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||+||+.+|+++||||||+|||+.+++.+++.+.++.++ |.|||++||+++++.. ||+++.
T Consensus       122 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~  196 (302)
T TIGR01188       122 VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAI  196 (302)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999998654 8999999999999876 888653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=2.7e-26  Score=160.28  Aligned_cols=77  Identities=23%  Similarity=0.425  Sum_probs=71.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecC
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDN   77 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~   77 (79)
                      .+.+|||||+||++|||||+.+|++||+||||++||+..+.++++.|.++.++.|.|+|++|||+..+.. +|+++.-
T Consensus       151 ~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm  228 (327)
T PRK11308        151 YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVM  228 (327)
T ss_pred             CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            3679999999999999999999999999999999999999999999999877668999999999999976 8887653

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=3.4e-26  Score=156.88  Aligned_cols=75  Identities=39%  Similarity=0.651  Sum_probs=69.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.+++++.|.|||++||+++++.. +|+++.
T Consensus       142 ~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~  217 (287)
T PRK13637        142 PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIV  217 (287)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876568999999999999865 888754

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.94  E-value=3.2e-26  Score=151.05  Aligned_cols=75  Identities=40%  Similarity=0.727  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       129 ~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~  204 (220)
T cd03265         129 VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAI  204 (220)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999876557899999999999876 787653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.94  E-value=2.6e-26  Score=158.93  Aligned_cols=73  Identities=40%  Similarity=0.750  Sum_probs=67.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +++||+|||||++||+||+++|++++|||||+|||+.++..+++++.++.+ .|.|||++||+++++.. ||+++
T Consensus       136 ~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~e~~~~~d~i~  209 (306)
T PRK13537        136 VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLC  209 (306)
T ss_pred             hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEE
Confidence            568999999999999999999999999999999999999999999999854 48999999999999976 88865

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.8e-26  Score=154.50  Aligned_cols=71  Identities=34%  Similarity=0.580  Sum_probs=65.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i   74 (79)
                      ...||||||||+||||||+.+|++||||||||+|||.+..++-+++.++.+  ..|||+|||+|+-+.+ +|+.
T Consensus       147 a~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~t  218 (253)
T COG1117         147 ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQAARVSDYT  218 (253)
T ss_pred             ccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhh
Confidence            457999999999999999999999999999999999999999999999853  6899999999998876 5654

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.94  E-value=3.4e-26  Score=152.37  Aligned_cols=75  Identities=39%  Similarity=0.649  Sum_probs=68.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++..+|+++.
T Consensus       130 ~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~  204 (236)
T TIGR03864       130 VRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVV  204 (236)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEE
Confidence            568999999999999999999999999999999999999999999999865458999999999999877888654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.94  E-value=3.6e-26  Score=159.78  Aligned_cols=76  Identities=30%  Similarity=0.450  Sum_probs=70.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecC
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDN   77 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~   77 (79)
                      +.+|||||+||++|||||+.+|+++|+||||+|||+.++..+++.|.++.++.|.|+|++|||+..+.. +|+++.-
T Consensus       159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm  235 (330)
T PRK09473        159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVM  235 (330)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE
Confidence            678999999999999999999999999999999999999999999999977668999999999999875 8887653

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=3.4e-26  Score=161.35  Aligned_cols=75  Identities=27%  Similarity=0.419  Sum_probs=69.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.++++.++.|.|+|++||+.+++.. +|+++.
T Consensus       132 ~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~v  207 (356)
T PRK11650        132 PRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVV  207 (356)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            678999999999999999999999999999999999999999999999877668999999999999876 888653

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=4.7e-26  Score=156.36  Aligned_cols=76  Identities=36%  Similarity=0.598  Sum_probs=69.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       142 ~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~  218 (290)
T PRK13634        142 SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVV  218 (290)
T ss_pred             CcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999876668999999999999865 888753

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.6e-26  Score=156.05  Aligned_cols=74  Identities=32%  Similarity=0.582  Sum_probs=70.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      ..+|||||+|||+|||||+++|+++|.|||+++|||.+.+.+++.|++++++.|.|+|+..|+.+.+.. |+|++
T Consensus       145 a~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Rii  219 (258)
T COG3638         145 ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRII  219 (258)
T ss_pred             hccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhhe
Confidence            468999999999999999999999999999999999999999999999999999999999999999976 88875

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=4.5e-26  Score=153.99  Aligned_cols=75  Identities=36%  Similarity=0.517  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+++++.|.|||++||+++++.. +|+++.
T Consensus       126 ~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~  201 (255)
T PRK11248        126 IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVL  201 (255)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999865558999999999999876 787653

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=4.2e-26  Score=159.96  Aligned_cols=75  Identities=31%  Similarity=0.487  Sum_probs=69.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus       138 ~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~  213 (343)
T PRK11153        138 PAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAV  213 (343)
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876668999999999999876 888653

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.93  E-value=5.5e-26  Score=154.43  Aligned_cols=75  Identities=32%  Similarity=0.553  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++.. +|+++.
T Consensus       158 ~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~  233 (269)
T cd03294         158 PDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAI  233 (269)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence            578999999999999999999999999999999999999999999999866558999999999998865 787653

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.93  E-value=4.8e-26  Score=151.17  Aligned_cols=74  Identities=31%  Similarity=0.450  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus       141 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~  215 (236)
T cd03219         141 AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTV  215 (236)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999865 58999999999999876 787653

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.93  E-value=5.8e-26  Score=148.79  Aligned_cols=74  Identities=39%  Similarity=0.541  Sum_probs=67.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +|+++.
T Consensus       134 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH~~~~~~~~~d~i~~  208 (214)
T cd03292         134 PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIA  208 (214)
T ss_pred             hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            5689999999999999999999999999999999999999999999998554 8899999999999876 788653

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.93  E-value=4.7e-26  Score=161.26  Aligned_cols=76  Identities=32%  Similarity=0.537  Sum_probs=69.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      .+.+|||||||||+|||||+.+|+++||||||++||+..++.+.+.+.++.++.|+|||++||+++++.. +|+++.
T Consensus       126 ~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~v  202 (363)
T TIGR01186       126 YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVI  202 (363)
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999876668999999999999865 888753

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=6.3e-26  Score=154.91  Aligned_cols=75  Identities=33%  Similarity=0.429  Sum_probs=69.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.+++++.|.|||++||+++++..+|+++.
T Consensus       138 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~  212 (279)
T PRK13650        138 PARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLV  212 (279)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876558999999999999877888653

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.93  E-value=8e-26  Score=145.75  Aligned_cols=75  Identities=32%  Similarity=0.463  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++.. +|+++.
T Consensus        95 ~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~  170 (180)
T cd03214          95 FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVIL  170 (180)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999998865447899999999999865 787653

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.93  E-value=6.5e-26  Score=153.01  Aligned_cols=75  Identities=25%  Similarity=0.338  Sum_probs=69.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||++||+.++..+.+.|.+++++.|.|||++||+++++.. +|+++.
T Consensus       113 ~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~  188 (246)
T cd03237         113 VPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV  188 (246)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999876668999999999999886 888653

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.93  E-value=5.4e-26  Score=160.77  Aligned_cols=76  Identities=25%  Similarity=0.427  Sum_probs=69.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG-NKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~-g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|.++.++. |.|+|++|||++++.. +|+++.
T Consensus       134 ~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~v  211 (362)
T TIGR03258       134 LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGI  211 (362)
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            367899999999999999999999999999999999999999999999987664 7999999999999876 888754

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.93  E-value=6.8e-26  Score=153.85  Aligned_cols=75  Identities=25%  Similarity=0.426  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       141 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~  216 (269)
T PRK11831        141 PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYI  216 (269)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEE
Confidence            568999999999999999999999999999999999999999999999866558999999999998876 787653

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.93  E-value=3.2e-26  Score=152.38  Aligned_cols=75  Identities=32%  Similarity=0.536  Sum_probs=69.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++..||.||||||+|||||+++|++++|||||+|||..++..+.+.+.+.. +.|++||++||.+++++. ||+++.
T Consensus       130 Rv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k-~egr~viFSSH~m~EvealCDrviv  205 (245)
T COG4555         130 RVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGRAVIFSSHIMQEVEALCDRVIV  205 (245)
T ss_pred             HHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh-cCCcEEEEecccHHHHHHhhheEEE
Confidence            357899999999999999999999999999999999999999999999874 569999999999999985 998753

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.93  E-value=6.8e-26  Score=150.59  Aligned_cols=75  Identities=27%  Similarity=0.392  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       123 ~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~  198 (230)
T TIGR02770       123 PFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAV  198 (230)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999866558899999999999865 787653

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.93  E-value=7.2e-26  Score=150.25  Aligned_cols=75  Identities=33%  Similarity=0.486  Sum_probs=68.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       138 ~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~  213 (233)
T cd03258         138 PAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAV  213 (233)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999866558999999999999875 788653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.93  E-value=7.2e-26  Score=153.59  Aligned_cols=75  Identities=36%  Similarity=0.517  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|.++.++.|.|||++||+++++.. +|+++.
T Consensus       131 ~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~  206 (257)
T PRK11247        131 PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLL  206 (257)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999866568999999999998865 787653

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.93  E-value=6.3e-26  Score=159.87  Aligned_cols=76  Identities=34%  Similarity=0.486  Sum_probs=70.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|.++.++.|.|+|++|||++++.. +|+++.
T Consensus       133 ~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~v  209 (353)
T PRK10851        133 YPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVV  209 (353)
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999877668999999999999876 888753

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.93  E-value=5.7e-26  Score=156.61  Aligned_cols=74  Identities=43%  Similarity=0.752  Sum_probs=68.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.+ .|.|||++||+++++.. +|+++.
T Consensus       133 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~~~~~~~d~i~~  207 (303)
T TIGR01288       133 VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCV  207 (303)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999865 48999999999999875 888653

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=7.9e-26  Score=154.89  Aligned_cols=75  Identities=33%  Similarity=0.628  Sum_probs=69.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       143 ~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~  218 (286)
T PRK13646        143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIV  218 (286)
T ss_pred             cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence            678999999999999999999999999999999999999999999999866568999999999998864 788754

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.93  E-value=5.7e-26  Score=148.62  Aligned_cols=74  Identities=31%  Similarity=0.483  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus       124 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~  198 (208)
T cd03268         124 VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGI  198 (208)
T ss_pred             HhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEE
Confidence            468999999999999999999999999999999999999999999998865 58999999999999875 787653

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.93  E-value=9.7e-26  Score=147.64  Aligned_cols=74  Identities=34%  Similarity=0.533  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus       133 ~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~~  207 (213)
T cd03262         133 PAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRVIF  207 (213)
T ss_pred             ccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999865 48899999999999875 888653

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=6e-26  Score=159.93  Aligned_cols=76  Identities=36%  Similarity=0.468  Sum_probs=70.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|+++||||||++||+..+.++.+.|+++.++.|.|+|++|||.+++.. +|+++.
T Consensus       133 ~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~v  209 (351)
T PRK11432        133 YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIV  209 (351)
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999877668999999999999866 788753

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.93  E-value=4.3e-26  Score=167.32  Aligned_cols=78  Identities=31%  Similarity=0.445  Sum_probs=73.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecCC
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDNY   78 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~~   78 (79)
                      .|.+||||||||+.||+||+++|++||+||||++||+..+.++++.|+++.++.|.++|++|||+..+.+ +|+++.-|
T Consensus       151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~  229 (539)
T COG1123         151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMY  229 (539)
T ss_pred             CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEE
Confidence            3789999999999999999999999999999999999999999999999998899999999999999987 89987543

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.93  E-value=6e-26  Score=160.58  Aligned_cols=75  Identities=29%  Similarity=0.459  Sum_probs=69.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus       131 ~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~v  206 (369)
T PRK11000        131 PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV  206 (369)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876668999999999998875 788653

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=8.8e-26  Score=151.50  Aligned_cols=75  Identities=25%  Similarity=0.432  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++.|.|||++||+++++.. +|+++.
T Consensus       151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~  226 (255)
T PRK11300        151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYV  226 (255)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999866558999999999999865 787653

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.93  E-value=9.4e-26  Score=149.22  Aligned_cols=73  Identities=36%  Similarity=0.604  Sum_probs=66.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.++  .|||++||+++++.. +|+++.
T Consensus       139 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~  212 (227)
T cd03260         139 ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAF  212 (227)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEE
Confidence            4789999999999999999999999999999999999999999999998653  899999999998875 787653

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.93  E-value=9e-26  Score=149.55  Aligned_cols=75  Identities=31%  Similarity=0.545  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus       129 ~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~  204 (230)
T TIGR03410       129 GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYV  204 (230)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999865557999999999999886 787653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.93  E-value=1.1e-25  Score=148.61  Aligned_cols=74  Identities=30%  Similarity=0.469  Sum_probs=67.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +|+++.
T Consensus       135 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~  209 (222)
T PRK10908        135 PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLT  209 (222)
T ss_pred             chhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999998654 7899999999999876 777653

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.93  E-value=8.4e-26  Score=157.43  Aligned_cols=75  Identities=35%  Similarity=0.459  Sum_probs=69.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.+.++.++.|.|+|++||+++++.. +|+++.
T Consensus        98 ~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~v  173 (325)
T TIGR01187        98 PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAI  173 (325)
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876668999999999999876 788753

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.93  E-value=8.5e-26  Score=148.51  Aligned_cols=74  Identities=30%  Similarity=0.523  Sum_probs=67.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus       134 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~~  208 (218)
T cd03266         134 VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVVV  208 (218)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhcCEEEE
Confidence            568999999999999999999999999999999999999999999999864 48899999999998875 787653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.93  E-value=8.3e-26  Score=158.62  Aligned_cols=74  Identities=43%  Similarity=0.759  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++||+||+++|+++||||||+|||+.++..+++.|.++.+ .|.|||++||+++++.. ||+++.
T Consensus       170 ~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~e~~~~~d~i~i  244 (340)
T PRK13536        170 VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCV  244 (340)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999865 48999999999999976 888753

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.93  E-value=1.1e-25  Score=151.00  Aligned_cols=75  Identities=32%  Similarity=0.468  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++.. +|+++.
T Consensus       146 ~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~  221 (253)
T TIGR02323       146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLV  221 (253)
T ss_pred             chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence            568999999999999999999999999999999999999999999998866558999999999999875 787654

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.1e-25  Score=153.38  Aligned_cols=74  Identities=34%  Similarity=0.503  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.+++++ |.|||++||+++++.. +|+++.
T Consensus       136 ~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~  210 (274)
T PRK13647        136 PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIV  210 (274)
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999998654 8999999999999865 888653

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.93  E-value=1.2e-25  Score=151.43  Aligned_cols=75  Identities=31%  Similarity=0.493  Sum_probs=68.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+.+++.. +|+++.
T Consensus       149 ~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~  224 (258)
T PRK11701        149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLV  224 (258)
T ss_pred             CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence            678999999999999999999999999999999999999999999998866558999999999999975 787653

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.93  E-value=1.1e-25  Score=148.19  Aligned_cols=74  Identities=27%  Similarity=0.455  Sum_probs=67.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus       130 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~  204 (222)
T cd03224         130 AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYV  204 (222)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEE
Confidence            468999999999999999999999999999999999999999999999865 57999999999998865 787653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.93  E-value=7.1e-26  Score=149.11  Aligned_cols=75  Identities=32%  Similarity=0.512  Sum_probs=70.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      |.+|||||||||++||+|+++-++++|||||++|||..+.++..++.+++.+.+.|++||||.++++.. +++++.
T Consensus       127 P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~f  202 (231)
T COG3840         127 PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVF  202 (231)
T ss_pred             ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEE
Confidence            689999999999999999999999999999999999999999999999999999999999999999876 677653

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.3e-25  Score=153.92  Aligned_cols=74  Identities=35%  Similarity=0.577  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+ .|.|||++||+++++.. +|+++.
T Consensus       143 ~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~v~~  217 (287)
T PRK13641        143 PFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVLV  217 (287)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999854 48999999999999875 888653

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.93  E-value=8.4e-26  Score=149.07  Aligned_cols=70  Identities=33%  Similarity=0.503  Sum_probs=65.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhc
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAH   72 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d   72 (79)
                      |.+|||||||||+||||++.+|+++|.||||.+|||....++++++.++++ .|.||+|+|||.+.+.+..
T Consensus       135 P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~lv~~~~  204 (223)
T COG2884         135 PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLELVNRMR  204 (223)
T ss_pred             ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHHHHhcc
Confidence            679999999999999999999999999999999999999999999999965 5999999999999988753

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.2e-25  Score=154.00  Aligned_cols=75  Identities=35%  Similarity=0.527  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~  223 (289)
T PRK13645        148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIV  223 (289)
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999866558999999999998865 787653

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.93  E-value=1.3e-25  Score=148.77  Aligned_cols=74  Identities=35%  Similarity=0.519  Sum_probs=67.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus       131 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~~  205 (232)
T cd03218         131 ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAYI  205 (232)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999998865 48899999999988765 787653

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.93  E-value=1e-25  Score=159.93  Aligned_cols=76  Identities=32%  Similarity=0.442  Sum_probs=70.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|+++.++.|.|+|++|||.+++.. +|+++.
T Consensus       141 ~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~v  217 (375)
T PRK09452        141 KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVV  217 (375)
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999877668999999999999875 888653

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.93  E-value=9.7e-26  Score=158.91  Aligned_cols=75  Identities=36%  Similarity=0.491  Sum_probs=69.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|+++.++.|.|+|++||+++++.. +|+++.
T Consensus       132 ~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~v  207 (353)
T TIGR03265       132 PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVV  207 (353)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999877678999999999999876 888653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.4e-25  Score=153.89  Aligned_cols=74  Identities=36%  Similarity=0.588  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.+.++++ .|.|||++||+++++.. +|+++.
T Consensus       142 ~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~~~~~~~~dri~~  216 (288)
T PRK13643        142 PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMDDVADYADYVYL  216 (288)
T ss_pred             cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999998865 48999999999998865 888754

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.93  E-value=1.6e-25  Score=145.95  Aligned_cols=74  Identities=41%  Similarity=0.647  Sum_probs=67.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.++++.++ |.|+|++||+++....+|+++.
T Consensus       132 ~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~d~i~~  205 (206)
T TIGR03608       132 IYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPEVAKQADRVIE  205 (206)
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHhhcCEEEe
Confidence            4689999999999999999999999999999999999999999999998654 8999999999998777887753

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.93  E-value=1.5e-25  Score=148.70  Aligned_cols=75  Identities=27%  Similarity=0.391  Sum_probs=69.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++..+|+++.
T Consensus       135 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~  209 (225)
T PRK10247        135 IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVIT  209 (225)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876568999999999999877888653

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.7e-25  Score=149.70  Aligned_cols=75  Identities=36%  Similarity=0.505  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|.++.++.|.|||++||+++++.. +|+++.
T Consensus       129 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~  204 (241)
T PRK14250        129 VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAF  204 (241)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999865458999999999999875 788653

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.3e-25  Score=155.52  Aligned_cols=74  Identities=34%  Similarity=0.561  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||+|+.+|+++||||||+|||+..+..+.+.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus       163 ~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~v  237 (305)
T PRK13651        163 PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIF  237 (305)
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999864 48999999999998765 888753

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.93  E-value=1.5e-25  Score=151.84  Aligned_cols=75  Identities=25%  Similarity=0.370  Sum_probs=68.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++.|.|||++||+++.+.. +|+++.
T Consensus       148 ~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~  223 (265)
T TIGR02769       148 PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAV  223 (265)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEE
Confidence            568999999999999999999999999999999999999999999999876558999999999999875 787653

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.93  E-value=1.6e-25  Score=149.91  Aligned_cols=74  Identities=38%  Similarity=0.572  Sum_probs=67.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++ |.|||++||+++++.. +|+++.
T Consensus       142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~  216 (250)
T PRK11264        142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIF  216 (250)
T ss_pred             hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEE
Confidence            5789999999999999999999999999999999999999999999988654 8899999999999875 788653

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.93  E-value=1.8e-25  Score=143.34  Aligned_cols=71  Identities=27%  Similarity=0.427  Sum_probs=65.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      ||+||+||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+ .|.|+|++||+++++..+|+++.
T Consensus        97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~d~v~~  167 (173)
T cd03246          97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPETLASADRILV  167 (173)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhCCEEEE
Confidence            899999999999999999999999999999999999999999998864 48999999999998877888753

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.4e-25  Score=157.80  Aligned_cols=75  Identities=28%  Similarity=0.478  Sum_probs=69.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|+++.++.|.|+|++||+++++.. +|+++.
T Consensus       126 ~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~  201 (352)
T PRK11144        126 PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVV  201 (352)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEE
Confidence            678999999999999999999999999999999999999999999999876668999999999998876 787653

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.9e-25  Score=148.48  Aligned_cols=75  Identities=31%  Similarity=0.531  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++.. +|+++.
T Consensus       127 ~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~  202 (232)
T PRK10771        127 PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLV  202 (232)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999866558899999999999865 787653

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.8e-25  Score=152.85  Aligned_cols=75  Identities=36%  Similarity=0.491  Sum_probs=69.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.++.|.|||++||+++++..+|+++.
T Consensus       138 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~  212 (279)
T PRK13635        138 PHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIV  212 (279)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE
Confidence            578999999999999999999999999999999999999999999999876558999999999999887888653

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.93  E-value=1.4e-25  Score=149.82  Aligned_cols=75  Identities=36%  Similarity=0.551  Sum_probs=68.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+.+++.. +|+++.
T Consensus       133 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~  208 (242)
T cd03295         133 PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAI  208 (242)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999866558999999999998765 787653

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.93  E-value=1.6e-25  Score=148.87  Aligned_cols=73  Identities=33%  Similarity=0.545  Sum_probs=67.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|.++. + |.|||++||+++++..+|+++.
T Consensus       136 ~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~d~v~~  208 (237)
T cd03252         136 GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVKNADRIIV  208 (237)
T ss_pred             CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHHhCCEEEE
Confidence            57899999999999999999999999999999999999999999999885 4 7999999999999877887653

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.9e-25  Score=151.33  Aligned_cols=75  Identities=25%  Similarity=0.365  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++.|.|||++||+++++.. +|+++.
T Consensus       145 ~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~  220 (265)
T PRK10575        145 VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVA  220 (265)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999866558999999999999865 787653

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.93  E-value=1.5e-25  Score=157.58  Aligned_cols=75  Identities=25%  Similarity=0.420  Sum_probs=69.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus       129 ~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~  204 (354)
T TIGR02142       129 PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVV  204 (354)
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876658999999999999875 788653

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.7e-25  Score=160.05  Aligned_cols=75  Identities=28%  Similarity=0.535  Sum_probs=69.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++.|+|||++||+++++.. +|+++.
T Consensus       162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~v  237 (400)
T PRK10070        162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAI  237 (400)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEE
Confidence            678999999999999999999999999999999999999999999999876568999999999999865 788653

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.93  E-value=1.8e-25  Score=150.86  Aligned_cols=75  Identities=29%  Similarity=0.504  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|.+++++.|.|||++||+++++.. +|+++.
T Consensus       150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~  225 (262)
T PRK09984        150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVA  225 (262)
T ss_pred             ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876558999999999998765 787653

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.9e-25  Score=152.56  Aligned_cols=75  Identities=39%  Similarity=0.553  Sum_probs=69.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.+.+++++.|.|||++||+++++..+|+++.
T Consensus       142 ~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~  216 (280)
T PRK13633        142 PHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIV  216 (280)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEE
Confidence            578999999999999999999999999999999999999999999999866558999999999999877888754

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.93  E-value=2.4e-25  Score=146.42  Aligned_cols=75  Identities=32%  Similarity=0.558  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.+.++.++.|.|+|++||+.+++.. +|+++.
T Consensus       126 ~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~  201 (213)
T TIGR01277       126 PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAV  201 (213)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEE
Confidence            578999999999999999999999999999999999999999999999866558999999999998865 788653

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.93  E-value=1.4e-25  Score=163.58  Aligned_cols=75  Identities=33%  Similarity=0.494  Sum_probs=69.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       154 ~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~  229 (529)
T PRK15134        154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAV  229 (529)
T ss_pred             CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEE
Confidence            678999999999999999999999999999999999999999999999876558999999999999875 788754

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.2e-25  Score=151.36  Aligned_cols=74  Identities=32%  Similarity=0.451  Sum_probs=67.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|||++||+++++.. +|+++.
T Consensus       134 ~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~d~i~~  208 (271)
T PRK13638        134 IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYV  208 (271)
T ss_pred             chhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            5689999999999999999999999999999999999999999999998654 8899999999999865 787653

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.93  E-value=2e-25  Score=149.04  Aligned_cols=75  Identities=36%  Similarity=0.628  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++||+||+.+|+++||||||+|||+.+++.+.+.|.++.++.|.|||++||+++++.. +|+++.
T Consensus       151 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~  226 (236)
T cd03267         151 VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLV  226 (236)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEE
Confidence            468999999999999999999999999999999999999999999999876557899999999998865 787653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.2e-25  Score=155.32  Aligned_cols=74  Identities=39%  Similarity=0.591  Sum_probs=67.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus       174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~v  248 (320)
T PRK13631        174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIV  248 (320)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999998865 48999999999998754 888754

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.93  E-value=2.3e-25  Score=147.97  Aligned_cols=73  Identities=23%  Similarity=0.395  Sum_probs=67.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||||||||++|||+++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+.+++.. +|+++
T Consensus       140 ~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~  213 (224)
T cd03220         140 VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRAL  213 (224)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEE
Confidence            5689999999999999999999999999999999999999999999998655 7899999999999875 78764

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.93  E-value=1.9e-25  Score=146.99  Aligned_cols=72  Identities=35%  Similarity=0.469  Sum_probs=65.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      .+||||||||++||||++.+|+++||||||+|||+.++..+.+.+.++.+  +.|||++||++++...+|+++.
T Consensus       139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~d~v~~  210 (220)
T cd03245         139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLDLVDRIIV  210 (220)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHHHhCCEEEE
Confidence            58999999999999999999999999999999999999999999998854  3899999999998766888653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.93  E-value=2e-25  Score=151.44  Aligned_cols=74  Identities=22%  Similarity=0.366  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++.|.|||++||+++++.. +|+++
T Consensus       147 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~  221 (267)
T PRK15112        147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVL  221 (267)
T ss_pred             chhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEE
Confidence            568999999999999999999999999999999999999999999999876558999999999999876 78764

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.93  E-value=2e-25  Score=146.23  Aligned_cols=74  Identities=36%  Similarity=0.593  Sum_probs=67.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||+.+++.. +|+++.
T Consensus       126 ~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~  200 (210)
T cd03269         126 VEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLL  200 (210)
T ss_pred             HhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhhhEEEE
Confidence            4689999999999999999999999999999999999999999999988654 7899999999998865 787653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2e-25  Score=148.58  Aligned_cols=74  Identities=28%  Similarity=0.521  Sum_probs=67.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +|+++.
T Consensus       135 ~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~  209 (237)
T PRK11614        135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYV  209 (237)
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEE
Confidence            4689999999999999999999999999999999999999999999998654 8999999999998765 788653

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.93  E-value=2.9e-25  Score=146.67  Aligned_cols=74  Identities=30%  Similarity=0.399  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+.+++.. +|+++.
T Consensus       147 ~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~~~~~~~~d~i~~  221 (224)
T TIGR02324       147 PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDEEVRELVADRVMD  221 (224)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcceeEe
Confidence            578999999999999999999999999999999999999999999999854 48999999999998864 888764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.5e-25  Score=151.56  Aligned_cols=74  Identities=32%  Similarity=0.574  Sum_probs=67.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++ |.|||++||+++++.. +|+++.
T Consensus       143 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~  217 (280)
T PRK13649        143 PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYV  217 (280)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEE
Confidence            5689999999999999999999999999999999999999999999998654 8999999999998865 787643

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.93  E-value=2.7e-25  Score=149.61  Aligned_cols=74  Identities=26%  Similarity=0.410  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +|+++
T Consensus       138 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~  212 (254)
T PRK10418        138 PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVA  212 (254)
T ss_pred             CcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEE
Confidence            468999999999999999999999999999999999999999999999876568999999999999865 78764

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.8e-25  Score=152.01  Aligned_cols=75  Identities=36%  Similarity=0.515  Sum_probs=69.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.+++++.|.|||++||+++++.. +|+++.
T Consensus       139 ~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~  214 (283)
T PRK13636        139 THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFV  214 (283)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876558999999999999875 888653

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2e-25  Score=158.55  Aligned_cols=76  Identities=34%  Similarity=0.438  Sum_probs=69.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|+++||||||++||+..++.+.+.+.++.++.|.|+|++||+.+++.. +|+++.
T Consensus       146 ~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~v  222 (377)
T PRK11607        146 KPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAI  222 (377)
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999877678999999999999876 888653

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.93  E-value=2.2e-25  Score=162.23  Aligned_cols=75  Identities=28%  Similarity=0.437  Sum_probs=69.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|.++.++.|.|||++||+++++.. +|+++.
T Consensus       166 ~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~  241 (520)
T TIGR03269       166 ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIW  241 (520)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence            678999999999999999999999999999999999999999999999876668999999999999875 788754

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=3e-25  Score=151.30  Aligned_cols=74  Identities=31%  Similarity=0.429  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +..||+|||||++|||||+.+|+++||||||+|||+.++..+++.+.++.+ .|.|||++||+++++..+|+++.
T Consensus       134 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~~~~~~d~v~~  207 (274)
T PRK13644        134 PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLEELHDADRIIV  207 (274)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHhhCCEEEE
Confidence            578999999999999999999999999999999999999999999998864 48999999999999877888653

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.93  E-value=3e-25  Score=150.31  Aligned_cols=75  Identities=24%  Similarity=0.374  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus       141 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~  216 (265)
T PRK10253        141 VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIA  216 (265)
T ss_pred             cccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999866558999999999998865 787653

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.93  E-value=2.3e-25  Score=162.52  Aligned_cols=76  Identities=30%  Similarity=0.486  Sum_probs=69.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      .+.+|||||||||+|||||+.+|+++||||||+|||+.+++.+++.|.+++++.|.|||++||+++++.. +|+++.
T Consensus       422 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~  498 (529)
T PRK15134        422 YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIV  498 (529)
T ss_pred             CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEE
Confidence            3679999999999999999999999999999999999999999999999876558999999999999876 888754

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.93  E-value=3e-25  Score=147.17  Aligned_cols=73  Identities=29%  Similarity=0.467  Sum_probs=67.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||+|||||++|||||+.+|+++|+||||+|||+.++..+.+.+.++.+ .|.|+|++||+++++.. +|+++
T Consensus       111 ~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvii~sH~~~~~~~~~d~i~  184 (223)
T TIGR03771       111 VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAG-AGTAILMTTHDLAQAMATCDRVV  184 (223)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEE
Confidence            568999999999999999999999999999999999999999999998865 48999999999998865 78765

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.93  E-value=3.7e-25  Score=142.44  Aligned_cols=72  Identities=40%  Similarity=0.632  Sum_probs=66.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ||+|||||++|||||+.+|+++||||||+|||+.++..+.+.+.+++++.|.|+|++||+++++.. +|+++.
T Consensus       101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~  173 (178)
T cd03229         101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVV  173 (178)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence            899999999999999999999999999999999999999999999876547899999999999875 788653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.93  E-value=2.3e-25  Score=145.99  Aligned_cols=73  Identities=40%  Similarity=0.611  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++++  +.|+|++||+++++.. +|+++.
T Consensus       128 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~  201 (211)
T cd03264         128 IGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAV  201 (211)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999998854  4899999999999875 787653

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.93  E-value=3.5e-25  Score=149.19  Aligned_cols=74  Identities=39%  Similarity=0.581  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus       150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~~  224 (257)
T PRK10619        150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIF  224 (257)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEE
Confidence            568999999999999999999999999999999999999999999999865 48999999999999886 788653

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=3.3e-25  Score=151.13  Aligned_cols=75  Identities=29%  Similarity=0.490  Sum_probs=68.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       135 ~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~  210 (277)
T PRK13652        135 PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYV  210 (277)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876558999999999999864 888653

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.93  E-value=3.3e-25  Score=147.75  Aligned_cols=73  Identities=37%  Similarity=0.586  Sum_probs=67.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.+.++.++ |.|+|++||+++++.. +|+++
T Consensus       134 ~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~  207 (240)
T PRK09493        134 PSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLI  207 (240)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEE
Confidence            5689999999999999999999999999999999999999999999988654 8999999999999865 78764

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.93  E-value=4.5e-25  Score=140.75  Aligned_cols=71  Identities=28%  Similarity=0.432  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ||+||+||+++|||++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +|+++.
T Consensus        83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~~~~  154 (163)
T cd03216          83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTV  154 (163)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            9999999999999999999999999999999999999999999988644 8899999999998765 787653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=3.6e-25  Score=150.95  Aligned_cols=75  Identities=33%  Similarity=0.453  Sum_probs=69.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.+++++.|.|+|++||+++++..+|+++.
T Consensus       138 ~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~  212 (277)
T PRK13642        138 PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILV  212 (277)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876558999999999999877888653

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.5e-25  Score=165.41  Aligned_cols=76  Identities=26%  Similarity=0.408  Sum_probs=70.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|++|||||||+|||+..+..++++|.++.++.|.|||++|||++++.. +|+++.
T Consensus       460 ~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~v  536 (623)
T PRK10261        460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAV  536 (623)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            3679999999999999999999999999999999999999999999999876668999999999999876 888764

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.92  E-value=4.2e-25  Score=141.65  Aligned_cols=71  Identities=45%  Similarity=0.815  Sum_probs=65.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ||+||+||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++ |.|+|++||+.+++.. +|+++.
T Consensus        96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~  167 (173)
T cd03230          96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAI  167 (173)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEE
Confidence            8999999999999999999999999999999999999999999998765 8999999999998875 787653

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=4.1e-25  Score=148.70  Aligned_cols=74  Identities=24%  Similarity=0.394  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||+||++||||++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +|+++.
T Consensus       136 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~  210 (255)
T PRK11231        136 LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVV  210 (255)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEE
Confidence            5789999999999999999999999999999999999999999999988654 8999999999999865 787653

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=3.6e-25  Score=150.17  Aligned_cols=75  Identities=36%  Similarity=0.492  Sum_probs=68.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+|||||++||||++.+|+++||||||+|||+.+++.+++.+.++.++.|.|+|++||+++++..+|+++.
T Consensus       140 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~  214 (269)
T PRK13648        140 PNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIV  214 (269)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEE
Confidence            568999999999999999999999999999999999999999999999866558999999999998877888653

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.92  E-value=1.8e-25  Score=164.06  Aligned_cols=77  Identities=31%  Similarity=0.428  Sum_probs=72.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecC
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDN   77 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~   77 (79)
                      .|.+||||||||++|||||+.+|+++++||||+.||+..+..+.+.|.++.++.|.|++|||||+.++++ ||+++.-
T Consensus       426 yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm  503 (539)
T COG1123         426 YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVM  503 (539)
T ss_pred             CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEE
Confidence            4789999999999999999999999999999999999999999999999988889999999999999988 8987653

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.92  E-value=4.2e-25  Score=149.24  Aligned_cols=75  Identities=29%  Similarity=0.472  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.++..+++.|.++.++.|.|||++||+++++.. +|+++.
T Consensus       118 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~  193 (251)
T PRK09544        118 MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLC  193 (251)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999866557899999999999865 787653

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.92  E-value=4.5e-25  Score=148.16  Aligned_cols=75  Identities=32%  Similarity=0.465  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||+||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus       144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~  219 (252)
T TIGR03005       144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCF  219 (252)
T ss_pred             hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence            568999999999999999999999999999999999999999999999876558999999999999865 787653

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=5.4e-25  Score=148.80  Aligned_cols=75  Identities=25%  Similarity=0.474  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||+||++|||+|+.+|+++||||||+|||+.++..+.+.+.+++++.|.|+|++||+++++.. +|+++.
T Consensus       148 ~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~  223 (261)
T PRK14258        148 ALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAF  223 (261)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEE
Confidence            468999999999999999999999999999999999999999999998865458999999999999875 788653

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.4e-25  Score=148.09  Aligned_cols=73  Identities=33%  Similarity=0.550  Sum_probs=66.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|||++||+++++.. +|+++.
T Consensus       147 ~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~  220 (253)
T PRK14242        147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAF  220 (253)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999999984 4 6899999999999865 788653

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.92  E-value=3e-25  Score=161.51  Aligned_cols=75  Identities=24%  Similarity=0.431  Sum_probs=69.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.+++++.|.|||++||+++++.. +|+++.
T Consensus       425 ~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~  500 (520)
T TIGR03269       425 PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAAL  500 (520)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999876568999999999999876 788754

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3.4e-25  Score=164.73  Aligned_cols=76  Identities=30%  Similarity=0.413  Sum_probs=70.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|++|||||||++||+..+.++.++++++.++.|.|||++|||++++.. +|+++.
T Consensus       165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v  241 (623)
T PRK10261        165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV  241 (623)
T ss_pred             CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999876668999999999999876 888765

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=2.9e-25  Score=161.33  Aligned_cols=74  Identities=27%  Similarity=0.464  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+++++.+++++ |.|||++||+++++.. ||+++.
T Consensus       403 ~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d~v~~  477 (506)
T PRK13549        403 IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLV  477 (506)
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999998654 8999999999999876 888653

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=2.6e-25  Score=154.70  Aligned_cols=76  Identities=33%  Similarity=0.463  Sum_probs=71.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      .|.+|||||||||++||||+..|++||||||+++||...+.++...|.++..+.|.|+++||||.+++.. +|+++.
T Consensus       134 yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvv  210 (345)
T COG1118         134 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVV  210 (345)
T ss_pred             CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEE
Confidence            3789999999999999999999999999999999999999999999999988779999999999999987 898764

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.92  E-value=3.8e-25  Score=157.53  Aligned_cols=75  Identities=32%  Similarity=0.550  Sum_probs=69.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.|.++.++.|.|+|++||+++++.. +|+++.
T Consensus       162 ~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~v  237 (382)
T TIGR03415       162 PGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAI  237 (382)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999876668999999999999865 788653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.92  E-value=5.5e-25  Score=146.46  Aligned_cols=71  Identities=23%  Similarity=0.338  Sum_probs=65.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh--hccee
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ--AHTVI   75 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~--~d~i~   75 (79)
                      +||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.+ .|.|||++||+++++..  +|+++
T Consensus       144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~  216 (243)
T TIGR01978       144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVH  216 (243)
T ss_pred             CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEE
Confidence            5999999999999999999999999999999999999999999999864 47899999999999875  58765

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.92  E-value=2.3e-25  Score=144.24  Aligned_cols=65  Identities=35%  Similarity=0.610  Sum_probs=60.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++ |.|||++||++++
T Consensus       125 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tili~sH~~~~  189 (190)
T TIGR01166       125 THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE-GMTVVISTHDVDL  189 (190)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeecccc
Confidence            5789999999999999999999999999999999999999999999998654 8999999999865

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.92  E-value=4.6e-25  Score=147.07  Aligned_cols=73  Identities=27%  Similarity=0.398  Sum_probs=67.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||+||++||||++.+|+++||||||+|||+.++..+++.+.++.+  +.|+|++||+++++.. +|+++.
T Consensus       141 ~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~  214 (242)
T TIGR03411       141 AGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTV  214 (242)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999854  6899999999999875 887653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=5.4e-25  Score=147.89  Aligned_cols=73  Identities=30%  Similarity=0.552  Sum_probs=66.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++. + +.|+|++||+++++.. +|+++.
T Consensus       148 ~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~  221 (254)
T PRK14273        148 ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAF  221 (254)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            57899999999999999999999999999999999999999999999984 4 6899999999999865 788653

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.92  E-value=5.7e-25  Score=141.98  Aligned_cols=71  Identities=31%  Similarity=0.511  Sum_probs=65.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ||+|||||++||||++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +|+++.
T Consensus       105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~v~~  176 (182)
T cd03215         105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILV  176 (182)
T ss_pred             cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            8999999999999999999999999999999999999999999988654 7999999999998876 787653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=5.5e-25  Score=148.43  Aligned_cols=73  Identities=29%  Similarity=0.515  Sum_probs=66.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++. + |.|||++||+++++.. +|+++.
T Consensus       152 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~  225 (258)
T PRK14268        152 ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGF  225 (258)
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999999884 4 6899999999999865 788653

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=5.2e-25  Score=149.66  Aligned_cols=74  Identities=38%  Similarity=0.523  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      +.+|||||+||++|||||+.+|+++||||||+|||+.+++.+++.+.++.++.+.|+|++||+++++..+|+++
T Consensus       140 ~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~  213 (271)
T PRK13632        140 PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVI  213 (271)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEE
Confidence            57899999999999999999999999999999999999999999999986654689999999999887788764

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.92  E-value=5.4e-25  Score=146.43  Aligned_cols=73  Identities=27%  Similarity=0.444  Sum_probs=67.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.  .|.|+|++||+++++..+|+++.
T Consensus       137 ~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~~~~~d~v~~  209 (238)
T cd03249         137 GSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTIRNADLIAV  209 (238)
T ss_pred             CccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHhhCCEEEE
Confidence            46899999999999999999999999999999999999999999999884  48999999999999877888653

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.92  E-value=4.9e-25  Score=157.76  Aligned_cols=73  Identities=26%  Similarity=0.394  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||||||||++|||||+++|+++||||||+|||+..+.+++++|+++++ .|.|||++||+++++.. +|+++
T Consensus       137 ~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii  210 (402)
T PRK09536        137 VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELV  210 (402)
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEE
Confidence            568999999999999999999999999999999999999999999999975 48899999999999965 88865

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=5.8e-25  Score=150.36  Aligned_cols=75  Identities=37%  Similarity=0.514  Sum_probs=69.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+||+||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++..+|+++.
T Consensus       141 ~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~  215 (282)
T PRK13640        141 PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLV  215 (282)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876558999999999999877888653

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3.9e-25  Score=160.62  Aligned_cols=74  Identities=24%  Similarity=0.397  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|+++||||||+|||+.+++.+.+.|.++++ .|.|||++|||++++.. +|+++.
T Consensus       407 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~~  481 (510)
T PRK09700        407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELPEIITVCDRIAV  481 (510)
T ss_pred             cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEEE
Confidence            578999999999999999999999999999999999999999999999865 48999999999998876 888654

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.92  E-value=4.9e-25  Score=144.69  Aligned_cols=73  Identities=26%  Similarity=0.240  Sum_probs=66.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +++||||||||++||||++.+|+++||||||+|||+.+++.+.+.|.++.++ |.|+|++||+.+++.. |+++.
T Consensus       125 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~-~~~~~  197 (207)
T PRK13539        125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ-GGIVIAATHIPLGLPG-ARELD  197 (207)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCchhhcc-CcEEe
Confidence            4689999999999999999999999999999999999999999999988654 8999999999999887 76653

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.92  E-value=6.6e-25  Score=146.97  Aligned_cols=73  Identities=34%  Similarity=0.563  Sum_probs=66.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+  +.|+|++||+++++.. +|+++.
T Consensus       142 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~  215 (247)
T TIGR00972       142 ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAF  215 (247)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999854  4899999999998865 888653

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.92  E-value=6.1e-25  Score=141.30  Aligned_cols=73  Identities=27%  Similarity=0.550  Sum_probs=66.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+||+||++||||++.+|+++||||||+|||+.+++.+++.+.++. + +.|+|++||+++++..+|+++.
T Consensus        96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~~~~  168 (178)
T cd03247          96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTGIEHMDKILF  168 (178)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHHhCCEEEE
Confidence            46899999999999999999999999999999999999999999999874 4 7899999999999877887653

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.92  E-value=6.5e-25  Score=145.12  Aligned_cols=73  Identities=30%  Similarity=0.504  Sum_probs=67.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||+|+.+|+++||||||+|||+..++.+.+.+.++. + +.|+|++||+++++..+|+++.
T Consensus       148 ~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~i~~  220 (226)
T cd03248         148 GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWP-E-RRTVLVIAHRLSTVERADQILV  220 (226)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEECCHHHHHhCCEEEE
Confidence            57899999999999999999999999999999999999999999999875 3 5899999999999877888754

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.92  E-value=6e-25  Score=145.36  Aligned_cols=73  Identities=26%  Similarity=0.424  Sum_probs=67.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.+++.+++.+.++. + |.|||++||+++++..+|+++.
T Consensus       137 ~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~i~~  209 (229)
T cd03254         137 GGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIKNADKILV  209 (229)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhhCCEEEE
Confidence            47899999999999999999999999999999999999999999999874 4 7999999999999877887653

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.92  E-value=7e-25  Score=148.17  Aligned_cols=75  Identities=28%  Similarity=0.399  Sum_probs=67.8

Q ss_pred             CCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634           2 EISSRGGQQRRVSFAVALM------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i   74 (79)
                      +.+||||||||++|||||+      .+|+++||||||+|||+.++..+.+.|.++.++.|.|||++||+++++.. +|++
T Consensus       132 ~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i  211 (258)
T PRK13548        132 YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRI  211 (258)
T ss_pred             cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEE
Confidence            5789999999999999999      59999999999999999999999999999864458899999999999875 8886


Q ss_pred             ec
Q psy5634          75 ID   76 (79)
Q Consensus        75 ~~   76 (79)
                      +.
T Consensus       212 ~~  213 (258)
T PRK13548        212 VL  213 (258)
T ss_pred             EE
Confidence            53

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.92  E-value=7.2e-25  Score=146.41  Aligned_cols=71  Identities=27%  Similarity=0.388  Sum_probs=65.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh--hccee
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ--AHTVI   75 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~--~d~i~   75 (79)
                      +||||||||++||||++.+|+++||||||+|||+.++..+.+.+.++.+ .|.|||++||+++++..  +|+++
T Consensus       145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~  217 (248)
T PRK09580        145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVH  217 (248)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEE
Confidence            7999999999999999999999999999999999999999999998854 47899999999999876  57754

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.92  E-value=8.9e-25  Score=141.88  Aligned_cols=74  Identities=27%  Similarity=0.411  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHD--PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~--p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+|||||++||||++.+  |+++||||||++||+..++.+.+.+.++++ .|.|||++||+++++..+|+++.
T Consensus        85 ~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~~~~~d~i~~  160 (176)
T cd03238          85 LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLDVLSSADWIID  160 (176)
T ss_pred             cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhCCEEEE
Confidence            578999999999999999999  999999999999999999999999998864 58999999999999877888754

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=7.1e-25  Score=146.33  Aligned_cols=73  Identities=38%  Similarity=0.620  Sum_probs=67.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+.++.+ .|.|+|++||+.+++.. +|+++
T Consensus       139 ~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~  212 (242)
T PRK11124        139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVV  212 (242)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEE
Confidence            568999999999999999999999999999999999999999999998854 48999999999999865 78764

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.92  E-value=7.7e-25  Score=148.90  Aligned_cols=73  Identities=27%  Similarity=0.451  Sum_probs=67.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.+++++ |.|||++||+++++.. +|+++
T Consensus       140 ~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-g~tviivsH~~~~~~~~~d~v~  213 (272)
T PRK15056        140 IGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTV  213 (272)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEE
Confidence            5789999999999999999999999999999999999999999999998654 8999999999998865 77764

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.92  E-value=6.5e-25  Score=145.59  Aligned_cols=73  Identities=29%  Similarity=0.502  Sum_probs=67.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++. + +.|||++||+++++..+|+++.
T Consensus       136 ~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~v~~  208 (234)
T cd03251         136 GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIENADRIVV  208 (234)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhhCCEEEE
Confidence            56899999999999999999999999999999999999999999999884 4 7899999999999877888753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=7.4e-25  Score=146.95  Aligned_cols=73  Identities=26%  Similarity=0.502  Sum_probs=66.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++. + +.|||++||+++++.. +|+++.
T Consensus       144 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~  217 (250)
T PRK14245        144 AFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAF  217 (250)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEE
Confidence            56899999999999999999999999999999999999999999999984 4 6899999999998865 888653

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.92  E-value=5.7e-25  Score=159.03  Aligned_cols=74  Identities=27%  Similarity=0.367  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||+||+.+|+++||||||+|||+.+++.+.+.|.++.++ |.|||++||+++++.. +|+++.
T Consensus       133 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~~~~~~~d~v~~  207 (490)
T PRK10938        133 FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGV  207 (490)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEE
Confidence            6799999999999999999999999999999999999999999999998654 8999999999999876 787653

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.92  E-value=5.2e-25  Score=159.83  Aligned_cols=74  Identities=23%  Similarity=0.410  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.|.+++++ |.|||++|||++++.. +|+++.
T Consensus       394 ~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~~  468 (501)
T PRK11288        394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVV  468 (501)
T ss_pred             cccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHhhCCEEEE
Confidence            5789999999999999999999999999999999999999999999998654 8899999999999976 788653

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.92  E-value=2.7e-25  Score=156.19  Aligned_cols=76  Identities=30%  Similarity=0.456  Sum_probs=71.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +|.+|||||||||++||||+++|+++|||||+|+||...+..+...|+++.++.|.|+|+||||..++.. +|++..
T Consensus       130 ~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~V  206 (338)
T COG3839         130 KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVV  206 (338)
T ss_pred             CcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEE
Confidence            4789999999999999999999999999999999999999999999999988889999999999999987 888754

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.92  E-value=6.8e-25  Score=145.64  Aligned_cols=73  Identities=27%  Similarity=0.498  Sum_probs=67.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + |.|+|++||+.+++..+|+++.
T Consensus       135 ~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~d~~~~  207 (236)
T cd03253         135 GLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLSTIVNADKIIV  207 (236)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHhCCEEEE
Confidence            46899999999999999999999999999999999999999999999885 4 8999999999999877888653

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.4e-25  Score=159.77  Aligned_cols=74  Identities=30%  Similarity=0.468  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||+++.+|+++||||||+|||+.+++.+++.+.++.++ |.|||++|||++++.. +|+++.
T Consensus       389 ~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d~v~~  463 (491)
T PRK10982        389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILV  463 (491)
T ss_pred             cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC-CCEEEEECCChHHHHhhCCEEEE
Confidence            6789999999999999999999999999999999999999999999988654 8999999999999876 788754

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.92  E-value=5.4e-25  Score=159.47  Aligned_cols=74  Identities=28%  Similarity=0.458  Sum_probs=68.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.+.+++++ |.|||++|||++++.. +|+++.
T Consensus       401 ~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~v~~  475 (500)
T TIGR02633       401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLV  475 (500)
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999998654 8999999999999876 788653

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.92  E-value=6.6e-25  Score=145.00  Aligned_cols=74  Identities=34%  Similarity=0.515  Sum_probs=67.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+||+||++||||++.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus       122 ~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~~~~~~~d~i~~  196 (223)
T TIGR03740       122 AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILSEVQQLADHIGI  196 (223)
T ss_pred             HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEE
Confidence            468999999999999999999999999999999999999999999999864 48899999999999865 888653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.92  E-value=8.2e-25  Score=144.45  Aligned_cols=75  Identities=28%  Similarity=0.467  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+|||||++|||+|+.+|+++||||||+|||+.++..+.+.|.++.++.+.|+|++||+++....+|+++.
T Consensus       139 ~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~  213 (220)
T TIGR02982       139 PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVH  213 (220)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEE
Confidence            568999999999999999999999999999999999999999999999876558999999999987666888753

