Psyllid ID: psy5646

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQTPVNMT
Secondary Structure (PSIPRED)
ccccccccccEEEEcccccccHHHHHHHHHccccEEEEEEEEEEEEccccccccccEEEEEEEEEEEEccccccccEEEEEEEEEccEEEEEEcEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccEEEEcccccccHHHHHHHHHccccccEEEEEEEcccccccccccccEEEEEEEEEEEEcccccccEEEEEEEEcccccEEEEccEEEEEccccccc
Coil and Loop (DISEMBL)
mgklykdedavlswnghgtkgSQAIVKYIselppcdhelksmdihrlpeEAAQNQIAYLISTSGTVVYknmkktgfnqNFIISAEGARWKIISDVFrlqqtpvnmt
Flexible Loop (DISEMBL)
MGKLYKDEDAVLswnghgtkgsQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDvfrlqqtpvnmt
Low Complexity Region (SEG)
MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQTPVNMT
Disordered region (IsUnstruct)
**********VLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL********
Disordered Region (DISOPRED)
MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQTPV***
Disordered Region (DISEMBL)
MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQTPVNMT
Disordered Region (DISPRO)
*GKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQTP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQTPVNMT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q9V3H8	133	NTF2-related export prote	yes	N/A	0.933	0.744	0.43	5e-21
Q5ZLH0	141	NTF2-related export prote	yes	N/A	0.924	0.695	0.359	4e-14
Q9NPJ8	142	NTF2-related export prote	yes	N/A	0.924	0.690	0.368	7e-14
A6QNX3	142	NTF2-related export prote	yes	N/A	0.924	0.690	0.368	9e-14
Q3UNA4	142	NTF2-related export prote	yes	N/A	0.924	0.690	0.359	7e-13
B2GV77	142	NTF2-related export prote	yes	N/A	0.905	0.676	0.366	8e-13
Q2KIW0	140	NTF2-related export prote	no	N/A	0.924	0.7	0.330	4e-12
Q9QZV9	140	NTF2-related export prote	no	N/A	0.924	0.7	0.320	9e-12
Q9UKK6	140	NTF2-related export prote	no	N/A	0.924	0.7	0.320	1e-11
Q9U757	137	NTF2-related export prote	yes	N/A	0.792	0.613	0.305	1e-08

>sp|Q9V3H8|NXT1_DROME NTF2-related export protein OS=Drosophila melanogaster GN=Nxt1 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 67/100 (67%), Gaps = 1/100 (1%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           +G+LY D +A LSWNG+G  G Q I  Y  ELP  +H+L ++D   + ++A  NQ+AYLI
Sbjct: 34  IGRLYLD-NATLSWNGNGAIGRQMIESYFQELPSSNHQLNTLDAQPIVDQAVSNQLAYLI 92

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQ 100
             SG+V + + +   F Q FI++AE  +WK++SD +R+Q+
Sbjct: 93  MASGSVKFADQQLRKFQQTFIVTAENDKWKVVSDCYRMQE 132

Stimulator of protein export for NES-containing proteins. Also plays a role in the nuclear export of U1 snRNA, tRNA, and mRNA.
Drosophila melanogaster (taxid: 7227)

>sp|Q5ZLH0|NXT2_CHICK NTF2-related export protein 2 OS=Gallus gallus GN=NXT2 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 5/103 (4%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           + +LY D+ A L WNG+   G +A+ ++   LP  + ++  +D   + E+A Q+Q   L+
Sbjct: 36  LTRLYLDK-ATLIWNGNAVSGQEALNEFFEMLPSSEFQVNVLDCQPVHEQATQSQTTVLV 94

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGAR----WKIISDVFRLQ 99
            T GTV +   K+  FNQNF+++A+       WKI SD FR Q
Sbjct: 95  VTCGTVKFDGNKQRYFNQNFLLTAQATSNSTVWKIASDCFRFQ 137

Regulator of protein export for NES-containing proteins. Also plays a role in mRNA nuclear export.

Gallus gallus (taxid: 9031)

>sp|Q9NPJ8|NXT2_HUMAN NTF2-related export protein 2 OS=Homo sapiens GN=NXT2 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 5/103 (4%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           + +LY D+ A L WNG+   G  A+  +   LP  + ++  +D   + E+A Q+Q   L+
Sbjct: 36  LTRLYLDK-ATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLV 94

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEG----ARWKIISDVFRLQ 99
            TSGTV +   K+  FNQNF+++A+       WKI SD FR Q
Sbjct: 95  VTSGTVKFDGNKQHFFNQNFLLTAQSTPNNTVWKIASDCFRFQ 137

Regulator of protein export for NES-containing proteins. Also plays a role in mRNA nuclear export.

Homo sapiens (taxid: 9606)

>sp|A6QNX3|NXT2_BOVIN NTF2-related export protein 2 OS=Bos taurus GN=NXT2 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 5/103 (4%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           + +LY D+ A L WNG+   G +A+  +   LP  + ++  +D   + E+A Q+Q   L+
Sbjct: 36  LTRLYLDK-ATLIWNGNVVTGLEALANFFDMLPSSEFQVNMLDCQPVHEQATQSQTTVLV 94

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGAR----WKIISDVFRLQ 99
            TSGTV +   K+  FNQNF+++A+       WKI SD FR Q
Sbjct: 95  VTSGTVKFDGNKQHYFNQNFLLTAQTTANNTVWKIASDCFRFQ 137

Regulator of protein export for NES-containing proteins. Also plays a role in mRNA nuclear export.

Bos taurus (taxid: 9913)

>sp|Q3UNA4|NXT2_MOUSE NTF2-related export protein 2 OS=Mus musculus GN=Nxt2 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 5/103 (4%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           + +LY D+ A L WNG+   G +A+  +   LP  + ++  +D   + E+A Q Q   L+
Sbjct: 36  LVRLYLDK-ATLIWNGNVVTGLEALANFFEMLPSSEFQINMLDCQPVHEQATQCQTTVLV 94

Query: 61  STSGTVVYKNMKKTGFNQNFIISAE----GARWKIISDVFRLQ 99
            TSG V +   K+  FNQNF+++A+       WKI SD FR Q
Sbjct: 95  VTSGVVKFDGNKQHFFNQNFLLTAQSTPNSTVWKIASDCFRFQ 137

Regulator of protein export for NES-containing proteins. Also plays a role in mRNA nuclear export.

Mus musculus (taxid: 10090)

>sp|B2GV77|NXT2_RAT NTF2-related export protein 2 OS=Rattus norvegicus GN=Nxt2 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 5/101 (4%)

Query: 3   KLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLIST 62
           +LY D+ A L WNG+   G +A+  +   LP  + ++  +D   + E+A Q Q   L+ T
Sbjct: 38  RLYLDK-ATLIWNGNVVTGLEALANFFEMLPSSEFQINMLDCQPVHEQATQYQTTVLVVT 96

Query: 63  SGTVVYKNMKKTGFNQNFIISAE----GARWKIISDVFRLQ 99
           SG V +   K+  FNQNF+++A+       WKI SD FR Q
Sbjct: 97  SGVVKFDGNKQHFFNQNFLLTAQSTPNSTVWKIASDCFRFQ 137

Regulator of protein export for NES-containing proteins. Also plays a role in mRNA nuclear export.

Rattus norvegicus (taxid: 10116)

>sp|Q2KIW0|NXT1_BOVIN NTF2-related export protein 1 OS=Bos taurus GN=NXT1 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 5/103 (4%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           + +LY    A L WNG+   G +++ ++   LP  + ++  +D   + +EA  +Q   L+
Sbjct: 35  LSRLYMGT-ATLVWNGNAVSGQESLSEFFEMLPSSEFQINVVDCQPVHDEATPSQTTVLV 93

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGAR----WKIISDVFRLQ 99
              GTV ++  K+  FNQNFI++A+ +     WKI SD FR Q
Sbjct: 94  VICGTVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQ 136

Stimulator of protein export for NES-containing proteins. Also plays a role in the nuclear export of U1 snRNA, tRNA, and mRNA. The NXF1-NXT1 heterodimer is involved in the export of HSP70 mRNA in conjunction with ALYREF/THOC4 and THOC5.

Bos taurus (taxid: 9913)

>sp|Q9QZV9|NXT1_MOUSE NTF2-related export protein 1 OS=Mus musculus GN=Nxt1 PE=1 SV=2

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 5/103 (4%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           + +LY    A L WNG+   G +++ ++   LP  + ++  +D   + ++A  +Q   L+
Sbjct: 35  LSRLYMGT-ATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDDATPSQTTVLV 93

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGAR----WKIISDVFRLQ 99
              GTV ++  K+  FNQNFI++A+ +     WKI SD FR Q
Sbjct: 94  VICGTVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQ 136

Stimulator of protein export for NES-containing proteins. Also plays a role in the nuclear export of U1 snRNA, tRNA, and mRNA. The NXF1-NXT1 heterodimer is involved in the export of HSP70 mRNA in conjunction with ALYREF/THOC4 and THOC5.

Mus musculus (taxid: 10090)

>sp|Q9UKK6|NXT1_HUMAN NTF2-related export protein 1 OS=Homo sapiens GN=NXT1 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 5/103 (4%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           + +LY    A L WNG+   G +++ ++   LP  + ++  +D   + +EA  +Q   L+
Sbjct: 35  LSRLYMGT-ATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLV 93

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGAR----WKIISDVFRLQ 99
              G+V ++  K+  FNQNFI++A+ +     WKI SD FR Q
Sbjct: 94  VICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQ 136

Stimulator of protein export for NES-containing proteins. Also plays a role in the nuclear export of U1 snRNA, tRNA, and mRNA. The NXF1-NXT1 heterodimer is involved in the export of HSP70 mRNA in conjunction with ALYREF/THOC4 and THOC5.

Homo sapiens (taxid: 9606)

>sp|Q9U757|NXT1_CAEEL NTF2-related export protein OS=Caenorhabditis elegans GN=nxt-1 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 14  WNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQI-AYLISTSGTVVYKNMK 72
           WNG+   G  +I +++  LP   H+++S+D  RLPE    +     L++ +G V      
Sbjct: 50  WNGNPINGYDSICEFMKALPSTQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDGDS 109

Query: 73  KTGFNQNFIISAEGARWKIISDVFR 97
           K  F Q  ++  E  ++K+ SD FR
Sbjct: 110 KRAFTQTLLLGVEDGKYKVKSDRFR 134

Stimulator of protein export for NES-containing proteins. Also plays a role in the nuclear export of U1 snRNA, tRNA, and mRNA.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
195347206	133	GM15511 [Drosophila sechellia] gi|195586	0.933	0.744	0.44	2e-19
19922840	133	NTF2-related export protein 1 [Drosophil	0.933	0.744	0.43	2e-19
125806589	135	GA11789 [Drosophila pseudoobscura pseudo	0.962	0.755	0.427	1e-18
189235963	292	PREDICTED: similar to p15-2a protein [Tr	0.971	0.352	0.423	1e-18
270003253	142	hypothetical protein TcasGA2_TC002461 [T	0.971	0.725	0.423	1e-18
194752693	135	GF12459 [Drosophila ananassae] gi|190619	0.962	0.755	0.427	2e-18
194885630	133	GG19997 [Drosophila erecta] gi|190659654	0.933	0.744	0.44	3e-18
38047919	132	similar to Drosophila melanogaster Nxt1,	0.933	0.75	0.43	1e-17
195489313	133	Nxt1 [Drosophila yakuba] gi|194178784|gb	0.933	0.744	0.43	1e-17
195133480	135	GI16389 [Drosophila mojavensis] gi|19390	0.962	0.755	0.432	3e-17

>gi|195347206|ref|XP_002040145.1| GM15511 [Drosophila sechellia] gi|195586166|ref|XP_002082849.1| GD25012 [Drosophila simulans] gi|194135494|gb|EDW57010.1| GM15511 [Drosophila sechellia] gi|194194858|gb|EDX08434.1| GD25012 [Drosophila simulans]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 65/100 (65%), Gaps = 1/100 (1%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           +G+LY D +A LSWNG+G  G Q I  Y  ELP   H+L ++D   + ++A  NQ+AYLI
Sbjct: 34  IGRLYLD-NATLSWNGNGATGRQMIESYFRELPSSKHQLNTLDAQPIVDQAVSNQLAYLI 92

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQ 100
             SG+V + +     F Q FI++AE  +WK++SD +RLQ+
Sbjct: 93  MASGSVKFSDQPLRKFQQTFIVTAENEKWKVVSDCYRLQE 132

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19922840|ref|NP_611833.1| NTF2-related export protein 1 [Drosophila melanogaster] gi|18203549|sp|Q9V3H8.1|NXT1_DROME RecName: Full=NTF2-related export protein; AltName: Full=p15 gi|5880869|gb|AAD54944.1|AF156959_1 NTF2-related export protein NXT1 [Drosophila melanogaster] gi|7291644|gb|AAF47066.1| NTF2-related export protein 1 [Drosophila melanogaster] gi|17945644|gb|AAL48872.1| RE28995p [Drosophila melanogaster] gi|220948300|gb|ACL86693.1| Nxt1-PA [synthetic construct]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 67/100 (67%), Gaps = 1/100 (1%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           +G+LY D +A LSWNG+G  G Q I  Y  ELP  +H+L ++D   + ++A  NQ+AYLI
Sbjct: 34  IGRLYLD-NATLSWNGNGAIGRQMIESYFQELPSSNHQLNTLDAQPIVDQAVSNQLAYLI 92

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQ 100
             SG+V + + +   F Q FI++AE  +WK++SD +R+Q+
Sbjct: 93  MASGSVKFADQQLRKFQQTFIVTAENDKWKVVSDCYRMQE 132

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125806589|ref|XP_001357529.1| GA11789 [Drosophila pseudoobscura pseudoobscura] gi|195148928|ref|XP_002015414.1| GL11070 [Drosophila persimilis] gi|54635250|gb|EAL24653.1| GA11789 [Drosophila pseudoobscura pseudoobscura] gi|194109261|gb|EDW31304.1| GL11070 [Drosophila persimilis]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           +G+LY D +AV SWNG+G  G Q I +Y  ELP   H++ ++D   + + A   Q+ YL+
Sbjct: 34  LGRLYLD-NAVFSWNGNGANGRQMIERYFLELPSSSHQMNTLDAQPILDAAVGIQLTYLV 92

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQTPV 103
             SGTV Y++     F Q FI++AEG +WKI SD +RLQ+  +
Sbjct: 93  MASGTVKYQDQPTRNFQQAFIVTAEGDKWKIASDCYRLQEVTL 135

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235963|ref|XP_969322.2| PREDICTED: similar to p15-2a protein [Tribolium castaneum]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 1/104 (0%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           M KLY D   +L+WNG+G  G++ I K+  +LP  DH + ++D   + + A   Q+ ++I
Sbjct: 187 MSKLYLDS-GLLAWNGNGVNGNERIQKFFIDLPTSDHIINTLDAQPVLDSAVNGQLTFMI 245

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQTPVN 104
             SGTV Y++     F QNFII+A+G +WKI+SD FRLQ+   N
Sbjct: 246 QVSGTVRYQDRVPKSFQQNFIITAQGDKWKIVSDCFRLQEPLTN 289

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003253|gb|EEZ99700.1| hypothetical protein TcasGA2_TC002461 [Tribolium castaneum]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 1/104 (0%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           M KLY D   +L+WNG+G  G++ I K+  +LP  DH + ++D   + + A   Q+ ++I
Sbjct: 37  MSKLYLDS-GLLAWNGNGVNGNERIQKFFIDLPTSDHIINTLDAQPVLDSAVNGQLTFMI 95

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQTPVN 104
             SGTV Y++     F QNFII+A+G +WKI+SD FRLQ+   N
Sbjct: 96  QVSGTVRYQDRVPKSFQQNFIITAQGDKWKIVSDCFRLQEPLTN 139

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194752693|ref|XP_001958654.1| GF12459 [Drosophila ananassae] gi|190619952|gb|EDV35476.1| GF12459 [Drosophila ananassae]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           MG+LY D +A+ SWNG+G  G + I +Y  ELP   H + ++D   + + A  NQ+ YLI
Sbjct: 34  MGRLYID-NAIFSWNGNGATGREMIERYFMELPSSSHMMTTLDAQPIIDSAVANQLTYLI 92

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQTPV 103
             SGTV + +     F Q+FI++AE  +WKI SD +RLQ+  V
Sbjct: 93  MASGTVKFVDQTLRNFQQSFIVTAENDKWKIASDCYRLQEAVV 135

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194885630|ref|XP_001976467.1| GG19997 [Drosophila erecta] gi|190659654|gb|EDV56867.1| GG19997 [Drosophila erecta]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 63/100 (63%), Gaps = 1/100 (1%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           +G+LY D +A LSWNG+G  G Q I  Y  ELP  +H+L ++D   + + A  NQ+ YLI
Sbjct: 34  IGRLYLD-NATLSWNGNGATGRQMIENYFLELPTSNHQLNTLDAQPILDPAVANQLTYLI 92

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQ 100
             SGTV + +     F Q FI++AE  +WK+ SD +RLQ+
Sbjct: 93  MASGTVKFAHQPIRNFQQTFIVTAENDKWKVASDCYRLQE 132

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|38047919|gb|AAR09862.1| similar to Drosophila melanogaster Nxt1, partial [Drosophila yakuba]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 62/100 (62%), Gaps = 1/100 (1%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           +G+LY D +A LSWNG+G  G Q I  Y  ELP  +H+L ++D   + + A  NQ+ YLI
Sbjct: 33  IGRLYLD-NATLSWNGNGATGRQMIESYFLELPTSNHQLNTLDAQPILDPAVANQLTYLI 91

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQ 100
              GTV + +     F Q FI++AE  +WK+ SD +RLQ+
Sbjct: 92  MAGGTVKFAHQPIRNFQQTFIVTAENDKWKVASDCYRLQE 131

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195489313|ref|XP_002092683.1| Nxt1 [Drosophila yakuba] gi|194178784|gb|EDW92395.1| Nxt1 [Drosophila yakuba]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 62/100 (62%), Gaps = 1/100 (1%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           +G+LY D +A LSWNG+G  G Q I  Y  ELP  +H+L ++D   + + A  NQ+ YLI
Sbjct: 34  IGRLYLD-NATLSWNGNGATGRQMIESYFLELPTSNHQLNTLDAQPILDPAVANQLTYLI 92

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQ 100
              GTV + +     F Q FI++AE  +WK+ SD +RLQ+
Sbjct: 93  MAGGTVKFAHQPIRNFQQTFIVTAENDKWKVASDCYRLQE 132

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195133480|ref|XP_002011167.1| GI16389 [Drosophila mojavensis] gi|193907142|gb|EDW06009.1| GI16389 [Drosophila mojavensis]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           MG+LY D  A  SWNG+G +G + I +Y  ELP   H+L ++D   + + A   Q  Y+I
Sbjct: 34  MGRLYIDT-ATFSWNGNGAQGRETIERYFLELPSSRHQLTTLDSQPILDPAVGGQTTYII 92

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQTPVN 104
             SGTV Y       F Q+F+I+AE  +WKI SD +RLQ+ P+N
Sbjct: 93  LASGTVKYAEQSMRTFQQSFVITAENDKWKIASDCYRLQE-PLN 135

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
FB|FBgn0028411	133	Nxt1 "NTF2-related export prot	0.933	0.744	0.43	2.1e-20
UNIPROTKB|F1ND17	136	NXT2 "NTF2-related export prot	0.905	0.705	0.366	7.9e-14
UNIPROTKB|Q5ZLH0	141	NXT2 "NTF2-related export prot	0.905	0.680	0.366	7.9e-14
UNIPROTKB|Q9NPJ8	142	NXT2 "NTF2-related export prot	0.905	0.676	0.376	7.9e-14
UNIPROTKB|A6QNX3	142	NXT2 "NTF2-related export prot	0.905	0.676	0.376	1e-13
UNIPROTKB|K7GMM6	114	LOC100521422 "Uncharacterized	0.905	0.842	0.376	1.6e-13
UNIPROTKB|K7GNP4	142	LOC100521422 "Uncharacterized	0.905	0.676	0.376	1.6e-13
UNIPROTKB|F1RWU7	144	LOC100521422 "Uncharacterized	0.905	0.666	0.378	2.7e-13
ZFIN|ZDB-GENE-050521-1	143	nxt2 "nuclear transport factor	0.905	0.671	0.339	2.7e-13
RGD|1560204	142	Nxt2 "nuclear transport factor	0.905	0.676	0.366	4.4e-13

FB|FBgn0028411 Nxt1 "NTF2-related export protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 43/100 (43%), Positives = 67/100 (67%)

Query:     1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
             +G+LY D +A LSWNG+G  G Q I  Y  ELP  +H+L ++D   + ++A  NQ+AYLI
Sbjct:    34 IGRLYLD-NATLSWNGNGAIGRQMIESYFQELPSSNHQLNTLDAQPIVDQAVSNQLAYLI 92

Query:    61 STSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQQ 100
               SG+V + + +   F Q FI++AE  +WK++SD +R+Q+
Sbjct:    93 MASGSVKFADQQLRKFQQTFIVTAENDKWKVVSDCYRMQE 132

GO:0006611 "protein export from nucleus" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0006408 "snRNA export from nucleus" evidence=NAS

GO:0006406 "mRNA export from nucleus" evidence=NAS

GO:0006409 "tRNA export from nucleus" evidence=NAS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

UNIPROTKB|F1ND17 NXT2 "NTF2-related export protein 2" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 37/101 (36%), Positives = 58/101 (57%)

Query:     3 KLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLIST 62
             +LY D+ A L WNG+   G +A+ ++   LP  + ++  +D   + E+A Q+Q   L+ T
Sbjct:    33 RLYLDK-ATLIWNGNAVSGQEALNEFFEMLPSSEFQVNVLDCQPVHEQATQSQTTVLVVT 91

Query:    63 SGTVVYKNMKKTGFNQNFIISAEGAR----WKIISDVFRLQ 99
              GTV +   K+  FNQNF+++A+       WKI SD FR Q
Sbjct:    92 CGTVKFDGNKQRYFNQNFLLTAQATSNSTVWKIASDCFRFQ 132

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|Q5ZLH0 NXT2 "NTF2-related export protein 2" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 37/101 (36%), Positives = 58/101 (57%)

Query:     3 KLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLIST 62
             +LY D+ A L WNG+   G +A+ ++   LP  + ++  +D   + E+A Q+Q   L+ T
Sbjct:    38 RLYLDK-ATLIWNGNAVSGQEALNEFFEMLPSSEFQVNVLDCQPVHEQATQSQTTVLVVT 96

Query:    63 SGTVVYKNMKKTGFNQNFIISAEGAR----WKIISDVFRLQ 99
              GTV +   K+  FNQNF+++A+       WKI SD FR Q
Sbjct:    97 CGTVKFDGNKQRYFNQNFLLTAQATSNSTVWKIASDCFRFQ 137

GO:0015031 "protein transport" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9NPJ8 NXT2 "NTF2-related export protein 2" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 38/101 (37%), Positives = 57/101 (56%)

Query:     3 KLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLIST 62
             +LY D+ A L WNG+   G  A+  +   LP  + ++  +D   + E+A Q+Q   L+ T
Sbjct:    38 RLYLDK-ATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVT 96

Query:    63 SGTVVYKNMKKTGFNQNFIISAEGAR----WKIISDVFRLQ 99
             SGTV +   K+  FNQNF+++A+       WKI SD FR Q
Sbjct:    97 SGTVKFDGNKQHFFNQNFLLTAQSTPNNTVWKIASDCFRFQ 137

GO:0015031 "protein transport" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|A6QNX3 NXT2 "NTF2-related export protein 2" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 38/101 (37%), Positives = 58/101 (57%)

Query:     3 KLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLIST 62
             +LY D+ A L WNG+   G +A+  +   LP  + ++  +D   + E+A Q+Q   L+ T
Sbjct:    38 RLYLDK-ATLIWNGNVVTGLEALANFFDMLPSSEFQVNMLDCQPVHEQATQSQTTVLVVT 96

Query:    63 SGTVVYKNMKKTGFNQNFIISAEGAR----WKIISDVFRLQ 99
             SGTV +   K+  FNQNF+++A+       WKI SD FR Q
Sbjct:    97 SGTVKFDGNKQHYFNQNFLLTAQTTANNTVWKIASDCFRFQ 137

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|K7GMM6 LOC100521422 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 38/101 (37%), Positives = 57/101 (56%)

Query:     3 KLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLIST 62
             +LY D+ A L WNG+   G +A+  +   LP  + ++  +D   + E+A Q Q   L+ T
Sbjct:    10 RLYLDK-ATLIWNGNVVTGLEALTNFFEMLPSSEFQVNMLDCQPVHEQATQAQTTVLVVT 68

Query:    63 SGTVVYKNMKKTGFNQNFIISAEGAR----WKIISDVFRLQ 99
             SGTV +   K+  FNQNF+++A+       WKI SD FR Q
Sbjct:    69 SGTVKFDGNKQHYFNQNFLLTAQSTPNNTVWKIASDCFRFQ 109

GO:0006810 "transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|K7GNP4 LOC100521422 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 38/101 (37%), Positives = 57/101 (56%)

Query:     3 KLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLIST 62
             +LY D+ A L WNG+   G +A+  +   LP  + ++  +D   + E+A Q Q   L+ T
Sbjct:    38 RLYLDK-ATLIWNGNVVTGLEALTNFFEMLPSSEFQVNMLDCQPVHEQATQAQTTVLVVT 96

Query:    63 SGTVVYKNMKKTGFNQNFIISAEGAR----WKIISDVFRLQ 99
             SGTV +   K+  FNQNF+++A+       WKI SD FR Q
Sbjct:    97 SGTVKFDGNKQHYFNQNFLLTAQSTPNNTVWKIASDCFRFQ 137

GO:0006810 "transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1RWU7 LOC100521422 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 39/103 (37%), Positives = 58/103 (56%)

Query:     3 KLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRL--PEEAAQNQIAYLI 60
             +LY D+ A L WNG+   G +A+  +   LP  + ++  +D   +  PE+A Q Q   L+
Sbjct:    38 RLYLDK-ATLIWNGNVVTGLEALTNFFEMLPSSEFQVNMLDCQPVHDPEQATQAQTTVLV 96

Query:    61 STSGTVVYKNMKKTGFNQNFIISAEGAR----WKIISDVFRLQ 99
              TSGTV +   K+  FNQNF+++A+       WKI SD FR Q
Sbjct:    97 VTSGTVKFDGNKQHYFNQNFLLTAQSTPNNTVWKIASDCFRFQ 139

GO:0006810 "transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-050521-1 nxt2 "nuclear transport factor 2-like export factor 2" [Danio rerio (taxid:7955)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 35/103 (33%), Positives = 61/103 (59%)

Query:     3 KLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLIST 62
             +LY D+ A L WNG+   G +A+ ++   LP  + +++++D   + E+A Q Q   L+  
Sbjct:    38 RLYLDK-ATLVWNGNAVTGQEALGEFFESLPSSEFQVQTLDCQPVHEQATQGQTTLLVVA 96

Query:    63 SGTVVYKNMKKTGFNQNFIISAEGAR------WKIISDVFRLQ 99
             +G+V ++  K+  FNQNF+++A+ +       WKI SD FR Q
Sbjct:    97 AGSVKFEGNKQRFFNQNFLLTAQASPNSDQPVWKIASDCFRFQ 139

GO:0006810 "transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007507 "heart development" evidence=IMP

RGD|1560204 Nxt2 "nuclear transport factor 2-like export factor 2" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 37/101 (36%), Positives = 56/101 (55%)

Query:     3 KLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLIST 62
             +LY D+ A L WNG+   G +A+  +   LP  + ++  +D   + E+A Q Q   L+ T
Sbjct:    38 RLYLDK-ATLIWNGNVVTGLEALANFFEMLPSSEFQINMLDCQPVHEQATQYQTTVLVVT 96

Query:    63 SGTVVYKNMKKTGFNQNFIISAEGAR----WKIISDVFRLQ 99
             SG V +   K+  FNQNF+++A+       WKI SD FR Q
Sbjct:    97 SGVVKFDGNKQHFFNQNFLLTAQSTPNSTVWKIASDCFRFQ 137

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NPJ8	NXT2_HUMAN	No assigned EC number	0.3689	0.9245	0.6901	yes	N/A
Q3UNA4	NXT2_MOUSE	No assigned EC number	0.3592	0.9245	0.6901	yes	N/A
Q9V3H8	NXT1_DROME	No assigned EC number	0.43	0.9339	0.7443	yes	N/A
A6QNX3	NXT2_BOVIN	No assigned EC number	0.3689	0.9245	0.6901	yes	N/A
Q5ZLH0	NXT2_CHICK	No assigned EC number	0.3592	0.9245	0.6950	yes	N/A
Q9U757	NXT1_CAEEL	No assigned EC number	0.3058	0.7924	0.6131	yes	N/A
B2GV77	NXT2_RAT	No assigned EC number	0.3663	0.9056	0.6760	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.3.1	LOW CONFIDENCE prediction!
3rd Layer	5.3.3	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	106
cd00780	119	cd00780, NTF2, Nuclear transport factor 2 (NTF2) d	2e-14
pfam02136	116	pfam02136, NTF2, Nuclear transport factor 2 (NTF2)	4e-10

>gnl|CDD|238403 cd00780, NTF2, Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus

 Score = 63.5 bits (155), Expect = 2e-14
 Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 10/102 (9%)

Query: 1   MGKLYKDEDAVLSWNG-HGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIA 57
           + +LY D  ++LS  G     G  AIV+ +S LP     H++ ++D    P         
Sbjct: 24  LHRLYGDT-SMLSREGMKQVTGRDAIVEKLSSLPFQKTKHKITTVDSQPTPSGG------ 76

Query: 58  YLISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQ 99
            ++  +G++         F+Q F+++ +   + +++D+FR  
Sbjct: 77  VIVMVTGSLKLDEQPPRKFSQTFVLAPQNGGYFVLNDIFRFV 118

This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. Length = 119

>gnl|CDD|216894 pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain

 Score = 52.4 bits (126), Expect = 4e-10
 Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 2   GKLYKDEDAVLSWNGHGT-KGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAY 58
             LY D+ +V    G     G +AI ++   LP     H + S+D        A +    
Sbjct: 22  AALYYDDASVEDPPGQSPVTGREAINEFFDSLPFTRIQHLITSVDAQP-----ASHSDGV 76

