Psyllid ID: psy5641

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MVQKVSLLGLHNNKSNNMCSTYDHSMSCRRQAYGLVSLSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKKYKTIKVKTPK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccEcccccccccccccccccccccHHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHcccHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccHHHHHHHHHccHHHHHHHHcccccEEccccccc
Coil and Loop (DISEMBL)
mvqkvsllglhnnksnnmcstydhsmscrrqayglvslssndirvlppkpllfangdkvpgviglrnhgntcFINAILQCLSHTDILAEYFVLdqykidmsrrnkfnskkygtkgeVTEQLAVLLKSIWScsynpdisnQFKVIIDKygtqyrgnnqHDAQEFLMWLLDKVHEDLNTATKKKYKTIKVKTPK
Flexible Loop (DISEMBL)
mvqkvsllglhnnksnNMCSTYDHSMSCRRQAYGLVSLSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIdmsrrnkfnskkygtkgevTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLntatkkkyktikvktpk
Low Complexity Region (SEG)
MVQKVSLLGLHNNKSNNMCSTYDHSMSCRRQAYGLVSLSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNtatkkkyktikvktpk
Disordered region (IsUnstruct)
******************CSTYDHSMSCRRQAYGLVSLSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTA**************
Disordered Region (DISOPRED)
*************************************************************VIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATK************
Disordered Region (DISEMBL)
MVQKVSLLGLHNNKSNNMCSTYDHSMSCRRQAYGLVSLSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKKYKTIKVKTPK
Disordered Region (DISPRO)
*VQKVSLLGLHNNKSNNMCST**************************************PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKKYKTIK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVQKVSLLGLHNNKSNNMCSTYDHSMSCRRQAYGLVSLSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKKYKTIKVKTPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q70EL4	1123	Ubiquitin carboxyl-termin	yes	N/A	0.635	0.108	0.474	1e-34
Q70CQ4	1352	Ubiquitin carboxyl-termin	no	N/A	0.630	0.089	0.544	1e-34
Q8BUM9	1132	Ubiquitin carboxyl-termin	no	N/A	0.572	0.097	0.508	9e-34
Q80U87	1080	Ubiquitin carboxyl-termin	no	N/A	0.703	0.125	0.420	5e-25
B2GUZ1	961	Ubiquitin carboxyl-termin	no	N/A	0.770	0.154	0.354	6e-25
P40818	1118	Ubiquitin carboxyl-termin	no	N/A	0.713	0.122	0.418	8e-25
P35123	962	Ubiquitin carboxyl-termin	no	N/A	0.656	0.130	0.416	1e-24
A6QR55	963	Ubiquitin carboxyl-termin	no	N/A	0.640	0.127	0.429	3e-24
Q5RCD3	963	Ubiquitin carboxyl-termin	no	N/A	0.640	0.127	0.429	3e-24
Q13107	963	Ubiquitin carboxyl-termin	no	N/A	0.640	0.127	0.429	3e-24

>sp|Q70EL4|UBP43_HUMAN Ubiquitin carboxyl-terminal hydrolase 43 OS=Homo sapiens GN=USP43 PE=1 SV=2

 Score =  146 bits (368), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/139 (47%), Positives = 94/139 (67%), Gaps = 17/139 (12%)

Query: 47  PPKP-----LLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMS 101
           PP P     L   +G + PG  GL+NHGNTCF+NA++QCLS+TD+LAE+  L +Y+    
Sbjct: 80  PPGPQPQLQLPAGDGARPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPG 139

Query: 102 RRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQ 161
           R             EVTEQLA L++++W+  Y P +S +FK  + KYG+Q++GN+QHDA 
Sbjct: 140 R------------AEVTEQLAALVRALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDAL 187

Query: 162 EFLMWLLDKVHEDLNTATK 180
           EFL+WLLD+VHEDL  +++
Sbjct: 188 EFLLWLLDRVHEDLEGSSR 206

May recognize and hydrolyze the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q70CQ4|UBP31_HUMAN Ubiquitin carboxyl-terminal hydrolase 31 OS=Homo sapiens GN=USP31 PE=2 SV=2

 Score =  145 bits (367), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/125 (54%), Positives = 87/125 (69%), Gaps = 4/125 (3%)

Query: 61  GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGT----KGE 116
           GV GLRNHGNTCF+NA LQCLS+T++ AEY  L QY+      +    +  G     +GE
Sbjct: 126 GVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSPDPEQPAGRGAQGQGE 185

Query: 117 VTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176
           VTEQLA L++++W+  Y P  S  FK I+ K   QYRGN+QHDAQEFL+WLLD+VHEDLN
Sbjct: 186 VTEQLAHLVRALWTLEYTPQHSRDFKTIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLN 245

Query: 177 TATKK 181
            + K+
Sbjct: 246 HSVKQ 250

May recognize and hydrolyze the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8BUM9|UBP43_MOUSE Ubiquitin carboxyl-terminal hydrolase 43 OS=Mus musculus GN=Usp43 PE=2 SV=2

 Score =  143 bits (360), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 62/122 (50%), Positives = 87/122 (71%), Gaps = 12/122 (9%)

Query: 54  ANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGT 113
            +G + PG  GL+NHGNTCF+NA++QCLS+TD+LAE+  L +Y+    R           
Sbjct: 92  GDGARPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGR----------- 140

Query: 114 KGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
             EVTEQLA L++++W+  Y P +S +FK  + KYG+Q++GN+QHDA EFL+WLLD+VHE
Sbjct: 141 -AEVTEQLAALVRALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHE 199

Query: 174 DL 175
           DL
Sbjct: 200 DL 201

May recognize and hydrolyze the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1 SV=2

 Score =  114 bits (284), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/145 (42%), Positives = 90/145 (62%), Gaps = 10/145 (6%)

Query: 38  LSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYK 97
           LS++ IR L P   +F  G   P + GLRN GNTC++N+ILQCL +   LA+YF  + Y+
Sbjct: 719 LSASQIRNLNP---VF--GGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQ 773

Query: 98  IDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQ 157
            D++R N       G KGEV E+  +++K++W+  Y       FKV I K   Q+ G++Q
Sbjct: 774 DDINRSNLL-----GHKGEVAEEFGIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQ 828

Query: 158 HDAQEFLMWLLDKVHEDLNTATKKK 182
            D+QE L++L+D +HEDLN A  +K
Sbjct: 829 QDSQELLLFLMDGLHEDLNKADNRK 853

Hydrolase that can remove conjugated ubiquitin from proteins and therefore plays an important regulatory role at the level of protein turnover by preventing degradation. Converts both 'Lys-48' an 'Lys-63'-linked ubiquitin chains. Catalytic activity is enhanced in the M phase. Involved in cell proliferation. Required to enter into S phase in response to serum stimulation. May regulate T-cell anergy mediated by RNF128 via the formation of a complex containing RNF128 and OTUB1. Probably regulates the stability of STAM2 and RASGRF1. Regulates endosomal ubiquitin dynamics, cargo sorting, membrane traffic at early endosomes, and maintenance of ESCRT-0 stability. The level of protein ubiquitination on endosomes is essential for maintaining the morphology of the organelle. Deubiquitinates EPS15 and controles tyrosine kinase stability. Removes conjugated ubiquitin from EGFR thus regulating EGFR degradation and downstream MAPK signaling. Involved in acrosome biogenesis through interaction with the spermatid ESCRT-0 complex and microtubules. Deubiquitinates BIRC6/bruce and KIF23/MKLP1.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus GN=Usp4 PE=1 SV=1

 Score =  113 bits (283), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 91/175 (52%), Gaps = 27/175 (15%)

Query: 9   GLHNNKSNNMCSTYDHSMSCRRQAYGLVSLSSNDIRVLPPKPLLFANGDKVPGVIGLRNH 68
           G+HN+  +   + +  S +C+                 PP P +       PG+ GL N 
Sbjct: 270 GMHNSGVSRGGAGFSASYNCQE----------------PPSPHI------QPGLCGLGNL 307

Query: 69  GNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSI 128
           GNTCF+N+ LQCLS+T  L EYF+ D+Y+ +++R N       G KGE+ E  A L+K +
Sbjct: 308 GNTCFMNSALQCLSNTGPLTEYFLKDEYEAEINRDNPL-----GMKGEIAEAYAELIKQM 362

Query: 129 WSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKKY 183
           WS          FK  + ++  Q+ G  Q D+QE L ++LD +HEDLN   KK Y
Sbjct: 363 WSGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPY 417

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1 SV=1

 Score =  113 bits (282), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 92/148 (62%), Gaps = 11/148 (7%)

Query: 38  LSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYK 97
           LS++ IR L P   +F  G   P + GLRN GNTC++N+ILQCL +   LA+YF  + Y+
Sbjct: 757 LSASQIRNLNP---VF--GGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQ 811

Query: 98  IDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQ 157
            D++R N       G KGEV E+  +++K++W+  Y       FK+ I K   Q+ G +Q
Sbjct: 812 DDINRSNLL-----GHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ 866

Query: 158 HDAQEFLMWLLDKVHEDLNTA-TKKKYK 184
            D+QE L++L+D +HEDLN A  +K+YK
Sbjct: 867 QDSQELLLFLMDGLHEDLNKADNRKRYK 894

Hydrolase that can remove conjugated ubiquitin from proteins and therefore plays an important regulatory role at the level of protein turnover by preventing degradation. Converts both 'Lys-48' an 'Lys-63'-linked ubiquitin chains. Catalytic activity is enhanced in the M phase. Involved in cell proliferation. Required to enter into S phase in response to serum stimulation. May regulate T-cell anergy mediated by RNF128 via the formation of a complex containing RNF128 and OTUB1. Probably regulates the stability of STAM2 and RASGRF1. Regulates endosomal ubiquitin dynamics, cargo sorting, membrane traffic at early endosomes, and maintenance of ESCRT-0 stability. The level of protein ubiquitination on endosomes is essential for maintaining the morphology of the organelle. Deubiquitinates EPS15 and controles tyrosine kinase stability. Removes conjugated ubiquitin from EGFR thus regulating EGFR degradation and downstream MAPK signaling. Involved in acrosome biogenesis through interaction with the spermatid ESCRT-0 complex and microtubules. Deubiquitinates BIRC6/bruce and KIF23/MKLP1.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4 PE=1 SV=3

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 11/137 (8%)

Query: 47  PPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKF 106
           PP P +       PG+ GL N GNTCF+N+ LQCLS+T  L EYF+ D+Y+ +++R N  
Sbjct: 292 PPSPHI------QPGLCGLGNLGNTCFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPL 345

Query: 107 NSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMW 166
                G KGE+ E  A L+K +WS          FK  + ++  Q+ G  Q D+QE L +
Sbjct: 346 -----GMKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAF 400

Query: 167 LLDKVHEDLNTATKKKY 183
           +LD +HEDLN   KK Y
Sbjct: 401 ILDGLHEDLNRVKKKPY 417

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2 SV=1

 Score =  111 bits (278), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 77/128 (60%), Gaps = 5/128 (3%)

Query: 60  PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTE 119
           PG+ GL N GNTCF+N+ LQCLS+T  L +YF+ D+Y+ +++R N       G KGE+ E
Sbjct: 299 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPL-----GMKGEIAE 353

Query: 120 QLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT 179
             A L+K +WS          FK  + ++  Q+ G  Q D+QE L +LLD +HEDLN   
Sbjct: 354 AYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVK 413

Query: 180 KKKYKTIK 187
           KK Y  +K
Sbjct: 414 KKPYLELK 421

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4 PE=2 SV=1

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 77/128 (60%), Gaps = 5/128 (3%)

Query: 60  PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTE 119
           PG+ GL N GNTCF+N+ LQCLS+T  L +YF+ D+Y+ +++R N       G KGE+ E
Sbjct: 299 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPL-----GMKGEIAE 353

Query: 120 QLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT 179
             A L+K +WS          FK  + ++  Q+ G  Q D+QE L +LLD +HEDLN   
Sbjct: 354 AYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVK 413

Query: 180 KKKYKTIK 187
           KK Y  +K
Sbjct: 414 KKPYLELK 421

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3

 Score =  111 bits (277), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 77/128 (60%), Gaps = 5/128 (3%)

Query: 60  PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTE 119
           PG+ GL N GNTCF+N+ LQCLS+T  L +YF+ D+Y+ +++R N       G KGE+ E
Sbjct: 299 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPL-----GMKGEIAE 353

Query: 120 QLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT 179
             A L+K +WS          FK  + ++  Q+ G  Q D+QE L +LLD +HEDLN   
Sbjct: 354 AYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVK 413

Query: 180 KKKYKTIK 187
           KK Y  +K
Sbjct: 414 KKPYLELK 421

Hydrolase that deubiquitinates target proteins such as the receptor ADORA2A and TRIM21. Deubiquitination of ADORA2A increases the amount of functional receptor at the cell surface. Plays a role in the regulation of quality control in the ER.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
328716317	827	PREDICTED: ubiquitin carboxyl-terminal h	0.901	0.209	0.706	1e-69
242015222	954	ubiquitin specific protease, putative [P	0.770	0.155	0.806	6e-66
322801921	357	hypothetical protein SINV_09091 [Solenop	0.791	0.425	0.764	2e-64
380027711	223	PREDICTED: ubiquitin carboxyl-terminal h	0.916	0.789	0.656	2e-64
340716424	928	PREDICTED: ubiquitin carboxyl-terminal h	0.890	0.184	0.673	2e-63
350424599	928	PREDICTED: ubiquitin carboxyl-terminal h	0.890	0.184	0.673	2e-63
328788793	935	PREDICTED: ubiquitin carboxyl-terminal h	0.890	0.182	0.657	3e-63
383866029	935	PREDICTED: ubiquitin carboxyl-terminal h	0.770	0.158	0.771	1e-62
307201063	202	Ubiquitin carboxyl-terminal hydrolase 31	0.729	0.693	0.773	1e-62
170028244	1083	ubiquitin carboxyl-terminal hydrolase 43	0.734	0.130	0.702	8e-58

>gi|328716317|ref|XP_001952124.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43-like [Acyrthosiphon pisum]

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 135/191 (70%), Positives = 155/191 (81%), Gaps = 18/191 (9%)

Query: 1   MVQKVSLLGLHNNKSNNMCSTYDHSMSCRRQAYGLVSLSSNDI----RVLPPKPLLFANG 56
           M+QK+S LGL  +KSN +CS YD        AY  VS SS DI        PK L   +G
Sbjct: 76  MLQKMSYLGLQQDKSN-LCSKYD--------AY--VSRSSTDIYNDNNYQTPKIL---SG 121

Query: 57  DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGE 116
           DKVPGV+GLRN GNTCFINA+LQCLSHTD+LA YFV+DQYK+D++RRNK NSKKYGT+GE
Sbjct: 122 DKVPGVVGLRNQGNTCFINAVLQCLSHTDVLARYFVMDQYKMDLTRRNKLNSKKYGTRGE 181

Query: 117 VTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176
           +TEQLA+LLKSIW C Y+PD+SNQFK I+DKYGTQYRGNNQHDAQEFL+WLLDKVHEDLN
Sbjct: 182 MTEQLALLLKSIWLCKYDPDMSNQFKTIVDKYGTQYRGNNQHDAQEFLLWLLDKVHEDLN 241

Query: 177 TATKKKYKTIK 187
            ATKKKYKTI+
Sbjct: 242 IATKKKYKTIR 252

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015222|ref|XP_002428271.1| ubiquitin specific protease, putative [Pediculus humanus corporis] gi|212512845|gb|EEB15533.1| ubiquitin specific protease, putative [Pediculus humanus corporis]

 Score =  255 bits (652), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 121/150 (80%), Positives = 132/150 (88%), Gaps = 2/150 (1%)

Query: 38  LSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYK 97
           +S ND+RV PP  L F   DKVPGVIGLRNHGNTCFINAILQCL+HTD LAEYFV++QYK
Sbjct: 150 ISDNDLRV-PPFKLTFP-ADKVPGVIGLRNHGNTCFINAILQCLTHTDCLAEYFVMNQYK 207

Query: 98  IDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQ 157
            D++RRNK  SKKYGTKGEVTEQLA+LLKS+W C YNPDISNQFKVI+DKYGTQY GNNQ
Sbjct: 208 ADLTRRNKLTSKKYGTKGEVTEQLALLLKSVWHCQYNPDISNQFKVIVDKYGTQYCGNNQ 267

Query: 158 HDAQEFLMWLLDKVHEDLNTATKKKYKTIK 187
           HDAQEFL+WLLDKVHEDLNTATKK YK  K
Sbjct: 268 HDAQEFLIWLLDKVHEDLNTATKKNYKANK 297

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801921|gb|EFZ22474.1| hypothetical protein SINV_09091 [Solenopsis invicta]

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/153 (76%), Positives = 135/153 (88%), Gaps = 1/153 (0%)

Query: 39  SSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKI 98
           S+ DIRV PP+       D+VPGVIGLRNHGNTCF+NA+LQCLSHTDILAEYFVLDQYK+
Sbjct: 186 SAGDIRVPPPR-PAHIPPDRVPGVIGLRNHGNTCFMNAVLQCLSHTDILAEYFVLDQYKV 244

Query: 99  DMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQH 158
           D+SRRNK NSKKYGTKGE+TEQLA+LLK+IWSC Y+P++S  FK ++DKYG+QYRGN QH
Sbjct: 245 DLSRRNKLNSKKYGTKGEITEQLALLLKAIWSCQYDPEMSTAFKSVVDKYGSQYRGNLQH 304

Query: 159 DAQEFLMWLLDKVHEDLNTATKKKYKTIKVKTP 191
           DAQEFL+WLLDKVHEDLN ATKKKYK IKV+ P
Sbjct: 305 DAQEFLLWLLDKVHEDLNQATKKKYKIIKVRIP 337

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027711|ref|XP_003697563.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like [Apis florea]

 Score =  250 bits (638), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 151/192 (78%), Gaps = 16/192 (8%)

Query: 1   MVQKVSLLGLHNNKSNNMCSTYDHSMSCRRQAYGLVSLSSNDIRVLPPKPLLFANGDKVP 60
           MVQ +S +G  N+K+++                  +S S+ DIRV PP+P      D+VP
Sbjct: 46  MVQHMSNVGTQNHKTSHRDD---------------LSSSAGDIRVPPPRPAHIPP-DRVP 89

Query: 61  GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQ 120
           GVIGLRNHGNTCF+NA+LQCLSHTDILAEYFVLDQYK+D+SRRNK NSKKYGTKGE+TEQ
Sbjct: 90  GVIGLRNHGNTCFMNAVLQCLSHTDILAEYFVLDQYKVDLSRRNKLNSKKYGTKGEITEQ 149

Query: 121 LAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATK 180
           LA+LLK+IWSC Y+P++S  FK ++DKYG+QYRGN QHDAQEFL+WLLDKVHEDLN ATK
Sbjct: 150 LALLLKAIWSCQYDPEMSTAFKSVVDKYGSQYRGNLQHDAQEFLLWLLDKVHEDLNQATK 209

Query: 181 KKYKTIKVKTPK 192
           KKYK IKV+  K
Sbjct: 210 KKYKIIKVRYHK 221

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716424|ref|XP_003396698.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like [Bombus terrestris]

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/187 (67%), Positives = 147/187 (78%), Gaps = 16/187 (8%)