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=8.7e-25  Score=146.47  Aligned_cols=73  Identities=32%  Similarity=0.497  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++. + |.|+|++||+++++.. +|+++.
T Consensus       144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~  217 (250)
T PRK14247        144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAF  217 (250)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEE
Confidence            56899999999999999999999999999999999999999999999884 4 7899999999998865 787653

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.92  E-value=3.8e-25  Score=154.73  Aligned_cols=75  Identities=32%  Similarity=0.573  Sum_probs=70.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +|.+|||||||||.|||||+.+|+++|+|||||+|||--+.++.+.|.++.++.++||+|+|||++++.+ .|+|.
T Consensus       161 yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIa  236 (386)
T COG4175         161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIA  236 (386)
T ss_pred             CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEE
Confidence            4789999999999999999999999999999999999999999999999988889999999999999977 67753

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.92  E-value=1.1e-24  Score=148.09  Aligned_cols=75  Identities=28%  Similarity=0.412  Sum_probs=68.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|+|++||+++++.. +|+++.
T Consensus       149 ~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~  224 (268)
T PRK10419        149 PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMV  224 (268)
T ss_pred             CccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999876558999999999999875 787653

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.92  E-value=7.6e-25  Score=144.15  Aligned_cols=73  Identities=37%  Similarity=0.752  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.+  +.|+|++||+++++.. +|+++.
T Consensus       131 ~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~  204 (220)
T cd03263         131 ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAI  204 (220)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEE
Confidence            468999999999999999999999999999999999999999999998854  4899999999999875 787653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1e-24  Score=148.64  Aligned_cols=74  Identities=36%  Similarity=0.557  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.+.++.++ |.|||++||+++++.. +|+++.
T Consensus       135 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~  209 (275)
T PRK13639        135 PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYV  209 (275)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999998654 8999999999999875 888653

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=9.9e-25  Score=147.83  Aligned_cols=73  Identities=30%  Similarity=0.530  Sum_probs=66.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++. + +.|||++||+++++.. +|+++.
T Consensus       162 ~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~v~~  235 (268)
T PRK14248        162 ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK-E-EYSIIIVTHNMQQALRVSDRTAF  235 (268)
T ss_pred             cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEEeCHHHHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999999985 3 5899999999998865 788653

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.92  E-value=7.1e-25  Score=144.75  Aligned_cols=75  Identities=33%  Similarity=0.552  Sum_probs=68.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      .|..|||||+||++|||||+.+|+++++||||++|||....++++.+.+++++ |+|.+++||.|.++.. +..++.
T Consensus       149 YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~f  224 (256)
T COG4598         149 YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIF  224 (256)
T ss_pred             CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEE
Confidence            36789999999999999999999999999999999999999999999999765 8999999999999987 444443

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=9.5e-25  Score=145.63  Aligned_cols=74  Identities=32%  Similarity=0.493  Sum_probs=66.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.+.++.+ .|.|+|++||+++++.. +|+++.
T Consensus       135 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~  209 (241)
T PRK10895        135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYI  209 (241)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEE
Confidence            468999999999999999999999999999999999999999999998754 48999999999987765 787653

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=7e-25  Score=143.56  Aligned_cols=76  Identities=26%  Similarity=0.412  Sum_probs=72.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      .|.+||||++|||+||||++..|++++.||||.+||..+.+++.+++..++++.|.|.++||||...+.+|+|.+.
T Consensus       143 yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r  218 (228)
T COG4181         143 YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLR  218 (228)
T ss_pred             CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheee
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999998765

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.92  E-value=5.8e-25  Score=160.09  Aligned_cols=74  Identities=36%  Similarity=0.527  Sum_probs=68.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|.+++++ |.|||++|||++++.. +|+++.
T Consensus       401 ~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~~  475 (510)
T PRK15439        401 ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLV  475 (510)
T ss_pred             cccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999998654 8999999999999976 788754

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.92  E-value=7.8e-25  Score=159.08  Aligned_cols=74  Identities=19%  Similarity=0.297  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|||++||+++++.. +|+++.
T Consensus       143 ~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~d~v~~  217 (510)
T PRK09700        143 VANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTV  217 (510)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999998654 8999999999999876 788653

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.92  E-value=7.7e-25  Score=158.68  Aligned_cols=74  Identities=24%  Similarity=0.333  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus       139 ~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~~~~~~~d~i~~  213 (500)
T TIGR02633       139 VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICV  213 (500)
T ss_pred             hhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999864 48999999999999876 788754

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK13409 putative ATPase RIL; Provisional

Probab=99.92  E-value=8.8e-25  Score=162.14  Aligned_cols=76  Identities=24%  Similarity=0.365  Sum_probs=70.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      .+.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++++++.|.|+|++|||++++.. +|+++.
T Consensus       450 ~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrviv  526 (590)
T PRK13409        450 NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMV  526 (590)
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999977668999999999999876 888753

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.92  E-value=1.3e-24  Score=138.98  Aligned_cols=71  Identities=30%  Similarity=0.451  Sum_probs=64.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+|||||+++|||++.+|+++||||||+|||+..++.+.+.+.++    +.|+|++||+.+....+|+++.
T Consensus        89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~~~~~~d~i~~  159 (166)
T cd03223          89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPSLWKFHDRVLD  159 (166)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChhHHhhCCEEEE
Confidence            5789999999999999999999999999999999999999999988865    5799999999987766888753

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.92  E-value=7.4e-25  Score=159.05  Aligned_cols=74  Identities=30%  Similarity=0.464  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++ |.|||++||+++++.. +|+++.
T Consensus       393 ~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~  467 (501)
T PRK10762        393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILV  467 (501)
T ss_pred             hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEE
Confidence            5789999999999999999999999999999999999999999999998654 8999999999999876 788653

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.3e-24  Score=145.69  Aligned_cols=73  Identities=30%  Similarity=0.513  Sum_probs=66.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|||++||+++++.. +|+++.
T Consensus       146 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sH~~~~~~~~~d~i~~  219 (252)
T PRK14239        146 ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-D-DYTMLLVTRSMQQASRISDRTGF  219 (252)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-h-CCeEEEEECCHHHHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999999885 3 5899999999998765 788653

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.92  E-value=1.5e-24  Score=144.61  Aligned_cols=74  Identities=27%  Similarity=0.455  Sum_probs=67.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||+|+.+|  +++||||||+|||+..+..+.+.+.++++ .|.|+|++||+++++..+|+++.
T Consensus       135 ~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~~~~~~d~i~~  210 (226)
T cd03270         135 APTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDEDTIRAADHVID  210 (226)
T ss_pred             cCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHHHHHhCCEEEE
Confidence            6789999999999999999998  59999999999999999999999998854 48999999999998877888754

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.92  E-value=1.3e-24  Score=144.57  Aligned_cols=75  Identities=35%  Similarity=0.474  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+||+||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       128 ~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~  203 (232)
T cd03300         128 PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAV  203 (232)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEE
Confidence            568999999999999999999999999999999999999999999999866558999999999998865 788653

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.92  E-value=1.1e-24  Score=143.58  Aligned_cols=73  Identities=19%  Similarity=0.221  Sum_probs=66.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||+|||||++|||+++.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++++.. +++++
T Consensus       135 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~~~i~  208 (214)
T PRK13543        135 VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG-GGAALVTTHGAYAAPPVRTRML  208 (214)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecChhhhhhhcceEE
Confidence            4689999999999999999999999999999999999999999999988654 7899999999999876 77765

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.92  E-value=1.6e-24  Score=141.73  Aligned_cols=73  Identities=27%  Similarity=0.406  Sum_probs=66.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH--hhcceec
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR--QAHTVID   76 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~--~~d~i~~   76 (79)
                      .+||+||+||++||||++.+|+++||||||+|||+.++..+.+.+.++.+ .|.|+|++||+++.+.  .+|+++.
T Consensus       103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~  177 (200)
T cd03217         103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQRLLDYIKPDRVHV  177 (200)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhhCCEEEE
Confidence            58999999999999999999999999999999999999999999999864 4789999999999987  4788653

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.2e-24  Score=147.92  Aligned_cols=73  Identities=29%  Similarity=0.499  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|||++||+++++.. +|+++.
T Consensus       152 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~  225 (269)
T PRK14259        152 GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAF  225 (269)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEE
Confidence            46899999999999999999999999999999999999999999999884 3 6899999999998865 888653

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.92  E-value=2.9e-25  Score=156.70  Aligned_cols=76  Identities=33%  Similarity=0.487  Sum_probs=71.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +|.+|||||||||+|||||+.+|+++|||||+++||...+.++...++++.++.|.|+|+||||.+++.. +|++..
T Consensus       133 ~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~V  209 (352)
T COG3842         133 KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAV  209 (352)
T ss_pred             ChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEE
Confidence            4789999999999999999999999999999999999999999999999988889999999999999976 788754

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.92  E-value=1.5e-24  Score=145.33  Aligned_cols=72  Identities=25%  Similarity=0.322  Sum_probs=65.9

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh--hcceec
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ--AHTVID   76 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~--~d~i~~   76 (79)
                      +|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.+ .|.|||++||+++++..  +|+++.
T Consensus       151 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~  224 (252)
T CHL00131        151 GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRLLDYIKPDYVHV  224 (252)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEE
Confidence            5999999999999999999999999999999999999999999999864 48999999999998875  687653

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.92  E-value=9.2e-25  Score=158.54  Aligned_cols=74  Identities=19%  Similarity=0.299  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.+.++.+ .|.|||++||+++++.. +|+++.
T Consensus       139 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~~~~~~~~d~i~~  213 (501)
T PRK10762        139 VGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLKEIFEICDDVTV  213 (501)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999865 48999999999999876 788753

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.92  E-value=1.9e-24  Score=140.46  Aligned_cols=72  Identities=22%  Similarity=0.399  Sum_probs=65.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ||+|||||+++||+++.+|++++|||||++||+.+++.+.+.+.++.++.+.|+|++||+++++.. +|+++.
T Consensus        72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~  144 (177)
T cd03222          72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHV  144 (177)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEE
Confidence            899999999999999999999999999999999999999999998865545899999999999885 787653

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.92  E-value=1.5e-24  Score=146.06  Aligned_cols=74  Identities=28%  Similarity=0.395  Sum_probs=67.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus       135 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~  209 (256)
T TIGR03873       135 MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLNLAASYCDHVVV  209 (256)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999864 47899999999999965 888653

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.3e-24  Score=145.78  Aligned_cols=73  Identities=32%  Similarity=0.490  Sum_probs=66.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+  +.|+|++||+++++.. +|+++.
T Consensus       147 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~  220 (253)
T PRK14267        147 PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAF  220 (253)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEE
Confidence            568999999999999999999999999999999999999999999999853  5899999999999865 787653

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.92  E-value=1.6e-24  Score=144.48  Aligned_cols=75  Identities=36%  Similarity=0.478  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+||+||++||||++.+|++++|||||+|||+.+++.+.+.+.++..+.|.|+|++||+++++.. +|+++.
T Consensus       127 ~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~  202 (235)
T cd03299         127 PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAI  202 (235)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999865558999999999999875 787653

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.92  E-value=1.5e-24  Score=138.88  Aligned_cols=70  Identities=39%  Similarity=0.602  Sum_probs=64.8

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      ||+|||||++||||++.+|+++||||||+|||+.++..+.+.+.++. + +.|+|++||+++++..+|+++.
T Consensus        97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~~~~  166 (171)
T cd03228          97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLSTIRDADRIIV  166 (171)
T ss_pred             hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHHhCCEEEE
Confidence            89999999999999999999999999999999999999999999884 3 6899999999999877887653

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.92  E-value=1.2e-24  Score=158.36  Aligned_cols=74  Identities=24%  Similarity=0.393  Sum_probs=68.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|||++||+++++.. +|+++.
T Consensus       138 ~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~i~~  212 (510)
T PRK15439        138 AGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISV  212 (510)
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999998654 8999999999999875 888653

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.7e-24  Score=146.90  Aligned_cols=73  Identities=27%  Similarity=0.500  Sum_probs=66.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|||++||+++++.. +|+++.
T Consensus       161 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~-~-~~tiiivtH~~~~~~~~~d~v~~  234 (267)
T PRK14235        161 GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR-Q-NYTIVIVTHSMQQAARVSQRTAF  234 (267)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh-c-CCeEEEEEcCHHHHHhhCCEEEE
Confidence            56899999999999999999999999999999999999999999999885 3 5899999999999865 787653

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.6e-24  Score=146.02  Aligned_cols=73  Identities=27%  Similarity=0.495  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|||++||+++++.. +|+++.
T Consensus       146 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~  219 (258)
T PRK14241        146 GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAF  219 (258)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999999884 3 5899999999999865 888753

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.92  E-value=9.6e-25  Score=150.51  Aligned_cols=73  Identities=41%  Similarity=0.599  Sum_probs=67.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++||+||+.+|+++||||||+|||+.+++.+++.+.++. + +.|||++||+++++.. ||+++.
T Consensus       131 ~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~  204 (301)
T TIGR03522       131 IGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVII  204 (301)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEE
Confidence            46899999999999999999999999999999999999999999999884 4 6899999999999876 888653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.8e-24  Score=146.01  Aligned_cols=73  Identities=32%  Similarity=0.500  Sum_probs=66.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.++. + +.|||++||+++++.. +|+++.
T Consensus       154 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~  227 (260)
T PRK10744        154 GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAF  227 (260)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999999984 3 6899999999998865 787653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.2e-24  Score=158.11  Aligned_cols=74  Identities=26%  Similarity=0.293  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus       141 ~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~  215 (506)
T PRK13549        141 VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICV  215 (506)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEE
Confidence            568999999999999999999999999999999999999999999999864 48899999999999876 788754

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.92  E-value=1.5e-24  Score=142.01  Aligned_cols=72  Identities=29%  Similarity=0.257  Sum_probs=65.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh-cce
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQA-HTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~-d~i   74 (79)
                      +.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++.+ .|.|+|++||+.+++..+ +++
T Consensus       127 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~i~~~~~~~  199 (204)
T PRK13538        127 VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDLPVASDKVRK  199 (204)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChhhhccCCceE
Confidence            568999999999999999999999999999999999999999999999864 478999999999998764 344

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.92  E-value=1.9e-24  Score=141.51  Aligned_cols=73  Identities=22%  Similarity=0.335  Sum_probs=67.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+||+||++||||++.+|+++||||||+|||+..+..+.+.|.++. + |.|+|++||+++++..+|+++.
T Consensus       123 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~~~~~~d~v~~  195 (207)
T cd03369         123 GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHRLRTIIDYDKILV  195 (207)
T ss_pred             CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhhCCEEEE
Confidence            57899999999999999999999999999999999999999999999873 3 7999999999999877888653

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.9e-24  Score=144.82  Aligned_cols=73  Identities=32%  Similarity=0.548  Sum_probs=66.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++. + +.|||++||+++.+.. +|+++.
T Consensus       144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~  217 (250)
T PRK14240        144 ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAF  217 (250)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEE
Confidence            56899999999999999999999999999999999999999999999884 4 6899999999998866 787653

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.7e-24  Score=145.34  Aligned_cols=73  Identities=32%  Similarity=0.540  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||+|+.+|+++||||||+|||+.+++.+.+.|.++. + |.|||++||+++++.. +|+++.
T Consensus       147 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~  220 (251)
T PRK14244        147 AFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAF  220 (251)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEE
Confidence            46899999999999999999999999999999999999999999999874 4 7999999999999875 787653

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.92  E-value=2.1e-24  Score=142.19  Aligned_cols=74  Identities=27%  Similarity=0.471  Sum_probs=65.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWN--HLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~--~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+|||||++||||++.+|+++||||||+|||+.+++.+++  ++..+ ++.|.|+|++||+.+++..+|+++.
T Consensus       138 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~-~~~~~tii~~sH~~~~~~~~d~i~~  213 (218)
T cd03290         138 GINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL-QDDKRTLVLVTHKLQYLPHADWIIA  213 (218)
T ss_pred             CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHH-hcCCCEEEEEeCChHHHhhCCEEEE
Confidence            46899999999999999999999999999999999999999998  55554 4458999999999999877888654

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.3e-24  Score=144.39  Aligned_cols=73  Identities=30%  Similarity=0.573  Sum_probs=66.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+  +.|||++||+++++.. +|+++.
T Consensus       143 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~  216 (249)
T PRK14253        143 AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAF  216 (249)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999854  4899999999999876 787653

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.3e-24  Score=144.54  Aligned_cols=72  Identities=35%  Similarity=0.594  Sum_probs=66.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||+|||||++|||+|+.+|+++||||||+|||+.++..+.+.|.++.+  +.|+|++||+++++.. +|+++
T Consensus       146 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~  218 (252)
T PRK14255        146 ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQASRISDKTA  218 (252)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEE
Confidence            578999999999999999999999999999999999999999999999854  4799999999999865 78764

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.91  E-value=1.5e-24  Score=159.38  Aligned_cols=73  Identities=29%  Similarity=0.391  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+..  .++|+|++||+++.+..+|+++.
T Consensus       483 G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~~i~~aD~Iiv  555 (588)
T PRK11174        483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLEDLAQWDQIWV  555 (588)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChHHHHhCCEEEE
Confidence            46799999999999999999999999999999999999999999998874  37899999999999999999764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.5e-24  Score=157.03  Aligned_cols=74  Identities=16%  Similarity=0.243  Sum_probs=67.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|||++||+++++.. +|+++.
T Consensus       132 ~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~~~~~~~d~i~~  206 (491)
T PRK10982        132 VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKMEEIFQLCDEITI  206 (491)
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999864 48999999999999876 787653

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.1e-24  Score=146.26  Aligned_cols=73  Identities=30%  Similarity=0.512  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+  +.|||++||+++++.. +|+++.
T Consensus       149 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~  222 (264)
T PRK14243        149 GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAF  222 (264)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999854  4799999999998876 788753

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.5e-24  Score=157.45  Aligned_cols=74  Identities=18%  Similarity=0.278  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus       138 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~i~~  212 (501)
T PRK11288        138 LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAITV  212 (501)
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999865 48999999999999876 787653

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.91  E-value=1.6e-24  Score=141.53  Aligned_cols=75  Identities=24%  Similarity=0.246  Sum_probs=67.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceecC
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDN   77 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~~   77 (79)
                      +.+||+||+||++||||++.+|+++||||||+|||+.+++.+.+.|.++.+ .|.|+|++||+...+..+|..+.+
T Consensus       125 ~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~d~~~~~  199 (200)
T PRK13540        125 CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLPLNKADYEEYH  199 (200)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchhccccchhhcc
Confidence            468999999999999999999999999999999999999999999999754 488999999999998888765443

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.3e-24  Score=144.46  Aligned_cols=73  Identities=34%  Similarity=0.548  Sum_probs=66.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + |.|+|++||+++++.. +|+++.
T Consensus       140 ~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~  213 (246)
T PRK14269        140 ALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAF  213 (246)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEE
Confidence            46899999999999999999999999999999999999999999999874 4 7899999999998865 787653

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.9e-24  Score=144.15  Aligned_cols=73  Identities=30%  Similarity=0.485  Sum_probs=66.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.+.++ ++ +.|||++||+++++.. +|+++.
T Consensus       145 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-~~tilivsh~~~~~~~~~d~i~~  218 (251)
T PRK14249        145 GLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQ-NYTIAIVTHNMQQAARASDWTGF  218 (251)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hc-CCEEEEEeCCHHHHHhhCCEEEE
Confidence            5689999999999999999999999999999999999999999999987 34 7899999999999876 687653

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.7e-24  Score=144.11  Aligned_cols=73  Identities=34%  Similarity=0.526  Sum_probs=66.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.++++. + +.|+|++||+++++.. +|+++.
T Consensus       146 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~  219 (252)
T PRK14272        146 ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSF  219 (252)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999999884 4 6899999999999876 788653

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3.2e-24  Score=143.96  Aligned_cols=73  Identities=29%  Similarity=0.539  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|.++.+  +.|+|++||+++++.. +|+++.
T Consensus       145 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~  218 (251)
T PRK14270        145 ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAF  218 (251)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEE
Confidence            578999999999999999999999999999999999999999999998854  5899999999998876 788653

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.7e-24  Score=146.55  Aligned_cols=73  Identities=27%  Similarity=0.498  Sum_probs=67.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|||++||+++++.. +|+++.
T Consensus       159 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~  232 (274)
T PRK14265        159 GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-E-QYTIIMVTHNMQQASRVADWTAF  232 (274)
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999999985 3 5899999999999875 788754

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.5e-24  Score=144.31  Aligned_cols=73  Identities=32%  Similarity=0.513  Sum_probs=66.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.++. + +.|+|++||+++++.. +|+++.
T Consensus       145 ~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~  218 (251)
T PRK14251        145 AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QYTFIMVTHNLQQAGRISDQTAF  218 (251)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CCeEEEEECCHHHHHhhcCEEEE
Confidence            46899999999999999999999999999999999999999999999884 3 5899999999999865 788653

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3e-24  Score=144.13  Aligned_cols=73  Identities=27%  Similarity=0.496  Sum_probs=66.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+  +.|||++||+++++.. +|+++.
T Consensus       146 ~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~  219 (252)
T PRK14256        146 AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAF  219 (252)
T ss_pred             cCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEE
Confidence            568999999999999999999999999999999999999999999999853  5799999999999865 787653

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.91  E-value=2.7e-24  Score=140.63  Aligned_cols=73  Identities=27%  Similarity=0.277  Sum_probs=64.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH-hhccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR-QAHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~-~~d~i~   75 (79)
                      +.+||||||||++||||++.+|+++||||||+|||+..++.+.+.+.++.+ .|.|+|++||+..... .+++++
T Consensus       123 ~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~~~~~  196 (201)
T cd03231         123 VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDLGLSEAGAREL  196 (201)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchhhhhccceeE
Confidence            568999999999999999999999999999999999999999999998755 4789999999877654 466654

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3e-24  Score=144.74  Aligned_cols=73  Identities=32%  Similarity=0.583  Sum_probs=66.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|.++. + +.|+|++||+++++.. +|+++.
T Consensus       153 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~  226 (259)
T PRK14274        153 ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHNMQQAARVSDQTAF  226 (259)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999999984 4 6899999999998865 787653

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.91  E-value=3.1e-24  Score=141.32  Aligned_cols=72  Identities=24%  Similarity=0.355  Sum_probs=66.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      +.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.++. + +.|+|++||+++++..+|+++
T Consensus       137 ~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~i~  208 (221)
T cd03244         137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-K-DCTVLTIAHRLDTIIDSDRIL  208 (221)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhhCCEEE
Confidence            56899999999999999999999999999999999999999999999874 3 589999999999988788764

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.91  E-value=3.4e-24  Score=141.96  Aligned_cols=74  Identities=36%  Similarity=0.562  Sum_probs=66.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH-HHHH-hhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI-EEAR-QAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~-~~~~-~~d~i~~   76 (79)
                      +.+||+||+||++|||+|+.+|+++||||||+|||+.++..+.+.+.++.++ |.|+|++||++ +++. .+|+++.
T Consensus       141 ~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~  216 (226)
T cd03234         141 VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILL  216 (226)
T ss_pred             ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEE
Confidence            4689999999999999999999999999999999999999999999998654 88999999998 4554 4887653

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3.7e-24  Score=145.61  Aligned_cols=73  Identities=26%  Similarity=0.502  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|.++. + +.|+|++||+++++.. +|+++.
T Consensus       165 ~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivsH~~~~i~~~~d~i~~  238 (271)
T PRK14238        165 AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK-K-DYSIIIVTHNMQQAARISDKTAF  238 (271)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-c-CCEEEEEEcCHHHHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999999885 3 6899999999999865 787653

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.91  E-value=1.9e-24  Score=156.33  Aligned_cols=75  Identities=35%  Similarity=0.465  Sum_probs=67.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh--hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ--AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~--~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.+++++.+.|||++||+++++..  +|+++.
T Consensus       399 ~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~  475 (490)
T PRK10938        399 FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEF  475 (490)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEE
Confidence            578999999999999999999999999999999999999999999999876544679999999999864  576643

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.91  E-value=4e-24  Score=139.44  Aligned_cols=72  Identities=31%  Similarity=0.505  Sum_probs=64.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH-HHHh-hcceec
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE-EARQ-AHTVID   76 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~-~~~~-~d~i~~   76 (79)
                      +||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|+|++||+++ ++.. +|+++.
T Consensus       111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~  184 (194)
T cd03213         111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLL  184 (194)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEE
Confidence            69999999999999999999999999999999999999999999988654 899999999986 5544 787653

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3.7e-24  Score=144.45  Aligned_cols=73  Identities=27%  Similarity=0.471  Sum_probs=66.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|||++||+++++.. +|+++.
T Consensus       148 ~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~i~~~~d~i~~  221 (259)
T PRK14260        148 ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR-S-ELTIAIVTHNMQQATRVSDFTAF  221 (259)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCeEEE
Confidence            46899999999999999999999999999999999999999999999985 3 5899999999999876 787643

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.91  E-value=4.4e-24  Score=143.60  Aligned_cols=73  Identities=23%  Similarity=0.382  Sum_probs=66.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcc
Q psy5634           2 EISSRGGQQRRVSFAVALMH-------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHT   73 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~-------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~   73 (79)
                      +.+||+|||||++|||||+.       +|+++||||||+|||+.++..+.+.+.++.+ .|.|+|++||+++++.. +|+
T Consensus       124 ~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~~~~~~~d~  202 (248)
T PRK03695        124 VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADR  202 (248)
T ss_pred             cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCE
Confidence            57899999999999999997       6799999999999999999999999999865 48999999999998765 787


Q ss_pred             ee
Q psy5634          74 VI   75 (79)
Q Consensus        74 i~   75 (79)
                      ++
T Consensus       203 i~  204 (248)
T PRK03695        203 VW  204 (248)
T ss_pred             EE
Confidence            65

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.91  E-value=3.9e-24  Score=139.20  Aligned_cols=72  Identities=24%  Similarity=0.388  Sum_probs=64.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH-H-Hhhcceec
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE-A-RQAHTVID   76 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~-~-~~~d~i~~   76 (79)
                      +|||||+||++||||++.+|+++|+||||+|||+.++..+++.+.++.+ .|.|+|++||+++. + ..+|+++.
T Consensus       108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~  181 (192)
T cd03232         108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLL  181 (192)
T ss_pred             cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEE
Confidence            6999999999999999999999999999999999999999999998864 48999999999973 4 45788653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3.9e-24  Score=143.34  Aligned_cols=73  Identities=38%  Similarity=0.572  Sum_probs=66.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+||+||++|||||+.+|+++||||||+|||+.++..+.+.+.++. + +.|+|++||+++.+.. +|+++.
T Consensus       144 ~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tili~sH~~~~~~~~~d~i~~  217 (250)
T PRK14262        144 GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-E-NYTIVIVTHNIGQAIRIADYIAF  217 (250)
T ss_pred             hhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-CcEEEEEeCCHHHHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999999985 3 6899999999998765 788653

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.91  E-value=4.1e-24  Score=145.98  Aligned_cols=75  Identities=28%  Similarity=0.409  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-h
Q psy5634           2 EISSRGGQQRRVSFAVALM---------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-A   71 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~---------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~   71 (79)
                      +.+|||||+||++|||||+         .+|+++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++.. +
T Consensus       143 ~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~  222 (272)
T PRK13547        143 VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA  222 (272)
T ss_pred             cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence            5789999999999999999         59999999999999999999999999999866558999999999999865 8


Q ss_pred             cceec
Q psy5634          72 HTVID   76 (79)
Q Consensus        72 d~i~~   76 (79)
                      |+++.
T Consensus       223 d~i~~  227 (272)
T PRK13547        223 DRIAM  227 (272)
T ss_pred             CEEEE
Confidence            87653

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.91  E-value=5.2e-24  Score=139.14  Aligned_cols=74  Identities=30%  Similarity=0.536  Sum_probs=65.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH-LVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~-l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+..++.+.+. +.+..++ |.|||++||+++.+..+|+++.
T Consensus       125 ~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~~d~i~~  199 (204)
T cd03250         125 GINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NKTRILVTHQLQLLPHADQIVV  199 (204)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-CCEEEEEeCCHHHHhhCCEEEE
Confidence            468999999999999999999999999999999999999999884 5555444 8999999999998877888754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.91  E-value=4.8e-24  Score=142.38  Aligned_cols=74  Identities=32%  Similarity=0.509  Sum_probs=67.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||+||+||++|||+++.+|+++||||||+|||+.+++.+.+.+.++.++.|.|+|++||+++++.. +|+++
T Consensus       128 ~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~  202 (237)
T TIGR00968       128 PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIV  202 (237)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEE
Confidence            468999999999999999999999999999999999999999999999865447999999999998765 78864

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=4.3e-24  Score=146.47  Aligned_cols=71  Identities=31%  Similarity=0.590  Sum_probs=65.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i   74 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.++.+  +.|||++||+++++.. +|++
T Consensus       178 ~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri  249 (285)
T PRK14254        178 GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKT  249 (285)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEE
Confidence            578999999999999999999999999999999999999999999999864  3799999999999876 7875

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.91  E-value=2.4e-24  Score=140.20  Aligned_cols=72  Identities=21%  Similarity=0.278  Sum_probs=65.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      +.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.+.+.. +.|.|+|++||+.+++..+|.+
T Consensus       121 ~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~i~~~~~~  192 (195)
T PRK13541        121 CYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA-NSGGIVLLSSHLESSIKSAQIL  192 (195)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCccccchhhee
Confidence            46899999999999999999999999999999999999999999998654 4589999999999998887765

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=4.6e-24  Score=146.26  Aligned_cols=73  Identities=32%  Similarity=0.534  Sum_probs=66.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.++. . +.|||++||+++++.. +|+++.
T Consensus       180 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~~tvIivsH~~~~~~~~~d~i~~  253 (286)
T PRK14275        180 ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR-G-SYTIMIVTHNMQQASRVSDYTMF  253 (286)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999999875 3 5899999999999865 788753

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=5.5e-24  Score=144.70  Aligned_cols=73  Identities=32%  Similarity=0.522  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.+  +.|+|++||+++++.. +|+++.
T Consensus       166 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~  239 (272)
T PRK14236        166 AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAF  239 (272)
T ss_pred             cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEE
Confidence            568999999999999999999999999999999999999999999999853  5899999999999865 788653

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6e-24  Score=148.64  Aligned_cols=73  Identities=32%  Similarity=0.563  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||||++.+|+++||||||+|||+.+...+.+.|.++.+  +.|+|++||+++++.. +|+++.
T Consensus       223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driiv  296 (329)
T PRK14257        223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVF  296 (329)
T ss_pred             cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999998753  5899999999999887 898764

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6.7e-24  Score=143.82  Aligned_cols=73  Identities=33%  Similarity=0.566  Sum_probs=66.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+||+||++|||||+.+|+++||||||+|||+.++..+++.+.++. + +.|+|++||+++++.. +|+++.
T Consensus       147 ~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~  220 (261)
T PRK14263        147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAF  220 (261)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEE
Confidence            46799999999999999999999999999999999999999999999884 4 6899999999998865 788643

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.2e-23  Score=142.82  Aligned_cols=73  Identities=29%  Similarity=0.542  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+||+||++||||++.+|+++||||||+|||+.++..+.+.+.++. + +.|+|++||+++++.. +|+++.
T Consensus       161 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~  234 (267)
T PRK14237        161 ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAF  234 (267)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEE
Confidence            57899999999999999999999999999999999999999999999884 4 6899999999998865 888653

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.90  E-value=1.1e-23  Score=143.41  Aligned_cols=74  Identities=19%  Similarity=0.381  Sum_probs=67.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+||+||++||||++.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||++.++.. +|+++.
T Consensus       141 ~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~~~~i~~~~d~i~~  215 (264)
T PRK13546        141 VKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTKIAW  215 (264)
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHcCEEEE
Confidence            568999999999999999999999999999999999999999999998854 58899999999999876 787653

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1e-23  Score=141.60  Aligned_cols=73  Identities=33%  Similarity=0.522  Sum_probs=66.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||+++.+|+++||||||+|||+.+++.+.+.+.++.+  +.|+|++||+++++.. +|+++.
T Consensus       147 ~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~  220 (253)
T PRK14261        147 ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGF  220 (253)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEE
Confidence            467999999999999999999999999999999999999999999998854  5899999999999865 787653

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.2e-23  Score=143.70  Aligned_cols=73  Identities=33%  Similarity=0.495  Sum_probs=66.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||+||++|||+|+.+|+++||||||+|||+.+++.+.+.|.++.+  +.|||++||+++++.. +|+++.
T Consensus       161 ~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~  234 (276)
T PRK14271        161 PFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAAL  234 (276)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999998854  4799999999998875 787653

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.90  E-value=8.5e-24  Score=155.09  Aligned_cols=73  Identities=30%  Similarity=0.496  Sum_probs=67.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+...+.+.+.+..+  ++|+|+|||++..+..+|+++.
T Consensus       478 g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~~~~~~~D~Ii~  550 (582)
T PRK11176        478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEKADEILV  550 (582)
T ss_pred             CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHHhCCEEEE
Confidence            457999999999999999999999999999999999999999999988642  6899999999999988999764

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.90  E-value=6.7e-24  Score=160.08  Aligned_cols=75  Identities=36%  Similarity=0.548  Sum_probs=69.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceecC
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVIDN   77 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~~   77 (79)
                      ++.+||||||||++|||||+++|+++|||||||+||+.+.+.+.+.+.++..  |+|+|++||++..++.+|+++..
T Consensus       606 ~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl~ti~~adrIiVl  680 (709)
T COG2274         606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRLSTIRSADRIIVL  680 (709)
T ss_pred             CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccchHhhhccEEEEc
Confidence            3568999999999999999999999999999999999999999999998843  79999999999999999998753

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.6e-23  Score=140.33  Aligned_cols=72  Identities=26%  Similarity=0.541  Sum_probs=65.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|.++. + +.|+|++||+++++.. +|+++
T Consensus       144 ~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~  216 (250)
T PRK14266        144 ALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTS  216 (250)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEE
Confidence            56899999999999999999999999999999999999999999999884 4 6899999999999877 56553

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.90  E-value=1.1e-23  Score=153.32  Aligned_cols=73  Identities=30%  Similarity=0.476  Sum_probs=67.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+..  .++|+|++||+++.+..+|+++.
T Consensus       456 g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~  528 (529)
T TIGR02857       456 GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLALAERADRIVV  528 (529)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHHhCCEEEe
Confidence            45799999999999999999999999999999999999999999998874  37999999999999988999874

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.90  E-value=1.6e-23  Score=137.28  Aligned_cols=75  Identities=23%  Similarity=0.277  Sum_probs=63.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE-ecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT-THYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~-tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+||+||++|||||+.+|+++||||||+|||+.+++.+++.+.++.++.+.|+|++ +|+.+++.. +|+++.
T Consensus       116 ~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~  192 (202)
T cd03233         116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV  192 (202)
T ss_pred             hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence            568999999999999999999999999999999999999999999999876546665555 566666654 787653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.90  E-value=5.9e-24  Score=145.38  Aligned_cols=78  Identities=26%  Similarity=0.416  Sum_probs=72.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecCC
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDNY   78 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~~   78 (79)
                      .|.+|||||+||++|||||+.+|+++++|||+++||...+.++.+++.++.++.|.|.+++|||+..+.. +|++..-|
T Consensus       106 yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy  184 (268)
T COG4608         106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMY  184 (268)
T ss_pred             CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEe
Confidence            3789999999999999999999999999999999999999999999999988889999999999999987 78876543

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.7e-23  Score=144.62  Aligned_cols=71  Identities=30%  Similarity=0.586  Sum_probs=65.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i   74 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.++++  +.|+|++||+++++.. +|++
T Consensus       198 ~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d~i  269 (305)
T PRK14264        198 ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAARISDQT  269 (305)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcCEE
Confidence            568999999999999999999999999999999999999999999999864  4799999999999876 8875

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.90  E-value=1.4e-23  Score=154.51  Aligned_cols=73  Identities=29%  Similarity=0.461  Sum_probs=67.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+...+.+.+.+..  .++|+|++||+++.++.+|+++.
T Consensus       469 g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~~~~~~D~ii~  541 (588)
T PRK13657        469 GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLSTVRNADRILV  541 (588)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHHHHHhCCEEEE
Confidence            45799999999999999999999999999999999999999999998763  26899999999999988998764

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.90  E-value=1.2e-23  Score=153.78  Aligned_cols=72  Identities=26%  Similarity=0.459  Sum_probs=66.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      ..||||||||++||||++++|++++|||||++||+.+.+.+.+.|.+..+  ++|+|++||+......+|+++.
T Consensus       468 ~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~~~~~~~D~ii~  539 (571)
T TIGR02203       468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIEKADRIVV  539 (571)
T ss_pred             CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEEehhhHHHHhCCEEEE
Confidence            57999999999999999999999999999999999999999999988743  6899999999999888998764

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2.2e-23  Score=141.05  Aligned_cols=73  Identities=34%  Similarity=0.571  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+||+||++|||||+.+|+++||||||+|||+.++..+.+.|.++.+  +.|+|++||+++++.. +|+++.
T Consensus       159 ~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~  232 (265)
T PRK14252        159 AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAY  232 (265)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEE
Confidence            468999999999999999999999999999999999999999999998853  5899999999999865 788754

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.90  E-value=2e-23  Score=141.69  Aligned_cols=74  Identities=22%  Similarity=0.311  Sum_probs=67.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||+|||||++|||+++.+|+++||||||++||+.++..+.+.+.++.++ +.|+|++||+++++.. +|+++.
T Consensus       137 ~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~ad~i~~  211 (255)
T cd03236         137 IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHC  211 (255)
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEE
Confidence            5689999999999999999999999999999999999999999999998654 7999999999999885 888653

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.90  E-value=1.9e-23  Score=152.94  Aligned_cols=75  Identities=23%  Similarity=0.424  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+..++.+.|+|++||+++....+|+++.
T Consensus       447 G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~  521 (547)
T PRK10522        447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLE  521 (547)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEE
Confidence            358999999999999999999999999999999999999999998876654447899999999998888998764

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.90  E-value=1.1e-23  Score=137.21  Aligned_cols=71  Identities=27%  Similarity=0.239  Sum_probs=62.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      +.+||+|||||++||||++.+|++++|||||+|||+.+++.+.+.+.++.+ .|.|+|++||+...+.. +++
T Consensus       125 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~~~-~~~  195 (198)
T TIGR01189       125 AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLGLVE-ARE  195 (198)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccccccc-eEE
Confidence            568999999999999999999999999999999999999999999998854 47899999999754433 444

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.90  E-value=1.9e-23  Score=152.81  Aligned_cols=74  Identities=28%  Similarity=0.419  Sum_probs=67.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++.. .|+|+|++||+++.+..+|+++.
T Consensus       452 g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~~~~~~d~i~~  525 (544)
T TIGR01842       452 GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPSLLGCVDKILV  525 (544)
T ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHHhCCEEEE
Confidence            468999999999999999999999999999999999999999999988743 47899999999998888998764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.90  E-value=2.4e-23  Score=140.50  Aligned_cols=73  Identities=21%  Similarity=0.281  Sum_probs=66.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+||+||++|||||+.+|+++||||||+|||+..+..+++.+.++. + +.|+|++||+++.+..+|+++.
T Consensus       154 ~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~dri~~  226 (257)
T cd03288         154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVSTILDADLVLV  226 (257)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChHHHHhCCEEEE
Confidence            35899999999999999999999999999999999999999999998863 3 7899999999999887888753

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.90  E-value=2.3e-23  Score=153.35  Aligned_cols=74  Identities=16%  Similarity=0.359  Sum_probs=67.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus       141 ~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHdl~~i~~l~DrIiv  215 (549)
T PRK13545        141 VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHSLSQVKSFCTKALW  215 (549)
T ss_pred             cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999998754 48899999999999876 787653

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.90  E-value=2.1e-23  Score=153.56  Aligned_cols=73  Identities=26%  Similarity=0.420  Sum_probs=67.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+..+  ++|+|++||++.....+|+++.
T Consensus       474 g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~~l~~~D~ii~  546 (592)
T PRK10790        474 GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTIVEADTILV  546 (592)
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHHhCCEEEE
Confidence            457999999999999999999999999999999999999999999988743  6899999999999988998754

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.90  E-value=3.3e-23  Score=141.53  Aligned_cols=74  Identities=27%  Similarity=0.430  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHD---PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~---p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+|||||+||++||++|+.+   |+++||||||+|||+..+..+.+.+.++.+ .|.|+|++||+++++..+|+++.
T Consensus       167 ~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~~i~~aD~ii~  243 (261)
T cd03271         167 ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLDVIKCADWIID  243 (261)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhCCEEEE
Confidence            568999999999999999996   799999999999999999999999999864 48899999999999988888765

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.90  E-value=2.3e-23  Score=155.82  Aligned_cols=73  Identities=32%  Similarity=0.445  Sum_probs=67.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+..+  ++|+|++||+++.+..+|+++.
T Consensus       599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl~~~~~~D~iiv  671 (694)
T TIGR03375       599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLLDLVDRIIV  671 (694)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHhCCEEEE
Confidence            458999999999999999999999999999999999999999999988743  7899999999999988999764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.90  E-value=3.5e-23  Score=129.96  Aligned_cols=69  Identities=32%  Similarity=0.438  Sum_probs=62.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +||+||+||++||||++.+|+++|+||||+|||+.++..+.+.++++    +.|++++||+.+++.. +|+++.
T Consensus        70 ~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~~~d~v~~  139 (144)
T cd03221          70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVATKIIE  139 (144)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEE
Confidence            38999999999999999999999999999999999999999998865    3699999999999876 688753

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.90  E-value=2.9e-23  Score=142.26  Aligned_cols=72  Identities=26%  Similarity=0.421  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      ..||+|||||++||||++.+|+++||||||++||+.+...+.+.|.+..  .++|||++||+++++..+|+++.
T Consensus       137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~~~dri~v  208 (275)
T cd03289         137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAMLECQRFLV  208 (275)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHhCCEEEE
Confidence            4599999999999999999999999999999999999999999999763  37999999999999888898754

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.90  E-value=2.2e-23  Score=156.08  Aligned_cols=71  Identities=34%  Similarity=0.510  Sum_probs=65.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+.+++.+.+.+    .++|+|++||+++.+..+|+++.
T Consensus       613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~~D~Iiv  683 (710)
T TIGR03796       613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRDCDEIIV  683 (710)
T ss_pred             CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999998875    37899999999999999999764

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.90  E-value=2.6e-23  Score=153.54  Aligned_cols=73  Identities=26%  Similarity=0.420  Sum_probs=67.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +..||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+.+.. + +.|+|++||+++.+..+|+++.
T Consensus       469 ~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~tvI~isH~~~~~~~~d~i~~  541 (585)
T TIGR01192       469 GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-K-NRTTFIIAHRLSTVRNADLVLF  541 (585)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEEcChHHHHcCCEEEE
Confidence            45799999999999999999999999999999999999999999998763 3 7899999999999988998764

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.5e-23  Score=152.96  Aligned_cols=73  Identities=37%  Similarity=0.557  Sum_probs=68.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +..|||||+||+++|||+..+++++||||||++||.++.+.+.+.+.++++  ++|++++||++..+..+|+|+.
T Consensus       454 G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~~~~D~I~v  526 (559)
T COG4988         454 GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAADADRIVV  526 (559)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHHhcCCEEEE
Confidence            567999999999999999999999999999999999999999999999865  5899999999999999999875

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=4e-23  Score=139.74  Aligned_cols=73  Identities=29%  Similarity=0.441  Sum_probs=66.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +..||+|||||++||||++.+|+++||||||+|||+.++..+.+.|.++. + +.|+|++||+++++.. +|+++.
T Consensus       151 ~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiilvsh~~~~~~~~~d~v~~  224 (257)
T PRK14246        151 ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-EIAIVIVSHNPQQVARVADYVAF  224 (257)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CcEEEEEECCHHHHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999999884 3 5899999999999854 787653

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.89  E-value=3e-23  Score=155.01  Aligned_cols=71  Identities=27%  Similarity=0.409  Sum_probs=65.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+.+++.+.+.+.    ++|+|++||+++.+..+|+++.
T Consensus       586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~~D~Iiv  656 (686)
T TIGR03797       586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRNADRIYV  656 (686)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHcCCEEEE
Confidence            4679999999999999999999999999999999999999999988764    4799999999999999999764

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.89  E-value=1e-22  Score=128.47  Aligned_cols=70  Identities=46%  Similarity=0.705  Sum_probs=65.1

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      ||+||+||++|+|+++.+|++++|||||+|||+.++..+.+.+.++.+. +.|++++||+++++.. +|+++
T Consensus        81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~  151 (157)
T cd00267          81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVI  151 (157)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEE
Confidence            8999999999999999999999999999999999999999999988654 7899999999999987 58764

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.89  E-value=5.2e-23  Score=151.10  Aligned_cols=74  Identities=27%  Similarity=0.405  Sum_probs=65.0

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      .+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.+..+..|+|+|++||+++....+|+++.
T Consensus       469 ~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~  542 (555)
T TIGR01194       469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIK  542 (555)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE
Confidence            46999999999999999999999999999999999999999886653223347999999999998888998764

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.9e-23  Score=144.56  Aligned_cols=76  Identities=28%  Similarity=0.464  Sum_probs=72.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +|.+|||||||||+|+|||+.+|++++||||.++||..-+.+++..+.++.++.+.-|++|||.++++.+ +|+++.
T Consensus       125 ~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~  201 (352)
T COG4148         125 YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVV  201 (352)
T ss_pred             CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEE
Confidence            5889999999999999999999999999999999999999999999999998889999999999999987 888753

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.89  E-value=4.5e-23  Score=151.65  Aligned_cols=73  Identities=33%  Similarity=0.486  Sum_probs=67.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+..  .++|+|++||+++.+..+|+++.
T Consensus       449 g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~~~~~~d~i~~  521 (569)
T PRK10789        449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLSALTEASEILV  521 (569)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchhHHHcCCEEEE
Confidence            35799999999999999999999999999999999999999999998874  37899999999999888998754

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.89  E-value=4.9e-23  Score=151.72  Aligned_cols=73  Identities=38%  Similarity=0.541  Sum_probs=67.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+..  .++|+|++||+++.+..+|+++.
T Consensus       473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~~~~~d~i~~  545 (574)
T PRK11160        473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTGLEQFDRICV  545 (574)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhHHHhCCEEEE
Confidence            45799999999999999999999999999999999999999999998874  37899999999999988998764

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=4.8e-23  Score=150.40  Aligned_cols=72  Identities=28%  Similarity=0.380  Sum_probs=65.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+||||||||++|||+++.+|+++||||||+|||+.+++.+.+.+.++    +.|||++|||++++.. +|+++.
T Consensus       435 ~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~  507 (530)
T PRK15064        435 SVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDREFVSSLATRIIE  507 (530)
T ss_pred             cccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEE
Confidence            36799999999999999999999999999999999999999999988865    3499999999999876 787653

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=6.5e-23  Score=138.71  Aligned_cols=75  Identities=28%  Similarity=0.456  Sum_probs=70.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      .++||+|||+|+.|||||+.+|++|+||||.+|+.+....++.+.++++.++.|.||++|.|||+.+.. ||+++.
T Consensus       147 A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~V  222 (250)
T COG0411         147 AGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVV  222 (250)
T ss_pred             hhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEe
Confidence            358999999999999999999999999999999999999999999999977678999999999999987 888764

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=5.3e-23  Score=150.18  Aligned_cols=71  Identities=30%  Similarity=0.336  Sum_probs=64.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||++|+.+|+++||||||+|||+.++..+.+.+.+    .|.|||++||+++++.. +|+++.
T Consensus       153 ~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~d~i~~  224 (530)
T PRK15064        153 MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLNSVCTHMAD  224 (530)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhhcceEEE
Confidence            568999999999999999999999999999999999999999988753    37899999999999876 787653

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=2.8e-23  Score=138.25  Aligned_cols=75  Identities=36%  Similarity=0.521  Sum_probs=69.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      ++++||||||||+.|||||+.+|++++||||+++||.-+++.+.+.+.+++++.|+.++++||+++++.- +++++
T Consensus       129 ~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLv  204 (259)
T COG4525         129 YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLV  204 (259)
T ss_pred             ceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeE
Confidence            4679999999999999999999999999999999999999999999999999999999999999999865 66654

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.89  E-value=6.4e-23  Score=153.67  Aligned_cols=72  Identities=36%  Similarity=0.601  Sum_probs=66.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+.  + ++|+|++||+++.+..+|+++.
T Consensus       609 G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~-~~T~IiitHr~~~~~~~D~i~~  680 (708)
T TIGR01193       609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--Q-DKTIIFVAHRLSVAKQSDKIIV  680 (708)
T ss_pred             CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--c-CCEEEEEecchHHHHcCCEEEE
Confidence            4679999999999999999999999999999999999999999999874  2 6899999999999988999764

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.89  E-value=6.2e-23  Score=150.25  Aligned_cols=73  Identities=26%  Similarity=0.460  Sum_probs=67.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+.+.+++.+.+.. + ++|+|++||+++....+|+++.
T Consensus       474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~-~~t~IiitH~~~~~~~~d~vi~  546 (576)
T TIGR02204       474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-K-GRTTLIIAHRLATVLKADRIVV  546 (576)
T ss_pred             CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-C-CCEEEEEecchHHHHhCCEEEE
Confidence            35799999999999999999999999999999999999999999999874 3 7999999999999888998754

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.89  E-value=5.5e-23  Score=163.63  Aligned_cols=75  Identities=31%  Similarity=0.522  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|.+.....++|+|+|||.+..++.+|+|+.
T Consensus      1356 G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivv 1430 (1466)
T PTZ00265       1356 GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVV 1430 (1466)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEE
Confidence            467999999999999999999999999999999999999999999988742347999999999999999999764

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.89  E-value=7.2e-23  Score=153.23  Aligned_cols=73  Identities=32%  Similarity=0.485  Sum_probs=67.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++.  .++|+|++||+++.+..+|+++.
T Consensus       591 g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~ii~  663 (694)
T TIGR01846       591 GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLSTVRACDRIIV  663 (694)
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHHHHhCCEEEE
Confidence            46899999999999999999999999999999999999999999999873  37899999999999988998764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.89  E-value=1.2e-22  Score=139.66  Aligned_cols=73  Identities=30%  Similarity=0.474  Sum_probs=64.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHL-VQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l-~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+|||||++|||+|+.+|+++||||||+|||+.++..+.+.+ .++ .+ +.|||++||+++++..+|+++.
T Consensus       157 ~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~-~~-~~tIiiisH~~~~~~~~d~i~~  230 (282)
T cd03291         157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL-MA-NKTRILVTSKMEHLKKADKILI  230 (282)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHh-hC-CCEEEEEeCChHHHHhCCEEEE
Confidence            3689999999999999999999999999999999999999998765 444 33 6899999999999877888653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.89  E-value=7.2e-23  Score=151.97  Aligned_cols=73  Identities=26%  Similarity=0.366  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||+||+.+|+++||||||++||+..+..+.+.+.++. + |.|||++||+++++.. +|+++.
T Consensus       210 ~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~-~-g~tvIivsHd~~~l~~~~D~v~v  283 (590)
T PRK13409        210 ISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA-E-GKYVLVVEHDLAVLDYLADNVHI  283 (590)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            57899999999999999999999999999999999999999999999985 4 8999999999999876 787654