Query: 59  LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL 98
           L+  +G +   +  +  F+Q F+++ +   + +++D+FR 
Sbjct: 77  LVMVTGELTVDDFPRRRFSQTFLLTPQRGGYFVLNDIFRY 116

This family includes the NTF2-like Delta-5-3-ketosteroid isomerase proteins. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
KOG4353|consensus	139		100.0
KOG2104|consensus	126		99.98
cd00780	119	NTF2 Nuclear transport factor 2 (NTF2) domain play	99.97
PF02136	118	NTF2: Nuclear transport factor 2 (NTF2) domain; In	99.93
KOG0116|consensus	419		99.91
PF10429	166	Mtr2: Nuclear pore RNA shuttling protein Mtr2; Int	99.49
cd00531	124	NTF2_like Nuclear transport factor 2 (NTF2-like) s	98.61
KOG3763|consensus	585		97.98
PF13474	121	SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE	97.45
PF14534	107	DUF4440: Domain of unknown function (DUF4440); PDB	97.17
TIGR02246	128	conserved hypothetical protein. This family consis	97.01
PF15008	262	DUF4518: Domain of unknown function (DUF4518)	94.63
PF08332	128	CaMKII_AD: Calcium/calmodulin dependent protein ki	94.55
PF12893	116	Lumazine_bd_2: Putative lumazine-binding; PDB: 3BL	93.9
PF13577	127	SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RF	93.47
COG4319	137	Ketosteroid isomerase homolog [Function unknown]	93.05
PF12680	102	SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8	91.39

>KOG4353|consensus

Probab=100.00  E-value=4.2e-34  Score=187.08  Aligned_cols=102  Identities=32%  Similarity=0.654  Sum_probs=97.4

Q ss_pred             CCCCCCCCCceEEEcCCccccHHHHHHHHHcCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeEEE
Q psy5646           1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNF   80 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~qtF   80 (106)
                      |++||.+ +|.++|||+++.|++.|.+++..||.++|+|+++||||+++.+++++.++||+|+|.|+++|+++|.|.|||
T Consensus        34 i~rlY~~-~atlvWNGn~v~g~esls~ff~~LPsS~~qi~~lD~Qpv~dqat~~q~~vLvvvsGtVkFdG~k~r~F~qt~  112 (139)
T KOG4353|consen   34 IGRLYLD-NATLVWNGNPVSGTESLSEFFNMLPSSEFQINDLDCQPVHDQATGSQTTVLVVVSGTVKFDGNKQRVFNQTF  112 (139)
T ss_pred             hHHHhhc-cceEEEcCCcchhHHHHHHHHHhCCCccccccccccccchhhcccccceEEEEEeeeEEEcCCcccccccee
Confidence            5789999 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCeEE----EEceeEEeeecCC
Q psy5646          81 IISAEGARWK----IISDVFRLQQTPV  103 (106)
Q Consensus        81 vL~~~~~~y~----I~nD~fR~~~~~~  103 (106)
                      +|.++++.|.    |.+||||++|+.+
T Consensus       113 ll~~e~~~~k~~~~v~Sd~fr~~d~~~  139 (139)
T KOG4353|consen  113 LLTAEDPPFKTVWKVASDCFRFQDWQS  139 (139)
T ss_pred             EEeecCCccchhhhhhhhhhhhhhccC
Confidence            9999987666    9999999999864

>KOG2104|consensus

Probab=99.98  E-value=2.3e-32  Score=176.58  Aligned_cols=95  Identities=25%  Similarity=0.515  Sum_probs=90.3

Q ss_pred             CCCCCCCCCceEEEcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeE
Q psy5646           1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQ   78 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~q   78 (106)
                      |..+|.+ .|.|||+|..++|+++|.+|+.+||  +++|.|+++||||++.      ++|||+|.|.++.|++++.+|+|
T Consensus        28 l~~lY~~-~S~LTfEGqq~qG~~~IveKl~sLpFqkiqh~IttvD~QPt~~------g~ilv~V~G~Lk~dEd~~~~FsQ  100 (126)
T KOG2104|consen   28 LGALYID-TSMLTFEGQQIQGKDAIVEKLTSLPFQKIQHSITTVDSQPTPD------GGILVMVVGQLKLDEDPILRFSQ  100 (126)
T ss_pred             hhhhhcc-cceeeEcchhhcchHHHHHHHhcCChhhhhceeeecccccCCC------CcEEEEEeeeeeeccCCccceee
Confidence            5689999 8999999999999999999999999  9999999999999987      69999999999999999999999


Q ss_pred             EEEEEEeC-CeEEEEceeEEeeecC
Q psy5646          79 NFIISAEG-ARWKIISDVFRLQQTP  102 (106)
Q Consensus        79 tFvL~~~~-~~y~I~nD~fR~~~~~  102 (106)
                      +|+|.|+. ++|||.||+||+-..+
T Consensus       101 vF~L~~n~~~~~~v~ndiFRLn~~n  125 (126)
T KOG2104|consen  101 VFLLKPNIQGSYYVFNDIFRLNLHN  125 (126)
T ss_pred             EEEEeEcCCCCEEEEeeeEEEeccc
Confidence            99999995 9999999999998754

>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus

Probab=99.97  E-value=1.4e-30  Score=170.04  Aligned_cols=93  Identities=25%  Similarity=0.545  Sum_probs=89.4

Q ss_pred             CCCCCCCCCceEEEcC-CccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeee
Q psy5646           1 MGKLYKDEDAVLSWNG-HGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFN   77 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG-~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~   77 (106)
                      |++||++ +|.++|+| +.+.|+++|.++|++||  .++|++.++||||+++      ++++|+|+|.++.++.++|+|+
T Consensus        24 L~~fY~~-~s~~~~~~~~~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~~~------~~ili~V~G~~~~~~~~~~~F~   96 (119)
T cd00780          24 LHRLYGD-TSMLSREGMKQVTGRDAIVEKLSSLPFQKTKHKITTVDSQPTPS------GGVIVMVTGSLKLDEQPPRKFS   96 (119)
T ss_pred             HHhhcCC-CcEEEECCceEecCHHHHHHHHHhCCCcceEEEEEEEeeeEcCC------CCEEEEEEEEEEECCCCceeEe
Confidence            5789999 99999999 99999999999999999  9999999999999997      5899999999999998999999


Q ss_pred             EEEEEEEeCCeEEEEceeEEeee
Q psy5646          78 QNFIISAEGARWKIISDVFRLQQ  100 (106)
Q Consensus        78 qtFvL~~~~~~y~I~nD~fR~~~  100 (106)
                      |+|+|+|.+++|+|.||+|||++
T Consensus        97 q~F~L~~~~~~~~I~nD~fr~~~  119 (119)
T cd00780          97 QTFVLAPQNGGYFVLNDIFRFVD  119 (119)
T ss_pred             EEEEEEecCCeEEEEeeEEEecC
Confidence            99999999999999999999975

This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.

>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein

Probab=99.93  E-value=1.3e-25  Score=145.31  Aligned_cols=93  Identities=29%  Similarity=0.592  Sum_probs=83.4

Q ss_pred             CCCCC-CCCCceEEEcCC-ccccHHHHHHHHHcCCCe--eEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCce-eee
Q psy5646           1 MGKLY-KDEDAVLSWNGH-GTKGSQAIVKYISELPPC--DHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMK-KTG   75 (106)
Q Consensus         1 l~~~Y-~~~~s~l~~nG~-~~~G~~~I~~~l~~lp~~--~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~-~~~   75 (106)
                      |++|| .+ .|.++|+|+ .+.|+++|.++|.+||.+  +|+|+++||||....    .++++|+|+|.++.++.+ .|+
T Consensus        21 L~~~Y~~~-~s~~~~~~~~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~~----~~~i~i~v~G~~~~~~~~~~~~   95 (118)
T PF02136_consen   21 LHKLYHDD-ASFLTWNGNRPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPSS----DGSILITVTGQFKEDDNPNPRR   95 (118)
T ss_dssp             GGGGEEEE-EEEEEETTECEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEEC----CSEEEEEEEEEEEETTSEEEEE
T ss_pred             HHHHHcCC-CeeecCCCchhhhhHHHHHHHHhcCCCcccEEEeccccccccccc----CCcEEEEEEeEEEecCCCcccE
Confidence            57899 66 889999999 999999999999999966  999999999973211    158999999999999885 799


Q ss_pred             eeEEEEEEEeCCeEEEEceeEEe
Q psy5646          76 FNQNFIISAEGARWKIISDVFRL   98 (106)
Q Consensus        76 F~qtFvL~~~~~~y~I~nD~fR~   98 (106)
                      |+|+|+|+|.+++|+|.||+|||
T Consensus        96 F~q~FvL~~~~~~~~I~nd~~r~  118 (118)
T PF02136_consen   96 FSQTFVLVPQNNGYFIANDIFRF  118 (118)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEEEcCCEEEEEeeEEEC
Confidence            99999999999999999999997

NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....

>KOG0116|consensus

Probab=99.91  E-value=6e-25  Score=169.11  Aligned_cols=93  Identities=26%  Similarity=0.487  Sum_probs=87.6

Q ss_pred             CCCCCCCCCceEEEcC---C--ccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCcee
Q psy5646           1 MGKLYKDEDAVLSWNG---H--GTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKK   73 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG---~--~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~   73 (106)
                      ||+||.+ +|.|+.-|   +  .+.|.++|++++++|+  .++.+|.++|+|.+++      ++|+|+|+|.+...+.+.
T Consensus        35 lhrfY~~-~S~ltr~~~dg~m~s~t~~~~I~~~i~sld~~~~s~eI~tvdsQ~S~~------~GvvI~VtG~lt~~~~~r  107 (419)
T KOG0116|consen   35 LHRFYMD-DSVLTRPGLDGKMVSVTGLEAIHEKIMSLDYEVCSVEISTVDSQASLE------KGVVIMVTGYLTNKDGPR  107 (419)
T ss_pred             HHHHhhc-cceeeccCCCCceEEEecHHHhhhheeecCCCceeEEEEEEehhhhcc------CCeEEEEEEEEEeCCCcc
Confidence            6899999 99999854   4  6789999999999999  7899999999999988      599999999999999999


Q ss_pred             eeeeEEEEEEEeCCeEEEEceeEEeee
Q psy5646          74 TGFNQNFIISAEGARWKIISDVFRLQQ  100 (106)
Q Consensus        74 ~~F~qtFvL~~~~~~y~I~nD~fR~~~  100 (106)
                      |+|+|||+|+|++++|||+||+|||+|
T Consensus       108 RkF~QtFfLapq~~~yfVlNDiFRfvd  134 (419)
T KOG0116|consen  108 RKFSQTFFLAPQEKGYFVLNDIFRFVD  134 (419)
T ss_pred             eEEEEEEEEeecCCceEEEechhhhcc
Confidence            999999999999999999999999999

>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts

Probab=99.49  E-value=3.6e-14  Score=96.97  Aligned_cols=77  Identities=17%  Similarity=0.374  Sum_probs=61.7

Q ss_pred             CCCCCCCCCceEEEcCCccccHHHHHHHHHcCC-CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeEE
Q psy5646           1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP-PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQN   79 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp-~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~qt   79 (106)
                      |..||.+ +|.++|||+++.+..+..+.|.++| .++|+++++|||.++++     ++++++|+|.|++|+..+-+-.|.
T Consensus        30 l~~F~~~-~~~II~Ng~Pi~~~~~F~~~w~~~pv~TqH~L~s~D~H~IPGs-----gt~i~N~n~KVRFDEsGrdk~G~~  103 (166)
T PF10429_consen   30 LTQFLPP-NCKIIWNGTPIAQPTAFQQTWQQQPVQTQHQLTSFDCHVIPGS-----GTFIINVNCKVRFDESGRDKLGED  103 (166)
T ss_dssp             HTTCECC-EEEEEETTEEES-HHHHHHHHHCCS--EEEEEEEEEEEEETTT-----TEEEEEEEEEEEEB-SSB-TTS-B
T ss_pred             hHhhcCC-CcEEEECCccCCCHHHHHHHHHhCccceeeeeeeeeeeEeCCC-----CeEEEeeeEEEEecCCCCCCCCCc
Confidence            3568888 9999999999999999999999999 99999999999999986     689999999999997644444444


Q ss_pred             EEEE
Q psy5646          80 FIIS   83 (106)
Q Consensus        80 FvL~   83 (106)
                      ..|.
T Consensus       104 a~l~  107 (166)
T PF10429_consen  104 ADLP  107 (166)
T ss_dssp             --TT
T ss_pred             eeec
Confidence            4443

Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.

>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily

Probab=98.61  E-value=3.7e-06  Score=52.29  Aligned_cols=91  Identities=25%  Similarity=0.359  Sum_probs=73.4

Q ss_pred             CCCCCCCCceEEEcC-----CccccHHHHHHHHHcCC----CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECC--
Q psy5646           2 GKLYKDEDAVLSWNG-----HGTKGSQAIVKYISELP----PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKN--   70 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG-----~~~~G~~~I~~~l~~lp----~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~--   70 (106)
                      ..||.+ ++.+.+.+     ....|+++|.+++..++    ...|.+..++++...+.     ....+.+.+.+...+  
T Consensus        21 ~~~~~~-d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~   94 (124)
T cd00531          21 ALLYAD-DAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDG-----EGVVVSVFGVLRTRGDG   94 (124)
T ss_pred             HhhCcC-cEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCC-----EEEEEEEEEEEEEccCC
Confidence            468999 99999987     57789999999999886    35555689999987652     245667777777665  


Q ss_pred             -ceeeeeeEEEEEEEeCCeEEEEceeEEe
Q psy5646          71 -MKKTGFNQNFIISAEGARWKIISDVFRL   98 (106)
Q Consensus        71 -~~~~~F~qtFvL~~~~~~y~I~nD~fR~   98 (106)
                       ...+.+..+|.+.+.++.|+|.+..+++
T Consensus        95 ~~~~~~~~~~~~~~~~~g~w~i~~~~~~~  123 (124)
T cd00531          95 EQDVFAGGQTFVLRPQGGGGKIANRRFRL  123 (124)
T ss_pred             ceeEEEEEEEEEEEEeCCEEEEEEEEEec
Confidence             3577899999999999999999999886

This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea

>KOG3763|consensus

Probab=97.98  E-value=2.5e-05  Score=62.52  Aligned_cols=79  Identities=18%  Similarity=0.308  Sum_probs=62.1

Q ss_pred             cccHHHHHHHHHcCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEEC-Cc---eeee---eeEEEEEEEeC-CeEE
Q psy5646          19 TKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK-NM---KKTG---FNQNFIISAEG-ARWK   90 (106)
Q Consensus        19 ~~G~~~I~~~l~~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~-~~---~~~~---F~qtFvL~~~~-~~y~   90 (106)
                      ..|..+|...|++||+++|.+.++-...+..+.    .++.+.|.|.++-. ++   ..+.   |++||+++|.+ .+-+
T Consensus       412 ~~g~~~Iv~aLs~LPkT~Hdl~s~vvDv~~~~~----~~l~ftv~G~f~d~~g~~~~s~~~~~~FtRtfvv~P~~ns~l~  487 (585)
T KOG3763|consen  412 KHGACDIVVALSALPKTQHDLDSFVVDVWYQTG----NLLGFTVAGVFRDGEGQNSPSNRALLGFTRTFVVTPRENSGLA  487 (585)
T ss_pred             hccchHHHHHHHhCccchhhhhhhheeeeeccc----ceEEEEEEEEeecCCccCCcccccccccceEEEEeeCCCCceE
Confidence            468899999999999999999986655555431    47899999988843 22   2344   99999999987 7999


Q ss_pred             EEceeEEeeec
Q psy5646          91 IISDVFRLQQT  101 (106)
Q Consensus        91 I~nD~fR~~~~  101 (106)
                      |.||.+-....
T Consensus       488 iv~d~Lfi~~~  498 (585)
T KOG3763|consen  488 IVNDQLFIASA  498 (585)
T ss_pred             EEeceeEEeec
Confidence            99998866553

>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B

Probab=97.45  E-value=0.0032  Score=39.47  Aligned_cols=87  Identities=18%  Similarity=0.301  Sum_probs=61.4

Q ss_pred             CCCCCCCceEEEcC--CccccHHHHHHHHHc----CCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEE--CCc-ee
Q psy5646           3 KLYKDEDAVLSWNG--HGTKGSQAIVKYISE----LPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVY--KNM-KK   73 (106)
Q Consensus         3 ~~Y~~~~s~l~~nG--~~~~G~~~I~~~l~~----lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~--~~~-~~   73 (106)
                      ++|.+ +..+...+  ....|.++|.+++..    .+....++..+.++...       ..+++...+.++.  +++ ..
T Consensus        22 ~~~~~-d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~a~~~~~~~~~~~~~~~~~~   93 (121)
T PF13474_consen   22 SLFSD-DFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVSG-------DVAVVTGEFRLRFRNDGEEIE   93 (121)
T ss_dssp             HHEEE-EEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEET-------TEEEEEEEEEEEEECTTCEEE
T ss_pred             HhhCC-CEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEECC-------CEEEEEEEEEEEEecCCccce
Confidence            46777 77777644  456799999888865    34667777777776532       2566666666654  344 35


Q ss_pred             eeeeEEEEEEEeCCeEEEEceeEE
Q psy5646          74 TGFNQNFIISAEGARWKIISDVFR   97 (106)
Q Consensus        74 ~~F~qtFvL~~~~~~y~I~nD~fR   97 (106)
                      ..+-.|+++...++.|+|.....-
T Consensus        94 ~~~r~t~v~~k~~~~Wki~h~H~S  117 (121)
T PF13474_consen   94 MRGRATFVFRKEDGGWKIVHIHWS  117 (121)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             eeEEEEEEEEEECCEEEEEEEEec
Confidence            678899999999999999877654

>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A

Probab=97.17  E-value=0.012  Score=35.81  Aligned_cols=82  Identities=16%  Similarity=0.230  Sum_probs=57.2

Q ss_pred             CCCCCCCCceEEEcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc---eeeee
Q psy5646           2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM---KKTGF   76 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~---~~~~F   76 (106)
                      .++|.| +..+...+....|++++.+.+.+-+  ....++.....++..+       ..++.....+...+.   ....+
T Consensus        21 ~~~~~~-d~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~gd-------~a~~~~~~~~~~~~~g~~~~~~~   92 (107)
T PF14534_consen   21 ASLYAD-DFVFVGPGGTILGKEAILAAFKSGFARFSSIKFEDVEVRVLGD-------TAVVRGRWTFTWRGDGEPVTIRG   92 (107)
T ss_dssp             HTTEEE-EEEEEETTSEEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEETT-------EEEEEEEEEEEETTTTEEEEEEE
T ss_pred             HhhhCC-CEEEECCCCCEeCHHHHHHHHhhccCCCceEEEEEEEEEEECC-------EEEEEEEEEEEEecCCceEEEEE
Confidence            468888 8888887776779999999998744  4455566677777743       445555555554432   23566


Q ss_pred             eEEEEEEEeCCeEEE
Q psy5646          77 NQNFIISAEGARWKI   91 (106)
Q Consensus        77 ~qtFvL~~~~~~y~I   91 (106)
                      ..+.++...+++|.|
T Consensus        93 ~~~~v~~k~~g~W~i  107 (107)
T PF14534_consen   93 RFTSVWKKQDGKWRI  107 (107)
T ss_dssp             EEEEEEEEETTEEEE
T ss_pred             EEEEEEEEeCCEEEC
Confidence            777788888999987

>TIGR02246 conserved hypothetical protein

Probab=97.01  E-value=0.014  Score=37.03  Aligned_cols=89  Identities=16%  Similarity=0.235  Sum_probs=55.4

Q ss_pred             CCCCCCCCceEE-EcCCccccHHHHHHHHHcC----C-CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEEC-Cce--
Q psy5646           2 GKLYKDEDAVLS-WNGHGTKGSQAIVKYISEL----P-PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK-NMK--   72 (106)
Q Consensus         2 ~~~Y~~~~s~l~-~nG~~~~G~~~I~~~l~~l----p-~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~-~~~--   72 (106)
                      ..+|.+ ++.+. ..|....|+++|.+.+...    + .+++.+...+.+-..+      ....+.....+... +..  
T Consensus        26 ~~~~~~-Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~A~~~~~~~~~~~~~~~~~   98 (128)
T TIGR02246        26 ADLFTP-DGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGP------DLAIVHAIQTITAPGKGRAR   98 (128)
T ss_pred             HHhhCC-CceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCC------CEEEEEEEEEEEcCCCCCCC
Confidence            357888 88876 5777889999999988754    2 3346666555554433      13333333333322 222  


Q ss_pred             -eeeeeEEEEEEEeCCeEEEEceeEE
Q psy5646          73 -KTGFNQNFIISAEGARWKIISDVFR   97 (106)
Q Consensus        73 -~~~F~qtFvL~~~~~~y~I~nD~fR   97 (106)
                       .....-++++...+++|+|..+.+-
T Consensus        99 ~~~~~~~t~~~~~~~g~W~I~~~h~s  124 (128)
T TIGR02246        99 PDAAVRLTFVAVKRDGRWLLAADHNT  124 (128)
T ss_pred             CCcceEEEEEEEeeCCeEEEEeccCC
Confidence             1234457778888899999988653

This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.

>PF15008 DUF4518: Domain of unknown function (DUF4518)

Probab=94.63  E-value=0.19  Score=37.25  Aligned_cols=75  Identities=23%  Similarity=0.257  Sum_probs=58.2

Q ss_pred             ccHHHHHHHHHcCCCeeE---E--EeE--EEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeEEEEEEEeC---CeE
Q psy5646          20 KGSQAIVKYISELPPCDH---E--LKS--MDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAEG---ARW   89 (106)
Q Consensus        20 ~G~~~I~~~l~~lp~~~h---~--i~s--~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~qtFvL~~~~---~~y   89 (106)
                      .|.+++..+|.+|..-..   .  +.+  +.|-..+.      |-++|.|+|++.-++.-.=-|-|.|=|...+   +.|
T Consensus       176 ~Ga~~vs~~Llsl~~e~~l~fnPNl~~~G~k~~~~ph------GlV~V~v~GTvH~~~~ClGiFEq~FGLiRdP~~~N~W  249 (262)
T PF15008_consen  176 EGAEEVSLRLLSLVKEERLFFNPNLDSDGVKGRISPH------GLVLVAVCGTVHRDNTCLGIFEQIFGLIRDPFAENNW  249 (262)
T ss_pred             cCHHHHHHHHHHHhhcccEEECCCCCCCCcceEEcCC------CcEEEEEeeeEecCCceEeehhhhhhcccCccccCce
Confidence            799999999999862211   1  222  45555554      5799999999998877777899999999875   999


Q ss_pred             EEEceeEEeee
Q psy5646          90 KIISDVFRLQQ  100 (106)
Q Consensus        90 ~I~nD~fR~~~  100 (106)
                      +|.+=.+|+..
T Consensus       250 KiK~~~l~i~~  260 (262)
T PF15008_consen  250 KIKFVNLRIRG  260 (262)
T ss_pred             eEEEEEEEEEe
Confidence            99999888865

>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=94.55  E-value=0.75  Score=30.52  Aligned_cols=85  Identities=16%  Similarity=0.236  Sum_probs=58.8

Q ss_pred             CCCCCCC-ceEEE--cCCccccHHHHHHHHHcCC-----CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEEC---Cc
Q psy5646           3 KLYKDED-AVLSW--NGHGTKGSQAIVKYISELP-----PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK---NM   71 (106)
Q Consensus         3 ~~Y~~~~-s~l~~--nG~~~~G~~~I~~~l~~lp-----~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~---~~   71 (106)
                      ++|.+ + +.+.+  -|+.+.|.+.|..+|....     ..+..|..-..|.+..+      ..++.-.-.+++.   |.
T Consensus        26 ~ly~~-d~av~~Pt~s~~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~lg~~------~Ai~~gvy~f~~~d~~G~   98 (128)
T PF08332_consen   26 KLYAP-DVAVFEPTVSNQLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLLGDN------AAIDAGVYTFQFVDKDGV   98 (128)
T ss_dssp             HHEEE-EEEEEEGGGTTSEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEESTT------EEEEEEEEEEEEESTTSS
T ss_pred             hhcCC-CeeEeccccCCceecChHHHHHHHhcccccCCCceeeEecCCeEEEcCCC------EEEEeeEEEEEeecCCCC
Confidence            56777 7 67765  4789999999998887432     44556777777776552      4555555555543   22


Q ss_pred             e-eeeeeEEEEEEEeCCeEEEEce
Q psy5646          72 K-KTGFNQNFIISAEGARWKIISD   94 (106)
Q Consensus        72 ~-~~~F~qtFvL~~~~~~y~I~nD   94 (106)
                      + ...--+||+-...+++|.|.+-
T Consensus        99 ~~~~~areT~v~~~~~g~W~ivhh  122 (128)
T PF08332_consen   99 PRTVQARETRVWQKRDGKWKIVHH  122 (128)
T ss_dssp             EEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             eeeEEEeEEEEEEEeCCeEEEEEE
Confidence            2 2456789999999999999864

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.

>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C

Probab=93.90  E-value=0.99  Score=28.58  Aligned_cols=81  Identities=20%  Similarity=0.277  Sum_probs=52.9

Q ss_pred             CCCCCCCCceEEEc--CC-ccccHHHHHHHHHcC-----C--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc
Q psy5646           2 GKLYKDEDAVLSWN--GH-GTKGSQAIVKYISEL-----P--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM   71 (106)
Q Consensus         2 ~~~Y~~~~s~l~~n--G~-~~~G~~~I~~~l~~l-----p--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~   71 (106)
                      .+.+++ ++.+.+-  |+ .....++..+.+.+-     +  ....+|.++|...  +       ...+.|.-.+.    
T Consensus        26 ~~~f~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g--~-------~A~a~v~~~~~----   91 (116)
T PF12893_consen   26 RSAFHP-DARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDG--D-------VASAKVEYEFP----   91 (116)
T ss_dssp             GGGEEE-EEEEEEEETTEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEET--T-------EEEEEEEEEEE----
T ss_pred             HHhhCC-CcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEEC--C-------EEEEEEEEEEC----
Confidence            345666 7765543  33 334567777777652     1  6777888888773  2       23444443333    


Q ss_pred             eeeeeeEEEEEEEeCCeEEEEceeEE
Q psy5646          72 KKTGFNQNFIISAEGARWKIISDVFR   97 (106)
Q Consensus        72 ~~~~F~qtFvL~~~~~~y~I~nD~fR   97 (106)
                       ...|...|.|...+++|.|.|-+|+
T Consensus        92 -~~~~~d~~~L~K~dg~WkIv~k~~~  116 (116)
T PF12893_consen   92 -GFWFVDYFTLVKTDGGWKIVSKVYH  116 (116)
T ss_dssp             -TEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             -CCceEEEEEEEEECCEEEEEEEecC
Confidence             3479999999999999999998874

>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B

Probab=93.47  E-value=1.1  Score=27.92  Aligned_cols=44  Identities=20%  Similarity=0.414  Sum_probs=34.5

Q ss_pred             CCCCCCCCceEEEcCC---ccccHHHHHHHHHcC----CCeeEEEeEEEEEe
Q psy5646           2 GKLYKDEDAVLSWNGH---GTKGSQAIVKYISEL----PPCDHELKSMDIHR   46 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~---~~~G~~~I~~~l~~l----p~~~h~i~s~D~q~   46 (106)
                      ..+|.+ ++.+.+.+-   .+.|+++|.+.+...    +.+.|.+....+..
T Consensus        29 ~~lft~-d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~   79 (127)
T PF13577_consen   29 ADLFTE-DAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDV   79 (127)
T ss_dssp             HTTEEE-EEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEE
T ss_pred             HhccCC-cEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEE
Confidence            357788 899999874   789999999988775    37788877766664

>COG4319 Ketosteroid isomerase homolog [Function unknown]

Probab=93.05  E-value=0.77  Score=30.93  Aligned_cols=86  Identities=17%  Similarity=0.224  Sum_probs=56.9

Q ss_pred             CCCCCCCCceEEE-cCCccccHHHHHHHHHcCC---CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECC-----ce
Q psy5646           2 GKLYKDEDAVLSW-NGHGTKGSQAIVKYISELP---PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKN-----MK   72 (106)
Q Consensus         2 ~~~Y~~~~s~l~~-nG~~~~G~~~I~~~l~~lp---~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~-----~~   72 (106)
                      .+||.| ++.+.- .|-+..|+++|.+.|...-   ...++.+..+.|...+.       =+..++|.....+     .+
T Consensus        32 ~~~Ytd-Dav~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~G-------D~a~~~~~~~~~~~~~dg~~  103 (137)
T COG4319          32 ADFYTD-DAVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESG-------DVAFVTALLLLTGTKKDGPP  103 (137)
T ss_pred             HHhcCC-ceEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccC-------CEEEEEEeeeeeccCCCCcc
Confidence            468999 876554 5899999999999997753   44555566666644331       1333444444333     32


Q ss_pred             -eeeeeEEEEEEEeC-CeEEEEcee
Q psy5646          73 -KTGFNQNFIISAEG-ARWKIISDV   95 (106)
Q Consensus        73 -~~~F~qtFvL~~~~-~~y~I~nD~   95 (106)
                       ...---|.+++++. ++|+|.-|.
T Consensus       104 ~~~~~Rat~v~rK~~dg~Wk~~~dh  128 (137)
T COG4319         104 ADLAGRATYVFRKEADGGWKLAHDH  128 (137)
T ss_pred             hhheeeeEEEEEEcCCCCEEEEEec
Confidence             24455788888888 599999885

>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A

Probab=91.39  E-value=0.97  Score=26.60  Aligned_cols=31  Identities=29%  Similarity=0.448  Sum_probs=26.6