Query: 1   MVQKVSLLGLHNNKSNNMCSTYDHSMSCRRQAYGLVSLSSNDIRVLPPKPLLFANGDKVP 60
           MVQ +S +G  N+K+++            R   G    S+ DIRV PP+       DKVP
Sbjct: 125 MVQHMSNVGTQNHKTSH------------RDDLGS---SAGDIRVPPPR-PAHIPPDKVP 168

Query: 61  GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQ 120
           GVIGLRNHGNTCF+NA+LQCLSHTDILAEYFVLDQYKID+SRRNK NSKKYGTKGE+TEQ
Sbjct: 169 GVIGLRNHGNTCFMNAVLQCLSHTDILAEYFVLDQYKIDLSRRNKLNSKKYGTKGEITEQ 228

Query: 121 LAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATK 180
           LA+LLK+IWSC Y+P++S  FK ++DKYG+QYRGN QHDAQEFL+WLLDKVHEDLN ATK
Sbjct: 229 LALLLKAIWSCQYDPEMSTAFKSVVDKYGSQYRGNLQHDAQEFLLWLLDKVHEDLNQATK 288

Query: 181 KKYKTIK 187
           KKYK IK
Sbjct: 289 KKYKIIK 295

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424599|ref|XP_003493849.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like [Bombus impatiens]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 126/187 (67%), Positives = 147/187 (78%), Gaps = 16/187 (8%)

Query: 1   MVQKVSLLGLHNNKSNNMCSTYDHSMSCRRQAYGLVSLSSNDIRVLPPKPLLFANGDKVP 60
           MVQ +S +G  N+K+++            R   G    S+ DIRV PP+       DKVP
Sbjct: 125 MVQHMSNVGTQNHKTSH------------RDDLGS---SAGDIRVPPPR-PAHIPPDKVP 168

Query: 61  GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQ 120
           GVIGLRNHGNTCF+NA+LQCLSHTDILAEYFVLDQYKID+SRRNK NSKKYGTKGE+TEQ
Sbjct: 169 GVIGLRNHGNTCFMNAVLQCLSHTDILAEYFVLDQYKIDLSRRNKLNSKKYGTKGEITEQ 228

Query: 121 LAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATK 180
           LA+LLK+IWSC Y+P++S  FK ++DKYG+QYRGN QHDAQEFL+WLLDKVHEDLN ATK
Sbjct: 229 LALLLKAIWSCQYDPEMSTAFKSVVDKYGSQYRGNLQHDAQEFLLWLLDKVHEDLNQATK 288

Query: 181 KKYKTIK 187
           KKYK IK
Sbjct: 289 KKYKIIK 295

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788793|ref|XP_396802.3| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like isoform 1 [Apis mellifera]

 Score =  246 bits (628), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 123/187 (65%), Positives = 147/187 (78%), Gaps = 16/187 (8%)

Query: 1   MVQKVSLLGLHNNKSNNMCSTYDHSMSCRRQAYGLVSLSSNDIRVLPPKPLLFANGDKVP 60
           MVQ +S +G  N+K+++                  +S S+ DIRV PP+       D+VP
Sbjct: 132 MVQHMSNVGTQNHKTSHRDD---------------LSSSAGDIRVPPPR-PAHIPPDRVP 175

Query: 61  GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQ 120
           GVIGLRNHGNTCF+NA+LQCLSHTDILAEYFVLDQYK+D+SRRNK NSKKYGTKGE+TEQ
Sbjct: 176 GVIGLRNHGNTCFMNAVLQCLSHTDILAEYFVLDQYKVDLSRRNKLNSKKYGTKGEITEQ 235

Query: 121 LAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATK 180
           LA+LLK+IWSC Y+P++S  FK ++DKYG+QYRGN QHDAQEFL+WLLDKVHEDLN ATK
Sbjct: 236 LALLLKAIWSCQYDPEMSTAFKSVVDKYGSQYRGNLQHDAQEFLLWLLDKVHEDLNQATK 295

Query: 181 KKYKTIK 187
           KKYK IK
Sbjct: 296 KKYKIIK 302

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866029|ref|XP_003708474.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like [Megachile rotundata]

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/149 (77%), Positives = 132/149 (88%), Gaps = 1/149 (0%)

Query: 39  SSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKI 98
           S+ DIRV PP+       D+VPGVIGLRNHGNTCF+NA+LQCLSHTDILAEYFVLDQYK+
Sbjct: 151 SAGDIRVPPPR-PAHIPPDRVPGVIGLRNHGNTCFMNAVLQCLSHTDILAEYFVLDQYKV 209

Query: 99  DMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQH 158
           D+SRRNK NSKKYGTKGE+TEQLA+LLK+IWSC Y+P++S  FK ++DKYG+QYRGN QH
Sbjct: 210 DLSRRNKLNSKKYGTKGEITEQLALLLKAIWSCQYDPEMSTAFKSVVDKYGSQYRGNLQH 269

Query: 159 DAQEFLMWLLDKVHEDLNTATKKKYKTIK 187
           DAQEFL+WLLDKVHEDLN ATKKKYK IK
Sbjct: 270 DAQEFLLWLLDKVHEDLNQATKKKYKIIK 298

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201063|gb|EFN80995.1| Ubiquitin carboxyl-terminal hydrolase 31 [Harpegnathos saltator]

 Score =  244 bits (623), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 109/141 (77%), Positives = 126/141 (89%), Gaps = 1/141 (0%)

Query: 39  SSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKI 98
           S+ DIRV PP+P      D+VPGVIGLRNHGNTCF+NA+LQCLSHTDILAEYFVLDQYK+
Sbjct: 27  SAGDIRVPPPRPAHIP-ADRVPGVIGLRNHGNTCFMNAVLQCLSHTDILAEYFVLDQYKV 85

Query: 99  DMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQH 158
           D+SRRNK NSKKYGTKGE+TEQLA+LLK+IWSC Y+P++S  FK ++DKYG+QYRGN QH
Sbjct: 86  DLSRRNKINSKKYGTKGEITEQLALLLKAIWSCQYDPEMSTAFKSVVDKYGSQYRGNLQH 145

Query: 159 DAQEFLMWLLDKVHEDLNTAT 179
           DAQEFL+WLLDKVHEDLN AT
Sbjct: 146 DAQEFLLWLLDKVHEDLNQAT 166

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028244|ref|XP_001842006.1| ubiquitin carboxyl-terminal hydrolase 43 [Culex quinquefasciatus] gi|167871831|gb|EDS35214.1| ubiquitin carboxyl-terminal hydrolase 43 [Culex quinquefasciatus]

 Score =  228 bits (581), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 99/141 (70%), Positives = 119/141 (84%)

Query: 47  PPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKF 106
           PP        D  PGVIGLRNHGNTCF+NA+LQCLSHTDILAEYFVLDQYK D+ RRNK 
Sbjct: 138 PPANGFVWPADTTPGVIGLRNHGNTCFMNAVLQCLSHTDILAEYFVLDQYKADLKRRNKI 197

Query: 107 NSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMW 166
           N+KK+GTKGE+TEQLA++LKS+W+C   P+ S+ FK ++D+YG+Q+R + QHDAQEFL W
Sbjct: 198 NAKKFGTKGELTEQLALVLKSLWTCKDAPEYSSSFKAVVDRYGSQFRSSTQHDAQEFLFW 257

Query: 167 LLDKVHEDLNTATKKKYKTIK 187
           LLDKVHEDLNTA+K+KYKTIK
Sbjct: 258 LLDKVHEDLNTASKRKYKTIK 278

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
FB|FBgn0050421	1272	CG30421 [Drosophila melanogast	0.625	0.094	0.708	9.8e-46
ZFIN|ZDB-GENE-100211-1	1154	usp43a "ubiquitin specific pep	0.651	0.108	0.531	1.2e-33
UNIPROTKB|Q70CQ4	1352	USP31 "Ubiquitin carboxyl-term	0.666	0.094	0.541	2.4e-32
UNIPROTKB|F1PGC7	1270	USP31 "Ubiquitin carboxyl-term	0.666	0.100	0.541	2.8e-32
UNIPROTKB|F1MF37	1269	USP31 "Ubiquitin carboxyl-term	0.666	0.100	0.541	3.6e-32
UNIPROTKB|F1NW53	1310	USP31 "Ubiquitin carboxyl-term	0.640	0.093	0.546	4.4e-31
UNIPROTKB|F1SS87	1123	USP43 "Ubiquitin carboxyl-term	0.609	0.104	0.5	5.1e-30
UNIPROTKB|E1BKF4	1121	USP43 "Ubiquitin carboxyl-term	0.598	0.102	0.515	1.7e-29
UNIPROTKB|B7ZVX5	1118	USP43 "Ubiquitin carboxyl-term	0.604	0.103	0.496	2.2e-29
UNIPROTKB|Q70EL4	1123	USP43 "Ubiquitin carboxyl-term	0.604	0.103	0.496	2.2e-29

FB|FBgn0050421 CG30421 [Drosophila melanogaster (taxid:7227)]

 Score = 492 (178.3 bits), Expect = 9.8e-46, P = 9.8e-46
 Identities = 85/120 (70%), Positives = 103/120 (85%)

Query:    57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGE 116
             D+ PGV+GL+NHGNTCF+NA+LQCLSHTDILAEYFVLDQYK D+ RRNK NS+K+GTK E
Sbjct:   259 DQTPGVMGLKNHGNTCFMNAVLQCLSHTDILAEYFVLDQYKADLKRRNKINSRKFGTKRE 318

Query:   117 VTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176
             +TEQLA +LK++W+C    D S  FK ++D+YGTQ+R + QHDAQEFL WLLDKVHEDLN
Sbjct:   319 LTEQLANVLKALWTCKNESDHSTSFKAVVDRYGTQFRSSTQHDAQEFLFWLLDKVHEDLN 378

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

ZFIN|ZDB-GENE-100211-1 usp43a "ubiquitin specific peptidase 43a" [Danio rerio (taxid:7955)]

 Score = 378 (138.1 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 68/128 (53%), Positives = 97/128 (75%)

Query:    51 LLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNS-- 108
             L +  G+K PGV GL+NHGNTCF+NA++QCLS+T++LAEY  L+QYK +++ R + N   
Sbjct:   102 LSWCYGEKTPGVQGLKNHGNTCFMNAVVQCLSNTELLAEYLGLEQYKYELNER-RINGMM 160

Query:   109 KKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLL 168
             K    +GEVT++LA L++++W+  Y P +S  FK ++ KYG+Q++GN QHDA EFL+WLL
Sbjct:   161 KSEEVRGEVTDKLASLVRALWTNDYTPQLSVDFKSVVAKYGSQFKGNAQHDALEFLLWLL 220

Query:   169 DKVHEDLN 176
             D VHED N
Sbjct:   221 DCVHEDAN 228

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|Q70CQ4 USP31 "Ubiquitin carboxyl-terminal hydrolase 31" [Homo sapiens (taxid:9606)]

 Score = 367 (134.2 bits), Expect = 2.4e-32, P = 2.4e-32
 Identities = 72/133 (54%), Positives = 90/133 (67%)

Query:    48 PKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFN 107
             P P   A  + VPGV GLRNHGNTCF+NA LQCLS+T++ AEY  L QY+      +   
Sbjct:   114 PAPPACA-AEPVPGVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSPDP 172

Query:   108 SKKYGT----KGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEF 163
              +  G     +GEVTEQLA L++++W+  Y P  S  FK I+ K   QYRGN+QHDAQEF
Sbjct:   173 EQPAGRGAQGQGEVTEQLAHLVRALWTLEYTPQHSRDFKTIVSKNALQYRGNSQHDAQEF 232

Query:   164 LMWLLDKVHEDLN 176
             L+WLLD+VHEDLN
Sbjct:   233 LLWLLDRVHEDLN 245

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F1PGC7 USP31 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)]

 Score = 366 (133.9 bits), Expect = 2.8e-32, P = 2.8e-32
 Identities = 72/133 (54%), Positives = 90/133 (67%)

Query:    48 PKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFN 107
             P P   A  + VPGV GLRNHGNTCF+NA LQCLS+T++ AEY  L QY+      +   
Sbjct:    31 PAPPASA-AEPVPGVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSPDP 89

Query:   108 SKKYGT----KGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEF 163
              +  G     +GEVTEQLA L++++W+  Y P  S  FK I+ K   QYRGN+QHDAQEF
Sbjct:    90 EQPVGRGTQGQGEVTEQLAHLVRALWTLEYTPQHSRDFKSIVSKNALQYRGNSQHDAQEF 149

Query:   164 LMWLLDKVHEDLN 176
             L+WLLD+VHEDLN
Sbjct:   150 LLWLLDRVHEDLN 162

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|F1MF37 USP31 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)]

 Score = 365 (133.5 bits), Expect = 3.6e-32, P = 3.6e-32
 Identities = 72/133 (54%), Positives = 90/133 (67%)

Query:    48 PKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFN 107
             P P   A  + VPGV GLRNHGNTCF+NA LQCLS+T++ AEY  L QY+      +   
Sbjct:    31 PAPPACA-AEPVPGVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSPDP 89

Query:   108 SKKYGT----KGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEF 163
              +  G     +GEVTEQLA L++++W+  Y P  S  FK I+ K   QYRGN+QHDAQEF
Sbjct:    90 EQPAGRGEQGQGEVTEQLAHLVRALWTLEYTPQHSRDFKSIVSKNALQYRGNSQHDAQEF 149

Query:   164 LMWLLDKVHEDLN 176
             L+WLLD+VHEDLN
Sbjct:   150 LLWLLDRVHEDLN 162

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|F1NW53 USP31 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)]

 Score = 355 (130.0 bits), Expect = 4.4e-31, P = 4.4e-31
 Identities = 71/130 (54%), Positives = 87/130 (66%)

Query:    47 PPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKF 106
             PP P      + VPGV GLRNHGNTCF+NAILQCLS+T++ AE+  L+Q+     R    
Sbjct:    89 PPPPE--RGSEAVPGVAGLRNHGNTCFMNAILQCLSNTELFAEFLALEQF-----RGPAE 141

Query:   107 NSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMW 166
                     GEVTEQLA L++++W+  Y P  S  FK I+ K   QYRGN QHDAQEFL+W
Sbjct:   142 PGPPPPAPGEVTEQLAQLVRALWTLEYTPQHSRDFKNIVSKNAMQYRGNAQHDAQEFLLW 201

Query:   167 LLDKVHEDLN 176
             LLD+VHEDLN
Sbjct:   202 LLDRVHEDLN 211

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F1SS87 USP43 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)]

 Score = 344 (126.2 bits), Expect = 5.1e-30, P = 5.1e-30
 Identities = 66/132 (50%), Positives = 92/132 (69%)

Query:    47 PPKP---LLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRR 103
             PP+P   L   +G + PG  GL+NHGNTCF+NA++QCLS+TD+LAE+  L +Y+    R 
Sbjct:    84 PPRPQPQLPAGDGARPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAVPGR- 142

Query:   104 NKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEF 163
                         EVTEQLA L++++W+  Y P +S +FK  + KYG+Q++GN+QHDA EF
Sbjct:   143 -----------AEVTEQLAALVRALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEF 191

Query:   164 LMWLLDKVHEDL 175
             L+WLLD+VHEDL
Sbjct:   192 LLWLLDRVHEDL 203

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|E1BKF4 USP43 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)]

 Score = 339 (124.4 bits), Expect = 1.7e-29, P = 1.7e-29
 Identities = 67/130 (51%), Positives = 91/130 (70%)

Query:    48 PKPLLFANGD--KVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNK 105
             P+P L A GD  + PG  GL+NHGNTCF+NA++QCLS+TD+LAE+  L +Y+ +  R   
Sbjct:    84 PQPQLPA-GDAARPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALRRYRAEPGR--- 139

Query:   106 FNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLM 165
                       EVTEQLA L++++W+  Y P +S +FK  + KYG Q++GN QHDA EFL+
Sbjct:   140 ---------AEVTEQLAALVRALWTREYTPQLSAEFKNAVSKYGAQFQGNAQHDALEFLL 190

Query:   166 WLLDKVHEDL 175
             WLLD+VHEDL
Sbjct:   191 WLLDRVHEDL 200

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|B7ZVX5 USP43 "Ubiquitin carboxyl-terminal hydrolase 43" [Homo sapiens (taxid:9606)]

 Score = 338 (124.0 bits), Expect = 2.2e-29, P = 2.2e-29
 Identities = 65/131 (49%), Positives = 91/131 (69%)

Query:    48 PKPLL---FANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRN 104
             P+P L     +G + PG  GL+NHGNTCF+NA++QCLS+TD+LAE+  L +Y+    R  
Sbjct:    83 PQPQLQLPAGDGARPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGR-- 140

Query:   105 KFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFL 164
                        EVTEQLA L++++W+  Y P +S +FK  + KYG+Q++GN+QHDA EFL
Sbjct:   141 ----------AEVTEQLAALVRALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEFL 190

Query:   165 MWLLDKVHEDL 175
             +WLLD+VHEDL
Sbjct:   191 LWLLDRVHEDL 201

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q70EL4 USP43 "Ubiquitin carboxyl-terminal hydrolase 43" [Homo sapiens (taxid:9606)]

 Score = 338 (124.0 bits), Expect = 2.2e-29, P = 2.2e-29
 Identities = 65/131 (49%), Positives = 91/131 (69%)

Query:    48 PKPLL---FANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRN 104
             P+P L     +G + PG  GL+NHGNTCF+NA++QCLS+TD+LAE+  L +Y+    R  
Sbjct:    83 PQPQLQLPAGDGARPPGAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPGR-- 140

Query:   105 KFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFL 164
                        EVTEQLA L++++W+  Y P +S +FK  + KYG+Q++GN+QHDA EFL
Sbjct:   141 ----------AEVTEQLAALVRALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEFL 190

Query:   165 MWLLDKVHEDL 175
             +WLLD+VHEDL
Sbjct:   191 LWLLDRVHEDL 201

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	0.691
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	192
COG5560	823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	4e-26
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	6e-24
COG5533	415	COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos	1e-14
cd02661	304	cd02661, Peptidase_C19E, A subfamily of Peptidase	3e-13
cd02669	440	cd02669, Peptidase_C19M, A subfamily of Peptidase	4e-13
cd02667	279	cd02667, Peptidase_C19K, A subfamily of Peptidase	6e-10
cd02660	328	cd02660, Peptidase_C19D, A subfamily of Peptidase	6e-09
cd02674	230	cd02674, Peptidase_C19R, A subfamily of peptidase	4e-08
cd02658	311	cd02658, Peptidase_C19B, A subfamily of Peptidase	3e-07
cd02663	300	cd02663, Peptidase_C19G, A subfamily of Peptidase	4e-07
COG5207	749	COG5207, UBP14, Isopeptidase T [Posttranslational	7e-06
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	7e-06
cd02671	332	cd02671, Peptidase_C19O, A subfamily of Peptidase	9e-06
cd02664	327	cd02664, Peptidase_C19H, A subfamily of Peptidase	1e-05
cd02659	334	cd02659, peptidase_C19C, A subfamily of Peptidase	6e-05
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	1e-04
cd02674	230	cd02674, Peptidase_C19R, A subfamily of peptidase	3e-04
cd02662	240	cd02662, Peptidase_C19F, A subfamily of Peptidase	0.001
cd02657	305	cd02657, Peptidase_C19A, A subfamily of Peptidase	0.002
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	0.003