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.89  E-value=3.2e-23  Score=141.26  Aligned_cols=73  Identities=29%  Similarity=0.590  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||.|++||+.+..+++++|+++|||||||||||.+.+.+.+.+.++. +.|.|||++||.|+.++. ||+++
T Consensus       128 Ik~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk-~~GatIifSsH~Me~vEeLCD~ll  201 (300)
T COG4152         128 IKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK-EEGATIIFSSHRMEHVEELCDRLL  201 (300)
T ss_pred             HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHH-hcCCEEEEecchHHHHHHHhhhhh
Confidence            56899999999999999999999999999999999999999999999985 569999999999999987 88764

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.89  E-value=7e-23  Score=163.01  Aligned_cols=75  Identities=29%  Similarity=0.467  Sum_probs=69.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|++|||||||++||+.+...+.+.|.++.++.|+|+|++||++..+..+|+++.
T Consensus       577 g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iiv  651 (1466)
T PTZ00265        577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFV  651 (1466)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999998865458999999999999988998764

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.89  E-value=1.5e-22  Score=136.12  Aligned_cols=74  Identities=30%  Similarity=0.513  Sum_probs=69.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      .++|||||||.++|||||+.+|++++||||+.||-|...+++++.+++++++.|.||++|.+|...+.. +|+.+
T Consensus       134 aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~y  208 (237)
T COG0410         134 AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGY  208 (237)
T ss_pred             ccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEE
Confidence            478999999999999999999999999999999999999999999999987778999999999999876 78754

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.89  E-value=4.8e-23  Score=148.00  Aligned_cols=76  Identities=32%  Similarity=0.483  Sum_probs=72.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      .|.+|||||||||.||.||+++|+++|.||||++||...+.+++++|+++.++.|.+++++|||+..+.. +|++..
T Consensus       154 yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~V  230 (534)
T COG4172         154 YPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYV  230 (534)
T ss_pred             CCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEE
Confidence            3789999999999999999999999999999999999999999999999988889999999999999987 888764

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=7.6e-23  Score=152.66  Aligned_cols=71  Identities=25%  Similarity=0.426  Sum_probs=65.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+||++|+.+|+++||||||+|||+.++..+.+.|.++   .| |||+||||+.++.. +|+++.
T Consensus       428 ~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~~~~~~~~d~i~~  499 (638)
T PRK10636        428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDRHLLRSTTDDLYL  499 (638)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999876   24 99999999999876 787653

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.89  E-value=8.6e-23  Score=149.81  Aligned_cols=73  Identities=30%  Similarity=0.509  Sum_probs=67.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +..||||||||++||||++++|++++|||||+++|+.+...+.+.+.+.. + ++|+++++|.+..+..+|+++.
T Consensus       463 G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~-~rT~iiIaHRlsti~~aD~IiV  535 (567)
T COG1132         463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-K-GRTTLIIAHRLSTIKNADRIIV  535 (567)
T ss_pred             CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-c-CCEEEEEeccHhHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999999775 3 5799999999999999999764

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.88  E-value=9.1e-23  Score=149.74  Aligned_cols=71  Identities=23%  Similarity=0.307  Sum_probs=64.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||+|+.+|+++||||||+|||+.+++.+.+.|.++  . + |||++|||++++.. +|+++.
T Consensus       441 ~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~-~-~viivsHd~~~~~~~~d~i~~  512 (552)
T TIGR03719       441 VGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF--A-G-CAVVISHDRWFLDRIATHILA  512 (552)
T ss_pred             hhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--C-C-eEEEEeCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999876  2 4 89999999999876 788653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.88  E-value=1.5e-22  Score=132.89  Aligned_cols=73  Identities=18%  Similarity=0.220  Sum_probs=65.6

Q ss_pred             CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+|||||++||++++    .+|++++|||||+|||+.....+.+.+.++.+  +.|||++||+++++..+|+++.
T Consensus       111 ~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~~~~~~~d~v~~  187 (197)
T cd03278         111 LSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQFIVITHRKGTMEAADRLYG  187 (197)
T ss_pred             hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHhhcceEEE
Confidence            5789999999999999997    46799999999999999999999999998743  5899999999998877888764

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.88  E-value=7.7e-23  Score=133.52  Aligned_cols=73  Identities=38%  Similarity=0.628  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      |-.|||||+|||+|||||+.+|+++++||||++|||.-..++.++++++. +.|.|-+++||..+.++. +.+++
T Consensus       139 plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~-~tgitqvivthev~va~k~as~vv  212 (242)
T COG4161         139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA-ETGITQVIVTHEVEVARKTASRVV  212 (242)
T ss_pred             ceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHH-hcCceEEEEEeehhHHHhhhhheE
Confidence            45799999999999999999999999999999999999999999999985 569999999999999876 55553

>KOG0055|consensus

Probab=99.88  E-value=7.3e-23  Score=159.60  Aligned_cols=73  Identities=27%  Similarity=0.485  Sum_probs=67.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      ..+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|.+..  .|+|.|+|+|++..++.+|+++.
T Consensus       487 g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLStIrnaD~I~v  559 (1228)
T KOG0055|consen  487 GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLSTIRNADKIAV  559 (1228)
T ss_pred             CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehhhhhccCEEEE
Confidence            45799999999999999999999999999999999999999999998764  38899999999999999998764

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.88  E-value=7.4e-23  Score=147.02  Aligned_cols=76  Identities=29%  Similarity=0.494  Sum_probs=71.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      .|.++|||||||++||||++.+|++++||||||+||...+.++.++|+++.++.|.+.+|+|||+..++. ||+++.
T Consensus       423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viV  499 (534)
T COG4172         423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIV  499 (534)
T ss_pred             CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEE
Confidence            3789999999999999999999999999999999999999999999999988889999999999999986 787764

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.88  E-value=1e-22  Score=149.67  Aligned_cols=71  Identities=28%  Similarity=0.364  Sum_probs=64.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||+|+.+|+++||||||++||+.++..+.+.|.++    +.|||++||+++++.. +|+++.
T Consensus       161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~~~~~~~~d~i~~  232 (556)
T PRK11819        161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDRYFLDNVAGWILE  232 (556)
T ss_pred             hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEE
Confidence            5689999999999999999999999999999999999999999988875    2499999999999876 777653

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.2e-22  Score=151.66  Aligned_cols=71  Identities=27%  Similarity=0.302  Sum_probs=64.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+||++|+.+|++|||||||++||+.+...+.+.|.++    +.|||+||||+.++.. +|+++.
T Consensus       147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~  218 (638)
T PRK10636        147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIH  218 (638)
T ss_pred             hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEE
Confidence            5689999999999999999999999999999999999999998888764    4699999999999876 787654

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.88  E-value=1.3e-22  Score=151.16  Aligned_cols=71  Identities=28%  Similarity=0.393  Sum_probs=64.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||+|+.+|+++||||||++||+.++..+.+.|.++    +.|||+||||..++.. +|+++.
T Consensus       154 ~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~i~~  225 (635)
T PRK11147        154 LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATRIVD  225 (635)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCeEEE
Confidence            5789999999999999999999999999999999999999999998876    2499999999999876 787754

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.88  E-value=1.9e-22  Score=133.36  Aligned_cols=73  Identities=18%  Similarity=0.123  Sum_probs=64.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.||+|||||++||||++.+|+++|||||++++|+.++..+.+.+.+..+  +.|+|++||++.++.. +|+++.
T Consensus       102 ~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~vsH~~~~~~~~~d~i~~  175 (213)
T PRK15177        102 VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGLIVLTHNPRLIKEHCHAFGV  175 (213)
T ss_pred             HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEEEECCHHHHHHhcCeeEE
Confidence            568999999999999999999999999999999999999999998866544  3579999999999875 787653

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.88  E-value=2e-22  Score=148.18  Aligned_cols=71  Identities=21%  Similarity=0.298  Sum_probs=64.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.++  . | |||++|||++++.. +|+++.
T Consensus       443 ~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~-~-tvi~vtHd~~~~~~~~d~i~~  514 (556)
T PRK11819        443 VGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF--P-G-CAVVISHDRWFLDRIATHILA  514 (556)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--C-C-eEEEEECCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999876  2 4 89999999999876 788653

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.88  E-value=1.9e-22  Score=163.90  Aligned_cols=73  Identities=37%  Similarity=0.722  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +++||||||||+++|+||+.+|++++|||||+||||.+++.+++.+.++.++ |+|||++||++++++. ||+++
T Consensus      2068 ~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~ 2141 (2272)
T TIGR01257      2068 AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLA 2141 (2272)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEE
Confidence            5789999999999999999999999999999999999999999999998654 8999999999999986 88864

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.88  E-value=2e-22  Score=151.54  Aligned_cols=71  Identities=28%  Similarity=0.455  Sum_probs=62.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+.+.+.+ ..   ...++|+|++||+++.+..+|+++.
T Consensus       615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl~~i~~aD~Iiv  685 (711)
T TIGR00958       615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR---SRASRTVLLIAHRLSTVERADQILV  685 (711)
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh---ccCCCeEEEEeccHHHHHhCCEEEE
Confidence            45799999999999999999999999999999999999888887 22   2247899999999999988999764

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.88  E-value=1.9e-22  Score=148.03  Aligned_cols=71  Identities=30%  Similarity=0.396  Sum_probs=64.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||+|+.+|+++||||||++||+.++..+.+.|.++    +.|||++||+++++.. +|+++.
T Consensus       159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~d~v~~  230 (552)
T TIGR03719       159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVAGWILE  230 (552)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEE
Confidence            5689999999999999999999999999999999999999999988765    2499999999999876 787653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.88  E-value=2.3e-22  Score=133.88  Aligned_cols=73  Identities=34%  Similarity=0.554  Sum_probs=66.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      ..+||||||+|+.|||||+.+|++++|||||+|+||.+...+.+++..+. +.|..|+++-||..+... +||.+
T Consensus       137 a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~-~rgiGvLITDHNVREtL~i~dRaY  210 (243)
T COG1137         137 AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK-DRGIGVLITDHNVRETLDICDRAY  210 (243)
T ss_pred             ccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHH-hCCceEEEccccHHHHHhhhheEE
Confidence            35899999999999999999999999999999999999999999999885 459999999999988765 88764

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.8e-22  Score=147.89  Aligned_cols=73  Identities=33%  Similarity=0.586  Sum_probs=68.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +..|||||+||++|||+|+++.+++||||||.|||+.+.+++++.+.+.++  |+|+|++||++..++.+|+|+.
T Consensus       472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~~drIiv  544 (573)
T COG4987         472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLERMDRIIV  544 (573)
T ss_pred             CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHhhcCEEEE
Confidence            468999999999999999999999999999999999999999999998754  7999999999999999999654

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.87  E-value=2.3e-22  Score=146.32  Aligned_cols=62  Identities=32%  Similarity=0.532  Sum_probs=57.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      +.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+..  .++|+|++||++
T Consensus       468 G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl  529 (529)
T TIGR02868       468 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL  529 (529)
T ss_pred             cCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence            45799999999999999999999999999999999999999999998763  378999999974

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.87  E-value=3.1e-22  Score=149.11  Aligned_cols=71  Identities=24%  Similarity=0.271  Sum_probs=63.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||++|+.+|++|||||||+|||+.+++.+.+.+.++    +.|||+||||..++.. +|+++.
T Consensus       438 ~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~  509 (635)
T PRK11147        438 VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWI  509 (635)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEE
Confidence            5789999999999999999999999999999999999999999888765    3499999999999876 777653

>PLN03211 ABC transporter G-25; Provisional

Probab=99.87  E-value=3e-22  Score=150.11  Aligned_cols=74  Identities=30%  Similarity=0.448  Sum_probs=66.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH-HH-Hhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE-EA-RQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~-~~-~~~d~i~~   76 (79)
                      +++||||||||++||++|+.+|++++|||||+|||+.++..+.+.++++++ .|+|||++||++. .+ ..+|+++.
T Consensus       204 ~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iil  279 (659)
T PLN03211        204 IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLV  279 (659)
T ss_pred             CCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEE
Confidence            457999999999999999999999999999999999999999999999875 4899999999987 34 44788753

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.87  E-value=3.8e-22  Score=149.36  Aligned_cols=70  Identities=20%  Similarity=0.236  Sum_probs=64.4

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      .+||||||||++||||++++|+++||||||++||+...+.+.+.+.+    .|.|+|++||+++.+..+|+++.
T Consensus       581 ~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~~~~d~il~  650 (659)
T TIGR00954       581 DVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLWKYHEYLLY  650 (659)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHHHhCCEEEE
Confidence            68999999999999999999999999999999999999999887764    27899999999999888998764

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.87  E-value=3.6e-22  Score=162.38  Aligned_cols=73  Identities=38%  Similarity=0.710  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||+||+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++.. +|+++.
T Consensus      1059 ~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~~-g~TIIltTHdmdea~~laDrI~i 1132 (2272)
T TIGR01257      1059 AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RS-GRTIIMSTHHMDEADLLGDRIAI 1132 (2272)
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-hC-CCEEEEEECCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999998 44 8999999999999976 888653

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.87  E-value=6e-22  Score=130.53  Aligned_cols=75  Identities=23%  Similarity=0.250  Sum_probs=67.5

Q ss_pred             CCCCCHHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634           2 EISSRGGQQRR------VSFAVALMHDPELLILDEPTVGVDPLLRQ-SIWNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqr------v~laral~~~p~~lllDEP~~glD~~~~~-~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      +.+||+||+||      ++++++++.+|+++++||||++||+..+. .+.+.+.++.++.|.|+|++||+++.+..+|++
T Consensus       113 ~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i  192 (204)
T cd03240         113 RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHI  192 (204)
T ss_pred             ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEE
Confidence            57899999996      78999999999999999999999999999 999999988655478999999999988778887


Q ss_pred             ec
Q psy5634          75 ID   76 (79)
Q Consensus        75 ~~   76 (79)
                      +.
T Consensus       193 ~~  194 (204)
T cd03240         193 YR  194 (204)
T ss_pred             EE
Confidence            63

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.87  E-value=5e-22  Score=130.48  Aligned_cols=74  Identities=23%  Similarity=0.244  Sum_probs=66.2

Q ss_pred             CCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEecCHHHHHhhcce
Q psy5634           1 MEISSRGGQQRRVSFAVAL----MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD--GNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral----~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~--~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      ++++||+|||||++||+++    +.+|+++||||||+|+|+..+..+.+.|.+..++  .+.||+++||+++.+...|+|
T Consensus       106 ~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v  185 (198)
T cd03276         106 DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDV  185 (198)
T ss_pred             cccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccce
Confidence            3678999999999999999    5899999999999999999999999999987654  346899999999999887775

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.87  E-value=1.4e-21  Score=129.05  Aligned_cols=73  Identities=23%  Similarity=0.250  Sum_probs=64.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-
Q psy5634           2 EISSRGGQQRRVSFAVALMH----------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-   70 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~----------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-   70 (79)
                      +.+||+||+||+++|||++.          +|+++|+||||++||+..+..+.+.+.++.++ +.|+|++||+++++.. 
T Consensus       121 ~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~tii~itH~~~~~~~~  199 (213)
T cd03279         121 VSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE-NRMVGVISHVEELKERI  199 (213)
T ss_pred             ccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEECchHHHHhh
Confidence            56899999999999999985          57899999999999999999999999988544 8899999999998877 


Q ss_pred             hccee
Q psy5634          71 AHTVI   75 (79)
Q Consensus        71 ~d~i~   75 (79)
                      +++++
T Consensus       200 ~~~i~  204 (213)
T cd03279         200 PQRLE  204 (213)
T ss_pred             CcEEE
Confidence            45543

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PLN03073 ABC transporter F family; Provisional

Probab=99.87  E-value=8.4e-22  Score=148.93  Aligned_cols=71  Identities=25%  Similarity=0.356  Sum_probs=63.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||+++.+|+++||||||+|||+.+++.+.+.+.++   .| |||++|||+.++.. +|+++.
T Consensus       625 ~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~~~i~~~~drv~~  696 (718)
T PLN03073        625 MYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDEHLISGSVDELWV  696 (718)
T ss_pred             ccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCHHHHHHhCCEEEE
Confidence            6789999999999999999999999999999999999999988877654   24 99999999999976 787653

>KOG0058|consensus

Probab=99.86  E-value=5.2e-22  Score=148.76  Aligned_cols=73  Identities=29%  Similarity=0.495  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||+||||||++||.++||||.||+||..+...+.+.+.+..+  ++|||++.|.+..++.+|+|+.
T Consensus       602 G~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~~Ad~Ivv  674 (716)
T KOG0058|consen  602 GSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRHADQIVV  674 (716)
T ss_pred             cccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHhhhccEEEE
Confidence            468999999999999999999999999999999999999999999988754  5899999999999999998753

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.86  E-value=1.8e-21  Score=130.97  Aligned_cols=72  Identities=19%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           2 EISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      +.+||+|||||+++|++++    .+|+++++||||++||+..++.+.+.+.++. + |.|+|++||+.+....+|+++
T Consensus       164 ~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~~~~~~~~d~v~  239 (251)
T cd03273         164 LTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLKEGMFNNANVLF  239 (251)
T ss_pred             ccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECCHHHHHhCCEEE
Confidence            5789999999999999998    5789999999999999999999999999874 3 789999999987777789875

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PLN03073 ABC transporter F family; Provisional

Probab=99.86  E-value=1.1e-21  Score=148.26  Aligned_cols=71  Identities=30%  Similarity=0.389  Sum_probs=64.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++||++|+.+|+++||||||++||+.++..+.+.|.++    +.|+|++||+.+++.. +|+++.
T Consensus       342 ~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd~~~l~~~~d~i~~  413 (718)
T PLN03073        342 TKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHAREFLNTVVTDILH  413 (718)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEE
Confidence            5689999999999999999999999999999999999999999988765    5799999999999876 787653

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.86  E-value=1.6e-21  Score=145.66  Aligned_cols=74  Identities=39%  Similarity=0.481  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.+ .|.|+|++||+++.+..+|+++.
T Consensus       142 ~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~~~~~~d~i~~  215 (648)
T PRK10535        142 PSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQVAAQAERVIE  215 (648)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999998864 48999999999998877888753

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.86  E-value=1.4e-21  Score=131.50  Aligned_cols=73  Identities=15%  Similarity=0.175  Sum_probs=66.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           3 ISSRGGQQRRVSFAVALMHD----PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~----p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      .+||+|||||++||++++.+    |+++||||||+|||+..+..+.+.+.+++++ |.++|++||+.+....+|+++.
T Consensus       154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~~~~~~d~i~~  230 (247)
T cd03275         154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEEFFSKADALVG  230 (247)
T ss_pred             HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHHHHhhCCeEEE
Confidence            68999999999999999864    8999999999999999999999999998644 8899999999888877998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.86  E-value=3e-21  Score=128.62  Aligned_cols=73  Identities=21%  Similarity=0.256  Sum_probs=63.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||+++.    +|+++|+||||+|||+..++.+++.+.++.+  +.++|++||..+....+|+++.
T Consensus       156 ~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~~~~~~d~i~~  232 (243)
T cd03272         156 MQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPELLEVADKFYG  232 (243)
T ss_pred             ccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHhhCCEEEE
Confidence            46899999999999999973    5899999999999999999999999998743  6889999999776666888753

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PLN03232 ABC transporter C family member; Provisional

Probab=99.86  E-value=1.6e-21  Score=155.49  Aligned_cols=73  Identities=22%  Similarity=0.276  Sum_probs=67.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+++..  .++|+|+|+|+++.+..+|+|+.
T Consensus      1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~~DrIlV 1441 (1495)
T PLN03232       1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNTIIDCDKILV 1441 (1495)
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHhCCEEEE
Confidence            45899999999999999999999999999999999999999999998764  37999999999999999999864

>KOG0055|consensus

Probab=99.85  E-value=1.6e-21  Score=152.27  Aligned_cols=74  Identities=24%  Similarity=0.446  Sum_probs=67.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      ++.+||||||||+|||||+++||++|||||.||+||.++.+.+.+.|.+..  .|+|+|++.|.+..+..+|.|..
T Consensus      1123 rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLSTIqnaD~I~V 1196 (1228)
T KOG0055|consen 1123 RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLSTIQNADVIAV 1196 (1228)
T ss_pred             ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchhhhhcCCEEEE
Confidence            356899999999999999999999999999999999999999999998763  38999999999999999998753

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.85  E-value=4.1e-21  Score=148.12  Aligned_cols=74  Identities=30%  Similarity=0.430  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+|||||+||+.||++|+.+|  +++||||||+|||+.....+.+.|.++.+ .|.|||+|+|+++++..+|+++.
T Consensus       485 ~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~~~i~~aD~vi~  560 (924)
T TIGR00630       485 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDEETIRAADYVID  560 (924)
T ss_pred             cCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHhhCCEEEE
Confidence            5789999999999999999986  89999999999999999999999999865 48999999999999888898764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PLN03130 ABC transporter C family member; Provisional

Probab=99.85  E-value=3.4e-21  Score=154.45  Aligned_cols=73  Identities=23%  Similarity=0.280  Sum_probs=67.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||+++|..+.+.+.+.+++..  .++|+|+++|.++.+..+|+|+.
T Consensus      1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~tI~~~DrIlV 1444 (1622)
T PLN03130       1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILV 1444 (1622)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHHHHhCCEEEE
Confidence            45899999999999999999999999999999999999999999999874  37999999999999999999864

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.85  E-value=4.9e-21  Score=139.90  Aligned_cols=74  Identities=23%  Similarity=0.306  Sum_probs=69.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||.||||.|+||||+..+++++||||||+.|+....+.++++++++. +.|.++||+||.++++.. ||++..
T Consensus       143 v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk-~~Gv~ii~ISHrl~Ei~~i~DritV  217 (500)
T COG1129         143 VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQGVAIIYISHRLDEVFEIADRITV  217 (500)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEcCcHHHHHHhcCEEEE
Confidence            67899999999999999999999999999999999999999999999985 569999999999999987 888754

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.85  E-value=4.3e-21  Score=148.24  Aligned_cols=74  Identities=23%  Similarity=0.396  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+|||||+||+.||++|+.+|  +++||||||+|||+.....+++.|.++.+ .|.|||+|+|+++++..+|+++.
T Consensus       487 ~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~~~i~~aD~vi~  562 (943)
T PRK00349        487 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDEDTIRAADYIVD  562 (943)
T ss_pred             hhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhCCEEEE
Confidence            5689999999999999999997  99999999999999999999999999854 58999999999999888898764

>KOG0057|consensus

Probab=99.85  E-value=2.7e-21  Score=141.93  Aligned_cols=74  Identities=27%  Similarity=0.475  Sum_probs=68.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      ++..|||||||||+++||++.+|+++++||||++||..+.+++++.+.+.  ..++|+|++-|++..+..+|+|+.
T Consensus       484 rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l~ll~~~DkI~~  557 (591)
T KOG0057|consen  484 RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRLDLLKDFDKIIV  557 (591)
T ss_pred             cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecchhHhcCCEEEE
Confidence            35679999999999999999999999999999999999999999999984  348999999999999999999864

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.85  E-value=4.4e-21  Score=153.12  Aligned_cols=73  Identities=26%  Similarity=0.268  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||+++|+.+...+.+.+++..  .++|+|+|+|+++.+..+|+|+.
T Consensus      1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~~DrIlV 1491 (1522)
T TIGR00957      1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMDYTRVIV 1491 (1522)
T ss_pred             CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEE
Confidence            46899999999999999999999999999999999999999999998764  37899999999999999999864

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.85  E-value=5e-21  Score=142.36  Aligned_cols=72  Identities=35%  Similarity=0.560  Sum_probs=65.3

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH-HH-Hhhccee
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE-EA-RQAHTVI   75 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~-~~-~~~d~i~   75 (79)
                      +.||||||||++||++|+.+|++++|||||+|||+.+...+++.+++++++ |.|+|+++|++. .+ ..+|+++
T Consensus       165 ~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~  238 (617)
T TIGR00955       165 KGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKII  238 (617)
T ss_pred             CCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEE
Confidence            479999999999999999999999999999999999999999999998754 899999999984 44 5588865

>PLN03232 ABC transporter C family member; Provisional

Probab=99.84  E-value=5.5e-21  Score=152.42  Aligned_cols=73  Identities=22%  Similarity=0.398  Sum_probs=64.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH-LVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~-l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||+.++|+++||||||++||+.+.+.+++. +....  .++|+|++||++..+..+|+++.
T Consensus       738 G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l~~aD~Ii~  811 (1495)
T PLN03232        738 GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFLPLMDRIIL  811 (1495)
T ss_pred             CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChhhHHhCCEEEE
Confidence            457999999999999999999999999999999999999988765 44332  37899999999999888998764

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.84  E-value=3.8e-21  Score=141.60  Aligned_cols=70  Identities=34%  Similarity=0.420  Sum_probs=62.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||||||.||+||++|..+|++|||||||++||..+..-+-+.|.++   .| |+|+||||..+... |.+|+
T Consensus       151 ~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I~  221 (530)
T COG0488         151 VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDNVATHIL  221 (530)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHHHhhheE
Confidence            4689999999999999999999999999999999999999888887754   36 99999999999987 44443

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.84  E-value=6.2e-21  Score=124.72  Aligned_cols=77  Identities=27%  Similarity=0.389  Sum_probs=70.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH-HhhcceecC
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA-RQAHTVIDN   77 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~-~~~d~i~~~   77 (79)
                      ++.+||||||||++|+|-|...|++++|||||++||+.+++.+-+++.++.++...+++.+|||.+.+ ..+|+++.-
T Consensus       130 ~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl  207 (223)
T COG4619         130 NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITL  207 (223)
T ss_pred             hhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEe
Confidence            35689999999999999999999999999999999999999999999999887889999999999985 458887754

>PLN03140 ABC transporter G family member; Provisional

Probab=99.84  E-value=7.2e-21  Score=151.69  Aligned_cols=73  Identities=22%  Similarity=0.362  Sum_probs=65.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH-H-Hhhcceec
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE-A-RQAHTVID   76 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~-~-~~~d~i~~   76 (79)
                      +.||||||||++||++|+.+|++++|||||+|||+.++..+++.+++++++ |.|||+++|+++. + ..+|+++.
T Consensus      1018 ~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vll 1092 (1470)
T PLN03140       1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLL 1092 (1470)
T ss_pred             CCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEE
Confidence            589999999999999999999999999999999999999999999998754 8999999999973 3 45787653

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.84  E-value=5.5e-21  Score=151.79  Aligned_cols=75  Identities=21%  Similarity=0.208  Sum_probs=67.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH-HHHH-hhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI-EEAR-QAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~-~~~~-~~d~i~~   76 (79)
                      ++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.|+|+++|++ +.+. .+|+++.
T Consensus       207 ~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~  283 (1394)
T TIGR00956       207 VRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIV  283 (1394)
T ss_pred             CCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE
Confidence            4679999999999999999999999999999999999999999999999766689999999996 4554 4888754

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.84  E-value=9.1e-21  Score=151.17  Aligned_cols=73  Identities=32%  Similarity=0.533  Sum_probs=65.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH-LVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~-l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++.+|+++||||||++||+...+.+++. +..+. + |+|+|++||+++.+..+|+++.
T Consensus       546 g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~-~~tvilvtH~~~~~~~ad~ii~  619 (1490)
T TIGR01271       546 GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-S-NKTRILVTSKLEHLKKADKILL  619 (1490)
T ss_pred             CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCeEEEEeCChHHHHhCCEEEE
Confidence            468999999999999999999999999999999999999999974 55553 3 7999999999999888998764

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.84  E-value=1.2e-20  Score=150.46  Aligned_cols=73  Identities=26%  Similarity=0.413  Sum_probs=67.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||+++|+.+...+.+.|++..  .++|||+++|.++.+..+|+|+.
T Consensus      1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~~DrIlv 1423 (1490)
T TIGR01271      1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLECQQFLV 1423 (1490)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEE
Confidence            35799999999999999999999999999999999999999999998864  36999999999999999999764

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PTZ00243 ABC transporter; Provisional

Probab=99.84  E-value=1.2e-20  Score=151.07  Aligned_cols=73  Identities=25%  Similarity=0.360  Sum_probs=67.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHD-PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~-p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++ |++|||||||++||+.+.+.+.+.|.+..+  ++|+|+|+|+++.+..+|+|+.
T Consensus      1443 G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~--~~TvI~IAHRl~ti~~~DrIlV 1516 (1560)
T PTZ00243       1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS--AYTVITIAHRLHTVAQYDKIIV 1516 (1560)
T ss_pred             cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC--CCEEEEEeccHHHHHhCCEEEE
Confidence            468999999999999999995 899999999999999999999999987643  6899999999999999999864

>PLN03130 ABC transporter C family member; Provisional

Probab=99.83  E-value=1.5e-20  Score=150.78  Aligned_cols=73  Identities=23%  Similarity=0.414  Sum_probs=64.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWN-HLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~-~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||+.++|+++||||||++||+...+.+++ .+....  .++|+|++||++..+..+|+++.
T Consensus       738 G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~~aD~Ii~  811 (1622)
T PLN03130        738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFLSQVDRIIL  811 (1622)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHHHhCCEEEE
Confidence            45799999999999999999999999999999999999888765 455443  37999999999999989998764

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.83  E-value=1.3e-20  Score=150.50  Aligned_cols=75  Identities=31%  Similarity=0.469  Sum_probs=66.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQIT-KDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~-~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||+..+|+++||||||++||+...+.+++.+.+.. ...++|+|++||+++.+..+|+++.
T Consensus       758 g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~  833 (1522)
T TIGR00957       758 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIV  833 (1522)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEE
Confidence            56899999999999999999999999999999999999999999886531 1237899999999999988998764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.83  E-value=1.1e-20  Score=138.02  Aligned_cols=74  Identities=27%  Similarity=0.458  Sum_probs=69.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||.||||.|||.|+.+|++|||||||.|+|..++.++++++.+++++ |.+||++|.+++++.. ||||+.
T Consensus       399 v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlV  473 (500)
T COG1129         399 IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILV  473 (500)
T ss_pred             hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEE
Confidence            5789999999999999999999999999999999999999999999999865 9999999999999875 999864

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.83  E-value=1.9e-20  Score=127.03  Aligned_cols=68  Identities=43%  Similarity=0.630  Sum_probs=62.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecCHHHHHh
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-GNKTVIITTHYIEEARQ   70 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~-~g~tvi~~tH~~~~~~~   70 (79)
                      .+||-|||||+.|||||+.+|+++||||||+|||...++.+.+.|.+++.. .+.++|+|||+.+++-.
T Consensus       170 ~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~  238 (257)
T COG1119         170 GSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPP  238 (257)
T ss_pred             hhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhccc
Confidence            579999999999999999999999999999999999999999999998643 47899999999998865

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.83  E-value=3.4e-20  Score=143.29  Aligned_cols=74  Identities=28%  Similarity=0.439  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDP---ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p---~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+|||||+||+.||++|+.+|   +++||||||+|||+..+..+++.|.++.+ .|.|||++||+++++..+|+++.
T Consensus       828 ~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIiitH~~~~i~~aD~ii~  904 (943)
T PRK00349        828 ATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVIEHNLDVIKTADWIID  904 (943)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEE
Confidence            5689999999999999999999   99999999999999999999999999864 48999999999999988888765

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.83  E-value=1.9e-20  Score=129.16  Aligned_cols=75  Identities=33%  Similarity=0.509  Sum_probs=70.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +++.||-|||.|+.||.+|+++|++++|||||-|||...+..+.+.+++++++.+.||+++||+++.+.. |++++
T Consensus       153 ~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~  228 (325)
T COG4586         153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVL  228 (325)
T ss_pred             hhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheE
Confidence            3578999999999999999999999999999999999999999999999998889999999999998876 88764

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.83  E-value=3.8e-20  Score=122.70  Aligned_cols=73  Identities=18%  Similarity=0.169  Sum_probs=64.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +..||+|||||++||+|++.    +|+++++||||+|||+.++..+.+.+.++. + +.|+|++||+.+....+|+++.
T Consensus       125 ~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~-~~~~iivs~~~~~~~~~d~v~~  201 (212)
T cd03274         125 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-K-NAQFIVISLRNNMFELADRLVG  201 (212)
T ss_pred             hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECcHHHHHhCCEEEE
Confidence            46899999999999999974    579999999999999999999999999874 3 5789999999776667998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.83  E-value=7.9e-21  Score=126.60  Aligned_cols=73  Identities=26%  Similarity=0.389  Sum_probs=69.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      .+||||||||..+|..++++.++++||||.++||.+-.-.+++.+++++++.|+||++|-||++++.. +|.++
T Consensus       134 d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IV  207 (252)
T COG4604         134 DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIV  207 (252)
T ss_pred             HhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhhee
Confidence            47999999999999999999999999999999999999999999999999999999999999999986 67765

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.83  E-value=2.4e-20  Score=148.18  Aligned_cols=71  Identities=25%  Similarity=0.423  Sum_probs=64.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH--Hhhccee
Q psy5634           4 SSRGGQQRRVSFAVALMHDPE-LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA--RQAHTVI   75 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~-~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~--~~~d~i~   75 (79)
                      +||||||||++||++|+.+|+ +++|||||+|||+.++..+++.|+++++ .|.|||+++|+++..  ..+|+++
T Consensus       901 ~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl  974 (1394)
T TIGR00956       901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLL  974 (1394)
T ss_pred             CCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEE
Confidence            799999999999999999997 9999999999999999999999999865 489999999999853  4578765

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.83  E-value=7.3e-20  Score=118.70  Aligned_cols=72  Identities=21%  Similarity=0.329  Sum_probs=65.3

Q ss_pred             CCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           4 SSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         4 ~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      -||+||+||+++||+++    .+|+++++|||++++|+.....+.+.+.++.+. |.++|++||+.+.+..+|+++.
T Consensus        94 ~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~~~~~adrvi~  169 (178)
T cd03239          94 ILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKEMFENADKLIG  169 (178)
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHhhCCeEEE
Confidence            38999999999999996    689999999999999999999999999988654 7899999999998888888754

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>PTZ00243 ABC transporter; Provisional

Probab=99.83  E-value=3.4e-20  Score=148.40  Aligned_cols=74  Identities=24%  Similarity=0.392  Sum_probs=64.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||++.+|+++||||||++||+...+.+++.+..... .|+|+|++||+++.+..+|+++.
T Consensus       780 g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~~~~ad~ii~  853 (1560)
T PTZ00243        780 GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVLATHQVHVVPRADYVVA  853 (1560)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999998888765432222 37999999999999988898754

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.82  E-value=5.9e-20  Score=121.16  Aligned_cols=74  Identities=30%  Similarity=0.475  Sum_probs=69.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      |.++||||+||+.|||-|+..|+++++||||.|||...+..++++++.+.++.|.+++++|||+..+.- +++..
T Consensus       149 PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlm  223 (258)
T COG4107         149 PRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLM  223 (258)
T ss_pred             ccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcce
Confidence            678999999999999999999999999999999999999999999999999999999999999998865 66643

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.82  E-value=6e-20  Score=133.44  Aligned_cols=72  Identities=33%  Similarity=0.455  Sum_probs=67.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i   74 (79)
                      +.+||-|+||||.|.++|.++|++|||||||+-|.|...+++++.++++.+ .|+|||++||.++++.. +|++
T Consensus       138 V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL~Ev~~iaDrv  210 (501)
T COG3845         138 VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKLKEVMAIADRV  210 (501)
T ss_pred             eecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhhCee
Confidence            578999999999999999999999999999999999999999999999865 59999999999999987 8875

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.82  E-value=9.1e-20  Score=140.71  Aligned_cols=74  Identities=27%  Similarity=0.438  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMH---DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~---~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+|||||+||++||++|+.   +|+++||||||+|||+..+..+.+.|.++.+ .|.|||++||+++++..+|+++.
T Consensus       826 ~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVIvi~H~~~~i~~aD~ii~  902 (924)
T TIGR00630       826 ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVVVIEHNLDVIKTADYIID  902 (924)
T ss_pred             cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhCCEEEE
Confidence            46899999999999999997   5999999999999999999999999999864 48999999999999988898765

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.81  E-value=7.8e-20  Score=147.07  Aligned_cols=74  Identities=27%  Similarity=0.415  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+|||||+||+.||++|+.+|  +++||||||+|||+..++.+.+.|+++.++ |.|||+|||+++....+|+++.
T Consensus       474 ~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~-G~TVIvVeHd~~vi~~aDrVi~  549 (1809)
T PRK00635        474 LATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQ-GNTVLLVEHDEQMISLADRIID  549 (1809)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCcHHHHHhCCEEEE
Confidence            4689999999999999999999  899999999999999999999999998654 8999999999997766898764

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.81  E-value=9.9e-20  Score=146.50  Aligned_cols=74  Identities=30%  Similarity=0.465  Sum_probs=67.8

Q ss_pred             CCCCCHHHHHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALM---HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~---~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+|||||+||++||++|+   .+|+++||||||+|||+...+.+++.|.++.+ .|.|||++||+++++..+|+++.
T Consensus       807 ~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl~~i~~aDrVi~  883 (1809)
T PRK00635        807 LSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMHVVKVADYVLE  883 (1809)
T ss_pred             cccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhCCEEEE
Confidence            4689999999999999998   69999999999999999999999999999865 48999999999999966888764

>PLN03140 ABC transporter G family member; Provisional

Probab=99.80  E-value=4.8e-20  Score=147.01  Aligned_cols=75  Identities=24%  Similarity=0.250  Sum_probs=67.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH-HHHH-hhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI-EEAR-QAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~-~~~~-~~d~i~~   76 (79)
                      ++.|||||||||+||++|+.+|++++|||||+|||+.+..++.+.|+++++..|.|+|+++|++ +++. .+|+++.
T Consensus       334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vil  410 (1470)
T PLN03140        334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIIL  410 (1470)
T ss_pred             ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEE
Confidence            4689999999999999999999999999999999999999999999999766689999999986 3544 4888754

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.80  E-value=1.9e-19  Score=132.63  Aligned_cols=70  Identities=27%  Similarity=0.351  Sum_probs=63.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +..||||||.|+.+|+.++.+|.+|||||||+.||..+.+.+.+.|.++    ..|||+||||..++.. +.+++
T Consensus       437 v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~  507 (530)
T COG0488         437 VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYFLDRVATRIW  507 (530)
T ss_pred             hhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEE
Confidence            5689999999999999999999999999999999999999999988876    3499999999999987 66654

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.80  E-value=5e-19  Score=112.74  Aligned_cols=71  Identities=30%  Similarity=0.366  Sum_probs=65.6

Q ss_pred             CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           4 SSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      +||+||+||++++++|+.    +|+++++|||++|+|+..+..+.+.+.++.++ |.++|++||+.+....+|+++
T Consensus        77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~~d~~~  151 (162)
T cd03227          77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAELADKLI  151 (162)
T ss_pred             eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHhhhhEE
Confidence            589999999999999987    78999999999999999999999999988666 889999999999988888865

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>KOG0059|consensus

Probab=99.79  E-value=3.2e-19  Score=137.18  Aligned_cols=72  Identities=39%  Similarity=0.798  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i   74 (79)
                      ++.||||+|+|+++|.|++.+|++++|||||+|+||.+++.+++++.+..++ |+++|++||.+++++. |+|+
T Consensus       696 ~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~-g~aiiLTSHsMeE~EaLCtR~  768 (885)
T KOG0059|consen  696 VRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN-GKAIILTSHSMEEAEALCTRT  768 (885)
T ss_pred             hhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHHhhhh
Confidence            5789999999999999999999999999999999999999999999998654 5599999999999987 7874

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.79  E-value=4.9e-19  Score=118.91  Aligned_cols=73  Identities=27%  Similarity=0.379  Sum_probs=65.7

Q ss_pred             CCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           3 ISSRGGQQRRVSFAVALMH------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      .+|||||||||.+||.|++      ++++++|||||++||..-+..+++..++++++ |..|+.|-||++.+.. +|+++
T Consensus       134 ~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDriv  212 (259)
T COG4559         134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIV  212 (259)
T ss_pred             hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheee
Confidence            4799999999999999986      44689999999999999999999999999876 6899999999999875 89876


Q ss_pred             c
Q psy5634          76 D   76 (79)
Q Consensus        76 ~   76 (79)
                      -
T Consensus       213 l  213 (259)
T COG4559         213 L  213 (259)
T ss_pred             e
Confidence            3

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.78  E-value=4.1e-19  Score=117.93  Aligned_cols=72  Identities=15%  Similarity=0.251  Sum_probs=60.3

Q ss_pred             CCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEecCHHHHHh-hcc
Q psy5634           2 EISSRGGQQRRVSFAVAL----MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGN-KTVIITTHYIEEARQ-AHT   73 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral----~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~tH~~~~~~~-~d~   73 (79)
                      +.+||+||||++.+++++    +.+|+++++||||+|||+..+..+++.+.+..++.| .|+|++||++..... +|+
T Consensus       124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~  201 (213)
T cd03277         124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEK  201 (213)
T ss_pred             hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCc
Confidence            578999999998877554    589999999999999999999999999999865524 689999999866543 554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.78  E-value=7.9e-19  Score=128.48  Aligned_cols=74  Identities=24%  Similarity=0.390  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +..||||||||+++||||..+|.+++||||-++||......+.+.+.... ..|.|+|++||.+.....+|++..
T Consensus       470 G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvviaHRPs~L~~~Dkilv  543 (580)
T COG4618         470 GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIAHRPSALASVDKILV  543 (580)
T ss_pred             CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEEecCHHHHhhcceeee
Confidence            35799999999999999999999999999999999999999999999885 458999999999999999999764

>KOG0062|consensus

Probab=99.78  E-value=2.9e-19  Score=130.80  Aligned_cols=65  Identities=32%  Similarity=0.368  Sum_probs=58.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      .++||||||.|++|||||..+||+|||||||+.||..+..-+-+.|..+    +.|+|+||||..+...
T Consensus       196 t~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVSHDr~FLn~  260 (582)
T KOG0062|consen  196 TKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVSHDRNFLNT  260 (582)
T ss_pred             ccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEeccHHHHHH
Confidence            4689999999999999999999999999999999999887776666543    5799999999998876

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.77  E-value=2e-18  Score=117.94  Aligned_cols=70  Identities=23%  Similarity=0.341  Sum_probs=62.5

Q ss_pred             CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           4 SSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      .||+||+||+++|++++.    +|+++++|||+++||+.....+.+.+.+..+  +.|+|++||++.....+|+++
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~~~~~d~~~  243 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQVAAMADNHF  243 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHHHHhcCcEE
Confidence            599999999999987654    9999999999999999999999999998753  689999999998776688764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.77  E-value=4.6e-19  Score=114.60  Aligned_cols=75  Identities=27%  Similarity=0.440  Sum_probs=68.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      |.+||||||-||++-|+|+..|+.++|||||+.||...+.++.+.+.+..+..|..+++||||.+.+....++++
T Consensus       132 P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie  206 (213)
T COG4136         132 PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIE  206 (213)
T ss_pred             hhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeee
Confidence            568999999999999999999999999999999999999999998888778889999999999998876667664

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.76  E-value=2.2e-18  Score=115.97  Aligned_cols=74  Identities=28%  Similarity=0.464  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.-|||||||-++++.|.+++|++++|||.|++|||.....+++.=.++.++.+.|.+||||+++.+-. .+|.+
T Consensus       146 iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlI  220 (263)
T COG1101         146 IGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLI  220 (263)
T ss_pred             hhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEE
Confidence            456999999999999999999999999999999999999999999888888889999999999998865 55544

>TIGR00634 recN DNA repair protein RecN

Probab=99.76  E-value=4.5e-18  Score=125.72  Aligned_cols=71  Identities=30%  Similarity=0.390  Sum_probs=64.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           3 ISSRGGQQRRVSFAVALMHD----PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~----p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      ..|||||+||++||++++..    |+++|||||++|+|+.....+.+.+.++. + +.+||++||++..+..+|+++
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~-~~~vi~iTH~~~~~~~ad~~~  513 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-E-RHQVLCVTHLPQVAAHADAHF  513 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEEChHHHHHhcCeEE
Confidence            46899999999999999985    69999999999999999999999999985 3 789999999999888788865

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.75  E-value=2.6e-18  Score=125.53  Aligned_cols=72  Identities=21%  Similarity=0.298  Sum_probs=63.6

Q ss_pred             CCCCCHHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           2 EISSRGGQQRRVSFAVALM----------HDPELLILDEPT-VGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~----------~~p~~lllDEP~-~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      +.+|||||+||++||++|+          .+|+++|||||| ++||+.....+.+.+.++  . |.|||++||+......
T Consensus       466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~-~~~iiiish~~~~~~~  542 (562)
T PHA02562        466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--K-DTNVFVISHKDHDPQK  542 (562)
T ss_pred             hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--C-CCeEEEEECchhchhh
Confidence            4689999999999999988          599999999998 789999999999999887  2 7899999999877777


Q ss_pred             hcceec
Q psy5634          71 AHTVID   76 (79)
Q Consensus        71 ~d~i~~   76 (79)
                      +|+++.
T Consensus       543 ~d~~~~  548 (562)
T PHA02562        543 FDRHLK  548 (562)
T ss_pred             hhcEEE
Confidence            887653

>KOG0061|consensus

Probab=99.75  E-value=2.6e-18  Score=128.31  Aligned_cols=72  Identities=32%  Similarity=0.518  Sum_probs=64.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH--HHHhhccee
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE--EARQAHTVI   75 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~--~~~~~d~i~   75 (79)
                      +.+||||||||+||.-|+.+|.++++||||+|||..+..++.+.|++++++ |+|||++=|.+.  ...-.|+++
T Consensus       169 rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~  242 (613)
T KOG0061|consen  169 RGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLL  242 (613)
T ss_pred             CccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhh
Confidence            569999999999999999999999999999999999999999999999887 999999999974  233356543

>TIGR00618 sbcc exonuclease SbcC

Probab=99.75  E-value=7.7e-18  Score=131.00  Aligned_cols=73  Identities=23%  Similarity=0.242  Sum_probs=66.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-
Q psy5634           2 EISSRGGQQRRVSFAVALMH----------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-   70 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~----------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-   70 (79)
                      +.+|||||++|++||+||+.          +|+++|+||||+|||+.+...+++.|.++.. .|.+|+|+||++++... 
T Consensus       948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618       948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHhh
Confidence            57899999999999999986          7999999999999999999999999999865 68999999999999876 


Q ss_pred             hccee
Q psy5634          71 AHTVI   75 (79)
Q Consensus        71 ~d~i~   75 (79)
                      +++|+
T Consensus      1027 ~~~i~ 1031 (1042)
T TIGR00618      1027 PHRIL 1031 (1042)
T ss_pred             CCEEE
Confidence            56653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK10869 recombination and repair protein; Provisional

Probab=99.73  E-value=1.7e-17  Score=122.70  Aligned_cols=70  Identities=24%  Similarity=0.385  Sum_probs=63.9

Q ss_pred             CCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           4 SSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      .+||||+||++||++++.    +|+++|||||++|+|......+.+.+.++. + +.+||+|||++..+..+|+++
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~-~~qvi~iTH~~~~~~~ad~~~  503 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-E-STQVMCVTHLPQVAGCGHQHF  503 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHhCCEEE
Confidence            589999999999999997    589999999999999999999999999885 3 689999999999888788754

>PRK03918 chromosome segregation protein; Provisional

Probab=99.73  E-value=2.1e-17  Score=125.76  Aligned_cols=74  Identities=30%  Similarity=0.331  Sum_probs=63.4

Q ss_pred             CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           2 EISSRGGQQR------RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kq------rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      +..|||||++      |++++++++.+|+++|+||||+|||+..+..+.+.|..+... +.+||++||+..+...+|+++
T Consensus       786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~-~~~iiiith~~~~~~~~d~~~  864 (880)
T PRK03918        786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRK-IPQVIIVSHDEELKDAADYVI  864 (880)
T ss_pred             hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHhCCeEE
Confidence            4689999999      455666888999999999999999999999999999887543 679999999998776788865


Q ss_pred             c
Q psy5634          76 D   76 (79)
Q Consensus        76 ~   76 (79)
                      .
T Consensus       865 ~  865 (880)
T PRK03918        865 R  865 (880)
T ss_pred             E
Confidence            3

>KOG0054|consensus

Probab=99.73  E-value=1.4e-17  Score=131.99  Aligned_cols=75  Identities=31%  Similarity=0.484  Sum_probs=66.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      ++-+||||||||+++|||+-+++|+++||.|++++|....+.+++....-.- .++|+|+|||.+++...+|.|+.
T Consensus       640 rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~ILVTHql~~L~~ad~Iiv  714 (1381)
T KOG0054|consen  640 RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVILVTHQLQFLPHADQIIV  714 (1381)
T ss_pred             CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCchhhhhhCCEEEE
Confidence            4568999999999999999999999999999999999999998876664332 37999999999999999998763

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.72  E-value=7.7e-18  Score=110.60  Aligned_cols=74  Identities=27%  Similarity=0.381  Sum_probs=66.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      |.++|||+||||.|||+++.+-++++|||||+.||..++.-+.+++.+. +..|.+++=+-||.+.-+. +||++.
T Consensus       150 PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~-Ka~GaAlvGIFHDeevre~vadR~~~  224 (235)
T COG4778         150 PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA-KARGAALVGIFHDEEVREAVADRLLD  224 (235)
T ss_pred             CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH-HhcCceEEEeeccHHHHHHHhhheee
Confidence            6789999999999999999999999999999999999999999999886 5569999999999766555 788653

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.72  E-value=1.1e-17  Score=111.49  Aligned_cols=70  Identities=24%  Similarity=0.416  Sum_probs=64.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV   74 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i   74 (79)
                      ..||.||||++.|+..++++|+++++|||++|+......+..+++++++.  +.+|++|.|||.++.. ++++
T Consensus       146 ~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~V  216 (249)
T COG4674         146 ALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVREIADKV  216 (249)
T ss_pred             hhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHHHHhhhee
Confidence            46999999999999999999999999999999999999999999999864  5899999999999987 6654