Q ss_pred             CCCCCCCCceEEEcCCccccHHHHHHHHHcCC
Q psy5646           2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISELP   33 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp   33 (106)
                      ..+|++ +..+...+.+..|+++|.+++..+.
T Consensus        17 ~~~~~~-d~~~~~~~~~~~g~~~~~~~~~~~~   47 (102)
T PF12680_consen   17 AALFAP-DAVFHDPGGTLRGREAIREFFEEFF   47 (102)
T ss_dssp             HHTEEE-EEEEEETTSEEESHHHHHHHHHHHH
T ss_pred             HHHcCC-CEEEEeCCCcccCHHHHHHHHHHHH
Confidence            368888 9888888778999999999998875

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
1jkg_A	140	Structural Basis For The Recognition Of A Nucleopor		8e-13
3nv0_B	154	Crystal Structure And Mutational Analysis Of The Nx		9e-10
1jb2_A	127	Crystal Structure Of Ntf2 M84e Mutant Length = 127		6e-04
1jb4_A	127	Crystal Structure Of Ntf2 M102e Mutant Length = 127		7e-04

>pdb|1JKG|A Chain A, Structural Basis For The Recognition Of A Nucleoporin Fg- Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear Export Factor Length = 140

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           + +LY    A L WNG+   G +++ ++   LP  + ++  +D   + +EA  +Q   L+
Sbjct: 35  LSRLYMGT-ATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLV 93
Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGAR----WKIISDVFRLQ 99
              G+V ++  K+  FNQNFI++A+ +     WKI SD FR Q
Sbjct: 94  VICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQ 136

>pdb|3NV0|B Chain B, Crystal Structure And Mutational Analysis Of The Nxf2NXT1 Heterodimeric Complex From Caenorhabditis Elegans At 1.84 A Resolution Length = 154

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 14  WNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQI-AYLISTSGTVVYKNMK 72
           WNG+   G  +I +++  LP   H+++S+D  RLPE    +     L++ +G V      
Sbjct: 67  WNGNPINGYDSICEFMKALPSTQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDGDS 126
Query: 73  KTGFNQNFIISAEGARWKIISDVFR 97
           K  F Q  ++  E  ++K+ SD FR
Sbjct: 127 KRAFTQTLLLGVEDGKYKVKSDRFR 151

>pdb|1JB2|A Chain A, Crystal Structure Of Ntf2 M84e Mutant Length = 127

Iteration: 1
 Score = 38.9 bits (89), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAY 58
           +G +Y D  + L+W G   +G  AIV+ +S LP     H + + D    P+    +++  
Sbjct: 29  LGAIYIDA-SCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISEVV- 86
Query: 59  LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL 98
                G +        GF+Q F++      W   +D+FRL
Sbjct: 87  -----GQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 121

>pdb|1JB4|A Chain A, Crystal Structure Of Ntf2 M102e Mutant Length = 127

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAY 58
           +G +Y D  + L+W G   +G  AIV+ +S LP     H + + D    P+    + +  
Sbjct: 29  LGAIYIDA-SCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVV- 86
Query: 59  LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL 98
                G +        GF+Q F++      W   +D+FRL
Sbjct: 87  -----GQLKADEDPIMGFHQEFLLKNINDAWVCTNDMFRL 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
1jkg_A	140	P15; NTF2-like domain, transport protein; 1.90A {H	4e-21
3nv0_B	154	NTF2-related export protein; NTF2-like domain, bet	4e-20
1gy6_A	127	Nuclear transport factor 2; 1.6A {Rattus norvegicu	2e-15
1gy7_A	125	Nuclear transport factor 2; protein transport; 1.6	6e-13
3ujm_A	120	Rasputin; NTF2-like fold, RAS signaling, signaling	2e-12
1zo2_A	129	NTF2, nuclear transport factor 2; structural genom	4e-12
3q90_A	140	RAS GTPase-activating protein-binding protein 1; s	3e-08
2qiy_A	154	UBP3-associated protein BRE5; deubiquitylation, ub	2e-06
1jkg_B	250	TAP; NTF2-like domain, transport protein; 1.90A {H	7e-05

>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A Length = 140

 Score = 80.8 bits (199), Expect = 4e-21
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 5/103 (4%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           + +LY    A L WNG+   G +++ ++   LP  + ++  +D   + +EA  +Q   L+
Sbjct: 35  LSRLYMG-TATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLV 93

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGA----RWKIISDVFRLQ 99
              G+V ++  K+  FNQNFI++A+ +     WKI SD FR Q
Sbjct: 94  VICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQ 136

>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans} Length = 154

 Score = 78.5 bits (193), Expect = 4e-20
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQI-AYL 59
           +G LY    +   WNG+   G  +I +++  LP   H+++S+D  RLPE    +     L
Sbjct: 55  IGFLYTQ-VSNAVWNGNPINGYDSICEFMKALPSTQHDIQSLDAQRLPEGVTGDMSGGML 113

Query: 60  ISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQ 99
           ++ +G V      K  F Q  ++  E  ++K+ SD FR  
Sbjct: 114 LNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFRYV 153

>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A Length = 127

 Score = 65.7 bits (160), Expect = 2e-15
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 9/101 (8%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAY 58
           +G +Y D  + L+W G   +G  AIV+ +S LP     H + + D    P+         
Sbjct: 29  LGAIYID-ASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSC------I 81

Query: 59  LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQ 99
           +    G +        GF+Q F++      W   +D+FRL 
Sbjct: 82  ISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLA 122

>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A Length = 125

 Score = 59.1 bits (143), Expect = 6e-13
 Identities = 21/101 (20%), Positives = 49/101 (48%), Gaps = 9/101 (8%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAY 58
           +G LY++ +++L++     +G++ IV+ +  LP     H + ++D               
Sbjct: 27  LGNLYRN-ESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGD-----V 80

Query: 59  LISTSGTVVYKNMKKT-GFNQNFIISAEGARWKIISDVFRL 98
           L+  +G ++    +    F+Q F +  +G  + + +D+FRL
Sbjct: 81  LVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRL 121

>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster} Length = 120

 Score = 57.9 bits (140), Expect = 2e-12
 Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAY 58
           + + Y    + +        G + I   I +L    C  ++  +D               
Sbjct: 25  LHRFYNHNSSYIHGESKLVVGQREIHNRIQQLNFNDCHAKISQVDAQATLGNG------V 78

Query: 59  LISTSGTVVYKNMKKTGFNQNFIISAEGAR-WKIISDVFRLQ 99
           ++  +G +         F Q F+++A+  + + + +D+FR Q
Sbjct: 79  VVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 120

>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2 Length = 129

 Score = 57.3 bits (138), Expect = 4e-12
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAY 58
           +G LY    ++L+W     +G   IV   + L       E+  +D    P          
Sbjct: 33  LGGLYGP-QSMLTWEDTQFQGQANIVNKFNSLNFQRVQFEITRVDCQPSPNNG------S 85

Query: 59  LISTSGTVVYKNMKKTGFNQNFIISAEGA-RWKIISDVFRL 98
           ++  +G V   + +   F+Q F +   G   + I +D+FRL
Sbjct: 86  IVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDLFRL 126

>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} Length = 140

 Score = 47.2 bits (112), Expect = 3e-08
 Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 20/112 (17%)

Query: 1   MGKLYKDEDAVLSWNG--------HGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEE 50
           + + Y   ++     G            G + I + +       C  +++ +D H    +
Sbjct: 31  LHRFYGK-NSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLND 89

Query: 51  AAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAEGAR---WKIISDVFRLQ 99
                   ++   G +   N     F Q F+++ EG+    + + +D+FR Q
Sbjct: 90  G------VVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQ 135

>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A Length = 154

 Score = 42.8 bits (100), Expect = 2e-06
 Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 26/120 (21%)

Query: 1   MGKLYKDEDAVLSWNG---------------HGTKGSQAIVKYISELPP----CDHELKS 41
           +   Y    A L+                      G + I K+ S           +L +
Sbjct: 33  LAYFYAST-AELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKLDT 91

Query: 42  MDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAE--GARWKIISDVFRLQ 99
           +D             + LI  +G + +       F Q FI+     G+ + I +D+ R  
Sbjct: 92  IDFQ----YTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITNDIIRFI 147

>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A Length = 250

 Score = 39.2 bits (91), Expect = 7e-05
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 13/93 (13%)

Query: 21  GSQAIVKYISELPPCDHELKS--MDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTG--- 75
               +V +++ELP   H++ S  +DI       AQ       S +G     + K      
Sbjct: 89  TRLNVVAFLNELPKTQHDVNSFVVDIS------AQTSTLLCFSVNGVFKEVDGKSRDSLR 142

Query: 76  -FNQNFIISAEG-ARWKIISDVFRLQQTPVNMT 106
            F + FI      +   I++D   ++       
Sbjct: 143 AFTRTFIAVPASNSGLCIVNDELFVRNASSEEI 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
1gy7_A	125	Nuclear transport factor 2; protein transport; 1.6	100.0
3nv0_B	154	NTF2-related export protein; NTF2-like domain, bet	100.0
1gy6_A	127	Nuclear transport factor 2; 1.6A {Rattus norvegicu	100.0
1jkg_A	140	P15; NTF2-like domain, transport protein; 1.90A {H	100.0
1zo2_A	129	NTF2, nuclear transport factor 2; structural genom	100.0
3ujm_A	120	Rasputin; NTF2-like fold, RAS signaling, signaling	100.0
3q90_A	140	RAS GTPase-activating protein-binding protein 1; s	100.0
2qiy_A	154	UBP3-associated protein BRE5; deubiquitylation, ub	99.97
1of5_A	221	MRNA export factor MEX67; nuclear protein, repeat,	99.91
1jkg_B	250	TAP; NTF2-like domain, transport protein; 1.90A {H	99.9
1q40_B	219	MEX67, mRNA export factor MEX67; NTF2-fold, nuclea	99.89
1q42_A	201	MTR2, mRNA transport regulator MTR2; NTF2-fold, nu	99.83
3nv0_A	205	Nuclear RNA export factor 2; NTF2-like domain, bet	99.78
1of5_B	184	MTR2, YKL186C, mRNA transport regulator MTR2; nucl	99.66
4i4k_A	143	Uncharacterized protein SGCJ; structural genomics,	97.93
3cu3_A	172	Domain of unknown function with A cystatin-like F;	97.5
3gzr_A	146	Uncharacterized protein with A NTF2-like fold; str	97.47
3hx8_A	129	MLR2180 protein, putative ketosteroid isomerase; s	97.12
3d9r_A	135	Ketosteroid isomerase-like protein; YP_049581.1, s	96.78
3h51_A	156	Putative calcium/calmodulin dependent protein KIN	96.64
3rob_A	139	Uncharacterized conserved protein; structural geno	96.43
3gwr_A	144	Putative calcium/calmodulin-dependent protein KIN	96.38
2gxf_A	142	Hypothetical protein YYBH; alpha-beta protein., st	96.35
2ux0_A	143	Calcium-calmodulin dependent protein kinase (CAM I	96.28
3bb9_A	148	Putative orphan protein; structural genomics, join	96.15
3b7c_A	122	Uncharacterized protein; NTF-2 like protein, struc	95.73
3duk_A	125	NTF2-like protein of unknown function; structural	95.49
2chc_A	170	Protein RV3472; hypothetical protein; 1.69A {Mycob	95.33
2rfr_A	155	Uncharacterized protein; structural genomics, join	95.16
3f7s_A	142	Uncharacterized NTF2-like protein; structural geno	95.1
2rcd_A	129	Uncharacterized protein; structural genomics, join	94.58
3cnx_A	170	Uncharacterized protein; putative dehydratase, NTF	94.26
3mg1_A	323	OCP, orange carotenoid protein; carotenoid binding	93.87
3b8l_A	163	Uncharacterized protein; putative aromatic ring hy	93.55
3er7_A	131	Uncharacterized NTF2-like protein; YP_001812677.1,	93.44
2owp_A	129	Hypothetical protein BXE_B1374; cystatin-like fold	93.32
2r4i_A	123	Uncharacterized protein; NTF2-like protein, struct	93.09
3blz_A	128	NTF2-like protein of unknown function; structural	90.35
3soy_A	145	NTF2-like superfamily protein; structural genomics	89.92
3fka_A	120	Uncharacterized NTF-2 like protein; structural gen	89.28
3a76_A	176	Gamma-hexachlorocyclohexane dehydrochlorinase; bar	88.42
1tp6_A	128	Hypothetical protein PA1314; structural genomics,	85.28
3jum_A	185	Phenazine biosynthesis protein A/B; chirality, dru	84.24
3ke7_A	134	Putative ketosteroid isomerase; structural genomic	83.94
3ef8_A	150	Putative scyalone dehydratase; YP_496742.1, struct	81.74
3f14_A	112	Uncharacterized NTF2-like protein; YP_680363.1, NT	80.16

>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A

Probab=100.00  E-value=5.1e-35  Score=192.53  Aligned_cols=96  Identities=22%  Similarity=0.510  Sum_probs=90.2

Q ss_pred             CCCCCCCCCceEEEcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc-eeeeee
Q psy5646           1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM-KKTGFN   77 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~-~~~~F~   77 (106)
                      |++||++ +|.++|+|+.+.|+++|.++|.+||  +++|+|.++||||+..+     ++|+|+|+|.++.+++ ++|+|+
T Consensus        27 L~~~Y~~-~S~~s~~g~~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~-----~gili~V~G~~~~~~~~~~~~F~  100 (125)
T 1gy7_A           27 LGNLYRN-ESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPY-----GDVLVMITGDLLIDEEQNPQRFS  100 (125)
T ss_dssp             GGGGEEE-EEEEEETTEEEESHHHHHHHHHHSCCSCEEEEEEEEEEEESSTT-----SCEEEEEEEEEEETTCSSCEEEE
T ss_pred             HHHhhCC-CcEEEECCcEecCHHHHHHHHHhCCCcceEEEEEEEEEEEecCC-----CeEEEEEEEEEEECCCCCCccEe
Confidence            6789999 9999999999999999999999999  89999999999999642     5899999999999988 899999


Q ss_pred             EEEEEEEeCCeEEEEceeEEeeecC
Q psy5646          78 QNFIISAEGARWKIISDVFRLQQTP  102 (106)
Q Consensus        78 qtFvL~~~~~~y~I~nD~fR~~~~~  102 (106)
                      |||+|+|++++|+|.||+|||++++
T Consensus       101 qtF~L~p~~~~~~I~nD~fr~~~~~  125 (125)
T 1gy7_A          101 QVFHLIPDGNSYYVFNDIFRLNYSA  125 (125)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECC-
T ss_pred             EEEEEEEeCCEEEEEEEEEEEecCC
Confidence            9999999999999999999999864

>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}

Probab=100.00  E-value=3.8e-35  Score=199.36  Aligned_cols=98  Identities=30%  Similarity=0.608  Sum_probs=90.9

Q ss_pred             CCCCCCCCCceEEEcCCccccHHHHHHHHHcCCCeeEEEeEEEEEeCCcccccC--ceeEEEEEEEEEEECCceeeeeeE
Q psy5646           1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQN--QIAYLISTSGTVVYKNMKKTGFNQ   78 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp~~~h~i~s~D~q~~~~~~~~~--~~~ili~V~G~v~~~~~~~~~F~q   78 (106)
                      |++||.+ +|.++|||+.+.|+++|.++|++||.++|+|.++||||+++ +.++  .++|+|+|+|.++.+++++|+|+|
T Consensus        55 L~~fY~d-~S~ls~~g~~~~G~~~I~~~l~~Lp~~~h~I~s~D~qp~~~-~~~~q~~~~ilI~V~G~l~~~~~~~r~F~Q  132 (154)
T 3nv0_B           55 IGFLYTQ-VSNAVWNGNPINGYDSICEFMKALPSTQHDIQSLDAQRLPE-GVTGDMSGGMLLNVAGAVTVDGDSKRAFTQ  132 (154)
T ss_dssp             GGGGEEE-EEEEEETTEEEESHHHHHHHHHHSCCEEEEEEEEEEEECCT-TCCGGGTTCEEEEEEEEEEETTSCCEEEEE
T ss_pred             HHHHhcC-CcEEEECCeecccHHHHHHHHHhCCCeEEEEEEEEEEEcCc-cccCCCCCeEEEEEEEEEEECCCCceeEEE
Confidence            6789999 99999999999999999999999999999999999999995 2222  158999999999999999999999


Q ss_pred             EEEEEEeCCeEEEEceeEEeee
Q psy5646          79 NFIISAEGARWKIISDVFRLQQ  100 (106)
Q Consensus        79 tFvL~~~~~~y~I~nD~fR~~~  100 (106)
                      ||+|+|++++|||.||+|||+|
T Consensus       133 tFvL~p~~~~y~V~NDifR~vd  154 (154)
T 3nv0_B          133 TLLLGVEDGKYKVKSDRFRYVD  154 (154)
T ss_dssp             EEEEEEETTEEEEEEEEEEECC
T ss_pred             EEEEEEeCCEEEEEeeEEEecC
Confidence            9999999999999999999986

>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A

Probab=100.00  E-value=1.7e-34  Score=190.45  Aligned_cols=95  Identities=27%  Similarity=0.539  Sum_probs=90.5

Q ss_pred             CCCCCCCCCceEEEcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeE
Q psy5646           1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQ   78 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~q   78 (106)
                      |++||++ +|.++|+|+.+.|+++|.++|++||  +++|+|+++||||+++      ++|+|+|+|.++.+++++|+|+|
T Consensus        29 L~~~Y~~-~S~ls~~g~~~~G~~~I~~~l~~Lp~~~~~h~i~t~d~qp~~~------~~ili~V~G~~~~~~~~~~~F~q  101 (127)
T 1gy6_A           29 LGAIYID-ASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPD------SCIISMVVGQLKADEDPIMGFHQ  101 (127)
T ss_dssp             GGGGEEE-EEEEEETTEEEESHHHHHHHHHHCSCSCEEEEEEEEEEEECTT------SCEEEEEEEEEEETTSCCEEEEE
T ss_pred             HHHhhCC-CcEEEECCccccCHHHHHHHHHhCCCcceEEEEEEEEEEEeCC------CcEEEEEEEEEEECCCCcceEeE
Confidence            6789999 9999999999999999999999999  5899999999999965      58999999999999999999999


Q ss_pred             EEEEEEeCCeEEEEceeEEeeecC
Q psy5646          79 NFIISAEGARWKIISDVFRLQQTP  102 (106)
Q Consensus        79 tFvL~~~~~~y~I~nD~fR~~~~~  102 (106)
                      ||+|+|++++|+|.||+|||+++.
T Consensus       102 tF~L~p~~~~~~I~nD~fr~~~~~  125 (127)
T 1gy6_A          102 MFLLKNINDAWVCTNDMFRLALHN  125 (127)
T ss_dssp             EEEEEEETTEEEEEEEEEEECCCC
T ss_pred             EEEEEEeCCEEEEEEEEEEEEccc
Confidence            999999999999999999999974

>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A

Probab=100.00  E-value=2.6e-34  Score=192.32  Aligned_cols=101  Identities=33%  Similarity=0.671  Sum_probs=92.6

Q ss_pred             CCCCCCCCCceEEEcCCccccHHHHHHHHHcCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeEEE
Q psy5646           1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNF   80 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~qtF   80 (106)
                      |++||++ +|.++|||+.+.|+++|.++|.+||.++|+|.++||||+++.++++.++|+|+|+|.++.+++++|.|+|||
T Consensus        35 L~~~Y~~-~S~ls~~g~~~~G~~~I~~~l~~Lp~~~h~i~s~d~q~~~~~~~~~~~~ilI~V~G~~~~~~~~~r~F~qtF  113 (140)
T 1jkg_A           35 LSRLYMG-TATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNF  113 (140)
T ss_dssp             GGGGEEE-EEEEEETTEEEESHHHHHHHHHHSCCEEEEEEEEEEEECCTTTSTTCCEEEEEEEEEEEETTSCCEEEEEEE
T ss_pred             HHHhcCC-CcEEEECCeeecCHHHHHHHHHhCCCceeEEEEEEEEEcCCcccCCCCeEEEEEEEEEEECCCCceeeeEEE
Confidence            5789999 999999999999999999999999999999999999999864333347999999999999999999999999


Q ss_pred             EEEEeC----CeEEEEceeEEeeecC
Q psy5646          81 IISAEG----ARWKIISDVFRLQQTP  102 (106)
Q Consensus        81 vL~~~~----~~y~I~nD~fR~~~~~  102 (106)
                      +|+|++    ++|+|.||+|||++++
T Consensus       114 ~L~p~~~p~~~~~~I~nD~frl~~~~  139 (140)
T 1jkg_A          114 ILTAQASPSNTVWKIASDCFRFQDWA  139 (140)
T ss_dssp             EEEEECCSSSCEEEEEEEEEEETTTT
T ss_pred             EEEecCCCCCCeEEEEeeEEEeecCC
Confidence            999974    8999999999999973

>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2

Probab=100.00  E-value=2.4e-34  Score=190.26  Aligned_cols=94  Identities=24%  Similarity=0.454  Sum_probs=87.9

Q ss_pred             CCCCCCCCCceEEEcCCccccHHHHHHHHHcCCC--eeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeE
Q psy5646           1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQ   78 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp~--~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~q   78 (106)
                      |++||++ +|.++|||+.+.|+++|.++|++||.  ++|+|.++||||+++      ++|+|+|+|.++.+++++|+|+|
T Consensus        33 L~~~Y~~-~S~ls~~g~~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~------~gilI~V~G~~~~~~~~~~~F~q  105 (129)
T 1zo2_A           33 LGGLYGP-QSMLTWEDTQFQGQANIVNKFNSLNFQRVQFEITRVDCQPSPN------NGSIVFVTGDVRIDDGQPLKFSQ  105 (129)
T ss_dssp             GGGGEEE-EEEEEETTEEEESHHHHHHHHHHHCCSCEEEEEEEEEEEECTB------SSEEEEEEEEEEETTCCCEEEEE
T ss_pred             HHHhhCC-CcEEEECCceeccHHHHHHHHHhCCCcceEEEEEEEEEEEeCC------CcEEEEEEEEEEECCCCcceEEE
Confidence            6789999 99999999999999999999999994  889999999999976      58999999999999999999999


Q ss_pred             EEEEEEeC-CeEEEEceeEEeeec
Q psy5646          79 NFIISAEG-ARWKIISDVFRLQQT  101 (106)
Q Consensus        79 tFvL~~~~-~~y~I~nD~fR~~~~  101 (106)
                      ||+|+|++ ++|+|.||+|||+++
T Consensus       106 tF~L~p~~~~~y~I~nD~fR~~~~  129 (129)
T 1zo2_A          106 VFNLMPSGNGGFMIFNDLFRLNLG  129 (129)
T ss_dssp             EEEEEECSSSCEEEEEEEEEEC--
T ss_pred             EEEEEEcCCCcEEEEeEEEEEecC
Confidence            99999998 899999999999873

>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}

Probab=100.00  E-value=1.9e-33  Score=183.89  Aligned_cols=92  Identities=17%  Similarity=0.395  Sum_probs=86.0

Q ss_pred             CCCCCCCCCceEEE-cCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeee
Q psy5646           1 MGKLYKDEDAVLSW-NGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFN   77 (106)
Q Consensus         1 l~~~Y~~~~s~l~~-nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~   77 (106)
                      |++||++ +|.++| +|+.+.|+++|.++|++||  +++|+|.++||||+++      ++|+|+|+|.++.+++++|+|+
T Consensus        25 L~~~Y~~-~s~~~~~~~~~~~G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~~~------~gili~V~G~l~~~~~~~r~F~   97 (120)
T 3ujm_A           25 LHRFYNH-NSSYIHGESKLVVGQREIHNRIQQLNFNDCHAKISQVDAQATLG------NGVVVQVTGELSNDGQPMRRFT   97 (120)
T ss_dssp             GGGGEEE-EEEEEETTCCCEESHHHHHHHHHHHCCCSCEEEEEEEEEEEEGG------GEEEEEEEEEEESTTCCCEEEE
T ss_pred             Hhhhecc-cceEEEcCCcEecCHHHHHHHHHcCCCcceEEEEecccceEcCC------CCEEEEEEEEEEeCCCCCceEE
Confidence            6899999 987766 5899999999999999999  8899999999999987      5899999999999999999999


Q ss_pred             EEEEEEEeC-CeEEEEceeEEee
Q psy5646          78 QNFIISAEG-ARWKIISDVFRLQ   99 (106)
Q Consensus        78 qtFvL~~~~-~~y~I~nD~fR~~   99 (106)
                      |+|+|+|++ ++|+|.||+|||+
T Consensus        98 QtF~L~p~~~~~y~V~nDifR~q  120 (120)
T 3ujm_A           98 QTFVLAAQSPKKYYVHNDIFRYQ  120 (120)
T ss_dssp             EEEEEEECSTTCEEEEEEEEEEC
T ss_pred             EEEEEEEcCCCCEEEEEEEEecC
Confidence            999999986 8999999999995

>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0

Probab=100.00  E-value=1.6e-33  Score=188.63  Aligned_cols=94  Identities=20%  Similarity=0.441  Sum_probs=85.0

Q ss_pred             CCCCCCCCCceEEE-----cCC---ccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECC
Q psy5646           1 MGKLYKDEDAVLSW-----NGH---GTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKN   70 (106)
Q Consensus         1 l~~~Y~~~~s~l~~-----nG~---~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~   70 (106)
                      |++||++ +|.++|     ||+   .+.|+++|.++|++||  .++|+|.++||||+++      ++|+|+|+|.++.++
T Consensus        31 L~~~Y~~-~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~tvD~Qps~~------~gilI~V~G~l~~~~  103 (140)
T 3q90_A           31 LHRFYGK-NSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLN------DGVVVQVMGLLSNNN  103 (140)
T ss_dssp             GGGGEEE-EEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEEEEEEECGG------GCEEEEEEEEEECTT
T ss_pred             HHhhccc-CceEEEEccCCCCceeecccCHHHHHHHHHhCCCccceEEEEeEEEEEeCC------CCEEEEEEEEEecCC
Confidence            6899999 999999     675   6899999999999999  4899999999999987      589999999999999


Q ss_pred             ceeeeeeEEEEEEEeC---CeEEEEceeEEeeec
Q psy5646          71 MKKTGFNQNFIISAEG---ARWKIISDVFRLQQT  101 (106)
Q Consensus        71 ~~~~~F~qtFvL~~~~---~~y~I~nD~fR~~~~  101 (106)
                      +++|+|+|||+|+|++   ++|+|.||+|||+|+
T Consensus       104 ~~~~~F~QtF~L~p~~~~~~~y~V~nDifR~~de  137 (140)
T 3q90_A          104 QALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDE  137 (140)
T ss_dssp             CCCEEEEEEEEEEECSSSTTCEEEEEEEEEEGGG
T ss_pred             CCccEEEEEEEEeecCCCCCCEEEEEEEeEeehh
Confidence            9999999999999986   899999999999985

>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A

Probab=99.97  E-value=1.5e-31  Score=181.29  Aligned_cols=97  Identities=20%  Similarity=0.337  Sum_probs=89.2

Q ss_pred             CCCCCCCCCceEEEc---------------CCccccHHHHHHHHHcC--C--CeeEEEeEEEEEeCCcccccCceeEEEE
Q psy5646           1 MGKLYKDEDAVLSWN---------------GHGTKGSQAIVKYISEL--P--PCDHELKSMDIHRLPEEAAQNQIAYLIS   61 (106)
Q Consensus         1 l~~~Y~~~~s~l~~n---------------G~~~~G~~~I~~~l~~l--p--~~~h~i~s~D~q~~~~~~~~~~~~ili~   61 (106)
                      |++||++ +|.++|+               |+.+.|+++|.++|.+|  |  +++|+|.++||||++++    +++|+|+
T Consensus        33 L~~~Y~~-~S~~s~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~h~I~s~D~q~~~~~----~~~ilI~  107 (154)
T 2qiy_A           33 LAYFYAS-TAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKLDTIDFQYTGHL----HKSILIM  107 (154)
T ss_dssp             GGGGEEE-EEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEEEEEEEEEEEESGG----GCEEEEE
T ss_pred             HHHhhCC-CcEEEEccccccccccccccccceEeeCHHHHHHHHHhccCCCCceEEEEEEEEEEEccCC----CCEEEEE
Confidence            6789999 9999999               88999999999999999  9  99999999999999752    2589999


Q ss_pred             EEEEEEECCceeeeeeEEEEEEEeC--CeEEEEceeEEeeecC
Q psy5646          62 TSGTVVYKNMKKTGFNQNFIISAEG--ARWKIISDVFRLQQTP  102 (106)
Q Consensus        62 V~G~v~~~~~~~~~F~qtFvL~~~~--~~y~I~nD~fR~~~~~  102 (106)
                      |+|.++.+++++|+|+|||+|+|++  ++|+|.||+|||++..
T Consensus       108 V~G~~~~~~~~~r~F~qtFvL~p~~~~~~y~I~ND~fr~~~~~  150 (154)
T 2qiy_A          108 ATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITNDIIRFISNS  150 (154)
T ss_dssp             EEEEEEETTCCCEEEEEEEEEEECC---CEEEEEEEEEEECC-
T ss_pred             EEEEEEECCCCCceEEEEEEEEEeCCCCcEEEEEEEEEEEcce
Confidence            9999999999999999999999987  5999999999999864

>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2

Probab=99.91  E-value=8e-24  Score=150.70  Aligned_cols=97  Identities=21%  Similarity=0.312  Sum_probs=84.9

Q ss_pred             CCCCCCCCCceEEEcCC---------------------------------------ccccHHHHHHHHHcCCCeeEEE--
Q psy5646           1 MGKLYKDEDAVLSWNGH---------------------------------------GTKGSQAIVKYISELPPCDHEL--   39 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~---------------------------------------~~~G~~~I~~~l~~lp~~~h~i--   39 (106)
                      |..||++ +|.++|++.                                       ...|+++|.++|.+||+++|++  
T Consensus        32 L~~lY~~-~S~fS~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~l~~G~~~I~~~l~~LPkT~H~l~~  110 (221)
T 1of5_A           32 LLNLYSP-QSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRLSIGQESINSIFKTLPKTKHHLQE  110 (221)
T ss_dssp             GGGGEEE-EEEEEEEECCC--------------------------------------CBHHHHHHHHHHHSCCEEECTTT
T ss_pred             HHHhhCc-CcEEEEEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhhhccCHHHHHHHHHhCCCeeEeccc
Confidence            5689999 999999873                                       5679999999999999999999  