>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score =  104 bits (260), Expect = 4e-26
 Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 5/126 (3%)

Query: 58  KVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEV 117
           K  G  GLRN GNTC++N+ LQCL HT  L +YF+ D+Y+  ++  N       G  G V
Sbjct: 261 KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPL-----GMHGSV 315

Query: 118 TEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177
               A L+K ++  + +    + FK  I  +  ++ G +Q D+QEF+ +LLD +HEDLN 
Sbjct: 316 ASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNR 375

Query: 178 ATKKKY 183
             KK Y
Sbjct: 376 IIKKPY 381

Length = 823

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score = 95.6 bits (238), Expect = 6e-24
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 11/134 (8%)

Query: 60  PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTE 119
            G  GL N GNTC++N++LQ L     L +Y + +  +              G+  ++  
Sbjct: 1   EGPTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSE---------LINPLGSLNQLPR 51

Query: 120 QLAVLLKSIWS-CSYNPDIS-NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177
            LA L  ++ S  S N  +S   F   + K   Q+ G  Q DA EFL++LLD++HEDLN+
Sbjct: 52  ALADLFHALQSPNSKNASVSPKNFLQALGKISPQFSGYMQQDAHEFLLFLLDQLHEDLNS 111

Query: 178 ATKKKYKTIKVKTP 191
             K+K    + ++ 
Sbjct: 112 LKKRKSHAAENESL 125

Length = 313

>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 70.8 bits (173), Expect = 1e-14
 Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 6/139 (4%)

Query: 45  VLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRN 104
           +  PK ++ +         GLRN GNTC++N  LQCL     L        Y  +++   
Sbjct: 54  LANPKKMVVSKRKDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDF 113

Query: 105 KFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISN-QFKVIIDKYGTQYRGNNQHDAQEF 163
                  G  G    +  + L     C     IS   F  I+      + G+ Q D+QEF
Sbjct: 114 PR-----GKPGSNAFKQFIALYETPGCHGPKSISPRNFIDILSGRNKLFSGDMQQDSQEF 168

Query: 164 LMWLLDKVHEDLNTATKKK 182
           L++ LD +HEDLN    + 
Sbjct: 169 LIFFLDLLHEDLNGNKSRS 187

Length = 415

>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 64  GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAV 123
           GL+N GNTCF+N++LQCL+HT  LA Y +  ++  D        ++ +     +   +  
Sbjct: 3   GLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDC------CNEGFCMMCALEAHVER 56

Query: 124 LLKSIWSCSYNP-DISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
            L S       P   S+  K I       +R   Q DA EFL +LLD + +
Sbjct: 57  ALASS-GPGSAPRIFSSNLKQI----SKHFRIGRQEDAHEFLRYLLDAMQK 102

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304

>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 30/161 (18%)

Query: 39  SSNDIRVLPPKPLLFA--NGDK-VPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQ 95
           +   I  L   P L    +G   +PG +GL N  N  + N I+Q LSH   +  +F+L  
Sbjct: 93  TKEQISDLDRDPKLSRDLDGKPYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLL-- 150

Query: 96  YKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKY------- 148
                    +        K E+ ++L+ L++ IW+          FK  +  +       
Sbjct: 151 --------YENYENIKDRKSELVKRLSELIRKIWNP-------RNFKGHVSPHELLQAVS 195

Query: 149 ---GTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKKYKTI 186
                ++    Q D  EFL WLL+ +H+DL  + K     I
Sbjct: 196 KVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSKKPNSSII 236

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 440

>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 29/106 (27%), Positives = 37/106 (34%), Gaps = 43/106 (40%)

Query: 64  GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAV 123
           GL N GNTCF NA++Q LS T  L E                            +E    
Sbjct: 1   GLSNLGNTCFFNAVMQNLSQTPALRELL--------------------------SETPKE 34

Query: 124 LLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLD 169
           L   +  C   P               Q++G  Q D+ E L +LLD
Sbjct: 35  LFSQV--CRKAP---------------QFKGYQQQDSHELLRYLLD 63

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 279

>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 27/121 (22%)

Query: 64  GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNS---------KKYGTK 114
           GL N G TCF+N ILQ L H  +L  YF+ D++       +  +          +++   
Sbjct: 2   GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYS 61

Query: 115 GEVTEQLAV-LLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
           G+ +    + LL   W                 K+     G +Q DA EF  +LLD++H 
Sbjct: 62  GDRSPYGPINLLYLSW-----------------KHSRNLAGYSQQDAHEFFQFLLDQLHT 104

Query: 174 D 174
            
Sbjct: 105 H 105

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328

>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 15/21 (71%), Positives = 18/21 (85%)

Query: 64 GLRNHGNTCFINAILQCLSHT 84
          GLRN GNTC++N+ILQCLS  
Sbjct: 1  GLRNLGNTCYMNSILQCLSAD 21

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230

>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 22/128 (17%)

Query: 64  GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAV 123
           GLRN GN+C++N++LQ L         +            NKF S       ++  QL  
Sbjct: 1   GLRNLGNSCYLNSVLQVLFSIPSFQWRYD--------DLENKFPSDVVDPANDLNCQLIK 52

Query: 124 LLKSIWSCSY----NPDISN----------QFKVIIDKYGTQYRGNNQHDAQEFLMWLLD 169
           L   + S  Y    +    N           FK +I K   ++    Q DA EFL+ L+D
Sbjct: 53  LADGLLSGRYSKPASLKSENDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLID 112

Query: 170 KVHEDLNT 177
           K+  +   
Sbjct: 113 KLDRESFK 120

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 311

>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 32/130 (24%), Positives = 45/130 (34%), Gaps = 51/130 (39%)

Query: 64  GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAV 123
           GL N GNTC+ N++LQ L        YF                           E L  
Sbjct: 1   GLENFGNTCYCNSVLQAL--------YF---------------------------ENLLT 25

Query: 124 LLKSIWSCSYNPDISNQF--------KVIIDKYGTQY---RGNNQHDAQEFLMWLLDKVH 172
            LK ++       IS Q         K  I +   +          DA EFL +LL+++ 
Sbjct: 26  CLKDLFES-----ISEQKKRTGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIA 80

Query: 173 EDLNTATKKK 182
           E L+   K +
Sbjct: 81  EILDAERKAE 90

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 300

>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

 Score = 45.4 bits (107), Expect = 7e-06
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 12/115 (10%)

Query: 63  IGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLA 122
           +GL N GN+C++++++Q L    +  E F L Q        +            +  QL 
Sbjct: 304 VGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQ--------HFEICYMKNPLECLFCQLM 355

Query: 123 VLLKSIWSCSYNPDISN----QFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
            LL  +     N  ++      FK++I +   ++    Q DA EFL++LL+K+ +
Sbjct: 356 KLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRK 410

Length = 749

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 64 GLRNHGNTCFINAILQCLSH 83
          GL N GNTC++N++LQ L  
Sbjct: 1  GLNNLGNTCYLNSVLQALFS 20

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 32/131 (24%), Positives = 46/131 (35%), Gaps = 22/131 (16%)

Query: 47  PPKPLLFANGDKVPGVIGLRNHGNTCFINAILQ----CLSHTDILAEYFVLDQYKIDMSR 102
           P         + +   +GL N GNTC++N++LQ    C      L     L      +  
Sbjct: 9   PSSATSCEKRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLISSVEQLQS 68

Query: 103 RNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQE 162
               N +KY       +    LL ++     NP                Y G  QHDAQE
Sbjct: 69  SFLLNPEKY-NDELANQAPRRLLNALREV--NP---------------MYEGYLQHDAQE 110

Query: 163 FLMWLLDKVHE 173
            L  +L  + E
Sbjct: 111 VLQCILGNIQE 121

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 332

>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 13/109 (11%)

Query: 64  GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAV 123
           GL N GNTC++N++LQ L     +A+ F      +++ R     S           +   
Sbjct: 1   GLINLGNTCYMNSVLQAL----FMAKDFRRQVLSLNLPRLGDSQS---------VMKKLQ 47

Query: 124 LLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVH 172
           LL++    +     +     +       +   +Q D  E+L +LLD++H
Sbjct: 48  LLQAHLMHTQRRAEAPPDYFLEASRPPWFTPGSQQDCSEYLRYLLDRLH 96

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 327

>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 32/117 (27%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 61  GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTE- 119
           G +GL+N G TC++N++LQ L  T      F    Y I               K      
Sbjct: 1   GYVGLKNQGATCYMNSLLQQLYMT----PEFRNAVYSI------PPTEDDDDNKSVPLAL 50

Query: 120 QLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQ-YRGNNQHDAQEFLMWLLDKVHEDL 175
           Q    L      S +P  + +       +G        QHD QEF   L DK+ E L
Sbjct: 51  Q---RLFLFLQLSESPVKTTELTDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKL 104

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 334

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 15/37 (40%), Positives = 26/37 (70%)

Query: 155 NNQHDAQEFLMWLLDKVHEDLNTATKKKYKTIKVKTP 191
           + Q DA EFL++LLDK+HE+L  ++K+   +  +K+ 
Sbjct: 20  SEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLKSL 56

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 11/18 (61%), Positives = 15/18 (83%)

Query: 155 NNQHDAQEFLMWLLDKVH 172
            +Q DAQEFL++LLD +H
Sbjct: 20  ADQQDAQEFLLFLLDGLH 37

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230

>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 15/27 (55%), Positives = 19/27 (70%)

Query: 64 GLRNHGNTCFINAILQCLSHTDILAEY 90
          GL N GNTCF+N++LQ L+    L EY
Sbjct: 1  GLVNLGNTCFMNSVLQALASLPSLIEY 27

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 240

>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 4/31 (12%)

Query: 64 GLRNHGNTCFINAILQCLSHT----DILAEY 90
          GL N GNTC++N+ LQCL       D L  Y
Sbjct: 1  GLTNLGNTCYLNSTLQCLRSVPELRDALKNY 31

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 305

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 55  NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKI 98
           N  K  G +GLRN G TC++N++LQ L         F  D Y I
Sbjct: 186 NSKKETGYVGLRNQGATCYMNSLLQSLFFI----AKFRKDVYGI 225

Length = 1089

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	99.98
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	99.96
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	99.92
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	99.91
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	99.91
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	99.9
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	99.9
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	99.9
cd02666	343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	99.89
KOG2026|consensus	442		99.89
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	99.89
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	99.88
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	99.88
KOG1865|consensus	545		99.87
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	99.87
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	99.86
KOG0944|consensus	763		99.86
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	99.84
KOG1873|consensus	877		99.8
KOG1868|consensus	653		99.78
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.73
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	99.7
KOG1870|consensus	842		99.69
KOG1863|consensus	1093		99.67
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.61
KOG1867|consensus	492		99.59
KOG1866|consensus	944		99.49
PF13423	295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	99.34
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	99.23
KOG1871|consensus	420		99.2
KOG1872|consensus	473		99.04
cd02672	268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	98.72
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	98.07
KOG1864|consensus	587		97.95
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	97.87
KOG4598|consensus	1203		97.86
KOG1864|consensus	587		97.79
cd02665	228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	96.86
KOG1275|consensus	1118		96.23
PF05408	193	Peptidase_C28: Foot-and-mouth virus L-proteinase;	94.25
PF08715	320	Viral_protease: Papain like viral protease; InterP	84.3

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=99.98  E-value=3.3e-32  Score=235.63  Aligned_cols=146  Identities=27%  Similarity=0.472  Sum_probs=119.5

Q ss_pred             cccceecCCCcccccCCCCCccc-CCCCccc--------------c-CCCCCCCCccccccCCchhhHHHHHHHHhCCHH
Q psy5641          23 DHSMSCRRQAYGLVSLSSNDIRV-LPPKPLL--------------F-ANGDKVPGVIGLRNHGNTCFINAILQCLSHTDI   86 (192)
Q Consensus        23 ~~~~~~lp~~~e~~~~~l~di~~-~~p~~~~--------------~-~~~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~   86 (192)
                      ...+||+|+|+++.|++|+||+. ..|+++.              . .+..+.+|++||.|+|||||||||||+|+|+|+
T Consensus        64 t~~~yc~~~~~~v~d~~l~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~  143 (440)
T cd02669          64 TLKFYCLPDNYEIIDSSLDDIKYVLNPTYTKEQISDLDRDPKLSRDLDGKPYLPGFVGLNNIKNNDYANVIIQALSHVKP  143 (440)
T ss_pred             CCCEEEeCCCCEEeCccHHHHHHHhcCCCCHHHHHHhhhccccccccCCCCccCCccCccCCCCchHHHHHHHHHHCCHH
Confidence            34479999999999999999994 4665441              1 123577899999999999999999999999999


Q ss_pred             HHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCC--CCCCChHHHHHHHHHh-cCCCCCCCCCCHHHH
Q psy5641          87 LAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCS--YNPDISNQFKVIIDKY-GTQYRGNNQHDAQEF  163 (192)
Q Consensus        87 fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--~~~~~p~~~~~~~~~~-~~~f~~~~QqDA~EF  163 (192)
                      ||++|+........          .....++..+|+.+++++|++.  ...++|.+|+.+++.. .+.|.+++|||||||
T Consensus       144 lr~~~l~~~~~~~~----------~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l~~~~~~~f~~~~QqDA~EF  213 (440)
T cd02669         144 IRNFFLLYENYENI----------KDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAVSKVSKKKFSITEQSDPVEF  213 (440)
T ss_pred             HHHHHhhccccccc----------cCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHHHhhcccccCCcccCCHHHH
Confidence            99999975432111          0134579999999999999875  3678899999999765 457999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy5641         164 LMWLLDKVHEDLNTA  178 (192)
Q Consensus       164 l~~LL~~L~~~l~~~  178 (192)
                      |.||||.||+++...
T Consensus       214 l~~LLd~L~~~l~~~  228 (440)
T cd02669         214 LSWLLNTLHKDLGGS  228 (440)
T ss_pred             HHHHHHHHHHHhccC
Confidence            999999999999854

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.8e-29  Score=216.62  Aligned_cols=122  Identities=39%  Similarity=0.713  Sum_probs=114.9

Q ss_pred             CCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChH
Q psy5641          60 PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISN  139 (192)
Q Consensus        60 ~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~  139 (192)
                      .|.+||+|+||||||||.||||.|++.+|+||++..|..++++.|+.     +..+.++.+++.|++.+..++..++.|.
T Consensus       263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Npl-----gmhg~vAsayadLik~ly~~~~haf~Ps  337 (823)
T COG5560         263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPL-----GMHGSVASAYADLIKQLYDGNLHAFTPS  337 (823)
T ss_pred             ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCcc-----chhhhHHHHHHHHHHHHhCccccccChH
Confidence            48899999999999999999999999999999999999999886654     7888999999999999999988999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCcccc
Q psy5641         140 QFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKKYKTI  186 (192)
Q Consensus       140 ~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k~~~~~  186 (192)
                      .|+..++.++..|.|+.|||.+||+.+|||.||++++++.+|+|.+-
T Consensus       338 ~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~Kpytsk  384 (823)
T COG5560         338 GFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSK  384 (823)
T ss_pred             HHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCC
Confidence            99999999999999999999999999999999999999999998653

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=99.92  E-value=2.2e-25  Score=184.86  Aligned_cols=105  Identities=29%  Similarity=0.386  Sum_probs=87.3

Q ss_pred             ccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC----------
Q psy5641          64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY----------  133 (192)
Q Consensus        64 GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~----------  133 (192)
                      ||.|+||||||||+||+|+++|+||++++........        .......++.++|++++..|++.+.          
T Consensus         1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~--------~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~   72 (311)
T cd02658           1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPS--------DVVDPANDLNCQLIKLADGLLSGRYSKPASLKSEN   72 (311)
T ss_pred             CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCC--------CcCCccccHHHHHHHHHHHhcCCCcCCCccccccc
Confidence            8999999999999999999999999999762211100        0112346799999999999988643          


Q ss_pred             ----CCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641         134 ----NPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN  176 (192)
Q Consensus       134 ----~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~  176 (192)
                          .++.|..|+.+++...+.|..++|||||||+.+||+.|++++.
T Consensus        73 ~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~  119 (311)
T cd02658          73 DPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESF  119 (311)
T ss_pred             cccccccCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhc
Confidence                2568999999999999999999999999999999999999985

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=99.91  E-value=1.5e-24  Score=180.83  Aligned_cols=109  Identities=27%  Similarity=0.428  Sum_probs=90.5

Q ss_pred             cccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcC-CCCCCChHHH
Q psy5641          63 IGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSC-SYNPDISNQF  141 (192)
Q Consensus        63 ~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~~~~~p~~~  141 (192)
                      +||.|+||||||||+||+|+|+|+||++++...+.....        ......++.++|++++..||.. ...++.|..|
T Consensus         1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~--------~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~   72 (328)
T cd02660           1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCL--------SCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINL   72 (328)
T ss_pred             CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccc--------cCCccccHHHHHHHHHHHHhcCCCCCCcCHHHH
Confidence            699999999999999999999999999998754322100        1123457999999999999544 4557789999


Q ss_pred             HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhc
Q psy5641         142 KVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT  179 (192)
Q Consensus       142 ~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~  179 (192)
                      +..++...+.|.+++|||||||+.+|||.||+++....
T Consensus        73 l~~~~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~  110 (328)
T cd02660          73 LYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDK  110 (328)
T ss_pred             HHHHHhhchhhcccccccHHHHHHHHHHHHHHHhhccc
Confidence            99998888899999999999999999999999987654

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=99.91  E-value=8.6e-24  Score=177.08  Aligned_cols=118  Identities=22%  Similarity=0.283  Sum_probs=87.4

Q ss_pred             CCCCccccCC---CCCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHH
Q psy5641          46 LPPKPLLFAN---GDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLA  122 (192)
Q Consensus        46 ~~p~~~~~~~---~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  122 (192)
                      +.|++.....   .+...|++||.|+||||||||+||+|+|+|+||++++.....              .....-...+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~--------------~~~~~~~q~~~   70 (332)
T cd02671           5 PAPQPSSATSCEKRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSL--------------ISSVEQLQSSF   70 (332)
T ss_pred             CCCCCcCCccccccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcc--------------cCcHHHHHHHH
Confidence            3455444433   356789999999999999999999999999999988633200              00011122233


Q ss_pred             HHHHHHHcCCCCCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641         123 VLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT  177 (192)
Q Consensus       123 ~l~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~  177 (192)
                      .++..++........|..|+.++++.++.|.+++||||||||.+|||.|++.+..
T Consensus        71 ~~l~~~~~~~~~~~~P~~~~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~~i~~  125 (332)
T cd02671          71 LLNPEKYNDELANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQELVEK  125 (332)
T ss_pred             HHHHHHHhhcccccCHHHHHHHHHHhccccCCccccCHHHHHHHHHHHHHHHHHh
Confidence            4455666654445569999999999999999999999999999999999976654

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=99.90  E-value=8.7e-24  Score=174.76  Aligned_cols=104  Identities=26%  Similarity=0.338  Sum_probs=87.1

Q ss_pred             ccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHHHHH
Q psy5641          64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKV  143 (192)
Q Consensus        64 GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~~~~  143 (192)
                      ||.|+||||||||+||+|+++|+||++++.......         .......++..+|++|+..|+.+. ..+.|..|+.
T Consensus         1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~---------~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~   70 (305)
T cd02657           1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARR---------GANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQ   70 (305)
T ss_pred             CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccc---------ccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHH
Confidence            899999999999999999999999999986543211         011234679999999999999864 3788999999