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=8.8e-18  Score=121.10  Aligned_cols=72  Identities=28%  Similarity=0.512  Sum_probs=66.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      -.|||||||||+|||+++.+|++++|||.|++||..+.+++...+.+..  .|.|.+++.|.+..+-.+|.|+.
T Consensus       398 lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrlsti~~adeiiv  469 (497)
T COG5265         398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLSTIIDADEIIV  469 (497)
T ss_pred             eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhhccCCceEEE
Confidence            4699999999999999999999999999999999999999999999875  37899999999999999998764

>PRK01156 chromosome segregation protein; Provisional

Probab=99.71  E-value=4.8e-17  Score=124.65  Aligned_cols=75  Identities=32%  Similarity=0.358  Sum_probs=64.4

Q ss_pred             CCCCCHHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-C-cEEEEEecCHHHHHhhcc
Q psy5634           2 EISSRGGQQRRVSF------AVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG-N-KTVIITTHYIEEARQAHT   73 (79)
Q Consensus         2 ~~~lS~G~kqrv~l------aral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~-g-~tvi~~tH~~~~~~~~d~   73 (79)
                      +..|||||+++++|      |++++.+|++++|||||++||+.....+.+++....+.. | .++|++||+..++..||+
T Consensus       799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~  878 (895)
T PRK01156        799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADV  878 (895)
T ss_pred             cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCe
Confidence            56899999999975      589999999999999999999999999999887654432 3 489999999998877888


Q ss_pred             eec
Q psy5634          74 VID   76 (79)
Q Consensus        74 i~~   76 (79)
                      ++.
T Consensus       879 ii~  881 (895)
T PRK01156        879 AYE  881 (895)
T ss_pred             EEE
Confidence            764

>TIGR00606 rad50 rad50

Probab=99.71  E-value=4.3e-17  Score=129.14  Aligned_cols=69  Identities=26%  Similarity=0.318  Sum_probs=62.3

Q ss_pred             CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEecCHHHHHh
Q psy5634           2 EISSRGGQQR------RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITK----DGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         2 ~~~lS~G~kq------rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~----~~g~tvi~~tH~~~~~~~   70 (79)
                      .+.|||||+|      |++||++++.+|++++|||||+|||+.+...+...|.++..    ..|.+||++||++.++..
T Consensus      1197 ~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606      1197 RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred             CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence            4689999999      99999999999999999999999999999999988887642    237899999999998875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.71  E-value=2.7e-17  Score=126.29  Aligned_cols=72  Identities=22%  Similarity=0.242  Sum_probs=64.4

Q ss_pred             CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           2 EISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      +..|||||+++++||++++    .+|+++|||||+++||+.....+.++|..+.+  +.++||+||++.+...||+++
T Consensus      1087 ~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~~~~~~d~~~ 1162 (1179)
T TIGR02168      1087 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKGTMEVADQLY 1162 (1179)
T ss_pred             ccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChhHHHHhhhHe
Confidence            5789999999999999984    67799999999999999999999999998753  478999999999887788864

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=5.2e-17  Score=107.11  Aligned_cols=66  Identities=27%  Similarity=0.249  Sum_probs=59.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA   68 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~   68 (79)
                      +.+||.|||+||+|||-.+..++++||||||++||......+-..+...+.. |..||.+||..--+
T Consensus       128 ~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~-GGiVllttHq~l~~  193 (209)
T COG4133         128 VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ-GGIVLLTTHQPLPI  193 (209)
T ss_pred             hhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcC-CCEEEEecCCccCC
Confidence            5689999999999999999999999999999999999999999988887655 66899999986443

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.70  E-value=9.4e-17  Score=125.31  Aligned_cols=70  Identities=23%  Similarity=0.204  Sum_probs=63.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh
Q psy5634           1 MEISSRGGQQRRVSFAVALMH--------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQA   71 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~--------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~   71 (79)
                      ++.+|||||+++++|++||+.        +|+++|+||||++||+.....+++.|..+.+ .|.||+||||...+....
T Consensus       946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246        946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred             CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHHHHHHhc
Confidence            367899999999999999996        8999999999999999999999999999864 589999999987776654

>KOG0927|consensus

Probab=99.69  E-value=7.1e-17  Score=118.91  Aligned_cols=71  Identities=27%  Similarity=0.341  Sum_probs=61.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+|||||+.|++|||+|..+|++++|||||++||+.+..-+-+.|.++ .+  .++++++|..+++.. |-+|+
T Consensus       219 ~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~-d~--~~lVi~sh~QDfln~vCT~Ii  290 (614)
T KOG0927|consen  219 VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-DR--IILVIVSHSQDFLNGVCTNII  290 (614)
T ss_pred             hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc-cC--ceEEEEecchhhhhhHhhhhh
Confidence            4589999999999999999999999999999999999988888777765 22  289999999999877 44444

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.69  E-value=7.9e-17  Score=117.39  Aligned_cols=75  Identities=25%  Similarity=0.350  Sum_probs=69.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      ++.+||||+.|||+||.+|.+++|+++||||.+-||...+-.+.+.+++...+.++|.++|.||+-++.. +|+++
T Consensus       452 ~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~i  527 (591)
T COG1245         452 PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI  527 (591)
T ss_pred             ccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEE
Confidence            3578999999999999999999999999999999999999999999999988888999999999988876 78764

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.69  E-value=1.2e-16  Score=104.58  Aligned_cols=72  Identities=22%  Similarity=0.166  Sum_probs=59.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWN-HLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~-~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      .+++|+||+|++.+++++ .+|+++++|||++|+|+..+..+.. .+.++. +.|.++|++||+.+....+|+++
T Consensus        89 ~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~-~~~~~vi~~tH~~~l~~~~d~~~  161 (200)
T cd03280          89 LSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELL-ERGALVIATTHYGELKAYAYKRE  161 (200)
T ss_pred             cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECCHHHHHHHHhcCC
Confidence            357899999999999885 7999999999999999999999865 566654 45899999999976655677643

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0056|consensus

Probab=99.68  E-value=3.2e-17  Score=120.71  Aligned_cols=73  Identities=25%  Similarity=0.479  Sum_probs=67.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +-.|||||||||+|||+++.+|.+++|||.|++||..+.+.+...+.+++.  ++|.|++.|.+..+-.+|.|+.
T Consensus       672 GLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLSTivnAD~ILv  744 (790)
T KOG0056|consen  672 GLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLSTIVNADLILV  744 (790)
T ss_pred             ccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehheecccEEEE
Confidence            447999999999999999999999999999999999999999999999975  6899999999999888887653

>KOG0062|consensus

Probab=99.67  E-value=1.4e-16  Score=116.87  Aligned_cols=69  Identities=32%  Similarity=0.426  Sum_probs=61.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      .+||||||-||++|.+...+|.+|+|||||+.||..+...+.+.|+.+    +..||+||||.+++.. |..++
T Consensus       481 ~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~VSHd~~fi~~~c~E~W  550 (582)
T KOG0062|consen  481 ASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLVSHDEEFISSLCKELW  550 (582)
T ss_pred             cccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEEECcHHHHhhcCceeE
Confidence            579999999999999999999999999999999999999998888765    2369999999999987 55544

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.66  E-value=2.8e-16  Score=104.41  Aligned_cols=76  Identities=24%  Similarity=0.362  Sum_probs=70.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++..||.||||||++||||+.+|+++|.||..++||...+.++.+++.++.++.|.+.|+|+.++..++. +|+++.
T Consensus       146 ~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viV  222 (267)
T COG4167         146 YPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLV  222 (267)
T ss_pred             chhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEE
Confidence            3567999999999999999999999999999999999999999999999988889999999999999987 787764

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=4.9e-16  Score=105.00  Aligned_cols=70  Identities=27%  Similarity=0.423  Sum_probs=64.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh--cce
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQA--HTV   74 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~--d~i   74 (79)
                      .+|||+|+|..|+.+++.+|++.|||||-||||..+-+.+.+.+..+. +.|.+++++||....+...  |++
T Consensus       144 GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr-~~~~~~liITHy~rll~~i~pD~v  215 (251)
T COG0396         144 GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR-EEGRGVLIITHYQRLLDYIKPDKV  215 (251)
T ss_pred             CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHhhcCCCEE
Confidence            699999999999999999999999999999999999999999999885 5589999999999888764  554

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.65  E-value=7.2e-16  Score=104.59  Aligned_cols=74  Identities=24%  Similarity=0.408  Sum_probs=68.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      ++++||.||+-|++++.|...+|++||+||-.+--|+..+++..+.+.++.++ +.|+|+|||+++.+++ ||+++
T Consensus       144 PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~-~~tiv~VSHd~~~I~~~Cd~~i  218 (249)
T COG1134         144 PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHDLGAIKQYCDRAI  218 (249)
T ss_pred             chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhcCeeE
Confidence            36789999999999999999999999999999999999999999999998654 6999999999999987 88854

>KOG0927|consensus

Probab=99.65  E-value=1.6e-16  Score=117.02  Aligned_cols=69  Identities=29%  Similarity=0.390  Sum_probs=61.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i   74 (79)
                      .++||+|||+||.+|+.++.+|.+++|||||+|||......+.+.|.++    ..+||++|||..++.+ ++++
T Consensus       507 ~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi  576 (614)
T KOG0927|consen  507 MSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVVLVSHDFRLISQVAEEI  576 (614)
T ss_pred             hhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCceeeeechhhHHHHHHHHh
Confidence            4689999999999999999999999999999999999999998887764    3479999999998876 5554

>KOG0054|consensus

Probab=99.64  E-value=7.1e-16  Score=122.42  Aligned_cols=73  Identities=26%  Similarity=0.338  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.++|.||||.+|+||||++++++++|||.|+++|+.+-..+.+.|++..+  ++||+.+.|.++.+..+|+|+.
T Consensus      1273 G~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVmd~DrVlV 1345 (1381)
T KOG0054|consen 1273 GENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVMDSDRVLV 1345 (1381)
T ss_pred             CccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhhhcCeEEE
Confidence            578999999999999999999999999999999999999999999998654  6999999999999999999864

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.64  E-value=6.7e-16  Score=119.16  Aligned_cols=72  Identities=11%  Similarity=0.110  Sum_probs=64.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           2 EISSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      +..||||||++++||++++.    +|++++||||+++||+..+..+.++|.++..  +.++|++||+......+|+++
T Consensus      1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~~~~~~d~~~ 1147 (1164)
T TIGR02169      1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSPMIEYADRAI 1147 (1164)
T ss_pred             chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHHHhcceeE
Confidence            56899999999999999985    7899999999999999999999999988743  478999999998887788875

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.63  E-value=1.6e-16  Score=107.56  Aligned_cols=77  Identities=29%  Similarity=0.498  Sum_probs=70.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecCC
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDNY   78 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~~   78 (79)
                      |.+|.-|+.|||.||.|++.+|+++|.||||+.+++.++.++++++.+++...|.||++++||+..+.+ +|++-..|
T Consensus       156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlY  233 (330)
T COG4170         156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLY  233 (330)
T ss_pred             cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEE
Confidence            678899999999999999999999999999999999999999999999988889999999999999887 88865443

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.63  E-value=1.1e-15  Score=111.52  Aligned_cols=72  Identities=26%  Similarity=0.380  Sum_probs=65.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i   74 (79)
                      +++||||+-||++||.+++++++++++|||++-||...+-...+.++++++. +++||+|.||+..... +|-+
T Consensus       211 v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~v  283 (591)
T COG1245         211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFV  283 (591)
T ss_pred             hhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHHHHHhhhee
Confidence            4689999999999999999999999999999999999999999999999765 8999999999987765 5543

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.62  E-value=1e-15  Score=116.66  Aligned_cols=73  Identities=30%  Similarity=0.444  Sum_probs=68.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           3 ISSRGGQQRRVSFAVALMHDP---ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p---~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      .+|||||.||+-||.-|....   -++||||||+||...-.+++++.|.++.. .|.|||++.||++.++.+|.|+.
T Consensus       821 tTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTViVIEHNLdVIk~AD~IID  896 (935)
T COG0178         821 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIEHNLDVIKTADWIID  896 (935)
T ss_pred             ccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecccceEeecCEEEE
Confidence            589999999999999999887   99999999999999999999999999975 48999999999999999999875

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.61  E-value=2e-15  Score=112.57  Aligned_cols=66  Identities=29%  Similarity=0.379  Sum_probs=59.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      ..||+|||||+++||.+.++|++++|||.|++||+.+...+++.+++..  .+.|||-|+|....-..
T Consensus       514 ~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~tl~~~  579 (604)
T COG4178         514 RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPTLWNF  579 (604)
T ss_pred             hhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchhhHHH
Confidence            3599999999999999999999999999999999999999999998754  37999999998765443

>PRK02224 chromosome segregation protein; Provisional

Probab=99.60  E-value=3.3e-15  Score=114.20  Aligned_cols=75  Identities=24%  Similarity=0.324  Sum_probs=63.4

Q ss_pred             CCCCCHHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634           2 EISSRGGQQR------RVSFAVALMHD-----P-ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus         2 ~~~lS~G~kq------rv~laral~~~-----p-~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      +..||||||+      |++++++++.+     | +++|+||||+++|+.....+.+.|..+...+..+||++||+..++.
T Consensus       779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~  858 (880)
T PRK02224        779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG  858 (880)
T ss_pred             hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH
Confidence            4689999999      88888888864     2 6799999999999999999999998875432248999999999988


Q ss_pred             hhcceec
Q psy5634          70 QAHTVID   76 (79)
Q Consensus        70 ~~d~i~~   76 (79)
                      .+|+++.
T Consensus       859 ~ad~~~~  865 (880)
T PRK02224        859 AADDLVR  865 (880)
T ss_pred             hcCeeEE
Confidence            8888754

>KOG0066|consensus

Probab=99.53  E-value=9.8e-15  Score=107.01  Aligned_cols=65  Identities=29%  Similarity=0.366  Sum_probs=58.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      ..+|||||+.||++|-.-+..|+++||||||++||..+...+.+.|.++    ...|||||||-..+..
T Consensus       702 ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeRLi~e  766 (807)
T KOG0066|consen  702 IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDERLIVE  766 (807)
T ss_pred             eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccceeee
Confidence            3579999999999999999999999999999999999999999988876    2369999999887754

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.52  E-value=6e-14  Score=91.85  Aligned_cols=69  Identities=16%  Similarity=0.141  Sum_probs=54.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHHHhhcc
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH-LVQITKDGNKTVIITTHYIEEARQAHT   73 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~-l~~~~~~~g~tvi~~tH~~~~~~~~d~   73 (79)
                      +.+|.+++| +..+.+++.+|+++|+|||++|+|+.....+... +..+ .+.+.++|++||+.+++..+++
T Consensus        90 s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l-~~~~~~vi~~tH~~~~~~~~~~  159 (202)
T cd03243          90 STFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHL-LEKGCRTLFATHFHELADLPEQ  159 (202)
T ss_pred             eeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCeEEEECChHHHHHHhhc
Confidence            356666665 6666788899999999999999999998887654 4444 3458899999999988877663

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.52  E-value=3.1e-14  Score=103.87  Aligned_cols=75  Identities=27%  Similarity=0.421  Sum_probs=69.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceecC
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVIDN   77 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~~   77 (79)
                      ..+||||.+||+-+||=|..+|+++|+-+||.|||..+.+.+.+.+.+.. +.|++|+++|-+++++.. +|+|..-
T Consensus       401 a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r-~~G~AVLLiS~dLDEil~lsDrIaVi  476 (501)
T COG3845         401 ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR-DAGKAVLLISEDLDEILELSDRIAVI  476 (501)
T ss_pred             hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHH-hcCCEEEEEehhHHHHHHhhheeeee
Confidence            46899999999999999999999999999999999999999999999985 459999999999999876 8987653

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.51  E-value=7.5e-14  Score=93.28  Aligned_cols=70  Identities=20%  Similarity=0.095  Sum_probs=54.8

Q ss_pred             CCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634           3 ISSRGGQQRRVSFAVAL--MHDPELLILDEP---TVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         3 ~~lS~G~kqrv~laral--~~~p~~lllDEP---~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      ..+|.|+++++.+++++  +.+|+++|+|||   |+++|+.....  ..+..+.++.|.++|++||+.+....+|++
T Consensus        88 ~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vlisTH~~el~~~~~~~  162 (222)
T cd03285          88 KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLFATHFHELTALADEV  162 (222)
T ss_pred             cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEEEechHHHHHHhhcC
Confidence            57999999999999999  899999999999   88899887754  333444333478999999975554446653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.51  E-value=3.8e-14  Score=96.58  Aligned_cols=62  Identities=19%  Similarity=0.251  Sum_probs=51.3

Q ss_pred             CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           4 SSRGGQQRRVSFAVALM---------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         4 ~lS~G~kqrv~laral~---------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      .+|+||+|++++|++|+         .+|+++++||||++||+..++.+.+.+.+.    + .+++++|+...+..
T Consensus       183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~~~~~  253 (270)
T cd03242         183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLADFDA  253 (270)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCchhccc
Confidence            48999999999999985         799999999999999999999998888754    2 35666666555443

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.51  E-value=8.2e-14  Score=90.40  Aligned_cols=69  Identities=17%  Similarity=0.127  Sum_probs=49.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecCHHHHHhhc
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWN-HLVQITKDGNKTVIITTHYIEEARQAH   72 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~-~l~~~~~~~g~tvi~~tH~~~~~~~~d   72 (79)
                      ++||+|++|...+.. .+.+|+++|+|||++|+|+.....+.. +++.+.++.+.++|++||+.+....++
T Consensus        60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~  129 (185)
T smart00534       60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLAD  129 (185)
T ss_pred             cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhh
Confidence            467777776433332 234999999999999999998887654 445554334789999999997655454

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.50  E-value=1.9e-14  Score=88.21  Aligned_cols=31  Identities=48%  Similarity=0.836  Sum_probs=30.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTV   33 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~   33 (79)
                      ..||+|||||++||+|++.+|+++||||||+
T Consensus       107 ~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen  107 SSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            6899999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG0065|consensus

Probab=99.48  E-value=1.4e-14  Score=114.43  Aligned_cols=72  Identities=24%  Similarity=0.398  Sum_probs=64.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH--HHHhhccee
Q psy5634           3 ISSRGGQQRRVSFAVALMHDP-ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE--EARQAHTVI   75 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p-~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~--~~~~~d~i~   75 (79)
                      ..||.+||||+.||--|+.+| .+|+|||||+|||..+...+++.++++++ .|.||+++=|.+.  ..+..|+++
T Consensus       928 ~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LL 1002 (1391)
T KOG0065|consen  928 SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELL 1002 (1391)
T ss_pred             CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHH
Confidence            469999999999999999999 99999999999999999999999999986 5999999999985  345677653

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.48  E-value=9.5e-15  Score=96.55  Aligned_cols=73  Identities=22%  Similarity=0.411  Sum_probs=62.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhc-----C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH-hhcc
Q psy5634           2 EISSRGGQQRRVSFAVALMH-----D--PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR-QAHT   73 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~-----~--p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~-~~d~   73 (79)
                      ..+|||||-|||-+|...+.     |  .+++++|||.++||...+..+-..+.+++.. |.+|||++||++-.. .+|+
T Consensus       123 ~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~-G~~vims~HDLNhTLrhA~~  201 (248)
T COG4138         123 TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHR  201 (248)
T ss_pred             hhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC-CcEEEEeccchhhHHHHHHH
Confidence            56899999999999977654     3  3799999999999999999999999999865 999999999998654 4776


Q ss_pred             ee
Q psy5634          74 VI   75 (79)
Q Consensus        74 i~   75 (79)
                      ++
T Consensus       202 ~w  203 (248)
T COG4138         202 AW  203 (248)
T ss_pred             HH
Confidence            53

>TIGR00611 recf recF protein

Probab=99.44  E-value=2.8e-13  Score=96.20  Aligned_cols=62  Identities=21%  Similarity=0.329  Sum_probs=55.9

Q ss_pred             CCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634           4 SSRGGQQRRVSFAVALMH---------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~---------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      .+|.||+|++.+|..|+.         +|+++|||||+++||+..++.+++.+.+.    |.+++++||+.+.+.
T Consensus       275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~~~~  345 (365)
T TIGR00611       275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLDHLK  345 (365)
T ss_pred             hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChhhcc
Confidence            589999999999999999         99999999999999999999999888643    679999999987653

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=99.43  E-value=7.8e-13  Score=102.22  Aligned_cols=73  Identities=29%  Similarity=0.328  Sum_probs=63.8

Q ss_pred             CCCCCHHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcc
Q psy5634           2 EISSRGGQQRRVSFAVALM------HD--PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHT   73 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~------~~--p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~   73 (79)
                      +.+||||++-.++||.+|+      .+  -+++++||||..||+...+.++++|..+... +.+|++|||+.++...+|.
T Consensus       813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~eel~e~~~~  891 (908)
T COG0419         813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVEELKERADV  891 (908)
T ss_pred             cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChHHHHHhCCe
Confidence            5789999999888876654      45  7999999999999999999999999998654 8999999999999888887


Q ss_pred             ee
Q psy5634          74 VI   75 (79)
Q Consensus        74 i~   75 (79)
                      ++
T Consensus       892 ~i  893 (908)
T COG0419         892 RI  893 (908)
T ss_pred             EE
Confidence            54

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.43  E-value=6.4e-13  Score=101.69  Aligned_cols=73  Identities=27%  Similarity=0.457  Sum_probs=67.0

Q ss_pred             CCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           3 ISSRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      .+|||||.||+.||.-+-.+=  =+++||||+.||-+.-.+++.+.|+++ ++.|.|+|+|.||.+.+..+|.++.
T Consensus       480 ~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~L-RDlGNTviVVEHDedti~~AD~iID  554 (935)
T COG0178         480 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRL-RDLGNTVIVVEHDEDTIRAADHIID  554 (935)
T ss_pred             CCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHH-HhcCCeEEEEecCHHHHhhcCEEEe
Confidence            589999999999999998773  689999999999999999999999998 5669999999999999999999875

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.43  E-value=1.3e-12  Score=85.94  Aligned_cols=70  Identities=31%  Similarity=0.412  Sum_probs=54.8

Q ss_pred             CCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           4 SSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         4 ~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      .||||||..++||.-|+    .++++++||||.++||+..+..+.+.|.+..+  +.-+|++||+......+|+.+
T Consensus       136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~Th~~~~~~~a~~~~  209 (220)
T PF02463_consen  136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIITTHNPEMFEDADKLI  209 (220)
T ss_dssp             GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE-S-HHHHTT-SEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccc
Confidence            58999999999987653    46799999999999999999999999998743  478999999999988888754

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.40  E-value=1.6e-12  Score=86.07  Aligned_cols=66  Identities=17%  Similarity=0.169  Sum_probs=52.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWN-HLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~-~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      +.+|+|++|. ..+.+++.+|+++++|||++|+|+.....+.. ++..+. +.|.++|++||+.+++..
T Consensus        90 S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~-~~~~~~i~~TH~~~l~~~  156 (204)
T cd03282          90 STFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI-KKESTVFFATHFRDIAAI  156 (204)
T ss_pred             hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECChHHHHHH
Confidence            4688999975 55566889999999999999999987666544 455554 458999999999998765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0066|consensus

Probab=99.39  E-value=8.9e-14  Score=102.05  Aligned_cols=64  Identities=36%  Similarity=0.359  Sum_probs=55.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      ..+|||+|.||++||||...|-+++|||||+.||....--+-+.|.-+    .+|.+|||||..+...
T Consensus       411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW----kKTLLIVSHDQgFLD~  474 (807)
T KOG0066|consen  411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQGFLDS  474 (807)
T ss_pred             cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh----hheeEEEecccchHHH
Confidence            369999999999999999999999999999999988776666665554    4699999999998876

>PRK00064 recF recombination protein F; Reviewed

Probab=99.39  E-value=1.3e-12  Score=92.49  Aligned_cols=64  Identities=25%  Similarity=0.334  Sum_probs=55.1

Q ss_pred             CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           3 ISSRGGQQRRVSFAVALM---------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~---------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      ..+|.||+|++.+|+.|+         .+|+++|+|||+++||+..++.+++.+.+.    +..++++||+.+.+..
T Consensus       272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~~~~  344 (361)
T PRK00064        272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLAD  344 (361)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhhhhh
Confidence            468999999999999986         799999999999999999999998877653    3579999998876543

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.36  E-value=1.5e-12  Score=94.23  Aligned_cols=74  Identities=24%  Similarity=0.464  Sum_probs=67.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      -.||-|||||+++..|++-+.+++++||=.+..||..++.+...+.-..++.|+||+.+|||-.-...+||++.
T Consensus       447 ~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~  520 (546)
T COG4615         447 LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLE  520 (546)
T ss_pred             cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHH
Confidence            36999999999999999999999999999999999999999998888778889999999999877777887654

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=99.35  E-value=2.3e-12  Score=102.99  Aligned_cols=60  Identities=28%  Similarity=0.429  Sum_probs=52.3

Q ss_pred             CCCCCHHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634           2 EISSRGGQQRRVS----FAVA--------LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus         2 ~~~lS~G~kqrv~----lara--------l~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      .+.|||||||++.    +|++        +..+|++++|||||+|+|+.+...+++++.++    |.++||+||.+
T Consensus      1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680      1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence            4689999999996    5644        55899999999999999999999999988876    67899999875

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.34  E-value=3.2e-12  Score=97.96  Aligned_cols=67  Identities=22%  Similarity=0.232  Sum_probs=57.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH-LVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~-l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      .++||+||++++.+++++ .+|.++|+|||++|+||.....+... +..+ .+.|.++|++||+.+....
T Consensus       388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l-~~~~~~vIitTH~~el~~~  455 (782)
T PRK00409        388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYL-RKRGAKIIATTHYKELKAL  455 (782)
T ss_pred             hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH-HHCCCEEEEECChHHHHHH
Confidence            467999999999999988 79999999999999999999988654 4444 4458899999999887765

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.34  E-value=8.5e-12  Score=79.68  Aligned_cols=65  Identities=29%  Similarity=0.392  Sum_probs=53.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634           3 ISSRGGQQRRVSFAVALMHDP---ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA   68 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p---~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~   68 (79)
                      ..+|.|+++.+.++..+...+   .++++|||-++|+|.....+.+.|.+..+ .+.-+|++||.+..+
T Consensus       235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~il  302 (303)
T PF13304_consen  235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPFIL  302 (303)
T ss_dssp             S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GGG-
T ss_pred             ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccchhc
Confidence            468999999999888887776   89999999999999999999999987754 478999999998654

>KOG2355|consensus

Probab=99.29  E-value=3e-12  Score=86.46  Aligned_cols=67  Identities=28%  Similarity=0.445  Sum_probs=62.0

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      ...|-|||+||.|+..|++.-++++|||.|-.||..++..+++.+++.++..|.||+++||-.+-.+
T Consensus       146 HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe  212 (291)
T KOG2355|consen  146 HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLE  212 (291)
T ss_pred             eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchh
Confidence            4579999999999999999999999999999999999999999999999888999999999765433

>KOG0060|consensus

Probab=99.28  E-value=1.4e-11  Score=91.86  Aligned_cols=63  Identities=25%  Similarity=0.299  Sum_probs=55.9

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      .||+||+||+++||.+.++|++.+|||-|+++|......+.+.+++    .|.|.|-|+|....-+.
T Consensus       570 vLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRkSL~kf  632 (659)
T KOG0060|consen  570 VLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE----MGITFISVGHRKSLWKF  632 (659)
T ss_pred             hcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH----cCCeEEEeccHHHHHhh
Confidence            5999999999999999999999999999999999988888776554    48999999998776543

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.28  E-value=3.4e-11  Score=79.27  Aligned_cols=62  Identities=31%  Similarity=0.311  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecCHHHHHhh
Q psy5634           9 QQRRVSFAVALMH--DPELLILDEPTVGVDPLLRQSIWN-HLVQITKDGNKTVIITTHYIEEARQA   71 (79)
Q Consensus         9 ~kqrv~laral~~--~p~~lllDEP~~glD~~~~~~i~~-~l~~~~~~~g~tvi~~tH~~~~~~~~   71 (79)
                      +.+++.-+...+.  +|+++|+|||++|+|+..+..+.. ++..+.+ .|.++|++||+++++...
T Consensus        90 e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~~~~  154 (199)
T cd03283          90 ELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELADLL  154 (199)
T ss_pred             HHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHHHhh
Confidence            4455555555555  999999999999999999987654 6676654 489999999999987654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.24  E-value=6e-11  Score=78.82  Aligned_cols=63  Identities=24%  Similarity=0.248  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhc--CCcEEEEEecCHHHHHh
Q psy5634           8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI-WNHLVQITKD--GNKTVIITTHYIEEARQ   70 (79)
Q Consensus         8 G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i-~~~l~~~~~~--~g~tvi~~tH~~~~~~~   70 (79)
                      -+-||++++++++.+|.++|+|||++|+|+.....+ ...++.+.+.  .+.++|++||+.+.+..
T Consensus        94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~  159 (213)
T cd03281          94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR  159 (213)
T ss_pred             HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence            457999999999999999999999999999865554 5677776543  13589999999998765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01069 mutS2 MutS2 family protein

Probab=99.21  E-value=4.8e-11  Score=91.48  Aligned_cols=66  Identities=24%  Similarity=0.273  Sum_probs=55.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIW-NHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~-~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      .++||+||+++..+++.+ .+|.++|+|||++|+||.....+. .++..+. +.|.++|++||+.+...
T Consensus       383 LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~-~~g~~viitTH~~eL~~  449 (771)
T TIGR01069       383 LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLL-KQNAQVLITTHYKELKA  449 (771)
T ss_pred             hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEECChHHHHH
Confidence            467999999999998876 789999999999999999999985 5565554 45889999999987643

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.18  E-value=5.7e-11  Score=86.63  Aligned_cols=73  Identities=23%  Similarity=0.351  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh--hcce
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ--AHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~--~d~i   74 (79)
                      .++||-|||.|+.||.+++..|.+++.||-.+.||+.+...+.+.+.+++++.|.|++++||+.++...  =|++
T Consensus       505 f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~l  579 (593)
T COG2401         505 FSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTL  579 (593)
T ss_pred             HhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCcee
Confidence            368999999999999999999999999999999999999999999999999899999999999998765  3554

>KOG0063|consensus

Probab=99.14  E-value=5.6e-11  Score=86.80  Aligned_cols=75  Identities=24%  Similarity=0.299  Sum_probs=65.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||++||+++|.+|-..+++++.|||.+-||...+...-..++++.-..++|-++|.||.-.+.. +|+++.
T Consensus       454 vq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrviv  529 (592)
T KOG0063|consen  454 VQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV  529 (592)
T ss_pred             hhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEE
Confidence            457999999999999999999999999999999999998887777777654557899999999877765 888764

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.09  E-value=4.5e-10  Score=74.74  Aligned_cols=68  Identities=25%  Similarity=0.303  Sum_probs=44.1

Q ss_pred             CCCHHHHHH----HHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcc
Q psy5634           4 SSRGGQQRR----VSFAVAL--MHDPELLILDEP---TVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHT   73 (79)
Q Consensus         4 ~lS~G~kqr----v~laral--~~~p~~lllDEP---~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~   73 (79)
                      ++|.|+.+.    ..+++++  +.+|+++|+|||   |+++|....  ...++..+.+..+.++|++||+.+....+++
T Consensus        85 ~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~  161 (216)
T cd03284          85 DLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYHELTELEGK  161 (216)
T ss_pred             hhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcHHHHHHhhc
Confidence            466666543    3465555  469999999999   777776542  2333444433337899999999866554443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.03  E-value=6.2e-10  Score=70.98  Aligned_cols=65  Identities=9%  Similarity=-0.026  Sum_probs=52.1

Q ss_pred             CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634           2 EISSRGGQQR------RVSFAVALMHDPELLILDEPTVGVD---PLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus         2 ~~~lS~G~kq------rv~laral~~~p~~lllDEP~~glD---~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      +..+|+|++|      +.....+...+|+++++|||++.+|   +..+..+.+.+..+.+ .|.|+|+++|+...
T Consensus        69 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~  142 (187)
T cd01124          69 PDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGL  142 (187)
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccC
Confidence            3467999988      4555555677999999999999999   7778888888877754 48999999998764

A related protein is found in archaea.

>PRK14079 recF recombination protein F; Provisional

Probab=99.03  E-value=4.7e-10  Score=79.28  Aligned_cols=46  Identities=24%  Similarity=0.395  Sum_probs=42.6

Q ss_pred             CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy5634           4 SSRGGQQRRVSFAVALM---------HDPELLILDEPTVGVDPLLRQSIWNHLVQ   49 (79)
Q Consensus         4 ~lS~G~kqrv~laral~---------~~p~~lllDEP~~glD~~~~~~i~~~l~~   49 (79)
                      -+|+||++++.+|+.|+         .+|+++++|||+++||+..+..+.+.+..
T Consensus       263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~  317 (349)
T PRK14079        263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAAS  317 (349)
T ss_pred             hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhc
Confidence            47999999999999999         89999999999999999999999887754

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=99.03  E-value=9.4e-10  Score=64.50  Aligned_cols=47  Identities=28%  Similarity=0.306  Sum_probs=36.0

Q ss_pred             CCCCHHHH-HHHHHHHHH------hc------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy5634           3 ISSRGGQQ-RRVSFAVAL------MH------DPELLILDEPTVGVDPLLRQSIWNHLVQ   49 (79)
Q Consensus         3 ~~lS~G~k-qrv~laral------~~------~p~~lllDEP~~glD~~~~~~i~~~l~~   49 (79)
                      +++||||| ..+.++.++      ..      .|++++|||||+++|+...+.+++++++
T Consensus        31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            57999999 444444332      22      3799999999999999999999998763

>KOG0064|consensus

Probab=99.02  E-value=3.1e-10  Score=84.59  Aligned_cols=62  Identities=23%  Similarity=0.318  Sum_probs=55.9

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      -||||+|||+++||.+-++|++.+|||-|++..+.....+++..++    .|.+.+-+||.+..-+
T Consensus       612 ~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~gi~llsithrpslwk  673 (728)
T KOG0064|consen  612 VLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----AGISLLSITHRPSLWK  673 (728)
T ss_pred             hccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----cCceEEEeecCccHHH
Confidence            4999999999999999999999999999999999999998876654    4899999999987654

>KOG0063|consensus

Probab=99.00  E-value=8.3e-10  Score=80.79  Aligned_cols=68  Identities=16%  Similarity=0.280  Sum_probs=61.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      +.+||||+-||.++|.+.+++.+++++|||.+-||.+.+-+-...++.+..- ..=||+|.||+.....
T Consensus       211 ~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p-~~YiIVVEHDLsVLDy  278 (592)
T KOG0063|consen  211 VEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINP-DRYIIVVEHDLSVLDY  278 (592)
T ss_pred             hhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCC-CCeEEEEEeechHHHh
Confidence            4579999999999999999999999999999999999999998889988654 6789999999987755

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.96  E-value=1.3e-09  Score=71.43  Aligned_cols=43  Identities=23%  Similarity=0.381  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHH
Q psy5634           9 QQRRVSFAVALMHDPELLILDEPT-----VGVDPLLRQSIWNHLVQIT   51 (79)
Q Consensus         9 ~kqrv~laral~~~p~~lllDEP~-----~glD~~~~~~i~~~l~~~~   51 (79)
                      +++++.||++++.+|+++++||||     +|||+..++.+.+.+.+++
T Consensus       157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~  204 (215)
T PTZ00132        157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA  204 (215)
T ss_pred             HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence            889999999999999999999999     9999999999999999875

>KOG0065|consensus

Probab=98.94  E-value=5.2e-10  Score=89.11  Aligned_cols=76  Identities=25%  Similarity=0.257  Sum_probs=65.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH--HHhhcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE--ARQAHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~--~~~~d~i~~   76 (79)
                      +++..|||||+||+++-+++.+|+++.+||+|.|||..+.-++.+.++.+++..+.|++++-+....  ..-.|+++-
T Consensus       257 ~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~l  334 (1391)
T KOG0065|consen  257 MVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVIL  334 (1391)
T ss_pred             ccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheee
Confidence            4578999999999999999999999999999999999999999999999988778899998887532  233666543

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.87  E-value=1.6e-08  Score=67.64  Aligned_cols=61  Identities=20%  Similarity=0.161  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHHHh
Q psy5634          10 QRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH-LVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus        10 kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~-l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      -++++-....+.+|.++|+|||++|+++.....+... ++.+.+..+.++|++||+++.+..
T Consensus        97 ~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~  158 (218)
T cd03286          97 LSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE  158 (218)
T ss_pred             HHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence            4444444445579999999999999999999998887 455543338999999999988765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF13175 AAA_15: AAA ATPase domain

Probab=98.79  E-value=2.9e-08  Score=69.60  Aligned_cols=66  Identities=23%  Similarity=0.385  Sum_probs=55.0

Q ss_pred             CCCCCHHHHHHHHHHHHHh------cC-CC---EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634           2 EISSRGGQQRRVSFAVALM------HD-PE---LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~------~~-p~---~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      ...+|.|.++.+.++..+.      .+ +.   ++++|||-+.|.|..++.+++.|.++....+..||++||.+.+
T Consensus       339 l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i  414 (415)
T PF13175_consen  339 LSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI  414 (415)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence            3578999998888776542      12 22   9999999999999999999999999987668899999999764

>PRK13695 putative NTPase; Provisional

Probab=98.76  E-value=2.8e-08  Score=63.49  Aligned_cols=68  Identities=15%  Similarity=0.173  Sum_probs=50.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDE--PTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDE--P~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      .+|++++.+..+++..+.+|+++++||  |+.++++..    .+.+.+.. +.|.++|+++|+......+|++..
T Consensus        78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~  147 (174)
T PRK13695         78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKS  147 (174)
T ss_pred             ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHH-hCCCeEEEEECchhhHHHHHHHhc
Confidence            589999999999999999999999999  555555544    44455544 347899999998654444565543

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.72  E-value=1.1e-07  Score=63.85  Aligned_cols=62  Identities=21%  Similarity=0.230  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           9 QQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI-WNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         9 ~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i-~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      +-++++-+.--+.+|.++|+|||++|.|+.....+ ..++..+.+..+.++|++||+.+....
T Consensus        97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~  159 (222)
T cd03287          97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI  159 (222)
T ss_pred             HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence            34444444445678999999999999998777774 456666654447899999999987653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.71  E-value=4e-08  Score=78.07  Aligned_cols=72  Identities=15%  Similarity=0.239  Sum_probs=62.3

Q ss_pred             CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           2 EISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      ...||||||-.++||..++    ...++++|||--++||..+...+.++|.+..  .+.-+|+|||.......+|+.+
T Consensus      1064 l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s--~~sQFIvIThr~~~m~~ad~l~ 1139 (1163)
T COG1196        1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS--KETQFIVITHRKGTMEAADRLV 1139 (1163)
T ss_pred             hhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC--cCCeEEEEEcChHHHHHHHHHe
Confidence            3569999999999988665    4569999999999999999999999999985  3688999999998887777643

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=98.54  E-value=4.6e-07  Score=68.45  Aligned_cols=63  Identities=14%  Similarity=0.171  Sum_probs=46.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecCHHHHH
Q psy5634           2 EISSRGGQQRRVSFAVALMH------DPELLILDEPTVGVDPLLRQSIWN-HLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~------~p~~lllDEP~~glD~~~~~~i~~-~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      +..|||||+|-+++|..++.      ..++ ++||||+.||+..+..+.. .+...    +.-||+.|||-++-.
T Consensus       549 ~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~----~~QvIils~d~e~~~  618 (650)
T TIGR03185       549 KERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA----SHQVLLLSTDEEVDE  618 (650)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc----CCeEEEEechHhhCH
Confidence            45799999999876654432      3566 4699999999999999875 44432    457888889876543

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0964|consensus

Probab=98.53  E-value=8.1e-08  Score=75.07  Aligned_cols=71  Identities=20%  Similarity=0.257  Sum_probs=61.4

Q ss_pred             CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           3 ISSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      .+||||||--||||..++.    +++++||||--++||++.+..+..+++++...  .-+|.+|-.++.+..+|+++
T Consensus      1096 ~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~--aQFI~TTFRpEll~vAdKfy 1170 (1200)
T KOG0964|consen 1096 EQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS--AQFITTTFRPELLSVADKFY 1170 (1200)
T ss_pred             HHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc--cceEeecccHHHHHHHHhhh
Confidence            4799999999999987764    35999999999999999999999999999753  67888888888888787654

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.47  E-value=6.5e-07  Score=69.59  Aligned_cols=55  Identities=29%  Similarity=0.431  Sum_probs=48.1

Q ss_pred             HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634          15 FAVALMHDPELLILDEPTVGV-DPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus        15 laral~~~p~~lllDEP~~gl-D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      +.+++..+|.++++|||+.+| |+..++.+.+.++...+ .|.+++++||+++.+..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~d~~~  735 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLSDAAN  735 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhh
Confidence            567888999999999999999 79999999999988754 47899999999998754

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.46  E-value=7.5e-07  Score=69.00  Aligned_cols=51  Identities=33%  Similarity=0.517  Sum_probs=44.6

Q ss_pred             HHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634          18 ALMHDPELLILDEPTVGV-DPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus        18 al~~~p~~lllDEP~~gl-D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      .+..+|.++++|||+.+| |+...+.+.+.++...+ .|.+++++||+++.+.
T Consensus       648 ~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d~~  699 (818)
T PRK13830        648 RLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISDAE  699 (818)
T ss_pred             hcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHh
Confidence            346899999999999999 69999999999998754 4789999999998874

>PF13166 AAA_13: AAA domain

Probab=98.41  E-value=2.7e-06  Score=64.27  Aligned_cols=68  Identities=24%  Similarity=0.342  Sum_probs=57.5

Q ss_pred             CCCCHHHHHHHHHHHHHh--c-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEecCHHHHHh
Q psy5634           3 ISSRGGQQRRVSFAVALM--H-------DPELLILDEPTVGVDPLLRQSIWNHLVQITK-DGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~--~-------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~-~~g~tvi~~tH~~~~~~~   70 (79)
                      ..||-|+|.-+++|-.|+  .       +..++++|.|-+.||...+..+...|.+... ....-||+-|||..+...
T Consensus       499 ~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~~  576 (712)
T PF13166_consen  499 KILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFKE  576 (712)
T ss_pred             CccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHHH
Confidence            579999999999987553  2       5689999999999999999999999998851 225789999999988754

>COG4637 Predicted ATPase [General function prediction only]

Probab=98.37  E-value=2.5e-06  Score=60.58  Aligned_cols=67  Identities=27%  Similarity=0.393  Sum_probs=59.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           2 EISSRGGQQRRVSFAVALMHD--PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~--p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      ...||-|+-+-++++-+|...  |.++++|||-.+|-|..-..+...+.+.++. + -||++||...++..
T Consensus       268 ~~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~-s-Qv~VsTHS~rLl~~  336 (373)
T COG4637         268 DRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKR-S-QVIVSTHSPRLLNA  336 (373)
T ss_pred             hhhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhcc-c-eEEEEeCCHHHHhh
Confidence            357999999999999999864  8999999999999999999999999887654 3 89999999988754

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.34  E-value=2.9e-06  Score=56.79  Aligned_cols=63  Identities=21%  Similarity=0.278  Sum_probs=50.7

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634           5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus         5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      .|.|+-=.--+.+.+ ++.-+++||||-++|.|.-+-++..++.++.+. |.-+||+||.+-...
T Consensus       130 ~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlA  192 (233)
T COG3910         130 MSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLA  192 (233)
T ss_pred             hccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhhee
Confidence            577775544444443 577899999999999999999999999999765 789999999986543

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.28  E-value=6.6e-07  Score=59.84  Aligned_cols=48  Identities=19%  Similarity=0.340  Sum_probs=40.8

Q ss_pred             HHhcCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634          18 ALMHDPELLILDEPTV------GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus        18 al~~~p~~lllDEP~~------glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~   66 (79)
                      +...+|+++++| |++      ..|+.....+++.+.+++++.|.++++++|...
T Consensus       107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K  160 (239)
T cd01125         107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK  160 (239)
T ss_pred             HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence            345799999999 765      479999999999999988777999999999864

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.27  E-value=4.3e-06  Score=56.14  Aligned_cols=61  Identities=16%  Similarity=0.267  Sum_probs=41.8

Q ss_pred             CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634           5 SRGGQQRRVSFAVALM----HDPELLILDEPTVGV----DPLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus         5 lS~G~kqrv~laral~----~~p~~lllDEP~~gl----D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      +|+++.++-.+.+.+-    .+|+++++|||++++    |+...+.+.+.++.+.+. |.|+++ ||+...
T Consensus        96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tvi~-t~~~~~  164 (230)
T PRK08533         96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL-NKVIIL-TANPKE  164 (230)
T ss_pred             ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC-CCEEEE-Eecccc
Confidence            4555544444443333    369999999999999    888888899988887554 666655 555443

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.24  E-value=5.3e-07  Score=61.51  Aligned_cols=69  Identities=19%  Similarity=0.163  Sum_probs=53.8

Q ss_pred             CCCCCHHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCCcEEEEEecCHHHHHhhc
Q psy5634           2 EISSRGGQ--------QRRVSFAVALMHDPELLILDEPTVGVDPLLRQS-IWNHLVQITKDGNKTVIITTHYIEEARQAH   72 (79)
Q Consensus         2 ~~~lS~G~--------kqrv~laral~~~p~~lllDEP~~glD~~~~~~-i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d   72 (79)
                      +..+|||+        +|++++||++..++.+.+|  ||+.+|+..... +.  +.+. +..+.|.|+.||.+.....++
T Consensus       127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~-~~~~~~~ivls~~la~~~~~p  201 (249)
T cd01128         127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEF-KGTGNMELVLDRRLAERRIFP  201 (249)
T ss_pred             CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHH-hcCCCcEEEEchHHhhCCCCC
Confidence            45689999        9999999999899999999  999999544332 33  3333 334689999999998877766


Q ss_pred             cee
Q psy5634          73 TVI   75 (79)
Q Consensus        73 ~i~   75 (79)
                      .|.
T Consensus       202 aI~  204 (249)
T cd01128         202 AID  204 (249)
T ss_pred             eEE
Confidence            653

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.24  E-value=9.1e-06  Score=60.93  Aligned_cols=70  Identities=26%  Similarity=0.393  Sum_probs=59.6

Q ss_pred             CCCHHHHHHHHHHHH--HhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           4 SSRGGQQRRVSFAVA--LMHD--PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         4 ~lS~G~kqrv~lara--l~~~--p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      .-|||+-.|+.||.-  ++..  .+.+||||--+|+.=.....|-+.|+++.+  +.-|++|||-+..+..+|..+
T Consensus       431 vASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~--~~QVl~VTHlPQVAa~ad~H~  504 (557)
T COG0497         431 VASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSE--HHQVLCVTHLPQVAAMADTHF  504 (557)
T ss_pred             hcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhc--CceEEEEecHHHHHhhhcceE
Confidence            469999999999873  3333  569999999999999999999999999864  578999999999998888643

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.15  E-value=1.7e-05  Score=52.76  Aligned_cols=61  Identities=13%  Similarity=0.179  Sum_probs=46.2

Q ss_pred             CCHHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634           5 SRGGQQRRVSFAVALMH--DPELLILDEPTVG---VDPLLRQSIWNHLVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus         5 lS~G~kqrv~laral~~--~p~~lllDEP~~g---lD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~   66 (79)
                      .|.++++.+..+...+.  +|+++++|||++.   .|......++..+..+.+ .|.|+++++|...
T Consensus       101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~  166 (234)
T PRK06067        101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYA  166 (234)
T ss_pred             CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCc
Confidence            46788899999988887  9999999999954   555555555555655544 4789999999754

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.12  E-value=1.8e-05  Score=54.67  Aligned_cols=45  Identities=16%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634          15 FAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus        15 laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      ...+.+.+|+++++|||++      .+.+..++... + .|.++|++||+...
T Consensus       187 ~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~-~G~~vI~ttH~~~~  231 (270)
T TIGR02858       187 MMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-H-AGVSIIATAHGRDV  231 (270)
T ss_pred             HHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-h-CCCEEEEEechhHH
Confidence            3444557999999999973      23344444443 3 48999999998665

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.10  E-value=2.6e-05  Score=47.69  Aligned_cols=61  Identities=23%  Similarity=0.216  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634           6 RGGQQRRVSFAVALMHDPELLILDEPTV----------GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus         6 S~G~kqrv~laral~~~p~~lllDEP~~----------glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      +.+..++...+++...+|+++++|||++          +.+....+.+.++. +..++.+.|+|+++|....
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~~vv~~~~~~~~  139 (165)
T cd01120          69 AAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELL-ERARKGGVTVIFTLQVPSG  139 (165)
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHH-HHHhcCCceEEEEEecCCc
Confidence            3455566778889999999999999994          45555556665554 4446668999999997643

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>KOG0962|consensus

Probab=98.06  E-value=1.1e-05  Score=64.95  Aligned_cols=68  Identities=26%  Similarity=0.301  Sum_probs=55.4

Q ss_pred             CCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH----hcCCcEEEEEecCHHHHHh
Q psy5634           3 ISSRGGQQR------RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQIT----KDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         3 ~~lS~G~kq------rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~----~~~g~tvi~~tH~~~~~~~   70 (79)
                      +--|.|||-      |+|+|-.++.++.+|-|||||++||..+...+...+.++.    +..+.-.|++|||-.++..
T Consensus      1182 GRcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~ 1259 (1294)
T KOG0962|consen 1182 GRCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQL 1259 (1294)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHH
Confidence            345788875      6777888999999999999999999999988777766654    2346789999999998754

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.06  E-value=2.7e-05  Score=60.80  Aligned_cols=67  Identities=21%  Similarity=0.200  Sum_probs=47.2

Q ss_pred             CCCHHHHHHHHHHHHHhc--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhc
Q psy5634           4 SSRGGQQRRVSFAVALMH--DPELLILDEP---TVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAH   72 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~--~p~~lllDEP---~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d   72 (79)
                      .+|.-+.....++.+|-.  ++.++|+|||   |+.+|-.  ...+.++..+.+..|.+++++||+.+....++
T Consensus       666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~--aia~aile~l~~~~~~~~l~aTH~~el~~l~~  737 (854)
T PRK05399        666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL--SIAWAVAEYLHDKIGAKTLFATHYHELTELEE  737 (854)
T ss_pred             CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH--HHHHHHHHHHHhcCCceEEEEechHHHHHHhh
Confidence            466667777888777766  8999999999   6666622  33445555555544689999999976654443

>KOG0933|consensus

Probab=98.06  E-value=3e-06  Score=66.69  Aligned_cols=70  Identities=21%  Similarity=0.214  Sum_probs=56.2

Q ss_pred             CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634           3 ISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      ..||||||..|||+..|+    .+++++||||.-++||-.-.+.|-.+|+...  .+.-+|+||=--.....++++
T Consensus      1081 ~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF--~~sQFIVVSLKeGMF~NANvL 1154 (1174)
T KOG0933|consen 1081 SELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--THSQFIVVSLKEGMFNNANVL 1154 (1174)
T ss_pred             HHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhC--CCCeEEEEEchhhccccchhh
Confidence            469999999999877554    4679999999999999999999999988754  367899998655555555543