Q ss_pred             ----eEEEEEeCCcccccCceeEEEEEEEEEEECCc--------------------------------eeeeeeEEEEEE
Q psy5646          40 ----KSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM--------------------------------KKTGFNQNFIIS   83 (106)
Q Consensus        40 ----~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~--------------------------------~~~~F~qtFvL~   83 (106)
                          .++||||.+..     ++|+|+|+|.++.++.                                .+|.|+|||+|+
T Consensus       111 ~~~s~~vD~~~~~~~-----~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rsF~RTFvL~  185 (221)
T 1of5_A          111 QPNEYSMETISYPQI-----NGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGYNSTSNNKLSKKSFDRTWVIV  185 (221)
T ss_dssp             SGGGCEEEEEEEGGG-----TEEEEEEEEEEEEC-----------------------------CCSCCEEEEEEEEEEEE
T ss_pred             CCCceEEEeEEcCCC-----CeEEEEEEEEEEECCCcccccccccccccccccccccccccccccccCCccceEEEEEEE
Confidence                59999999763     4899999999997654                                589999999999


Q ss_pred             EeCCeEEEEceeEEeeecCC
Q psy5646          84 AEGARWKIISDVFRLQQTPV  103 (106)
Q Consensus        84 ~~~~~y~I~nD~fR~~~~~~  103 (106)
                      |.+++|+|.||+||+..+..
T Consensus       186 P~~~~~~I~nD~l~ir~~s~  205 (221)
T 1of5_A          186 PMNNSVIIASDLLTVRAYST  205 (221)
T ss_dssp             EETTEEEEEEEEEEEEECCC
T ss_pred             ecCCeEEEEeeEEEeecCCC
Confidence            99899999999999998764

>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A

Probab=99.90  E-value=1.9e-23  Score=151.16  Aligned_cols=95  Identities=19%  Similarity=0.281  Sum_probs=85.1

Q ss_pred             CCCCCCCCCceEEEcCC---------------------------------ccccHHHHHHHHHcCCCeeEEEe--EEEEE
Q psy5646           1 MGKLYKDEDAVLSWNGH---------------------------------GTKGSQAIVKYISELPPCDHELK--SMDIH   45 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~---------------------------------~~~G~~~I~~~l~~lp~~~h~i~--s~D~q   45 (106)
                      |.++|++ +|.++|+++                                 .+.|+++|.++|.+||+++|.+.  .+|||
T Consensus        37 L~~lY~~-~s~fS~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~~~I~~~l~~LP~t~H~~~s~~vD~~  115 (250)
T 1jkg_B           37 LLDAYHD-GACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDIS  115 (250)
T ss_dssp             GGGTEEE-EEEEEEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHHHHHHHHTTSCCEEECGGGCEEEEE
T ss_pred             HHHhhCc-CcEEEEEeCCCCCCccccchhhhhhhccchhcccchhhhhhhhccCHHHHHHHHHhCCCeeEeccceEEeee
Confidence            5689999 999999843                                 57899999999999999999999  78999


Q ss_pred             eCCcccccCceeEEEEEEEEEEECC----ceeeeeeEEEEEEEe-CCeEEEEceeEEeeecC
Q psy5646          46 RLPEEAAQNQIAYLISTSGTVVYKN----MKKTGFNQNFIISAE-GARWKIISDVFRLQQTP  102 (106)
Q Consensus        46 ~~~~~~~~~~~~ili~V~G~v~~~~----~~~~~F~qtFvL~~~-~~~y~I~nD~fR~~~~~  102 (106)
                      +..+      ++++|+|+|.++.++    .++|.|+|||+|+|. +++|+|.||+||+..+.
T Consensus       116 ~~~~------~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~l~l~~~s  171 (250)
T 1jkg_B          116 AQTS------TLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNAS  171 (250)
T ss_dssp             EECS------SCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEEECC
T ss_pred             ecCC------CEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeEEEEECCC
Confidence            9765      489999999999876    579999999999996 47899999999999865

>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2

Probab=99.89  E-value=3.3e-23  Score=147.36  Aligned_cols=98  Identities=19%  Similarity=0.354  Sum_probs=83.8

Q ss_pred             CCCCCCCCCceEEEcCC------------------------------------------ccccHHHHHHHHHcCCCeeEE
Q psy5646           1 MGKLYKDEDAVLSWNGH------------------------------------------GTKGSQAIVKYISELPPCDHE   38 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~------------------------------------------~~~G~~~I~~~l~~lp~~~h~   38 (106)
                      |..||++ +|.++|.+.                                          ...|+++|.++|.+||+++|+
T Consensus        35 L~~lY~~-~S~fS~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~l~~G~~~I~~~l~~LPkT~H~  113 (219)
T 1q40_B           35 LMILYQN-ESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARMAKLSIGQEQIYKSFQQLPKTRHD  113 (219)
T ss_dssp             GGGGCCT-TCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHHHTCEEHHHHHHHHHHTSCEEECC
T ss_pred             HHHhhcc-ccEEEEEecCCCCccccccccccccccchhhhhhhccchhcccchhhhhhhhccCHHHHHHHHHHCCCeeEe
Confidence            5689999 999999863                                          467999999999999999999


Q ss_pred             E------eEEEEEeCCcccccCceeEEEEEEEEEEECCc-------------------------------eeeeeeEEEE
Q psy5646          39 L------KSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM-------------------------------KKTGFNQNFI   81 (106)
Q Consensus        39 i------~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~-------------------------------~~~~F~qtFv   81 (106)
                      +      -++|||+.+..     ++|+|+|+|.++.++.                               .+|.|+|||+
T Consensus       114 l~~~~~s~~vD~~~~p~~-----~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rsF~RtFv  188 (219)
T 1q40_B          114 IIATPELFSMEVYKFPTL-----NGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYHSGPKHKRIPLSKKSFDRTFV  188 (219)
T ss_dssp             TTTCGGGCEEEEEECSST-----TCEEEEEEEEEEEEECCSSCCCC----------CCSSSSSCCCCCCCCCEEEEEEEE
T ss_pred             cccCCCceEEEeEecCCC-----CeEEEEEEEEEEECCCccccccccccccccccccccccccccccccCCccceEEEEE
Confidence            9      59999988642     4899999999996542                               5899999999


Q ss_pred             EEEe-CCeEEEEceeEEeeecCCC
Q psy5646          82 ISAE-GARWKIISDVFRLQQTPVN  104 (106)
Q Consensus        82 L~~~-~~~y~I~nD~fR~~~~~~~  104 (106)
                      |+|. +++|+|+||+||+..+...
T Consensus       189 L~P~~~~~~~I~nD~l~ir~~~~~  212 (219)
T 1q40_B          189 VIPGPNGSMIVASDTLLIRPYTSD  212 (219)
T ss_dssp             EECC---CCEEEEEEEEEEECCSC
T ss_pred             EEECCCCcEEEEeeEEEEecCCCc
Confidence            9998 5899999999999987653

>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A

Probab=99.83  E-value=5.8e-21  Score=132.20  Aligned_cols=77  Identities=18%  Similarity=0.236  Sum_probs=68.6

Q ss_pred             CCC----CCCCceEEEcCCcc------ccHHHHHHHHHcCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCce
Q psy5646           3 KLY----KDEDAVLSWNGHGT------KGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMK   72 (106)
Q Consensus         3 ~~Y----~~~~s~l~~nG~~~------~G~~~I~~~l~~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~   72 (106)
                      ++|    .+ +|.++|||+++      .|+++|.++|.+||.++|.++++||||+++.     ++++|+++|+|++|+++
T Consensus        60 ~ly~~~l~~-~a~liwNGnp~~~~~~~~gr~~fqk~w~~lP~SqHqL~SlDahpIpGq-----~T~lI~asGkVrFDesg  133 (201)
T 1q42_A           60 TQLGSNLKR-SSAIIVNGQPIIPSPQEDCKLQFQKKWLQTPLSSHQLTSYDGHLIPGT-----GTFVVHFSAKVRFDQSG  133 (201)
T ss_dssp             TTTTTTEEE-EEEEEETTEECCCCSSCCHHHHHHHHHHTSCCEEEEEEEEEEEEETTT-----TEEEEEEEEEEEEBCSS
T ss_pred             HHhccccCC-ccEEEEcCcccccccccccHHHHHHHHHhCCCcceeeeeeecceeCCC-----cEEEEEEeEEEEECCCC
Confidence            677    77 99999999999      9999999999999999999999999999964     68999999999999999


Q ss_pred             eeeeeEEEEEEEe
Q psy5646          73 KTGFNQNFIISAE   85 (106)
Q Consensus        73 ~~~F~qtFvL~~~   85 (106)
                      +++|.|+|+|.++
T Consensus       134 r~~fgQsf~Lta~  146 (201)
T 1q42_A          134 RNRLGESADLFQE  146 (201)
T ss_dssp             CCTTSCCC-----
T ss_pred             cCcCCCcEEEecc
Confidence            9999999999976

>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}

Probab=99.78  E-value=6.6e-19  Score=124.15  Aligned_cols=77  Identities=21%  Similarity=0.349  Sum_probs=69.3

Q ss_pred             ccHHHHHHHHHcCCCeeEEEeE--EEEEeCCcccccCceeEEEEEEEEEEEC---------CceeeeeeEEEEEEEeC-C
Q psy5646          20 KGSQAIVKYISELPPCDHELKS--MDIHRLPEEAAQNQIAYLISTSGTVVYK---------NMKKTGFNQNFIISAEG-A   87 (106)
Q Consensus        20 ~G~~~I~~~l~~lp~~~h~i~s--~D~q~~~~~~~~~~~~ili~V~G~v~~~---------~~~~~~F~qtFvL~~~~-~   87 (106)
                      +|+++|.++|.+||+++|++.+  +||||.++      ++++|+|+|.++.+         +.++|.|+|||+|+|.+ +
T Consensus        98 ~G~~~I~~~L~~LP~T~H~~~s~~vD~~p~~~------~~l~i~V~G~f~e~~~~~~~~~~~~~~r~FsRtFiL~P~~~g  171 (205)
T 3nv0_A           98 HGAMDIVVALSRLPATIHLMDTFVVDVFLVSA------TLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPRGEG  171 (205)
T ss_dssp             EHHHHHHHHHHHSCCEEECGGGCEEEEEEECS------SCEEEEEEEEEEETHHHHSCCSCSTTCEEEEEEEEEEECSTT
T ss_pred             hCHHHHHHHHHhCCCeEEecCceEEEEEEeCC------CeEEEEEEEEEEEcccccccccCCCCCceeEEEEEEEECCCC
Confidence            6999999999999999999996  79999986      47999999999986         34689999999999986 8


Q ss_pred             eEEEEceeEEeeecC
Q psy5646          88 RWKIISDVFRLQQTP  102 (106)
Q Consensus        88 ~y~I~nD~fR~~~~~  102 (106)
                      +|+|.||++-+..+.
T Consensus       172 ~~~I~ND~L~Ir~~s  186 (205)
T 3nv0_A          172 KVAIVSDQLFISSMS  186 (205)
T ss_dssp             CEEEEEEEEEEECCC
T ss_pred             cEEEEecEEEeeCCC
Confidence            999999999887654

>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2

Probab=99.66  E-value=2e-16  Score=108.39  Aligned_cols=78  Identities=10%  Similarity=0.229  Sum_probs=55.9

Q ss_pred             CCCCCCCCceEEEcCCccccHHHHHHHHH-cCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeEEE
Q psy5646           2 GKLYKDEDAVLSWNGHGTKGSQAIVKYIS-ELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNF   80 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~-~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~qtF   80 (106)
                      ..|+.+ .+.|++||+++.++.+.++.|. ++|.++|+++++|||.++.+     ++|+|+|+|+|++++..+-+|.|+|
T Consensus        43 ssF~p~-~~~Ii~NG~p~a~p~~fqeiw~~Q~p~T~hel~S~D~HVIngs-----gsivv~VsgkVRFdEsgrd~fgEtf  116 (184)
T 1of5_B           43 QLFNPN-NCRIIFNATPFAQATVFLQMWQNQVVQTQHALTGVDYHAIPGS-----GTLICNVNCKVRFDESGRDKMGQDA  116 (184)
T ss_dssp             TTBCSS--CCEEETTEEESCHHHHHHHHHHHSCCCEEEEEEEEEEEETTT-----TEEEEEEEEEEECC-----------
T ss_pred             hhcCCC-CceEEECCeEcCCHHHHHHHHHhcCCCceEEEEeEEEEEECCC-----CeEEEEEEEEEEECCCCCCCCCCeE
Confidence            456655 7899999999999999999998 99999999999999999974     6999999999999877656999999


Q ss_pred             EEEEe
Q psy5646          81 IISAE   85 (106)
Q Consensus        81 vL~~~   85 (106)
                      +|.|+
T Consensus       117 vLvpn  121 (184)
T 1of5_B          117 TVPIQ  121 (184)
T ss_dssp             -----
T ss_pred             EECCC
Confidence            99987

>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}

Probab=97.93  E-value=7.7e-05  Score=48.51  Aligned_cols=88  Identities=13%  Similarity=0.206  Sum_probs=62.6

Q ss_pred             CCCCCCCCceEEEcCCccccHHHHHHHHHcC-----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCce----
Q psy5646           2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISEL-----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMK----   72 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~l-----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~----   72 (106)
                      ..+|.+ ++.+...|....|+++|.+.+...     +...+.+...+.....+      ...++...|.+..++.+    
T Consensus        41 ~~lf~~-Da~~~~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------d~A~v~~~~~~~~~g~~~~~~  113 (143)
T 4i4k_A           41 ADVFAE-DGTMILPGLFRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARLLGD------GIALLITEGGILAPGETEASG  113 (143)
T ss_dssp             HTTEEE-EEEEEETTEEEESHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEET------TEEEEEEEEEEECTTCSSCCG
T ss_pred             HHHhhc-CceEEeCCCeecCHHHHHHHHHHHHhhcCCCCeEEeeeEEEEEcCC------CEEEEEeccceecCCCCCCCc
Confidence            468888 888888898899999999988653     34556665556554433      13444455656655542    


Q ss_pred             eeeeeEEEEEEEeCCeEEEEceeE
Q psy5646          73 KTGFNQNFIISAEGARWKIISDVF   96 (106)
Q Consensus        73 ~~~F~qtFvL~~~~~~y~I~nD~f   96 (106)
                      .+.+..|+++...+++|+|....-
T Consensus       114 ~~~~~~T~v~~r~~g~WrI~~~h~  137 (143)
T 4i4k_A          114 DGAVRASWLAVEQDGQWRLAAYQN  137 (143)
T ss_dssp             GGEEEEEEEEEEETTEEEEEEEEE
T ss_pred             ccceEEEEEEEEECCcEEEEEecC
Confidence            366788999999999999988653

>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28

Probab=97.50  E-value=0.00048  Score=45.62  Aligned_cols=91  Identities=11%  Similarity=0.092  Sum_probs=60.7

Q ss_pred             CCCCCCCCceEEE-cCCccccHHHHHHHHHcC-----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc----
Q psy5646           2 GKLYKDEDAVLSW-NGHGTKGSQAIVKYISEL-----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM----   71 (106)
Q Consensus         2 ~~~Y~~~~s~l~~-nG~~~~G~~~I~~~l~~l-----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~----   71 (106)
                      ..+|.+ ++.+.. .|..+.|+++|.+.+...     +..++.+...+.....+      ...++...+.+...+.    
T Consensus        38 ~~lfa~-Da~~~~~~g~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------d~A~v~~~~~~~~~g~~~~~  110 (172)
T 3cu3_A           38 AAPFSE-TADFITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNS------QLALMLVVIRVILPGQTETS  110 (172)
T ss_dssp             HTTEEE-EEEEECTTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEET------TEEEEEEEEEEECTTCSSBC
T ss_pred             HhhcCC-CeEEEeCCCCeEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEeCC------CEEEEEEEEEEEeCCCCCcC
Confidence            467888 888774 788999999999988664     23445444444443322      1344455555766654    


Q ss_pred             eeeeeeEEEEEEEeCCeEEEEceeEEee
Q psy5646          72 KKTGFNQNFIISAEGARWKIISDVFRLQ   99 (106)
Q Consensus        72 ~~~~F~qtFvL~~~~~~y~I~nD~fR~~   99 (106)
                      +......++++...+++|+|.......+
T Consensus       111 ~~~~~~~t~v~~r~dG~WrI~~~~~s~~  138 (172)
T 3cu3_A          111 ASRDSLPLYVVTKGDEGWQIEGLLNTRK  138 (172)
T ss_dssp             GGGCBCCEEEEEEETTEEEEEEEECCBC
T ss_pred             CccceEEEEEEEEeCCeEEEEEEEcCcc
Confidence            2355667888888899999998766543

>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}

Probab=97.47  E-value=0.00098  Score=43.51  Aligned_cols=94  Identities=12%  Similarity=0.168  Sum_probs=61.3

Q ss_pred             CCCCCCCCCceEE-EcCCccccHHHHHHHHHcC----C-CeeEEEeEEEEEeCCcccccCceeEEEEEEEEE----EECC
Q psy5646           1 MGKLYKDEDAVLS-WNGHGTKGSQAIVKYISEL----P-PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTV----VYKN   70 (106)
Q Consensus         1 l~~~Y~~~~s~l~-~nG~~~~G~~~I~~~l~~l----p-~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v----~~~~   70 (106)
                      |..+|.+ ++.++ ..|....|+++|.+.+...    . .+.+.+...+...+.+.      ..++.+...+    .-+|
T Consensus        27 ~~~lf~~-Da~~~~~~G~~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D------~A~v~~~~~l~g~~~~~G   99 (146)
T 3gzr_A           27 FAEIFWP-DGSWVNVVGMHWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIAPG------SALAVVTLIQDAYVTPDG   99 (146)
T ss_dssp             SGGGEEE-EEEEECTTCCEEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEEEETT------EEEEEEEEEECCEECTTC
T ss_pred             HHhhccC-CeEEEcCCCCeeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEEcCCC------EEEEEEEEEecceeCCCC
Confidence            4568888 88876 6788899999999887543    2 34555544454444331      3333333222    1234


Q ss_pred             cee--eeeeEEEEEEEeCCeEEEEceeEEeeec
Q psy5646          71 MKK--TGFNQNFIISAEGARWKIISDVFRLQQT  101 (106)
Q Consensus        71 ~~~--~~F~qtFvL~~~~~~y~I~nD~fR~~~~  101 (106)
                      .+.  .....|++++..+++|.|....-..++.
T Consensus       100 ~~~~~~~~~~t~v~vr~dg~WrI~a~h~s~v~p  132 (146)
T 3gzr_A          100 RQMPRAHDRLTLLAVEREGVWRFIHGHNTIVNP  132 (146)
T ss_dssp             CEECCEEEEEEEEEEEETTEEEEEEEEEEECCT
T ss_pred             CcCCccCcEEEEEEEEECCEEEEEEEecccCcC
Confidence            432  4678899999999999999998877653

>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}

Probab=97.12  E-value=0.0076  Score=36.98  Aligned_cols=88  Identities=17%  Similarity=0.150  Sum_probs=54.8

Q ss_pred             CCCCCCCCceEEEcC-CccccHHHHHHHHHcCC---CeeEEEeEEEEEeCCcccccCceeEEEE--EEEEEE-ECCcee-
Q psy5646           2 GKLYKDEDAVLSWNG-HGTKGSQAIVKYISELP---PCDHELKSMDIHRLPEEAAQNQIAYLIS--TSGTVV-YKNMKK-   73 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG-~~~~G~~~I~~~l~~lp---~~~h~i~s~D~q~~~~~~~~~~~~ili~--V~G~v~-~~~~~~-   73 (106)
                      ..+|.+ ++.+.-.| ..+.|+++|.+++..+.   ...|.+.........+       ..++.  ..+... -+|.+. 
T Consensus        28 ~~l~a~-Da~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~v~~~gd-------~A~~~~~~~~~~~~~~G~~~~   99 (129)
T 3hx8_A           28 ASKYMD-DAAAFPPDMARVDGRQNIQKLWQGAMDMGISELKLTTLDVQESGD-------FAFESGSFSLKAPGKDSKLVD   99 (129)
T ss_dssp             HTTEEE-EEEEECTTSCCEESHHHHHHHHHHHHHTTCEEEEEEEEEEEEETT-------EEEEEEEEEEEEECTTSCEEE
T ss_pred             HHhhCC-CeEEeCCCCCcccCHHHHHHHHHHHHhCCCceEEEEEEEEEcCCC-------EEEEEEEEEEEeeCCCCCeee
Confidence            468888 88885443 46899999999887653   3677777666664333       22222  222222 134432 


Q ss_pred             eeeeEEEEEEEe-CCeEEEEceeEE
Q psy5646          74 TGFNQNFIISAE-GARWKIISDVFR   97 (106)
Q Consensus        74 ~~F~qtFvL~~~-~~~y~I~nD~fR   97 (106)
                      ..-.-+.++... +++|.|..|.+-
T Consensus       100 ~~g~~~~v~~r~~dG~W~i~~~~~~  124 (129)
T 3hx8_A          100 AAGKYVVVWRKGQDGGWKLYRDIWN  124 (129)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             eeEEEEEEEEECCCCcEEEEEeecc
Confidence            233456667777 799999999874

>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27

Probab=96.78  E-value=0.024  Score=35.02  Aligned_cols=91  Identities=14%  Similarity=0.210  Sum_probs=52.8

Q ss_pred             CCCCCCCCceEEEcCC-ccccHHHHHHHHHcCC-Ce--eEEEeEEEEEeCCcccccCceeEEEE--EEEEEEE--CCce-
Q psy5646           2 GKLYKDEDAVLSWNGH-GTKGSQAIVKYISELP-PC--DHELKSMDIHRLPEEAAQNQIAYLIS--TSGTVVY--KNMK-   72 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~-~~~G~~~I~~~l~~lp-~~--~h~i~s~D~q~~~~~~~~~~~~ili~--V~G~v~~--~~~~-   72 (106)
                      ..+|.+ ++.+...|. +..|+++|.+.+..+. ..  ...+...+.....+      ...++.  ..|....  ++.+ 
T Consensus        33 ~~l~a~-D~v~~~~~~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~i~~~~g------d~a~~~~~~~~~~~~~~~g~~~  105 (135)
T 3d9r_A           33 IATYTD-DGVLMGPGRPAAVGKDELAEVYLSVFETVGFDMAYEIKEVVQTSA------DWAFVRSATEGTETNKATGVVT  105 (135)
T ss_dssp             HHTEEE-EEEEECTTSCCEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEET------TEEEEEEEEEEEEEETTTCCEE
T ss_pred             HHhcCC-CEEEECCCCCcccCHHHHHHHHHHHHhhcCCceeEEEEEEEEecC------CEEEEEEEEEEEEecCCCCCce
Confidence            357888 887765554 5579999999987754 11  22222222222111      122222  2343333  2332 


Q ss_pred             eeeeeEEEEEEEe-CCeEEEEceeEEee
Q psy5646          73 KTGFNQNFIISAE-GARWKIISDVFRLQ   99 (106)
Q Consensus        73 ~~~F~qtFvL~~~-~~~y~I~nD~fR~~   99 (106)
                      ......++++... +++|+|..+.|...
T Consensus       106 ~~~~~~~~v~~~~~dG~W~i~~~~~s~~  133 (135)
T 3d9r_A          106 PAAYQELFLLRKSATGSWQTARYCTSKI  133 (135)
T ss_dssp             EEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             eecccEEEEEEecCCCcEEEEEEeeccc
Confidence            2235567888887 89999999999765

>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}

Probab=96.64  E-value=0.055  Score=34.86  Aligned_cols=90  Identities=16%  Similarity=0.203  Sum_probs=52.2

Q ss_pred             CCCCCCCCceEEE--cCCccccHHHHHHHHHcCCC-e-eEEEeEEEEEeCCcccccCceeEEEEEEEEEE--E---CCce
Q psy5646           2 GKLYKDEDAVLSW--NGHGTKGSQAIVKYISELPP-C-DHELKSMDIHRLPEEAAQNQIAYLISTSGTVV--Y---KNMK   72 (106)
Q Consensus         2 ~~~Y~~~~s~l~~--nG~~~~G~~~I~~~l~~lp~-~-~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~--~---~~~~   72 (106)
                      ..+|.+ ++.+..  .|....|+++|.+.+..+.. . ...+..-+.+...+      ...++  .|...  .   +|.+
T Consensus        42 ~~l~a~-Dav~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~i~~~~i~~~~g------d~A~~--~~~~~~~~~~~~G~~  112 (156)
T 3h51_A           42 ADLYAP-DGVLLPTVSNEVRASREQIENYFEMFLTKKPKGVINYRTVRLLDD------DSAVD--AGVYTFTLTDKNGKK  112 (156)
T ss_dssp             HTTEEE-EEEEECSSCSSCBCSHHHHHHHHHHHGGGCCEEEEEEEEEEECSS------SEEEE--EEEEEEEEECTTSCE
T ss_pred             HhhcCC-CEEEecCCCCccccCHHHHHHHHHHHHhhCCCCcccceEEEEecC------CeEEE--EEEEEEEEEcCCCCe
Confidence            468888 876642  34568999999988876531 1 12222223333212      12222  33332  2   2432


Q ss_pred             -eeeeeEEEEEEEeCCeEEEEceeEEeee
Q psy5646          73 -KTGFNQNFIISAEGARWKIISDVFRLQQ  100 (106)
Q Consensus        73 -~~~F~qtFvL~~~~~~y~I~nD~fR~~~  100 (106)
                       ...--.|+++...+++|+|..+......
T Consensus       113 ~~~~~r~t~v~~r~dG~WkIv~~H~S~~p  141 (156)
T 3h51_A          113 SDVQARYTFVYEKRDGKWLIINHHSSAMP  141 (156)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEEEEEEECS
T ss_pred             EEEEeEEEEEEEEECCEEEEEEEeecCCC
Confidence             2344677888888999999999887654

>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}

Probab=96.43  E-value=0.027  Score=36.39  Aligned_cols=88  Identities=15%  Similarity=0.124  Sum_probs=51.6

Q ss_pred             CCCCCCCCceEEEcCCccccHHHHHHHHHcCC---CeeEEEeEEEEEeCCcccccCceeEE-EEEEEEEEEC-C-c-eee
Q psy5646           2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISELP---PCDHELKSMDIHRLPEEAAQNQIAYL-ISTSGTVVYK-N-M-KKT   74 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp---~~~h~i~s~D~q~~~~~~~~~~~~il-i~V~G~v~~~-~-~-~~~   74 (106)
                      ..+|.+ ++.+...|.+..|+++|.+.+...-   ........-+++...+      .++. -......... + . ..+
T Consensus        39 ~al~a~-D~v~~~~g~~~~Gr~ai~a~~~~~~~~~~~~~~~~~~~i~v~GD------~A~~~~~~~~~~t~~~~g~~~~~  111 (139)
T 3rob_A           39 SSLMTD-DVVFLTPGRLPFGKEEFLAACEQNDQRVIIEASATFEEIVIVEP------MAYTRTHLHIKVTPRSGGAVREL  111 (139)
T ss_dssp             HHTEEE-EEEEECTTSCCBCHHHHHHHHHHHHHHEEEEEEEEEEEEEEETT------EEEEEEEEEEEEEETTSCCCEEE
T ss_pred             HHHccC-cEEEECCCCCccCHHHHHHHHHHHHHhcCCCCceEEEEEEEcCC------eEEEEEEEEEEEecCCCCceeEe
Confidence            468999 9888888888889999998875432   1223333334444333      1222 1112223322 2 2 233


Q ss_pred             eeeEEEEEEE-eCCeEEEEceeE
Q psy5646          75 GFNQNFIISA-EGARWKIISDVF   96 (106)
Q Consensus        75 ~F~qtFvL~~-~~~~y~I~nD~f   96 (106)
                      ....++++.+ .+++|+|.-|.-
T Consensus       112 ~g~~~~v~rK~~dG~W~i~~d~~  134 (139)
T 3rob_A          112 AGHAMSIFRRSMFGEWQLARDAN  134 (139)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEE
T ss_pred             eccEEEEEEECCCCcEEEEEEhh
Confidence            4447788888 569999998863

>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}

Probab=96.38  E-value=0.049  Score=35.21  Aligned_cols=90  Identities=8%  Similarity=0.094  Sum_probs=56.8

Q ss_pred             CCCCCCCCceEE--E-cCCccccHHHHHHHHHcC----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECC--ce
Q psy5646           2 GKLYKDEDAVLS--W-NGHGTKGSQAIVKYISEL----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKN--MK   72 (106)
Q Consensus         2 ~~~Y~~~~s~l~--~-nG~~~~G~~~I~~~l~~l----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~--~~   72 (106)
                      ..+|.+ +..++  . .|..+.|+++|.+.|..+    +..++++..+.+....+       ..++.+...+...+  .+
T Consensus        30 ~al~a~-d~~v~~v~p~g~~l~G~~ai~~~w~~~f~~~~~~~i~~~~v~v~~~gd-------~A~v~~~e~~~~~~~~g~  101 (144)
T 3gwr_A           30 MAVWAR-DDHVACIHPLAAPLNGRAAVAAGWRSMFGAAGRFRLQVKAVHEIRQAD-------HVIRIVDEFLTIGDETAP  101 (144)
T ss_dssp             HHHBCS-SSCCEEECTTCCCEESHHHHHHHHHHHHHHHCCEEEEEEEEEEEECSS-------EEEEEEEEEEEETTCSSC
T ss_pred             HhhccC-CCCEEEECCCCCCcccHHHHHHHHHHHHcCCCcEEEEEEEEEEEecCC-------EEEEEEEEEEEecCCCCc
Confidence            357888 64333  3 346889999999888653    24444444444443332       45666666676532  22


Q ss_pred             eeeeeEEEEEEEeCCeEEEEceeEEee
Q psy5646          73 KTGFNQNFIISAEGARWKIISDVFRLQ   99 (106)
Q Consensus        73 ~~~F~qtFvL~~~~~~y~I~nD~fR~~   99 (106)
                      ...+--|.++...+++|+|....--..
T Consensus       102 ~~~~r~T~V~~r~~g~WrivhhH~S~~  128 (144)
T 3gwr_A          102 RPAILATNVYRREADGWRMVLHHASPL  128 (144)
T ss_dssp             CCCEEEEEEEEECSSSEEEEEEEEEEC
T ss_pred             eeeEEEEEEEEEECCEEEEEEEecCCC
Confidence            255677888888889999998876544