Q ss_pred             HHHHhcCCCC------CCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641         144 IIDKYGTQYR------GNNQHDAQEFLMWLLDKVHEDLNT  177 (192)
Q Consensus       144 ~~~~~~~~f~------~~~QqDA~EFl~~LL~~L~~~l~~  177 (192)
                      .+++..+.|.      +++||||+||+.+||+.|++++..
T Consensus        71 ~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~  110 (305)
T cd02657          71 LLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPG  110 (305)
T ss_pred             HHHHHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhcc
Confidence            9998888884      459999999999999999999864

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=99.90  E-value=1.3e-23  Score=172.96  Aligned_cols=107  Identities=30%  Similarity=0.440  Sum_probs=90.9

Q ss_pred             ccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHHH
Q psy5641          62 VIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQF  141 (192)
Q Consensus        62 ~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~~  141 (192)
                      ++||.|+||||||||+||+|+|+|+||++++...+.....          ....++.++|+.++..++..+.....|..|
T Consensus         1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~   70 (304)
T cd02661           1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC----------NEGFCMMCALEAHVERALASSGPGSAPRIF   70 (304)
T ss_pred             CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhcc----------CCcchHHHHHHHHHHHHHhCCCCccChHHH
Confidence            4899999999999999999999999999998654332111          133568899999999998877777889999


Q ss_pred             HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q psy5641         142 KVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTA  178 (192)
Q Consensus       142 ~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~  178 (192)
                      ..++....+.|..+.||||+||+.+|||.|++++...
T Consensus        71 ~~~l~~~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~  107 (304)
T cd02661          71 SSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDR  107 (304)
T ss_pred             HHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHhhh
Confidence            9999988899999999999999999999999886543

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=99.90  E-value=2e-23  Score=174.39  Aligned_cols=108  Identities=21%  Similarity=0.233  Sum_probs=85.3

Q ss_pred             ccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHHHHH
Q psy5641          64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKV  143 (192)
Q Consensus        64 GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~~~~  143 (192)
                      ||.|+||||||||+||+|+|+|+||++++...........+... .......++..+|+.|+..||.+....+.|..|..
T Consensus         1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~   79 (324)
T cd02668           1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPP-DKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVK   79 (324)
T ss_pred             CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccc-cCCcccchHHHHHHHHHHHHHhCCCceEChHHHHH
Confidence            89999999999999999999999999998654322111111000 00012357899999999999998888889999998


Q ss_pred             HHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641         144 IIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT  177 (192)
Q Consensus       144 ~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~  177 (192)
                      ++     .|..++||||+||+.+|||.||+++..
T Consensus        80 ~l-----~~~~~~QqDa~EFl~~lLd~L~~~l~~  108 (324)
T cd02668          80 AL-----GLDTGQQQDAQEFSKLFLSLLEAKLSK  108 (324)
T ss_pred             Hh-----CCCCccccCHHHHHHHHHHHHHHHHhh
Confidence            87     367889999999999999999999874

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02666 Peptidase_C19J A subfamily of Peptidase C19

Probab=99.89  E-value=3e-23  Score=174.18  Aligned_cols=110  Identities=16%  Similarity=0.233  Sum_probs=82.9

Q ss_pred             ccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhh-----hhcccccCCCC-----CCCcchHHHHHHHHHHHHHcC
Q psy5641          62 VIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKID-----MSRRNKFNSKK-----YGTKGEVTEQLAVLLKSIWSC  131 (192)
Q Consensus        62 ~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~-----~~~~~~~~~~~-----~~~~~~l~~~l~~l~~~l~~~  131 (192)
                      ++||.|+||||||||+||+|+++|+||++++.......     ...........     ......++.+|+.||..|+.+
T Consensus         1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s   80 (343)
T cd02666           1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS   80 (343)
T ss_pred             CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence            48999999999999999999999999999986431100     00000000000     001225889999999999998


Q ss_pred             CCCCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhc
Q psy5641         132 SYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT  179 (192)
Q Consensus       132 ~~~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~  179 (192)
                      ....+.|..++..+.        ..||||+||+..||+.||.+++...
T Consensus        81 ~~~~v~P~~~l~~l~--------~~QQDa~Ef~~~lld~Le~~lk~~~  120 (343)
T cd02666          81 NTRSVTPSKELAYLA--------LRQQDVTECIDNVLFQLEVALEPIS  120 (343)
T ss_pred             CCCccCcHHHHHhcc--------ccccchHHHHHHHHHHHHHHhcCcc
Confidence            888999999887653        2999999999999999999997544

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG2026|consensus

Probab=99.89  E-value=3.4e-23  Score=170.42  Aligned_cols=144  Identities=28%  Similarity=0.458  Sum_probs=120.9

Q ss_pred             cceecCCCcccccCCCCCccc-CCCCccc---------------c-CCCCCCCCccccccCCchhhHHHHHHHHhCCHHH
Q psy5641          25 SMSCRRQAYGLVSLSSNDIRV-LPPKPLL---------------F-ANGDKVPGVIGLRNHGNTCFINAILQCLSHTDIL   87 (192)
Q Consensus        25 ~~~~lp~~~e~~~~~l~di~~-~~p~~~~---------------~-~~~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~f   87 (192)
                      .|||+|++|++.|++++||++ +.|+.+.               . ....|.+|++||.|+.++.|.|+++|+|++.+++
T Consensus        80 kfyvlpe~~ei~d~s~~~ikhslkptftr~~cp~lD~~nr~~~raLd~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~Pl  159 (442)
T KOG2026|consen   80 KFYVLPENYEIDDPSLGDIKHSLKPTFTKTDCPNLDKVNRKLSRALDGSTYLPGFVGLNNIKANDYANAVLQALSHVVPL  159 (442)
T ss_pred             eEEecchhccccCchhhhhhccccceeehhhcccccccchhhhhhhcCCcceeeeeccchhhhHHHHHHHHHHHhccchh
Confidence            389999999999999999994 5776432               1 1246899999999999999999999999999999


Q ss_pred             HHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC--CCCChHHHHHHHH-HhcCCCCCCCCCCHHHHH
Q psy5641          88 AEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY--NPDISNQFKVIID-KYGTQYRGNNQHDAQEFL  164 (192)
Q Consensus        88 r~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~--~~~~p~~~~~~~~-~~~~~f~~~~QqDA~EFl  164 (192)
                      |+|++....             ..+....+...|+.+++++|+++.  ..++|.++.+++. .+.++|..++|.|+.|||
T Consensus       160 RnyFl~~~n-------------~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~~~s~k~f~i~~q~DpveFl  226 (442)
T KOG2026|consen  160 RNYFLLEEN-------------YFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVMKLSKKRFRIGQQSDPVEFL  226 (442)
T ss_pred             hhhhccccc-------------ccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHHHHhhhheecCCCCCHHHHH
Confidence            999986632             113456799999999999999873  4568999999885 455679999999999999


Q ss_pred             HHHHHHHHHHHhhhcCC
Q psy5641         165 MWLLDKVHEDLNTATKK  181 (192)
Q Consensus       165 ~~LL~~L~~~l~~~~~k  181 (192)
                      .||||.||.+++...+.
T Consensus       227 swllntlhs~l~~~k~~  243 (442)
T KOG2026|consen  227 SWLLNTLHSDLRGSKKA  243 (442)
T ss_pred             HHHHHHHHHHhCCCCCc
Confidence            99999999999976633

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=99.89  E-value=4.2e-23  Score=170.65  Aligned_cols=86  Identities=30%  Similarity=0.454  Sum_probs=76.8

Q ss_pred             ccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC--CCCChHHH
Q psy5641          64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY--NPDISNQF  141 (192)
Q Consensus        64 GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~--~~~~p~~~  141 (192)
                      ||.|+||||||||+||+|+|                               .++..+|+.+|+.||.+..  ..++|..|
T Consensus         1 Gl~NlGnTCY~NsvLQ~L~~-------------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f   49 (300)
T cd02663           1 GLENFGNTCYCNSVLQALYF-------------------------------ENLLTCLKDLFESISEQKKRTGVISPKKF   49 (300)
T ss_pred             CccCCCcceehhHHHHHhhh-------------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHH
Confidence            89999999999999999987                               1277889999999998743  45789999


Q ss_pred             HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcC
Q psy5641         142 KVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATK  180 (192)
Q Consensus       142 ~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~  180 (192)
                      +.+++...+.|.+++||||||||.+|||.||+++....+
T Consensus        50 ~~~l~~~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~   88 (300)
T cd02663          50 ITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAERK   88 (300)
T ss_pred             HHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999986543

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.88  E-value=1.5e-22  Score=162.11  Aligned_cols=113  Identities=31%  Similarity=0.541  Sum_probs=91.9

Q ss_pred             ccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcC--CCCCCChH
Q psy5641          62 VIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSC--SYNPDISN  139 (192)
Q Consensus        62 ~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~--~~~~~~p~  139 (192)
                      ++||.|.||||||||+||+|+++|+||++++............     .......+..+++.++..||..  ....+.|.
T Consensus         1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~   75 (269)
T PF00443_consen    1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESN-----PSKKIKEFLQQLQNLFRSLWSSNSSDSSISPS   75 (269)
T ss_dssp             --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSS-----TTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCH
T ss_pred             CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhcccc-----ccccccchhhhhhhhhhhhhhhcccccceeec
Confidence            4899999999999999999999999999998652222111111     1123456999999999999998  55677899


Q ss_pred             HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhc
Q psy5641         140 QFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT  179 (192)
Q Consensus       140 ~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~  179 (192)
                      .|..+++...+.|..++||||+||+..||+.|++++....
T Consensus        76 ~~~~~l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~  115 (269)
T PF00443_consen   76 DFINALSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSF  115 (269)
T ss_dssp             HHHHHHHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCS
T ss_pred             cccccccccccccccccccchhhhhcccccccchhhcccc
Confidence            9999999988889999999999999999999999987643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2.2e-22  Score=162.02  Aligned_cols=116  Identities=30%  Similarity=0.452  Sum_probs=93.4

Q ss_pred             CccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcc-hHHHHHHHHHHHHHcCCCCCCChH
Q psy5641          61 GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKG-EVTEQLAVLLKSIWSCSYNPDISN  139 (192)
Q Consensus        61 g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~l~~~l~~~~~~~~~p~  139 (192)
                      -++||+|+|||||||++||||+.+..+...|+...|...++.+++.     +..+ .....|..+...+-......+.|.
T Consensus        70 ~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~pr-----g~~g~~~~k~F~~l~~~~~~Hg~~sis~~  144 (415)
T COG5533          70 PPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPR-----GKPGSNAFKQFIALYETPGCHGPKSISPR  144 (415)
T ss_pred             CCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCC-----CCcchhHHHHHHHHHhccccCCCcccchH
Confidence            4699999999999999999999999999866655565555554432     3444 344556666666655556778999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCC
Q psy5641         140 QFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKK  181 (192)
Q Consensus       140 ~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k  181 (192)
                      .|+..++..++.|++..|||+|||+.++||.||++++....+
T Consensus       145 nF~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Sr  186 (415)
T COG5533         145 NFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSR  186 (415)
T ss_pred             HHHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCccc
Confidence            999999999999999999999999999999999999875544

>KOG1865|consensus

Probab=99.87  E-value=5.9e-22  Score=170.04  Aligned_cols=105  Identities=26%  Similarity=0.370  Sum_probs=94.8

Q ss_pred             ccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHHH
Q psy5641          62 VIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQF  141 (192)
Q Consensus        62 ~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~~  141 (192)
                      .+||.|+|||||+|||||||.++|||.+||+...+...+.+          ...++.++|+..+..-......++.|..|
T Consensus       108 ~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~----------~~~C~lc~~q~hi~~A~~~~g~pisP~~i  177 (545)
T KOG1865|consen  108 GAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHR----------AKFCMLCTFQAHITRALHNPGHPISPSQI  177 (545)
T ss_pred             CcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccc----------cCeeeehHHHHHHHHHhcCCCCccChHHH
Confidence            49999999999999999999999999999999888766543          34679999999888887777779999999


Q ss_pred             HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641         142 KVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN  176 (192)
Q Consensus       142 ~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~  176 (192)
                      +..+..+...|..+.|+||||||++++|.|+.-.-
T Consensus       178 ~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL  212 (545)
T KOG1865|consen  178 LSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL  212 (545)
T ss_pred             HHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999998764

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=99.87  E-value=3.8e-22  Score=166.85  Aligned_cols=106  Identities=25%  Similarity=0.247  Sum_probs=80.7

Q ss_pred             CccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHH
Q psy5641          61 GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQ  140 (192)
Q Consensus        61 g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~  140 (192)
                      |++||.|+||||||||+||+|+++|+||++++......           ......++..+|+.++..|+........|..
T Consensus         1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~-----------~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~   69 (334)
T cd02659           1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTE-----------DDDDNKSVPLALQRLFLFLQLSESPVKTTEL   69 (334)
T ss_pred             CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcc-----------cCcccccHHHHHHHHHHHHHhCCccccCcch
Confidence            79999999999999999999999999999998641000           0013456889999999999987654444444


Q ss_pred             HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641         141 FKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT  177 (192)
Q Consensus       141 ~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~  177 (192)
                      +..........|..++||||+||+.+||+.|++++..
T Consensus        70 ~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~  106 (334)
T cd02659          70 TDKTRSFGWDSLNTFEQHDVQEFFRVLFDKLEEKLKG  106 (334)
T ss_pred             hheeccCCCCCCCcccchhHHHHHHHHHHHHHHHhcc
Confidence            4311111234578899999999999999999988863

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=99.86  E-value=1.4e-21  Score=163.42  Aligned_cols=99  Identities=24%  Similarity=0.382  Sum_probs=77.8

Q ss_pred             ccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHH-HH
Q psy5641          64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQ-FK  142 (192)
Q Consensus        64 GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~-~~  142 (192)
                      ||.|+||||||||+||+|+++|+||++++.......            .....+..+|+.++..|......+..|.. |+
T Consensus         1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~------------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l   68 (327)
T cd02664           1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL------------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFL   68 (327)
T ss_pred             CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc------------CCcchHHHHHHHHHHHHhhcCCcccCCHHHHH
Confidence            899999999999999999999999999986543210            12345778899999888766556666665 66


Q ss_pred             HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641         143 VIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN  176 (192)
Q Consensus       143 ~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~  176 (192)
                      ...+  .+.|..++|||||||+.+||+.|+..+.
T Consensus        69 ~~~~--~~~f~~~~QqDa~EFl~~lLd~l~~~i~  100 (327)
T cd02664          69 EASR--PPWFTPGSQQDCSEYLRYLLDRLHTLIE  100 (327)
T ss_pred             HHhc--ccccCCCCcCCHHHHHHHHHHHHHHHHH
Confidence            5543  4679999999999999999999985443

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG0944|consensus

Probab=99.86  E-value=7e-22  Score=172.00  Aligned_cols=113  Identities=32%  Similarity=0.477  Sum_probs=94.2

Q ss_pred             CCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCC--
Q psy5641          57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYN--  134 (192)
Q Consensus        57 ~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~--  134 (192)
                      -..||++||+|+||+||||||+|+|+.+|.|...++.. ....       +.....+..+|.+++.+|...|.++++.  
T Consensus       302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~-~~~f-------~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p  373 (763)
T KOG0944|consen  302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQ-ERIF-------NCYPKDPTNDFNCQLAKLLHGMLSGKYSKP  373 (763)
T ss_pred             ccCCCccceeecCcchhHHHHHHHheecccHHHhhccc-ccee-------ecCCCCcchhHHHHHHHHHHHhhcCcccCc
Confidence            36789999999999999999999999999999888755 1111       1112235678999999999999998753  


Q ss_pred             --------CCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641         135 --------PDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT  177 (192)
Q Consensus       135 --------~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~  177 (192)
                              .+.|..|+..+++..+.|+..+||||+|||++||+.|.+....
T Consensus       374 ~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs  424 (763)
T KOG0944|consen  374 LMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRS  424 (763)
T ss_pred             cCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccc
Confidence                    3579999999999999999999999999999999999876543

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=99.84  E-value=3e-21  Score=158.11  Aligned_cols=70  Identities=36%  Similarity=0.592  Sum_probs=62.9

Q ss_pred             ccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHHHHH
Q psy5641          64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKV  143 (192)
Q Consensus        64 GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~~~~  143 (192)
                      ||.|+||||||||+||+|+|+|+||++++.                                           .|..|+.
T Consensus         1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------------~P~~~~~   37 (279)
T cd02667           1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------------TPKELFS   37 (279)
T ss_pred             CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------------------------------------------CHHHHHH
Confidence            899999999999999999999999999873                                           4677777


Q ss_pred             HHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641         144 IIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN  176 (192)
Q Consensus       144 ~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~  176 (192)
                      .++...+.|.+++||||+||+.+|||.|+..+.
T Consensus        38 ~l~~~~~~f~~~~QqDA~Efl~~lld~l~~~i~   70 (279)
T cd02667          38 QVCRKAPQFKGYQQQDSHELLRYLLDGLRTFID   70 (279)
T ss_pred             HHHHhhHhhcCCchhhHHHHHHHHHHHHHHhhh
Confidence            887778889999999999999999999985554

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1873|consensus

Probab=99.80  E-value=3.2e-19  Score=156.99  Aligned_cols=123  Identities=27%  Similarity=0.302  Sum_probs=93.7

Q ss_pred             CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhh---hcccccC----CCCCCCcchHHHHHHHHHHHHHc
Q psy5641          58 KVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDM---SRRNKFN----SKKYGTKGEVTEQLAVLLKSIWS  130 (192)
Q Consensus        58 ~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~---~~~~~~~----~~~~~~~~~l~~~l~~l~~~l~~  130 (192)
                      +...++||.|+|||||+|||+|.|+.+|.+|+.|....+....   .......    .......++++.+|+. +..|..
T Consensus       201 ~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~e  279 (877)
T KOG1873|consen  201 RGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMSE  279 (877)
T ss_pred             ccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhhh
Confidence            3445799999999999999999999999999999755543211   0000000    0112345678888888 666777


Q ss_pred             CCCCCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCC
Q psy5641         131 CSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKK  181 (192)
Q Consensus       131 ~~~~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k  181 (192)
                      +....+.|+.|...+....|+|.++.||||||+|++|||.|..|-.+..++
T Consensus       280 ~~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk  330 (877)
T KOG1873|consen  280 TTKSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKK  330 (877)
T ss_pred             ccCCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHH
Confidence            777888999999999999999999999999999999999998765544433

>KOG1868|consensus

Probab=99.78  E-value=6.1e-19  Score=156.82  Aligned_cols=118  Identities=36%  Similarity=0.611  Sum_probs=100.6

Q ss_pred             CCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcC-CCCC
Q psy5641          57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSC-SYNP  135 (192)
Q Consensus        57 ~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~~~  135 (192)
                      ....|.+||.|+|||||||++||||+.++.||+.++...+...+....      ......+..+...++.++|.. ....
T Consensus       296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~------~~~~~~l~~~~~~~l~~~~~~~~~~s  369 (653)
T KOG1868|consen  296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDL------FFGAEELESACAKLLQKLWHGHGQFS  369 (653)
T ss_pred             ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCC------cccchhHHHHHHHhhhhhccCCCcee
Confidence            455688999999999999999999999999999999888776665111      123456888888888888876 5667