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=98.02  E-value=1.9e-05  Score=61.09  Aligned_cols=51  Identities=29%  Similarity=0.434  Sum_probs=43.2

Q ss_pred             HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634          18 ALMHDPELLILDEPTVGVD-PLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus        18 al~~~p~~lllDEP~~glD-~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      .+-.+|.++++|||+.+|| +.....+.+.++...+ .|.+++++||+++.+.
T Consensus       631 ~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~  682 (811)
T PRK13873        631 RFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK-KNVSVIFATQSLADID  682 (811)
T ss_pred             HhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHh
Confidence            3456899999999999999 7788888888888754 5789999999998765

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=97.85  E-value=7.7e-05  Score=57.73  Aligned_cols=52  Identities=29%  Similarity=0.434  Sum_probs=44.4

Q ss_pred             HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634          18 ALMHDPELLILDEPTVGVD-PLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus        18 al~~~p~~lllDEP~~glD-~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      .+..+|.++++|||...|| +...+.+.+.++... +.|..++++||+++.+..
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~R-K~~~~~i~~TQ~~~d~~~  690 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLR-KLNTFVIFATQSVEDASK  690 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHh
Confidence            4567899999999999999 888888999888874 457899999999987654

>KOG0996|consensus

Probab=97.83  E-value=1.8e-05  Score=63.10  Aligned_cols=72  Identities=21%  Similarity=0.167  Sum_probs=58.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634           1 MEISSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      ++.+||||+|-.-+||..++.    ..+++++||--++||..+...+.+.+++..+  +.-+|+||=.-+..+-+++.
T Consensus      1192 ~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTk--NAQFIIISLRnnMFELa~rL 1267 (1293)
T KOG0996|consen 1192 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTK--NAQFIIISLRNNMFELANRL 1267 (1293)
T ss_pred             hcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhcc--CCeEEEEEehhhHHHHHhhh
Confidence            367999999999999998875    4599999999999999999999999987543  56788888665555555553

>PF00488 MutS_V: MutS domain V C-terminus

Probab=97.71  E-value=0.00046  Score=46.60  Aligned_cols=67  Identities=21%  Similarity=0.202  Sum_probs=45.7

Q ss_pred             CCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecCHHHHHh
Q psy5634           4 SSRGGQQRRVSFAVAL--MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-GNKTVIITTHYIEEARQ   70 (79)
Q Consensus         4 ~lS~G~kqrv~laral--~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~-~g~tvi~~tH~~~~~~~   70 (79)
                      .+|.=+.-...+...+  +.+..++|+||+..|-++.....+...+.+...+ .+..++++||+.+....
T Consensus       102 ~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~  171 (235)
T PF00488_consen  102 GLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL  171 (235)
T ss_dssp             SSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred             ccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence            3555444444444444  5577899999999999999999877766665544 47889999999876543

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=97.50  E-value=0.00017  Score=50.93  Aligned_cols=42  Identities=14%  Similarity=0.206  Sum_probs=35.8

Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634          26 LILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus        26 lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      +++|||+.+||+..++.+.+.+.+..  .+.++|++||+.+.+.
T Consensus       116 V~iiEp~~~Ld~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll  157 (325)
T PRK08699        116 VILIHPAESMNLQAANSLLKVLEEPP--PQVVFLLVSHAADKVL  157 (325)
T ss_pred             EEEEechhhCCHHHHHHHHHHHHhCc--CCCEEEEEeCChHhCh
Confidence            55789999999999999999998873  3688999999987543

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.48  E-value=0.0004  Score=45.47  Aligned_cols=54  Identities=20%  Similarity=0.300  Sum_probs=39.0

Q ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634          14 SFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus        14 ~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      ++.++|..+|+++++|||.   |+.....+    .+.+. .|..++.++|..+.....++++
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~-~G~~v~~t~Ha~~~~~~~~Rl~  119 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAE-TGHLVMSTLHTNSAAKTIDRII  119 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHH-cCCEEEEEecCCcHHHHHhHHH
Confidence            5778999999999999996   55543333    23333 4788999999887665566654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>KOG0018|consensus

Probab=97.32  E-value=0.00039  Score=55.41  Aligned_cols=68  Identities=16%  Similarity=0.185  Sum_probs=56.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634           3 ISSRGGQQRRVSFAVALMHD----PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~----p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      .+||||+|--.+||..++-+    +++++|||.-++||..+..++...|+    ..+.-+|++|=-..+...+|-.
T Consensus      1050 ~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr----~~~~Q~IvISLK~~~y~kadaL 1121 (1141)
T KOG0018|consen 1050 DNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR----SSNFQFIVISLKEEFYQKADAL 1121 (1141)
T ss_pred             hhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh----cCCceEEEEeccHHHhhhhhce
Confidence            47999999999999888754    69999999999999999999998887    2356788888776676666654

>PF13514 AAA_27: AAA domain

Probab=97.18  E-value=0.0015  Score=52.24  Aligned_cols=66  Identities=20%  Similarity=0.195  Sum_probs=51.1

Q ss_pred             CCCCCHHHHHHHH------HHHHH-hcCCCE-EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634           2 EISSRGGQQRRVS------FAVAL-MHDPEL-LILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus         2 ~~~lS~G~kqrv~------laral-~~~p~~-lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      +..||.|.+=.+.      ++..+ -.++++ +|+|+||-+.|..-...++++|.++.++  .-||+-||+...+.
T Consensus      1023 ~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~--~QVI~FTch~~l~~ 1096 (1111)
T PF13514_consen 1023 VEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRR--RQVIYFTCHEHLVE 1096 (1111)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccC--CeEEEEeccHHHHH
Confidence            3469999976554      44455 345566 8999999999999999999999998653  46888888877665

>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.18  E-value=0.0016  Score=49.55  Aligned_cols=65  Identities=20%  Similarity=0.294  Sum_probs=55.0

Q ss_pred             CCCHHHHHHHHHHHHHhc---CC-----CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634           4 SSRGGQQRRVSFAVALMH---DP-----ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~---~p-----~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      .||-|++.-++++-.|+.   +|     +++++|.|.+.+|..-....+..++..+. .++-||+-|||-.+++
T Consensus       529 ~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t-~~kQviVLtHntYF~r  601 (758)
T COG4694         529 TLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKT-NIKQVIVLTHNTYFYR  601 (758)
T ss_pred             cccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHh-CceEEEEEeccceehH
Confidence            599999999998877654   44     57899999999999999999999998865 4899999999976654

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=97.15  E-value=0.0037  Score=49.12  Aligned_cols=66  Identities=15%  Similarity=0.122  Sum_probs=45.7

Q ss_pred             CCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEecCHHHHHh
Q psy5634           5 SRGGQQRRVSFAVAL--MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-GNKTVIITTHYIEEARQ   70 (79)
Q Consensus         5 lS~G~kqrv~laral--~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~-~g~tvi~~tH~~~~~~~   70 (79)
                      +|-=+.....++..|  +.++.++|+||+..|.++.....+...+.+...+ .|..++++||..+....
T Consensus       652 ~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l  720 (840)
T TIGR01070       652 RSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTAL  720 (840)
T ss_pred             cchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHH
Confidence            344444444444444  4678999999999999988888865555444333 57889999999876543

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=97.13  E-value=0.00094  Score=49.03  Aligned_cols=68  Identities=16%  Similarity=0.117  Sum_probs=53.6

Q ss_pred             CCCCCHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhc
Q psy5634           2 EISSRGGQQRRVSFAVALM-------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAH   72 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~-------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d   72 (79)
                      ..+.|.|+|+|++.+.+.+       .++-++++|+||+..|+.  +++...+.+... .|.+..+.||.....+++.
T Consensus       219 tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l~~L~ERag  293 (432)
T PRK06793        219 TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYMKKLLERSG  293 (432)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccchhHHHHhc
Confidence            3578999999999998877       789999999999999986  566555555533 4788888888766666654

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.96  E-value=0.021  Score=33.04  Aligned_cols=61  Identities=33%  Similarity=0.375  Sum_probs=45.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-----HHHHHHhcCCcEEEEEecC
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWN-----HLVQITKDGNKTVIITTHY   64 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~-----~l~~~~~~~g~tvi~~tH~   64 (79)
                      ..++++..+..+.++-..+|.++++||+..-.+.........     .........+..+|+++|.
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            356677888888888888889999999999999888776553     1222233456888888884

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.93  E-value=0.00017  Score=53.10  Aligned_cols=53  Identities=25%  Similarity=0.396  Sum_probs=35.6

Q ss_pred             CCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634           4 SSRGGQQRRVSFA--VALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus         4 ~lS~G~kqrv~la--ral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      .+|+|++||+.|+  .++...|+..          ...++.+++++..+. +.|.|+|+++|+.+.
T Consensus       115 ~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~-~~g~TvLLtsh~~~~  169 (484)
T TIGR02655       115 AIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLK-QIGVTTVMTTERIEE  169 (484)
T ss_pred             HHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHH-HCCCEEEEEecCccc
Confidence            4566666666666  3444443332          456778888887764 458999999998764

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.77  E-value=0.0037  Score=43.58  Aligned_cols=55  Identities=16%  Similarity=0.217  Sum_probs=38.6

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634          12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus        12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      .-.+..+|-.+|+++++|||.+       .+.+..+.... .++.+++.++|..+.....+++
T Consensus       208 ~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~-~g~~~~i~T~Ha~~~~~~~~Rl  262 (308)
T TIGR02788       208 KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN-TGHPGSITTLHAGSPEEAFEQL  262 (308)
T ss_pred             HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh-cCCCeEEEEEeCCCHHHHHHHH
Confidence            3456778999999999999996       34456666553 4345679999988755445554

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]

Probab=96.64  E-value=0.0052  Score=44.33  Aligned_cols=61  Identities=23%  Similarity=0.359  Sum_probs=47.3

Q ss_pred             CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634           4 SSRGGQQRRVSFAVALM---------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus         4 ~lS~G~kqrv~laral~---------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      -.|-||++-+.++.-|+         ..+++++|||-++-||+.-+..+++. .    +.+.-+++++-+.+...
T Consensus       275 ~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~----~~~~Q~fvT~t~~~~~~  344 (363)
T COG1195         275 FASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-I----ELGVQVFVTTTDLEDID  344 (363)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-c----ccCCeEEEEccCHHHhh
Confidence            47999999999887665         47899999999999999999988775 2    22455667666665544

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.62  E-value=0.005  Score=43.55  Aligned_cols=54  Identities=19%  Similarity=0.229  Sum_probs=39.0

Q ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634          13 VSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus        13 v~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      -++.++|-.+|+++++||+.   |+.+....++    .+ ..|.+++.+.|-.+.....+++
T Consensus       186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa-~tGh~v~~T~Ha~~~~~~~~Rl  239 (343)
T TIGR01420       186 NALRAALREDPDVILIGEMR---DLETVELALT----AA-ETGHLVFGTLHTNSAAQTIERI  239 (343)
T ss_pred             HHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HH-HcCCcEEEEEcCCCHHHHHHHH
Confidence            35778899999999999996   7776654433    22 3488899999986655444554

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR00152 dephospho-CoA kinase

Probab=96.57  E-value=0.00075  Score=43.53  Aligned_cols=66  Identities=24%  Similarity=0.303  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH--HH-hhccee
Q psy5634           7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE--AR-QAHTVI   75 (79)
Q Consensus         7 ~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~--~~-~~d~i~   75 (79)
                      .|+-.|..|+.++..+|+.+..+|  +.+||...+.+.+.+.+.. +.|.+|++.+|.+.+  .. .+|.++
T Consensus        60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~-~~~~~vvi~~pll~e~~~~~~~D~vv  128 (188)
T TIGR00152        60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQ-SKLAYVLLDVPLLFENKLRSLCDRVI  128 (188)
T ss_pred             CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhh-cCCCEEEEEchHhhhCCcHHhCCEEE
Confidence            477889999999999999988777  8899999999999888764 346789999998865  22 366654

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.32  E-value=0.0034  Score=51.91  Aligned_cols=56  Identities=18%  Similarity=0.338  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------c--------CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634           2 EISSRGGQQRRVSFAVALM--------H--------DP-ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT   62 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~--------~--------~p-~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t   62 (79)
                      .+.||||||..+.+...++        .        -| ++++|||. +++|..+...+++.+..+    |.-+||+|
T Consensus      1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~----~~q~i~~t 1435 (1486)
T PRK04863       1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERL----DMQLLIAA 1435 (1486)
T ss_pred             CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHc----CCcEEEec
Confidence            4679999999888776665        1        12 45699999 999999999998887643    55566655

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=96.26  E-value=0.011  Score=43.26  Aligned_cols=49  Identities=8%  Similarity=0.308  Sum_probs=36.0

Q ss_pred             cCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHhcCCcEEEEEe-cCHHHHHh
Q psy5634          21 HDPELLILDEPTVGVDPL-LRQSIWNHLVQITKDGNKTVIITT-HYIEEARQ   70 (79)
Q Consensus        21 ~~p~~lllDEP~~glD~~-~~~~i~~~l~~~~~~~g~tvi~~t-H~~~~~~~   70 (79)
                      .+|++|++|||...++.. ..++++..+..+.+. |..+|++| |++.....
T Consensus       193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~-~k~iIitsd~~p~~l~~  243 (440)
T PRK14088        193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS-GKQIVICSDREPQKLSE  243 (440)
T ss_pred             hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc-CCeEEEECCCCHHHHHH
Confidence            379999999999888765 446788888777554 56677766 77766543

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.25  E-value=0.017  Score=45.42  Aligned_cols=58  Identities=21%  Similarity=0.301  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHHH---HHHH----hc----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634           3 ISSRGGQQRRVSF---AVAL----MH----DP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY   64 (79)
Q Consensus         3 ~~lS~G~kqrv~l---aral----~~----~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~   64 (79)
                      ..+|||||++++.   |.+|    +.    .|  ..+||||.|+--|+.....++..+.++    |.-.+++|-.
T Consensus       989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~f----glh~v~iTPl 1059 (1104)
T COG4913         989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREF----GLHAVFITPL 1059 (1104)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHc----CceEEEechH
Confidence            3689999999864   3333    32    22  479999999999999999999888765    6778888854

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=96.03  E-value=0.019  Score=42.32  Aligned_cols=45  Identities=27%  Similarity=0.281  Sum_probs=35.6

Q ss_pred             CC--CCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEecCHHHHHhhccee
Q psy5634          30 EP--TVGVDPLLRQSIWNHLVQITK-DGNK-----TVIITTHYIEEARQAHTVI   75 (79)
Q Consensus        30 EP--~~glD~~~~~~i~~~l~~~~~-~~g~-----tvi~~tH~~~~~~~~d~i~   75 (79)
                      ||  ++|+||.....+.+++.+..+ +.|.     ||++.+||+++ .-+|++.
T Consensus       273 e~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~  325 (438)
T PRK07721        273 EPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVR  325 (438)
T ss_pred             CCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEE
Confidence            76  799999999999999998753 3474     99999999985 3356543

>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]

Probab=95.64  E-value=0.018  Score=43.90  Aligned_cols=47  Identities=28%  Similarity=0.505  Sum_probs=40.1

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhh
Q psy5634          23 PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQA   71 (79)
Q Consensus        23 p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~   71 (79)
                      |.++|.+||-+.|-|..+..+++.+..+.  .+.-+|++||...++..+
T Consensus       302 ~~ILLiEEPEahLHPq~q~~l~~ll~~l~--~~~Q~IvTThS~~~~s~~  348 (581)
T COG3593         302 PNILLIEEPEAHLHPQLQAVLWDLLNNLP--LGLQRIVTTHSPHLLSLA  348 (581)
T ss_pred             cceEEEeCchhhcCHHHHHHHHHHHhcCC--cceEEEEEcCCccccccc
Confidence            44999999999999999998888887764  468999999999887653

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.61  E-value=0.057  Score=40.00  Aligned_cols=72  Identities=18%  Similarity=0.213  Sum_probs=52.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH---------------HHHHHHHHhcCCcEEEEEecCHH-H
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI---------------WNHLVQITKDGNKTVIITTHYIE-E   67 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i---------------~~~l~~~~~~~g~tvi~~tH~~~-~   67 (79)
                      +=||-.-|-..|..||-.++++||+||=|++-..-.+...               .+.++++.++.|.+.|+|.=-.. .
T Consensus       322 ~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy  401 (448)
T PF09818_consen  322 NASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDY  401 (448)
T ss_pred             CCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhh
Confidence            3488889999999999999999999999999876654333               33345555666876666665444 4


Q ss_pred             HHhhccee
Q psy5634          68 ARQAHTVI   75 (79)
Q Consensus        68 ~~~~d~i~   75 (79)
                      ...+|+++
T Consensus       402 ~~vAD~Vi  409 (448)
T PF09818_consen  402 FDVADRVI  409 (448)
T ss_pred             HhhCCEEE
Confidence            45588865

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>PRK06893 DNA replication initiation factor; Validated

Probab=95.57  E-value=0.04  Score=36.77  Aligned_cols=45  Identities=16%  Similarity=0.310  Sum_probs=32.0

Q ss_pred             hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634          20 MHDPELLILDEPTVGV-DPLLRQSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus        20 ~~~p~~lllDEP~~gl-D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      ..+++++++||+.... +......++.++.+..+ .|.+++++|++.
T Consensus        89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~-~~~~illits~~  134 (229)
T PRK06893         89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE-QGKTLLLISADC  134 (229)
T ss_pred             cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH-cCCcEEEEeCCC
Confidence            3578999999998754 56666678888877644 466776666553

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=95.49  E-value=0.07  Score=31.20  Aligned_cols=54  Identities=22%  Similarity=0.201  Sum_probs=38.8

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEecCHH
Q psy5634          12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITK----DGNKTVIITTHYIE   66 (79)
Q Consensus        12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~----~~g~tvi~~tH~~~   66 (79)
                      ..........++.++++||.-.. ++.....+.+.+.....    ..+..+|+++++..
T Consensus        74 ~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          74 RLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             hHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            34455667778999999998665 55666777777777643    24788999988654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG1106 Predicted ATPases [General function prediction only]

Probab=95.35  E-value=0.088  Score=38.17  Aligned_cols=66  Identities=26%  Similarity=0.325  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634           4 SSRGGQQRRVSFAVALMH-DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~-~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      ..|-|-++...+.-++.. +-.++++||+-++|-|.....+.+.+.+-.......++++||+.....
T Consensus       251 ~~~~G~kk~~~i~~~l~~~~~k~l~iDEie~~lHp~lm~~~l~~~~~~~~~~niq~~~TTH~~e~id  317 (371)
T COG1106         251 EEGEGFKKALIIVPLLSDLNDKVLLIDEIENGLHPSLMILILETLEDKVKNNNIQVFLTTHSTEFID  317 (371)
T ss_pred             eecchHHHHHHHHhhhhhcCCceEEeehhhhccCHHHHHHHHHHHHhhcccceEEEEeecccHHHHH
Confidence            457788888877666554 448999999999999999999999998876655688999999987654

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=95.29  E-value=0.039  Score=37.14  Aligned_cols=55  Identities=13%  Similarity=0.166  Sum_probs=36.7

Q ss_pred             HHHHHHHHHh--cCCCEEEEeCCCCCCCH-------H-HHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634          11 RRVSFAVALM--HDPELLILDEPTVGVDP-------L-LRQSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus        11 qrv~laral~--~~p~~lllDEP~~glD~-------~-~~~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      ..+..++.++  .+|+++++|..+.-.+.       . ....+...|+.++++.+.|+++++|-.
T Consensus       127 ~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~  191 (271)
T cd01122         127 SVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLR  191 (271)
T ss_pred             HHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence            3344444444  47999999986543322       1 234566677788788899999999854

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=95.28  E-value=0.13  Score=37.39  Aligned_cols=55  Identities=24%  Similarity=0.404  Sum_probs=38.8

Q ss_pred             HHHHHHhcCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHH---hcCCcEEEEEecCHHHH
Q psy5634          14 SFAVALMHDPELLILDE----------PTVGVDPLLRQSIWNHLVQIT---KDGNKTVIITTHYIEEA   68 (79)
Q Consensus        14 ~laral~~~p~~lllDE----------P~~glD~~~~~~i~~~l~~~~---~~~g~tvi~~tH~~~~~   68 (79)
                      .+..|....|.++++||          +.+|.|......+.+++..+-   ...+..+|++||.++.+
T Consensus       230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L  297 (398)
T PTZ00454        230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL  297 (398)
T ss_pred             HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence            34456677899999999          456677777777777666542   22367899999987654

>KOG0250|consensus

Probab=95.27  E-value=0.014  Score=46.85  Aligned_cols=73  Identities=21%  Similarity=0.226  Sum_probs=59.0

Q ss_pred             CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEecCHHHHHhhcce
Q psy5634           2 EISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGN-KTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g-~tvi~~tH~~~~~~~~d~i   74 (79)
                      ...||||+|.-+.++..|.    ...++..|||=---+|..++...+++|.+.+.+.+ -.|+++-|++..+...+.|
T Consensus       987 ~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~~~~~Q~IfiTPqdi~~l~~~~~i 1064 (1074)
T KOG0250|consen  987 TRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDFAKKKGRQFIFITPQDISKLNSDDGI 1064 (1074)
T ss_pred             ccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEccccHhhhccccce
Confidence            4679999999888877664    47899999999999999999999999999876554 5677777888777665544

>COG4938 Uncharacterized conserved protein [Function unknown]

Probab=95.14  E-value=0.05  Score=38.80  Aligned_cols=53  Identities=15%  Similarity=0.295  Sum_probs=42.4

Q ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634          15 FAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA   68 (79)
Q Consensus        15 laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~   68 (79)
                      +++....+-.++|..+|-+.|.|..+..+.+++.+.+. .|.-+++-||.-..+
T Consensus       253 L~lli~K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~-~gvqvVveTHSdhii  305 (374)
T COG4938         253 LMLLIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAA-RGVQVVVETHSDHII  305 (374)
T ss_pred             HHeeeecCCcEEEEcCchhhcCchhHHHHHHHHHHHHh-cCcEEEEEechHHHh
Confidence            34434445578889999999999999999999998865 589999999975444

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=95.04  E-value=0.079  Score=34.85  Aligned_cols=43  Identities=14%  Similarity=0.231  Sum_probs=31.9

Q ss_pred             cCCCEEEEeC-----CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634          21 HDPELLILDE-----PTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY   64 (79)
Q Consensus        21 ~~p~~lllDE-----P~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~   64 (79)
                      .+++.+++|-     |+.+.|...++.+.+++..+. +.|.|+++++|.
T Consensus       106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk-~~~~tvll~s~~  153 (224)
T TIGR03880       106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLR-ETGVTTILTSEA  153 (224)
T ss_pred             hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHH-hCCCEEEEEEcc
Confidence            3689999993     344555666777888887774 558999999995

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=94.68  E-value=0.094  Score=33.76  Aligned_cols=61  Identities=21%  Similarity=0.225  Sum_probs=41.8

Q ss_pred             HHHHHHHh--cCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH--HHhhccee
Q psy5634          13 VSFAVALM--HDPELLILDEPTVG--VDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE--ARQAHTVI   75 (79)
Q Consensus        13 v~laral~--~~p~~lllDEP~~g--lD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~--~~~~d~i~   75 (79)
                      ...|+..+  .+.++++|||-...  ++....+.+.+.+.+  +..+..+|++.++...  ...+|.|-
T Consensus        84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~--rp~~~evIlTGr~~p~~l~e~AD~VT  150 (159)
T cd00561          84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA--KPEDLELVLTGRNAPKELIEAADLVT  150 (159)
T ss_pred             HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhCceee
Confidence            34444444  45799999998765  445566778887775  3447899999999753  34477653

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family

Probab=94.09  E-value=0.17  Score=38.97  Aligned_cols=49  Identities=27%  Similarity=0.403  Sum_probs=38.4

Q ss_pred             hcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634          20 MHDPELLILDEPTVGVD-PLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus        20 ~~~p~~lllDEP~~glD-~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      -..|.++++||.-.-++ +...+.+.+.++.. ++.|..++++||++..+.
T Consensus       627 ~~~~~~i~iDEa~~ll~~~~~~~~i~~~~r~~-RK~~~~~~~~TQ~~~d~~  676 (785)
T TIGR00929       627 DGRPFLIIIDEAWQYLGNPVFAAKIRDWLKTL-RKANGIVVLATQSINDAL  676 (785)
T ss_pred             CCCCeEEEEechhhhcCCHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHh
Confidence            45789999999877775 76777777776665 556889999999998764

Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).

>PRK04296 thymidine kinase; Provisional

Probab=93.72  E-value=0.28  Score=31.85  Aligned_cols=39  Identities=15%  Similarity=0.104  Sum_probs=27.3

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634          21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY   64 (79)
Q Consensus        21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~   64 (79)
                      .+++++++||- --++.   +++.+++..+ +..|.+||++.++
T Consensus        77 ~~~dvviIDEa-q~l~~---~~v~~l~~~l-~~~g~~vi~tgl~  115 (190)
T PRK04296         77 EKIDCVLIDEA-QFLDK---EQVVQLAEVL-DDLGIPVICYGLD  115 (190)
T ss_pred             CCCCEEEEEcc-ccCCH---HHHHHHHHHH-HHcCCeEEEEecC
Confidence            37899999998 22443   3355555544 4458999999999

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=93.62  E-value=0.19  Score=31.87  Aligned_cols=51  Identities=20%  Similarity=0.301  Sum_probs=29.2

Q ss_pred             HHHHHh--cCCCEEEEeCCCC----CCCH-HHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634          15 FAVALM--HDPELLILDEPTV----GVDP-LLRQSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus        15 laral~--~~p~~lllDEP~~----glD~-~~~~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      +...+.  .+|+++++|--++    +-+. .....+++.+++++++.|.+|+++.|--
T Consensus       132 l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~  189 (193)
T PF13481_consen  132 LEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHHTN  189 (193)
T ss_dssp             HHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE-
T ss_pred             HHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            344444  3799999994322    2222 2235788888888877799999998853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	79
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		5e-09
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		2e-08
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		3e-08
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		4e-08
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		6e-08
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		8e-08
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		8e-08
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		9e-08
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		1e-06
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		1e-06
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		2e-06
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		2e-06
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		2e-06
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		3e-06
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		3e-06
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		4e-06
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		5e-06
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		6e-06
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		6e-06
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		7e-06
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		1e-05
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		1e-05
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		1e-05
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		1e-05
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		1e-05
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		2e-05
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		2e-05
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		3e-05
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		4e-05
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		5e-05
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		5e-05
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		5e-05
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		7e-05
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		8e-05
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		9e-05
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		1e-04
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		1e-04
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		1e-04
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		1e-04
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		1e-04
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		2e-04
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		2e-04
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-04
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-04
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		2e-04
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-04
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		3e-04
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		3e-04
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		4e-04
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		4e-04
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		4e-04
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		4e-04
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		4e-04
1g29_1	372	Malk Length = 372		4e-04
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		4e-04
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		5e-04
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		5e-04
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		5e-04

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GQ++RV+ A  L+ +P++LILDEPT G+DP+    I   LV++ K+   T+II TH I+
Sbjct: 147 GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RVS A AL  +P++L+ DEPT  +DP L   +   + Q+ ++G KT+++ TH + 
Sbjct: 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG-KTMVVVTHEMG 214
Query: 67  EAR 69
            AR
Sbjct: 215 FAR 217

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL ++P +++ DEPT  +D    + I   L ++ ++  KTV++ TH I 
Sbjct: 148 GGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDIN 207
Query: 67  EARQAHTVI 75
            AR    +I
Sbjct: 208 VARFGERII 216

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL+ +PE+L+LDEP   +D LLR  +   L ++ K+   T +  TH   
Sbjct: 136 GGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA 195
Query: 67  EA 68
           EA
Sbjct: 196 EA 197

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL ++P +++ D+PT  +D    + I   L ++ ++  KTV++ TH I 
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
Query: 67  EARQAHTVI 75
            AR    +I
Sbjct: 208 VARFGERII 216

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 7/73 (9%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG++RRV+ A  ++H+P++LILDEP VG+D   +  +   +V+  K   KTVI+ +H IE
Sbjct: 143 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL-RIVEKWKTLGKTVILISHDIE 201
Query: 67  EARQAHTVIDNYD 79
                 TVI++ D
Sbjct: 202 ------TVINHVD 208

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 7/73 (9%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG++RRV+ A  ++H+P++LILDEP VG+D   +  +   +V+  K   KTVI+ +H IE
Sbjct: 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL-RIVEKWKTLGKTVILISHDIE 199
Query: 67  EARQAHTVIDNYD 79
                 TVI++ D
Sbjct: 200 ------TVINHVD 206

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL ++P +++ D+PT  +D    + I   L ++ ++  KTV++ TH I 
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
Query: 67  EARQAHTVI 75
            AR    +I
Sbjct: 208 VARFGERII 216

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
           GGQ + V    ALM +P+++++DEP  GV P L   I+NH++++   G   +II
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLII 209

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
           GGQ + V    ALM +P+++++DEP  GV P L   I+NH++++   G   +II
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLII 209

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 4   SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           S  GGQ +RV+ A AL  +P++++ DEPT  +DP +   + + + Q+  +G  T+++ TH
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG-MTMVVVTH 217
Query: 64  YIEEARQ 70
            +  AR+
Sbjct: 218 EMGFARE 224

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 4   SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           S  GGQ +RV+ A AL  +P++++ DEPT  +DP +   + + + Q+  +G  T+++ TH
Sbjct: 138 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG-MTMVVVTH 196
Query: 64  YIEEARQ 70
            +  AR+
Sbjct: 197 EMGFARE 203

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+Q+RV+ A AL+ +P++L+LDEP   +DP  +++    L  + K    TV+  TH   
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189
Query: 67  EAR 69
           EAR
Sbjct: 190 EAR 192

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
           GGQ++R+S A AL+  P++LILD+ T  VDP+  + I + L + TK G  T IIT
Sbjct: 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK-GCTTFIIT 535

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
           GGQ + V    ALM +P+++++D+P  GV P L   I+NH++++   G   +II
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLII 209

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL   P++L+ DEP   +D  +R+ +   + Q+  +   T +  TH  E
Sbjct: 148 GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207
Query: 67  EA 68
           EA
Sbjct: 208 EA 209

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 4   SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           S  GGQ++RV+ A AL+ D  +LILDE T  +D    ++I   L ++ K  NKTV++  H
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAH 537
Query: 64  YIEEARQAHTVI 75
            +    QA  ++
Sbjct: 538 RLSTIEQADEIL 549

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+Q+RV+ A AL ++P LL  DEPT  +D    + + +  ++I  +G  ++++ TH  E
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN-EGGTSIVMVTHERE 201
Query: 67  EARQAHTVIDNYD 79
            A   H  ++  D
Sbjct: 202 LAELTHRTLEMKD 214

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQQ+RV+ A AL+ DP LL+LDEP   +D  +R S    + ++      T+++ +H
Sbjct: 143 GGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL  +P++L+ DE T  +DP   +SI   L  I +    T+++ TH ++
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD 202

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+++P++LI DE T  +D      I  ++ +I K   +TVII  H + 
Sbjct: 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLS 199
Query: 67  EARQAHTVI 75
             + A  +I
Sbjct: 200 TVKNADRII 208

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+++P++LI DE T  +D      I  ++ +I K   +TVII  H + 
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLS 205
Query: 67  EARQAHTVI 75
             + A  +I
Sbjct: 206 TVKNADRII 214

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+++P++LI DE T  +D      I  ++ +I K   +TVII  H + 
Sbjct: 144 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLS 201
Query: 67  EARQAHTVI 75
             + A  +I
Sbjct: 202 TVKNADRII 210

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+++P++LI DE T  +D      I  ++ +I K   +TVII  H + 
Sbjct: 144 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLS 201
Query: 67  EARQAHTVI 75
             + A  +I
Sbjct: 202 TVKNADRII 210

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++ V+ A AL+  P LLILD+ T  +D   +  +   L +  +  ++TV++ TH + 
Sbjct: 159 GGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLS 218
Query: 67  EARQAHTVI 75
            A +AH ++
Sbjct: 219 LAERAHHIL 227

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL  +P++L+ D+ T  +DP   +SI   L  I +    T+++ TH ++
Sbjct: 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD 225

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++RV+ A AL  +P++L+ D+ T  +DP   +SI   L  I +    T+++ TH
Sbjct: 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           G QQ+RV+ A AL+ DP LL+LDEP   +D  +R S    + ++      T+++ +H
Sbjct: 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH 199

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A  L  D   L LDEP   +DP  ++ I+  L  +  +G K +I+ TH +E
Sbjct: 143 GGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEG-KGIILVTHELE 201

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 39/66 (59%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+Q+ ++   AL   P+LL  DEP++G+ P+L   ++  + +I ++G   +++  + + 
Sbjct: 142 GGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG 201
Query: 67  EARQAH 72
             + AH
Sbjct: 202 ALKVAH 207

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDP---LLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++R++ A AL+ +P++L+LDE T  +D     L Q   + L+    DG +TV++  H
Sbjct: 517 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM----DG-RTVLVIAH 571
Query: 64  YIEEARQAHTV 74
           ++   + A+ V
Sbjct: 572 HLSTIKNANMV 582

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+ D  +LILDE T  +D    ++I   L ++ K  N+T ++  H + 
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS 540
Query: 67  EARQAHTVI 75
              QA  ++
Sbjct: 541 TIEQADEIV 549

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+ +P++L+LDE T  +D      +   L +  K   +T II  H + 
Sbjct: 557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLS 614
Query: 67  EARQAHTVI 75
             R A  +I
Sbjct: 615 TIRNADLII 623

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL+  P++L+ DEP   +D  LR  +   +  + ++   T +  TH   
Sbjct: 136 GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195
Query: 67  EA 68
           EA
Sbjct: 196 EA 197

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG ++RV  A+AL+ DP +LILDEPT  +D L +  I   L ++ K    T+I  TH I 
Sbjct: 157 GGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIA 216
Query: 67  EARQ 70
            A +
Sbjct: 217 VAAE 220

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+++P++LI DE T  +D      I  ++ +I K   +TVII    + 
Sbjct: 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAARLS 199
Query: 67  EARQAHTVI 75
             + A  +I
Sbjct: 200 TVKNADRII 208

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+++P++LI DE T  +D      I  ++ +I K   +TVII    + 
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAARLS 205
Query: 67  EARQAHTVI 75
             + A  +I
Sbjct: 206 TVKNADRII 214

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
           G  R++  A ALM +P L ILDEPT G+D L  + +   L Q +++G  T+++++H + E
Sbjct: 150 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG-LTILVSSHNMLE 208

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+ D  +LILDE T  +D    ++I   L ++ K  N+T ++  H + 
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS 540
Query: 67  EARQAHTVI 75
              +A  ++
Sbjct: 541 TIEKADEIV 549

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDP---LLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++R++ A AL+ +P++L+LDE T  +D     L Q   + L+    DG +TV++  H
Sbjct: 486 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM----DG-RTVLVIAH 540
Query: 64  YIEEARQAHTV 74
            +   + A+ V
Sbjct: 541 RLSTIKNANMV 551

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           I+  GGQ+ R+S A A+  D +L +LD P   +D L  + I+   V      NKT I+ T
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-CKLMANKTRILVT 186
Query: 63  HYIEEARQAHTVI 75
             +E  ++A  ++
Sbjct: 187 SKMEHLKKADKIL 199

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           I+  GGQ+ R+S A A+  D +L +LD P   +D L  + I+   V      NKT I+ T
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-CKLMANKTRILVT 187
Query: 63  HYIEEARQAHTVI 75
             +E  ++A  ++
Sbjct: 188 SKMEHLKKADKIL 200

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++ V+ A AL+  P LLILD  T  +D   +  +   L +  +  ++TV++ T  + 
Sbjct: 159 GGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218
Query: 67  EARQAHTVI 75
            A +AH ++
Sbjct: 219 LAERAHHIL 227

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+ +P++L+LDE T  +D    +++    +   ++G  T++I  H + 
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDT-ESEAVVQAALDKAREGRTTIVI-AHRLS 586
Query: 67  EARQAHTVIDNYD 79
             R A  VI  +D
Sbjct: 587 TVRNA-DVIAGFD 598

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 4   SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           S  GGQ++ +  A A+  + +L++LDEPT  +D   +  + + L+ + +  N TV+ TTH
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+ +P++L+LDE T  +D    +++    +   ++G  T++I  H + 
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDT-ESEAVVQAALDKAREGRTTIVI-AHRLS 586
Query: 67  EARQAHTVIDNYD 79
             R A  VI  +D
Sbjct: 587 TVRNA-DVIAGFD 598

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++RV+ A A++ +P++L++DEP   +D  LR ++   + ++ +    T I  TH
Sbjct: 145 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++RV+ A A++ +P++L++DEP   +D  LR ++   + ++ +    T I  TH
Sbjct: 144 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++RV+ A AL+  P LL+LDEP   VD   +  +   L  + ++ +  ++  TH + 
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 67  EA 68
           EA
Sbjct: 189 EA 190

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           I+  GGQ+ R+S A A+  D +L +LD P   +D L  + I+   V      NKT I+ T
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-CKLMANKTRILVT 216
Query: 63  HYIEEARQAHTVI 75
             +E  ++A  ++
Sbjct: 217 SKMEHLKKADKIL 229

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           I+  GGQ+ R+S A A+  D +L +LD P   +D L  + I+   V      NKT I+ T
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-CKLMANKTRILVT 216
Query: 63  HYIEEARQAHTVI 75
             +E  ++A  ++
Sbjct: 217 SKMEHLKKADKIL 229

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           I+  GGQ+ R+S A A+  D +L +LD P   +D L  + I+   V      NKT I+ T
Sbjct: 159 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-CKLMANKTRILVT 217
Query: 63  HYIEEARQAHTVI 75
             +E  ++A  ++
Sbjct: 218 SKMEHLKKADKIL 230

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 3   ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT 62
           I+  GGQ+ R+S A A+  D +L +LD P   +D L  + I+   V      NKT I+ T
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-CKLMANKTRILVT 199
Query: 63  HYIEEARQAHTVI 75
             +E  ++A  ++
Sbjct: 200 SKMEHLKKADKIL 212

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+   A++  P++ ++DEP   +D  LR  +   L ++ +    T I  TH   
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201
Query: 67  EA 68
           EA
Sbjct: 202 EA 203

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++R++ A  L+ DP+++I DE T  +D          +  + K  N+T+II  H + 
Sbjct: 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAHRLS 215
Query: 67  EARQAHTVI 75
               A ++I
Sbjct: 216 TISSAESII 224

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 22  DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ 70
           DPEL++LDEP   +D  LR+ I   ++   +   K+ +  +H  EEA Q
Sbjct: 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQ 204

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++RV+    L+ +P + +LDEP   +D  LR  +   + ++ K   +T+I  TH
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++RV+    L+ +P + +LDEP   +D  LR  +   + ++ K   +T+I  TH
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	79
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-28
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	9e-27
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	3e-24
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	1e-17
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	1e-17
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	2e-17
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	8e-15
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-11
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	1e-14
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-13
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-10
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	3e-12
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	6e-12
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-09
1g6h_A	257	High-affinity branched-chain amino acid transport	2e-11
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	7e-11
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-10
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	5e-09
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	1e-10
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-10
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	8e-10
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	1e-09
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	2e-09
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	3e-09
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	5e-09
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	3e-08
1ji0_A	240	ABC transporter; ATP binding protein, structural g	5e-08
1b0u_A	262	Histidine permease; ABC transporter, transport pro	5e-08
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	1e-07
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	1e-07
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	4e-07
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	7e-05
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	2e-06
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	6e-06
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	1e-05
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	2e-05
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-05
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	2e-05
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	2e-05
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-05
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	2e-05
2ghi_A	260	Transport protein; multidrug resistance protein, M	2e-05
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	3e-05
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	4e-05
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	5e-05
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	9e-05
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	2e-04
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	4e-04
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	4e-04
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	6e-04

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 99.9 bits (250), Expect = 2e-28
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
            G  RRV  A  L+ + E+ +LD+P V +D   +  +   +++I K+    +I +   + 
Sbjct: 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195

Query: 67  EA 68
             
Sbjct: 196 YC 197

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 96.8 bits (242), Expect = 9e-27
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
            G  R++  A ALM +P L ILDEPT G+D L  + +   L Q +++G  T+++++H + 
Sbjct: 149 KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG-LTILVSSHNML 207

Query: 67  EARQ 70
           E   
Sbjct: 208 EVEF 211

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 90.7 bits (226), Expect = 3e-24
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNK-TVIITTHYI 65
            G+++RV  A ALM  P++LILDEP  G+D + R+S+ + L  ++       +I  TH+I
Sbjct: 164 TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI 223

Query: 66  EEARQ 70
           EE   
Sbjct: 224 EEITA 228

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 73.4 bits (181), Expect = 1e-17
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
            GQ++RV+ A  L+ +P++LILDEPT G+DP+    I   LV++ K+   T+II TH I+
Sbjct: 146 FGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205

Query: 67  E-ARQAHTVI 75
                   V 
Sbjct: 206 IVPLYCDNVF 215

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 72.8 bits (179), Expect = 1e-17
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
            GQ   V  ++AL   PE++ LDEP   VD   R  I     +  K+  K  I+ TH ++
Sbjct: 131 AGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVI----SRYIKEYGKEGILVTHELD 186

Query: 67  EA 68
             
Sbjct: 187 ML 188

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 72.2 bits (178), Expect = 2e-17
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG++RRV+ A  ++H+P++LILDEP VG+D   +  +   + +  K   KTVI+ +H IE
Sbjct: 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHDIE 199

Query: 67  E-ARQAHTVI 75
                   V+
Sbjct: 200 TVINHVDRVV 209

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 66.2 bits (162), Expect = 8e-15
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+ +++  A  L  + +L +LD+P+  +D   R  +   + ++T++      I  H + 
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS 447

Query: 67  EARQ-AHTVI 75
                A  +I
Sbjct: 448 IHDYIADRII 457

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 56.2 bits (136), Expect = 2e-11
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG  +R+  A +L+ + ++ I D+P+  +D   R ++   + ++ K  NK VI+  H
Sbjct: 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDH 195

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 64.5 bits (158), Expect = 1e-14
 Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 2   EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIIT 61
            +S  GGQ++ +  A A+  + +L++LDEPT  +D   +  + + L+ + +  N TV+ T
Sbjct: 128 SLS--GGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT 185

Query: 62  THYIEEA-RQAHTVI 75
           TH   +    A+  +
Sbjct: 186 THQPNQVVAIANKTL 200

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 62.0 bits (151), Expect = 3e-13
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+ +RV+  +AL    ++ ++DEP+  +D   R      + +      KT  I  H   
Sbjct: 470 GGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529

Query: 67  EARQ-AHTVI 75
            A   A  VI
Sbjct: 530 MATYLADKVI 539

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 53.1 bits (128), Expect = 3e-10
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG+ +R +  ++ + + ++ + DEP+  +D   R +    +  +     K VI   H
Sbjct: 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT-KYVICVEH 279

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 58.3 bits (142), Expect = 3e-12
 Identities = 25/69 (36%), Positives = 42/69 (60%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL ++P +++ D+PT  +D    + I   L ++ ++  KTV++ TH I 
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207

Query: 67  EARQAHTVI 75
            AR    +I
Sbjct: 208 VARFGERII 216

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 58.1 bits (141), Expect = 6e-12
 Identities = 16/57 (28%), Positives = 32/57 (56%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG+ +RV+ A  L+ D ++ +LDEP+  +D   R ++   +  + +   KT ++  H
Sbjct: 474 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 50.8 bits (122), Expect = 2e-09
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG+ +RV+ A AL+        DEP+  +D   R  +   +++   +  K V++  H
Sbjct: 231 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR-VIRRLANEGKAVLVVEH 286

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 56.4 bits (137), Expect = 2e-11
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ + V    ALM +P+++++DEP  GV P L   I+NH++++ K    T +I  H
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL-KAKGITFLIIEH 211

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 54.4 bits (132), Expect = 7e-11
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+Q+RV+ A AL ++P LL  DEPT  +D    + + +  ++I + G  ++++ TH  E
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG-TSIVMVTHERE 201

Query: 67  EARQAHTVI 75
            A   H  +
Sbjct: 202 LAELTHRTL 210

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 54.6 bits (132), Expect = 1e-10
 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+ +RV+ A  L+ D ++ +LDEP+  +D   R ++   +  + +   KT ++  H + 
Sbjct: 404 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 463

Query: 67  EARQ-AHTVI 75
                +  ++
Sbjct: 464 MIDYVSDRLM 473

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 50.0 bits (120), Expect = 5e-09
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG+ +RV+ A AL+ +      DEP+  +D   R +    + +++++G K+V++  H
Sbjct: 161 GGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG-KSVLVVEH 216

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 53.7 bits (130), Expect = 1e-10
 Identities = 21/62 (33%), Positives = 36/62 (58%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+++RV+ A AL+  P LL+LDEP   VD   +  +   L  + ++ +  ++  TH + 
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188

Query: 67  EA 68
           EA
Sbjct: 189 EA 190

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 53.1 bits (127), Expect = 3e-10
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG + +++ A A++ + ++L+LDEPT  +D       W  LV        T I  +H
Sbjct: 551 GGWKMKLALARAVLRNADILLLDEPTNHLD--TVNVAW--LVNYLNTCGITSITISH 603

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 52.3 bits (125), Expect = 8e-10
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI-WNHLVQITKDGNKTVIITTH 63
           GGQ+ ++  A      P L++LDEPT  +D   R S+    L +  K+    VII TH
Sbjct: 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLD---RDSLGA--LSKALKEFEGGVIIITH 956

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 51.4 bits (124), Expect = 1e-09
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+R + A AL  DPEL++LDEP   +D  LR+ I   ++   +   K+ +  +H  E
Sbjct: 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200

Query: 67  EA 68
           EA
Sbjct: 201 EA 202

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 21/57 (36%), Positives = 35/57 (61%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++RV+ A AL  +P++L+ D+ T  +DP   +SI   L  I +    T+++ TH
Sbjct: 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 50.2 bits (121), Expect = 3e-09
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+Q+RV+ A AL+ +P++L+LDEP   +DP  +++    L  + K    TV+  TH   
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189

Query: 67  EA 68
           EA
Sbjct: 190 EA 191

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 50.0 bits (119), Expect = 5e-09
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 7   GGQQRRVSFAV------ALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
           GG++  +  A        L  +  LLILDEPT  +D   R+ +   + +  K     VI+
Sbjct: 251 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP-QVIL 309

Query: 61  TTHYIEEARQAHTVID 76
            +H  E    A  VI 
Sbjct: 310 VSHDEELKDAADHVIR 325

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 47.6 bits (114), Expect = 3e-08
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL   P++L+ DEP   +D  +R+ +   + Q+  +   T +  TH  E
Sbjct: 148 GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207

Query: 67  EA 68
           EA
Sbjct: 208 EA 209

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 46.7 bits (112), Expect = 5e-08
 Identities = 17/48 (35%), Positives = 34/48 (70%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG 54
           GG+Q+ ++   ALM  P+LL++DEP++G+ P+L   ++  + +I ++G
Sbjct: 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 46.8 bits (112), Expect = 5e-08
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RVS A AL  +P++L+ DEPT  +DP L   +   + Q+ ++G KT+++ TH + 
Sbjct: 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG-KTMVVVTHEMG 214

Query: 67  EARQ-AHTVI 75
            AR  +  VI
Sbjct: 215 FARHVSSHVI 224

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 44.7 bits (106), Expect = 1e-07
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 7   GGQQRRVSFA------VALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII 60
           GG++  +  A      + L  +  LLILDEPT  +D   R+ +   + +  K     VI+
Sbjct: 60  GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP-QVIL 118

Query: 61  TTHYIEEARQAHTVID 76
            +H  E    A  VI 
Sbjct: 119 VSHDEELKDAADHVIR 134

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 45.7 bits (109), Expect = 1e-07
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ +RV+ A AL  +P++++ DEPT  +DP +   + + + Q+  +G  T+++ TH + 
Sbjct: 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG-MTMVVVTHEMG 220

Query: 67  EARQ-AHTVI 75
            AR+    V+
Sbjct: 221 FAREVGDRVL 230

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 44.6 bits (106), Expect = 4e-07
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+ +P++L+LDE T  +D      +   L +  +   +T I+  H + 
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIVIAHRLS 586

Query: 67  EARQAHTVI 75
             R A  + 
Sbjct: 587 TVRNADVIA 595

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 38.1 bits (89), Expect = 7e-05
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 10/76 (13%)

Query: 7    GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD---GNKTVIITTH 63
            GGQ++R++ A AL+  P +L+LDE T  +D    +S    +VQ   D     +T I+  H
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDT---ES--EKVVQEALDKAREGRTCIVIAH 1228

Query: 64   YIEEARQAHT--VIDN 77
             +   + A    VI N
Sbjct: 1229 RLSTIQNADLIVVIQN 1244

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 42.2 bits (100), Expect = 2e-06
 Identities = 14/30 (46%), Positives = 22/30 (73%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
           GGQ++R+S A   +++P +LILDE T  +D
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALD 509

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 40.9 bits (97), Expect = 6e-06
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GGQ++R++ A AL+++P++LI DE T  +D      I  ++ +I K   +TVII  H
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAH 202

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 39.8 bits (94), Expect = 1e-05
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 12/78 (15%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQ-----ITKDGNKTVIIT 61
           GGQ++ V+ A AL+  P LLILD  T  +D     +     VQ       +  ++TV++ 
Sbjct: 159 GGQRQAVALARALIRKPRLLILDNATSALDA---GN--QLRVQRLLYESPEWASRTVLLI 213

Query: 62  THYIEEARQAHT--VIDN 77
           T  +  A +AH    +  
Sbjct: 214 TQQLSLAERAHHILFLKE 231

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG+++RV+ A  ++  P +++LDE T  +D    ++I   L ++    N+T I+  H
Sbjct: 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAH 247

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
           GGQ++R++ A AL+ D  +LILDE T  +D
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALD 512

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           G QQ+RV+ A AL+ DP LL+LDEP   +D  +R S    + ++      T+++ +H   
Sbjct: 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202

Query: 67  EA 68
           + 
Sbjct: 203 DI 204

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 7   GGQQRRVSFAVAL-------MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVI 59
           GG+ +RV  A  +           +LL+LDEP   +D   + ++   L  +++ G   ++
Sbjct: 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQG-LAIV 187

Query: 60  ITTHYIEEA-RQAHTVI 75
           +++H +    R AH   
Sbjct: 188 MSSHDLNHTLRHAHRAW 204

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
           GGQ++RV+ A AL+ D  +LILDE T  +D
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALD 512