>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22

Probab=96.35  E-value=0.014  Score=37.03  Aligned_cols=87  Identities=16%  Similarity=0.201  Sum_probs=50.2

Q ss_pred             CCCCCCCCceEEE-cCCccccHHHHHHHHHcCCC-----eeEEEeEEEEEeCCcccccCceeEEEEEEEEEE--ECCce-
Q psy5646           2 GKLYKDEDAVLSW-NGHGTKGSQAIVKYISELPP-----CDHELKSMDIHRLPEEAAQNQIAYLISTSGTVV--YKNMK-   72 (106)
Q Consensus         2 ~~~Y~~~~s~l~~-nG~~~~G~~~I~~~l~~lp~-----~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~--~~~~~-   72 (106)
                      ..+|.+ ++.+.. .|.+..|+++|.+.+..+..     ....+.........+       ..++.....+.  .+|.+ 
T Consensus        25 ~~lfa~-Dav~~~~~g~~~~G~~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~gd-------~A~~~~~~~~~~~~~G~~~   96 (142)
T 2gxf_A           25 MNYYSE-DAVLVVKPGMIARGKEEIKKAFITIANYFNHHIVPTQGKMILLEAGD-------TVLVLSQTLLDSDKKDSEY   96 (142)
T ss_dssp             TTSEEE-EEEEECSSSCEEEHHHHHHHHHHHTTSCCCSSCCCEEEEEEEEEETT-------EEEEEEEEECCC-------
T ss_pred             HHhcCC-CEEEEcCCCCcccCHHHHHHHHHHHHHhhCCCceEEEEEEEEEEcCC-------EEEEEEEEEEEECCCCCeE
Confidence            578988 888854 57789999999999986542     334444444444333       23332222222  22332 


Q ss_pred             eeeeeEEEEEEEe-CCeEEEEceeE
Q psy5646          73 KTGFNQNFIISAE-GARWKIISDVF   96 (106)
Q Consensus        73 ~~~F~qtFvL~~~-~~~y~I~nD~f   96 (106)
                      .....-+++++.+ +++|+|.-|..
T Consensus        97 ~~~g~~t~v~~r~~dG~Wri~~d~~  121 (142)
T 2gxf_A           97 AMERRATYVFKKNAQGEWLCVIDNS  121 (142)
T ss_dssp             --EEEEEEEEEECTTSCEEEEEEET
T ss_pred             eeeEEEEEEEEECCCCCEEEEEECC
Confidence            1222347788874 68899988753

>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*

Probab=96.28  E-value=0.073  Score=33.51  Aligned_cols=89  Identities=12%  Similarity=0.120  Sum_probs=56.6

Q ss_pred             CCCCCCCceEEE---cCCccccHHHHHHHHHcC----C-CeeEEEeEEEEEeCCcccccCceeEEEE---EEEEEEEC--
Q psy5646           3 KLYKDEDAVLSW---NGHGTKGSQAIVKYISEL----P-PCDHELKSMDIHRLPEEAAQNQIAYLIS---TSGTVVYK--   69 (106)
Q Consensus         3 ~~Y~~~~s~l~~---nG~~~~G~~~I~~~l~~l----p-~~~h~i~s~D~q~~~~~~~~~~~~ili~---V~G~v~~~--   69 (106)
                      ++|.+ +..+.-   .|..+.|.++|.+.+...    + ..+.++.....+...+.      .+++.   +.+  ..+  
T Consensus        36 ~l~a~-d~~~~~~~~~g~~~~G~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~gd~------aav~~~~~~~~--~~~~~  106 (143)
T 2ux0_A           36 KICDP-GLTSFEPEALGNLVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVIGED------AACIAYIRLTQ--YIDGQ  106 (143)
T ss_dssp             HHEEE-EEEEECGGGTTCEEEHHHHHHHHHHHTTTTCCSCEEEEEEEEEEEECSTT------EEEEEEEEEEE--EECTT
T ss_pred             HhcCC-CcEEEeccCCCcEEEcHHHHHHHHHhhhhcCCCceeEEEeCCEEEEecCc------EEEEEEeEeee--eecCC
Confidence            45767 655542   367889999999988775    2 34556666666666542      33222   233  223  


Q ss_pred             Cce-eeeeeEEEEEEEeCCeEEEEceeEEeee
Q psy5646          70 NMK-KTGFNQNFIISAEGARWKIISDVFRLQQ  100 (106)
Q Consensus        70 ~~~-~~~F~qtFvL~~~~~~y~I~nD~fR~~~  100 (106)
                      |.+ ....-.|+++...+++|+|..+..-...
T Consensus       107 g~~~~~~~r~T~v~~k~~g~Wkivh~H~S~~~  138 (143)
T 2ux0_A          107 GRPRTSQSEETRVWHRRDGKWLNVHYHCSGAP  138 (143)
T ss_dssp             SCEEEEEEEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             CCeeeeeEEEEEEEEEECCEEEEEEEeeCCCC
Confidence            332 3456688888999999999998776543

>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16

Probab=96.15  E-value=0.036  Score=35.44  Aligned_cols=85  Identities=11%  Similarity=0.084  Sum_probs=51.3

Q ss_pred             CCCCCCCceEEEcCCccccHHHHHH-HHHc----CCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEE--CCce-ee
Q psy5646           3 KLYKDEDAVLSWNGHGTKGSQAIVK-YISE----LPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVY--KNMK-KT   74 (106)
Q Consensus         3 ~~Y~~~~s~l~~nG~~~~G~~~I~~-~l~~----lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~--~~~~-~~   74 (106)
                      .+|.+ ++.+...+....|+++|.+ .+..    ++...+++.....+...+       ..++.....+..  +|.+ ..
T Consensus        53 ~l~a~-Da~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~gd-------~A~~~~~~~~~~~~~G~~~~~  124 (148)
T 3bb9_A           53 QSLAA-NVQIYEGGKVERSLTEYANHHMLADMAYLKGLTITPKEHQITITGD-------IAISTSISHAQGEYKGKSIDS  124 (148)
T ss_dssp             HHEEE-EEEEEETTEEECSHHHHHHTHHHHHHHHHHTEEEEEEEEEEEEETT-------EEEEEEEEEEEECCC--CEEE
T ss_pred             HhhCC-CeEEEeCCCccCCHHHHHHHhHHHHHHhccCceEEeeeEEEEEcCC-------EEEEEEEEEEeeeeCCccccc
Confidence            46778 8776655556889999988 5543    235566666555554433       233333333332  2332 33


Q ss_pred             eeeEEEEE-EEeCCeEEEEcee
Q psy5646          75 GFNQNFII-SAEGARWKIISDV   95 (106)
Q Consensus        75 ~F~qtFvL-~~~~~~y~I~nD~   95 (106)
                      .+--|+++ ...+++|+|....
T Consensus       125 ~~r~T~v~~~k~~g~WkIvh~H  146 (148)
T 3bb9_A          125 MTMETLVLIKQADGRWKITHVH  146 (148)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEE
T ss_pred             ceEEEEEEeEEcCCcEEEEEEE
Confidence            56678888 8888999998764

>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16

Probab=95.73  E-value=0.17  Score=31.14  Aligned_cols=84  Identities=18%  Similarity=0.198  Sum_probs=50.8

Q ss_pred             CCC--CCCCceEEEcCCccccHHHHHHHHHc-CC----CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc--ee
Q psy5646           3 KLY--KDEDAVLSWNGHGTKGSQAIVKYISE-LP----PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM--KK   73 (106)
Q Consensus         3 ~~Y--~~~~s~l~~nG~~~~G~~~I~~~l~~-lp----~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~--~~   73 (106)
                      .+|  .+ +..++.-|....|.++|.+.+.. ++    ....++.-.+.+.+.+       .+ ..|.|...+.+.  .+
T Consensus        28 ~~y~~~~-d~~~~~~~~~~~G~~~i~~~~~~~f~~~~~~~~l~~~~~~~~~~~~-------~~-a~v~~~~~~~~~~~~~   98 (122)
T 3b7c_A           28 QGYWQNE-QLMLISNGKFRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLSN-------YA-AMVVGRWDLKRLKDTP   98 (122)
T ss_dssp             TTBCCST-TCEEECSSCEEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEEET-------TE-EEEEEEEEEECSSCCC
T ss_pred             HhhcCCC-CEEEECCCccccCHHHHHHHHHHhcCChhhcCeeEEEEEEEEEcCC-------CE-EEEEEEEEEEccCCCC
Confidence            567  55 66555445578999999987654 44    2445555566665422       12 223444444322  22


Q ss_pred             eeeeEEEEEEEeCCeEEEEceeE
Q psy5646          74 TGFNQNFIISAEGARWKIISDVF   96 (106)
Q Consensus        74 ~~F~qtFvL~~~~~~y~I~nD~f   96 (106)
                      . -.-|+++...+++|+|..+..
T Consensus        99 ~-~r~T~v~~k~~g~W~Iv~~H~  120 (122)
T 3b7c_A           99 T-GVFTLLVEKIDDRWVITMDHS  120 (122)
T ss_dssp             E-EEEEEEEEEETTEEEEEEEEE
T ss_pred             C-cEEEEEEEEeCCCEEEEEEec
Confidence            2 246888899999999998753

>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0

Probab=95.49  E-value=0.14  Score=32.24  Aligned_cols=83  Identities=14%  Similarity=0.282  Sum_probs=52.8

Q ss_pred             CCCCCCCCceEE--EcCC-ccc-cHHHHHHHHHc---CCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceee
Q psy5646           2 GKLYKDEDAVLS--WNGH-GTK-GSQAIVKYISE---LPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKT   74 (106)
Q Consensus         2 ~~~Y~~~~s~l~--~nG~-~~~-G~~~I~~~l~~---lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~   74 (106)
                      .+.|++ ++.+.  .+|. ... ..++..+.+.+   .|..+|+|.++|...  +       ...+.|    ....-+..
T Consensus        34 ~~~f~p-da~~~~~~~G~~l~~~~~~e~~~~v~~~~p~~~~~~~I~~I~i~g--d-------~A~a~v----~~~~~~~~   99 (125)
T 3duk_A           34 SAAFHK-DATIFGYVGDKLAFNGPIKDLYDWHNSNGPAKNVQSRITNIDIVG--T-------VAHARV----EAENWTNF   99 (125)
T ss_dssp             GGGEEE-EEEEEEEETTEEEEEEETHHHHHHHHHHCCCTTCEEEEEEEEEET--T-------EEEEEE----EEECSSSC
T ss_pred             HHhCCC-CcEEEEEcCCCEEeeCCHHHHHHHHhccCCCCcccceEEEEEEEC--C-------EEEEEE----EEEEcCCC
Confidence            456777 88775  3555 222 34555555542   347788898888763  2       122222    11111236


Q ss_pred             eeeEEEEEEEeCCeEEEEceeEEe
Q psy5646          75 GFNQNFIISAEGARWKIISDVFRL   98 (106)
Q Consensus        75 ~F~qtFvL~~~~~~y~I~nD~fR~   98 (106)
                      .|...|.|...+++|.|.|-+|+.
T Consensus       100 ~f~D~l~L~k~dg~WkIv~K~~~~  123 (125)
T 3duk_A          100 KFSDLFLLLKLDGKWTIVNKVFHL  123 (125)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEEEEEEEeCCEEEEEEEEEEe
Confidence            899999999999999999999975

>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25

Probab=95.33  E-value=0.31  Score=31.49  Aligned_cols=92  Identities=13%  Similarity=0.139  Sum_probs=56.1

Q ss_pred             CCCCCCCCceEEEcCCccccHHHHHHHHHcC---CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEE-CCcee-eee
Q psy5646           2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISEL---PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVY-KNMKK-TGF   76 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~l---p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~-~~~~~-~~F   76 (106)
                      ..+|.+ ++.+...|....|+++|.+.+...   +.+.|.+.........+.+     .+...+...... +|... ..-
T Consensus        36 ~~lf~~-Da~~~~~g~~~~G~~~i~~~~~~~~~~~~~~h~~~~~~i~~~gd~A-----~~~~~~~~~~~~~~g~~~~~~g  109 (170)
T 2chc_A           36 AGCFTE-DGAFEFDGWVIRGRPALREYADAHARVVRGRHLTTDLLYEVDGDVA-----TGRSASVVTLATAAGYKILGSG  109 (170)
T ss_dssp             HTTEEE-EEEEEETTEEEESHHHHHHHHHHHHHHCCCCEEEEEEEEEEETTEE-----EEEEEEEEEEEETTEEEEEEEE
T ss_pred             HhcccC-cEEEEeCCCCcCCHHHHHHHHHHhhcccceEEecCCeEEEEeCCEE-----EEEEEEEEEEEcCCCCEEEEEE
Confidence            367888 898888887889999999888664   4678887766655433211     111111111111 22211 122


Q ss_pred             eEEEEEEEeCCeEEEEceeEEee
Q psy5646          77 NQNFIISAEGARWKIISDVFRLQ   99 (106)
Q Consensus        77 ~qtFvL~~~~~~y~I~nD~fR~~   99 (106)
                      .-+..+...+++|+|..-.+.+.
T Consensus       110 ~y~d~~~r~dg~Wri~~r~~~~~  132 (170)
T 2chc_A          110 EYQDRLIKQDGQWRIAYRRLRND  132 (170)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEEEECCEEEEEEEEEEEe
Confidence            34556667789999999888765

>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28

Probab=95.16  E-value=0.33  Score=30.69  Aligned_cols=92  Identities=17%  Similarity=0.232  Sum_probs=56.0

Q ss_pred             CCCCCCCCceEEEcCCcc-ccHHHHHHHHHcCC-------CeeEEEeEEEEEeCCcccccCceeEEEEEEEEE--EECCc
Q psy5646           2 GKLYKDEDAVLSWNGHGT-KGSQAIVKYISELP-------PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTV--VYKNM   71 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~~~-~G~~~I~~~l~~lp-------~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v--~~~~~   71 (106)
                      ..+|.+ ++.+...+... .|+++|.+.+...+       .+.|.+.........+       ...+...-.+  ...+.
T Consensus        41 ~~lf~~-Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~h~~~~~~i~~~gd-------~A~~~~~~~~~~~~~~~  112 (155)
T 2rfr_A           41 SELWVE-DGEYAVVGFATAKGRAAIAALIDGQTHRALMADGCAHFLGPATVTVEGD-------TATARCHSVVFRCVSGT  112 (155)
T ss_dssp             HTTEEE-EEEEEETTSCCEESHHHHHHHHHSHHHHHHHHHCEEEEECCCEEEEETT-------EEEEEEEEEEEEEETTE
T ss_pred             HhhcCC-ceEEEcCCCccccCHHHHHHHHHhccccccCCCceeEeCCCeEEEEeCC-------EEEEEEEEEEEEEcCCC
Confidence            367888 88888776666 99999999998762       4778877655543332       1111111111  12222


Q ss_pred             e-eeee-eEEEEEEEeCCeEEEEceeEEeeec
Q psy5646          72 K-KTGF-NQNFIISAEGARWKIISDVFRLQQT  101 (106)
Q Consensus        72 ~-~~~F-~qtFvL~~~~~~y~I~nD~fR~~~~  101 (106)
                      . .... ..++.+...+++|+|..-.+++...
T Consensus       113 ~~~~~~g~y~d~~~r~~g~Wri~~r~~~~~~~  144 (155)
T 2rfr_A          113 FGSHRVSANRWTFRRTPAGWRAVRRENALLDG  144 (155)
T ss_dssp             EEEEEEEEEEEEEEEETTEEEEEEEEEEESSS
T ss_pred             ceEEEeeeeEEEEEECCCEEEEEEEEEEecCC
Confidence            1 1111 1346777888999999988877643

>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}

Probab=95.10  E-value=0.32  Score=30.35  Aligned_cols=90  Identities=17%  Similarity=0.114  Sum_probs=54.3

Q ss_pred             CCCCCCCCceEEEcC--CccccHHHHHHHH----HcCC-CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEEC--Cce
Q psy5646           2 GKLYKDEDAVLSWNG--HGTKGSQAIVKYI----SELP-PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK--NMK   72 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG--~~~~G~~~I~~~l----~~lp-~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~--~~~   72 (106)
                      ..+|.+ ++.+.--+  ....|+++|.+.+    ...| ..++++.....+...+       ..++...-.+...  +..
T Consensus        30 ~~l~a~-D~v~~~~~~~~~~~G~~air~~~~~~~~~~~~~~~~~~~~~~v~~~gd-------~A~~~~~~~~~~~~~~g~  101 (142)
T 3f7s_A           30 IAPYAD-DIVAFDAIQALQFKGKSAYTAHWEMCMGMCTGPMVFELAQLTVHAAGD-------LALAHWLNRCGPGDDESQ  101 (142)
T ss_dssp             HTTEEE-EEEEECSSSSSCEESHHHHHHHHHHHHHTCCSCEEEEEEEEEEEEETT-------EEEEEEEEEEEESSCGGG
T ss_pred             HhhcCC-CEEEecCCCCccccCHHHHHHHHHHHHHhCCCceEEEEeeeEEEEcCC-------EEEEEEEEEEeeecCCCc
Confidence            357877 76543222  2457999998775    4445 6677777776664443       2233222233321  113


Q ss_pred             eeeeeEEEEEEEeCCeEEEEceeEEee
Q psy5646          73 KTGFNQNFIISAEGARWKIISDVFRLQ   99 (106)
Q Consensus        73 ~~~F~qtFvL~~~~~~y~I~nD~fR~~   99 (106)
                      ....-.|+++...+++|+|..+..-+-
T Consensus       102 ~~~~r~T~v~~r~~g~W~ivh~H~S~p  128 (142)
T 3f7s_A          102 CGFMRATVGYRRQGGQWQVIHEHWSAP  128 (142)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred             ceeeEEEEEEEEeCCEEEEEEEeeccC
Confidence            444567888889999999998877653

>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18

Probab=94.58  E-value=0.45  Score=29.46  Aligned_cols=85  Identities=15%  Similarity=0.138  Sum_probs=51.4

Q ss_pred             CCCCCCCceE-E-EcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeE
Q psy5646           3 KLYKDEDAVL-S-WNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQ   78 (106)
Q Consensus         3 ~~Y~~~~s~l-~-~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~q   78 (106)
                      ++|.+ ++.+ . ..|....|.++|.++-..++  ....++.........+.      ...  +...+...+. .....+
T Consensus        37 ~lf~~-d~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d------~A~--~~~~~~~~~~-~~~g~~  106 (129)
T 2rcd_A           37 ELFWH-DEKTVRYGAGENLYGIEEIRAFRLARPSAGLDRALRNTVITTYGHD------MAV--ASTEFTRTGS-TKIGRQ  106 (129)
T ss_dssp             HHBCC-STTCEEEETTEEEESHHHHHHHHHHSCCTTCCCEEEEEEEEEBTTS------EEE--EEEEEECSSC-CSCEEE
T ss_pred             HhccC-CCCEEEECCCCccCCHHHHHHHHHhcCCCCCceEEEEEEEEEecCc------EEE--EEEEEEEcCC-CCceeE
Confidence            56777 6543 2 35668899999999335555  24455545555444331      222  3344444432 233456


Q ss_pred             EEEEEEeCCeEEEEceeEE
Q psy5646          79 NFIISAEGARWKIISDVFR   97 (106)
Q Consensus        79 tFvL~~~~~~y~I~nD~fR   97 (106)
                      |.++...+++|+|.....-
T Consensus       107 t~v~~r~~~gWrIv~~H~S  125 (129)
T 2rcd_A          107 MQTWVKMPEGWRIVAAHVS  125 (129)
T ss_dssp             EEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEECCCcEEEEEEecC
Confidence            8888889999999987654

>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17

Probab=94.26  E-value=0.37  Score=32.26  Aligned_cols=78  Identities=8%  Similarity=0.038  Sum_probs=48.9

Q ss_pred             CCccccHHHHHHHHHcC----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc---------ee--eeeeEEE
Q psy5646          16 GHGTKGSQAIVKYISEL----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM---------KK--TGFNQNF   80 (106)
Q Consensus        16 G~~~~G~~~I~~~l~~l----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~---------~~--~~F~qtF   80 (106)
                      |..+.|+++|.+.+...    |..++++..+......+       ..++.+...+...+.         +.  +.+--|.
T Consensus        65 ~~~l~G~~~I~~~~~~~f~~~~~~~~~~~dv~v~~~gD-------~A~v~~~~~~~~~~~~~~g~~~~g~~~~~~~raT~  137 (170)
T 3cnx_A           65 WPVLSGRGEVLRSYALIMANTEYIQFFLTDVHVSVTGD-------TALVTCTENILSGGPPPDDSDELGPLVGQLVVATN  137 (170)
T ss_dssp             CCEEEHHHHHHHHHHHHHHTCSEEEEEEEEEEEEEETT-------EEEEEEEEEEEEEC---------CCCEEEEEEEEE
T ss_pred             CccccCHHHHHHHHHHHHccCCeeEEEEEEEEEEEeCC-------EEEEEEEEEEeccCCccccccccCccccceEEEEE
Confidence            46789999999877543    23455555555544443       345555555554211         21  2255788


Q ss_pred             EEEEeCCeEEEEceeEEeee
Q psy5646          81 IISAEGARWKIISDVFRLQQ  100 (106)
Q Consensus        81 vL~~~~~~y~I~nD~fR~~~  100 (106)
                      ++...+++|+|..+..-.+.
T Consensus       138 Vfrr~~ggWriv~hH~Sp~~  157 (170)
T 3cnx_A          138 VFRRTPDGWKLWSHHASPVL  157 (170)
T ss_dssp             EEECCTTCCEEEEEEEEECC
T ss_pred             EEEEECCEEEEEEEecCCCC
Confidence            88888899999998776544

>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*

Probab=93.87  E-value=0.22  Score=36.79  Aligned_cols=86  Identities=14%  Similarity=0.198  Sum_probs=62.5

Q ss_pred             CCCCCCCceEE--EcCCccccHHHHHHHHHcCC-CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEEC--Cc-eeeee
Q psy5646           3 KLYKDEDAVLS--WNGHGTKGSQAIVKYISELP-PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK--NM-KKTGF   76 (106)
Q Consensus         3 ~~Y~~~~s~l~--~nG~~~~G~~~I~~~l~~lp-~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~--~~-~~~~F   76 (106)
                      .||.+ ++.|.  ++ .++.|+++|..++.+-- ..+.....--+.|..+      +..-+.|+|.|+..  |. ..+.=
T Consensus       215 aLFA~-Dg~LepPf~-~PIvGreAI~~y~~~eaq~~~l~P~~g~~ep~e~------g~~qi~vtGkVqTpwfGv~v~mnV  286 (323)
T 3mg1_A          215 ELFTS-DGALQPPFQ-RPIVGKENVLRFFREECQNLKLIPERGVTEPAED------GFTQIKVTGKVQTPWFGGNVGMNI  286 (323)
T ss_dssp             TTEEE-EEEEECTTS-CCEESHHHHHHHHHHHCTTCEEEEEEEEEEECGG------GCEEEEEEEEEECTTTGGGCCEEE
T ss_pred             HHccC-CCeeCCCCC-CCccCHHHHHHHHHHHhccCEEeeccCccccccC------CCceEEEEEEEEcccCCccccccc
Confidence            46666 66655  34 79999999999996644 6677777777778877      47899999999954  22 23455


Q ss_pred             eEEEEEEEeCCeEEEEceeE
Q psy5646          77 NQNFIISAEGARWKIISDVF   96 (106)
Q Consensus        77 ~qtFvL~~~~~~y~I~nD~f   96 (106)
                      .-.|.|-+++.-++|.=|.+
T Consensus       287 aW~F~lN~~gkI~~v~i~LL  306 (323)
T 3mg1_A          287 AWRFLLNPEGKIFFVAIDLL  306 (323)
T ss_dssp             EEEEEECTTSCEEEEEEEEB
T ss_pred             eeEEEECCCCcEEEEEehhh
Confidence            67889988888777775543

>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28

Probab=93.55  E-value=0.88  Score=29.08  Aligned_cols=94  Identities=15%  Similarity=0.201  Sum_probs=55.0

Q ss_pred             CCCCCCCCceEEEcC-C--ccccHHHHHHHHHcC----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEEC-Ccee
Q psy5646           2 GKLYKDEDAVLSWNG-H--GTKGSQAIVKYISEL----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK-NMKK   73 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG-~--~~~G~~~I~~~l~~l----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~-~~~~   73 (106)
                      ..+|.+ ++.+.+.+ .  ...|+++|.+.+...    +.+.|.+.......+.++.    -.+...+.....-+ +.+.
T Consensus        51 ~~lfte-Da~~~~~~~g~~~~~G~~~i~~~~~~~~~~~~~~~h~~~~~~I~~~~gd~----A~~~~~~~~~~~~~~g~~~  125 (163)
T 3b8l_A           51 LDVFTE-DAVFDLSGIGLTPQVGHAGIREFFTNVFANMSHHAHYLTNFAVTGYEGDT----ASMRAYVIGMGVGKDGRAV  125 (163)
T ss_dssp             HTTEEE-EEEEECGGGTCCCEEHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEECSSE----EEEEEEEEEEEEETTSCEE
T ss_pred             HhhcCC-CEEEEecCCCCCCccCHHHHHHHHHHhhccCCceEEEecCEEEEEeCCCE----EEEEEEEEEEEEcCCCCeE
Confidence            357888 88876632 2  688999999888653    3667888776665332210    01111122211112 2222


Q ss_pred             -eeeeEEEEEEEeCCeEEEEceeEEeee
Q psy5646          74 -TGFNQNFIISAEGARWKIISDVFRLQQ  100 (106)
Q Consensus        74 -~~F~qtFvL~~~~~~y~I~nD~fR~~~  100 (106)
                       ..-.-++.+...+++|+|..-.+++.-
T Consensus       126 ~~~g~y~d~~~r~dg~WrI~~r~~~~~~  153 (163)
T 3b8l_A          126 TVNGRYFFEVRRTEKGWKATRYTMDFLM  153 (163)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEESS
T ss_pred             EEEEEEEEEEEEeCCEEEEEEEEEEEEe
Confidence             122356677788899999998887653

>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24

Probab=93.44  E-value=0.086  Score=33.85  Aligned_cols=90  Identities=12%  Similarity=0.137  Sum_probs=50.9

Q ss_pred             CCCCCCCCceEEEcCCccccHHHHHHHHHcC----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc-eeeee
Q psy5646           2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISEL----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM-KKTGF   76 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~l----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~-~~~~F   76 (106)
                      ..||.| ++.+...|.+..|+++|.+++..+    |.++|.+.......-.     +...+-..++|+.+ +|. -....
T Consensus        29 ~~Lfa~-Dav~~~~~~~~~G~~ai~~F~~~~~~a~~~~~~~~~~~v~~~~g-----d~~~~~w~~~g~~~-~G~~~~~~g  101 (131)
T 3er7_A           29 ISLFSD-EITFVLNGQEQHGIDAWKQFVRMVFTANQDIKHMYAGWVPSETG-----DTMETRWAVCGKSA-DGSVFTQDG  101 (131)
T ss_dssp             HHTEEE-EEEEEETTEEEESHHHHHHHHHHHHHHEEEEEEEECCCEECSST-----TCEEEEEEEEEEET-TSCEEEEEE
T ss_pred             HHHhCC-CeEecCCCCCcCChHHHHHHHHHHHhhCcCceEEEEEEEEecCC-----CEEEEEEEEEEEEC-CCCEEEEee
Confidence            358999 998855677789999999999876    4667766543322111     11345666667632 232 23333


Q ss_pred             eEEEEEEEeC--CeEEEEceeEEe
Q psy5646          77 NQNFIISAEG--ARWKIISDVFRL   98 (106)
Q Consensus        77 ~qtFvL~~~~--~~y~I~nD~fR~   98 (106)
                      .-.|-+..++  ....+..|.+-+
T Consensus       102 ~dv~~fd~dGkI~~~~~~~d~~~~  125 (131)
T 3er7_A          102 TDIARLNADGKIVYLANVPDDTAM  125 (131)
T ss_dssp             EEEEEECTTSCEEEEEEEECCC--
T ss_pred             eEEEEEcCCCcEEEEEEccChHHH
Confidence            4444444334  345555555433

>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18

Probab=93.32  E-value=0.91  Score=28.60  Aligned_cols=88  Identities=14%  Similarity=0.143  Sum_probs=53.3

Q ss_pred             CCCCCCCce-EEEc-CCccccHHHHHHHHHcCCC--eeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeE
Q psy5646           3 KLYKDEDAV-LSWN-GHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQ   78 (106)
Q Consensus         3 ~~Y~~~~s~-l~~n-G~~~~G~~~I~~~l~~lp~--~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~q   78 (106)
                      .+|.+ +.. +.+. |....|.++|..+...++.  .++.+.....+...+.      ...+  ...+...+.+ ..+-+
T Consensus        34 ~lf~~-d~~~v~~~~g~~l~G~~~I~a~r~~~~~~~~~~~~~~~~i~~~g~d------~A~~--~~~~~~~~~~-~~gr~  103 (129)
T 2owp_A           34 ALFWH-TPETVRYGIAEVQHGGEAIRAWRERCEPVPKSRKLHRTVVTTFGTD------FATV--STEFTSDATP-LLGRQ  103 (129)
T ss_dssp             HTBCC-STTCEEECSSCEEESHHHHHHHHHHSCCCCTTCEEEEEEEEEETTT------EEEE--EEEEEETTEE-EEEEE
T ss_pred             hhccC-CCcEEEeCCCCccCCHHHHHHHHHhcCCCCCceeecccEEEEecCC------EEEE--EEEEEECCCC-cceEE
Confidence            56777 654 5453 4578999999998877763  3555555555555431      2222  2344555554 23345