Q ss_pred             CChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcC
Q psy5641         136 DISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATK  180 (192)
Q Consensus       136 ~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~  180 (192)
                      +.|..|+..+.+..+.|.++.||||+||+.++++.||++++....
T Consensus       370 ~~P~~f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~  414 (653)
T KOG1868|consen  370 VLPRRFIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTR  414 (653)
T ss_pred             cCcHHHHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCC
Confidence            889999999999999999999999999999999999999998654

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=4.8e-18  Score=144.62  Aligned_cols=112  Identities=28%  Similarity=0.353  Sum_probs=88.0

Q ss_pred             CCCC-ccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC---
Q psy5641          58 KVPG-VIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY---  133 (192)
Q Consensus        58 ~~~g-~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~---  133 (192)
                      ..+| .+||.|+||+||++||+|.|+....+...+..-.....+.-        ..+..++.+++.+|+.+|.....   
T Consensus       298 ~~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~--------~~P~~~l~CQl~kll~~mk~~p~~~y  369 (749)
T COG5207         298 SVPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYM--------KNPLECLFCQLMKLLSKMKETPDNEY  369 (749)
T ss_pred             cCCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeee--------cCCchhHHHHHHHHHhhccCCCCccc
Confidence            4556 89999999999999999999998877666543222111111        12456799999999999987652   


Q ss_pred             -CCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641         134 -NPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT  177 (192)
Q Consensus       134 -~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~  177 (192)
                       ..+.|..|+..++...+.|..++||||+|||.+||+.|.+....
T Consensus       370 ~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S  414 (749)
T COG5207         370 VNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERS  414 (749)
T ss_pred             cCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccch
Confidence             34679999999999999999999999999999999999875543

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=99.70  E-value=1.2e-17  Score=134.13  Aligned_cols=53  Identities=42%  Similarity=0.624  Sum_probs=47.6

Q ss_pred             ccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHHHHH
Q psy5641          64 GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKV  143 (192)
Q Consensus        64 GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~~~~  143 (192)
                      ||+|+||||||||+||+|+|+|+||++++...                                                
T Consensus         1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------   32 (240)
T cd02662           1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------   32 (240)
T ss_pred             CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence            89999999999999999999999999876210                                                


Q ss_pred             HHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641         144 IIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN  176 (192)
Q Consensus       144 ~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~  176 (192)
                                  +|||||||+.+||+.|+..+.
T Consensus        33 ------------~QqDa~EFl~~ll~~l~~~i~   53 (240)
T cd02662          33 ------------EQQDAHELFQVLLETLEQLLK   53 (240)
T ss_pred             ------------hhcCHHHHHHHHHHHHHHhcc
Confidence                        999999999999999996653

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1870|consensus

Probab=99.69  E-value=2.8e-17  Score=151.82  Aligned_cols=127  Identities=39%  Similarity=0.691  Sum_probs=112.7

Q ss_pred             CCCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q psy5641          56 GDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNP  135 (192)
Q Consensus        56 ~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~  135 (192)
                      ....+|.+||.|+|||||||+.+|+|.+.++++++++...+..+++..++     .+..+.+...+..++..+|.+....
T Consensus       240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~-----~~~~~~~~~~~~~l~~~~~s~~~~~  314 (842)
T KOG1870|consen  240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNP-----LGSAGEVASSFADLIKQLWSGNKSA  314 (842)
T ss_pred             CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCC-----CcccceechhhhhHHHHhccCCccc
Confidence            34567999999999999999999999999999999998877765655444     3567789999999999999998777


Q ss_pred             CChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCccccc
Q psy5641         136 DISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKKYKTIK  187 (192)
Q Consensus       136 ~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k~~~~~k  187 (192)
                      +.|..++..+....+.|.++.|||.+||+.+++|.+|++++...+++|.+.+
T Consensus       315 v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~  366 (842)
T KOG1870|consen  315 VAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGK  366 (842)
T ss_pred             cCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCccccc
Confidence            8899999999999999999999999999999999999999999999776654

>KOG1863|consensus

Probab=99.67  E-value=9.9e-17  Score=151.53  Aligned_cols=113  Identities=20%  Similarity=0.255  Sum_probs=93.7

Q ss_pred             CCCCCCCc-cccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC
Q psy5641          55 NGDKVPGV-IGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY  133 (192)
Q Consensus        55 ~~~~~~g~-~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~  133 (192)
                      +.+..+|+ +||.|+||||||||+||+|+.++.||+.+........          ..++...+..+|+.+|..|..++.
T Consensus       162 d~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~----------~~~~~~~v~~~lq~lF~~LQ~s~~  231 (1093)
T KOG1863|consen  162 DSKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTG----------HEDPRRSIPLALQRLFYELQMSKR  231 (1093)
T ss_pred             hhhhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCC----------cccccchHHHHHHHHHHHHhhcCC
Confidence            45677888 9999999999999999999999999999985542010          112344588999999999999999


Q ss_pred             CCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhc
Q psy5641         134 NPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT  179 (192)
Q Consensus       134 ~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~  179 (192)
                      +++.+.++...+++..  ...++|||++||++.|+|.|++.+....
T Consensus       232 k~Vdt~~~~~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~  275 (1093)
T KOG1863|consen  232 KYVDTSELTKSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAK  275 (1093)
T ss_pred             CCcCchhhhhhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchh
Confidence            9999999999887654  5568999999999999999998877544

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=7.9e-16  Score=136.12  Aligned_cols=107  Identities=24%  Similarity=0.289  Sum_probs=85.8

Q ss_pred             CCCCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCC
Q psy5641          55 NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYN  134 (192)
Q Consensus        55 ~~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~  134 (192)
                      +++...|++||+|.|+||||||.||+|+.+..||+.+......      +      ......++.+|+++|..|..+ ..
T Consensus       186 nSKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd------~------p~grdSValaLQr~Fynlq~~-~~  252 (1089)
T COG5077         186 NSKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTD------H------PRGRDSVALALQRLFYNLQTG-EE  252 (1089)
T ss_pred             ccccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCC------C------CCccchHHHHHHHHHHHHhcc-CC
Confidence            4677899999999999999999999999999999988643211      1      124456889999999999765 46


Q ss_pred             CCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641         135 PDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN  176 (192)
Q Consensus       135 ~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~  176 (192)
                      |++..+|....++.  .+....|||.|||-+.|.|.|++.++
T Consensus       253 PvdTteltrsfgWd--s~dsf~QHDiqEfnrVl~DnLEksmr  292 (1089)
T COG5077         253 PVDTTELTRSFGWD--SDDSFMQHDIQEFNRVLQDNLEKSMR  292 (1089)
T ss_pred             CcchHHhhhhcCcc--cchHHHHHhHHHHHHHHHHHHHHhhc
Confidence            77777887766432  46678999999999999999998654

>KOG1867|consensus

Probab=99.59  E-value=2e-15  Score=131.74  Aligned_cols=109  Identities=29%  Similarity=0.435  Sum_probs=95.6

Q ss_pred             CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCC-CCCC
Q psy5641          58 KVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCS-YNPD  136 (192)
Q Consensus        58 ~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-~~~~  136 (192)
                      ..-|+.||+|+|+||+||++||+|.+.+..+...+...+....         ......++.+++.+++..+|++. ..++
T Consensus       157 ~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~---------~~~~~~~l~~~~~~~~~~~~s~~~~~~~  227 (492)
T KOG1867|consen  157 TALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEP---------SSSGSSCLVCDLDRLFQALYSGHNRTPY  227 (492)
T ss_pred             eeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCC---------CCCCCcchhhhhhhhhhHhhcCCCCCCc
Confidence            4557899999999999999999999999999988876654111         11225689999999999999998 8899


Q ss_pred             ChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy5641         137 ISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDL  175 (192)
Q Consensus       137 ~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l  175 (192)
                      .|..+...+++..+++.+++|||||||+..+++.+|.+.
T Consensus       228 sp~~~l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~  266 (492)
T KOG1867|consen  228 SPFELLNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREK  266 (492)
T ss_pred             ChHHHHHHHHHhCcccccccccchHHHHHHhcccccccc
Confidence            999999999999999999999999999999999999888

>KOG1866|consensus

Probab=99.49  E-value=5.4e-14  Score=124.28  Aligned_cols=115  Identities=25%  Similarity=0.360  Sum_probs=94.4

Q ss_pred             CCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q psy5641          57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPD  136 (192)
Q Consensus        57 ~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~  136 (192)
                      ....|++||+|-|+|||||+++|.+.++|.+|.-++......+..        .......+.+.++.+|..+..++...+
T Consensus        90 Rpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~p--------d~s~~e~vl~~lQ~iF~hL~~s~lQyy  161 (944)
T KOG1866|consen   90 RPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLP--------DMSGDEKVLRHLQVIFGHLAASQLQYY  161 (944)
T ss_pred             CCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccch--------hhcchHHHHHHHHHHHHHHHHHhhhhh
Confidence            445689999999999999999999999999999876443221110        111223388999999999999999999


Q ss_pred             ChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhc
Q psy5641         137 ISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT  179 (192)
Q Consensus       137 ~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~  179 (192)
                      +|..|.+.++-........+||||-||+.-|||.+++.+++..
T Consensus       162 VPeg~Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg  204 (944)
T KOG1866|consen  162 VPEGFWKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLG  204 (944)
T ss_pred             cchhHHHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhC
Confidence            9999999998777778889999999999999999999987643

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase

Probab=99.34  E-value=4e-12  Score=104.99  Aligned_cols=104  Identities=18%  Similarity=0.154  Sum_probs=87.4

Q ss_pred             cccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHH-cCCCCCCChHHH
Q psy5641          63 IGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIW-SCSYNPDISNQF  141 (192)
Q Consensus        63 ~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-~~~~~~~~p~~~  141 (192)
                      .||.|.+++||+||+||+|+.+|++|+.++...   +.           ....++.+.|+-||+.|. .++.....+..|
T Consensus         1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~---~c-----------~~e~cL~cELgfLf~ml~~~~~g~~cq~sNf   66 (295)
T PF13423_consen    1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL---EC-----------PKEFCLLCELGFLFDMLDSKAKGINCQASNF   66 (295)
T ss_pred             CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc---CC-----------CccccHHHHHHHHHHHhhhhcCCCcChHHHH
Confidence            599999999999999999999999999988544   11           245689999999999998 666666778899


Q ss_pred             HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcC
Q psy5641         142 KVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATK  180 (192)
Q Consensus       142 ~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~  180 (192)
                      .++++.......-+.|+|.++|..||+++|+.++.....
T Consensus        67 lr~l~~~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~  105 (295)
T PF13423_consen   67 LRALSWIPEAAALGLQQDIQSLNRFLLEQLSMELLTFKP  105 (295)
T ss_pred             HHHHhcCHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCc
Confidence            998877654455677999999999999999999887665

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=99.23  E-value=9.1e-12  Score=100.38  Aligned_cols=30  Identities=30%  Similarity=0.625  Sum_probs=26.6

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q psy5641         149 GTQYRGNNQHDAQEFLMWLLDKVHEDLNTA  178 (192)
Q Consensus       149 ~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~  178 (192)
                      .+.|.+++||||||||++|||.||+++...
T Consensus        25 ~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~   54 (245)
T cd02673          25 NTEFDNDDQQDAHEFLLTLLEAIDDIMQVN   54 (245)
T ss_pred             hhhcCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence            567999999999999999999999987543

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1871|consensus

Probab=99.20  E-value=2.3e-11  Score=101.24  Aligned_cols=117  Identities=21%  Similarity=0.194  Sum_probs=71.4

Q ss_pred             CccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC-------
Q psy5641          61 GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY-------  133 (192)
Q Consensus        61 g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-------  133 (192)
                      -.+|+.|-||.|||||+||+|+.++||-+.+-... +.+...       . ....+++.++..+.....+-..       
T Consensus        27 ~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~-~~~~~~-------~-~~stp~lda~~~~~~df~n~~~~k~~r~N   97 (420)
T KOG1871|consen   27 DPRGSINKCNICFMNSILQALLYCSPFYNLLELIK-RADGTV-------K-EGSTPLLDASRPASSDFNNDSDAKLPRKN   97 (420)
T ss_pred             CCccccccceeEeeHHHHHHHHhCccHHHHHHhhh-hhcCce-------e-cccchhHHHHHHHHhhccccchhhhhhhc
Confidence            45999999999999999999999999998764333 111110       0 2234455555444443321110       


Q ss_pred             ---------------------CCCChHHHHHHHHHhcCCC---CCCCCCCHHHHHHHHHHHHHHHHhhhcCCCccccc
Q psy5641         134 ---------------------NPDISNQFKVIIDKYGTQY---RGNNQHDAQEFLMWLLDKVHEDLNTATKKKYKTIK  187 (192)
Q Consensus       134 ---------------------~~~~p~~~~~~~~~~~~~f---~~~~QqDA~EFl~~LL~~L~~~l~~~~~k~~~~~k  187 (192)
                                           .++-|..+...++. .++|   ..++|+||.|||.++||.||+|+..+.+......+
T Consensus        98 ~~~~~~~~~~~ses~~~d~~~dav~~d~~~~~l~t-~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~  174 (420)
T KOG1871|consen   98 SLRVPEHVVEKSESNKSDLQGDAVKPDPIYLDLLT-MSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPND  174 (420)
T ss_pred             cCCccccccchhhhhhhcccCccccCCchhhhccc-CCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcc
Confidence                                 01112222222211 1233   45899999999999999999999866555444333

>KOG1872|consensus

Probab=99.04  E-value=6.1e-11  Score=100.86  Aligned_cols=112  Identities=22%  Similarity=0.291  Sum_probs=85.3

Q ss_pred             CCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChH
Q psy5641          60 PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISN  139 (192)
Q Consensus        60 ~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~  139 (192)
                      +-.+|+.|+|||||||+.+|+|-.+|+++..+-...-..+...       .......+..+++.+|+.|.++  .++.|.
T Consensus       103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~-------t~~~a~~i~~~mR~~f~~~~~~--~~v~pi  173 (473)
T KOG1872|consen  103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGD-------TWERRRRISIETRTCFRPLCEK--GAVAPI  173 (473)
T ss_pred             cCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCc-------hhhhhhhHHHHHHHHHHhhhcc--CCcchH
Confidence            3457999999999999999999999999887753331111110       0012345778899999999886  788888


Q ss_pred             HHHHHHHHhcCCCCC------CCCCCHHHHHHHHHHHHHHHHhhhcC
Q psy5641         140 QFKVIIDKYGTQYRG------NNQHDAQEFLMWLLDKVHEDLNTATK  180 (192)
Q Consensus       140 ~~~~~~~~~~~~f~~------~~QqDA~EFl~~LL~~L~~~l~~~~~  180 (192)
                      .+.+.+.+..|.|.-      +.||||.|.+..++-.++..+.....
T Consensus       174 ~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~  220 (473)
T KOG1872|consen  174 NLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATE  220 (473)
T ss_pred             HHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccc
Confidence            999988887777754      88999999999999999877665443

>cd02672 Peptidase_C19P A subfamily of Peptidase C19

Probab=98.72  E-value=4.4e-08  Score=80.02  Aligned_cols=54  Identities=19%  Similarity=0.236  Sum_probs=42.5

Q ss_pred             CCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHH
Q psy5641          59 VPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLL  125 (192)
Q Consensus        59 ~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~  125 (192)
                      ..+++||.|.|.|||+||+||+|.++|+||+++...   ...          -....++.++++.||
T Consensus        12 ~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~---~~~----------~~~~~~l~~el~~lf   65 (268)
T cd02672          12 KTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAII---LVA----------CPKESCLLCELGYLF   65 (268)
T ss_pred             cccccccccCCccchHHHHHHHHHhcHHHHHHHHhh---ccc----------CCcCccHHHHHHHHH
Confidence            457999999999999999999999999999972111   010          124567999999999

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=98.07  E-value=1.4e-06  Score=68.85  Aligned_cols=20  Identities=75%  Similarity=1.360  Sum_probs=19.0

Q ss_pred             ccccCCchhhHHHHHHHHhC
Q psy5641          64 GLRNHGNTCFINAILQCLSH   83 (192)
Q Consensus        64 GL~NlGntCY~NsvLQ~L~~   83 (192)
                      ||.|.|||||+||+||+|.+
T Consensus         1 gl~n~~~~cy~n~~~Q~l~~   20 (230)
T cd02674           1 GLRNLGNTCYMNSILQCLSA   20 (230)
T ss_pred             CccccCcchhhhHHHHHHHH
Confidence            89999999999999999965

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1864|consensus

Probab=97.95  E-value=2.9e-05  Score=69.71  Aligned_cols=112  Identities=23%  Similarity=0.287  Sum_probs=58.0

Q ss_pred             cccCCchhhHHHHHHHHhCCHHHHHHHhhhc--chhhh-hcccccCCCCCCC-cchHHHHHHHHHHHHHcCCCCCCC--h
Q psy5641          65 LRNHGNTCFINAILQCLSHTDILAEYFVLDQ--YKIDM-SRRNKFNSKKYGT-KGEVTEQLAVLLKSIWSCSYNPDI--S  138 (192)
Q Consensus        65 L~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~--~~~~~-~~~~~~~~~~~~~-~~~l~~~l~~l~~~l~~~~~~~~~--p  138 (192)
                      |+|.||+||.|++||++..+|+|+.-+..-.  ..... ..+...+...... ......+....+... +.......  -
T Consensus        34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~  112 (587)
T KOG1864|consen   34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN-SSSNESFNLSV  112 (587)
T ss_pred             EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc-CCccccccchH
Confidence            9999999999999999999999998775221  00000 0000000000000 001111111111111 11111111  1


Q ss_pred             HHHHHHH---HHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641         139 NQFKVII---DKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT  177 (192)
Q Consensus       139 ~~~~~~~---~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~  177 (192)
                      ..+....   .+....|....|+||++|+.-++-.+.+.+..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~  154 (587)
T KOG1864|consen  113 TQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGV  154 (587)
T ss_pred             HHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhccc
Confidence            2222222   23344578899999999999988888766543

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=97.87  E-value=5.4e-06  Score=64.95  Aligned_cols=20  Identities=55%  Similarity=1.021  Sum_probs=19.6

Q ss_pred             ccccCCchhhHHHHHHHHhC
Q psy5641          64 GLRNHGNTCFINAILQCLSH   83 (192)
Q Consensus        64 GL~NlGntCY~NsvLQ~L~~   83 (192)
                      ||.|.|||||+||+||+|++
T Consensus         1 Gl~N~~n~Cy~ns~lq~l~~   20 (255)
T cd02257           1 GLNNLGNTCYLNSVLQALFS   20 (255)
T ss_pred             CccccCcchHHhHHHHHHHH
Confidence            89999999999999999998

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG4598|consensus

Probab=97.86  E-value=1.3e-05  Score=71.76  Aligned_cols=80  Identities=14%  Similarity=0.111  Sum_probs=55.3

Q ss_pred             CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCC
Q psy5641          58 KVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDI  137 (192)
Q Consensus        58 ~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~  137 (192)
                      ...|++||.|...|||+|+.+|+|+..|.+++.+.....                                     ..+.
T Consensus        83 ~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~~-------------------------------------~~~e  125 (1203)
T KOG4598|consen   83 NGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSEN-------------------------------------DSLE  125 (1203)
T ss_pred             CCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCCc-------------------------------------cccc
Confidence            456899999999999999999999999999998762110                                     0000