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 13/74 (17%), Positives = 35/74 (47%), Gaps = 16/74 (21%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVIITT 62
            G ++ +  A +++   ++L+LDEP+  +DP    ++R+++           + TVI+  
Sbjct: 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF------ADCTVILCE 211

Query: 63  HYIEEARQAHTVID 76
                  +   +++
Sbjct: 212 A------RIEAMLE 219

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH 63
           GG+++R++ A  L+ DP+++I DE T  +D          +  + K  N+T+II  H
Sbjct: 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NRTLIIIAH 212

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG---NKTVIITTH 63
           GGQ++RVS A A+  + ++ + D+P   VD  + + I+ ++  I   G   NKT I+ TH
Sbjct: 130 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV--IGPKGMLKNKTRILVTH 187

Query: 64  YIEEARQAHTVI 75
            +    Q   +I
Sbjct: 188 SMSYLPQVDVII 199

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 38.7 bits (91), Expect = 4e-05
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG---NKTVIITTH 63
           GGQ+ R+S A A+  D +L +LD P   +D L  + I+   V         NKT I+ T 
Sbjct: 133 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC----KLMANKTRILVTS 188

Query: 64  YIEEARQAHTVI 75
            +E  ++A  ++
Sbjct: 189 KMEHLKKADKIL 200

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 38.5 bits (90), Expect = 5e-05
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLV-QITKDGNKTVIITTHYI 65
           GGQ+ R+S A A+  D +L +LD P   +D L  + I+   V ++    NKT I+ T  +
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA--NKTRILVTSKM 219

Query: 66  EEARQAHTVI 75
           E  ++A  ++
Sbjct: 220 EHLKKADKIL 229

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 37.5 bits (88), Expect = 9e-05
 Identities = 13/30 (43%), Positives = 23/30 (76%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVD 36
           GGQ++R++ A A + +P++L+LDE T  +D
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLD 171

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 7   GGQQRRVSFAVAL-------MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVI 59
           GG+Q  V+ ++ L        +  E +ILDEPTV +D   R  +     ++       +I
Sbjct: 283 GGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQ--MI 340

Query: 60  ITTHYIEEARQAHTVI 75
           I TH+ E    A  +I
Sbjct: 341 IITHHRELEDVADVII 356

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 36.0 bits (84), Expect = 4e-04
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 5/41 (12%)

Query: 1   MEISSRG-----GQQRRVSFAVALMHDPELLILDEPTVGVD 36
             ++  G     GQ++ ++   A + +P++LILDE T  VD
Sbjct: 483 TVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 35.2 bits (82), Expect = 6e-04
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 10/58 (17%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDP----LLRQSIWNHLVQITKDGNKTVII 60
           GGQ++R+S A AL+  P++LILD+ T  VDP     +   +  +          T  I
Sbjct: 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT------KGCTTFI 533

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.96
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.96
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.96
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.96
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.96
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.95
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.95
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.95
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.95
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.95
1g6h_A	257	High-affinity branched-chain amino acid transport	99.95
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.95
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.95
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.95
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.95
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.95
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.95
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.95
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.95
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.95
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.95
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.95
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.95
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.94
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.94
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.94
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.94
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.94
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.94
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.94
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.94
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.94
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.94
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.94
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.93
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.93
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.93
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.93
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.93
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.92
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.92
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.92
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.92
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.92
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.92
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.92
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.92
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.92
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.92
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.92
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.92
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.91
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.91
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.91
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.91
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.9
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.89
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.88
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.88
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.88
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.88
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.88
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.88
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.87
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.87
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.87
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.87
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.87
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.87
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.87
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.86
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.86
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.85
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.85
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.84
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.81
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.78
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.78
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.72
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.69
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.66
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.58
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.56
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.52
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.47
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.41
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.37
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.34
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.32
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.3
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.29
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.25
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.21
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.16
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.15
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.08
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.01
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.99
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.97
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.97
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.95
2og2_A	359	Putative signal recognition particle receptor; nuc	98.95
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.85
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.73
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.72
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.71
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.63
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.63
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.6
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.59
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.57
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.57
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.45
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.35
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.33
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.33
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.3
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.24
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.21
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.2
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.12
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.07
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.97
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.95
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.89
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.89
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.82
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.81
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.62
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.58
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.55
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.51
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.51
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.45
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.44
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.33
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.12
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.06
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.99
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.92
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.79
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.79
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.76
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.61
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.13
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.94
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.88
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.5
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.49
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.39
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.36
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.29
2z43_A	324	DNA repair and recombination protein RADA; archaea	94.59
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	94.53
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	94.28
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	94.14
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	94.05
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	93.55
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	93.45
1u94_A	356	RECA protein, recombinase A; homologous recombinat	93.32
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	93.15
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	93.04
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	92.94
2eyu_A	261	Twitching motility protein PILT; pilus retraction	92.62
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	92.34
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	92.23
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	92.04
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	91.9
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	91.41
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	91.08
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	90.47
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	90.47
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	90.42
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	90.41
2ewv_A	372	Twitching motility protein PILT; pilus retraction	90.4
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	90.09
1xp8_A	366	RECA protein, recombinase A; recombination, radior	89.9
3bos_A	242	Putative DNA replication factor; P-loop containing	89.76
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	89.47
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	89.34
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	88.11
2qgz_A	308	Helicase loader, putative primosome component; str	87.3
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	87.13
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	86.63
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	86.39
1p9r_A	418	General secretion pathway protein E; bacterial typ	85.35
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	84.2
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	83.76
2chg_A	226	Replication factor C small subunit; DNA-binding pr	83.69
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	83.55
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	82.38
1x52_A	124	Pelota homolog, CGI-17; ERF1_3 domain, structural	82.01
3io5_A	333	Recombination and repair protein; storage dimer, i	81.93
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	81.15
4dgh_A	130	Sulfate permease family protein; STAS domain, anio	80.62

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.96  E-value=8.3e-30  Score=169.58  Aligned_cols=75  Identities=33%  Similarity=0.508  Sum_probs=69.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+..+..+++.+.++.++.|.|||++|||++.+..+|+++.
T Consensus       143 ~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~  217 (235)
T 3tif_A          143 PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIY  217 (235)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876558999999999997766888754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.96  E-value=6e-29  Score=175.16  Aligned_cols=76  Identities=29%  Similarity=0.455  Sum_probs=71.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|++++++.|.|||++||+++++.. ||+++.
T Consensus       160 ~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~v  236 (366)
T 3tui_C          160 YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAV  236 (366)
T ss_dssp             CTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEE
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence            4789999999999999999999999999999999999999999999999977779999999999999976 888753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.96  E-value=9.4e-29  Score=163.40  Aligned_cols=74  Identities=30%  Similarity=0.493  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++ |.|||++||+++++..+|+++.
T Consensus       138 ~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~d~v~~  211 (224)
T 2pcj_A          138 PYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELAELTHRTLE  211 (224)
T ss_dssp             GGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHTTSSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhCCEEEE
Confidence            5689999999999999999999999999999999999999999999998766 8999999999998855888753

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.96  E-value=3.6e-29  Score=170.28  Aligned_cols=75  Identities=37%  Similarity=0.519  Sum_probs=68.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|+++||||||+|||+.++..+++.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       141 ~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~  216 (275)
T 3gfo_A          141 THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFV  216 (275)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEE
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999863348999999999999876 888753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.96  E-value=1.1e-28  Score=166.44  Aligned_cols=74  Identities=38%  Similarity=0.592  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+..+..+++.+.++.++ |.|||++||+++++.. +|+++.
T Consensus       151 ~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~  225 (262)
T 1b0u_A          151 PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIF  225 (262)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEE
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999998665 8999999999999875 888753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.95  E-value=1.1e-28  Score=167.03  Aligned_cols=75  Identities=31%  Similarity=0.368  Sum_probs=69.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634           2 EISSRGGQQRRVSFAVALMH------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i   74 (79)
                      +.+||||||||++|||||+.      +|+++||||||+|||+..+..+++.++++.++.|.|||++|||++++.. +|++
T Consensus       139 ~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v  218 (266)
T 4g1u_C          139 YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRI  218 (266)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEE
T ss_pred             cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEE
Confidence            56899999999999999999      9999999999999999999999999999877667899999999999875 8887


Q ss_pred             ec
Q psy5634          75 ID   76 (79)
Q Consensus        75 ~~   76 (79)
                      +.
T Consensus       219 ~v  220 (266)
T 4g1u_C          219 ML  220 (266)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.95  E-value=7.8e-29  Score=165.65  Aligned_cols=75  Identities=31%  Similarity=0.424  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       124 ~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~  199 (240)
T 2onk_A          124 PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV  199 (240)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999865558999999999998865 788653

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.95  E-value=2e-28  Score=165.69  Aligned_cols=74  Identities=31%  Similarity=0.519  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.++ |.|||++||+++++.. +|+++.
T Consensus       157 ~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~  231 (263)
T 2olj_A          157 PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLF  231 (263)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEE
Confidence            5689999999999999999999999999999999999999999999998665 8999999999999875 788753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.95  E-value=2.9e-28  Score=162.42  Aligned_cols=74  Identities=27%  Similarity=0.487  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.+ .|.|||++||+++++.. +|+++.
T Consensus       137 ~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~  211 (240)
T 1ji0_A          137 GGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYV  211 (240)
T ss_dssp             SSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEE
Confidence            678999999999999999999999999999999999999999999999865 58999999999988765 888753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.95  E-value=2.1e-28  Score=172.00  Aligned_cols=76  Identities=36%  Similarity=0.524  Sum_probs=70.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++.+.++.++.|.|+|+||||++++.. +|+++.
T Consensus       135 ~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~v  211 (359)
T 3fvq_A          135 YPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAV  211 (359)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEE
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEE
Confidence            3678999999999999999999999999999999999999999998888877779999999999999976 898753

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.95  E-value=1.1e-28  Score=165.83  Aligned_cols=74  Identities=28%  Similarity=0.514  Sum_probs=68.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+..+..+++.+.++.++ |.|||++||+++++.. +|+++.
T Consensus       151 ~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~  225 (257)
T 1g6h_A          151 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYV  225 (257)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEE
T ss_pred             chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEE
Confidence            5689999999999999999999999999999999999999999999998655 8999999999998865 888753

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.95  E-value=3e-28  Score=163.76  Aligned_cols=75  Identities=28%  Similarity=0.391  Sum_probs=68.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+.++.++.|.|||++||+++++.. +|+++.
T Consensus       126 ~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~  201 (253)
T 2nq2_C          126 FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLL  201 (253)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999866558999999999999865 888753

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.95  E-value=2.5e-28  Score=165.44  Aligned_cols=75  Identities=29%  Similarity=0.398  Sum_probs=69.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.++.|.|||++||+++++..+|+++.
T Consensus       154 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~  228 (271)
T 2ixe_A          154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILF  228 (271)
T ss_dssp             GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999998865558999999999999877888754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.95  E-value=3.3e-28  Score=172.11  Aligned_cols=76  Identities=29%  Similarity=0.447  Sum_probs=70.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|+++||||||++||+..+.++++.|+++.++.|.|+|+||||++++.. +|+++.
T Consensus       130 ~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~v  206 (381)
T 3rlf_A          130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV  206 (381)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEE
T ss_pred             ChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999977668999999999999976 888753

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.95  E-value=7.6e-28  Score=162.19  Aligned_cols=74  Identities=30%  Similarity=0.415  Sum_probs=68.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.+ .|.|||++||+++++.. +|+++.
T Consensus       144 ~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~~d~v~~  218 (256)
T 1vpl_A          144 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEVEFLCDRIAL  218 (256)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHHTTTCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHHCCEEEE
Confidence            568999999999999999999999999999999999999999999999865 48999999999999986 888753

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.95  E-value=6.7e-28  Score=168.69  Aligned_cols=76  Identities=34%  Similarity=0.507  Sum_probs=70.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. +|+++.
T Consensus       124 ~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~v  200 (348)
T 3d31_A          124 NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAV  200 (348)
T ss_dssp             CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999877668999999999999875 788753

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.95  E-value=5.3e-28  Score=169.64  Aligned_cols=76  Identities=33%  Similarity=0.493  Sum_probs=69.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. +|+++.
T Consensus       142 ~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v  218 (355)
T 1z47_A          142 FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLV  218 (355)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred             CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999876668999999999999876 888753

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.95  E-value=5.5e-28  Score=163.20  Aligned_cols=74  Identities=34%  Similarity=0.536  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.++ |.|||++||+++++.. +|+++.
T Consensus       136 ~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~  210 (266)
T 2yz2_A          136 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVV  210 (266)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            5689999999999999999999999999999999999999999999998665 8999999999999876 888653

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.95  E-value=7.9e-28  Score=168.94  Aligned_cols=76  Identities=30%  Similarity=0.428  Sum_probs=69.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. +|+++.
T Consensus       130 ~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v  206 (359)
T 2yyz_A          130 KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAV  206 (359)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999876668999999999999875 888753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.95  E-value=8.9e-28  Score=169.17  Aligned_cols=76  Identities=26%  Similarity=0.405  Sum_probs=69.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|+++.++.|.|+|++|||++++.. +|+++.
T Consensus       136 ~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v  212 (372)
T 1g29_1          136 KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAV  212 (372)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999876668999999999999875 888753

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.95  E-value=5.4e-28  Score=169.27  Aligned_cols=75  Identities=31%  Similarity=0.395  Sum_probs=69.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. +|+++.
T Consensus       138 ~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v  213 (353)
T 1oxx_K          138 PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGV  213 (353)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876668999999999999876 888753

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.95  E-value=1.4e-27  Score=159.92  Aligned_cols=73  Identities=32%  Similarity=0.509  Sum_probs=67.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++ ++ |.|||++||+++.+..+|+++.
T Consensus       143 ~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~~-g~tviivtH~~~~~~~~d~v~~  215 (247)
T 2ff7_A          143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CK-GRTVIIIAHRLSTVKNADRIIV  215 (247)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-HT-TSEEEEECSSGGGGTTSSEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cC-CCEEEEEeCCHHHHHhCCEEEE
Confidence            4689999999999999999999999999999999999999999999998 44 8999999999998877888754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.95  E-value=7.8e-28  Score=169.11  Aligned_cols=75  Identities=37%  Similarity=0.516  Sum_probs=69.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. +|+++.
T Consensus       131 ~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v  206 (362)
T 2it1_A          131 PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAV  206 (362)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999876668999999999999875 888753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.94  E-value=1.2e-27  Score=168.71  Aligned_cols=76  Identities=28%  Similarity=0.424  Sum_probs=70.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|+++.++.|.|+|++|||++++.. +|+++.
T Consensus       138 ~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v  214 (372)
T 1v43_A          138 YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV  214 (372)
T ss_dssp             CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            4689999999999999999999999999999999999999999999999876668999999999999875 888753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.94  E-value=9.9e-28  Score=163.28  Aligned_cols=74  Identities=35%  Similarity=0.507  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEE--EEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTV--IITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tv--i~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.|.++.++ |.||  |++||+++++.. +|+++.
T Consensus       159 ~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~  235 (279)
T 2ihy_A          159 IGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILL  235 (279)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEE
Confidence            5689999999999999999999999999999999999999999999998766 8899  999999998865 788653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.94  E-value=1.2e-27  Score=160.21  Aligned_cols=74  Identities=20%  Similarity=0.236  Sum_probs=63.1

Q ss_pred             CCC-CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh--hcceec
Q psy5634           2 EIS-SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ--AHTVID   76 (79)
Q Consensus         2 ~~~-lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~--~d~i~~   76 (79)
                      +.+ ||||||||++|||||+.+|+++||||||+|||+.++..+++.|.++.+ .|.|||++||+++++..  +|+++.
T Consensus       140 ~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~  216 (250)
T 2d2e_A          140 LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHV  216 (250)
T ss_dssp             TTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEE
T ss_pred             cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEE
Confidence            456 999999999999999999999999999999999999999999998854 58999999999998876  488753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.94  E-value=2.7e-27  Score=159.50  Aligned_cols=73  Identities=26%  Similarity=0.480  Sum_probs=67.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+..+..+++.+.++. + |.|||++||+++.+..+|+++.
T Consensus       153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~~~d~i~~  225 (260)
T 2ghi_A          153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTISSAESIIL  225 (260)
T ss_dssp             SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGSTTCSEEEE
T ss_pred             cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHhCCEEEE
Confidence            46899999999999999999999999999999999999999999999884 4 7899999999998877888753

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.94  E-value=3.2e-27  Score=158.64  Aligned_cols=74  Identities=22%  Similarity=0.370  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcc
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPE-------LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHT   73 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~-------~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~   73 (79)
                      +.+||||||||++|||||+.+|+       ++||||||+|||+..+..+.+.+.++.++ |.|||++||+++++.. +|+
T Consensus       124 ~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~  202 (249)
T 2qi9_C          124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHR  202 (249)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSE
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCE
Confidence            56899999999999999999999       99999999999999999999999998655 8999999999999864 788


Q ss_pred             eec
Q psy5634          74 VID   76 (79)
Q Consensus        74 i~~   76 (79)
                      ++.
T Consensus       203 v~~  205 (249)
T 2qi9_C          203 AWL  205 (249)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.94  E-value=6.1e-27  Score=161.48  Aligned_cols=73  Identities=25%  Similarity=0.485  Sum_probs=67.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||++||+.+...+++.|.++.+  +.|+|+|||+++.+..+|+++.
T Consensus       188 g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~aD~i~v  260 (306)
T 3nh6_A          188 GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVNADQILV  260 (306)
T ss_dssp             SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHHHHTCSEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHHHHcCCEEEE
Confidence            468999999999999999999999999999999999999999999998753  6899999999999988999764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.94  E-value=2.6e-27  Score=160.06  Aligned_cols=72  Identities=26%  Similarity=0.373  Sum_probs=65.8

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh--hcceec
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ--AHTVID   76 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~--~d~i~~   76 (79)
                      +||||||||++|||||+.+|+++||||||+|||+.+++.+++.|.++.+ .|.|||++||+++++..  +|+++.
T Consensus       164 ~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~~~~~~~d~v~~  237 (267)
T 2zu0_C          164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHV  237 (267)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGGGGTSCCSEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHHHHhhcCCEEEE
Confidence            5999999999999999999999999999999999999999999998754 48999999999998875  688653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.94  E-value=1.5e-27  Score=159.14  Aligned_cols=73  Identities=23%  Similarity=0.435  Sum_probs=67.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.+.++. + |.|||++||+++.+..+|+++.
T Consensus       137 ~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~~d~v~~  209 (243)
T 1mv5_A          137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIVDADKIYF  209 (243)
T ss_dssp             SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHHHCSEEEE
T ss_pred             cCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHHhCCEEEE
Confidence            45899999999999999999999999999999999999999999999885 4 8999999999998877888753

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.94  E-value=9.5e-28  Score=158.34  Aligned_cols=73  Identities=23%  Similarity=0.353  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.++.++ |.|||++||+++++.. +|+++
T Consensus       131 ~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~  204 (214)
T 1sgw_A          131 LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREELSYCDVNENLH  204 (214)
T ss_dssp             GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGG
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEE
Confidence            5689999999999999999999999999999999999999999999998654 7899999999998876 56654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.94  E-value=9.8e-27  Score=169.81  Aligned_cols=75  Identities=20%  Similarity=0.317  Sum_probs=70.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|.+++++.|.|||+||||++++.. ||+++.
T Consensus       383 ~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~v  458 (538)
T 3ozx_A          383 VNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIV  458 (538)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999999999977678999999999999986 898764

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.94  E-value=8.2e-27  Score=154.51  Aligned_cols=73  Identities=32%  Similarity=0.487  Sum_probs=64.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHL-VQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l-~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+ .++. + |.|||++||+++++..+|+++.
T Consensus       128 ~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~-~~tvi~vtH~~~~~~~~d~v~~  201 (229)
T 2pze_A          128 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A-NKTRILVTSKMEHLKKADKILI  201 (229)
T ss_dssp             CTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-T-TSEEEEECCCHHHHHHCSEEEE
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-C-CCEEEEEcCChHHHHhCCEEEE
Confidence            4689999999999999999999999999999999999999999864 4442 3 7899999999998877888653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.93  E-value=7.4e-27  Score=155.49  Aligned_cols=73  Identities=29%  Similarity=0.503  Sum_probs=65.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLV---QITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~---~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+++.+.   ++ + .|.|||++||+++.+..+|+++.
T Consensus       125 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~~~~~~d~v~~  200 (237)
T 2cbz_A          125 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMSYLPQVDVIIV  200 (237)
T ss_dssp             SBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTST-T-TTSEEEEECSCSTTGGGSSEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChHHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999885   33 2 37999999999988777888753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.1e-26  Score=170.08  Aligned_cols=75  Identities=25%  Similarity=0.285  Sum_probs=69.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|.++.++.|.|||+||||++++.. +|+++.
T Consensus       465 ~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrviv  540 (608)
T 3j16_B          465 VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIV  540 (608)
T ss_dssp             SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            679999999999999999999999999999999999999999999999866568999999999999986 888764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.93  E-value=2.6e-26  Score=155.29  Aligned_cols=71  Identities=25%  Similarity=0.253  Sum_probs=64.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hc-ceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AH-TVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d-~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.+.++.   . |+|++||+++++.. +| +++.
T Consensus       126 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~~~~~~~~d~~i~~  198 (263)
T 2pjz_A          126 LYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHELDMLNLYKEYKAYF  198 (263)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCGGGGGGCTTSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCHHHHHHhcCceEEE
Confidence            56899999999999999999999999999999999999999999998763   2 99999999998865 88 7653

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.93  E-value=8.6e-26  Score=142.06  Aligned_cols=74  Identities=30%  Similarity=0.321  Sum_probs=64.9

Q ss_pred             CCCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           2 EISSRGGQQRRVSFA------VALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~la------ral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      +.+||||||||++||      |+++.+|++++|||||+|||+..+..+.+.+.++.++ |.|||++||+.+....+|+++
T Consensus        55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~d~ii  133 (148)
T 1f2t_B           55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELKDAADHVI  133 (148)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGGGGGGCSEEE
T ss_pred             hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHHHHHhCCEEE
Confidence            568999999999876      8999999999999999999999999999999987554 789999999996544578765


Q ss_pred             c
Q psy5634          76 D   76 (79)
Q Consensus        76 ~   76 (79)
                      .
T Consensus       134 ~  134 (148)
T 1f2t_B          134 R  134 (148)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.93  E-value=6.6e-26  Score=165.21  Aligned_cols=75  Identities=21%  Similarity=0.372  Sum_probs=69.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||+|+.+|+++||||||+|||+.++..+.+.|.+++++.|.|||++|||++++.. ||+++.
T Consensus       399 ~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~v  474 (538)
T 1yqt_A          399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMV  474 (538)
T ss_dssp             GGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999865558999999999999976 888753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.92  E-value=1.4e-25  Score=163.45  Aligned_cols=74  Identities=20%  Similarity=0.318  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.+ .|.|||+|||+++++.. +|+++.
T Consensus       156 ~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~~~~~~dri~v  230 (538)
T 1yqt_A          156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHV  230 (538)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999876 48999999999999876 788764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.92  E-value=1.5e-25  Score=165.36  Aligned_cols=75  Identities=23%  Similarity=0.381  Sum_probs=69.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|.++.++.|.|||++|||++++.. +|+++.
T Consensus       469 ~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~v  544 (607)
T 3bk7_A          469 VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV  544 (607)
T ss_dssp             GGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999876668999999999999976 888753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.92  E-value=7.6e-26  Score=154.83  Aligned_cols=73  Identities=32%  Similarity=0.483  Sum_probs=64.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHL-VQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l-~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+..+..+++.+ .++ .+ |.|||++||+++++..+|+++.
T Consensus       157 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~-~~-~~tviivtHd~~~~~~~d~i~~  230 (290)
T 2bbs_A          157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-MA-NKTRILVTSKMEHLKKADKILI  230 (290)
T ss_dssp             -CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC-TT-TSEEEEECCCHHHHHHSSEEEE
T ss_pred             cCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh-hC-CCEEEEEecCHHHHHcCCEEEE
Confidence            3689999999999999999999999999999999999999999864 344 33 7899999999998877888754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.92  E-value=2.4e-25  Score=164.38  Aligned_cols=74  Identities=20%  Similarity=0.330  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|+++.++ |.|||+||||++++.. +|+++.
T Consensus       226 ~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvIivsHdl~~~~~~adri~v  300 (607)
T 3bk7_A          226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDLAVLDYLSDVIHV  300 (607)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEecChHHHHhhCCEEEE
Confidence            5689999999999999999999999999999999999999999999998764 8999999999999876 788753

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.92  E-value=3.3e-25  Score=162.45  Aligned_cols=73  Identities=36%  Similarity=0.472  Sum_probs=67.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+.++.  .|+|+|++||+++.+..+|+++.
T Consensus       477 ~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~v  549 (587)
T 3qf4_A          477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPTALLADKILV  549 (587)
T ss_dssp             SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHHHTTSSEEEE
T ss_pred             CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHHHHhCCEEEE
Confidence            56899999999999999999999999999999999999999999998873  38999999999999988999764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.92  E-value=3e-25  Score=162.21  Aligned_cols=73  Identities=36%  Similarity=0.510  Sum_probs=67.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+.++. + |+|+|++||+++.+..+|+++.
T Consensus       478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~~d~i~~  550 (582)
T 3b5x_A          478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRLSTIEQADEILV  550 (582)
T ss_pred             CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHHhCCEEEE
Confidence            46899999999999999999999999999999999999999999999874 3 8999999999999888998764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.92  E-value=1.7e-25  Score=165.46  Aligned_cols=74  Identities=23%  Similarity=0.359  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPE--LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~--~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|+  +|||||||+|||+..+..+++.|+++.+ .|.|||+||||++++..+|+++.
T Consensus       200 ~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~d~ii~  275 (670)
T 3ux8_A          200 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDTMLAADYLID  275 (670)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCHHHHHHCSEEEE
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhhCCEEEE
Confidence            46899999999999999999998  9999999999999999999999999865 48999999999998878898763

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.92  E-value=2.7e-25  Score=162.48  Aligned_cols=73  Identities=30%  Similarity=0.490  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+.++. + |+|+|++||+++.+..+|+++.
T Consensus       478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~~d~i~~  550 (582)
T 3b60_A          478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIAHRLSTIEQADEIVV  550 (582)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGGGTTTCSEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHHHHHhCCEEEE
Confidence            46899999999999999999999999999999999999999999999885 3 8999999999998888898764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.92  E-value=3.9e-25  Score=163.55  Aligned_cols=74  Identities=28%  Similarity=0.467  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDP---ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p---~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|   ++|||||||+|||+..+..+++.+.++.++ |.|||+||||++++..+|+++.
T Consensus       541 ~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~vtHd~~~~~~~d~i~~  617 (670)
T 3ux8_A          541 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVIKTADYIID  617 (670)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHTTCSEEEE
T ss_pred             chhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHhCCEEEE
Confidence            5689999999999999999887   599999999999999999999999998654 8999999999999877999764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.92  E-value=3.3e-25  Score=162.04  Aligned_cols=73  Identities=27%  Similarity=0.463  Sum_probs=67.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||++||+.+...+.+.+.++. + ++|+|++||+++.+..+|+++.
T Consensus       475 g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~~d~i~~  547 (578)
T 4a82_A          475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-K-DRTTLIVAHRLSTITHADKIVV  547 (578)
T ss_dssp             GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGTTTCSEEEE
T ss_pred             CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHHcCCEEEE
Confidence            35899999999999999999999999999999999999999999998874 3 6899999999999888998764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.92  E-value=4e-25  Score=162.19  Aligned_cols=72  Identities=29%  Similarity=0.439  Sum_probs=67.3

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      .+||||||||++|||||+++|+++||||||++||+.+...+.+.+.++. + |+|+|++||+++.+..+|+++.
T Consensus       490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~~d~i~~  561 (598)
T 3qf4_B          490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-E-GKTSIIIAHRLNTIKNADLIIV  561 (598)
T ss_dssp             TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-T-TSEEEEESCCTTHHHHCSEEEE
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHHcCCEEEE
Confidence            5899999999999999999999999999999999999999999999874 3 8999999999999988998764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.91  E-value=9.7e-25  Score=161.24  Aligned_cols=75  Identities=17%  Similarity=0.209  Sum_probs=68.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      .+.+||||||||++|||||+.+|+++||||||++||+..+..+++.++++.+ .|.|||++||+++++.. +|+++.
T Consensus       218 ~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl~~~~~~~drv~v  293 (608)
T 3j16_B          218 DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDLSVLDYLSDFVCI  293 (608)
T ss_dssp             CTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCHHHHHHHCSEEEE
T ss_pred             ChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEE
Confidence            3679999999999999999999999999999999999999999999999865 48899999999999986 788754

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.91  E-value=7.8e-25  Score=153.08  Aligned_cols=74  Identities=19%  Similarity=0.253  Sum_probs=67.5

Q ss_pred             CCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           2 EISSRGGQQRRVSFAVALM------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      +.+||||||||++||+||+      .+|+++||||||+|||+..+..+++.+.++.+ .|.|||+|||+++++..+|+++
T Consensus       277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~~~~~d~~~  355 (365)
T 3qf7_A          277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREFSEAFDRKL  355 (365)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHHHTTCSCEE
T ss_pred             chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEE
Confidence            4689999999999999999      79999999999999999999999999999864 4899999999999977788875


Q ss_pred             c
Q psy5634          76 D   76 (79)
Q Consensus        76 ~   76 (79)
                      .
T Consensus       356 ~  356 (365)
T 3qf7_A          356 R  356 (365)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.91  E-value=8.2e-25  Score=159.66  Aligned_cols=72  Identities=21%  Similarity=0.311  Sum_probs=66.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +.+|||||||||+|||||+.+|+++||||||++||+..+..+++.|+++. + |.|||+|||+++++.. +|+++
T Consensus       136 ~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~-g~tii~vsHdl~~~~~~~d~i~  208 (538)
T 3ozx_A          136 ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-K-NKYVIVVDHDLIVLDYLTDLIH  208 (538)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC-T-TSEEEEECSCHHHHHHHCSEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEEeChHHHHhhCCEEE
Confidence            56899999999999999999999999999999999999999999999984 4 8999999999999876 77765

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.91  E-value=2.2e-25  Score=157.84  Aligned_cols=71  Identities=25%  Similarity=0.377  Sum_probs=64.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++.  .+.|+|++||+++.+..+|+++.
T Consensus       155 ~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~~~aDri~v  225 (390)
T 3gd7_A          155 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAMLECDQFLV  225 (390)
T ss_dssp             TSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGGTTCSEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHHHhCCEEEE
Confidence            499999999999999999999999999999999999999999998753  37899999999887767898754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.90  E-value=1e-23  Score=161.32  Aligned_cols=74  Identities=30%  Similarity=0.465  Sum_probs=68.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDP---ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p---~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+|||||||||+|||+|+++|   +++||||||+|||+...+.+++.|.++.+ .|.|||+||||++++..+|+++.
T Consensus       803 ~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL~~i~~ADrIiv  879 (916)
T 3pih_A          803 ATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNLDVIKNADHIID  879 (916)
T ss_dssp             STTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHTTCSEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhCCEEEE
Confidence            5689999999999999999875   79999999999999999999999999865 48999999999999988999874

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.89  E-value=2e-23  Score=163.24  Aligned_cols=73  Identities=26%  Similarity=0.459  Sum_probs=67.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||+|||+.+.+.+.+.+.+. . .|+|+|++||+++++..+|+++.
T Consensus      1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~-~~~tvi~isH~l~~i~~~dri~v 1241 (1284)
T 3g5u_A         1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-R-EGRTCIVIAHRLSTIQNADLIVV 1241 (1284)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-S-SSSCEEEECSCTTGGGSCSEEEE
T ss_pred             CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-C-CCCEEEEEecCHHHHHcCCEEEE
Confidence            4689999999999999999999999999999999999999999999875 3 48999999999999988999764

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.88  E-value=2.6e-23  Score=159.04  Aligned_cols=74  Identities=28%  Similarity=0.478  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPE--LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~--~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||+|+.+|+  ++||||||+|||+.....+++.|+++.+ .|.|||+||||++++..+|+++.
T Consensus       462 ~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivVtHd~~~~~~aD~ii~  537 (916)
T 3pih_A          462 ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVVEHDEEVIRNADHIID  537 (916)
T ss_dssp             GGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEECCCHHHHHTCSEEEE
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhCCEEEE
Confidence            46899999999999999999887  9999999999999999999999999854 58999999999999888998864

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.88  E-value=6.5e-23  Score=160.31  Aligned_cols=73  Identities=27%  Similarity=0.477  Sum_probs=67.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||++||+.+...+.+.+.+.. + |+|+|++||+++.+..+|+++.
T Consensus       524 g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~i~~~d~i~v  596 (1284)
T 3g5u_A          524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-E-GRTTIVIAHRLSTVRNADVIAG  596 (1284)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-T-TSEEEEECSCHHHHTTCSEEEE
T ss_pred             CCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHHcCCEEEE
Confidence            46899999999999999999999999999999999999999999888763 3 8999999999999988999864

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.88  E-value=1.3e-22  Score=141.73  Aligned_cols=70  Identities=24%  Similarity=0.412  Sum_probs=65.2

Q ss_pred             CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           5 SRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         5 lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      ||||||||++||++|+.+|  ++|||||||+|||+..+..+.+.|.++. + |.|||+|||+++++..+|+++.
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~~~~~~d~i~~  367 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQIAARAHHHYK  367 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHHHHTTCSEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHhhcCeEEE
Confidence            7999999999999999999  9999999999999999999999999985 3 7899999999988877888753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.88  E-value=7.7e-23  Score=157.28  Aligned_cols=71  Identities=24%  Similarity=0.295  Sum_probs=65.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+    .|.|+|++||+++++.. +|+++.
T Consensus       546 ~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~~l~~~adrii~  617 (986)
T 2iw3_A          546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSVFLDNVCEYIIN  617 (986)
T ss_dssp             GGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHHHHHHHCSEEEE
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEE
Confidence            468999999999999999999999999999999999999999999886    37899999999999976 787653

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.88  E-value=6.9e-23  Score=155.71  Aligned_cols=74  Identities=27%  Similarity=0.468  Sum_probs=68.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHD---PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~---p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||++|+.+   |+++||||||+|||+..+..+++.|.++.++ |.|||++|||++++..+|+++.
T Consensus       728 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVIvisHdl~~i~~aDrii~  804 (842)
T 2vf7_A          728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIAVEHKMQVVAASDWVLD  804 (842)
T ss_dssp             GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHTTCSEEEE
T ss_pred             cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHhCCEEEE
Confidence            568999999999999999996   7999999999999999999999999998654 8999999999999977898764

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.88  E-value=1e-22  Score=156.29  Aligned_cols=74  Identities=28%  Similarity=0.459  Sum_probs=67.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDP---ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p---~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||++|+.+|   +++||||||+|||+..+..+++.|.++.+ .|.|||++|||++++..+|+++.
T Consensus       843 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i~~aDrIiv  919 (972)
T 2r6f_A          843 ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDVIKTADYIID  919 (972)
T ss_dssp             GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHTTCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHhCCEEEE
Confidence            5689999999999999999865   99999999999999999999999999865 48999999999999877898764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.87  E-value=4e-23  Score=161.82  Aligned_cols=73  Identities=26%  Similarity=0.434  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++|||||||+||+.+.+.+.+.|.+..  .|+|+|+|+|.+..+..+|+|+.
T Consensus      1215 G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsTi~~aD~I~V 1287 (1321)
T 4f4c_A         1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNTVMNADCIAV 1287 (1321)
T ss_dssp             SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSSTTTTCSEEEE
T ss_pred             CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHHHHhCCEEEE
Confidence            46899999999999999999999999999999999999999999988764  37999999999999999999864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.87  E-value=7.8e-23  Score=160.17  Aligned_cols=73  Identities=32%  Similarity=0.500  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++||||+.++|+++||||||++||+.+...+.+.+.++.+  |+|+|++||++..+..+|+|+.
T Consensus       552 G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls~i~~aD~Iiv  624 (1321)
T 4f4c_A          552 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLSTIRNADLIIS  624 (1321)
T ss_dssp             SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTTTTTTCSEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999988753  7999999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.87  E-value=8.8e-23  Score=156.98  Aligned_cols=71  Identities=28%  Similarity=0.343  Sum_probs=63.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +++||||||||++|||+|+.+|++|||||||+|||+.+...+.+.|.++    |.|||++|||++++.. +|+++.
T Consensus       899 ~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~e~v~~l~DrViv  970 (986)
T 2iw3_A          899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSAEFTKNLTEEVWA  970 (986)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCHHHHTTTCCEEEC
T ss_pred             ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCHHHHHHhCCEEEE
Confidence            5689999999999999999999999999999999999999888877643    5699999999999875 788764

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.87  E-value=4.3e-22  Score=127.88  Aligned_cols=72  Identities=15%  Similarity=0.175  Sum_probs=63.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           2 EISSRGGQQRRVSFAVALMH----DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~----~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      +..||||||||++||++++.    +|+++||||||+|||+.+...+.+.+.++.+  +.++|++||+......+|+++
T Consensus        62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~~~~ad~i~  137 (173)
T 3kta_B           62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVMMANADKII  137 (173)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHHHTTCSEEE
T ss_pred             cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHHHHhCCEEE
Confidence            45799999999999999974    4699999999999999999999999988753  468999999988777788875

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.87  E-value=1.9e-22  Score=145.72  Aligned_cols=73  Identities=22%  Similarity=0.348  Sum_probs=67.1

Q ss_pred             CCCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISS-RGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~l-S~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +..| ||||+||++||++|+.+|  +++||||||+|||+.....+.+.|.++.+  |.|||+|||+++.+..+|+++.
T Consensus       394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~~~d~~~~  469 (517)
T 4ad8_A          394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAARAHHHYK  469 (517)
T ss_dssp             SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHHHSSEEEE
T ss_pred             HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHhCCEEEE
Confidence            3567 999999999999999999  99999999999999999999999999864  7899999999998888888753

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.87  E-value=3.6e-22  Score=137.91  Aligned_cols=73  Identities=30%  Similarity=0.346  Sum_probs=64.0

Q ss_pred             CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           2 EISSRGGQQR------RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         2 ~~~lS~G~kq------rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      +.+|||||||      |+++|++++.+|+++||||||+|||+..+..+.+.+.++.++ |.|||++||+.+....+|+++
T Consensus       246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~~~~~~d~~~  324 (339)
T 3qkt_A          246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELKDAADHVI  324 (339)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGGGGGGCSEEE
T ss_pred             hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHHhCCEEE
Confidence            4679999999      677888889999999999999999999999999999988654 789999999977655688765

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.86  E-value=3.4e-22  Score=153.43  Aligned_cols=74  Identities=24%  Similarity=0.369  Sum_probs=68.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+|||||+||++||++|..+|  ++|||||||+|||+...+.+++.|+++. +.|.|||+|+|+++++..+|+++.
T Consensus       502 ~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHdl~~i~~ADrIi~  577 (972)
T 2r6f_A          502 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLIVVEHDEDTMLAADYLID  577 (972)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCCHHHHHSCSEEEE
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhCCEEEE
Confidence            4689999999999999999985  9999999999999999999999999985 568999999999999888999875

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.85  E-value=9.3e-22  Score=149.54  Aligned_cols=74  Identities=22%  Similarity=0.448  Sum_probs=67.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+|||||||||+||++|+.+|  +++||||||+|||+...+.+++.+.++. +.|.|||+|||+++++..+|+++.
T Consensus       377 ~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~-~~G~TVIvVeHdl~~l~~aD~ii~  452 (842)
T 2vf7_A          377 TPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK-RGGNSLFVVEHDLDVIRRADWLVD  452 (842)
T ss_dssp             GGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCCHHHHTTCSEEEE
T ss_pred             cCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH-HcCCEEEEEcCCHHHHHhCCEEEE
Confidence            4689999999999999999999  5999999999999999999999999985 458999999999998877898764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.85  E-value=2.1e-22  Score=127.45  Aligned_cols=72  Identities=8%  Similarity=0.049  Sum_probs=64.0

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPL----------------LRQSIWNHLVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~----------------~~~~i~~~l~~~~~~~g~tvi~~tH~~~   66 (79)
                      ...|+|+|||++|||+++.+|++++|||||++||+.                ....+.+.+.++.++ |.|+|++||+++
T Consensus        82 ~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~  160 (171)
T 4gp7_A           82 NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPE  160 (171)
T ss_dssp             CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHH
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHH
Confidence            457999999999999999999999999999999999                558888888887665 899999999999


Q ss_pred             HHHhhccee
Q psy5634          67 EARQAHTVI   75 (79)
Q Consensus        67 ~~~~~d~i~   75 (79)
                      ++..++++.
T Consensus       161 ~~~~~~~~~  169 (171)
T 4gp7_A          161 EVEEVVFER  169 (171)
T ss_dssp             HHHHEEEEE
T ss_pred             Hhhhhhhcc
Confidence            998776653

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.84  E-value=3.1e-21  Score=132.34  Aligned_cols=71  Identities=18%  Similarity=0.196  Sum_probs=62.5

Q ss_pred             CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634           2 EISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      +.+||+|||||++||++|+    .+|+++||||||++||+...+.+.+.+.++. + |.++|++||+.+....+|++
T Consensus       217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~~~~~~~d~~  291 (322)
T 1e69_A          217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HTQFIVITHNKIVMEAADLL  291 (322)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TSEEEEECCCTTGGGGCSEE
T ss_pred             hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECCHHHHhhCceE
Confidence            3589999999999999997    6889999999999999999999999999873 3 78999999997655557764

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.81  E-value=1e-19  Score=128.58  Aligned_cols=72  Identities=14%  Similarity=0.170  Sum_probs=64.3

Q ss_pred             CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           3 ISSRGGQQRRVSFAVALM----HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~----~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      ..|||||||+++||++|+    .+|+++|||||+++||+..+..+.+.+.++.+ .+.++|++||+......+|+++
T Consensus       332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~~~~~d~~~  407 (430)
T 1w1w_A          332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTMFEKSDALV  407 (430)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHHHTTCSEEE
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHhCCEEE
Confidence            459999999999999999    58999999999999999999999999988743 3789999999987777788865

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.78  E-value=4.2e-19  Score=123.77  Aligned_cols=72  Identities=33%  Similarity=0.362  Sum_probs=61.3

Q ss_pred             CCCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634           2 EISSRGGQQRRV------SFAVALMHD-PELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv------~laral~~~-p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      +..|||||+||+      ++|++++.+ |+++||||||+|||+..+..+.+.+.++. . +.+||++||+++....+|++
T Consensus       278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~th~~~~~~~~d~~  355 (371)
T 3auy_A          278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-S-IPQMIIITHHRELEDVADVI  355 (371)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-S-CSEEEEEESCGGGGGGCSEE
T ss_pred             hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-c-CCeEEEEEChHHHHhhCCEE
Confidence            357999999988      567889999 99999999999999999999999998863 3 46899999998754557776


Q ss_pred             e
Q psy5634          75 I   75 (79)
Q Consensus        75 ~   75 (79)
                      +
T Consensus       356 ~  356 (371)
T 3auy_A          356 I  356 (371)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.78  E-value=1.5e-19  Score=115.78  Aligned_cols=68  Identities=10%  Similarity=0.072  Sum_probs=57.5

Q ss_pred             CCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec---CHHHHHh-
Q psy5634           2 EISSRGGQQRRVSFAVA-----LMHDPELLILDE--PTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH---YIEEARQ-   70 (79)
Q Consensus         2 ~~~lS~G~kqrv~lara-----l~~~p~~lllDE--P~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH---~~~~~~~-   70 (79)
                      +.+||||||||+++|++     ++.+|++++|||  ||+++|+...+.+.+.+.+    .+.|+|++||   +.+++.. 
T Consensus        74 ~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i  149 (178)
T 1ye8_A           74 GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEI  149 (178)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHH
T ss_pred             ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHH
Confidence            34799999999999996     999999999999  9999999999888877654    4677888885   8888765 


Q ss_pred             hcc
Q psy5634          71 AHT   73 (79)
Q Consensus        71 ~d~   73 (79)
                      +++
T Consensus       150 ~~r  152 (178)
T 1ye8_A          150 RRL  152 (178)
T ss_dssp             HTC
T ss_pred             Hhc
Confidence            554

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.72  E-value=6.4e-18  Score=118.51  Aligned_cols=65  Identities=22%  Similarity=0.342  Sum_probs=56.7

Q ss_pred             CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634           4 SSRGGQQRRVSFAVALM---------HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         4 ~lS~G~kqrv~laral~---------~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      .||+|||||++||++|+         .+|+++||||||++||+..+..+++.+.++.    .|+|++||. +.  .+|++
T Consensus       265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~~--~~~~i  337 (359)
T 2o5v_A          265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-AP--GAALT  337 (359)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-CT--TCSEE
T ss_pred             hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-cc--cCCEE
Confidence            59999999999999999         8999999999999999999999999987752    699999994 33  55554


Q ss_pred             e
Q psy5634          75 I   75 (79)
Q Consensus        75 ~   75 (79)
                      +
T Consensus       338 ~  338 (359)
T 2o5v_A          338 L  338 (359)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.6e-18  Score=124.66  Aligned_cols=66  Identities=12%  Similarity=0.080  Sum_probs=54.9

Q ss_pred             CCCCHHHHHHHHHHHH--HhcCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH------HHH
Q psy5634           3 ISSRGGQQRRVSFAVA--LMHDPEL----LILDE-PTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE------EAR   69 (79)
Q Consensus         3 ~~lS~G~kqrv~lara--l~~~p~~----lllDE-P~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~------~~~   69 (79)
                      .+||||||||+++||+  |+.+|++    +|||| ||++||+. .+.+.+++.    +.+.|+|++||+.+      ++.
T Consensus       234 ~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~----~~~~tviiVth~~~~~l~~~~~~  308 (460)
T 2npi_A          234 KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIE----KLNVNIMLVLCSETDPLWEKVKK  308 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHH----HTTCCEEEEECCSSCTHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHH----HhCCCEEEEEccCchhhhHHHHH
Confidence            4799999999999999  9999999    99999 99999999 555544443    34789999999877      554


Q ss_pred             h-hcc
Q psy5634          70 Q-AHT   73 (79)
Q Consensus        70 ~-~d~   73 (79)
                      . +|+
T Consensus       309 ~~~dr  313 (460)
T 2npi_A          309 TFGPE  313 (460)
T ss_dssp             HHHHH
T ss_pred             Hhccc
Confidence            4 676

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.66  E-value=1.1e-18  Score=114.33  Aligned_cols=56  Identities=13%  Similarity=0.115  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         8 G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      |||||++|||||+.+|+++||||||+|    ++..+++.|.++ + .|.||| +|||++++..
T Consensus       108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~~~~~~  163 (208)
T 3b85_A          108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDITQVDL  163 (208)
T ss_dssp             EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC------
T ss_pred             chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCHHHHhC
Confidence            999999999999999999999999999    788888888887 4 488999 9999987754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.58  E-value=4.7e-16  Score=112.43  Aligned_cols=72  Identities=13%  Similarity=0.022  Sum_probs=63.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhcCCcEEEEEecCH----------H
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPL-----LRQSIWNHLVQITKDGNKTVIITTHYI----------E   66 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~-----~~~~i~~~l~~~~~~~g~tvi~~tH~~----------~   66 (79)
                      +.+||+||+||+.+++++..+|+++++| ||++||+.     .+..+.+++..+. +.|.|+|++||+.          .
T Consensus       351 p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~-~~g~tvilvsh~~~~~~~~~~~~~  428 (525)
T 1tf7_A          351 PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAK-QEEITGLFTNTSDQFMGAHSITDS  428 (525)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH-HTTCEEEEEEECSSSSCCCSSCSS
T ss_pred             cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH-hCCCEEEEEECcccccCcccccCc
Confidence            4579999999999999999999999999 99999999     9999999888775 4589999999998          5


Q ss_pred             HHHh-hccee
Q psy5634          67 EARQ-AHTVI   75 (79)
Q Consensus        67 ~~~~-~d~i~   75 (79)
                      .+.. +|+++
T Consensus       429 ~l~~~~D~vi  438 (525)
T 1tf7_A          429 HISTITDTII  438 (525)
T ss_dssp             CCTTTCSEEE
T ss_pred             ccceeeeEEE
Confidence            5554 67765

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.56  E-value=6.8e-15  Score=112.86  Aligned_cols=71  Identities=17%  Similarity=0.122  Sum_probs=60.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEecCHHHHHhhcc
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIW-NHLVQITKDGNKTVIITTHYIEEARQAHT   73 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~-~~l~~~~~~~g~tvi~~tH~~~~~~~~d~   73 (79)
                      .+++|+||+|++.++++ +.+|+++|||||++|+|+.....+. .++..+.++.|.|+|++||+++.+..+++
T Consensus       733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~  804 (918)
T 3thx_B          733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN  804 (918)
T ss_dssp             -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred             HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence            35789999999999998 8999999999999999999999987 66666655568999999999987654443

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.52  E-value=4.2e-14  Score=108.64  Aligned_cols=72  Identities=18%  Similarity=0.173  Sum_probs=58.8

Q ss_pred             CCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634           3 ISSRGGQQRRVSFAVAL--MHDPELLILDEPTVGVDPLLRQSI-WNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         3 ~~lS~G~kqrv~laral--~~~p~~lllDEP~~glD~~~~~~i-~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      ..+|+|++++..+++++  +.+|+++|||||++|+|+.....+ +.++..+.++.|.++|++||+.+.+..+|++
T Consensus       720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~  794 (934)
T 3thx_A          720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQI  794 (934)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTC
T ss_pred             HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhccc
Confidence            46888888888888888  999999999999999999998888 5666666554589999999998877667764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.47  E-value=4.9e-16  Score=110.72  Aligned_cols=71  Identities=7%  Similarity=0.082  Sum_probs=59.8

Q ss_pred             CCHH--HHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh----cC----CcEEEEEecC
Q psy5634           5 SRGG--QQRRVSFAVALMH----------DPELLILDEPTVGVDPLLRQSIWNHLVQITK----DG----NKTVIITTHY   64 (79)
Q Consensus         5 lS~G--~kqrv~laral~~----------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~----~~----g~tvi~~tH~   64 (79)
                      ||+|  |+||+.||++|+.          +|+++++||||+|||+..+.++++.++++.+    +.    ..+++++||+
T Consensus       155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~  234 (413)
T 1tq4_A          155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKN  234 (413)
T ss_dssp             EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTC
T ss_pred             eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCc
Confidence            7899  9999999999999          9999999999999999999999999998752    22    3678899998


Q ss_pred             HHH--HHh-hccee
Q psy5634          65 IEE--ARQ-AHTVI   75 (79)
Q Consensus        65 ~~~--~~~-~d~i~   75 (79)
                      ++.  +.. +|++.
T Consensus       235 l~~~~~e~L~d~I~  248 (413)
T 1tq4_A          235 VCHYDFPVLMDKLI  248 (413)
T ss_dssp             TTSTTHHHHHHHHH
T ss_pred             CCccCHHHHHHHHH
Confidence            775  544 55543