Q ss_pred             EEEEEEeC--CeEEEEceeEEeee
Q psy5646          79 NFIISAEG--ARWKIISDVFRLQQ  100 (106)
Q Consensus        79 tFvL~~~~--~~y~I~nD~fR~~~  100 (106)
                      |.+....+  ++|+|.....-.+.
T Consensus       104 t~vw~r~~~~~gWrIv~~H~S~~~  127 (129)
T 2owp_A          104 MQTWARLSPADGWKIVAAHVSLIA  127 (129)
T ss_dssp             EEEEEECSTTTCEEEEEEEEEEEC
T ss_pred             EEEEEECCCCCCEEEEEeeecCCC
Confidence            55556666  89999988766553

>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15

Probab=93.09  E-value=0.81  Score=27.35  Aligned_cols=85  Identities=13%  Similarity=0.079  Sum_probs=49.0

Q ss_pred             CCCCCCceEEEcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEE--ECCce-eeeeeE
Q psy5646           4 LYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVV--YKNMK-KTGFNQ   78 (106)
Q Consensus         4 ~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~--~~~~~-~~~F~q   78 (106)
                      ++.| +.....-+....|++++.+.+.+-+  ....++..+.++...+      ..+++. ...+.  .++.+ ...+-.
T Consensus        30 l~~~-d~~~~~~~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~g~------~a~~~~-~~~~~~~~~g~~~~~~~r~  101 (123)
T 2r4i_A           30 LLHD-DLLFIIPSGETVTKETDIAAYSSGKIALRAVVPSDYIIRIIHD------TVVVSV-NIEIKGEYMEHTLDNTFRY  101 (123)
T ss_dssp             HEEE-EEEEECTTSCEECHHHHHHHHHTTCEEEEEEEEEEEEEEEETT------EEEEEE-EEEEEEEETTEEEEEEEEE
T ss_pred             hhCc-CeEEECCCCCCccHHHHHHHHhcCCeEEEEEeecccEEEEECC------EEEEEE-EEEEEEEECCcceeEEEEE
Confidence            4455 4333333335678888777776654  3456667777777665      234433 22222  34543 223445


Q ss_pred             EEEEEEeCCeEEEEceeE
Q psy5646          79 NFIISAEGARWKIISDVF   96 (106)
Q Consensus        79 tFvL~~~~~~y~I~nD~f   96 (106)
                      |.+....+++|.|.....
T Consensus       102 t~vw~r~~g~W~iv~~h~  119 (123)
T 2r4i_A          102 LRVWKLFDGNWKVIAGSC  119 (123)
T ss_dssp             EEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEeCCeEEEEEEEE
Confidence            667777889999987654

>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14

Probab=90.35  E-value=2.1  Score=26.40  Aligned_cols=85  Identities=13%  Similarity=0.235  Sum_probs=49.8

Q ss_pred             CCCCCCCCceEEE-c-CCc--cccHHHHHHHHHcC----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCcee
Q psy5646           2 GKLYKDEDAVLSW-N-GHG--TKGSQAIVKYISEL----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKK   73 (106)
Q Consensus         2 ~~~Y~~~~s~l~~-n-G~~--~~G~~~I~~~l~~l----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~   73 (106)
                      .+.|++ ++.+.. . |..  ....++..+.+.+-    |...+.|.+++...  +       ...+.+... .+.   .
T Consensus        34 ~~~f~~-da~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~i~g--d-------~A~a~~~~~-~~~---~   99 (128)
T 3blz_A           34 RPAFSS-QATIFGVDVDNKLTGGPIQGLFDVIDNVFHPSPEAKAAIARIDIVG--T-------AASARIDTD-DIS---G   99 (128)
T ss_dssp             GGGEEE-EEEEEEECTTSCEEEEETHHHHHHHHHTCCCCTTCEEEEEEEEEET--T-------EEEEEEEEE-EET---T
T ss_pred             HHhhCC-CcEEEEEeCCCcEEecCHHHHHHHHHhcCCCCccccCeEEEEEEEC--C-------EEEEEEEEE-EcC---C
Confidence            356777 777654 2 222  22344555544333    46677776666542  3       122222221 222   2


Q ss_pred             eeeeEEEEEEEeCCeEEEEceeEEeee
Q psy5646          74 TGFNQNFIISAEGARWKIISDVFRLQQ  100 (106)
Q Consensus        74 ~~F~qtFvL~~~~~~y~I~nD~fR~~~  100 (106)
                      ..|...|.|...+++|.|.+-.|+...
T Consensus       100 ~~~~d~~~l~k~dg~WkI~~~~~~~~~  126 (128)
T 3blz_A          100 FRFTDFFNLLKVEGKWTVVSKIYHTHP  126 (128)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred             CceEEeEEEEEECCEEEEEEEEEEecc
Confidence            458888999999999999999988654

>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}

Probab=89.92  E-value=2  Score=27.33  Aligned_cols=89  Identities=11%  Similarity=0.079  Sum_probs=47.8

Q ss_pred             CCCCCCCCc--eEEEcCCccccHHHHHHHHHc--CC----CeeEEEeEEE-EEeCCcccccCceeE---EEEEEEEEEEC
Q psy5646           2 GKLYKDEDA--VLSWNGHGTKGSQAIVKYISE--LP----PCDHELKSMD-IHRLPEEAAQNQIAY---LISTSGTVVYK   69 (106)
Q Consensus         2 ~~~Y~~~~s--~l~~nG~~~~G~~~I~~~l~~--lp----~~~h~i~s~D-~q~~~~~~~~~~~~i---li~V~G~v~~~   69 (106)
                      ..+|.+ +.  ..+.-+....|.++|.+.+.+  +.    ...+.+.... .+...+      ..+   ...+.|.+..+
T Consensus        32 ~~l~~~-~~~~~~i~~~g~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~v~gd------~A~v~~~~~~~~~~~~~  104 (145)
T 3soy_A           32 KQLFYV-SPETSFIHPRGHERGWSQIAENFYGTTMGKTFSKRTLKLDAPPAIHVYGN------AAVAEFDWHFTAVRRDN  104 (145)
T ss_dssp             TTTBCC-SSSCEEEETTEEEESHHHHHHHCCCCCCCCTEEEEEEEESSCCEEEEETT------EEEEEEEEEEEEEETTT
T ss_pred             HHHHhC-CCCeEEEcCCCcccCHHHHHHHHHHhhhhccccccceEEeeeeEEEEcCC------EEEEEEEEEEEEEEcCC
Confidence            457766 43  233333357999999888753  22    1223333344 343333      122   11233433334


Q ss_pred             Cce-eeeeeEEEEEEEeC-CeEEEEceeEE
Q psy5646          70 NMK-KTGFNQNFIISAEG-ARWKIISDVFR   97 (106)
Q Consensus        70 ~~~-~~~F~qtFvL~~~~-~~y~I~nD~fR   97 (106)
                      |.+ ...+-.|.++...+ ++|+|.....-
T Consensus       105 G~~~~~~~r~T~V~~r~~~ggWkIvh~H~S  134 (145)
T 3soy_A          105 GQTQHTTGRESQVWAKIPNTGWRIVHVHYS  134 (145)
T ss_dssp             CCEEEEEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             CCeeeeEEEEEEEEEEcCCCCEEEEEEecC
Confidence            553 23456777778844 99999987754

>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}

Probab=89.28  E-value=0.65  Score=28.85  Aligned_cols=80  Identities=14%  Similarity=0.264  Sum_probs=48.4

Q ss_pred             CCCCCCceEEE--cCCccc-cHHHHHHHHHcCCCe-----eEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeee
Q psy5646           4 LYKDEDAVLSW--NGHGTK-GSQAIVKYISELPPC-----DHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTG   75 (106)
Q Consensus         4 ~Y~~~~s~l~~--nG~~~~-G~~~I~~~l~~lp~~-----~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~   75 (106)
                      -|++ ++.+.+  +|.... ..++..+ +..-|..     ..+|.++|...  +       ...+.|.  +.+   +...
T Consensus        33 ~Fhp-dA~~~~~~~g~~~~~~~~~~~~-v~~~p~~~~~~~~~~i~~I~i~g--d-------~A~a~v~--~~~---~~~~   96 (120)
T 3fka_A           33 IFFG-KASEVGHYEGELLWNSRDAFIA-MCEDAADAETDPFWAISSVSVQG--D-------IAMLHVE--NDW---AGMR   96 (120)
T ss_dssp             HEEE-EEEEEEEETTEEEEEEHHHHHH-HHHHHCCSSCCCCEEEEEEEEET--T-------EEEEEEE--EEE---TTEE
T ss_pred             hCCC-CeEEEEecCCcEEEcCHHHHHh-hcCCccCCCCCceEEEEEEEEEC--C-------EEEEEEE--EEc---CCCc
Confidence            4667 777643  343322 2344555 4433322     34577777653  2       2233333  222   2467


Q ss_pred             eeEEEEEEEeCCeEEEEceeEEee
Q psy5646          76 FNQNFIISAEGARWKIISDVFRLQ   99 (106)
Q Consensus        76 F~qtFvL~~~~~~y~I~nD~fR~~   99 (106)
                      |...|.|...+++|.|.|-+|++.
T Consensus        97 f~D~~~L~k~dg~WkIv~K~~~~~  120 (120)
T 3fka_A           97 FDDFLTVLLHEGSWRIVSKVYRIR  120 (120)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eEEEEEEEEeCCEEEEEEEEEEcC
Confidence            999999999999999999999863

>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}

Probab=88.42  E-value=3.7  Score=26.70  Aligned_cols=91  Identities=11%  Similarity=0.063  Sum_probs=53.2

Q ss_pred             CCCCCCCCceEEEcC-CccccHHHHHHHH-Hc----CCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEE--ECCc-e
Q psy5646           2 GKLYKDEDAVLSWNG-HGTKGSQAIVKYI-SE----LPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVV--YKNM-K   72 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG-~~~~G~~~I~~~l-~~----lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~--~~~~-~   72 (106)
                      ..+|.+ ++.+.+.+ ....|+++|.+.+ ..    .+.+.|.+...........      ...+.....+.  .... .
T Consensus        53 ~~lfte-Da~~~~~~~g~~~G~~~i~~~~~~~~~~~~~~t~H~i~n~~I~~~g~d------~A~~~~~~~~~~~~~~~~~  125 (176)
T 3a76_A           53 ASIWWD-DAEWTIEGIGTYKGPEGALDLANNVLWPMFHECIHYGTNLRLEFVSAD------KVNGIGDVLLLGNLVEGNQ  125 (176)
T ss_dssp             HTTEEE-EEEEEETTTEEEEHHHHHHHHHHHTHHHHEEEEEEEEEEEEEEESSSS------EEEEEEEEEEEEEETGGGE
T ss_pred             HhhccC-CeEEEcCCCccccCHHHHHHHHHHhhhcccCceEEecCCeEEEEcCCC------eEEEEEEEEEEEEecCCCc
Confidence            357888 88877654 2578999999988 54    2477888877666554311      12221111111  2222 1


Q ss_pred             eee--eeEEEEEEEeCCeEEEEceeEEee
Q psy5646          73 KTG--FNQNFIISAEGARWKIISDVFRLQ   99 (106)
Q Consensus        73 ~~~--F~qtFvL~~~~~~y~I~nD~fR~~   99 (106)
                      ...  -.-+..++..+++|+|..-.+++.
T Consensus       126 ~~~~~gry~d~l~r~dg~WrI~~r~~~~~  154 (176)
T 3a76_A          126 SILIAAVFTDEYERRDGVWKFSKRNACTN  154 (176)
T ss_dssp             EEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence            111  123445677789999999877653

>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12

Probab=85.28  E-value=4.9  Score=24.94  Aligned_cols=85  Identities=6%  Similarity=0.063  Sum_probs=53.5

Q ss_pred             CCCCCCCceEEEcCCccccHHHHHHHHHcC----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeE
Q psy5646           3 KLYKDEDAVLSWNGHGTKGSQAIVKYISEL----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQ   78 (106)
Q Consensus         3 ~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~l----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~q   78 (106)
                      +.|.+ +..++--+-...|++++.+.|.+.    |..+.++..+..-...+      .++++.-.+.=..++......+ 
T Consensus        34 a~~a~-d~~mv~p~G~~~g~~~~~~~~~~~~g~~pgl~i~i~~l~~~~~~~------d~~vv~y~~~~~~~~~~~~rrs-  105 (128)
T 1tp6_A           34 ARFAE-DFSMVTPHGVVLDKTALGELFRSKGGTRPGLRIEIDGESLLASGV------DGATLAYREIQSDAAGRSERLS-  105 (128)
T ss_dssp             TTEEE-EEEEECTTSCEEEHHHHHHHHHHHTTCSTTCEEEEEEEEEEEEET------TEEEEEEEEEEEETTEEEEEEE-
T ss_pred             HhcCC-CEEEECCCCeECCHHHHHHHHHHhhCCCCCeEEEEEEEEEEeecC------CEEEEEEEEEeccCCceeEEEE-
Confidence            56888 777765455788999998888664    45555555555533322      2556665444444554555666 


Q ss_pred             EEEEEEe-CC--eEEEEcee
Q psy5646          79 NFIISAE-GA--RWKIISDV   95 (106)
Q Consensus        79 tFvL~~~-~~--~y~I~nD~   95 (106)
                      |.+|.+. ++  .|.+.-+.
T Consensus       106 T~v~~~~~~g~~~W~~lHET  125 (128)
T 1tp6_A          106 TVVLHRDDEGRLYWRHLQET  125 (128)
T ss_dssp             EEEEEECTTCCEEEEEEEEE
T ss_pred             EEEEEeCCCCCEEEEEEEEE
Confidence            8888655 45  58877665

>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*

Probab=84.24  E-value=4.3  Score=27.52  Aligned_cols=71  Identities=13%  Similarity=0.223  Sum_probs=42.0

Q ss_pred             CCCCCCCCceEEE----cCC--ccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEE--EEECCc
Q psy5646           2 GKLYKDEDAVLSW----NGH--GTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGT--VVYKNM   71 (106)
Q Consensus         2 ~~~Y~~~~s~l~~----nG~--~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~--v~~~~~   71 (106)
                      ..||.+ ++.+.+    .|-  .+.|+++|.+++..++  --..++..+..+.+.+.     ..+++-..|.  +...|.
T Consensus        62 ~eLfAe-Dav~e~P~~~~G~P~r~~GReai~~~~~~~~~~~~d~~~~~~~v~~taDp-----d~VvvE~~~~Gtv~~TGk  135 (185)
T 3jum_A           62 HLLFTE-DGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPDWVWTDIQIFETQDP-----NWFWVECRGEGAIVFPGY  135 (185)
T ss_dssp             GGGEEE-EEEEEESCCTTSSCEEEESHHHHHHHHHHHHHHSTTCEEEEEEEECCSST-----TEEEEEEEEEEEECCTTS
T ss_pred             HHhCCC-CEEEEecCCCCCCCccccCHHHHHHHHHHHHhhCCCCeeeEEEEEEecCC-----CEEEEEEEEEEEEcCCCC
Confidence            467888 877776    343  3789999999987765  11244555666665442     2455555544  445565


Q ss_pred             eeeeeeE
Q psy5646          72 KKTGFNQ   78 (106)
Q Consensus        72 ~~~~F~q   78 (106)
                      +...|.+
T Consensus       136 p~~~Y~~  142 (185)
T 3jum_A          136 PRGQYRN  142 (185)
T ss_dssp             CCEEEEE
T ss_pred             ccceEEE
Confidence            4233444

>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}

Probab=83.94  E-value=6.2  Score=25.04  Aligned_cols=86  Identities=15%  Similarity=0.271  Sum_probs=56.2

Q ss_pred             CCCCCCCceEEEc---CCccccHHHHHHHHHcCC-C--eeEEEeEEEEEeCCcccccCceeEEE-EEEEEEEECCceeee
Q psy5646           3 KLYKDEDAVLSWN---GHGTKGSQAIVKYISELP-P--CDHELKSMDIHRLPEEAAQNQIAYLI-STSGTVVYKNMKKTG   75 (106)
Q Consensus         3 ~~Y~~~~s~l~~n---G~~~~G~~~I~~~l~~lp-~--~~h~i~s~D~q~~~~~~~~~~~~ili-~V~G~v~~~~~~~~~   75 (106)
                      ++|.+ +.. .++   ++.+.|.+++..+|..++ +  +++++.....|...+      .+++- .+.  ...++. ...
T Consensus        37 ~lyap-Dvt-~fDp~~~~~~~G~~a~r~yf~~~~~~~~~~~ei~~p~V~v~gD------~A~~~y~l~--~~~~~~-~~~  105 (134)
T 3ke7_A           37 ELSDT-DVI-YFDPSLETKIEGLEQLRTYYKGMQLPPADHFDMIRPVVQVAQN------IAVLTFNLD--SYLSDK-VIK  105 (134)
T ss_dssp             HHEEE-EEE-EECTTCSSCEESHHHHHHHHHHHCCCCCSEEEEEEEEEEEETT------EEEEEEEEE--EEETTE-EEE
T ss_pred             HhcCC-CEE-EEcCCCccccCCHHHHHHHHHhcccCCcceEEEeCCeEEEeCc------eEEEEEEEE--EeeCCC-cEE
Confidence            45666 544 233   346889999999998865 3  567777777676433      23221 111  223333 456


Q ss_pred             eeEEEEEEEe-CCeEEEEceeEEee
Q psy5646          76 FNQNFIISAE-GARWKIISDVFRLQ   99 (106)
Q Consensus        76 F~qtFvL~~~-~~~y~I~nD~fR~~   99 (106)
                      ...|++.... +++|.|.....-+.
T Consensus       106 ~r~T~V~~r~~dG~W~ivH~H~S~~  130 (134)
T 3ke7_A          106 WNCTEVYRRNPDNQWKIIQTHWSYV  130 (134)
T ss_dssp             EEEEEEEEECTTSBEEEEEEEEEES
T ss_pred             EEEEEEEEEcCCCcEEEEEEeeccc
Confidence            7899999999 89999998877664

>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28

Probab=81.74  E-value=7.5  Score=24.38  Aligned_cols=92  Identities=17%  Similarity=0.218  Sum_probs=52.2

Q ss_pred             CCCCCCCCceEEEcC-CccccHHHHHHHHHcC----CCeeEEEeEEEEEeCCc-ccccCceeEEEEEEEEEEEC-Cce-e
Q psy5646           2 GKLYKDEDAVLSWNG-HGTKGSQAIVKYISEL----PPCDHELKSMDIHRLPE-EAAQNQIAYLISTSGTVVYK-NMK-K   73 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG-~~~~G~~~I~~~l~~l----p~~~h~i~s~D~q~~~~-~~~~~~~~ili~V~G~v~~~-~~~-~   73 (106)
                      ..+|.+ ++.+.+.+ ....|+++|.+.+..+    +.+.|.+.........+ .+     .....+....... +.+ .
T Consensus        33 ~~lFt~-D~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~n~~I~~~gdd~A-----~~~~~~~~~~~~~~~~~~~  106 (150)
T 3ef8_A           33 AALFVE-DCEVSYAPNFGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDFVSETEA-----NVRSVVLAIHRYTKERPDG  106 (150)
T ss_dssp             HTTEEE-EEEEEEETTEEEESHHHHHHHTTTHHHHEEEEEEEEEEEEEEEEETTEE-----EEEEEEEEEEEESSSSCCE
T ss_pred             HhhccC-ceEEEccCCCCCCCHHHHHHHHHHhhcccCceEEecCCEEEEEcCCCEE-----EEEEEEEEEEEccCCCCeE
Confidence            357888 88877644 3578999999988775    36788888766655432 11     1111111111112 221 1


Q ss_pred             eee-eEEEEEEEeCCeEEEEceeEEee
Q psy5646          74 TGF-NQNFIISAEGARWKIISDVFRLQ   99 (106)
Q Consensus        74 ~~F-~qtFvL~~~~~~y~I~nD~fR~~   99 (106)
                      ... -....++..+++|+|..=.+++.
T Consensus       107 ~~~gry~d~~~r~dg~Wri~~r~~~~d  133 (150)
T 3ef8_A          107 ILYGQYFDTVVKVDGQWKFKRRELRTT  133 (150)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEEECCEEEEEEEEEEec
Confidence            110 12334556789999998877553

>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}

Probab=80.16  E-value=7.2  Score=23.17  Aligned_cols=68  Identities=12%  Similarity=0.168  Sum_probs=39.7

Q ss_pred             CCCCCCceEEEcCC-ccccHHHHHHHHHcCC----CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEE---CCc-eee
Q psy5646           4 LYKDEDAVLSWNGH-GTKGSQAIVKYISELP----PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVY---KNM-KKT   74 (106)
Q Consensus         4 ~Y~~~~s~l~~nG~-~~~G~~~I~~~l~~lp----~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~---~~~-~~~   74 (106)
                      ++.+ +..-...|. +..|++++.+.+..+.    ..++++..+=++   +       . .+.|.|.+..   +|. ...
T Consensus        24 ~lad-Dv~w~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~i~~---G-------d-~Vvv~~~~~~~~~~g~~~~~   91 (112)
T 3f14_A           24 CFND-IIEWNIIGNQVVKGKADVIDFCNKMLPEMKGAVLTNDNVIQN---E-------N-QIVIEGKCRYFDAEGKEAFV   91 (112)
T ss_dssp             GEEE-EEEEEETTTEEEESHHHHHHHHHHHHHHHHTSEEEEEEEEEC---S-------S-EEEEEEEEEEECTTSCEEEE
T ss_pred             hcCC-ceEEEEcCCccEecHHHHHHHHHHHHhhcCCcEEEEEEEEEe---C-------C-EEEEEEEEEEEeCCCCEEEE
Confidence            4444 433222444 5889999999887765    356666653322   1       1 4555565553   233 356


Q ss_pred             eeeEEEEEE
Q psy5646          75 GFNQNFIIS   83 (106)
Q Consensus        75 ~F~qtFvL~   83 (106)
                      .|+..|-+.
T Consensus        92 ~~~~vf~~~  100 (112)
T 3f14_A           92 SYCDIYRFE  100 (112)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            788888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d1jkga_	139	d.17.4.2 (A:) NTF2-related export protein 1 (p15)	1e-24
d1gy7a_	121	d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {B	4e-18
d1gy6a_	125	d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {R	1e-17
d1zo2a1	117	d.17.4.2 (A:10-126) Nuclear transport factor-2 (NT	2e-16
d2qiya1	139	d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {B	2e-12
d1of5b_	165	d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker	1e-07

>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human (Homo sapiens) [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: NTF2-related export protein 1 (p15)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.4 bits (219), Expect = 1e-24
 Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 5/103 (4%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
           + +LY    A L WNG+   G +++ ++   LP  + ++  +D   + +EA  +Q   L+
Sbjct: 34  LSRLYMG-TATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLV 92

Query: 61  STSGTVVYKNMKKTGFNQNFIISAEGA----RWKIISDVFRLQ 99
              G+V ++  K+  FNQNFI++A+ +     WKI SD FR Q
Sbjct: 93  VICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQ 135

>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 121

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (174), Expect = 4e-18
 Identities = 21/101 (20%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAY 58
           +G LY++ +++L++     +G++ IV+ +  LP     H + ++D       +    +  
Sbjct: 24  LGNLYRN-ESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQ---PASPYGDV-- 77

Query: 59  LISTSGTVVYKNMKKT-GFNQNFIISAEGARWKIISDVFRL 98
           L+  +G ++    +    F+Q F +  +G  + + +D+FRL
Sbjct: 78  LVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRL 118

>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 125

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.9 bits (171), Expect = 1e-17
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAY 58
           +G +Y  + + L+W G   +G  AIV+ +S LP     H + + D    P+         
Sbjct: 27  LGAIY-IDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSC------I 79

Query: 59  LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL 98
           +    G +        GF+Q F++      W   +D+FRL
Sbjct: 80  ISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 119

>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]} Length = 117

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Cryptosporidium parvum [TaxId: 5807]

 Score = 66.8 bits (163), Expect = 2e-16
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 1   MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAY 58
           +G LY    ++L+W     +G   IV   + L       E+  +D    P          
Sbjct: 23  LGGLYGP-QSMLTWEDTQFQGQANIVNKFNSLNFQRVQFEITRVDCQPSPNN------GS 75

Query: 59  LISTSGTVVYKNMKKTGFNQNFIISAEGAR-WKIISDVFRL 98
           ++  +G V   + +   F+Q F +   G   + I +D+FRL
Sbjct: 76  IVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDLFRL 116

>d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 139

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: UBP3-associated protein BRE5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.4 bits (138), Expect = 2e-12
 Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 18/115 (15%)

Query: 1   MGKLYKDEDAVLSWNG---------------HGTKGSQAIVKYISELPPCDHELKSMDIH 45
           +   Y    A L+                      G + I K+ S        LK     
Sbjct: 25  LAYFYAST-AELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKLDT 83

Query: 46  RLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAE--GARWKIISDVFRL 98
              +       + LI  +G + +       F Q FI+     G+ + I +D+ R 
Sbjct: 84  IDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITNDIIRF 138

>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: mRNA transport regulator MTR2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 8/67 (11%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 3  KLYKDEDAVLSWNGHGTKGSQAIV-KYISELPPCDHELKSMDIHRLPEEAAQNQIAYLIS 61
          +L+   +  + +N      +   +  + +++    H L  +D H +P          + +
Sbjct: 30 QLFNPNNCRIIFNATPFAQATVFLQMWQNQVVQTQHALTGVDYHAIP-----GSGTLICN 84

Query: 62 TSGTVVY 68
           +  V +
Sbjct: 85 VNCKVRF 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1jkga_	139	NTF2-related export protein 1 (p15) {Human (Homo s	100.0
d1gy6a_	125	Nuclear transport factor-2 (NTF2) {Rat (Rattus nor	100.0
d1gy7a_	121	Nuclear transport factor-2 (NTF2) {Baker's yeast (	100.0
d1zo2a1	117	Nuclear transport factor-2 (NTF2) {Cryptosporidium	100.0
d2qiya1	139	UBP3-associated protein BRE5 {Baker's yeast (Sacch	99.95
d1of5b_	165	mRNA transport regulator MTR2 {Baker's yeast (Sacc	99.73
d1q40b_	205	NTF2-like domain of mRNA export factor MEX67 {Yeas	99.6
d1of5a_	221	NTF2-like domain of mRNA export factor MEX67 {Bake	99.57
d1jkgb_	186	NTF2-like domain of Tip associating protein, TAP {	99.48
d1q42a_	174	mRNA transport regulator MTR2 {Yeast (Candida albi	99.46
d3b7ca1	121	Uncharacterized protein SO0125 {Shewanella oneiden	97.45
d2owpa1	128	Hypothetical protein BxeB1374 {Burkholderia xenovo	97.19
d3cu3a1	162	Uncharacterized protein NpunR1993 {Nostoc punctifo	96.72
d2gxfa1	128	Hypothetical protein YybH {Bacillus subtilis [TaxI	96.71
d2rcda1	127	Uncharacterized protein ECA3500 {Pectobacterium at	96.56
d3d9ra1	132	Uncharacterized protein ECA1476 {Pectobacterium at	96.41
d1m98a2	142	Orange carotenoid protein, C-terminal domain {Cyan	95.96
d3bb9a1	121	Uncharacterized protein Sfri1973 {Shewanella frigi	95.89
d2r4ia1	122	Uncharacterized protein CHU142 {Cytophaga hutchins	95.58
d2f86b1	129	Association domain of calcium/calmodulin-dependent	94.9
d2rgqa1	133	Uncharacterized protein NpunR3134 {Nostoc punctifo	94.81
d2chca1	167	Uncharacterized protein Rv3472 {Mycobacterium tube	94.15
d2ux0a1	135	Association domain of calcium/calmodulin-dependent	94.02
d3cnxa1	153	Uncharacterized protein SAV4671 {Streptomyces aver	92.37
d2rfra1	153	Uncharacterized protein Saro3722 {Novosphingobium	91.82
d3blza1	124	Uncharacterized protein Sbal0622 {Shewanella balti	84.61
d3er7a1	118	Uncharacterized protein Exig0174 {Exiguobacterium	84.61
d3en8a1	127	Uncharacterized protein BxeB2092 {Burkholderia xen	81.56
d1s5aa_	139	Hypothetical protein YesE {Bacillus subtilis [TaxI	80.43

>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: NTF2-related export protein 1 (p15)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-36  Score=198.65  Aligned_cols=102  Identities=32%  Similarity=0.661  Sum_probs=95.4

Q ss_pred             CCCCCCCCCceEEEcCCccccHHHHHHHHHcCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeEEE
Q psy5646           1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNF   80 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~qtF   80 (106)
                      |++||.+ +|.|+|||+++.|+++|.+++++||.++|++.++||||+++...+..++|||+|+|.++.+++++|+|+|+|
T Consensus        34 L~~fY~~-~S~l~~~g~~~~G~~~I~~~l~~lp~~~~~i~~~D~q~~~~~~~~~~~~ilI~V~G~v~~~~~~~r~F~QtF  112 (139)
T d1jkga_          34 LSRLYMG-TATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNF  112 (139)
T ss_dssp             GGGGEEE-EEEEEETTEEEESHHHHHHHHHHSCCEEEEEEEEEEEECCTTTSTTCCEEEEEEEEEEEETTSCCEEEEEEE
T ss_pred             HHHHhCC-CceEEECCeeccCHHHHHHHHHhCCCceeEEEEEEEEEcCcccccCCCeEEEEEEEEEEcCCCCcceeEEEE
Confidence            6789999 999999999999999999999999999999999999999987666667999999999999999999999999


Q ss_pred             EEEEeC----CeEEEEceeEEeeecCC
Q psy5646          81 IISAEG----ARWKIISDVFRLQQTPV  103 (106)
Q Consensus        81 vL~~~~----~~y~I~nD~fR~~~~~~  103 (106)
                      +|+|++    ++|+|.||+|||+|+++
T Consensus       113 ~L~~~~~~~~~~y~I~nD~fR~vd~~~  139 (139)
T d1jkga_         113 ILTAQASPSNTVWKIASDCFRFQDWAS  139 (139)
T ss_dssp             EEEEECCSSSCEEEEEEEEEEETTTTC
T ss_pred             EEEecCCCCCCcEEEEeeEEEEEeccC
Confidence            999974    57999999999999975

>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.3e-34  Score=185.75  Aligned_cols=95  Identities=27%  Similarity=0.539  Sum_probs=90.2