Q ss_pred             hHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641         138 SNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN  176 (192)
Q Consensus       138 p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~  176 (192)
                      ...+.+.+++..  -..++|||.+|+.+.++|.|+-.++
T Consensus       126 t~dlt~sfgw~s--~ea~~qhdiqelcr~mfdalehk~k  162 (1203)
T KOG4598|consen  126 TKDLTQSFGWTS--NEAYDQHDVQELCRLMFDALEHKWK  162 (1203)
T ss_pred             chhhHhhcCCCc--chhhhhhhHHHHHHHHHHHHHhhhc
Confidence            111222221111  1246899999999999999986654

>KOG1864|consensus

Probab=97.79  E-value=3.5e-05  Score=69.13  Aligned_cols=111  Identities=27%  Similarity=0.318  Sum_probs=77.4

Q ss_pred             CCccccccCCchhhHH--HHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCC--CCC
Q psy5641          60 PGVIGLRNHGNTCFIN--AILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCS--YNP  135 (192)
Q Consensus        60 ~g~~GL~NlGntCY~N--svLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~--~~~  135 (192)
                      -..-|..+.+++|+.|  ++.|.+....+++...+.....    ..     ..++....+...+..++...-...  ...
T Consensus       230 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  300 (587)
T KOG1864|consen  230 ERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTS----LK-----RSYIIKEELLTCLLDLFSSISSRKKLVGR  300 (587)
T ss_pred             ccccCccccCccccccchhhHHHHHhhhhhcccccchhhc----cc-----chhhhhHHHHHHhhhhccchhhhcccccc
Confidence            3568999999999999  9999999988888655422210    00     001122233334444444333322  234


Q ss_pred             CChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhc
Q psy5641         136 DISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT  179 (192)
Q Consensus       136 ~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~  179 (192)
                      +.|..|...+++....|..+.|||||||+.++++.+++-+....
T Consensus       301 i~p~~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~  344 (587)
T KOG1864|consen  301 ISPTRFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERES  344 (587)
T ss_pred             cCcchhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhc
Confidence            56889999999999999999999999999999999998776543

>cd02665 Peptidase_C19I A subfamily of Peptidase C19

Probab=96.86  E-value=0.00052  Score=54.82  Aligned_cols=22  Identities=45%  Similarity=0.878  Sum_probs=20.4

Q ss_pred             ccccCCchhhHHHHHHHHhCCH
Q psy5641          64 GLRNHGNTCFINAILQCLSHTD   85 (192)
Q Consensus        64 GL~NlGntCY~NsvLQ~L~~~~   85 (192)
                      ||.|.||||++|++.|+|+...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~Q   22 (228)
T cd02665           1 GLKNVGNTCWFSAVIQSLFSQQ   22 (228)
T ss_pred             CccccCcchhHHHHHHHHHHHH
Confidence            8999999999999999999854

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1275|consensus

Probab=96.23  E-value=0.012  Score=54.79  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=58.5

Q ss_pred             CCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChH
Q psy5641          60 PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISN  139 (192)
Q Consensus        60 ~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~  139 (192)
                      ..+.||.-.+-+-|.|++||.|+.+|++|..++....               ....|+++.|.=||..|..+..++....
T Consensus       497 T~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C---------------~~e~CL~CELGFLF~Ml~~S~G~~Cqa~  561 (1118)
T KOG1275|consen  497 TTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHIC---------------TKEFCLLCELGFLFTMLDSSTGDPCQAN  561 (1118)
T ss_pred             ceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCcc---------------chhHHHHHHHHHHHHHHhhhcCCccchh
Confidence            4579999999999999999999999999999985521               1356899999999999988766666666


Q ss_pred             HHHHHHH
Q psy5641         140 QFKVIID  146 (192)
Q Consensus       140 ~~~~~~~  146 (192)
                      .|..+++
T Consensus       562 NFlraf~  568 (1118)
T KOG1275|consen  562 NFLRAFR  568 (1118)
T ss_pred             HHHHHHh
Confidence            7777664

>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.25  E-value=0.029  Score=42.91  Aligned_cols=24  Identities=33%  Similarity=0.611  Sum_probs=16.4

Q ss_pred             CCccccccCCchhhHHHHHHHHhC
Q psy5641          60 PGVIGLRNHGNTCFINAILQCLSH   83 (192)
Q Consensus        60 ~g~~GL~NlGntCY~NsvLQ~L~~   83 (192)
                      .-+.|+.|.++||++||++|.+-.
T Consensus        31 ~eft~~PN~~dnCWlNaL~QL~~~   54 (193)
T PF05408_consen   31 MEFTGLPNNHDNCWLNALLQLFRY   54 (193)
T ss_dssp             -EEE----SSSTHHHHHHHHHHHH
T ss_pred             eEEecCCCCCCChHHHHHHHHHHH
Confidence            456799999999999999998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.

>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein

Probab=84.30  E-value=2.7  Score=35.32  Aligned_cols=80  Identities=21%  Similarity=0.197  Sum_probs=42.7

Q ss_pred             CCCccccccCCchhhHHHHHHHHhCCHH-HHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCC
Q psy5641          59 VPGVIGLRNHGNTCFINAILQCLSHTDI-LAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDI  137 (192)
Q Consensus        59 ~~g~~GL~NlGntCY~NsvLQ~L~~~~~-fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~  137 (192)
                      ..|++=|+=.-|+||+||++=+|=++.. |+.                             .++..+..+...+     .
T Consensus        99 ~~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~-----------------------------~~l~~aw~~f~~G-----~  144 (320)
T PF08715_consen   99 VNGFRVLKQSDNNCWVNAACLQLQALKIKFKS-----------------------------PGLDEAWNEFKAG-----D  144 (320)
T ss_dssp             ETTEEEE---TTTHHHHHHHHHHTTST--BSS-----------------------------HHHHHHHHHHHTT------
T ss_pred             ECCEEEEEecCCCcHHHHHHHHHHhcCCccCC-----------------------------HHHHHHHHHHhCC-----C
Confidence            3577777888899999999877644321 111                             1223333333333     3


Q ss_pred             hHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHH
Q psy5641         138 SNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE  173 (192)
Q Consensus       138 p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~  173 (192)
                      |..|...+-.. .....++-.||+++|..|++.++.
T Consensus       145 ~~~fVa~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~~  179 (320)
T PF08715_consen  145 PAPFVAWCYAS-TNAKKGDPGDAEYVLSKLLKDADL  179 (320)
T ss_dssp             -HHHHHHHHHH-TT--TTS---HHHHHHHHHTTB-T
T ss_pred             hHHHHHHHHHH-cCCCCCCCcCHHHHHHHHHHhccc
Confidence            66666655443 345678999999999999987654

The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	192
3n3k_A	396	The Catalytic Domain Of Usp8 In Complex With A Usp8		3e-24
2gfo_A	396	Structure Of The Catalytic Domain Of Human Ubiquiti		4e-23
2y6e_A	367	Ubiquitin Specific Protease 4 Is Inhibited By Its U		9e-22
2ibi_A	374	Covalent Ubiquitin-Usp2 Complex Length = 374		4e-19
2hd5_A	359	Usp2 In Complex With Ubiquitin Length = 359		5e-19
3v6c_A	367	Crystal Structure Of Usp2 In Complex With Mutated U		5e-19
3nhe_A	348	High Resolution Structure (1.26a) Of Usp2a In Compl		9e-18
3mtn_A	373	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		7e-16
3i3t_A	355	Crystal Structure Of Covalent Ubiquitin-usp21 Compl		8e-16
2y5b_A	370	Structure Of Usp21 In Complex With Linear Diubiquit		9e-16
3ihp_A	854	Covalent Ubiquitin-Usp5 Complex Length = 854		8e-06

>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396

Iteration: 1
 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 84/139 (60%), Gaps = 10/139 (7%)
Query: 38  LSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYK 97
           LS++ IR L P       G   P + GLRN GNTC++N+ILQCL +   LA+YF  + Y+
Sbjct: 43  LSASQIRNLNP-----VFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQ 97
Query: 98  IDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQ 157
            D++R N       G KGEV E+  +++K++W+  Y       FK+ I K   Q+ G +Q
Sbjct: 98  DDINRSNLL-----GHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ 152
Query: 158 HDAQEFLMWLLDKVHEDLN 176
            D+QE L++L+D +HEDLN
Sbjct: 153 QDSQELLLFLMDGLHEDLN 171

>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396

Iteration: 1
 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 81/139 (58%), Gaps = 10/139 (7%)
Query: 38  LSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYK 97
           LS++ IR L P       G   P + GLRN GNTC+ N+ILQCL +   LA+YF  + Y+
Sbjct: 43  LSASQIRNLNP-----VFGGSGPALTGLRNLGNTCYXNSILQCLCNAPHLADYFNRNCYQ 97
Query: 98  IDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQ 157
            D++R N       G KGEV E+  ++ K++W+  Y       FK+ I K   Q+ G +Q
Sbjct: 98  DDINRSNLL-----GHKGEVAEEFGIIXKALWTGQYRYISPKDFKITIGKINDQFAGYSQ 152
Query: 158 HDAQEFLMWLLDKVHEDLN 176
            D+QE L++L D +HEDLN
Sbjct: 153 QDSQELLLFLXDGLHEDLN 171

>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367

Iteration: 1
 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Query: 60  PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTE 119
           PG+ GL N GNT F+N+ LQCLS+T  L +YF+ D+Y+ +++R N       G KGE+ E
Sbjct: 6   PGLCGLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPL-----GMKGEIAE 60
Query: 120 QLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176
             A L+K +WS          FK  + ++  Q+ G  Q D+QE L +LLD +HEDLN
Sbjct: 61  AYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLN 117

>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 8/123 (6%)
Query: 55  NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTK 114
           N     G+ GLRN GNTCF+N+ILQCLS+T  L +Y +   Y  D+   +  ++      
Sbjct: 28  NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTA----- 82
Query: 115 GEVTEQLAVLLKSIWSCSYNPDIS-NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
             + E+ A L+++IW+ S N  +S ++FK  I +Y  ++ G NQ DAQEFL +LLD +H 
Sbjct: 83  --LVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHN 140
Query: 174 DLN 176
           ++N
Sbjct: 141 EVN 143

>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 8/123 (6%)
Query: 55  NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTK 114
           N     G+ GLRN GNTCF+N+ILQCLS+T  L +Y +   Y  D+   +  ++      
Sbjct: 2   NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTA----- 56
Query: 115 GEVTEQLAVLLKSIWSCSYNPDIS-NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
             + E+ A L+++IW+ S N  +S ++FK  I +Y  ++ G NQ DAQEFL +LLD +H 
Sbjct: 57  --LVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHN 114
Query: 174 DLN 176
           ++N
Sbjct: 115 EVN 117

>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 8/123 (6%)
Query: 55  NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTK 114
           N     G+ GLRN GNTCF+N+ILQCLS+T  L +Y +   Y  D+   +  ++      
Sbjct: 21  NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTA----- 75
Query: 115 GEVTEQLAVLLKSIWSCSYNPDIS-NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
             + E+ A L+++IW+ S N  +S ++FK  I +Y  ++ G NQ DAQEFL +LLD +H 
Sbjct: 76  --LVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHN 133
Query: 174 DLN 176
           ++N
Sbjct: 134 EVN 136

>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348

Iteration: 1
 Score = 86.3 bits (212), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 55  NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTK 114
           N     G+ GLRN GNT F+N+ILQCLS+T  L +Y +   Y  D+   +  ++      
Sbjct: 2   NSKSAQGLAGLRNLGNTXFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTA----- 56
Query: 115 GEVTEQLAVLLKSIWSCSYNPDIS-NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
             + E+ A L+++IW+ S N  +S ++FK  I +Y  ++ G NQ DAQEFL +LLD +H 
Sbjct: 57  --LVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHN 114
Query: 174 DLN 176
           ++N
Sbjct: 115 EVN 117

>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 15/120 (12%)
Query: 61  GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQ 120
           G +GLRN GNTCF+NA+LQCLS T  L ++ +   ++ ++           G   E+TE 
Sbjct: 21  GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVP--------GGGRAQELTEA 72
Query: 121 LAVLLKSIW---SC-SYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176
            A ++ ++W   SC + NP    +F+ +  KY   + G +Q DAQEFL  L++++H ++N
Sbjct: 73  FADVIGALWHPDSCEAVNP---TRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEIN 129

>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 15/120 (12%)
Query: 61  GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQ 120
           G +GLRN GNTCF+NA+LQCLS T  L ++ +   ++ ++           G   E+TE 
Sbjct: 2   GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVP--------GGGRAQELTEA 53
Query: 121 LAVLLKSIW---SC-SYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176
            A ++ ++W   SC + NP    +F+ +  KY   + G +Q DAQEFL  L++++H ++N
Sbjct: 54  FADVIGALWHPDSCEAVNP---TRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEIN 110

>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 15/120 (12%)
Query: 61  GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQ 120
           G +GLRN GNTCF+NA+LQCLS T  L ++ +   ++ ++           G   E+TE 
Sbjct: 15  GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVP--------GGGRAQELTEA 66
Query: 121 LAVLLKSIW---SC-SYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176
            A ++ ++W   SC + NP    +F+ +  KY   + G +Q DAQEFL  L++++H ++N
Sbjct: 67  FADVIGALWHPDSCEAVNP---TRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEIN 123

>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 33/149 (22%)
Query: 46  LPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNK 105
           +P KPL        PG  G+RN GN+C++N+++Q L         +V    KI       
Sbjct: 334 VPLKPLFG------PGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKI------- 380
Query: 106 FNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQ--------------------FKVII 145
           F +       + + Q+A L   + S  Y+  +                       FK +I
Sbjct: 381 FQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALI 440
Query: 146 DKYGTQYRGNNQHDAQEFLMWLLDKVHED 174
            K   ++  N Q DAQEF + L++ V  +
Sbjct: 441 GKGHPEFSTNRQQDAQEFFLHLINMVERN 469

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	5e-42
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	3e-38
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	7e-38
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	2e-31
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	2e-30
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	3e-27
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	8e-26
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	5e-15
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	2e-14
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	8e-14

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396

 Score =  144 bits (365), Expect = 5e-42
 Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 10/152 (6%)

Query: 36  VSLSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQ 95
             LS++ IR L P       G   P + GLRN GNTC++N+ILQCL +   LA+YF  + 
Sbjct: 41  SRLSASQIRNLNPV-----FGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNC 95

Query: 96  YKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGN 155
           Y+ D++R N       G KGEV E+  +++K++W+  Y       FK+ I K   Q+ G 
Sbjct: 96  YQDDINRSNLL-----GHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGY 150

Query: 156 NQHDAQEFLMWLLDKVHEDLNTATKKKYKTIK 187
           +Q D+QE L++L+D +HEDLN A  +K    +
Sbjct: 151 SQQDSQELLLFLMDGLHEDLNKADNRKRYKEE 182

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348

 Score =  133 bits (336), Expect = 3e-38
 Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 8/134 (5%)

Query: 55  NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTK 114
           N     G+ GLRN GNTCF+N+ILQCLS+T  L +Y +   Y  D+   +          
Sbjct: 2   NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGS-------NAH 54

Query: 115 GEVTEQLAVLLKSIWSCSYNPDIS-NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHE 173
             + E+ A L+++IW+ S N  +S ++FK  I +Y  ++ G NQ DAQEFL +LLD +H 
Sbjct: 55  TALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHN 114

Query: 174 DLNTATKKKYKTIK 187
           ++N  T +     +
Sbjct: 115 EVNRVTLRPKSNPE 128

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367

 Score =  133 bits (335), Expect = 7e-38
 Identities = 55/128 (42%), Positives = 77/128 (60%), Gaps = 5/128 (3%)

Query: 60  PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTE 119
           PG+ GL N GNTCF+N+ LQCLS+T  L +YF+ D+Y+ +++R N       G KGE+ E
Sbjct: 6   PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPL-----GMKGEIAE 60

Query: 120 QLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT 179
             A L+K +WS          FK  + ++  Q+ G  Q D+QE L +LLD +HEDLN   
Sbjct: 61  AYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVK 120

Query: 180 KKKYKTIK 187
           KK Y  +K
Sbjct: 121 KKPYLELK 128

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355

 Score =  115 bits (290), Expect = 2e-31
 Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 9/133 (6%)

Query: 61  GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQ 120
           G +GLRN GNTCF+NA+LQCLS T  L ++ +   ++ ++           G   E+TE 
Sbjct: 2   GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEV--------PGGGRAQELTEA 53

Query: 121 LAVLLKSIWSCSYNPDIS-NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT 179
            A ++ ++W       ++  +F+ +  KY   + G +Q DAQEFL  L++++H ++N   
Sbjct: 54  FADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRG 113

Query: 180 KKKYKTIKVKTPK 192
           ++    +      
Sbjct: 114 RRAPPILANGPVP 126

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score =  115 bits (289), Expect = 2e-30
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 27/143 (18%)

Query: 60  PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTE 119
           PG  G+RN GN+C++N+++Q L         +V    KI       F +       + + 
Sbjct: 342 PGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKI-------FQNAPTDPTQDFST 394

Query: 120 QLAVLLKSIWSCSYNPDISN--------------------QFKVIIDKYGTQYRGNNQHD 159
           Q+A L   + S  Y+  +                       FK +I K   ++  N Q D
Sbjct: 395 QVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQD 454

Query: 160 AQEFLMWLLDKVHEDLNTATKKK 182
           AQEF + L++ V  +  ++    
Sbjct: 455 AQEFFLHLINMVERNCRSSENPN 477

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score =  105 bits (262), Expect = 3e-27
 Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 18/129 (13%)

Query: 64  GLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAV 123
           GL N GNTC++NA +QC+     L +     +Y   +    +       +   +T  L  
Sbjct: 16  GLTNLGNTCYMNATVQCIRSVPELKDAL--KRYAGALRASGEM-----ASAQYITAALRD 68

Query: 124 LLKSIWSC--SYNPDISNQFKVIIDKYGTQYRGNN------QHDAQEFLMWLLDKVHEDL 175
           L  S+     S  P         +     Q+          Q DA E  + ++  + + L
Sbjct: 69  LFDSMDKTSSSIPP---IILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKL 125

Query: 176 NTATKKKYK 184
                   K
Sbjct: 126 EAIEDDSVK 134

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score =  101 bits (254), Expect = 8e-26
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 10/182 (5%)

Query: 15  SNNMCSTYDHSMSCRRQAYGLVSLSSNDIRVLPPKPLLFANGDKVPGVIGLRNHGNTCFI 74
               C  Y  ++     A           + + P      + ++  G+ GL N G+TCF+
Sbjct: 100 FCFKCEDYIGNIDLINDAILAKYWDDVCTKTMVP------SMERRDGLSGLINMGSTCFM 153

Query: 75  NAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYN 134
           ++ILQCL H      + +   +  +   R+            V E    L     S S  
Sbjct: 154 SSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSST 213

Query: 135 ----PDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKKYKTIKVKT 190
                           K      G +Q DA EF  ++++++H+          +  +   
Sbjct: 214 STNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANN 273

Query: 191 PK 192
            +
Sbjct: 274 KQ 275

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 71.5 bits (175), Expect = 5e-15
 Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 15/126 (11%)

