Psyllid ID: psy5674

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
MSSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIRAKYEQKKYIASEWVPPVLPKNSFVG
cccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEccccEEEEccccccccccccccccEEEEccccccHHHHHHHHHHcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccc
ccccccccHHHHHHHHHHHHHHHHHHcccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccc
MSSKAEKERQKQIQDKCQNLLMQMLkdddnkycvdcdakgprwaswnIGIFLCIRCAGIHRNLGVHISrvksvnldtwtpEQVVSLQQMGNSRARAVYeanipdnfrrpqtdSTLEAFIRAKYEQKKyiasewvppvlpknsfvg
msskaekeRQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEanipdnfrrpqtdSTLEAFIRAKYEQKkyiasewvppvlpknsfvg
MSSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIRAKYEQKKYIASEWVPPVLPKNSFVG
*****************QNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSL***********************************************************
***********************MLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIRAKYEQKK******************
*************QDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIRAKYEQKKYIASEWVPPVLPKNSFVG
**********KQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIRAKYEQKKYIAS**************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIRAKYEQKKYIASEWVPPVLPKNSFVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query145 2.2.26 [Sep-21-2011]
Q91VZ6 440 Stromal membrane-associat yes N/A 0.827 0.272 0.641 3e-47
Q5F413 428 Stromal membrane-associat no N/A 0.793 0.268 0.669 2e-46
Q8IYB5 467 Stromal membrane-associat no N/A 0.827 0.256 0.633 3e-46
Q7TN29 428 Stromal membrane-associat no N/A 0.793 0.268 0.652 4e-45
Q8WU79 429 Stromal membrane-associat no N/A 0.793 0.268 0.652 4e-45
Q5EA00 429 Stromal membrane-associat no N/A 0.793 0.268 0.652 5e-45
Q9FL69 483 Probable ADP-ribosylation yes N/A 0.8 0.240 0.5 2e-33
Q0WQQ1232 Probable ADP-ribosylation no N/A 0.848 0.530 0.440 3e-31
P40529 298 ADP-ribosylation factor G yes N/A 0.758 0.369 0.535 1e-28
Q9UT34 320 Uncharacterized protein C yes N/A 0.786 0.356 0.470 1e-27
>sp|Q91VZ6|SMAP1_MOUSE Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1 SV=1 Back     alignment and function desciption
 Score =  186 bits (473), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 77/120 (64%), Positives = 105/120 (87%)

Query: 1   MSSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIH 60
           M++++ +E+ +++ ++ Q +L ++L+++DNKYC DC+AKGPRWASWNIG+F+CIRCAGIH
Sbjct: 1   MATRSCREKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIH 60

Query: 61  RNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIR 120
           RNLGVHISRVKSVNLD WTPEQ+  +Q MGN++AR +YEAN+P+NFRRPQTD  +E FIR
Sbjct: 61  RNLGVHISRVKSVNLDQWTPEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIR 120
GTPase activating protein that acts on ARF6. Plays a role in clathrin-dependent endocytosis. May play a role in erythropoiesis.
Mus musculus (taxid: 10090)
>sp|Q5F413|SMAP2_CHICK Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q8IYB5|SMAP1_HUMAN Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q7TN29|SMAP2_MOUSE Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1 Back     alignment and function description
>sp|Q8WU79|SMAP2_HUMAN Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q5EA00|SMAP2_BOVIN Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FL69|AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1 Back     alignment and function description
>sp|Q0WQQ1|AGD15_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis thaliana GN=AGD15 PE=2 SV=1 Back     alignment and function description
>sp|P40529|AGE2_YEAST ADP-ribosylation factor GTPase-activating protein effector protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AGE2 PE=1 SV=1 Back     alignment and function description
>sp|Q9UT34|YIQ9_SCHPO Uncharacterized protein C824.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC824.09c PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query145
307166371 471 Stromal membrane-associated protein 1 [C 0.965 0.297 0.871 9e-72
332022411 469 Stromal membrane-associated protein 1 [A 0.965 0.298 0.871 1e-71
307195120 476 Stromal membrane-associated protein 1 [H 0.965 0.294 0.864 3e-71
328716210 492 PREDICTED: stromal membrane-associated p 0.965 0.284 0.864 4e-71
110755787 486 PREDICTED: stromal membrane-associated p 0.965 0.288 0.864 5e-71
350419597 484 PREDICTED: stromal membrane-associated p 0.965 0.289 0.864 6e-71
340712856 484 PREDICTED: stromal membrane-associated p 0.965 0.289 0.864 7e-71
383850494 478 PREDICTED: stromal membrane-associated p 0.965 0.292 0.864 8e-71
380011048 483 PREDICTED: LOW QUALITY PROTEIN: stromal 0.965 0.289 0.864 8e-71
357611582 461 hypothetical protein KGM_20080 [Danaus p 0.965 0.303 0.85 1e-70
>gi|307166371|gb|EFN60508.1| Stromal membrane-associated protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  274 bits (700), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 122/140 (87%), Positives = 133/140 (95%)