Q ss_pred             CCCCCCCCCceEEEcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeE
Q psy5646           1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQ   78 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~q   78 (106)
                      |++||.+ +|.|+|+|+.+.|+++|.++|++||  .++|+|.++||||+.+      ++|+|+|+|.++.+++++|+|+|
T Consensus        27 L~~~Y~~-~S~l~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~~~D~Q~~~~------~~ili~V~G~~~~~~~~~~~F~q   99 (125)
T d1gy6a_          27 LGAIYID-ASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPD------SCIISMVVGQLKADEDPIMGFHQ   99 (125)
T ss_dssp             GGGGEEE-EEEEEETTEEEESHHHHHHHHHHCSCSCEEEEEEEEEEEECTT------SCEEEEEEEEEEETTSCCEEEEE
T ss_pred             HHHHcCC-CcEEEECCccccCHHHHHHHHHcCCCcccEEEEeEEEEEEcCC------CCEEEEEEEEEEECCCCCcceEE
Confidence            6899999 9999999999999999999999999  6789999999999988      58999999999999999999999


Q ss_pred             EEEEEEeCCeEEEEceeEEeeecC
Q psy5646          79 NFIISAEGARWKIISDVFRLQQTP  102 (106)
Q Consensus        79 tFvL~~~~~~y~I~nD~fR~~~~~  102 (106)
                      +|+|++++++|+|.||+|||+...
T Consensus       100 tF~L~~~~~~y~I~NDiFR~v~~~  123 (125)
T d1gy6a_         100 MFLLKNINDAWVCTNDMFRLALHN  123 (125)
T ss_dssp             EEEEEEETTEEEEEEEEEEECCCC
T ss_pred             EEEEeccCCEEEEEeeEEEEEecc
Confidence            999999999999999999998753

>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-33  Score=182.58  Aligned_cols=94  Identities=22%  Similarity=0.515  Sum_probs=87.4

Q ss_pred             CCCCCCCCCceEEEcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc-eeeeee
Q psy5646           1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM-KKTGFN   77 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~-~~~~F~   77 (106)
                      |++||.+ +|.|+|||+++.|+++|.++|++||  +++|+|.++||||+..+     ++|||+|+|.++.+++ ++|+|+
T Consensus        24 L~~~Y~~-~s~l~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~~~D~Qp~~~~-----~~ili~V~G~~~~~~~~~~~~F~   97 (121)
T d1gy7a_          24 LGNLYRN-ESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPY-----GDVLVMITGDLLIDEEQNPQRFS   97 (121)
T ss_dssp             GGGGEEE-EEEEEETTEEEESHHHHHHHHHHSCCSCEEEEEEEEEEEESSTT-----SCEEEEEEEEEEETTCSSCEEEE
T ss_pred             HHHHcCC-CcEEEECCeEecCHHHHHHHHHhCCCcccEEEEeeEeeEEccCC-----CeEEEEEEEEEEECCCCCcceeE
Confidence            6799999 9999999999999999999999999  78999999999998653     5899999999998765 589999


Q ss_pred             EEEEEEEeCCeEEEEceeEEeee
Q psy5646          78 QNFIISAEGARWKIISDVFRLQQ  100 (106)
Q Consensus        78 qtFvL~~~~~~y~I~nD~fR~~~  100 (106)
                      |+|+|+|++++|+|.||+||++.
T Consensus        98 qtF~L~~~~~~y~I~nD~FRl~~  120 (121)
T d1gy7a_          98 QVFHLIPDGNSYYVFNDIFRLNY  120 (121)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEeeCCEEEEEEEEEEEec
Confidence            99999999999999999999984

>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: Nuclear transport factor-2 (NTF2)
species: Cryptosporidium parvum [TaxId: 5807]

Probab=100.00  E-value=6.6e-33  Score=178.77  Aligned_cols=91  Identities=25%  Similarity=0.487  Sum_probs=86.6

Q ss_pred             CCCCCCCCCceEEEcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeE
Q psy5646           1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQ   78 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~q   78 (106)
                      |++||.+ +|.++|+|+++.|+++|.+++++||  .++|+|.++||||+++      ++|||+|+|.++.+++++|+|+|
T Consensus        23 l~~~Y~~-~s~l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~~~D~Qp~~~------~~ili~V~G~~~~~~~~~~~F~q   95 (117)
T d1zo2a1          23 LGGLYGP-QSMLTWEDTQFQGQANIVNKFNSLNFQRVQFEITRVDCQPSPN------NGSIVFVTGDVRIDDGQPLKFSQ   95 (117)
T ss_dssp             GGGGEEE-EEEEEETTEEEESHHHHHHHHHHHCCSCEEEEEEEEEEEECTB------SSEEEEEEEEEEETTCCCEEEEE
T ss_pred             HHhhccC-CcEEEECCCcccCHHHHHHHHHhCCCccceEEEeeEEEEEcCC------CCEEEEEEEEEEeCCCCcceeEE
Confidence            6789999 9999999999999999999999999  7899999999999987      58999999999999999999999


Q ss_pred             EEEEEEeC-CeEEEEceeEEe
Q psy5646          79 NFIISAEG-ARWKIISDVFRL   98 (106)
Q Consensus        79 tFvL~~~~-~~y~I~nD~fR~   98 (106)
                      +|+|+|++ ++|+|.||+||+
T Consensus        96 ~F~L~~~~~~~~~I~nD~FRl  116 (117)
T d1zo2a1          96 VFNLMPSGNGGFMIFNDLFRL  116 (117)
T ss_dssp             EEEEEECSSSCEEEEEEEEEE
T ss_pred             EEEEeEcCCCCEEEEeEEeec
Confidence            99999976 689999999997

>d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: UBP3-associated protein BRE5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.1e-28  Score=160.01  Aligned_cols=94  Identities=20%  Similarity=0.341  Sum_probs=84.5

Q ss_pred             CCCCCCCCCceEEEcCC---------------ccccHHHHHHHHHcCC----CeeEEEeEEEEEeCCcccccCceeEEEE
Q psy5646           1 MGKLYKDEDAVLSWNGH---------------GTKGSQAIVKYISELP----PCDHELKSMDIHRLPEEAAQNQIAYLIS   61 (106)
Q Consensus         1 l~~~Y~~~~s~l~~nG~---------------~~~G~~~I~~~l~~lp----~~~h~i~s~D~q~~~~~~~~~~~~ili~   61 (106)
                      |++||++ +|.++|+|.               .+.|+++|.+++.+||    .++|++.++|+|+++...    ++|+|+
T Consensus        25 L~~~Y~~-~s~~s~~~~~~~~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~~~i~~~d~~~~~~~~----~~i~v~   99 (139)
T d2qiya1          25 LAYFYAS-TAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKLDTIDFQYTGHLH----KSILIM   99 (139)
T ss_dssp             GGGGEEE-EEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEEEEEEEEEEEESGGG----CEEEEE
T ss_pred             HHHhhcC-CcEEEEcCCCcccccccchhhhhhccccHHHHHHHHHhcCccccceEEeeeeeeeeecccCC----CEEEEE
Confidence            6789999 999999984               4579999999999998    789999999999987532    589999


Q ss_pred             EEEEEEECCceeeeeeEEEEEEEeC--CeEEEEceeEEee
Q psy5646          62 TSGTVVYKNMKKTGFNQNFIISAEG--ARWKIISDVFRLQ   99 (106)
Q Consensus        62 V~G~v~~~~~~~~~F~qtFvL~~~~--~~y~I~nD~fR~~   99 (106)
                      |+|.++.+++++|.|+|+|+|+|++  ++|+|.||+|||+
T Consensus       100 V~G~~~~~~~~~r~F~qtFvL~p~~~~~~~~I~nDifR~v  139 (139)
T d2qiya1         100 ATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITNDIIRFI  139 (139)
T ss_dssp             EEEEEEETTCCCEEEEEEEEEEECC---CEEEEEEEEEEE
T ss_pred             EeeEEecCCCCccceEEEEEEEecCCCCEEEEEeeEEEeC
Confidence            9999999999999999999999976  5699999999996

>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: mRNA transport regulator MTR2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=6.8e-18  Score=112.82  Aligned_cols=76  Identities=12%  Similarity=0.291  Sum_probs=54.3

Q ss_pred             CCCCCCCCceEEEcCCccccHHHHHH-HHHcCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeEEE
Q psy5646           2 GKLYKDEDAVLSWNGHGTKGSQAIVK-YISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNF   80 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~-~l~~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~qtF   80 (106)
                      ..||.++.|.|+|||+++.|..++.+ ++.++|.++|+|+++||||++++     ++++|.|+|+|++|+..+-+--|.+
T Consensus        29 ~~ly~p~~S~Iv~NGnpvag~~~~lekf~~~lP~T~H~l~s~DcqpIpG~-----gT~vi~~sgkVrfDesgr~k~G~~~  103 (165)
T d1of5b_          29 VQLFNPNNCRIIFNATPFAQATVFLQMWQNQVVQTQHALTGVDYHAIPGS-----GTLICNVNCKVRFDESGRDKMGQDA  103 (165)
T ss_dssp             HTTBCSS-CCEEETTEEESCHHHHHHHHHHHSCCCEEEEEEEEEEEETTT-----TEEEEEEEEEEECC-----------
T ss_pred             HhhcCCCCceEEECCCCcCcHHHHHHHHHhcCCCeeEEEEEEeeeEcCCC-----cEEEEEEeeEEEECCCCCCCCCCcc
Confidence            35677647899999999999988665 55679999999999999999875     7999999999999977555555666


Q ss_pred             EE
Q psy5646          81 II   82 (106)
Q Consensus        81 vL   82 (106)
                      .|
T Consensus       104 ~~  105 (165)
T d1of5b_         104 TV  105 (165)
T ss_dssp             --
T ss_pred             cc
Confidence            66

>d1q40b_ d.17.4.2 (B:) NTF2-like domain of mRNA export factor MEX67 {Yeast (Candida albicans) [TaxId: 5476]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: NTF2-like domain of mRNA export factor MEX67
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=99.60  E-value=1.9e-15  Score=104.79  Aligned_cols=80  Identities=20%  Similarity=0.372  Sum_probs=66.0

Q ss_pred             cccHHHHHHHHHcCCCeeEEEe------EEEEEeCCcccccCceeEEEEEEEEEEECCc---------------------
Q psy5646          19 TKGSQAIVKYISELPPCDHELK------SMDIHRLPEEAAQNQIAYLISTSGTVVYKNM---------------------   71 (106)
Q Consensus        19 ~~G~~~I~~~l~~lp~~~h~i~------s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~---------------------   71 (106)
                      ..|+++|.+.|.+||+++|++.      ++||.+.+..     ++++|+|+|.++--+.                     
T Consensus        82 ~~G~~~Iv~~l~~LPkT~Hdl~s~~~~f~vD~~~~~~~-----~~l~itVhG~F~E~~~~~~~~~~~~~~~~~~~~~~~~  156 (205)
T d1q40b_          82 SIGQEQIYKSFQQLPKTRHDIIATPELFSMEVYKFPTL-----NGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYH  156 (205)
T ss_dssp             EEHHHHHHHHHHTSCEEECCTTTCGGGCEEEEEECSST-----TCEEEEEEEEEEEEECCSSCCCC----------CCSS
T ss_pred             hhCHHHHHHHHHHCCCCcccccCCCceEEEEeEecCCC-----CEEEEEEEeEEEeccCccccccccccccccccccccc
Confidence            4699999999999999999873      7899988764     4899999999984211                     


Q ss_pred             ----------eeeeeeEEEEEEEeC-CeEEEEceeEEeeecCC
Q psy5646          72 ----------KKTGFNQNFIISAEG-ARWKIISDVFRLQQTPV  103 (106)
Q Consensus        72 ----------~~~~F~qtFvL~~~~-~~y~I~nD~fR~~~~~~  103 (106)
                                ..|.|++||+|+|.+ ++++|.||++.+..+..
T Consensus       157 ~~~~~~~~~~~~RsF~RTFil~P~~~g~~~I~nD~L~IR~~~~  199 (205)
T d1q40b_         157 SGPKHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPYTS  199 (205)
T ss_dssp             SSSCCCCCCCCCEEEEEEEEEECC---CCEEEEEEEEEEECCS
T ss_pred             cccccccccccccceeEEEEEEecCCCcEEEEcCeEEEecCCC
Confidence                      268999999999976 78999999999998754

>d1of5a_ d.17.4.2 (A:) NTF2-like domain of mRNA export factor MEX67 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: NTF2-like domain of mRNA export factor MEX67
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=1.4e-14  Score=101.24  Aligned_cols=80  Identities=21%  Similarity=0.368  Sum_probs=68.1

Q ss_pred             cccHHHHHHHHHcCCCeeEEEe------EEEEEeCCcccccCceeEEEEEEEEEEECCc---------------------
Q psy5646          19 TKGSQAIVKYISELPPCDHELK------SMDIHRLPEEAAQNQIAYLISTSGTVVYKNM---------------------   71 (106)
Q Consensus        19 ~~G~~~I~~~l~~lp~~~h~i~------s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~---------------------   71 (106)
                      ..|+++|.+.|++||+++|++.      ++||.+.+..     ++++|+|+|.++--+.                     
T Consensus        88 ~~G~~~Iv~~l~~LPkT~Hdl~~~p~~f~vd~~~~~~~-----~~l~itvhG~F~E~~~~~~~~~~~~~~~~~~~~~~~~  162 (221)
T d1of5a_          88 SIGQESINSIFKTLPKTKHHLQEQPNEYSMETISYPQI-----NGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYN  162 (221)
T ss_dssp             CBHHHHHHHHHHHSCCEEECTTTSGGGCEEEEEEEGGG-----TEEEEEEEEEEEEC-----------------------
T ss_pred             hhCHHHHHHHHHHCCCccccccCCCceEEEEEEEcCCC-----CEEEEEEeEEEEeccCccccccccccccccccccccc
Confidence            3699999999999999999974      6999888764     5899999999996321                     


Q ss_pred             -----------eeeeeeEEEEEEEeCCeEEEEceeEEeeecCC
Q psy5646          72 -----------KKTGFNQNFIISAEGARWKIISDVFRLQQTPV  103 (106)
Q Consensus        72 -----------~~~~F~qtFvL~~~~~~y~I~nD~fR~~~~~~  103 (106)
                                 ..|.|.+||+|+|.+++++|.||++-+..+..
T Consensus       163 ~~~~~~~~~~~~~RsFdRTFil~P~~~g~~I~nD~L~iR~~~~  205 (221)
T d1of5a_         163 HGYNSTSNNKLSKKSFDRTWVIVPMNNSVIIASDLLTVRAYST  205 (221)
T ss_dssp             ------CCSCCEEEEEEEEEEEEEETTEEEEEEEEEEEEECCC
T ss_pred             ccccccccccccccceeEEEEEecCCCcEEEEeCeEEEecCCC
Confidence                       36899999999999899999999999987643

>d1jkgb_ d.17.4.2 (B:) NTF2-like domain of Tip associating protein, TAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: NTF2-like domain of Tip associating protein, TAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-13  Score=94.53  Aligned_cols=79  Identities=16%  Similarity=0.298  Sum_probs=64.5

Q ss_pred             cccHHHHHHHHHcCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc----eeeeeeEEEEEEEeC-CeEEEEc
Q psy5646          19 TKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM----KKTGFNQNFIISAEG-ARWKIIS   93 (106)
Q Consensus        19 ~~G~~~I~~~l~~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~----~~~~F~qtFvL~~~~-~~y~I~n   93 (106)
                      ..|+++|.+.|++||+++|++.++-...+....    ..++|+|+|.++....    ..|.|++||+|+|.+ ++|+|.|
T Consensus        87 ~~G~~~Iv~~l~~LP~T~Hd~~sf~vD~~~~~~----~~l~itV~G~F~E~~~~~~~~~rsF~RTFil~P~~~~~~~I~n  162 (186)
T d1jkgb_          87 KHTRLNVVAFLNELPKTQHDVNSFVVDISAQTS----TLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVN  162 (186)
T ss_dssp             EESHHHHHHHHTTSCCEEECGGGCEEEEEEECS----SCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEE
T ss_pred             hhCHHHHHHHHHHCCCceecccccceeEeeccC----CEEEEEEeeEEEecCCCCCcceeEEEEEEEEeecCCCceEEEe
Confidence            359999999999999999999875554443321    4799999999996421    479999999999976 7899999


Q ss_pred             eeEEeeec
Q psy5646          94 DVFRLQQT  101 (106)
Q Consensus        94 D~fR~~~~  101 (106)
                      |++.+..+
T Consensus       163 D~L~Ir~~  170 (186)
T d1jkgb_         163 DELFVRNA  170 (186)
T ss_dssp             EEEEEEEC
T ss_pred             cEEEEECC
Confidence            99998764

>d1q42a_ d.17.4.2 (A:) mRNA transport regulator MTR2 {Yeast (Candida albicans) [TaxId: 5476]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: NTF2-like
domain: mRNA transport regulator MTR2
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=99.46  E-value=9.8e-14  Score=92.33  Aligned_cols=90  Identities=19%  Similarity=0.214  Sum_probs=70.1

Q ss_pred             CceEEEcCCcc------ccHHHHHHHHHcCCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeeeEEEEE
Q psy5646           9 DAVLSWNGHGT------KGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNFII   82 (106)
Q Consensus         9 ~s~l~~nG~~~------~G~~~I~~~l~~lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~qtFvL   82 (106)
                      ++.|+|||+++      .++.+..++|.++|.++|.++++|||+++++     ++++|+|+|.|++|+..+-+..|.+.|
T Consensus        47 ~~kII~NgtP~~~~~~~~~~~~Fl~~w~qvp~TqH~Lts~D~H~IPGt-----gt~i~nv~~KVRFDEsGrdk~Gq~a~l  121 (174)
T d1q42a_          47 SSAIIVNGQPIIPSPQEDCKLQFQKKWLQTPLSSHQLTSYDGHLIPGT-----GTFVVHFSAKVRFDQSGRNRLGESADL  121 (174)
T ss_dssp             EEEEEETTEECCCCSSCCHHHHHHHHHHTSCCEEEEEEEEEEEEETTT-----TEEEEEEEEEEEEBCSSCCTTSCCC--
T ss_pred             CcEEEEcCcccccccccccHHHHHHHHHhccceeeeeeeeeeeeeCCC-----ceEEEEeeeEEEecCcCCCcCCCccee
Confidence            78899999986      3688899999999999999999999999986     699999999999997644344444444


Q ss_pred             EEe---------------------------C----CeEEEEceeEEeeecCC
Q psy5646          83 SAE---------------------------G----ARWKIISDVFRLQQTPV  103 (106)
Q Consensus        83 ~~~---------------------------~----~~y~I~nD~fR~~~~~~  103 (106)
                      .+.                           +    +...|.+=.+|+++-|+
T Consensus       122 ~~~~~~~~~~~~~Rp~Wg~yfG~sLqlvvDerv~~~~~vIsSfNYr~vykPe  173 (174)
T d1q42a_         122 FQENNSIVSKTNQRPIWGSWFGVDVNLVVDENVMQDGEIINSMDYRFTYVPN  173 (174)
T ss_dssp             -------------CCCBCCCEEEEEEEEEESCCSSCSSCEEEEEEEEEECCC
T ss_pred             ecCCCCCCCCCCCCcccccccceEEEEEeecccccCCceEEeeeeEEEeCCC
Confidence            321                           1    34458888889888776

>d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SO0125-like
domain: Uncharacterized protein SO0125
species: Shewanella oneidensis [TaxId: 70863]

Probab=97.45  E-value=0.001  Score=39.59  Aligned_cols=86  Identities=17%  Similarity=0.172  Sum_probs=54.7

Q ss_pred             CCCCCCCCceEEE--cCCccccHHHHHHHHHcC-C----CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc-ee
Q psy5646           2 GKLYKDEDAVLSW--NGHGTKGSQAIVKYISEL-P----PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM-KK   73 (106)
Q Consensus         2 ~~~Y~~~~s~l~~--nG~~~~G~~~I~~~l~~l-p----~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~-~~   73 (106)
                      .++|.+ +..+++  .|....|.++|.+.+... +    .++..+...+.....+.      ..+  +.|....++. ..
T Consensus        26 ~~~~~~-d~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d------~a~--~~~~~~~~~~~~~   96 (121)
T d3b7ca1          26 MQGYWQ-NEQLMLISNGKFRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLSNY------AAM--VVGRWDLKRLKDT   96 (121)
T ss_dssp             HTTBCC-STTCEEECSSCEEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEEETT------EEE--EEEEEEEECSSCC
T ss_pred             HHHHhc-cCcceEecCCcceecHHHHHHHHHHhhcccccccEEEEeeEEEEEcCCC------EEE--EEEEEEEcccCCC
Confidence            368888 776654  467889999999987553 2    44555555555544432      333  3444444332 12


Q ss_pred             eeeeEEEEEEEeCCeEEEEceeE
Q psy5646          74 TGFNQNFIISAEGARWKIISDVF   96 (106)
Q Consensus        74 ~~F~qtFvL~~~~~~y~I~nD~f   96 (106)
                      ...-.|++++..+++|+|..+.+
T Consensus        97 ~~~r~T~v~~k~~g~WkIv~~H~  119 (121)
T d3b7ca1          97 PTGVFTLLVEKIDDRWVITMDHS  119 (121)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEE
T ss_pred             cceEEEEEEEEECCEEEEEEEee
Confidence            23345899999999999998765

>d2owpa1 d.17.4.18 (A:1-128) Hypothetical protein BxeB1374 {Burkholderia xenovorans [TaxId: 36873]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BxeB1374-like
domain: Hypothetical protein BxeB1374
species: Burkholderia xenovorans [TaxId: 36873]

Probab=97.19  E-value=0.0024  Score=38.74  Aligned_cols=92  Identities=14%  Similarity=0.120  Sum_probs=58.1

Q ss_pred             CCCCCCCCceEEE--cCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceee-ee
Q psy5646           2 GKLYKDEDAVLSW--NGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKT-GF   76 (106)
Q Consensus         2 ~~~Y~~~~s~l~~--nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~-~F   76 (106)
                      .++|.+ ++.+.+  .|....|.++|.+.+....  .....+...+.+...+      ...+  +++....++.+.. ++
T Consensus        32 ~~l~a~-d~~~v~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~i~~~g~------d~A~--~~~~~~~~~~~~~Gr~  102 (128)
T d2owpa1          32 NALFWH-TPETVRYGIAEVQHGGEAIRAWRERCEPVPKSRKLHRTVVTTFGT------DFAT--VSTEFTSDATPLLGRQ  102 (128)
T ss_dssp             HHTBCC-STTCEEECSSCEEESHHHHHHHHHHSCCCCTTCEEEEEEEEEETT------TEEE--EEEEEEETTEEEEEEE
T ss_pred             HHHhcc-CCcEEEeeccceecchhHHHHHHHHhhccCcccccceeEEEEeeC------ceEE--EEEEEEEccCCcceeE
Confidence            357877 655443  3456789999999998875  2223444444554433      1223  5556667776443 56


Q ss_pred             eEEEEEEEeCCeEEEEceeEEeeecC
Q psy5646          77 NQNFIISAEGARWKIISDVFRLQQTP  102 (106)
Q Consensus        77 ~qtFvL~~~~~~y~I~nD~fR~~~~~  102 (106)
                      +++|+..+.+++|+|..+.+-....|
T Consensus       103 t~v~~r~~~~~gWrIv~~H~S~~~~p  128 (128)
T d2owpa1         103 MQTWARLSPADGWKIVAAHVSLIAMP  128 (128)
T ss_dssp             EEEEEECSTTTCEEEEEEEEEEECCC
T ss_pred             EEEEEEcCCCCCEEEEEEeecCCCCC
Confidence            66666656668999999988776543

>d3cu3a1 d.17.4.28 (A:9-170) Uncharacterized protein NpunR1993 {Nostoc punctiforme [TaxId: 272131]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein NpunR1993
species: Nostoc punctiforme [TaxId: 272131]

Probab=96.72  E-value=0.0034  Score=39.59  Aligned_cols=86  Identities=12%  Similarity=0.115  Sum_probs=57.2

Q ss_pred             CCCCCCCCceEEE-cCCccccHHHHHHHHHcC----C-CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCc----
Q psy5646           2 GKLYKDEDAVLSW-NGHGTKGSQAIVKYISEL----P-PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNM----   71 (106)
Q Consensus         2 ~~~Y~~~~s~l~~-nG~~~~G~~~I~~~l~~l----p-~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~----   71 (106)
                      ..+|.+ ++.+.. .|....|+++|.+.+...    + ...+.+...+.+.+.++      ..++.....+...+.    
T Consensus        29 ~~l~a~-D~~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~d------~Avv~~~~~~~~~~~~~~~  101 (162)
T d3cu3a1          29 AAPFSE-TADFITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNSQ------LALMLVVIRVILPGQTETS  101 (162)
T ss_dssp             HTTEEE-EEEEECTTCCEEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETT------EEEEEEEEEEECTTCSSBC
T ss_pred             HHhhcc-CeeeecccccccCCHHHHHHHHHHHHhhcccceeEEeeceEEEEecCC------EEEEEEEEEEeecCCCCCC
Confidence            357888 776543 355788999999887653    2 45566666666655442      445555555554432    


Q ss_pred             eeeeeeEEEEEEEeCCeEEEEce
Q psy5646          72 KKTGFNQNFIISAEGARWKIISD   94 (106)
Q Consensus        72 ~~~~F~qtFvL~~~~~~y~I~nD   94 (106)
                      +.+....+++|.+.+++|+|.+.
T Consensus       102 ~~~~~r~t~Vl~K~dG~WrIa~~  124 (162)
T d3cu3a1         102 ASRDSLPLYVVTKGDEGWQIEGL  124 (162)
T ss_dssp             GGGCBCCEEEEEEETTEEEEEEE
T ss_pred             cceeEEEEEEEEEECCEEEEEEE
Confidence            34556789999999999999854

>d2gxfa1 d.17.4.22 (A:1-128) Hypothetical protein YybH {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: YybH-like
domain: Hypothetical protein YybH
species: Bacillus subtilis [TaxId: 1423]

Probab=96.71  E-value=0.0049  Score=37.11  Aligned_cols=84  Identities=15%  Similarity=0.213  Sum_probs=49.7

Q ss_pred             CCCCCCCCceEEE-cCCccccHHHHHHHHHcCC-----CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEEC----Cc
Q psy5646           2 GKLYKDEDAVLSW-NGHGTKGSQAIVKYISELP-----PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK----NM   71 (106)
Q Consensus         2 ~~~Y~~~~s~l~~-nG~~~~G~~~I~~~l~~lp-----~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~----~~   71 (106)
                      ..+|.+ ++.+.. +|..+.|+++|.+.+...-     ........+......+       ..+  +.|...+.    +.
T Consensus        25 ~~l~~~-Da~~~~~~g~~~~G~e~i~~~~~~~~~~~~~~~~~~~~~~~v~~~gD-------~A~--~~~~~~~~~~~~~~   94 (128)
T d2gxfa1          25 MNYYSE-DAVLVVKPGMIARGKEEIKKAFITIANYFNHHIVPTQGKMILLEAGD-------TVL--VLSQTLLDSDKKDS   94 (128)
T ss_dssp             TTSEEE-EEEEECSSSCEEEHHHHHHHHHHHTTSCCCSSCCCEEEEEEEEEETT-------EEE--EEEEEECCC-----
T ss_pred             HHhhcc-CCcEecCCCcceeehHHHHHHHHHHHHhcccccceeecceeEeecCC-------ceE--EEEEEEEEEcCCCC
Confidence            578998 887765 5678899999999987653     2233333333332222       233  34444432    22


Q ss_pred             -eeeeeeEEEEEEEeC-CeEEEEcee
Q psy5646          72 -KKTGFNQNFIISAEG-ARWKIISDV   95 (106)
Q Consensus        72 -~~~~F~qtFvL~~~~-~~y~I~nD~   95 (106)
                       ....-..|+++..+. |+|+|.=|.
T Consensus        95 ~~~~~~~~t~v~~r~~dG~Wki~~D~  120 (128)
T d2gxfa1          95 EYAMERRATYVFKKNAQGEWLCVIDN  120 (128)
T ss_dssp             ----EEEEEEEEEECTTSCEEEEEEE
T ss_pred             cccceEEEEEEEEECCCCcEEEEEEC
Confidence             233456788888864 789998664

>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BxeB1374-like
domain: Uncharacterized protein ECA3500
species: Pectobacterium atrosepticum [TaxId: 29471]

Probab=96.56  E-value=0.012  Score=35.09  Aligned_cols=88  Identities=18%  Similarity=0.213  Sum_probs=56.5

Q ss_pred             CCCCCCCCceEEEc--CCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeee
Q psy5646           2 GKLYKDEDAVLSWN--GHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFN   77 (106)
Q Consensus         2 ~~~Y~~~~s~l~~n--G~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~   77 (106)
                      .++|.+ ++.++.-  +....|.+++.+.+...+  .....+...+.....+.      .  ..+++....++.+..+ -
T Consensus        35 ~~l~a~-D~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~d------~--a~~~~~~~~~~~~~~G-r  104 (127)
T d2rcda1          35 DELFWH-DEKTVRYGAGENLYGIEEIRAFRLARPSAGLDRALRNTVITTYGHD------M--AVASTEFTRTGSTKIG-R  104 (127)
T ss_dssp             HHHBCC-STTCEEEETTEEEESHHHHHHHHHHSCCTTCCCEEEEEEEEEBTTS------E--EEEEEEEECSSCCSCE-E
T ss_pred             HHhhcC-CCcEEEeCCCcccccHHHHHHHHHhccccccceEeeeeEEEEeecc------h--hhheeeecccCCCCce-E
Confidence            357888 7766643  336789999999988765  33445555555544431      2  3344555555553332 3


Q ss_pred             EEEEEEEeCCeEEEEceeEEee
Q psy5646          78 QNFIISAEGARWKIISDVFRLQ   99 (106)
Q Consensus        78 qtFvL~~~~~~y~I~nD~fR~~   99 (106)
                      +|.+++..+++|+|..+.+-+.
T Consensus       105 ~T~v~~r~~ggWkIv~~H~S~~  126 (127)
T d2rcda1         105 QMQTWVKMPEGWRIVAAHVSLM  126 (127)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEEcCCeEEEEEEEEecc
Confidence            6778888899999999887653