Query: 58  KVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEV 117
           K  G +GL+N G TC++N++LQ L  T+ L +   +   + D S ++            V
Sbjct: 171 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKS------------V 218

Query: 118 TEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177
              L  +   +             K              QHD QE    LLD V   +  
Sbjct: 219 PLALQRVFYELQHSDKPVGTKKLTKSFG---WETLDSFMQHDVQELCRVLLDNVENKMKG 275

Query: 178 ATKKKY 183
              +  
Sbjct: 276 TCVEGT 281

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 15/126 (11%)

Query: 58  KVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEV 117
           K  G +GL+N G TC++N++LQ L  T+ L +   +   + D S ++            V
Sbjct: 2   KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKS------------V 49

Query: 118 TEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177
              L  +   +             K    +         QHD QE    LLD V   +  
Sbjct: 50  PLALQRVFYELQHSDKPVGTKKLTKSFGWE---TLDSFMQHDVQELCRVLLDNVENKMKG 106

Query: 178 ATKKKY 183
              +  
Sbjct: 107 TCVEGT 112

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415

 Score = 67.6 bits (164), Expect = 8e-14
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 10/129 (7%)

Query: 63  IGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLA 122
           +G +N GNTC++NA LQ L   + L +  +       +S     + + +     +  ++ 
Sbjct: 25  VGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQ---IVIEMK 81

Query: 123 VLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNN-------QHDAQEFLMWLLDKVHEDL 175
              +++ + S+   +       + K   Q+   +       Q DA+E    L   +    
Sbjct: 82  RCFENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVF 141

Query: 176 NTATKKKYK 184
                + ++
Sbjct: 142 GDKFSEDFR 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	99.97
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	99.96
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	99.96
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	99.95
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.94
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.94
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	99.93
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	99.93
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	99.92
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.9
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	99.69
1qmy_A	167	Protease, leader protease; hydrolase, sulfhydryl p	89.29
2fe8_A	315	PP1AB, ORF1AB, replicase polyprotein 1AB; protease	83.12
3mp2_A	211	Non-structural protein 3; papain-like protease, TG	82.83

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=99.97  E-value=1.9e-30  Score=218.22  Aligned_cols=123  Identities=44%  Similarity=0.779  Sum_probs=105.7

Q ss_pred             CCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q psy5641          57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPD  136 (192)
Q Consensus        57 ~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~  136 (192)
                      .+.+|++||.|+||||||||+||+|+|+|+||++|+...+...+...++     .+..+.+..+|+.|++.||.+....+
T Consensus         3 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~l~~L~~~l~~~~~~~i   77 (367)
T 2y6e_A            3 HIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNP-----LGMKGEIAEAYAELIKQMWSGRDAHV   77 (367)
T ss_dssp             -CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCT-----TSCTTHHHHHHHHHHHHHTSSSCSEE
T ss_pred             CCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCC-----CCcchHHHHHHHHHHHHHHcCCCCCc
Confidence            4678999999999999999999999999999999997766544332221     23456799999999999999888889


Q ss_pred             ChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCcc
Q psy5641         137 ISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKKYK  184 (192)
Q Consensus       137 ~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k~~~  184 (192)
                      .|..|+.++++..+.|.+++||||||||.+|||.||+++++..++++.
T Consensus        78 ~P~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~  125 (367)
T 2y6e_A           78 APRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYL  125 (367)
T ss_dssp             CCHHHHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCC
T ss_pred             CHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCcc
Confidence            999999999999999999999999999999999999999887766543

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=99.96  E-value=1.6e-29  Score=214.95  Aligned_cols=120  Identities=43%  Similarity=0.803  Sum_probs=103.0

Q ss_pred             CCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q psy5641          57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPD  136 (192)
Q Consensus        57 ~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~  136 (192)
                      .+.+|++||.|+||||||||+||||+|+|+||++|+...+..++...+.     .+..+.+..+++.+++.||.+....+
T Consensus        57 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~-----~~~~~~l~~~~~~l~~~l~~~~~~~i  131 (396)
T 2gfo_A           57 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNL-----LGHKGEVAEEFGIIMKALWTGQYRYI  131 (396)
T ss_dssp             CSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCT-----TSCTTHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCC-----CCcccHHHHHHHHHHHHHHcCCCceE
Confidence            4578999999999999999999999999999999997766544433221     23456789999999999999888888


Q ss_pred             ChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCC
Q psy5641         137 ISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKK  181 (192)
Q Consensus       137 ~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k  181 (192)
                      .|..|+.+++...+.|.+++||||||||.+|||.||+++.+...+
T Consensus       132 ~P~~f~~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~  176 (396)
T 2gfo_A          132 SPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR  176 (396)
T ss_dssp             CCHHHHHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC-
T ss_pred             CHHHHHHHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccc
Confidence            999999999999999999999999999999999999999865443

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=99.96  E-value=8.5e-29  Score=205.63  Aligned_cols=121  Identities=39%  Similarity=0.701  Sum_probs=100.0

Q ss_pred             CCCCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHc-CCC
Q psy5641          55 NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWS-CSY  133 (192)
Q Consensus        55 ~~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~  133 (192)
                      +.++.+|++||.|+||||||||+||+|+++|+||++++...+......       ......++..+|+.|++.||. +..
T Consensus         2 ~sk~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~-------~~~~~~~l~~~l~~l~~~l~~~~~~   74 (348)
T 3nhe_A            2 NSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHH-------GSNAHTALVEEFAKLIQTIWTSSPN   74 (348)
T ss_dssp             ----CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCS-------SCCTTHHHHHHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhcc-------CCCcccHHHHHHHHHHHHHHcCCCC
Confidence            356778999999999999999999999999999999987655433322       112456799999999999994 456


Q ss_pred             CCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCC
Q psy5641         134 NPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKKK  182 (192)
Q Consensus       134 ~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k~  182 (192)
                      ..+.|..|+.+++...+.|.+++||||||||.+||+.||++++....++
T Consensus        75 ~~~~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~  123 (348)
T 3nhe_A           75 DVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRP  123 (348)
T ss_dssp             CEECCHHHHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCC
T ss_pred             CccCHHHHHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCC
Confidence            6778999999999999999999999999999999999999998765443

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=99.95  E-value=2.8e-28  Score=202.99  Aligned_cols=114  Identities=34%  Similarity=0.677  Sum_probs=93.9

Q ss_pred             CCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC-CCCCh
Q psy5641          60 PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY-NPDIS  138 (192)
Q Consensus        60 ~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~~~p  138 (192)
                      .|++||.|+||||||||+||+|+++|+||++++...+......        .+...++..+|+.+++.||.+.. ..+.|
T Consensus         1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~--------~~~~~~l~~~l~~l~~~l~~~~~~~~v~p   72 (355)
T 3i3t_A            1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPG--------GGRAQELTEAFADVIGALWHPDSCEAVNP   72 (355)
T ss_dssp             --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC--------------CHHHHHHHHHHHHTSSCSSCCCBCC
T ss_pred             CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCC--------CCchhHHHHHHHHHHHHHhcCCCCCcccH
Confidence            4899999999999999999999999999999987654433211        12345799999999999999764 67899


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCC
Q psy5641         139 NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKK  181 (192)
Q Consensus       139 ~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k  181 (192)
                      ..|+.++++..+.|.+++||||||||.+|||.||++++...++
T Consensus        73 ~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~  115 (355)
T 3i3t_A           73 TRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRR  115 (355)
T ss_dssp             HHHHHHHHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHHHHHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccC
Confidence            9999999999999999999999999999999999999876554

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.94  E-value=3.2e-27  Score=204.84  Aligned_cols=148  Identities=18%  Similarity=0.272  Sum_probs=110.3

Q ss_pred             ccceecCCCcccccCCCCCcccCCCCcc-------ccCCCCCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcc
Q psy5641          24 HSMSCRRQAYGLVSLSSNDIRVLPPKPL-------LFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQY   96 (192)
Q Consensus        24 ~~~~~lp~~~e~~~~~l~di~~~~p~~~-------~~~~~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~   96 (192)
                      ...||.++++++.|+.+..-.. .|+..       ......+.+|++||.|+||||||||+||+|+|+|+||++++...+
T Consensus        97 ~~~~c~~~~~~v~d~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~  175 (476)
T 3mhs_A           97 GLLFCFKCEDYIGNIDLINDAI-LAKYWDDVCTKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIH  175 (476)
T ss_dssp             CCEEETTTTEEECSCHHHHTGG-GGGGHHHHHHHEECCCGGGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHH
T ss_pred             CcEEeCCCCCCcccHHHHHHHH-hhhccchhhhcccCCCccCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcch
Confidence            4579999999999987632111 22211       122235788999999999999999999999999999999986554


Q ss_pred             hhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCC---------CCChHHHH---HHHHHhcCCCCCCCCCCHHHHH
Q psy5641          97 KIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYN---------PDISNQFK---VIIDKYGTQYRGNNQHDAQEFL  164 (192)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~---------~~~p~~~~---~~~~~~~~~f~~~~QqDA~EFl  164 (192)
                      ......        .....++.+++..++..+|.....         ...|..+.   ..+++..+.|.+++||||||||
T Consensus       176 ~~~~~~--------~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl  247 (476)
T 3mhs_A          176 SNNCKV--------RSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFW  247 (476)
T ss_dssp             HHHCSS--------CCTTTCHHHHHHHHHHHHHSCCCC--------CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHH
T ss_pred             hhhccC--------CCcccchHHHHHHHHHHHhhcccccccccccccccCcchHHHHHHHHHHhccccCCCCCcCHHHHH
Confidence            322211        123467899999999999985422         33455544   4456888999999999999999


Q ss_pred             HHHHHHHHHHHhhhcC
Q psy5641         165 MWLLDKVHEDLNTATK  180 (192)
Q Consensus       165 ~~LL~~L~~~l~~~~~  180 (192)
                      .+||+.||+++.....
T Consensus       248 ~~LLd~L~~~~~~~~~  263 (476)
T 3mhs_A          248 QFIINQIHQSYVLDLP  263 (476)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhhccc
Confidence            9999999999876543

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.94  E-value=6.2e-27  Score=215.19  Aligned_cols=146  Identities=23%  Similarity=0.299  Sum_probs=112.6

Q ss_pred             ccceecCCCcccccCCCCCcc------cCCCCccc-------------c-------CC-----CCCCCCccccccCCchh
Q psy5641          24 HSMSCRRQAYGLVSLSSNDIR------VLPPKPLL-------------F-------AN-----GDKVPGVIGLRNHGNTC   72 (192)
Q Consensus        24 ~~~~~lp~~~e~~~~~l~di~------~~~p~~~~-------------~-------~~-----~~~~~g~~GL~NlGntC   72 (192)
                      ..+||+++++++.++.++++.      +.+|+++.             +       .+     ..+.+|++||.|+||||
T Consensus       275 ~~~~cy~~~~~v~~~~l~~~l~~~gi~~~~~~kt~k~~~el~~~~n~~~g~~~~~~~~g~~l~p~~~~G~~GL~NlGNTC  354 (854)
T 3ihp_A          275 ADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYTGIRNLGNSC  354 (854)
T ss_dssp             CCEEETTTTEECBCTTHHHHHHHTTCCC-----------------------------------CCCSTTCCCBCCCSSCH
T ss_pred             CeEEEccCCCeeeCccHHHHHHHhCcccccccccchhhhhhhhhhccccchhhhhcccCcccccccCCCccceEecCCce
Confidence            558999999999999888732      13332110             0       11     23578999999999999


Q ss_pred             hHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC-------------------
Q psy5641          73 FINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY-------------------  133 (192)
Q Consensus        73 Y~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-------------------  133 (192)
                      ||||+||+|+++|+||++|+.........  .     ......++.++|++|+..||++.+                   
T Consensus       355 YmNSvLQ~L~~~p~fr~~ll~~~~~~~~~--~-----~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~~~~~~~  427 (854)
T 3ihp_A          355 YLNSVVQVLFSIPDFQRKYVDKLEKIFQN--A-----PTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEV  427 (854)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTTHHHHHHH--C-----CSCGGGCHHHHHHHHHHHHHSCC--------------------
T ss_pred             ehhHHHHHHhCcHHHHHHHHhhhhhhhcc--c-----cCCccccHHHHHHHHHHHHhccccccccccccccccccccccC
Confidence            99999999999999999998543221100  1     113456799999999999998653                   


Q ss_pred             -CCCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5641         134 -NPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN  176 (192)
Q Consensus       134 -~~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~  176 (192)
                       ..+.|..|+..+++..+.|.+++||||+|||.+||+.||+++.
T Consensus       428 ~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~  471 (854)
T 3ihp_A          428 QDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCR  471 (854)
T ss_dssp             -CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCT
T ss_pred             CCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhc
Confidence             3678999999999999999999999999999999999999875

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=99.93  E-value=2.9e-26  Score=195.60  Aligned_cols=117  Identities=19%  Similarity=0.246  Sum_probs=94.2

Q ss_pred             CCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q psy5641          57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPD  136 (192)
Q Consensus        57 ~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~  136 (192)
                      ....+++||.|+||||||||+||+|+++|+||++++.........  ... ........++.++|+.||..||.+...++
T Consensus        19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~--~~~-~~~~~~~~~l~~~l~~lf~~l~~~~~~~v   95 (415)
T 1vjv_A           19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVS--NSG-AQDEEIHKQIVIEMKRCFENLQNKSFKSV   95 (415)
T ss_dssp             CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCS--CTT-STTHHHHHHHHHHHHHHHHHHHCC-CCEE
T ss_pred             ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccC--Ccc-cccccchhHHHHHHHHHHHHHhcCCCCcc
Confidence            445678999999999999999999999999999998644321110  000 00000145799999999999999877889


Q ss_pred             ChHHHHHHHHHhcCCCC-------CCCCCCHHHHHHHHHHHHHHHHh
Q psy5641         137 ISNQFKVIIDKYGTQYR-------GNNQHDAQEFLMWLLDKVHEDLN  176 (192)
Q Consensus       137 ~p~~~~~~~~~~~~~f~-------~~~QqDA~EFl~~LL~~L~~~l~  176 (192)
                      .|..|+.+++...+.|.       +++||||+|||.+||+.|++++.
T Consensus        96 ~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~  142 (415)
T 1vjv_A           96 LPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFG  142 (415)
T ss_dssp             CCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhc
Confidence            99999999999989998       89999999999999999999985

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=99.93  E-value=3e-26  Score=194.48  Aligned_cols=112  Identities=21%  Similarity=0.247  Sum_probs=92.3

Q ss_pred             CCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCCh
Q psy5641          59 VPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDIS  138 (192)
Q Consensus        59 ~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p  138 (192)
                      ..+++||.|+||||||||+||+|+|+|+||++++..........       ..+...++.++|+.||..||.+. .++.|
T Consensus        11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~l~~~l~~lf~~l~~~~-~~v~P   82 (404)
T 2ayn_A           11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASG-------EMASAQYITAALRDLFDSMDKTS-SSIPP   82 (404)
T ss_dssp             CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC-------------CHHHHHHHHHHHHHHHHHHHC-SEECC
T ss_pred             cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCC-------CCCcccHHHHHHHHHHHHHhcCC-CcCCh
Confidence            45789999999999999999999999999999986432210100       01234679999999999999875 77889


Q ss_pred             HHHHHHHHHhcCCCC------CCCCCCHHHHHHHHHHHHHHHHhhh
Q psy5641         139 NQFKVIIDKYGTQYR------GNNQHDAQEFLMWLLDKVHEDLNTA  178 (192)
Q Consensus       139 ~~~~~~~~~~~~~f~------~~~QqDA~EFl~~LL~~L~~~l~~~  178 (192)
                      ..|+.+++...+.|.      +++||||||||.+||+.||+++...
T Consensus        83 ~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~  128 (404)
T 2ayn_A           83 IILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAI  128 (404)
T ss_dssp             HHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccc
Confidence            999999999888887      5899999999999999999998653

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=99.92  E-value=1.6e-25  Score=187.55  Aligned_cols=105  Identities=25%  Similarity=0.334  Sum_probs=86.8

Q ss_pred             CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCC
Q psy5641          58 KVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDI  137 (192)
Q Consensus        58 ~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~  137 (192)
                      ..+|++||.|+||||||||+||+|+|+|+||++++......            .....++..+|+.+|..||.+. .++.
T Consensus         2 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~------------~~~~~~~~~~l~~lf~~l~~~~-~~~~   68 (353)
T 1nb8_A            2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------------DDSSKSVPLALQRVFYELQHSD-KPVG   68 (353)
T ss_dssp             CCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT------------SCTTTCHHHHHHHHHHHHHHCS-SCBC
T ss_pred             CCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC------------CcccccHHHHHHHHHHHHhhcC-CCCC
Confidence            46799999999999999999999999999999987432110            0123568899999999999864 5678


Q ss_pred             hHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641         138 SNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT  177 (192)
Q Consensus       138 p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~  177 (192)
                      |..|...++  .+.|.+++||||||||.+||+.||+++..
T Consensus        69 ~~~l~~~~~--~~~~~~~~QqDA~EFl~~LLd~L~~~~~~  106 (353)
T 1nb8_A           69 TKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKG  106 (353)
T ss_dssp             CHHHHHHHT--CCBTTTTTTSCHHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHhhcC--CCCCCcccchhHHHHHHHHHHHHHHHhcC
Confidence            888887764  36799999999999999999999998764

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.90  E-value=4.8e-24  Score=187.08  Aligned_cols=108  Identities=24%  Similarity=0.334  Sum_probs=86.3

Q ss_pred             CCCCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCC
Q psy5641          55 NGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYN  134 (192)
Q Consensus        55 ~~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~  134 (192)
                      +..+.+|++||.|+||||||||+||+|+++|+||++++......            .....++..+|+.+|..||.+. .
T Consensus       168 ~~~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~------------~~~~~~~~~~l~~lf~~l~~~~-~  234 (522)
T 2f1z_A          168 DSKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------------DDSSKSVPLALQRVFYELQHSD-K  234 (522)
T ss_dssp             CTTTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS------------SCTTTCHHHHHHHHHHHHHHCS-S
T ss_pred             CccccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC------------CcccchHHHHHHHHHHHHhcCC-C
Confidence            45678899999999999999999999999999999987432110            0123468899999999999864 5


Q ss_pred             CCChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641         135 PDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNT  177 (192)
Q Consensus       135 ~~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~  177 (192)
                      ++.|..|...++  .+.|.+++|||||||+.+||+.||+++..
T Consensus       235 ~~~~~~l~~~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~  275 (522)
T 2f1z_A          235 PVGTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKG  275 (522)
T ss_dssp             CBCCTTHHHHTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             ccCcHHHHhhcC--CccCCCcccccHHHHHHHHHHHHHhhccC
Confidence            677887776653  36799999999999999999999998864

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=99.69  E-value=5.7e-18  Score=140.69  Aligned_cols=100  Identities=17%  Similarity=0.267  Sum_probs=75.7