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.41  E-value=5.6e-13  Score=103.15  Aligned_cols=71  Identities=11%  Similarity=0.074  Sum_probs=59.3

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcce
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLR-QSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTV   74 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~-~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i   74 (79)
                      +++|+++++ ++++++++.+|+++|||||++|+|+... ..++.++..+.++.|.++|++||+.+++.. +|++
T Consensus       850 stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~  922 (1022)
T 2o8b_B          850 STFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNV  922 (1022)
T ss_dssp             CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCS
T ss_pred             hhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcc
Confidence            456777765 9999999999999999999999999985 447788888765558999999999999875 5553

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.37  E-value=1.2e-12  Score=87.93  Aligned_cols=62  Identities=11%  Similarity=0.202  Sum_probs=49.4

Q ss_pred             CCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634           3 ISSRGGQ-QRRVSFAVALMHDPELLILDEPTV---G---VDP-LLRQSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus         3 ~~lS~G~-kqrv~laral~~~p~~lllDEP~~---g---lD~-~~~~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      .++|.++ +|++. ++++..+|+++++|||++   +   +|+ .....+.+.|++++++.|.|||++||+.
T Consensus       128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~  197 (296)
T 1cr0_A          128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK  197 (296)
T ss_dssp             CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred             CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence            4688888 66666 999999999999999999   5   455 6667888999998777789999999995

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.34  E-value=1.3e-12  Score=87.35  Aligned_cols=64  Identities=11%  Similarity=0.040  Sum_probs=51.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTV--GVDPLLR---QSIWNHLVQITKDGNKTVIITTHYIEEA   68 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~--glD~~~~---~~i~~~l~~~~~~~g~tvi~~tH~~~~~   68 (79)
                      +..||+|+++++   ++++.+|+++++|||++  ++|+...   ..+++.|.+++++.|.|||+++|+....
T Consensus       116 ~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~  184 (279)
T 1nlf_A          116 PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA  184 (279)
T ss_dssp             CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred             cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence            567999997765   68888999999999999  9997443   7788888888766689999999998765

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.32  E-value=3.6e-12  Score=81.47  Aligned_cols=72  Identities=15%  Similarity=0.114  Sum_probs=58.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEecCH--------HHHHh-h
Q psy5634           5 SRGGQQRRVSFAVALMHDPE--LLILDEPTVGV--DPLLRQSIWNHLVQITKDGNKTVIITTHYI--------EEARQ-A   71 (79)
Q Consensus         5 lS~G~kqrv~laral~~~p~--~lllDEP~~gl--D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~--------~~~~~-~   71 (79)
                      .|.++.++...+.+...+|+  ++++|||++++  |+.....+++.+.+++++.|.|||++||+.        ..+.. +
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~  183 (235)
T 2w0m_A          104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA  183 (235)
T ss_dssp             CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred             CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence            48888888888777778999  99999999877  998889999999998777799999999998        33554 6


Q ss_pred             cceec
Q psy5634          72 HTVID   76 (79)
Q Consensus        72 d~i~~   76 (79)
                      |+++.
T Consensus       184 d~vi~  188 (235)
T 2w0m_A          184 DGIIR  188 (235)
T ss_dssp             SEEEE
T ss_pred             eEEEE
Confidence            77653

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.30  E-value=5e-14  Score=90.75  Aligned_cols=72  Identities=10%  Similarity=0.221  Sum_probs=57.9

Q ss_pred             CCHHHHHHHHHHH---HHhcCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           5 SRGGQQRRVSFAV---ALMHDPELLILDEPTVGV----DPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         5 lS~G~kqrv~lar---al~~~p~~lllDEP~~gl----D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++|.+.++-....   +|+.+|++++|||||+|+    |+..+.++.+.+.++.++.|.|+|++|||++++.. +|+++.
T Consensus       121 ~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~  200 (207)
T 1znw_A          121 LAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLV  200 (207)
T ss_dssp             HHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHH
Confidence            3444444444444   788999999999999998    78899999999999876568999999999999976 888754

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.29  E-value=1.2e-12  Score=90.48  Aligned_cols=61  Identities=16%  Similarity=0.204  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           7 GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         7 ~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      |||+||++|++||..+|+++++|||++.       ++.+.+..+. .++.|+|+++|+.+....+|+++
T Consensus       225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~-~g~~tvi~t~H~~~~~~~~dri~  285 (330)
T 2pt7_A          225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC-SGHKGTLTTLHAGSSEEAFIRLA  285 (330)
T ss_dssp             TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH-TTCCCEEEEEECSSHHHHHHHHH
T ss_pred             CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh-cCCCEEEEEEcccHHHHHhhhhe
Confidence            7999999999999999999999999982       3456666653 43568999999998655677764

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.25  E-value=8e-12  Score=94.48  Aligned_cols=63  Identities=21%  Similarity=0.231  Sum_probs=53.9

Q ss_pred             CCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           4 SSRGGQQRRVSFAVAL--MHDPELLILDEP---TVGVDPLLR-QSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         4 ~lS~G~kqrv~laral--~~~p~~lllDEP---~~glD~~~~-~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      .+|+|+++++.+++++  +.+|+++|||||   |+++|+... ..+.+.+.+    .|.++|++||+.++...
T Consensus       635 g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~l~~~  703 (765)
T 1ewq_A          635 GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFELTAL  703 (765)
T ss_dssp             CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHHHHTC
T ss_pred             cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHHh
Confidence            5899999999999999  999999999999   888998875 467776654    37899999999987653

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.21  E-value=1.7e-11  Score=93.10  Aligned_cols=70  Identities=14%  Similarity=0.180  Sum_probs=53.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCcEEEEEecCHHHHHhhcc
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSI-WNHLVQITKDGNKTVIITTHYIEEARQAHT   73 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i-~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~   73 (79)
                      +++|+++++ ++.+...+.+|+++|||||++|+|+.....+ +.++..+.++.|.++|++||+.+.+..+|+
T Consensus       668 stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~  738 (800)
T 1wb9_A          668 STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEK  738 (800)
T ss_dssp             --CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred             hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhh
Confidence            356777765 4444556899999999999999999887775 677777755458999999999987655554

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.15  E-value=6.1e-14  Score=91.50  Aligned_cols=72  Identities=14%  Similarity=0.097  Sum_probs=60.2

Q ss_pred             CCCHHHHHHHHH-----HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc------CCcEEEEEecCHHHHHh-h
Q psy5634           4 SSRGGQQRRVSF-----AVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD------GNKTVIITTHYIEEARQ-A   71 (79)
Q Consensus         4 ~lS~G~kqrv~l-----aral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~------~g~tvi~~tH~~~~~~~-~   71 (79)
                      +|||||+||+++     +++++.+|++++||||++++|......+.+.+.+..++      .+...|+++|+++++.. +
T Consensus       122 ~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~  201 (218)
T 1z6g_A          122 NINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQL  201 (218)
T ss_dssp             CHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHH
T ss_pred             cHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHH
Confidence            689999999999     89999999999999999999998888888777765432      45788999999988754 5


Q ss_pred             ccee
Q psy5634          72 HTVI   75 (79)
Q Consensus        72 d~i~   75 (79)
                      ++++
T Consensus       202 ~~ii  205 (218)
T 1z6g_A          202 KNYL  205 (218)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.08  E-value=2.3e-10  Score=72.88  Aligned_cols=63  Identities=14%  Similarity=0.077  Sum_probs=48.7

Q ss_pred             CCCHHH--HHHHHHHHHHhcC-CCEEEEeCCCCCCCHHH--------HHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634           4 SSRGGQ--QRRVSFAVALMHD-PELLILDEPTVGVDPLL--------RQSIWNHLVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus         4 ~lS~G~--kqrv~laral~~~-p~~lllDEP~~glD~~~--------~~~i~~~l~~~~~~~g~tvi~~tH~~~   66 (79)
                      +.|+++  +++++.+++++.+ |+++++|||++.+|+..        ...+++.|++++++.|.|+|+++|...
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~  157 (220)
T 2cvh_A           84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF  157 (220)
T ss_dssp             CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence            345553  5688888899986 99999999999999732        244566677777666899999999865

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.01  E-value=7.7e-11  Score=80.69  Aligned_cols=50  Identities=20%  Similarity=0.214  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634           4 SSRGGQQRRVSFAVALMHDPE--LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH   63 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~--~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH   63 (79)
                      +||   |||+++||+++.+|+  +++|| ||+|+|+...      +.++.++.|.|+|++||
T Consensus       204 eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiTh  255 (302)
T 3b9q_A          204 ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTK  255 (302)
T ss_dssp             HHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEEC
T ss_pred             HHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeC
Confidence            467   899999999999999  99999 9999998854      23444445899999999

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.99  E-value=6.5e-10  Score=74.60  Aligned_cols=56  Identities=18%  Similarity=0.218  Sum_probs=44.6

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634          12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus        12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      +++|+++|..+|+++++|||+   |+.....++   +. +. .|.+|++++|+.+....+|+++
T Consensus        88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~-~g~~vl~t~H~~~~~~~~dri~  143 (261)
T 2eyu_A           88 ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AE-TGHLVFGTLHTNTAIDTIHRIV  143 (261)
T ss_dssp             HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HH-TTCEEEEEECCSSHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-Hc-cCCEEEEEeCcchHHHHHHHHh
Confidence            799999999999999999999   888765443   32 33 4889999999987555567654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.97  E-value=2.5e-10  Score=73.02  Aligned_cols=70  Identities=16%  Similarity=0.087  Sum_probs=46.9

Q ss_pred             CHHH-HHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634           6 RGGQ-QRRVSFAVALMH-------DPELLILDEPTVGVDPLL------------RQSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus         6 S~G~-kqrv~laral~~-------~p~~lllDEP~~glD~~~------------~~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      +.++ ++.+..++.++.       +|+++++|||++++|+..            ...+++.+.+++++.|.|||++||..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~  180 (231)
T 4a74_A          101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ  180 (231)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred             ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence            3443 333555555555       999999999999999841            23677778877766689999999955


Q ss_pred             HH----HHh-hccee
Q psy5634          66 EE----ARQ-AHTVI   75 (79)
Q Consensus        66 ~~----~~~-~d~i~   75 (79)
                      ..    +.. +|+++
T Consensus       181 ~~~g~~~~~~~d~~l  195 (231)
T 4a74_A          181 ANGGHILAHSATLRV  195 (231)
T ss_dssp             ---------CCSEEE
T ss_pred             cCcchhhHhhceEEE
Confidence            44    554 56654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.97  E-value=6.4e-10  Score=77.22  Aligned_cols=63  Identities=17%  Similarity=0.085  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634           6 RGGQQRRVSFAVALM-------HDPELLILDEPTVGVDPLL------------RQSIWNHLVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus         6 S~G~kqrv~laral~-------~~p~~lllDEP~~glD~~~------------~~~i~~~l~~~~~~~g~tvi~~tH~~~   66 (79)
                      |.++++++.++++++       .+|+++++||||+++|+..            ..+++..|.+++++.|.|||+++|...
T Consensus       208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~  287 (349)
T 1pzn_A          208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA  287 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence            578899999999999       6899999999999999852            356667777777777899999999875


Q ss_pred             HH
Q psy5634          67 EA   68 (79)
Q Consensus        67 ~~   68 (79)
                      ..
T Consensus       288 ~~  289 (349)
T 1pzn_A          288 RP  289 (349)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.95  E-value=5.1e-11  Score=80.33  Aligned_cols=56  Identities=11%  Similarity=0.117  Sum_probs=45.0

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      .+|||||+||+++|||++.   ++++|||+.|||+..    .++++.+.+ . .++|++.|..+.
T Consensus        97 ~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~K~D~  152 (270)
T 3sop_A           97 EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIAKADT  152 (270)
T ss_dssp             HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEETTGGG
T ss_pred             HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEecccc
Confidence            4699999999999999886   999999999999987    344455533 3 788888887653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.95  E-value=2.7e-10  Score=79.91  Aligned_cols=51  Identities=20%  Similarity=0.217  Sum_probs=42.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634           4 SSRGGQQRRVSFAVALMHDPE--LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY   64 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~--~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~   64 (79)
                      +||   +||++|||+++.+|+  +++|| ||+|+|+....      .++.+..|.|+|++||.
T Consensus       261 eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThl  313 (359)
T 2og2_A          261 ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKL  313 (359)
T ss_dssp             HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred             HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence            467   899999999999999  99999 99999988542      33444458999999993

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.85  E-value=3e-09  Score=74.33  Aligned_cols=55  Identities=22%  Similarity=0.299  Sum_probs=43.7

Q ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634          14 SFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus        14 ~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +|++||..+|+++++|||+   |+...+    .+.+.+. .|.++++++|+.+.+..+|+++.
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~~~----~~~~~~~-~G~~vl~t~H~~~~~~~~dRli~  242 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLETIR----LALTAAE-TGHLVFGTLHTTSAAKTIDRVVD  242 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHHHH----HHHHHHH-TTCEEEEEESCSSHHHHHHHHHH
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHHHH----HHHHHHh-cCCEEEEEEccChHHHHHHHHhh
Confidence            8999999999999999999   655533    3344443 48999999999998876888754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.73  E-value=2.6e-08  Score=71.97  Aligned_cols=65  Identities=17%  Similarity=0.222  Sum_probs=51.9

Q ss_pred             HHHHHHHHHh-cCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH---------Hh-hcce
Q psy5634          11 RRVSFAVALM-HDPELLILDEPTV-----GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA---------RQ-AHTV   74 (79)
Q Consensus        11 qrv~laral~-~~p~~lllDEP~~-----glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~---------~~-~d~i   74 (79)
                      +.-.+...|. .+|+++++||||+     ++|+..++.+++++.++.+ .|.|+|++||+++++         .. +|++
T Consensus       126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~v  204 (525)
T 1tf7_A          126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNV  204 (525)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEE
T ss_pred             HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEE
Confidence            3444555664 6899999999997     4699999999999998865 489999999999874         44 7876


Q ss_pred             ec
Q psy5634          75 ID   76 (79)
Q Consensus        75 ~~   76 (79)
                      +.
T Consensus       205 i~  206 (525)
T 1tf7_A          205 VI  206 (525)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.72  E-value=9.8e-11  Score=80.45  Aligned_cols=57  Identities=14%  Similarity=0.036  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA   68 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~   68 (79)
                      ..|||||+||+++|++++.+|+++|+|||+..+|+..     .   .+.+..+ ..|+++|+.+..
T Consensus       175 ~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~---~l~~~~D-~~I~V~a~~~~~  231 (312)
T 3aez_A          175 PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----L---MVSDLFD-FSLYVDARIEDI  231 (312)
T ss_dssp             EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----C---CGGGGCS-EEEEEEECHHHH
T ss_pred             ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----H---HHHHhcC-cEEEEECCHHHH
Confidence            4799999999999999999999999999999998521     1   1222223 457778887664

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.71  E-value=4.3e-10  Score=76.60  Aligned_cols=56  Identities=16%  Similarity=0.106  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTV-GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~-glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~   66 (79)
                      .++|||+|||+.++|+++    ++++||||+ |||+...    +.++++.++.+.++|+++||+.
T Consensus       112 ~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          112 HDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             HHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            358999999999888886    999999998 5999873    4455554444789999999973

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.63  E-value=3.5e-11  Score=82.84  Aligned_cols=51  Identities=14%  Similarity=0.180  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      +..||||||||   |||++.+|++||    |++||+.+...+..               +||++..+..+|++
T Consensus       198 g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------------ltH~~~~~~~aD~i  248 (305)
T 2v9p_A          198 GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------------LHSRVQTFRFEQPC  248 (305)
T ss_dssp             TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------------GTTTEEEEECCCCC
T ss_pred             ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------------HhCCHHHHHhCCEE
Confidence            45899999999   999999999999    99999998888752               16766555555655

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.63  E-value=2.1e-09  Score=74.83  Aligned_cols=61  Identities=18%  Similarity=0.254  Sum_probs=49.5

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEecCHHHHHhhcce
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITK-DGNK-----TVIITTHYIEEARQAHTV   74 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~-~~g~-----tvi~~tH~~~~~~~~d~i   74 (79)
                      ..||+|| |++++|   +.+|++      |+|+|+.....+.+++.+..+ +.|.     ||+++|||++. .-+|++
T Consensus       170 ~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~-~i~d~v  236 (347)
T 2obl_A          170 TRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND-PIGDEV  236 (347)
T ss_dssp             HHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC-HHHHHH
T ss_pred             HHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC-hhhhhe
Confidence            4689999 899998   577777      999999999999999988754 4577     99999999872 225553

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.60  E-value=1.6e-08  Score=63.85  Aligned_cols=50  Identities=6%  Similarity=-0.039  Sum_probs=45.3

Q ss_pred             CCCHHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q psy5634           4 SSRGGQQRR-VSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD   53 (79)
Q Consensus         4 ~lS~G~kqr-v~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~   53 (79)
                      .+|+||+|+ +..+++++.+|..+++||||+++|+....++++.+.++..+
T Consensus       149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            589999999 89999999999999999999999999999999999987644

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.59  E-value=2.1e-07  Score=57.98  Aligned_cols=47  Identities=23%  Similarity=0.237  Sum_probs=39.5

Q ss_pred             HhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634          19 LMHDPELLILDEPTV-GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus        19 l~~~p~~lllDEP~~-glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~   66 (79)
                      .+.+|+++++|||++ ++|+..+..+.+++....+ .|.++|++||...
T Consensus        97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~  144 (180)
T 3ec2_A           97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSL  144 (180)
T ss_dssp             HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCS
T ss_pred             HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCCh
Confidence            456999999999985 9999999999998887654 4789999999753

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.57  E-value=2.1e-09  Score=69.15  Aligned_cols=45  Identities=13%  Similarity=0.072  Sum_probs=35.4

Q ss_pred             CCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q psy5634           4 SSRGGQQRRV-SFAV---ALMHDPELLILDE--PTVGVDPLLRQSIWNHLV   48 (79)
Q Consensus         4 ~lS~G~kqrv-~lar---al~~~p~~lllDE--P~~glD~~~~~~i~~~l~   48 (79)
                      ++|+|||+++ ++.+   |++.+|+++|+||  |+..+|+...+.+.+.+.
T Consensus        83 ~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~  133 (189)
T 2i3b_A           83 DLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS  133 (189)
T ss_dssp             CHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence            5899999888 4444   5789999999999  899999887666655543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.57  E-value=5.8e-09  Score=74.58  Aligned_cols=53  Identities=19%  Similarity=0.237  Sum_probs=46.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCc-----EEEEEecCHH
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITK---DGNK-----TVIITTHYIE   66 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~---~~g~-----tvi~~tH~~~   66 (79)
                      .||+|| ||+++|   +.+|++      |+|+|+.....+.+++.++.+   +.|.     ||+++|||++
T Consensus       258 ~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~  318 (438)
T 2dpy_A          258 RYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ  318 (438)
T ss_dssp             HHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC
T ss_pred             HHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc
Confidence            589999 999998   888888      999999999999999988755   2364     9999999996

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.45  E-value=1.2e-11  Score=79.04  Aligned_cols=64  Identities=11%  Similarity=0.019  Sum_probs=54.3

Q ss_pred             CCCCCHHH----HHHHHHHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634           2 EISSRGGQ----QRRVSFAVALMHDPELLILDEPTVG-------VDPLLRQSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus         2 ~~~lS~G~----kqrv~laral~~~p~~lllDEP~~g-------lD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      +.++|+|+    +||++++++++.+|.++++|||+++       ||+.....+.+.+.+..++.|.|++.++|+.
T Consensus        87 ~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~  161 (211)
T 3asz_A           87 VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY  161 (211)
T ss_dssp             CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            34688886    4688899999999999999999999       9999999898888876555588999999974

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.35  E-value=9.4e-08  Score=65.42  Aligned_cols=56  Identities=20%  Similarity=0.172  Sum_probs=39.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634           5 SRGGQQRRVSFAVALMHDPE--LLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus         5 lS~G~kqrv~laral~~~p~--~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      ++...+||+++||+++.+|+  ++.|| |+++      ..+.+.+.++.+..|.|+|++||+...
T Consensus       203 ~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~------~~~~~~~~~~~~~~~~t~iivTh~d~~  260 (304)
T 1rj9_A          203 MEELKKVKRAIAKADPEEPKEVWLVLD-AVTG------QNGLEQAKKFHEAVGLTGVIVTKLDGT  260 (304)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC------THHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH------HHHHHHHHHHHHHcCCcEEEEECCccc
Confidence            34566899999999999999  44555 4444      445555566554458999999998543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.33  E-value=6.8e-07  Score=60.52  Aligned_cols=45  Identities=13%  Similarity=0.239  Sum_probs=37.3

Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634          19 LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus        19 l~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~   66 (79)
                      +..+|+++++|||++ ||+...+.+.+.+.+..  .+.++|++||+..
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~  175 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMS  175 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSC
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHH
Confidence            366899999999999 99999999999988763  3689999999864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.33  E-value=1.1e-06  Score=56.38  Aligned_cols=48  Identities=19%  Similarity=0.206  Sum_probs=32.4

Q ss_pred             cCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634          21 HDPELLILDEPTVGVDPL-------L-----RQSIWNHLVQITKDGNKTVIITTHYIEEA   68 (79)
Q Consensus        21 ~~p~~lllDEP~~glD~~-------~-----~~~i~~~l~~~~~~~g~tvi~~tH~~~~~   68 (79)
                      .+|+++++|||++.+|+.       .     ...++..+.+++++.|.|||+++|.....
T Consensus       118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~  177 (243)
T 1n0w_A          118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV  177 (243)
T ss_dssp             SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred             CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence            589999999999999975       2     34566667777666689999999976543

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.30  E-value=3.8e-08  Score=64.56  Aligned_cols=53  Identities=6%  Similarity=-0.032  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~   66 (79)
                      +..||+||+||+++ ++++.+|+++|+|||....+..        +.++   .+.+|+++||+..
T Consensus       114 ~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~~~  166 (245)
T 2jeo_A          114 VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDSDV  166 (245)
T ss_dssp             ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCHHH
T ss_pred             cccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---cCeEEEEECCHHH
Confidence            35799999999988 6888899999999999888764        2222   2689999999743

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.24  E-value=1.7e-06  Score=53.37  Aligned_cols=44  Identities=11%  Similarity=0.259  Sum_probs=34.8

Q ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE-EEEEecC
Q psy5634          19 LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKT-VIITTHY   64 (79)
Q Consensus        19 l~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~t-vi~~tH~   64 (79)
                      ++.+|+++++|||++ +++..++.+++++....++ |.+ +|++||.
T Consensus        80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~-g~~~iiits~~  124 (149)
T 2kjq_A           80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS-GKGFLLLGSEY  124 (149)
T ss_dssp             GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH-TCCEEEEEESS
T ss_pred             HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHc-CCcEEEEECCC
Confidence            466899999999998 6655588899988877544 677 8888884

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.21  E-value=1.7e-07  Score=64.74  Aligned_cols=60  Identities=10%  Similarity=-0.107  Sum_probs=45.5

Q ss_pred             CCHHHHHHHHHHHHHh-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634           5 SRGGQQRRVSFAVALM-HDPELLILDE---PT------VGVDPLLRQSIWNHLVQITKDGNKTVIITTHY   64 (79)
Q Consensus         5 lS~G~kqrv~laral~-~~p~~lllDE---P~------~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~   64 (79)
                      +|+|++++..+++++. .+|++++|||   |+      .++|+..+..+.+.+.++.++.|.++++++|.
T Consensus       259 ~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~  328 (365)
T 1lw7_A          259 IQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP  328 (365)
T ss_dssp             HHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred             HHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence            4567777887877764 6999999999   65      58999999999999988766557899999985

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.20  E-value=3.8e-07  Score=67.27  Aligned_cols=49  Identities=12%  Similarity=0.201  Sum_probs=40.9

Q ss_pred             hcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEecCHHHH
Q psy5634          20 MHDPELLILDEP------TVGVDPLLRQSIWNHLVQITK-DGNKTVIITTHYIEEA   68 (79)
Q Consensus        20 ~~~p~~lllDEP------~~glD~~~~~~i~~~l~~~~~-~~g~tvi~~tH~~~~~   68 (79)
                      ...|+++++|||      |+|||+..+..+.+++.++.+ ..+.++++++|+.+.+
T Consensus       144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a  199 (608)
T 3szr_A          144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA  199 (608)
T ss_dssp             SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred             CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence            346999999999      999999999999999999654 3478999999997644

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.12  E-value=3.8e-06  Score=58.69  Aligned_cols=56  Identities=20%  Similarity=0.255  Sum_probs=41.0

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634          12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus        12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      +.+|+++|..+|+++++|||+   |+.....   .+.. + ..|.+++.++|+.+....+++++
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~-~~g~~vi~t~H~~~~~~~~~rl~  254 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-A-ETGHLVFGTLHTNTAIDTIHRIV  254 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-H-TTTCEEEECCCCCSHHHHHHHHH
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-H-hcCCEEEEEECcchHHHHHHHHH
Confidence            468999999999999999999   6665433   3333 2 34789999999976444466653

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.07  E-value=4e-07  Score=64.85  Aligned_cols=57  Identities=14%  Similarity=0.150  Sum_probs=40.4

Q ss_pred             CCHHHHHHHHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634           5 SRGGQQRRVSFAVALMHDPE---LLILDEPT-VGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus         5 lS~G~kqrv~laral~~~p~---~lllDEP~-~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      ++.+++++++|+|+++.+|+   ++++|||| .|+|+...    .++..+. . +.++|+|.|..+.
T Consensus       119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~-~v~iIlVinK~Dl  179 (418)
T 2qag_C          119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-E-KVNIIPLIAKADT  179 (418)
T ss_dssp             HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-T-TSEEEEEEESTTS
T ss_pred             HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-c-cCcEEEEEEcccC
Confidence            45667788889999999999   99999999 69998873    3344443 3 6778888776543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.97  E-value=7.1e-07  Score=60.91  Aligned_cols=49  Identities=16%  Similarity=0.125  Sum_probs=41.3

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      ++|+||+||+..+++++.+|+++  |||         .++.+.+++++  .+.+|+++||+.
T Consensus       141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~  189 (318)
T 1nij_A          141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGD  189 (318)
T ss_dssp             HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSC
T ss_pred             hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccC
Confidence            47999999999989999999987  998         66777777763  478999999964

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.95  E-value=9.5e-06  Score=57.45  Aligned_cols=45  Identities=11%  Similarity=0.153  Sum_probs=35.5

Q ss_pred             cCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634          21 HDPELLILDEPTVGVDPLLR------------QSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus        21 ~~p~~lllDEP~~glD~~~~------------~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      .+|+++++|||++.+|+...            .+++..|++++++.|.|||+++|..
T Consensus       272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~  328 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV  328 (400)
T ss_dssp             SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred             cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence            57999999999999997543            5677888888877799999999983

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.89  E-value=2.4e-07  Score=60.58  Aligned_cols=35  Identities=23%  Similarity=0.269  Sum_probs=30.5

Q ss_pred             HHH-hcCCCEEEEe----CCCCCCCHHHHHHHHHHHHHHH
Q psy5634          17 VAL-MHDPELLILD----EPTVGVDPLLRQSIWNHLVQIT   51 (79)
Q Consensus        17 ral-~~~p~~lllD----EP~~glD~~~~~~i~~~l~~~~   51 (79)
                      +++ +.+|+++++|    |||+++|+...+.+.+.+.++.
T Consensus       158 ~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~  197 (246)
T 2bbw_A          158 YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK  197 (246)
T ss_dssp             EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred             cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence            566 8999999999    9999999998888888877653

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.89  E-value=4.3e-06  Score=59.49  Aligned_cols=56  Identities=18%  Similarity=0.158  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH   63 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH   63 (79)
                      .+||+|++|++.++++|+..|.++++    +.+|+... ...+.+.+..++.+.+++++|-
T Consensus       251 ~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA  306 (416)
T 1udx_A          251 KTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSA  306 (416)
T ss_dssp             HHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred             HHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEEC
Confidence            35899999999999999999999999    99998766 4445555555555777777664

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.82  E-value=4.4e-05  Score=48.83  Aligned_cols=47  Identities=17%  Similarity=0.177  Sum_probs=35.8

Q ss_pred             cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634          21 HDPELLILDEPTVGV--DPLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus        21 ~~p~~lllDEP~~gl--D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      .+|+++++|+|++.+  |+....+++..+.+.+++.|.|||+++|....
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~  175 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG  175 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            589999999999887  55445555566667666778999999998764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.81  E-value=2e-07  Score=63.38  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=30.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPL   38 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~   38 (79)
                      ..+||||+||+++|++...+|+++|+|||++++|+.
T Consensus       133 ~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A          133 KSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             TTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             cccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence            468999999999873333399999999999999985

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.62  E-value=0.00019  Score=50.92  Aligned_cols=59  Identities=15%  Similarity=0.081  Sum_probs=45.2

Q ss_pred             CCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCC--------HHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634           3 ISSRGGQQRRVSFAVALM--HDPELLILDEPTVGVD--------PLLRQSIWNHLVQITKDGNKTVIITTH   63 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~--~~p~~lllDEP~~glD--------~~~~~~i~~~l~~~~~~~g~tvi~~tH   63 (79)
                      ..+|.++.+  +.++.+.  .+|+++++|+++...+        ......+.+.|+.++++.|.+||+++|
T Consensus       294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq  362 (454)
T 2r6a_A          294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ  362 (454)
T ss_dssp             TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence            357888776  4556665  6899999999987763        334466777788888777999999999

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.58  E-value=0.00015  Score=47.22  Aligned_cols=45  Identities=16%  Similarity=0.105  Sum_probs=37.0

Q ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634          16 AVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus        16 aral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      +..++..++++|||     ||+.....+.+.+.     .+.||+++||+++++..
T Consensus       101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~~~l~~  145 (219)
T 1s96_A          101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSKIELDR  145 (219)
T ss_dssp             HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSHHHHHH
T ss_pred             HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCHHHHHH
Confidence            34556678999999     99999999987654     37999999999987654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.55  E-value=0.00023  Score=51.66  Aligned_cols=57  Identities=16%  Similarity=0.299  Sum_probs=44.6

Q ss_pred             CCCCHHHHHHHHHHHHHh--c---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634           3 ISSRGGQQRRVSFAVALM--H---------------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY   64 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~--~---------------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~   64 (79)
                      +.+||||+|-.-++.+.+  .               .-+++++||. +-+|....+.++++++++    |.-+|+++=+
T Consensus       378 g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiatP~  451 (483)
T 3euj_A          378 SALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAAPE  451 (483)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEESS
T ss_pred             CCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEECcc
Confidence            579999999655544332  2               2368999999 999999999998888754    7888898866

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.51  E-value=2.8e-07  Score=57.77  Aligned_cols=65  Identities=11%  Similarity=0.070  Sum_probs=45.4

Q ss_pred             CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC-HHHHHh-hccee
Q psy5634           6 RGGQQRRVSFAV------ALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY-IEEARQ-AHTVI   75 (79)
Q Consensus         6 S~G~kqrv~lar------al~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~-~~~~~~-~d~i~   75 (79)
                      |+|+++++.++.      ++..+|+...+|+   ++|+..... ++.+..+. +.+.++|.+||. ++.+.. +++++
T Consensus        96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~  168 (189)
T 2bdt_A           96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYFYNTSHLQPTNLNDIVKNLK  168 (189)
T ss_dssp             HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSEEECSSSCGGGHHHHHHHHH
T ss_pred             hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEEEeCCCCChhhHHHHHHHHh
Confidence            666666666666      7777887777773   899988888 78777764 447899999998 777765 66654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.51  E-value=8.1e-07  Score=56.28  Aligned_cols=52  Identities=12%  Similarity=0.124  Sum_probs=36.1

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEE-------EEeCCCCC---CCHHHHHHHHHHHHHHHhcCC
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELL-------ILDEPTVG---VDPLLRQSIWNHLVQITKDGN   55 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~l-------llDEP~~g---lD~~~~~~i~~~l~~~~~~~g   55 (79)
                      .|||||+||++||||++.+|++.       .-|.|..+   +|....+.+.+.+.+..++.|
T Consensus       103 glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~~~  164 (171)
T 2f1r_A          103 GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREGG  164 (171)
T ss_dssp             SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred             CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhccC
Confidence            49999999999999999999873       23444321   233455777788877766654

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.45  E-value=5e-05  Score=57.44  Aligned_cols=66  Identities=17%  Similarity=0.142  Sum_probs=51.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEE-EecCHHHHHh
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTV-GVDPLLRQSIWNHLVQITKDGNKTVII-TTHYIEEARQ   70 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~-glD~~~~~~i~~~l~~~~~~~g~tvi~-~tH~~~~~~~   70 (79)
                      -+|.|+.++..+++.++.+++++|+|||.. ++|......+++.+.... ....++++ +||+.+.+..
T Consensus       190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~  257 (773)
T 2xau_A          190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQR  257 (773)
T ss_dssp             EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHH
T ss_pred             EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHH
Confidence            368999999999999999999999999996 999877766666665543 23567777 5998765543

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.44  E-value=0.00032  Score=48.58  Aligned_cols=56  Identities=16%  Similarity=0.250  Sum_probs=36.9

Q ss_pred             HHHHHHHHHhcC--CCEEEEeCCCCCCC----------H---HHHHHHHHHHHHH---HhcCCcEEEEEecCHH
Q psy5634          11 RRVSFAVALMHD--PELLILDEPTVGVD----------P---LLRQSIWNHLVQI---TKDGNKTVIITTHYIE   66 (79)
Q Consensus        11 qrv~laral~~~--p~~lllDEP~~glD----------~---~~~~~i~~~l~~~---~~~~g~tvi~~tH~~~   66 (79)
                      +.+.++++++.+  |+++++|||++.+.          +   ...+.+.+.+.++   +++.|.|||+++|...
T Consensus       126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~  199 (349)
T 2zr9_A          126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE  199 (349)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence            456677777755  99999999999883          2   1112333334433   4566899999999653

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.33  E-value=0.00049  Score=49.72  Aligned_cols=62  Identities=24%  Similarity=0.254  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH---hcCCcEEEEEecCHHHH
Q psy5634           7 GGQQRRVSFAVALMHDPELLILDEP----------TVGVDPLLRQSIWNHLVQIT---KDGNKTVIITTHYIEEA   68 (79)
Q Consensus         7 ~G~kqrv~laral~~~p~~lllDEP----------~~glD~~~~~~i~~~l~~~~---~~~g~tvi~~tH~~~~~   68 (79)
                      ++++.|..+.+|....|.++++||+          +.|.|+...+.+.+++..+-   ...+..||.+||.++.+
T Consensus        93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L  167 (476)
T 2ce7_A           93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL  167 (476)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred             cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence            5678888999999999999999999          34666665555555555442   23468899999987643

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.12  E-value=2.6e-05  Score=48.47  Aligned_cols=41  Identities=12%  Similarity=0.109  Sum_probs=33.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQIT   51 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~   51 (79)
                      ..+|+|++|+++++|++.++|+++        +|+...+.+++.+..+.
T Consensus       108 ~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~  148 (191)
T 1zp6_A          108 HYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG  148 (191)
T ss_dssp             EEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred             EEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence            358999999999999999999876        58888777777766553

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.06  E-value=0.005  Score=41.55  Aligned_cols=54  Identities=13%  Similarity=0.169  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Q psy5634           7 GGQQRRVSFAVALMHDPELLILDEP-TVGVDPLLRQSIWNHLVQITKDGNKTVIITT   62 (79)
Q Consensus         7 ~G~kqrv~laral~~~p~~lllDEP-~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t   62 (79)
                      ..+.+|.+++.+...+++++|+||| +.++|.....++....... . ...+++++.
T Consensus       165 p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~-~-~~~~~lv~~  219 (295)
T 1ls1_A          165 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL-G-PDEVLLVLD  219 (295)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH-C-CSEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc-C-CCEEEEEEe
Confidence            3455688888888899999999999 9999998888887766554 2 234554444

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.99  E-value=0.003  Score=43.79  Aligned_cols=56  Identities=11%  Similarity=0.118  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEec
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDG-NKTVIITTH   63 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~-g~tvi~~tH   63 (79)
                      +.||.++.+|+..|...+.++++++.|+|...+     ..+...++++.++. |..+|++-|
T Consensus       108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si-----~~i~~~ir~l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI-----EQIRLQLRKLKSQHKELGIAFIDY  164 (338)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH-----HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH-----HHHHHHHHHHHHhcCCCCEEEEec
Confidence            468999999999999999999999999986543     34555556665555 788888875

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.92  E-value=0.0024  Score=43.85  Aligned_cols=61  Identities=8%  Similarity=0.108  Sum_probs=46.3

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEe--cCHH
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILD-EPTVGVDPLLRQSIWNHLVQITKDGNKTVIITT--HYIE   66 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllD-EP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~t--H~~~   66 (79)
                      ..+|+|+++.+. +.+...++-++++| +|..++|......++..+.+...  +..+|++.  ||+.
T Consensus       230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~  293 (357)
T 2e87_A          230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA  293 (357)
T ss_dssp             TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred             hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence            457889988776 55555677889999 99999999988888777766532  67788887  7763

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.79  E-value=0.00082  Score=45.90  Aligned_cols=30  Identities=27%  Similarity=0.410  Sum_probs=27.2

Q ss_pred             CCCHHHHHHH---HHHHHHhcCCCEEEEeCCCC
Q psy5634           4 SSRGGQQRRV---SFAVALMHDPELLILDEPTV   33 (79)
Q Consensus         4 ~lS~G~kqrv---~laral~~~p~~lllDEP~~   33 (79)
                      .+|+|+.+++   ++++++..+|+++|+|+|..
T Consensus       165 ~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          165 HSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             cCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            5688999999   89999999999999999975

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.79  E-value=2.3e-05  Score=57.17  Aligned_cols=50  Identities=10%  Similarity=0.200  Sum_probs=34.6

Q ss_pred             HHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHH---HhcCCcEEEEEecCHH
Q psy5634          16 AVALMHDPE-LLILDEPTVGVDPLLRQSIWNHLVQI---TKDGNKTVIITTHYIE   66 (79)
Q Consensus        16 aral~~~p~-~lllDEP~~glD~~~~~~i~~~l~~~---~~~~g~tvi~~tH~~~   66 (79)
                      ++++...|. ++++||+.+-++.. ...+.+.+.++   .+..|.++|++||.+.
T Consensus       290 a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          290 HPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred             ccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence            344566787 89999998888733 23444444444   3445889999999976

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.76  E-value=0.00085  Score=46.16  Aligned_cols=29  Identities=24%  Similarity=0.464  Sum_probs=22.6

Q ss_pred             CCCHHHHHHHHHHHHH---hc--CCCEEEEeCCC
Q psy5634           4 SSRGGQQRRVSFAVAL---MH--DPELLILDEPT   32 (79)
Q Consensus         4 ~lS~G~kqrv~laral---~~--~p~~lllDEP~   32 (79)
                      .+|+|++||.+++++|   ..  ++.++++|||+
T Consensus       296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~  329 (365)
T 1lw7_A          296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS  329 (365)
T ss_dssp             -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence            4899999999999999   76  89999999996

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.61  E-value=0.0017  Score=46.42  Aligned_cols=53  Identities=2%  Similarity=-0.151  Sum_probs=45.0

Q ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634          13 VSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus        13 v~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      +.++++|..+++++++|+|+..|.+.....+.+.+.+..+..|..|+++|.+-
T Consensus       167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d  219 (427)
T 2qag_B          167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD  219 (427)
T ss_dssp             HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred             HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence            78999999999999999999999999999999999874456689999988653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.13  E-value=0.0063  Score=41.13  Aligned_cols=54  Identities=15%  Similarity=0.123  Sum_probs=34.4

Q ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCcEEEE-EecCHHHHHh
Q psy5634          12 RVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITK---DGNKTVII-TTHYIEEARQ   70 (79)
Q Consensus        12 rv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~---~~g~tvi~-~tH~~~~~~~   70 (79)
                      +.+++  .+.+|+++|+|  |+|+|+.....+.++ .+...   ..+.++++ ++|..+.+..
T Consensus       174 ~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el-~~~l~~~~~~~~~lVl~at~~~~~~~~  231 (296)
T 2px0_A          174 QQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDEL-KETIPFESSIQSFLVLSATAKYEDMKH  231 (296)
T ss_dssp             HHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHH-HHHSCCCTTEEEEEEEETTBCHHHHHH
T ss_pred             HHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHH-HHHHhhcCCCeEEEEEECCCCHHHHHH
Confidence            44455  45899999999  889998766555443 33322   22334555 5898777665

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.94  E-value=0.016  Score=40.98  Aligned_cols=44  Identities=11%  Similarity=0.338  Sum_probs=34.6

Q ss_pred             cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634          21 HDPELLILDEPTVGVDP-LLRQSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus        21 ~~p~~lllDEP~~glD~-~~~~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      .+|++|++||+..-.+. ...+.++..+.... +.|..+|++||+.
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~  237 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDRE  237 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSC
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCC
Confidence            38999999999776653 66777888888765 4478899999973

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.88  E-value=0.0017  Score=40.29  Aligned_cols=38  Identities=13%  Similarity=0.142  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy5634          11 RRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQI   50 (79)
Q Consensus        11 qrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~   50 (79)
                      +....|++++.+|++.++|  |+++|....+++++.+.+.
T Consensus       152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~  189 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE  189 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence            3467899999999999999  9999999999998887653

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.50  E-value=0.05  Score=35.66  Aligned_cols=61  Identities=20%  Similarity=0.264  Sum_probs=38.8

Q ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhc---CCcEEEEEecCHH
Q psy5634           6 RGGQQRRVSFAVALMHDPELLILDEPTVGVDP----------LLRQSIWNHLVQITKD---GNKTVIITTHYIE   66 (79)
Q Consensus         6 S~G~kqrv~laral~~~p~~lllDEP~~glD~----------~~~~~i~~~l~~~~~~---~g~tvi~~tH~~~   66 (79)
                      +++++.+..+..+...+|.++++||+.+-.+.          .....++..+......   .+..+|.+|++.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~  170 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ  170 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence            45677788888888889999999999765542          2333444444433211   2456777888754

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.49  E-value=0.019  Score=39.49  Aligned_cols=49  Identities=14%  Similarity=-0.002  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634          10 QRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus        10 kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      .+...+++++..++.++++|.++. .      .+.+.++.+.+..+.|+|++||.-
T Consensus       231 ~eL~~i~ral~~de~llvLDa~t~-~------~~~~~~~~~~~~~~it~iilTKlD  279 (328)
T 3e70_C          231 DEMKKIARVTKPNLVIFVGDALAG-N------AIVEQARQFNEAVKIDGIILTKLD  279 (328)
T ss_dssp             HHHHHHHHHHCCSEEEEEEEGGGT-T------HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred             HHHHHHHHHhcCCCCEEEEecHHH-H------HHHHHHHHHHHhcCCCEEEEeCcC
Confidence            445568899998888889985554 2      444555556555689999999953

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.39  E-value=0.03  Score=37.78  Aligned_cols=55  Identities=13%  Similarity=0.265  Sum_probs=41.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcE--EEEEecC
Q psy5634           5 SRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKT--VIITTHY   64 (79)
Q Consensus         5 lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~t--vi~~tH~   64 (79)
                      ||.++++|+..|...+.++++++.|+|...     ...+...+.++.++.|..  +|++-|-
T Consensus       134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~l  190 (315)
T 3bh0_A          134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDYL  190 (315)
T ss_dssp             HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence            788899999999988889999999998643     334555556655555667  8888763

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.36  E-value=0.011  Score=40.85  Aligned_cols=61  Identities=11%  Similarity=0.085  Sum_probs=42.7

Q ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634           6 RGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         6 S~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      +++...+..|+.++..+|+.+++|||..       .++.+.+..+ ..+..|++.++|.......++|+
T Consensus       236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l-~~g~~~~l~t~H~~~~~~~~~Rl  296 (361)
T 2gza_A          236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVA-ASGHGGSITSCHAGSCELTFERL  296 (361)
T ss_dssp             ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHH-HTTCCSCEEEEECSSHHHHHHHH
T ss_pred             ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHH-hcCCCeEEEEECCCCHHHHHHHH
Confidence            3556788899999999999999999985       2345556655 34456789999987644445654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.29  E-value=0.02  Score=38.49  Aligned_cols=47  Identities=15%  Similarity=0.027  Sum_probs=35.2

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCcEEEEEecCHHHH
Q psy5634          21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITK--DGNKTVIITTHYIEEA   68 (79)
Q Consensus        21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~--~~g~tvi~~tH~~~~~   68 (79)
                      .+|.++++||+... |+.....+...+.+...  ..+.++|++||+.+..
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~  172 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL  172 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence            45889999999776 88887777777655433  1478999999987543

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=94.59  E-value=0.031  Score=37.77  Aligned_cols=56  Identities=18%  Similarity=0.169  Sum_probs=38.0

Q ss_pred             HHHHHHHHHh---cCCCEEEEeCCCCCCCH--------H----HHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634          11 RRVSFAVALM---HDPELLILDEPTVGVDP--------L----LRQSIWNHLVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus        11 qrv~laral~---~~p~~lllDEP~~glD~--------~----~~~~i~~~l~~~~~~~g~tvi~~tH~~~   66 (79)
                      +.+..++.++   .+|+++++|+.++-...        .    ...++...|..++++.+.+||+++|-..
T Consensus       189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~  259 (324)
T 2z43_A          189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA  259 (324)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred             HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence            4566666666   67999999998865432        1    1244556666776677899999998654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=94.53  E-value=0.018  Score=39.47  Aligned_cols=45  Identities=11%  Similarity=0.245  Sum_probs=39.0

Q ss_pred             CCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy5634           4 SSRGGQQRRVSFAVALMH------DPELLILDEPTVGVDPLLRQSIWNHLVQITK   52 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~   52 (79)
                      .+|+|+++++..+++++.      +|+++.    +|++|.....++++.+.+...
T Consensus       210 ~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          210 RRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence            468899999999999887      688876    899999999999999988654

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=94.28  E-value=0.061  Score=36.75  Aligned_cols=56  Identities=18%  Similarity=0.183  Sum_probs=36.8

Q ss_pred             HHHHHHHHh----cCCCEEEEeCCCCCCCHH------------HHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634          12 RVSFAVALM----HDPELLILDEPTVGVDPL------------LRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus        12 rv~laral~----~~p~~lllDEP~~glD~~------------~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      .+..++.++    .+++++++|+.++-....            ...++...|..++++.+.+||+++|....
T Consensus       205 ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~  276 (343)
T 1v5w_A          205 LLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD  276 (343)
T ss_dssp             HHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---
T ss_pred             HHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceec
Confidence            344444555    579999999998765331            13455566677777778999999997543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=94.14  E-value=0.036  Score=34.20  Aligned_cols=37  Identities=14%  Similarity=0.188  Sum_probs=31.9

Q ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy5634          13 VSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQIT   51 (79)
Q Consensus        13 v~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~   51 (79)
                      ...|++++.+|++.++|  ++++|.....++++.+.+..
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence            45688999999999999  99999999999988877643

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=94.05  E-value=0.00024  Score=50.24  Aligned_cols=52  Identities=23%  Similarity=0.262  Sum_probs=40.4

Q ss_pred             CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hccee
Q psy5634          22 DP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVI   75 (79)
Q Consensus        22 ~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~   75 (79)
                      +|  ++.++|||+.++|+...++.++.+.......|.|++  +|....+.. ++++.
T Consensus       139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~  193 (392)
T 1ni3_A          139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVY  193 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHH
T ss_pred             CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHH
Confidence            78  999999999999999999999988876223466653  998877655 55543

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=93.55  E-value=0.054  Score=35.00  Aligned_cols=64  Identities=25%  Similarity=0.216  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHh--cCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH--HHHhhccee
Q psy5634          10 QRRVSFAVALM--HDPELLILDEPTV--GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE--EARQAHTVI   75 (79)
Q Consensus        10 kqrv~laral~--~~p~~lllDEP~~--glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~--~~~~~d~i~   75 (79)
                      +..+..++..+  .+.+++||||...  .++.....++++.+.+  +-.+..||+++.+..  .+..+|.|-
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~--Rp~~~~vIlTGr~ap~~l~e~AD~VT  175 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA--RPGHQTVIITGRGCHRDILDLADTVS  175 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT--SCTTCEEEEECSSCCHHHHHHCSEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh--CcCCCEEEEECCCCcHHHHHhCccee
Confidence            33444555666  5579999999865  2333334567777764  334689999999864  334567553

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=93.45  E-value=7.2e-06  Score=59.61  Aligned_cols=54  Identities=20%  Similarity=0.298  Sum_probs=39.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE--EecCHHHHHh
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVII--TTHYIEEARQ   70 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~--~tH~~~~~~~   70 (79)
                      .+|+||+||.+++          ++ | ++|+|+.....+++.+.++. ..+.|+++  +||+++++..
T Consensus       400 ~~s~G~~~R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~-~~~~tii~~~~sH~l~ei~~  455 (511)
T 2oap_1          400 WVRGNTRLRRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWD-PKEDKHIEVSMPKKLEKMAD  455 (511)
T ss_dssp             EESSSCEEEEEEE----------EE-E-EEECCSSSSCCEEEEEEEEE-TTTTEEEECSCCTHHHHHHH
T ss_pred             EEeCCCceEEEEE----------EE-E-EcCcccCCCeEEEEEeEEEc-ccCCEEEEcccHHHHHHHHH
Confidence            3678887776553          12 6 99999988777777666664 34788875  9999998764

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=93.32  E-value=0.32  Score=33.61  Aligned_cols=56  Identities=13%  Similarity=0.108  Sum_probs=33.8

Q ss_pred             HHHHHHHHHh--cCCCEEEEeCCCCCCCHHH------------H----HHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634          11 RRVSFAVALM--HDPELLILDEPTVGVDPLL------------R----QSIWNHLVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus        11 qrv~laral~--~~p~~lllDEP~~glD~~~------------~----~~i~~~l~~~~~~~g~tvi~~tH~~~   66 (79)
                      +...+++.++  .+++++++|++++-.....            +    .+++..|..++++.+.+||+++|-..
T Consensus       128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~  201 (356)
T 1u94_A          128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM  201 (356)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---
T ss_pred             HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence            3445566564  6799999999987663211            1    22333344445666899999988643

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=93.15  E-value=0.065  Score=39.47  Aligned_cols=55  Identities=15%  Similarity=0.118  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634           8 GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH   63 (79)
Q Consensus         8 G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH   63 (79)
                      +.++...+.+.++.+|..++++.+++++|.... ...+++.+....++.||+++||
T Consensus       169 ~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~-~~l~la~~v~~~g~rtI~VlTK  223 (608)
T 3szr_A          169 IGYKIKTLIKKYIQRQETISLVVVPSNVDIATT-EALSMAQEVDPEGDRTIGILTK  223 (608)
T ss_dssp             HHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC-HHHHHHHHHCSSCCSEEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEeccchhccH-HHHHHHHHHhhcCCceEEEecc
Confidence            356788899999999999999999999998844 4567777765555688888888