>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: ECA1476-like
domain: Uncharacterized protein ECA1476
species: Pectobacterium atrosepticum [TaxId: 29471]

Probab=96.41  E-value=0.014  Score=34.70  Aligned_cols=91  Identities=14%  Similarity=0.214  Sum_probs=52.8

Q ss_pred             CCCCCCCCceEEEcCC-ccccHHHHHHHHHcCC---CeeEEEeEEEEEeCCcccccCceeEEEEE--EEEEEEC--Cce-
Q psy5646           2 GKLYKDEDAVLSWNGH-GTKGSQAIVKYISELP---PCDHELKSMDIHRLPEEAAQNQIAYLIST--SGTVVYK--NMK-   72 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~-~~~G~~~I~~~l~~lp---~~~h~i~s~D~q~~~~~~~~~~~~ili~V--~G~v~~~--~~~-   72 (106)
                      ..+|.+ ++.+...|. .+.|+++|.+.+..+-   ...+.....+.-.+.+      .......  .......  +.. 
T Consensus        30 ~~l~t~-Dav~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~A~~~~~~~~~~~~~~~g~~~  102 (132)
T d3d9ra1          30 IATYTD-DGVLMGPGRPAAVGKDELAEVYLSVFETVGFDMAYEIKEVVQTSA------DWAFVRSATEGTETNKATGVVT  102 (132)
T ss_dssp             HHTEEE-EEEEECTTSCCEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEET------TEEEEEEEEEEEEEETTTCCEE
T ss_pred             HHhcCC-CeEEEccCCcceehHHHHHHHHHHHhhcCCcceeeeccceeeecC------CceEEEEEEEEEEEecCCCcce
Confidence            357888 888877554 6889999999998754   2222222222222212      1233322  2333332  332 


Q ss_pred             eeeeeEEEEEEEeC-CeEEEEceeEEee
Q psy5646          73 KTGFNQNFIISAEG-ARWKIISDVFRLQ   99 (106)
Q Consensus        73 ~~~F~qtFvL~~~~-~~y~I~nD~fR~~   99 (106)
                      ...-..++++..+. |+|+|..++|-..
T Consensus       103 ~~~~~~~~v~~r~~dG~Wki~~~~~s~~  130 (132)
T d3d9ra1         103 PAAYQELFLLRKSATGSWQTARYCTSKI  130 (132)
T ss_dssp             EEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             ecceeEEEEEEECCCCcEEEEEEEecCC
Confidence            34445677888764 7899999988654

>d1m98a2 d.17.4.6 (A:176-317) Orange carotenoid protein, C-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Orange carotenoid protein, C-terminal domain
domain: Orange carotenoid protein, C-terminal domain
species: Cyanobacteria (Arthrospira maxima) [TaxId: 129910]

Probab=95.96  E-value=0.019  Score=36.20  Aligned_cols=85  Identities=12%  Similarity=0.066  Sum_probs=56.8

Q ss_pred             CCCCCCCCceEEEc-CCccccHHHHHHHHHcCC-CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEEC--Cc-eeeee
Q psy5646           2 GKLYKDEDAVLSWN-GHGTKGSQAIVKYISELP-PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK--NM-KKTGF   76 (106)
Q Consensus         2 ~~~Y~~~~s~l~~n-G~~~~G~~~I~~~l~~lp-~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~--~~-~~~~F   76 (106)
                      ..+|.+ ++.+.-. |.++.|+++|.+++.+.- ..+............+      ++..+.|+|.|+..  |. ....+
T Consensus        41 ~~lFa~-Dav~~~P~~~p~~G~eaI~~f~~~~~~~~~~~p~~g~~~~~~~------g~~~v~vtgkV~~~~~G~~~~vn~  113 (142)
T d1m98a2          41 ISLFAE-DGALQPPFQKPIVGKENTLRFFREECQNLKLIPERGVSEPTED------GYTQIKVTGKVQTPWFGGNVGMNI  113 (142)
T ss_dssp             HTTEEE-EEEEECTTSCCEESHHHHHHHHHHHCTTCEEEEEEEEEEECGG------GCEEEEEEEEEECTTTGGGCCEEE
T ss_pred             HHHcCC-CeEEeCCCCccccCHHHHHHHHHHhcccceecccceeeEeecC------CcEEEEEEEEEecCCCCcceeeee
Confidence            357777 7777654 568999999999998765 2233233333333433      57899999999853  33 24567


Q ss_pred             eEEEEEEEeCCeEEEEc
Q psy5646          77 NQNFIISAEGARWKIIS   93 (106)
Q Consensus        77 ~qtFvL~~~~~~y~I~n   93 (106)
                      .-.|.|-++++=.++.=
T Consensus       114 a~~F~ln~~GkI~~v~i  130 (142)
T d1m98a2         114 AWRFLLNPENKVFFVAI  130 (142)
T ss_dssp             EEEEEECTTSCEEEEEE
T ss_pred             EEEEEECCCCcEEEEEe
Confidence            77899987776666653

>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SO0125-like
domain: Uncharacterized protein Sfri1973
species: Shewanella frigidimarina [TaxId: 56812]

Probab=95.89  E-value=0.029  Score=32.67  Aligned_cols=85  Identities=9%  Similarity=0.053  Sum_probs=54.0

Q ss_pred             CCCCCCCCceEEEcCCccccHHHHHHHH-Hc----CCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEEC--Cc-ee
Q psy5646           2 GKLYKDEDAVLSWNGHGTKGSQAIVKYI-SE----LPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYK--NM-KK   73 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l-~~----lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~--~~-~~   73 (106)
                      .++|.| +..+...|....|.+++.+.+ ..    .+..++.+.........+       ..++.....+...  +. ..
T Consensus        25 ~~l~a~-D~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~gd-------~A~~~~~~~~~~~~~g~~~~   96 (121)
T d3bb9a1          25 RQSLAA-NVQIYEGGKVERSLTEYANHHMLADMAYLKGLTITPKEHQITITGD-------IAISTSISHAQGEYKGKSID   96 (121)
T ss_dssp             HHHEEE-EEEEEETTEEECSHHHHHHTHHHHHHHHHHTEEEEEEEEEEEEETT-------EEEEEEEEEEEECCC--CEE
T ss_pred             HHhhCC-CeEEEeCCCccCcHHHHHHHHHhhhhhcccCceEEEEEEEEEEcCC-------eeEEEEEEEEEeeccCCcce
Confidence            357888 888887777778888876543 22    236667777666665554       3455555555533  33 34


Q ss_pred             eeeeEEEEEEEeC-CeEEEEce
Q psy5646          74 TGFNQNFIISAEG-ARWKIISD   94 (106)
Q Consensus        74 ~~F~qtFvL~~~~-~~y~I~nD   94 (106)
                      .....+.+|.... ++|+|..-
T Consensus        97 ~~~~~t~v~~r~~dG~WkIv~~  118 (121)
T d3bb9a1          97 SMTMETLVLIKQADGRWKITHV  118 (121)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEE
T ss_pred             eeEEEEEEEEEccCCeEEEEEE
Confidence            5667788887764 78998753

>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: CHU142-like
domain: Uncharacterized protein CHU142
species: Cytophaga hutchinsonii [TaxId: 985]

Probab=95.58  E-value=0.089  Score=30.52  Aligned_cols=86  Identities=14%  Similarity=0.082  Sum_probs=49.6

Q ss_pred             CCCCCCCceEEEcCCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEE--EEECCce-eeeee
Q psy5646           3 KLYKDEDAVLSWNGHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGT--VVYKNMK-KTGFN   77 (106)
Q Consensus         3 ~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~--v~~~~~~-~~~F~   77 (106)
                      .+|.+ +..++..+....+++++.+.+..-+  .....+.....+...+       ..++.....  +..+|.+ ...+-
T Consensus        28 ~l~~~-d~~~~~~~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~gd-------~Av~~~~~~~~~~~~g~~~~~~~r   99 (122)
T d2r4ia1          28 VLLHD-DLLFIIPSGETVTKETDIAAYSSGKIALRAVVPSDYIIRIIHD-------TVVVSVNIEIKGEYMEHTLDNTFR   99 (122)
T ss_dssp             HHEEE-EEEEECTTSCEECHHHHHHHHHTTCEEEEEEEEEEEEEEEETT-------EEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             hhhcc-cEEEEeccceeccHHHHHHHHhcCcccccceeeeeeEEEEEec-------eeeEeeEEEEEEecCCCcceeeEE
Confidence            45666 6666554335567788888887655  2233444444444433       223223222  2344543 34556


Q ss_pred             EEEEEEEeCCeEEEEceeE
Q psy5646          78 QNFIISAEGARWKIISDVF   96 (106)
Q Consensus        78 qtFvL~~~~~~y~I~nD~f   96 (106)
                      .|.++...+++|+|.....
T Consensus       100 ~t~V~~k~~g~Wkiv~~h~  118 (122)
T d2r4ia1         100 YLRVWKLFDGNWKVIAGSC  118 (122)
T ss_dssp             EEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEECCEEEEEEEEe
Confidence            7788888999999987654

>d2f86b1 d.17.4.7 (B:343-471) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
domain: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.90  E-value=0.15  Score=29.29  Aligned_cols=87  Identities=11%  Similarity=0.098  Sum_probs=50.1

Q ss_pred             CCCCCCCceEEEc---CCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEE--EEEEEEECCce-ee
Q psy5646           3 KLYKDEDAVLSWN---GHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLIS--TSGTVVYKNMK-KT   74 (106)
Q Consensus         3 ~~Y~~~~s~l~~n---G~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~--V~G~v~~~~~~-~~   74 (106)
                      ++|.+ +..+.+-   +....|.+.|...+...+  ...+.+.........++     ..+...  ..+....+|.+ ..
T Consensus        32 ~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~-----~av~~~~~~~~~~~~~g~~~~~  105 (129)
T d2f86b1          32 RLCDT-SMTCFEPEALGNLIEGIEFHRFYFDGNRKNQVHTTMLNPNVHIIGED-----AACVAYVKLTQFLDRNGEAHTR  105 (129)
T ss_dssp             HHEEE-EEEEECGGGTTCCEETTHHHHTTSSSCSCCSCEEEEEEEEEEEETTT-----EEEEEEEEEEEEECTTSCEEEE
T ss_pred             HhhcC-CceEEEecCCCceeehHHHHHHHHhhcccccccceeccceeEEcCCh-----heeEEEEEEEEEeccCCCcccc
Confidence            45666 6655542   235678888888887776  44444444444443331     122221  22222233442 45


Q ss_pred             eeeEEEEEEEeCCeEEEEcee
Q psy5646          75 GFNQNFIISAEGARWKIISDV   95 (106)
Q Consensus        75 ~F~qtFvL~~~~~~y~I~nD~   95 (106)
                      .+-.|.++...+++|+|....
T Consensus       106 ~~r~T~V~~k~~g~Wkivh~H  126 (129)
T d2f86b1         106 QSQESRVWSKKQGRWVCVHVH  126 (129)
T ss_dssp             EEEEEEEEEEETTEEEEEEEE
T ss_pred             cEEEEEEEEEECCEEEEEEEE
Confidence            567799999999999997654

>d2rgqa1 d.17.4.25 (A:1-133) Uncharacterized protein NpunR3134 {Nostoc punctiforme [TaxId: 272131]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rv3472-like
domain: Uncharacterized protein NpunR3134
species: Nostoc punctiforme [TaxId: 272131]

Probab=94.81  E-value=0.19  Score=30.02  Aligned_cols=89  Identities=17%  Similarity=0.100  Sum_probs=53.1

Q ss_pred             CCCCCCCCceEEEcCCccccHHHHHHHHHc-----CCCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeee
Q psy5646           2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISE-----LPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGF   76 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~-----lp~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F   76 (106)
                      ..+|.+ ++.+..-+.+..|+++|.+.+..     .+.++|.+...-.....+.+..  .+.+     .+...+......
T Consensus        31 ~~~Fte-Da~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~H~~~n~~i~~~gd~A~~--~~~~-----~~~~~~~~~~~~  102 (133)
T d2rgqa1          31 LATFAS-DGALQGFWGIAKGKEELRQGFYAMLDTFARGKRHCSSNAIIQGNYDEATM--ESYL-----TVVNREDLNRAG  102 (133)
T ss_dssp             HTTEEE-EEEEEETTEEEESHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSEEEE--EEEE-----EEEESSSSCEEE
T ss_pred             HhhccC-CcEEEcCCcccCCHHHHHHHHHHHhhhcccccceecCCeEEEEcCCEEEE--EEEE-----EEEecCCceEEE
Confidence            356777 88888777889999999988753     2478899988777654442111  1111     122222211111


Q ss_pred             e--EEEEEEEeCCeEEEEceeEEe
Q psy5646          77 N--QNFIISAEGARWKIISDVFRL   98 (106)
Q Consensus        77 ~--qtFvL~~~~~~y~I~nD~fR~   98 (106)
                      .  -...++..+++|+|..=.+++
T Consensus       103 ~g~Y~D~~~k~dg~W~i~~R~~~~  126 (133)
T d2rgqa1         103 SAFVKDQVRKINGKWYLILRQIEV  126 (133)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEEEEECCEEEEEEEEEEE
Confidence            1  112245678999998766654

>d2chca1 d.17.4.25 (A:1-167) Uncharacterized protein Rv3472 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rv3472-like
domain: Uncharacterized protein Rv3472
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.15  E-value=0.26  Score=30.92  Aligned_cols=91  Identities=13%  Similarity=0.145  Sum_probs=56.3

Q ss_pred             CCCCCCCCceEEEcCCccccHHHHHHHHHcCC---CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCce-eeeee
Q psy5646           2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISELP---PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMK-KTGFN   77 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp---~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~-~~~F~   77 (106)
                      ..+|.+ ++.+...|....|+++|.+.+...+   .+.|.+.........+.+..  .+.++...   ...+.. .....
T Consensus        34 ~~lFte-Da~~~~~~~~~~g~~~I~~~~~~~~~~~~~~H~~~n~~i~i~gd~A~~--~~~~~~~~---~~~~~~~~~~~G  107 (167)
T d2chca1          34 AGCFTE-DGAFEFDGWVIRGRPALREYADAHARVVRGRHLTTDLLYEVDGDVATG--RSASVVTL---ATAAGYKILGSG  107 (167)
T ss_dssp             HTTEEE-EEEEEETTEEEESHHHHHHHHHHHHHHCCCCEEEEEEEEEEETTEEEE--EEEEEEEE---EETTEEEEEEEE
T ss_pred             HHhccC-CeEEEeCCcccccHHHHHHHHHHhccccceEEEccccEEEecCCEEEE--EEEEEEEE---EecCcceEEEEE
Confidence            357888 8988888889999999988776543   88898888777654443211  12222221   122221 11111


Q ss_pred             -EEEEEEEeCCeEEEEceeEEe
Q psy5646          78 -QNFIISAEGARWKIISDVFRL   98 (106)
Q Consensus        78 -qtFvL~~~~~~y~I~nD~fR~   98 (106)
                       -...++..+++|+|..=.|++
T Consensus       108 ~Y~D~~~r~dg~WkIs~R~~~~  129 (167)
T d2chca1         108 EYQDRLIKQDGQWRIAYRRLRN  129 (167)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEEECCEEEEEEEEEEe
Confidence             123344577999999988776

>d2ux0a1 d.17.4.7 (A:387-521) Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
domain: Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.27  Score=28.49  Aligned_cols=86  Identities=14%  Similarity=0.122  Sum_probs=50.1

Q ss_pred             CCCCCCCceEEE---cCCccccHHHHHHHHHcCC-----CeeEEEeEEEEEeCCcccccCceeEEEEE-EEEEEE--CCc
Q psy5646           3 KLYKDEDAVLSW---NGHGTKGSQAIVKYISELP-----PCDHELKSMDIHRLPEEAAQNQIAYLIST-SGTVVY--KNM   71 (106)
Q Consensus         3 ~~Y~~~~s~l~~---nG~~~~G~~~I~~~l~~lp-----~~~h~i~s~D~q~~~~~~~~~~~~ili~V-~G~v~~--~~~   71 (106)
                      ++|.+ +..+..   +|....|.+++...+..+.     .....+.....+...+.      ..++.. ......  +|.
T Consensus        34 ~~~~~-d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gdd------aa~~~~~~~~~~~~~~g~  106 (135)
T d2ux0a1          34 KICDP-GLTSFEPEALGNLVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVIGED------AACIAYIRLTQYIDGQGR  106 (135)
T ss_dssp             HHEEE-EEEEECGGGTTCEEEHHHHHHHHHHHTTTTCCSCEEEEEEEEEEEECSTT------EEEEEEEEEEEEECTTSC
T ss_pred             HhCcC-CCcEEEeccCCceechHHHHHHHHHHHhccCCcccEEEecceeEEEEcCc------EEEEEEEEEEEEeccCCc
Confidence            45666 666654   2446678888888887764     22334444555544442      332222 222222  233


Q ss_pred             e-eeeeeEEEEEEEeCCeEEEEcee
Q psy5646          72 K-KTGFNQNFIISAEGARWKIISDV   95 (106)
Q Consensus        72 ~-~~~F~qtFvL~~~~~~y~I~nD~   95 (106)
                      + ....-.|+++...++.|+|....
T Consensus       107 ~~~~~~r~T~V~~r~~g~Wkivh~H  131 (135)
T d2ux0a1         107 PRTSQSEETRVWHRRDGKWLNVHYH  131 (135)
T ss_dssp             EEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             eeeEeEEEEEEEEEECCEEEEEEEE
Confidence            2 34567899999999999998653

>d3cnxa1 d.17.4.17 (A:5-157) Uncharacterized protein SAV4671 {Streptomyces avermitilis [TaxId: 33903]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SAV4671-like
domain: Uncharacterized protein SAV4671
species: Streptomyces avermitilis [TaxId: 33903]

Probab=92.37  E-value=0.64  Score=28.18  Aligned_cols=74  Identities=8%  Similarity=0.073  Sum_probs=46.7

Q ss_pred             cCCccccHHHHHHHHHcC----CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEE----------CCc-eeeeeeEE
Q psy5646          15 NGHGTKGSQAIVKYISEL----PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVY----------KNM-KKTGFNQN   79 (106)
Q Consensus        15 nG~~~~G~~~I~~~l~~l----p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~----------~~~-~~~~F~qt   79 (106)
                      .|.++.|.++|.+.+...    +..++++..+......+       ..++.+.-.+..          ++. ....-..|
T Consensus        59 g~~~l~G~~ai~~~~~~~~~~~~~~~~~~~~~~v~v~gD-------~A~v~~~~~v~~~~~~~~~~~~~g~~~~~~~r~T  131 (153)
T d3cnxa1          59 GWPVLSGRGEVLRSYALIMANTEYIQFFLTDVHVSVTGD-------TALVTCTENILSGGPPPDDSDELGPLVGQLVVAT  131 (153)
T ss_dssp             TCCEEEHHHHHHHHHHHHHHTCSEEEEEEEEEEEEEETT-------EEEEEEEEEEEEEC---------CCCEEEEEEEE
T ss_pred             CCccccCHHHHHHHHHHHhcccCcccceEEEeEEEEeCc-------EEEEEEEEEEEeecccccccccCCcccceeEEEE
Confidence            456899999999888654    35567777777776655       223333333321          122 12233467


Q ss_pred             EEEEEeCCeEEEEcee
Q psy5646          80 FIISAEGARWKIISDV   95 (106)
Q Consensus        80 FvL~~~~~~y~I~nD~   95 (106)
                      .++..++++|+|..+.
T Consensus       132 ~v~~k~dg~Wkivh~H  147 (153)
T d3cnxa1         132 NVFRRTPDGWKLWSHH  147 (153)
T ss_dssp             EEEECCTTCCEEEEEE
T ss_pred             EEEEEECCEEEEEEEe
Confidence            7888888999998765

>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722 {Novosphingobium aromaticivorans [TaxId: 48935]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BaiE/LinA-like
domain: Uncharacterized protein Saro3722
species: Novosphingobium aromaticivorans [TaxId: 48935]

Probab=91.82  E-value=0.53  Score=28.26  Aligned_cols=94  Identities=16%  Similarity=0.169  Sum_probs=53.9

Q ss_pred             CCCCCCCCceEEEcC-CccccHHHHHHHHHcC-------CCeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCcee
Q psy5646           2 GKLYKDEDAVLSWNG-HGTKGSQAIVKYISEL-------PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKK   73 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG-~~~~G~~~I~~~l~~l-------p~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~   73 (106)
                      ..+|.+ ++.+.+.+ ....|.+.+.+.+...       +.++|.+...-.....+.+.   ....+.+..  ...+...
T Consensus        40 ~~lFt~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~i~~~~i~~~~d~a~---~~~~~~~~~--~~~~~~~  113 (153)
T d2rfra1          40 SELWVE-DGEYAVVGFATAKGRAAIAALIDGQTHRALMADGCAHFLGPATVTVEGDTAT---ARCHSVVFR--CVSGTFG  113 (153)
T ss_dssp             HTTEEE-EEEEEETTSCCEESHHHHHHHHHSHHHHHHHHHCEEEEECCCEEEEETTEEE---EEEEEEEEE--EETTEEE
T ss_pred             HhhccC-CEEEEeeccccccccchHHHHHHHHHhhccCCCcEEEEeCCEEEEEcCCeEE---EEEEEEEEE--EeCCCCE
Confidence            356777 88877754 4566676666655433       27888888766654443221   112222222  2223211


Q ss_pred             e--eeeEEEEEEEeCCeEEEEceeEEeeec
Q psy5646          74 T--GFNQNFIISAEGARWKIISDVFRLQQT  101 (106)
Q Consensus        74 ~--~F~qtFvL~~~~~~y~I~nD~fR~~~~  101 (106)
                      .  .-.-...+.+.+++|+|..-..++.+.
T Consensus       114 ~~~~g~y~d~~~r~~g~WkI~~r~~~~l~~  143 (153)
T d2rfra1         114 SHRVSANRWTFRRTPAGWRAVRRENALLDG  143 (153)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEEEEEEESSS
T ss_pred             EEEEEEEEEEEEEECCEEEEEEEEEEecCC
Confidence            1  112355677888999999988887654

>d3blza1 d.17.4.14 (A:3-126) Uncharacterized protein Sbal0622 {Shewanella baltica [TaxId: 62322]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Sbal0622-like
domain: Uncharacterized protein Sbal0622
species: Shewanella baltica [TaxId: 62322]

Probab=84.61  E-value=2.3  Score=24.46  Aligned_cols=83  Identities=13%  Similarity=0.213  Sum_probs=46.5

Q ss_pred             CCCCCCCCceEE-E--cCCcc-ccHHHHHHHHHcC-C---CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCcee
Q psy5646           2 GKLYKDEDAVLS-W--NGHGT-KGSQAIVKYISEL-P---PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKK   73 (106)
Q Consensus         2 ~~~Y~~~~s~l~-~--nG~~~-~G~~~I~~~l~~l-p---~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~   73 (106)
                      .+.|++ ++.+. +  +|... ...++....+.+- +   ...+.+..+|..  .+.      . .+.+.-.. +   ..
T Consensus        31 ~~~F~~-da~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~--gd~------A-~~~~~~~~-~---~~   96 (124)
T d3blza1          31 RPAFSS-QATIFGVDVDNKLTGGPIQGLFDVIDNVFHPSPEAKAAIARIDIV--GTA------A-SARIDTDD-I---SG   96 (124)
T ss_dssp             GGGEEE-EEEEEEECTTSCEEEEETHHHHHHHHHTCCCCTTCEEEEEEEEEE--TTE------E-EEEEEEEE-E---TT
T ss_pred             HHhcCC-CcEEEeecCCCcceeccHHHHHHHHhhcCCCCceeEEEEEEEEEc--CCc------e-EEEEEEee-c---cC
Confidence            456777 77764 3  34322 2355666666442 2   345555555542  221      1 11111111 1   12


Q ss_pred             eeeeEEEEEEEeCCeEEEEceeEEe
Q psy5646          74 TGFNQNFIISAEGARWKIISDVFRL   98 (106)
Q Consensus        74 ~~F~qtFvL~~~~~~y~I~nD~fR~   98 (106)
                      ..|.-.|.|...+|+|+|.+-.|+.
T Consensus        97 ~~y~D~~~lvK~dG~WkI~~r~~~~  121 (124)
T d3blza1          97 FRFTDFFNLLKVEGKWTVVSKIYHT  121 (124)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEECCEEEEEEEEEEe
Confidence            4688889999999999999998865

>d3er7a1 d.17.4.24 (A:5-122) Uncharacterized protein Exig0174 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Exig0174-like
domain: Uncharacterized protein Exig0174
species: Exiguobacterium sibiricum 255-15 [TaxId: 262543]

Probab=84.61  E-value=0.093  Score=31.61  Aligned_cols=31  Identities=19%  Similarity=0.358  Sum_probs=26.9

Q ss_pred             CCCCCCCCceEEEcCCccccHHHHHHHHHcCC
Q psy5646           2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISELP   33 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG~~~~G~~~I~~~l~~lp   33 (106)
                      -.|+++ ++++.-||....|+++|..++...=
T Consensus        24 i~LFSd-d~~i~anG~~~~G~~ai~sFf~~FF   54 (118)
T d3er7a1          24 ISLFSD-EITFVLNGQEQHGIDAWKQFVRMVF   54 (118)
T ss_dssp             HHTEEE-EEEEEETTEEEESHHHHHHHHHHHH
T ss_pred             HHHhcc-CeEEEecCccccChHHHHHHHHHHH
Confidence            357888 9999999999999999999887753

>d3en8a1 d.17.4.20 (A:1-127) Uncharacterized protein BxeB2092 {Burkholderia xenovorans [TaxId: 36873]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: Rpa4348-like
domain: Uncharacterized protein BxeB2092
species: Burkholderia xenovorans [TaxId: 36873]

Probab=81.56  E-value=3.3  Score=23.92  Aligned_cols=81  Identities=16%  Similarity=0.235  Sum_probs=50.0

Q ss_pred             CCCCCCCCceEEEc--CCccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEEECCceeeeee
Q psy5646           2 GKLYKDEDAVLSWN--GHGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFN   77 (106)
Q Consensus         2 ~~~Y~~~~s~l~~n--G~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~~~~~~~~~F~   77 (106)
                      ..+|.+ ++.+.+.  |.+..|+++|.+++..+|  ...+.+..+.+.   +      ..+  .+...+..++. ...+.
T Consensus        26 ~~l~ad-D~v~~~p~~~~~~~G~e~i~~~~~~~~~~~~~~~~~~~~~~---g------~~v--v~~~~~t~~~~-~~~~~   92 (127)
T d3en8a1          26 HDIYDD-DAICDYPQSGERILGRMNLQALRSHHPGKPAGFEVRRIQGE---G------NLW--ITEYSISYNGR-PAYTV   92 (127)
T ss_dssp             TTTEEE-EEEEEETTTTEEEESHHHHHHHHHHTTCSCSEEEEEEEEEE---T------TEE--EEEEEEEETTE-EEEEE
T ss_pred             HHHhcC-CEEEEcCCcccccchHHHHHHHHHHHhccCccceeEEEecC---C------CEE--EEEEEECCCCc-ceEEE
Confidence            578999 8888774  457899999999999998  344445444332   1      122  33445554433 45567


Q ss_pred             EEEEEEEeCCeEEEEceeEE
Q psy5646          78 QNFIISAEGARWKIISDVFR   97 (106)
Q Consensus        78 qtFvL~~~~~~y~I~nD~fR   97 (106)
                      ..|-+  .+++-.-..+.|.
T Consensus        93 ~~f~~--~dGkI~~~~~Y~~  110 (127)
T d3en8a1          93 SIMEF--RNGKVVHETQYFS  110 (127)
T ss_dssp             EEEEE--ETTEEEEEEEEEE
T ss_pred             EEEEE--ECCEEEEEEEecC
Confidence            77766  3465555555543

>d1s5aa_ d.17.4.10 (A:) Hypothetical protein YesE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: PhzA/PhzB-like
domain: Hypothetical protein YesE
species: Bacillus subtilis [TaxId: 1423]

Probab=80.43  E-value=3.6  Score=23.62  Aligned_cols=81  Identities=14%  Similarity=0.197  Sum_probs=45.0

Q ss_pred             CCCCCCCCceEEEcC------CccccHHHHHHHHHcCC--CeeEEEeEEEEEeCCcccccCceeEEEEEEEEEE--ECCc
Q psy5646           2 GKLYKDEDAVLSWNG------HGTKGSQAIVKYISELP--PCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVV--YKNM   71 (106)
Q Consensus         2 ~~~Y~~~~s~l~~nG------~~~~G~~~I~~~l~~lp--~~~h~i~s~D~q~~~~~~~~~~~~ili~V~G~v~--~~~~   71 (106)
                      ..+|++ ++.+...+      ....|+++|.+++..+.  ....++...+.....+.     ..+++...+...  .+|.
T Consensus        27 ~~l~~e-D~v~~~p~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~-----~~v~~~~~~~~~~~~tG~  100 (139)
T d1s5aa_          27 TELWDE-NAVFEFPYAPEGSPKRIEGKAAIYDYIKDYPKQIHLSSFTAPTVYRSADS-----NTVIAEFQCDGHVIETGL  100 (139)
T ss_dssp             HTTEEE-EEEEECTTCCTTSCSEEESHHHHHHHHTTHHHHEEEEEECCCEEEEBSSS-----SEEEEEEEEEEEETTTCC
T ss_pred             HHHhCC-ceEEEEccCCccccceecchHHHHHhhhhchhhcccceeeEEEeeeeecC-----ccceeEEEeecccccccc
Confidence            467888 77665533      35689999999988775  22333333444444331     244544444443  3444


Q ss_pred             e-eeeeeEEEEEEEeCCeEE
Q psy5646          72 K-KTGFNQNFIISAEGARWK   90 (106)
Q Consensus        72 ~-~~~F~qtFvL~~~~~~y~   90 (106)
                      + ...+...|-+  .+++..
T Consensus       101 ~~~~~~~~~~~~--~dGkI~  118 (139)
T d1s5aa_         101 PYRQSYISVIET--RDGRIV  118 (139)
T ss_dssp             BCCCEEEEEEEE--ETTEEE
T ss_pred             cceeeEEEEEEE--ECCEEE
Confidence            3 3456667766  345543