Q ss_pred             ccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHH-HHHHHHHHcCCCCCCChHH
Q psy5641          62 VIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQL-AVLLKSIWSCSYNPDISNQ  140 (192)
Q Consensus        62 ~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~l~~~l~~~~~~~~~p~~  140 (192)
                      .+||.|+||||||||+||+|+.+|.+++.++.......          ..+....+..+| ..++..|..   .++.|..
T Consensus         9 p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~----------~~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~   75 (374)
T 2vhf_A            9 KKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKN----------DVEYYSETQELLRTEIVNPLRI---YGYVCAT   75 (374)
T ss_dssp             SCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTT----------SCTTHHHHHHHHHHTTHHHHHH---TSEECHH
T ss_pred             CccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCC----------cchhHHHHHHHHHHHHHHHHhh---cCCCcHH
Confidence            58999999999999999999999999999985421110          001223578888 788888876   6777888


Q ss_pred             HHHHHHHhcCCCC-----CCCCCCHHHHHHHHHHHHHHH
Q psy5641         141 FKVIIDKYGTQYR-----GNNQHDAQEFLMWLLDKVHED  174 (192)
Q Consensus       141 ~~~~~~~~~~~f~-----~~~QqDA~EFl~~LL~~L~~~  174 (192)
                      |+..+++..|+|.     +++||||+||+..||+.|...
T Consensus        76 ~l~~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~  114 (374)
T 2vhf_A           76 KIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRV  114 (374)
T ss_dssp             HHHHHHHHHHHHC--------CCCHHHHHHHHHTTTTCC
T ss_pred             HHHHHHHHhHHHhcccCCCccccCHHHHHHHHHHHHhhc
Confidence            8888876666553     488999999999999988754

>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R

Probab=89.29  E-value=0.39  Score=34.35  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=20.1

Q ss_pred             CccccccCCchhhHHHHHHHHhC
Q psy5641          61 GVIGLRNHGNTCFINAILQCLSH   83 (192)
Q Consensus        61 g~~GL~NlGntCY~NsvLQ~L~~   83 (192)
                      .+.|+.|.-++|++|++||.+-.
T Consensus        12 ~fys~pN~hdncWLNtilQLfry   34 (167)
T 1qmy_A           12 TFYSRPNNHDNAWLNAILQLFRY   34 (167)
T ss_dssp             ECCCCCCSSSCHHHHHHHHHHHH
T ss_pred             ccccCCCCCcchHHHHHHHHHHH
Confidence            57899999999999999997643

>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*

Probab=83.12  E-value=2.7  Score=34.10  Aligned_cols=79  Identities=18%  Similarity=0.320  Sum_probs=48.5

Q ss_pred             CCCCccccccCCchhhHHHHHHHHhCCHH-HHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q psy5641          58 KVPGVIGLRNHGNTCFINAILQCLSHTDI-LAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPD  136 (192)
Q Consensus        58 ~~~g~~GL~NlGntCY~NsvLQ~L~~~~~-fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~  136 (192)
                      ...|++=|+=.-|+||+||++=+|=++.. |+                          .   .+++++..+...+     
T Consensus        98 ~~~G~~vLkq~dNNCwVNaa~l~LQ~~~~~F~--------------------------~---~~l~~aw~~f~~G-----  143 (315)
T 2fe8_A           98 QVGGLTSIKWADNNCYLSSVLLALQQLEVKFN--------------------------A---PALQEAYYRARAG-----  143 (315)
T ss_dssp             EETTEECCCCCTTTHHHHHHHHHHHTSCCCBS--------------------------S---HHHHHHHHHHHHT-----
T ss_pred             EECCEEEEeecCCccHHHHHHHHHHhcCCccC--------------------------C---HHHHHHHHHHhCC-----
Confidence            34567777778899999999776633211 11                          0   1233333333333     


Q ss_pred             ChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q psy5641         137 ISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKV  171 (192)
Q Consensus       137 ~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L  171 (192)
                      .|..|.+.+-.... ...++-.||+++|..|++.-
T Consensus       144 d~~~FVa~~Ya~~~-~~~G~~gDa~~~L~~Ll~~~  177 (315)
T 2fe8_A          144 DAANFCALILAYSN-KTVGELGDVRETMTHLLQHA  177 (315)
T ss_dssp             CCHHHHHHHHHHTT-CCTTSCCCHHHHHHHHHTTB
T ss_pred             ChHHHHHHHHHhcC-CCCCCCccHHHHHHHHHhcC
Confidence            36677766644433 44788999999999985543

>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}

Probab=82.83  E-value=1.6  Score=33.39  Aligned_cols=71  Identities=23%  Similarity=0.307  Sum_probs=45.2

Q ss_pred             CCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChH
Q psy5641          60 PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISN  139 (192)
Q Consensus        60 ~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~  139 (192)
                      .|++=|+=.-|+||+||++=+|=++...                                     +..+|.. +..-.|.
T Consensus        11 nG~~vLkq~dNNCwVNaa~l~LQ~~~~~-------------------------------------~~~aw~~-f~~Gd~~   52 (211)
T 3mp2_A           11 NGKIILKQGDNNCWINACCYQLQAFDFF-------------------------------------NNEAWEK-FKKGDVM   52 (211)
T ss_dssp             TTEEEECCCTTCHHHHHHHHHHTTCTTC-------------------------------------CCHHHHH-HTTTCCH
T ss_pred             CCEEEEEccCCCcHHHHHHHHHHhcChh-------------------------------------HHHHHHH-HhCCChH
Confidence            4666677778999999998776443322                                     1112221 2333466


Q ss_pred             HHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q psy5641         140 QFKVIIDKYGTQYRGNNQHDAQEFLMWLLD  169 (192)
Q Consensus       140 ~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~  169 (192)
                      .|.+.+-... ....++-.||+++|..|+.
T Consensus        53 ~fV~~~Ya~~-~~~~G~~gDa~~~L~~Ll~   81 (211)
T 3mp2_A           53 DFVNLCYAAT-TLARGHSGDAEYLLELMLN   81 (211)
T ss_dssp             HHHHHHHHHH-TCCTTSCCCHHHHHHHHHT
T ss_pred             HHHHHHHHHc-CCCCCCCcCHHHHHHHHHH
Confidence            6665554332 3557889999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	192
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	1e-27
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	3e-22
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	7e-19
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	4e-16
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	1e-15

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 1e-27
 Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 10/145 (6%)

Query: 43  IRVLPPKPLLFANGDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSR 102
           IR L P       G   P + GLRN GNTC++N+ILQCL +   LA+YF  + Y+ D++R
Sbjct: 1   IRNLNP-----VFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINR 55

Query: 103 RNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQE 162
            N       G KGEV E+  +++K++W+  Y       FK+ I K   Q+ G +Q D+QE
Sbjct: 56  SNLL-----GHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQE 110

Query: 163 FLMWLLDKVHEDLNTATKKKYKTIK 187
            L++L+D +HEDLN A  +K    +
Sbjct: 111 LLLFLMDGLHEDLNKADNRKRYKEE 135

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (221), Expect = 3e-22
 Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 8/128 (6%)

Query: 61  GVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQ 120
           G+ GLRN GNTCF+N+ILQCLS+T  L +Y +   Y  D+   +            + E+
Sbjct: 2   GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSN-------AHTALVEE 54

Query: 121 LAVLLKSIWSCSYNPDIS-NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTAT 179
            A L+++IW+ S N  +S ++FK  I +Y  ++ G NQ DAQEFL +LLD +H ++N  T
Sbjct: 55  FAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVT 114

Query: 180 KKKYKTIK 187
            +     +
Sbjct: 115 LRPKSNPE 122

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (198), Expect = 7e-19
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 12/127 (9%)

Query: 63  IGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLA 122
            GL N GNTC++NA +QC+     L +     +Y   +    +       +   +T  L 
Sbjct: 5   CGLTNLGNTCYMNATVQCIRSVPELKDAL--KRYAGALRASGEM-----ASAQYITAALR 57

Query: 123 VLLKSIWSCSYNPDISNQFKVIIDKY-----GTQYRGNNQHDAQEFLMWLLDKVHEDLNT 177
            L  S+   S +       + +   +       +     Q DA E  + ++  + + L  
Sbjct: 58  DLFDSMDKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEA 117

Query: 178 ATKKKYK 184
                 K
Sbjct: 118 IEDDSVK 124

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.9 bits (177), Expect = 4e-16
 Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 10/137 (7%)

Query: 63  IGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLA 122
           +G +N GNTC++NA LQ L   + L +  +       +   +   ++      ++  ++ 
Sbjct: 7   VGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGV---SNSGAQDEEIHKQIVIEMK 63

Query: 123 VLLKSIWSCSYNPDISNQFKVIIDKYGTQYR-------GNNQHDAQEFLMWLLDKVHEDL 175
              +++ + S+   +       + K   Q+           Q DA+E    L   +    
Sbjct: 64  RCFENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVF 123

Query: 176 NTATKKKYKTIKVKTPK 192
                + ++     T K
Sbjct: 124 GDKFSEDFRIQFKTTIK 140

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (174), Expect = 1e-15
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 15/119 (12%)

Query: 58  KVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEV 117
           K  G +GL+N G TC++N++LQ L  T+ L +   +   + D S ++            V
Sbjct: 2   KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKS------------V 49

Query: 118 TEQLAVLLKSIWSCSYNPDISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLN 176
              L  +   +             K    +         QHD QE    LLD V   + 
Sbjct: 50  PLALQRVFYELQHSDKPVGTKKLTKSFGWE---TLDSFMQHDVQELCRVLLDNVENKMK 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	99.94
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	99.92
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	99.91
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	99.9
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	99.87
d1qmya_	156	FMDV leader protease {Foot-and-mouth disease virus	91.78

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.3e-27  Score=192.06  Aligned_cols=121  Identities=43%  Similarity=0.814  Sum_probs=103.1

Q ss_pred             CCCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCC
Q psy5641          56 GDKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNP  135 (192)
Q Consensus        56 ~~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~  135 (192)
                      ++..||++||.|+||||||||+||+|+++|+||++++...+........     ..+....+..+|+.|++.|+.+....
T Consensus         9 ~~~~~g~vGL~N~GNtCYlNSvLQ~L~~ip~f~~~l~~~~~~~~~~~~~-----~~~~~~~l~~~l~~l~~~l~~~~~~~   83 (348)
T d2gfoa1           9 GGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSN-----LLGHKGEVAEEFGIIMKALWTGQYRY   83 (348)
T ss_dssp             CCSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTC-----TTSCTTHHHHHHHHHHHHHHHSCEEE
T ss_pred             CCCCCCeECCccCCchhHHHHHHHHHHcCHHHHHHHHhccccccccccc-----cccchHHHHHHHHHHHHHHHhCCCCc
Confidence            5678999999999999999999999999999999998665544433211     12344679999999999999998888


Q ss_pred             CChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCC
Q psy5641         136 DISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATKK  181 (192)
Q Consensus       136 ~~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~k  181 (192)
                      +.|..|...+++..+.+.++.||||+||+.++|+.|++++......
T Consensus        84 i~~~~~~~~~~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~  129 (348)
T d2gfoa1          84 ISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR  129 (348)
T ss_dssp             ECCHHHHHHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC-
T ss_pred             cccccccccccccCccccCcccCCHHHHHHHHHHHHHHHhhhcccc
Confidence            8999999999999999999999999999999999999998765443

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-25  Score=181.90  Aligned_cols=114  Identities=41%  Similarity=0.732  Sum_probs=94.8

Q ss_pred             CCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCC-CCCCh
Q psy5641          60 PGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSY-NPDIS  138 (192)
Q Consensus        60 ~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~-~~~~p  138 (192)
                      .|++||.|+||||||||+||+|+++|+||++++...+........       ....++...+..+++.|+.... ..+.|
T Consensus         1 ~g~~GL~N~GNtCYlNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~-------~~~~~l~~~l~~l~~~l~~~~~~~~i~p   73 (336)
T d2hd5a1           1 QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGS-------NAHTALVEEFAKLIQTIWTSSPNDVVSP   73 (336)
T ss_dssp             CCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTHHHHC---CC-------SSCCHHHHHHHHHHHHHHTSCTTCEECC
T ss_pred             CCccCCcCCCcchHHHHHHHHHHcCHHHHHHHHhcchhhhcccCC-------ChhHHHHHHHHHHHHHHHhCCCCCCCCc
Confidence            389999999999999999999999999999998766554443322       2446799999999999998764 45678


Q ss_pred             HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcC
Q psy5641         139 NQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTATK  180 (192)
Q Consensus       139 ~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~~~  180 (192)
                      ..++..++...+.|..+.||||+||+.++++.|++++.....
T Consensus        74 ~~~~~~~~~~~~~~~~~~q~Da~Ef~~~lld~l~~~l~~~~~  115 (336)
T d2hd5a1          74 SEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTL  115 (336)
T ss_dssp             HHHHHHHHHHCGGGSSCCCBCHHHHHHHHHHHHHHHTCCC--
T ss_pred             hhhhcccccccccccCcccccHHHHHHHHHHHHHHHHhhhhc
Confidence            999999999999999999999999999999999999875443

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-24  Score=178.79  Aligned_cols=107  Identities=24%  Similarity=0.331  Sum_probs=87.3

Q ss_pred             CCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCC
Q psy5641          57 DKVPGVIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPD  136 (192)
Q Consensus        57 ~~~~g~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~  136 (192)
                      ++.+|++||.|+||||||||+||+|+++|+||++++......            .....++..+++.+|..|+.+. .++
T Consensus         1 ~~~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~------------~~~~~~~~~~l~~lf~~l~~~~-~~~   67 (347)
T d1nbfa_           1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------------DDSSKSVPLALQRVFYELQHSD-KPV   67 (347)
T ss_dssp             CCSSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTT------------CCTTTCHHHHHHHHHHHHHHCS-SCB
T ss_pred             CCCCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccC------------CcccchHHHHHHHHHHHHhcCC-CCc
Confidence            356899999999999999999999999999999997543211            1234568899999999999864 567


Q ss_pred             ChHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhhh
Q psy5641         137 ISNQFKVIIDKYGTQYRGNNQHDAQEFLMWLLDKVHEDLNTA  178 (192)
Q Consensus       137 ~p~~~~~~~~~~~~~f~~~~QqDA~EFl~~LL~~L~~~l~~~  178 (192)
                      .|..+...+.  .+.|..+.||||+||+.+||+.|++++...
T Consensus        68 ~~~~~~~~~~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~  107 (347)
T d1nbfa_          68 GTKKLTKSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT  107 (347)
T ss_dssp             CCHHHHHHTT--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHhhc--hhhcchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            7887776663  345888999999999999999999998753

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1e-24  Score=179.87  Aligned_cols=113  Identities=19%  Similarity=0.275  Sum_probs=88.0

Q ss_pred             ccccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHHH
Q psy5641          62 VIGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQF  141 (192)
Q Consensus        62 ~~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~~  141 (192)
                      ++||.|+||||||||+||+|+++|+||++++.............   ........++.+|.+++..||.+....+.|..|
T Consensus         6 p~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~l~~l~~~l~~~~~~~i~p~~~   82 (397)
T d1vjva_           6 PVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGA---QDEEIHKQIVIEMKRCFENLQNKSFKSVLPVVL   82 (397)
T ss_dssp             CCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTS---TTHHHHHHHHHHHHHHHHHHHCC-CCEECCHHH
T ss_pred             CCCCCCCCccHHHHHHHHHHHcCHHHHHHHHhCCcccccccccc---cccchHHHHHHHHHHHHHHHHhCCCCccCHHHH
Confidence            38999999999999999999999999999985443222111000   000123468899999999999998888999999


Q ss_pred             HHHHHHhcCCC-------CCCCCCCHHHHHHHHHHHHHHHHhh
Q psy5641         142 KVIIDKYGTQY-------RGNNQHDAQEFLMWLLDKVHEDLNT  177 (192)
Q Consensus       142 ~~~~~~~~~~f-------~~~~QqDA~EFl~~LL~~L~~~l~~  177 (192)
                      ...++...+.|       .++.||||||||.+|++.|++++..
T Consensus        83 ~~~l~~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~l~~  125 (397)
T d1vjva_          83 LNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD  125 (397)
T ss_dssp             HHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHhhhhccccccccccccccHHHHHHHHHHHHHHHhcc
Confidence            99998766554       5688999999999999999999864

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.5e-23  Score=170.11  Aligned_cols=111  Identities=20%  Similarity=0.247  Sum_probs=85.3

Q ss_pred             cccccCCchhhHHHHHHHHhCCHHHHHHHhhhcchhhhhcccccCCCCCCCcchHHHHHHHHHHHHHcCCCCCCChHHHH
Q psy5641          63 IGLRNHGNTCFINAILQCLSHTDILAEYFVLDQYKIDMSRRNKFNSKKYGTKGEVTEQLAVLLKSIWSCSYNPDISNQFK  142 (192)
Q Consensus        63 ~GL~NlGntCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~p~~~~  142 (192)
                      +||.|+||||||||+||+|+++|+||++++.......  ..     ........+..+|+.|+..|+.. ...+.|..++
T Consensus         5 ~GL~N~GNtCY~NSvLQ~L~~ip~~~~~l~~~~~~~~--~~-----~~~~~~~~l~~~l~~l~~~l~~~-~~~~~p~~~~   76 (383)
T d2ayna1           5 CGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALR--AS-----GEMASAQYITAALRDLFDSMDKT-SSSIPPIILL   76 (383)
T ss_dssp             CEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC-------------CHHHHHHHHHHHHHHHHHHH-CSEECCHHHH
T ss_pred             cCcCCCCchhHHHHHHHHHHccHHHHHHHHhhhhhcc--CC-----CccccHHHHHHHHHHHHHHHhcC-CCccCHHHHH
Confidence            8999999999999999999999999999975432111  10     01123456889999999999875 3566788999


Q ss_pred             HHHHHhcCCC------CCCCCCCHHHHHHHHHHHHHHHHhhhcCC
Q psy5641         143 VIIDKYGTQY------RGNNQHDAQEFLMWLLDKVHEDLNTATKK  181 (192)
Q Consensus       143 ~~~~~~~~~f------~~~~QqDA~EFl~~LL~~L~~~l~~~~~k  181 (192)
                      ..+....+.|      .++.||||+||+.++|+.|++++......
T Consensus        77 ~~l~~~~~~~~~~~~~~~~~QqDa~Ef~~~ll~~l~~~~~~~~~~  121 (383)
T d2ayna1          77 QFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDD  121 (383)
T ss_dssp             HHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC
T ss_pred             HHHHHHhHhhccccccCchhhhhHHHHHHHHHHHHHHHHHhhhcc
Confidence            9887665544      45669999999999999999988764443

>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: FMDV leader protease
domain: FMDV leader protease
species: Foot-and-mouth disease virus [TaxId: 12110]

Probab=91.78  E-value=0.067  Score=36.23  Aligned_cols=27  Identities=41%  Similarity=0.512  Sum_probs=20.7

Q ss_pred             CCCCCCCccccccCCchhhHHHHHHHHh
Q psy5641          55 NGDKVPGVIGLRNHGNTCFINAILQCLS   82 (192)
Q Consensus        55 ~~~~~~g~~GL~NlGntCY~NsvLQ~L~   82 (192)
                      ++++..-..|.+|..| |++|++||.+-
T Consensus         7 ngekk~f~s~pnnhdN-cWLN~ilQLfr   33 (156)
T d1qmya_           7 NGEKKTFYSRPNNHDN-AWLNAILQLFR   33 (156)
T ss_dssp             TSCEEECCCCCCSSSC-HHHHHHHHHHH
T ss_pred             cCccceeecCCCcccc-hHHHHHHHHHH
Confidence            4455555677888888 99999999764