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=93.04  E-value=0.0017  Score=41.04  Aligned_cols=51  Identities=18%  Similarity=0.254  Sum_probs=33.1

Q ss_pred             HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-------CCcEEEEEecCHHHH
Q psy5634          18 ALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKD-------GNKTVIITTHYIEEA   68 (79)
Q Consensus        18 al~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~-------~g~tvi~~tH~~~~~   68 (79)
                      +++.+|.+.+||||++++|..+.+.+.+.+.+..++       ...-.|++-++++.+
T Consensus       120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~~~~~D~iivnd~le~a  177 (198)
T 1lvg_A          120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKA  177 (198)
T ss_dssp             EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGSTTTCSEEEECSSHHHH
T ss_pred             EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCceEEEECCCHHHH
Confidence            566677777788889999988777787777665332       123345555565543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=92.94  E-value=0.78  Score=31.85  Aligned_cols=54  Identities=15%  Similarity=0.196  Sum_probs=35.7

Q ss_pred             HHHHHHHHHh--cCCCEEEEeCCCCCCC-H---------------HHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634          11 RRVSFAVALM--HDPELLILDEPTVGVD-P---------------LLRQSIWNHLVQITKDGNKTVIITTHY   64 (79)
Q Consensus        11 qrv~laral~--~~p~~lllDEP~~glD-~---------------~~~~~i~~~l~~~~~~~g~tvi~~tH~   64 (79)
                      +.+.+++.++  .+|+++++|+-++-.. .               ....+++..|..++++.+.+||++.|-
T Consensus       126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv  197 (356)
T 3hr8_A          126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI  197 (356)
T ss_dssp             HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred             HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence            3445566554  4699999998655443 1               122334555667777779999999886

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=92.62  E-value=2.6e-05  Score=52.07  Aligned_cols=56  Identities=18%  Similarity=0.121  Sum_probs=39.9

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHHHH---------HHHHHHHHHHhcCCcEEEEEec
Q psy5634           4 SSRGGQQRRVSFAVALMHDPEL--LILDEPTVGVDPLLRQ---------SIWNHLVQITKDGNKTVIITTH   63 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~--lllDEP~~glD~~~~~---------~i~~~l~~~~~~~g~tvi~~tH   63 (79)
                      .+|+|  ||+++++++..+|++  +|+||.|+.+|...+.         ...+.+.. ..+ |.|.+.+.|
T Consensus       172 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~-~~~-g~t~~~~a~  238 (261)
T 2eyu_A          172 PKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKL-YKQ-GLITLEDAM  238 (261)
T ss_dssp             CCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHH-HHT-TSSCHHHHH
T ss_pred             ecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHH-HHc-CCCCHHHHH
Confidence            36788  899999999999999  9999999999876321         23333333 343 666655544

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=92.34  E-value=0.00027  Score=44.89  Aligned_cols=29  Identities=14%  Similarity=0.139  Sum_probs=24.0

Q ss_pred             CCCHHHHHHHHHH-HHHhcCCCEEEEeCCC
Q psy5634           4 SSRGGQQRRVSFA-VALMHDPELLILDEPT   32 (79)
Q Consensus         4 ~lS~G~kqrv~la-ral~~~p~~lllDEP~   32 (79)
                      .+|+|++|+++++ ++++.++.++++|||.
T Consensus       111 ~~~~g~~~~v~~~~~~~i~eg~~~l~de~~  140 (208)
T 3c8u_A          111 DIAIAGAAEVGPECRVAIIEGNYLLFDAPG  140 (208)
T ss_dssp             TEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred             cCCCCCceEEcCCCcEEEECCceeccCCch
Confidence            5688999999887 7888888888888874

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=92.23  E-value=0.023  Score=41.62  Aligned_cols=46  Identities=15%  Similarity=0.145  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQ   49 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~   49 (79)
                      +.+|+|++|++..++....++.++++||... |++..+..+.+.|.+
T Consensus       182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            4578888999888888999999999999987 899999999888875

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=92.04  E-value=0.53  Score=31.18  Aligned_cols=44  Identities=14%  Similarity=0.218  Sum_probs=30.6

Q ss_pred             hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634          20 MHDPELLILDEPTV-GVDPLLRQSIWNHLVQITKDGNKTVIITTHY   64 (79)
Q Consensus        20 ~~~p~~lllDEP~~-glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~   64 (79)
                      ..+|+++++||+-. .-+....+.++..+...... |..+|+++++
T Consensus        96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~-~~~iii~~~~  140 (324)
T 1l8q_A           96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL-EKQIILASDR  140 (324)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence            35699999999854 23446777888888776544 5566776653

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=91.90  E-value=0.012  Score=39.95  Aligned_cols=47  Identities=6%  Similarity=-0.093  Sum_probs=33.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      +..||+|++||+.++                .+||+...+.+.+++.+.++..+     ++|+.+.+.
T Consensus       160 ~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~  206 (334)
T 1in4_A          160 SGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAE  206 (334)
T ss_dssp             GGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHH
T ss_pred             cccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHH
Confidence            357999999998544                67777788888888888765544     356665443

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=91.41  E-value=0.0011  Score=44.12  Aligned_cols=42  Identities=21%  Similarity=0.343  Sum_probs=33.1

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHHHHHHHHHH
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTV------------GVDPLLRQSIWNHL   47 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~------------glD~~~~~~i~~~l   47 (79)
                      .|||||+|++.+++|+.++|+++  |||+.            --|...+.++++.+
T Consensus       137 ~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~  190 (274)
T 2x8a_A          137 EMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI  190 (274)
T ss_dssp             HHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred             hhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence            58999999999999999999985  99864            23666666666544

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=91.08  E-value=0.14  Score=34.06  Aligned_cols=45  Identities=13%  Similarity=0.073  Sum_probs=25.8

Q ss_pred             CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634          22 DPELLILDEPTVGVD---PLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus        22 ~p~~lllDEP~~glD---~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      .|.++++||+....+   ......+.+.+... ...+.++|++||+.+.
T Consensus       128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~  175 (386)
T 2qby_A          128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEV-NKSKISFIGITNDVKF  175 (386)
T ss_dssp             SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC-CC--EEEEEEESCGGG
T ss_pred             CeEEEEEcChhhhhccCcCHHHHHHhhchhhc-CCCeEEEEEEECCCCh
Confidence            388999999976542   22222333322211 2346889999998754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=90.47  E-value=0.36  Score=29.46  Aligned_cols=42  Identities=10%  Similarity=0.121  Sum_probs=30.3

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634          22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus        22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~   66 (79)
                      +|.++++||.-. +++.....+.+.+.+.  ..+..+|++|++..
T Consensus       126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~  167 (250)
T 1njg_A          126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ  167 (250)
T ss_dssp             SSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred             CceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence            478999999755 7887777777666532  23678888888754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=90.47  E-value=0.22  Score=30.70  Aligned_cols=48  Identities=15%  Similarity=0.277  Sum_probs=24.9

Q ss_pred             hcCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHhcCCcEEEEEec-CHHHH
Q psy5634          20 MHDPELLILDEPTV-GVDPLLRQSIW-NHLVQITKDGNKTVIITTH-YIEEA   68 (79)
Q Consensus        20 ~~~p~~lllDEP~~-glD~~~~~~i~-~~l~~~~~~~g~tvi~~tH-~~~~~   68 (79)
                      +.+++++++||+-. .+++.....++ .++...... +..+|++|+ .++..
T Consensus       113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~-~~~~i~tsn~~~~~l  163 (202)
T 2w58_A          113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFE-NLPTFFTSNFDMQQL  163 (202)
T ss_dssp             HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHT-TCCEEEEESSCHHHH
T ss_pred             hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhC-CCCEEEEcCCCHHHH
Confidence            35678999999932 23333344344 355443333 445566555 55444

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=90.42  E-value=0.28  Score=33.38  Aligned_cols=59  Identities=14%  Similarity=0.141  Sum_probs=39.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH   63 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH   63 (79)
                      +.++.++++..+++..+.+|+++|+.-..+..|... .....++..+...+..+++++|.
T Consensus       154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK  212 (360)
T 3t34_A          154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK  212 (360)
T ss_dssp             CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred             CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence            356778899999999999999888874444445433 34455666654333357777765

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=90.41  E-value=0.79  Score=32.16  Aligned_cols=50  Identities=18%  Similarity=0.177  Sum_probs=34.4

Q ss_pred             HHHHHh--cCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634          15 FAVALM--HDPELLILDEPTVGVDP----------LLRQSIWNHLVQITKDGNKTVIITTHY   64 (79)
Q Consensus        15 laral~--~~p~~lllDEP~~glD~----------~~~~~i~~~l~~~~~~~g~tvi~~tH~   64 (79)
                      .++.+.  .+|+++++|....-...          .....+...|+.++++.+.+||+++|-
T Consensus       301 ~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql  362 (444)
T 2q6t_A          301 RARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQL  362 (444)
T ss_dssp             HHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred             HHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence            344444  47999999987543321          223456777788888789999999983

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=90.40  E-value=4.3e-05  Score=53.32  Aligned_cols=58  Identities=21%  Similarity=0.218  Sum_probs=40.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHH---H-----HHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634           5 SRGGQQRRVSFAVALMHDPEL--LILDEPTVGVDPLL---R-----QSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus         5 lS~G~kqrv~laral~~~p~~--lllDEP~~glD~~~---~-----~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      +|+|  ||+++++++..+|.+  +|+||.|+.+|...   .     +.+.+...+... .|.|.+.+.|..
T Consensus       284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~-~g~t~~~~a~r~  351 (372)
T 2ewv_A          284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK-QGLITLEDAMEA  351 (372)
T ss_dssp             CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTT-TSSSCTTTTTSS
T ss_pred             cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH-CCCCCHHHHHHH
Confidence            4778  889999999999999  99999999988641   1     122333333333 377777666654

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=90.09  E-value=0.37  Score=33.03  Aligned_cols=47  Identities=19%  Similarity=0.275  Sum_probs=36.9

Q ss_pred             CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHH
Q psy5634          22 DPELLILDEPTVGVD---PLLRQSIWNHLVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus        22 ~p~~lllDEP~~glD---~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      .|.++++||--.-++   +.....+.+.+++. ++.|..++++||++..+.
T Consensus       262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~-Rk~g~~~~~~tQ~~~d~~  311 (392)
T 4ag6_A          262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRI-RKYNGSLIVISQNVIDFL  311 (392)
T ss_dssp             TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHG-GGGTCEEEEEESCGGGGG
T ss_pred             ccEEEEEecHHHHhCcCchHHHHHHHHHHHHh-hhhCeEEEEEcCCHHHhh
Confidence            588999999977663   66677777777665 566899999999997654

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=89.90  E-value=1.8  Score=30.01  Aligned_cols=56  Identities=13%  Similarity=0.141  Sum_probs=33.5

Q ss_pred             HHHHHHHHHh--cCCCEEEEeCCCCCCC-----H--------HHHHHHHHH---HHHHHhcCCcEEEEEecCHH
Q psy5634          11 RRVSFAVALM--HDPELLILDEPTVGVD-----P--------LLRQSIWNH---LVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus        11 qrv~laral~--~~p~~lllDEP~~glD-----~--------~~~~~i~~~---l~~~~~~~g~tvi~~tH~~~   66 (79)
                      +.+.+++.++  .+++++++|..++=..     -        ...+.+.+.   |..++++.+.+||+++|-..
T Consensus       139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~  212 (366)
T 1xp8_A          139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVRE  212 (366)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--
T ss_pred             HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEeccc
Confidence            3445566665  4699999999875431     0        111223344   44445677899999988643

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=89.76  E-value=0.41  Score=29.62  Aligned_cols=44  Identities=14%  Similarity=0.357  Sum_probs=28.0

Q ss_pred             cCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634          21 HDPELLILDEPTVGV-DPLLRQSIWNHLVQITKDGNKTVIITTHY   64 (79)
Q Consensus        21 ~~p~~lllDEP~~gl-D~~~~~~i~~~l~~~~~~~g~tvi~~tH~   64 (79)
                      .+|.++++||.-.-- +......+...+..........+|++++.
T Consensus       103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~  147 (242)
T 3bos_A          103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA  147 (242)
T ss_dssp             GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred             cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            568999999964432 23336677787777654422337777763

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.47  E-value=0.51  Score=31.18  Aligned_cols=42  Identities=14%  Similarity=0.294  Sum_probs=31.4

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634          22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus        22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~   66 (79)
                      ++.++++|| ...+++.....+.+.+.+..  ....+|+++++..
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~~  174 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYVT  174 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCchh
Confidence            456999999 78899988888888877653  2456777776654

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=89.34  E-value=0.25  Score=32.56  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=28.3

Q ss_pred             HHHhcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634          17 VALMHDPELLILDEPTVG-VDPLLRQSIWNHLVQITKDGNKTVIITTH   63 (79)
Q Consensus        17 ral~~~p~~lllDEP~~g-lD~~~~~~i~~~l~~~~~~~g~tvi~~tH   63 (79)
                      .++..+|+++|+|||-.- .+.......++.+..... .|..++.++|
T Consensus        79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~-sgidVitT~N  125 (228)
T 2r8r_A           79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA-AGIDVYTTVN  125 (228)
T ss_dssp             HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH-TTCEEEEEEE
T ss_pred             HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc-CCCCEEEEcc
Confidence            345578999999997642 332222334444444433 4778888887

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=88.11  E-value=0.0046  Score=44.58  Aligned_cols=46  Identities=11%  Similarity=0.085  Sum_probs=34.8

Q ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634          17 VALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA   68 (79)
Q Consensus        17 ral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~   68 (79)
                      |||..+ +++|+ ||++.+||. +..+.   .++.+..+.++.+++|+++.+
T Consensus        28 ralt~d-dvlLm-p~~s~~~p~-~v~l~---~eLt~~~~~~iP~vsa~md~~   73 (514)
T 1jcn_A           28 DDLTYN-DFLIL-PGFIDFIAD-EVDLT---SALTRKITLKTPLISSPMDTV   73 (514)
T ss_dssp             SCCCGG-GEEEC-CCCCCSCGG-GCBCC---EESSSSCEESSCEEECCCTTT
T ss_pred             cccccC-cEEec-cCccCCCcc-eeEEE---eeccCCeeEeceEEEEehhhh
Confidence            789999 99999 999999994 33332   234445577889999988765

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=87.30  E-value=0.24  Score=33.28  Aligned_cols=44  Identities=18%  Similarity=0.284  Sum_probs=23.3

Q ss_pred             hcCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhcCCcEEEEEecC
Q psy5634          20 MHDPELLILDEPT-VGVDPLLRQSIWN-HLVQITKDGNKTVIITTHY   64 (79)
Q Consensus        20 ~~~p~~lllDEP~-~glD~~~~~~i~~-~l~~~~~~~g~tvi~~tH~   64 (79)
                      +.++++|++||.- ..+++.....++. ++.....+ +..+|++|+.
T Consensus       212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~-~~~~IitSN~  257 (308)
T 2qgz_A          212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLE-ELPTFFTSNY  257 (308)
T ss_dssp             HHTSSEEEEETCCC------CTTTTHHHHHHHHHHH-TCCEEEEESS
T ss_pred             hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHC-CCcEEEECCC
Confidence            4578999999983 3344444444544 55443233 4567777763

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=87.13  E-value=0.66  Score=30.89  Aligned_cols=50  Identities=16%  Similarity=0.104  Sum_probs=32.5

Q ss_pred             HHHHHh---cCCCEEEEeCCCCCCC--------HH----HHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634          15 FAVALM---HDPELLILDEPTVGVD--------PL----LRQSIWNHLVQITKDGNKTVIITTHY   64 (79)
Q Consensus        15 laral~---~~p~~lllDEP~~glD--------~~----~~~~i~~~l~~~~~~~g~tvi~~tH~   64 (79)
                      .++.++   .+++++++|..++-..        ..    ...++...|..++++.+.+||++.|-
T Consensus       194 ~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~  258 (322)
T 2i1q_A          194 KIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV  258 (322)
T ss_dssp             THHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECE
T ss_pred             HHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECce
Confidence            344444   4689999998764321        11    12445566677777778999998874

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=86.63  E-value=1.8  Score=28.55  Aligned_cols=55  Identities=20%  Similarity=0.187  Sum_probs=33.2

Q ss_pred             HHHHHHHhcCCCEEEEeCCCC-------------CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634          13 VSFAVALMHDPELLILDEPTV-------------GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus        13 v~laral~~~p~~lllDEP~~-------------glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      -.+..+....|.++++||.-+             +........++..+.......+..||.+|+..+.
T Consensus        99 ~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~  166 (301)
T 3cf0_A           99 EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI  166 (301)
T ss_dssp             HHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred             HHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence            344555567899999999632             2333334555555543323346778888887754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=86.39  E-value=1.1  Score=28.92  Aligned_cols=55  Identities=20%  Similarity=0.328  Sum_probs=34.4

Q ss_pred             HHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH---hcCCcEEEEEecCHHH
Q psy5634          13 VSFAVALMHDPELLILDEPTV----------GVDPLLRQSIWNHLVQIT---KDGNKTVIITTHYIEE   67 (79)
Q Consensus        13 v~laral~~~p~~lllDEP~~----------glD~~~~~~i~~~l~~~~---~~~g~tvi~~tH~~~~   67 (79)
                      -.+..+...+|.++++||.-.          +-+......+...+..+.   ...+..+|.+|+..+.
T Consensus       101 ~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~  168 (285)
T 3h4m_A          101 DIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI  168 (285)
T ss_dssp             HHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred             HHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence            344556667889999999732          135556666777666542   2235667778876543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=85.35  E-value=0.0085  Score=42.53  Aligned_cols=23  Identities=22%  Similarity=0.053  Sum_probs=20.9

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEE
Q psy5634           3 ISSRGGQQRRVSFAVALMHDPELLI   27 (79)
Q Consensus         3 ~~lS~G~kqrv~laral~~~p~~ll   27 (79)
                      .+|||||+||  |+|+++.+|++..
T Consensus       292 ~~LSgg~~QR--LaraL~~~p~~~~  314 (418)
T 1p9r_A          292 SSLLGVLAQR--LVRTLCPDCKEPY  314 (418)
T ss_dssp             HHEEEEEEEE--EEEEECTTTCEEE
T ss_pred             HHHHHHHHHH--hhhhhcCCCCccC
Confidence            3699999999  9999999999876

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=84.20  E-value=5.6  Score=28.11  Aligned_cols=54  Identities=13%  Similarity=0.214  Sum_probs=34.8

Q ss_pred             HHHHHHHHh--cCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634          12 RVSFAVALM--HDPELLILDEPTV---G---VDP-LLRQSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus        12 rv~laral~--~~p~~lllDEP~~---g---lD~-~~~~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      .+..++.+.  .+|+++++|--..   +   -+. ....++...|+.++++.+.+||+++|-.
T Consensus       342 i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~  404 (503)
T 1q57_A          342 LLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK  404 (503)
T ss_dssp             HHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred             HHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCC
Confidence            333444443  4699999994432   1   121 3334567777888888899999999954

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=83.76  E-value=0.95  Score=30.14  Aligned_cols=56  Identities=18%  Similarity=0.137  Sum_probs=37.5

Q ss_pred             CCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhcCCc--EEEEEecCHHH
Q psy5634           5 SRGGQQRRVSFAVALM--HDPELLILDEPTVGVDPLL-RQSIWNHLVQITKDGNK--TVIITTHYIEE   67 (79)
Q Consensus         5 lS~G~kqrv~laral~--~~p~~lllDEP~~glD~~~-~~~i~~~l~~~~~~~g~--tvi~~tH~~~~   67 (79)
                      +|+|++   .+++.+.  ..|.++++    +.+|... +..+.+.+.++.+..|.  .+.+++|+..-
T Consensus       101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~  161 (301)
T 1ega_A          101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN  161 (301)
T ss_dssp             CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence            788876   4455555  67889998    7888776 56677777777654443  55566665443

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=83.69  E-value=2.5  Score=25.33  Aligned_cols=43  Identities=12%  Similarity=0.234  Sum_probs=30.0

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634          21 HDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus        21 ~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~   66 (79)
                      .++.++++||. ..+++.....+...+.+.  ..+..+|++|....
T Consensus       101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~--~~~~~~i~~~~~~~  143 (226)
T 2chg_A          101 APFKIIFLDEA-DALTADAQAALRRTMEMY--SKSCRFILSCNYVS  143 (226)
T ss_dssp             CSCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred             cCceEEEEeCh-hhcCHHHHHHHHHHHHhc--CCCCeEEEEeCChh
Confidence            56889999995 556777777777776653  23566777777653

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=83.55  E-value=5  Score=28.01  Aligned_cols=55  Identities=11%  Similarity=0.143  Sum_probs=37.2

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH   63 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH   63 (79)
                      .||..+.+++.-+...+.+.++++.|+|..  +.   .++...++++.++.|..+|++-+
T Consensus       264 ~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~---~~l~~~~~~l~~~~~~~lIvID~  318 (444)
T 2q6t_A          264 QLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TL---MEVRARARRLVSQNQVGLIIIDY  318 (444)
T ss_dssp             GCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BH---HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CH---HHHHHHHHHHHHHcCCCEEEEcC
Confidence            478888888888777777888999888743  33   23444455554445677777754

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=82.38  E-value=0.87  Score=33.26  Aligned_cols=48  Identities=17%  Similarity=0.206  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHh-cCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Q psy5634          10 QRRVSFAVALM-HDP-ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTH   63 (79)
Q Consensus        10 kqrv~laral~-~~p-~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH   63 (79)
                      +|++.+++++. ..| .++|...|++|.|..      +.++.+.+..+.|.+++||
T Consensus       398 ~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvIlTK  447 (503)
T 2yhs_A          398 KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGITLTK  447 (503)
T ss_dssp             HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred             HHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence            56777777663 446 455555688886544      2233444445789999999

>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2

Probab=82.01  E-value=1.8  Score=25.72  Aligned_cols=52  Identities=27%  Similarity=0.115  Sum_probs=34.4

Q ss_pred             HHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHH
Q psy5634          16 AVALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEA   68 (79)
Q Consensus        16 aral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~   68 (79)
                      .+|+-.+.  -+++.|+-+..-|+..+..+.+ |.+.+++.|..|.++|.+...-
T Consensus        47 ~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G  100 (124)
T 1x52_A           47 EKANEAMAIDTLLISDELFRHQDVATRSRYVR-LVDSVKENAGTVRIFSSLHVSG  100 (124)
T ss_dssp             HHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHH-HHHHHHHTTCEEEEECSSSHHH
T ss_pred             HHHHHcCCccEEEechhhhcCCChHHHHHHHH-HHHHHHHcCCEEEEECCCCccH
Confidence            44555454  4566666655557878888888 5565566688888888765443

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=81.93  E-value=8.1  Score=26.81  Aligned_cols=59  Identities=14%  Similarity=0.112  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHH--h--cCCCEEEEeCCCCCCC-----H----------HHHHHHHHH---HHHHHhcCCcEEEEEecCH
Q psy5634           8 GQQRRVSFAVAL--M--HDPELLILDEPTVGVD-----P----------LLRQSIWNH---LVQITKDGNKTVIITTHYI   65 (79)
Q Consensus         8 G~kqrv~laral--~--~~p~~lllDEP~~glD-----~----------~~~~~i~~~---l~~~~~~~g~tvi~~tH~~   65 (79)
                      +++..+.++..+  +  .+|++++.|.-++=..     -          ...+.+-+.   |..++++.+.++|++-|-.
T Consensus        93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~  172 (333)
T 3io5_A           93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY  172 (333)
T ss_dssp             HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred             HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence            444446666665  3  3699999997655431     0          112233333   3445677799999999986


Q ss_pred             H
Q psy5634          66 E   66 (79)
Q Consensus        66 ~   66 (79)
                      .
T Consensus       173 k  173 (333)
T 3io5_A          173 E  173 (333)
T ss_dssp             -
T ss_pred             e
Confidence            5

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=81.15  E-value=2.6  Score=27.27  Aligned_cols=37  Identities=19%  Similarity=0.209  Sum_probs=26.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634          22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY   64 (79)
Q Consensus        22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~   64 (79)
                      +|+++++||--. +++.    +.+.+..+.+. |..||++.|+
T Consensus        89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~-gi~Vil~Gl~  125 (223)
T 2b8t_A           89 ETKVIGIDEVQF-FDDR----ICEVANILAEN-GFVVIISGLD  125 (223)
T ss_dssp             TCCEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEECCS
T ss_pred             CCCEEEEecCcc-CcHH----HHHHHHHHHhC-CCeEEEEecc
Confidence            489999999953 5543    33444555444 8999999993

>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*

Probab=80.62  E-value=6.1  Score=22.65  Aligned_cols=48  Identities=17%  Similarity=0.129  Sum_probs=39.4

Q ss_pred             HhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634          19 LMHDPELLILD-EPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus        19 l~~~p~~lllD-EP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      +..+|+.+++| .....+|......+.+..+++. +.|..++++.-+...
T Consensus        45 ~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~-~~g~~l~l~~~~~~v   93 (130)
T 4dgh_A           45 IQETPQILILRLKWVPFMDITGIQTLEEMIQSFH-KRGIKVLISGANSRV   93 (130)
T ss_dssp             SSSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHH-TTTCEEEEECCCHHH
T ss_pred             hccCCCEEEEECCCCCcccHHHHHHHHHHHHHHH-HCCCEEEEEcCCHHH
Confidence            34678999999 8999999999999998888774 558888888766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	79
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-21
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	8e-20
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	2e-18
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-17
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	2e-17
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	2e-16
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	2e-16
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	2e-16
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	3e-16
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	5e-16
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	8e-16
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	8e-16
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	1e-15
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	7e-15
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-14
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	3e-14
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	8e-13
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	1e-10
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-10
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	3e-10
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	6e-10
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	6e-09
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	7e-05
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	3e-04

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 81.4 bits (201), Expect = 2e-21
 Identities = 25/69 (36%), Positives = 42/69 (60%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQQ+RV+ A AL ++P +++ D+PT  +D    + I   L ++ ++  KTV++ TH I 
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207

Query: 67  EARQAHTVI 75
            AR    +I
Sbjct: 208 VARFGERII 216

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 77.1 bits (190), Expect = 8e-20
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A A++ +P++L++DEP   +D  LR ++   + ++ +    T I  TH   
Sbjct: 139 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 198

Query: 67  EARQ-AHTVI 75
           EA      + 
Sbjct: 199 EAMTMGDRIA 208

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 73.4 bits (180), Expect = 2e-18
 Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+Q+ ++   ALM  P+LL++DEP++G+ P+L   ++  + +I ++G  T+++      
Sbjct: 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG-TTILLVEQNAL 200

Query: 67  EARQ-AHTVI 75
            A + AH   
Sbjct: 201 GALKVAHYGY 210

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 71.4 bits (175), Expect = 1e-17
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+ D  +LILDE T  +D    ++I   L ++ K  N+T ++  H + 
Sbjct: 155 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLS 212

Query: 67  EARQAHTVI 75
              QA  ++
Sbjct: 213 TIEQADEIV 221

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 71.4 bits (175), Expect = 2e-17
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R+S A   +++P +LILDE T  +D      I   L  ++K  ++T +I  H + 
Sbjct: 157 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLS 214

Query: 67  EARQAHTVI 75
               A  ++
Sbjct: 215 TITHADKIV 223

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 68.4 bits (167), Expect = 2e-16
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+   A++  P++ ++DEP   +D  LR  +   L ++ +    T I  TH   
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201

Query: 67  EARQ-AHTVI 75
           EA      + 
Sbjct: 202 EAMTMGDRIA 211

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 68.4 bits (167), Expect = 2e-16
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A A + +P++L+LDE T  +D      +   L  + K   +T ++  H + 
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLS 199

Query: 67  EARQAHTVI 75
               A  + 
Sbjct: 200 TIVDADKIY 208

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 68.5 bits (167), Expect = 2e-16
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ + V    ALM +P+++++DEP  GV P L   I+NH++++   G  T +I  H ++
Sbjct: 153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG-ITFLIIEHRLD 211

Query: 67  EARQ-AHTVI 75
                   + 
Sbjct: 212 IVLNYIDHLY 221

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 67.3 bits (164), Expect = 3e-16
 Identities = 15/61 (24%), Positives = 30/61 (49%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
           G  RRV  A  L+ + E+ +LD+P V +D   +  +   +++I K+    +I +   +  
Sbjct: 129 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSY 188

Query: 68  A 68
            
Sbjct: 189 C 189

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 67.2 bits (164), Expect = 5e-16
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+ A AL  +P++L+ DE T  +DP   +SI   L  I +    T+++ TH ++
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD 202

Query: 67  EARQ-AHTVI 75
             ++    V 
Sbjct: 203 VVKRICDCVA 212

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 66.8 bits (163), Expect = 8e-16
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
           GQQ+RVS A AL  +P++L+ DEPT  +DP L   +   + Q+ ++G KT+++ TH +  
Sbjct: 153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG-KTMVVVTHEMGF 211

Query: 68  ARQ-AHTVI 75
           AR  +  VI
Sbjct: 212 ARHVSSHVI 220

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.2 bits (164), Expect = 8e-16
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ+ R+S A A+  D +L +LD P   +D    + ++   V       KT I+ T  +E
Sbjct: 161 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN-KTRILVTSKME 219

Query: 67  EARQAHTVI 75
             R+A  ++
Sbjct: 220 HLRKADKIL 228

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 66.2 bits (161), Expect = 1e-15
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
           G  R++  A ALM +P L ILDEPT G+D L  + +   L Q +++   T+++++H + E
Sbjct: 137 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLE 195

Query: 68  ARQ 70
              
Sbjct: 196 VEF 198

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 64.2 bits (156), Expect = 7e-15
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++R++ A AL+++P++LI DE T  +D      I  ++ +I K   +TVII  H + 
Sbjct: 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLS 199

Query: 67  EARQAHTVI 75
             + A  +I
Sbjct: 200 TVKNADRII 208

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (153), Expect = 2e-14
 Identities = 19/69 (27%), Positives = 39/69 (56%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++ V+ A AL+  P +LILD+ T  +D   +  +   L +  +  +++V++ T ++ 
Sbjct: 154 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS 213

Query: 67  EARQAHTVI 75
              QA  ++
Sbjct: 214 LVEQADHIL 222

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 62.3 bits (151), Expect = 3e-14
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GGQ++RV+    L+ +P + +LDEP   +D  LR  +   + ++ K   +T+I  TH   
Sbjct: 133 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 192

Query: 67  EARQ-AHTVI 75
           EA   A  ++
Sbjct: 193 EAMTLADKIV 202

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 58.4 bits (141), Expect = 8e-13
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 7   GGQQRRVSFAVALMH-------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVI 59
           GG+ +RV  A  ++          +LL+LDEP   +D   + ++   L  + + G   ++
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQG-LAIV 186

Query: 60  ITTHYIEEARQ-AHTVI 75
           +++H +    + AH   
Sbjct: 187 MSSHDLNHTLRHAHRAW 203

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 52.8 bits (126), Expect = 1e-10
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
           GG+Q+RV+ A AL+ +P++L+LDEP   +DP  +++    L  + K    TV+  TH   
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189

Query: 67  EARQ-AHTVI 75
           EAR  A  + 
Sbjct: 190 EARIMADRIA 199

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 50.9 bits (121), Expect = 6e-10
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
            QQ+RV+ A AL+ DP LL+LDEP   +D  +R S    + ++      T+++ +H   +
Sbjct: 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203

Query: 68  ARQ-AHTVI 75
               A  V 
Sbjct: 204 IFAIADRVG 212

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 48.1 bits (114), Expect = 6e-09
 Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 8   GQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE 67
           G+++RV+ A AL+  P LL+LDEP   VD   +  +   L  + ++ +  ++  TH + E
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189

Query: 68  ARQ-AHTVI 75
           A   A  V 
Sbjct: 190 AAMLADEVA 198

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 36.5 bits (83), Expect = 7e-05
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 7   GGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE 66
                  ++  A     +++I+DE   G   L  +   + + QI  D N  V+ T    +
Sbjct: 84  AIPILERAYREAKKDRRKVIIIDEI--GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRD 141

Query: 67  EARQAHTVI 75
                  + 
Sbjct: 142 VHPLVKEIR 150

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (79), Expect = 3e-04
 Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 15  FAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV 74
           FA+         +LDE    +D    Q I  ++ +  ++ +   I+ +       ++  +
Sbjct: 347 FAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRH-RNPDLQFIVISLKNTMFEKSDAL 405

Query: 75  I 75
           +
Sbjct: 406 V 406

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	79
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.97
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.97
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.97
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.97
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.97
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.97
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.97
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.96
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.96
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.96
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.96
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.96
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.96
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.95
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.95
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.95
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.95
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.95
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.94
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.91
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.86
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.73
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.56
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.12
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.0
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.65
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.94
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.57
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.03
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.48
d2vgna3	104	Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}	85.92
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	83.52
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	80.57

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=1.9e-32  Score=181.57  Aligned_cols=75  Identities=33%  Similarity=0.505  Sum_probs=71.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      |.+|||||||||+|||||+.+|+++||||||+|||+.++..+++.+.++.++.|.|+|++|||+++++.||+++.
T Consensus       143 p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~  217 (230)
T d1l2ta_         143 PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIY  217 (230)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEE
T ss_pred             hhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEE
Confidence            678999999999999999999999999999999999999999999999988789999999999998877999864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.97  E-value=2.4e-31  Score=177.26  Aligned_cols=76  Identities=26%  Similarity=0.405  Sum_probs=71.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +|++|||||||||+|||||+.+|+++||||||+|||+..+..+++.|.++.++.|.|||++|||++++.. ||+++.
T Consensus       136 ~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~v  212 (240)
T d1g2912         136 KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAV  212 (240)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999987779999999999999987 898764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.97  E-value=3.1e-31  Score=175.71  Aligned_cols=76  Identities=34%  Similarity=0.507  Sum_probs=71.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|+++||||||+||||..+..+++.+.++.++.|.|||++|||++++.. ||+++.
T Consensus       124 ~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~v  200 (229)
T d3d31a2         124 NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAV  200 (229)
T ss_dssp             CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             ChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEE
Confidence            4678999999999999999999999999999999999999999999999987779999999999999987 898764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=2.1e-31  Score=177.43  Aligned_cols=76  Identities=28%  Similarity=0.424  Sum_probs=71.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|+++||||||+||||..+.++++.+.+++++.|.|+|++|||++++.. ||+++.
T Consensus       133 ~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~v  209 (239)
T d1v43a3         133 YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV  209 (239)
T ss_dssp             CTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             ChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE
Confidence            4789999999999999999999999999999999999999999999999987779999999999999987 898764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.9e-31  Score=177.01  Aligned_cols=76  Identities=29%  Similarity=0.447  Sum_probs=59.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      ++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++.+.++.++.|.|+|++|||++++.. ||+++.
T Consensus       127 ~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~v  203 (232)
T d2awna2         127 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV  203 (232)
T ss_dssp             -------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEE
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            4679999999999999999999999999999999999999999999999988789999999999999987 898764

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.8e-31  Score=176.86  Aligned_cols=76  Identities=30%  Similarity=0.463  Sum_probs=71.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      .|.+|||||||||+|||||+.+|++||+||||+|||+.++..+++.|.++.++.|.|||++|||++++.. ||+++.
T Consensus       137 ~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~v  213 (240)
T d3dhwc1         137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAV  213 (240)
T ss_dssp             CBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEE
T ss_pred             ChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEE
Confidence            3689999999999999999999999999999999999999999999999987779999999999999987 898764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=3e-31  Score=176.96  Aligned_cols=76  Identities=30%  Similarity=0.397  Sum_probs=71.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +|.+|||||||||+|||||+.+|+++|+||||+|||+..+..+++.+.++.++.|.|+|++|||++++.. ||+++.
T Consensus       137 ~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~v  213 (242)
T d1oxxk2         137 FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGV  213 (242)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE
T ss_pred             ChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEE
Confidence            4679999999999999999999999999999999999999999999999977779999999999999976 898764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=7.4e-31  Score=174.89  Aligned_cols=76  Identities=30%  Similarity=0.412  Sum_probs=71.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           1 MEISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         1 ~~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      .+.+|||||||||+|||||+.+|+++||||||+|||+..+..+++.+++++++.|.|+|++|||++++.. ||+++.
T Consensus       123 ~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~v  199 (240)
T d2onka1         123 KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV  199 (240)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEE
T ss_pred             ChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999999999987779999999999999987 898764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.96  E-value=3e-30  Score=171.56  Aligned_cols=74  Identities=27%  Similarity=0.503  Sum_probs=69.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +++|||||||||+|||||+.+|+++||||||+||||..+.++++.+++++++ |.|||++||+++++.. ||+++.
T Consensus       137 ~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~~tH~l~~~~~~~drv~v  211 (240)
T d1ji0a_         137 GGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNALGALKVAHYGYV  211 (240)
T ss_dssp             SSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999999999998665 9999999999999876 898753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=4.8e-30  Score=172.16  Aligned_cols=74  Identities=38%  Similarity=0.592  Sum_probs=69.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      |.+|||||||||+|||||+.+|+++||||||+|||+..+.++++.|+++.++ |.|||+||||++++.. ||+++.
T Consensus       147 p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~-g~til~vtHdl~~~~~~adri~v  221 (258)
T d1b0ua_         147 PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIF  221 (258)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEE
T ss_pred             cccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhccc-CCceEEEeCCHHHHHHhCCEEEE
Confidence            6789999999999999999999999999999999999999999999999765 8999999999999987 898764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.4e-30  Score=170.29  Aligned_cols=75  Identities=25%  Similarity=0.357  Sum_probs=70.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||++||+.+...+++.+.++.++.|+|+|+|||+++.+..+|+|+.
T Consensus       149 ~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~v  223 (251)
T d1jj7a_         149 GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILF  223 (251)
T ss_dssp             CSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEE
T ss_pred             CccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999998876668999999999999988999864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=3.3e-29  Score=166.35  Aligned_cols=74  Identities=30%  Similarity=0.430  Sum_probs=69.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+||||||||++|||||+.+|+++||||||+||||..+..+++++.++.++ |.|||++||+++++.. ||+++.
T Consensus       131 ~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~-g~tii~~tH~l~~~~~~~drv~v  205 (238)
T d1vpla_         131 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIAL  205 (238)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEE
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence            5689999999999999999999999999999999999999999999998654 8999999999999986 898753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=1.5e-29  Score=169.17  Aligned_cols=74  Identities=28%  Similarity=0.507  Sum_probs=68.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~i~~   76 (79)
                      +.+|||||||||+|||||+.+|+++||||||+|||+..+.++++.+.++.+ .|.|||++|||++++.. ||+++.
T Consensus       148 ~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vsHdl~~~~~~~Drv~v  222 (254)
T d1g6ha_         148 AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIVLNYIDHLYV  222 (254)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCSTTGGGCSEEEE
T ss_pred             hhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999854 59999999999999876 899764

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=5.2e-29  Score=166.57  Aligned_cols=73  Identities=32%  Similarity=0.503  Sum_probs=68.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||++||+.+...+++.|.++.+  ++|+|+|||+++.+..+|+|+.
T Consensus       150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~~D~v~v  222 (253)
T d3b60a1         150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEQADEIVV  222 (253)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGTTTCSEEEE
T ss_pred             CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999999853  7899999999999888999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=9.3e-29  Score=164.50  Aligned_cols=73  Identities=33%  Similarity=0.532  Sum_probs=68.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||++||+.+...+++.+.++.+  ++|+|+|||+++.+..+|+++.
T Consensus       137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~~D~i~v  209 (241)
T d2pmka1         137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTVKNADRIIV  209 (241)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSGGGGTTSSEEEE
T ss_pred             CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEEEECCHHHHHhCCEEEE
Confidence            568999999999999999999999999999999999999999999998853  7899999999999888999864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.95  E-value=2.8e-29  Score=167.00  Aligned_cols=73  Identities=25%  Similarity=0.448  Sum_probs=68.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||++||+.+...+++.+.++.+  |+|+|++||+++.+..||+++.
T Consensus       137 g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~~D~i~v  209 (242)
T d1mv5a_         137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLSTIVDADKIYF  209 (242)
T ss_dssp             SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCSHHHHHHCSEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHHhCCEEEE
Confidence            457999999999999999999999999999999999999999999999853  7999999999999988999864

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.4e-28  Score=160.57  Aligned_cols=74  Identities=22%  Similarity=0.370  Sum_probs=67.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh-hcc
Q psy5634           2 EISSRGGQQRRVSFAVALMH-------DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ-AHT   73 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~-------~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~-~d~   73 (79)
                      +.+||||||||++|||||++       +|+++||||||+|||+..+..++++++++.+ .|.|||++|||++++.. ||+
T Consensus       123 ~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHdl~~~~~~~dr  201 (231)
T d1l7vc_         123 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHDLNHTLRHAHR  201 (231)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCCHHHHHHHCSB
T ss_pred             hhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHCCE
Confidence            46899999999999999997       7799999999999999999999999999865 48999999999999876 888


Q ss_pred             eec
Q psy5634          74 VID   76 (79)
Q Consensus        74 i~~   76 (79)
                      ++.
T Consensus       202 i~v  204 (231)
T d1l7vc_         202 AWL  204 (231)
T ss_dssp             CCB
T ss_pred             EEE
Confidence            753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.95  E-value=5.2e-28  Score=161.97  Aligned_cols=73  Identities=29%  Similarity=0.475  Sum_probs=67.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||++||+.+...+++.+.++.+  ++|+|+|||+++.+..+|+++.
T Consensus       152 g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~~~~~~~D~ii~  224 (255)
T d2hyda1         152 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLSTITHADKIVV  224 (255)
T ss_dssp             GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGTTTCSEEEE
T ss_pred             CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhCCEEEE
Confidence            457999999999999999999999999999999999999999999998753  7899999999999988999864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.4e-27  Score=160.34  Aligned_cols=74  Identities=30%  Similarity=0.443  Sum_probs=65.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcceec
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVID   76 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~~   76 (79)
                      +.+||||||||++|||||+++|+++||||||++||+.+...+++.+..... .++|+|++||+++.+..||+|+.
T Consensus       156 ~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~~~~l~~aDrI~v  229 (281)
T d1r0wa_         156 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSKMEHLRKADKILI  229 (281)
T ss_dssp             CTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEEECSCHHHHHTCSEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEechHHHHHhCCEEEE
Confidence            457999999999999999999999999999999999999998876444333 47899999999999888999864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.91  E-value=1.2e-25  Score=145.51  Aligned_cols=70  Identities=21%  Similarity=0.361  Sum_probs=61.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhcce
Q psy5634           2 EISSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTV   74 (79)
Q Consensus         2 ~~~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i   74 (79)
                      +.+||||||||++|||||+.+|+++||||||+|||+.++.++++.+.++.++.+.++|.++|++.   .||.+
T Consensus       123 ~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l~---~~D~~  192 (200)
T d1sgwa_         123 LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS---YCDVN  192 (200)
T ss_dssp             GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT---TSSEE
T ss_pred             cCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechhh---hcchh
Confidence            46899999999999999999999999999999999999999999999988776777777777654   35553

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=8.1e-15  Score=99.04  Aligned_cols=72  Identities=14%  Similarity=0.179  Sum_probs=60.8

Q ss_pred             CCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           3 ISSRGGQQRRVSFAVAL----MHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         3 ~~lS~G~kqrv~laral----~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      ..+|||||.++++|..+    ..++++++||||+++||+.....+.+.|.+.. ..+.-+|++||++..+..+|+++
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~-~~~~Q~I~iTH~~~~~~~ad~~~  406 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR-NPDLQFIVISLKNTMFEKSDALV  406 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC-BTTBEEEEECSCHHHHTTCSEEE
T ss_pred             hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHhcccEE
Confidence            45899999998876543    45778999999999999999999999998874 34567999999999998888864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=1.3e-10  Score=75.90  Aligned_cols=71  Identities=20%  Similarity=0.204  Sum_probs=60.2

Q ss_pred             CCCCHHHHHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHhhccee
Q psy5634           3 ISSRGGQQRRVSFAVA----LMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQAHTVI   75 (79)
Q Consensus         3 ~~lS~G~kqrv~lara----l~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~~d~i~   75 (79)
                      ..+|+|+|+...++..    ...+|.++++|||-++|+|.....+.+.+++..+  +.-||++||.+..+..+|+++
T Consensus       218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp~~~~~~d~~~  292 (308)
T d1e69a_         218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNKIVMEAADLLH  292 (308)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCTTGGGGCSEEE
T ss_pred             hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHHhcccEE
Confidence            4689999998877664    4456799999999999999999999999998754  578999999999888888753

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.00  E-value=1.2e-10  Score=70.72  Aligned_cols=62  Identities=18%  Similarity=0.130  Sum_probs=49.1

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634           4 SSRGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus         4 ~lS~G~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      ++|+|++++.++++++..+|+++++|||....  .....+...+.+..++.+.++|+++|+...
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~il~~~h~~~~  142 (178)
T d1ye8a1          81 EELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVNVVATIPIRDV  142 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSEEEEECCSSCC
T ss_pred             hhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccCCCEEEEEEccHHH
Confidence            46899999999999999999999999984433  334555666676666668999999998643

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.94  E-value=2.1e-05  Score=50.20  Aligned_cols=62  Identities=19%  Similarity=0.280  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634           9 QQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus         9 ~kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      +-+++.-+.--+.+..++|+||++.|-++.....+...+.+...+.+..++++||..+....
T Consensus       101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l  162 (224)
T d1ewqa2         101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL  162 (224)
T ss_dssp             HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred             hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhhh
Confidence            44455544445667789999999999999998887666665544457889999999876553

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=0.00014  Score=46.54  Aligned_cols=60  Identities=15%  Similarity=0.148  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEecCHHHHH
Q psy5634          10 QRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH-LVQITKDGNKTVIITTHYIEEAR   69 (79)
Q Consensus        10 kqrv~laral~~~p~~lllDEP~~glD~~~~~~i~~~-l~~~~~~~g~tvi~~tH~~~~~~   69 (79)
                      -+++.-+.--+.+..++|+||+..|-++.....+... +..+..+.+..++++||..+...
T Consensus       108 ~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         108 MTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             HHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             HHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence            3444433344667789999999999999999887655 44555555678999999876543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.03  E-value=0.14  Score=31.37  Aligned_cols=49  Identities=12%  Similarity=0.131  Sum_probs=35.5

Q ss_pred             HHhcCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHH
Q psy5634          18 ALMHDPELLILDEPTV-----GVDPLLRQSIWNHLVQITKDGNKTVIITTHYIE   66 (79)
Q Consensus        18 al~~~p~~lllDEP~~-----glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~   66 (79)
                      .-..+|+++++|--.+     --|......++..+..+++..+.++|++.|--.
T Consensus       128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K  181 (274)
T d1nlfa_         128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASK  181 (274)
T ss_dssp             HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred             HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhccc
Confidence            3457999999995432     236666677888888888777899999999543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.48  E-value=0.27  Score=30.22  Aligned_cols=46  Identities=15%  Similarity=0.266  Sum_probs=30.3

Q ss_pred             hcCCCEEEEeC-----CCCCC--CHHHHHHHHHHHHHHHhcCCcEEEEEecCH
Q psy5634          20 MHDPELLILDE-----PTVGV--DPLLRQSIWNHLVQITKDGNKTVIITTHYI   65 (79)
Q Consensus        20 ~~~p~~lllDE-----P~~gl--D~~~~~~i~~~l~~~~~~~g~tvi~~tH~~   65 (79)
                      ..+|+++++|=     |..+-  +......+...|++++++.+.+||+++|-.
T Consensus       145 ~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~  197 (277)
T d1cr2a_         145 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK  197 (277)
T ss_dssp             TTCCSEEEEEEEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred             ccCcceEEEcccccccccccccchhHHHHHHHHHHHHHhhhccccceeecccc
Confidence            45799999993     22221  113345567778888888899999999953

>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: ERF1/Dom34 C-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=85.92  E-value=0.97  Score=24.74  Aligned_cols=53  Identities=9%  Similarity=0.066  Sum_probs=37.8

Q ss_pred             HHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHHHHh
Q psy5634          17 VALMHDP--ELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEEARQ   70 (79)
Q Consensus        17 ral~~~p--~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~~~~   70 (79)
                      .|+-.+.  .++|.|+-+..-|+..++.+.+++... ++.|..|.++|.+.+.-.+
T Consensus        30 ~A~e~gAv~~LlIsd~l~r~~~~~~r~~~~~l~~~~-~~~g~~v~iiS~~~~~G~q   84 (104)
T d2vgna3          30 KAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSV-ESNGGKALVLSTLHSLGEE   84 (104)
T ss_dssp             HHHHTTCEEEEEEETTGGGSSCHHHHHHHHHHHHHH-HHTTCEEEEECTTSHHHHH
T ss_pred             HHHHhCCceEEEEecccccccccchHHHHHHHHHHH-HhcCCEEEEEcCCChhHHH
Confidence            3444443  688899999999999999888877665 4556777777776655443

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=83.52  E-value=1.1  Score=26.52  Aligned_cols=44  Identities=16%  Similarity=0.127  Sum_probs=32.7

Q ss_pred             cCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecC
Q psy5634          21 HDPELLILDEP---TVGVDPLLRQSIWNHLVQITKDGNKTVIITTHY   64 (79)
Q Consensus        21 ~~p~~lllDEP---~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~   64 (79)
                      .+|++++.|.-   +.+.+..........+.+++++.+.+++++.|-
T Consensus       115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~  161 (242)
T d1tf7a2         115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTS  161 (242)
T ss_dssp             TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee
Confidence            47999999953   445566666666677777777778999998884

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=80.57  E-value=0.83  Score=27.62  Aligned_cols=43  Identities=9%  Similarity=0.094  Sum_probs=32.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEecCHHH
Q psy5634          22 DPELLILDEPTVGVDPLLRQSIWNHLVQITKDGNKTVIITTHYIEE   67 (79)
Q Consensus        22 ~p~~lllDEP~~glD~~~~~~i~~~l~~~~~~~g~tvi~~tH~~~~   67 (79)
                      +.+++++||.- .|+......+.+.+.+..  .+..+|++|++.+-
T Consensus       115 ~~kviiIde~d-~l~~~~q~~Llk~lE~~~--~~~~~il~tn~~~~  157 (239)
T d1njfa_         115 RFKVYLIDEVH-MLSRHSFNALLKTLEEPP--EHVKFLLATTDPQK  157 (239)
T ss_dssp             SSEEEEEETGG-GSCHHHHHHHHHHHHSCC--TTEEEEEEESCGGG
T ss_pred             CCEEEEEECcc-cCCHHHHHHHHHHHhcCC--CCeEEEEEcCCccc
Confidence            34699999985 488888888877776542  35788889988754