Query: 1   MSSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIH 60
           M+S+ EKER KQIQ+KCQNLL QML+D+DNKYCVDCDAKGPRWASWN+GIFLCIRCAGIH
Sbjct: 1   MTSRHEKERAKQIQEKCQNLLTQMLRDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIH 60

Query: 61  RNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIR 120
           RNLGVHIS+VKSVNLDTWTPEQVVSLQQMGNSRARAVYEAN+PD+FRRPQTD +LE+FIR
Sbjct: 61  RNLGVHISKVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQTDCSLESFIR 120

Query: 121 AKYEQKKYIASEWVPPVLPK 140
           AKYE KKYIA EWVPP LPK
Sbjct: 121 AKYEHKKYIAREWVPPPLPK 140

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332022411|gb|EGI62719.1| Stromal membrane-associated protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307195120|gb|EFN77131.1| Stromal membrane-associated protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|328716210|ref|XP_001946629.2| PREDICTED: stromal membrane-associated protein 2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|110755787|ref|XP_623142.2| PREDICTED: stromal membrane-associated protein 1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|350419597|ref|XP_003492238.1| PREDICTED: stromal membrane-associated protein 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340712856|ref|XP_003394969.1| PREDICTED: stromal membrane-associated protein 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383850494|ref|XP_003700830.1| PREDICTED: stromal membrane-associated protein 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380011048|ref|XP_003689625.1| PREDICTED: LOW QUALITY PROTEIN: stromal membrane-associated protein 1-like [Apis florea] Back     alignment and taxonomy information
>gi|357611582|gb|EHJ67556.1| hypothetical protein KGM_20080 [Danaus plexippus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query145
FB|FBgn0033349 517 CG8243 [Drosophila melanogaste 0.965 0.270 0.814 1.6e-61
ZFIN|ZDB-GENE-060920-2 483 smap1 "stromal membrane-associ 0.882 0.265 0.664 4.1e-49
UNIPROTKB|F1MU99 471 SMAP1 "Uncharacterized protein 0.882 0.271 0.648 1.2e-47
UNIPROTKB|A0FI88 473 SMAP1 "Uncharacterized protein 0.882 0.270 0.648 1.2e-47
UNIPROTKB|A1EAA2 446 SMAP1 "SMAP1 protein" [Canis l 0.882 0.286 0.648 1.2e-47
UNIPROTKB|F1RTT0 469 SMAP1 "Uncharacterized protein 0.882 0.272 0.648 1.2e-47
MGI|MGI:2138261 440 Smap1 "stromal membrane-associ 0.882 0.290 0.648 1.2e-47
UNIPROTKB|E1BX68 447 E1BX68 "Uncharacterized protei 0.882 0.286 0.640 6.9e-47
UNIPROTKB|Q8IYB5 467 SMAP1 "Stromal membrane-associ 0.882 0.274 0.640 8.8e-47
WB|WBGene00012359 495 W09D10.1 [Caenorhabditis elega 0.917 0.268 0.586 3.9e-44
FB|FBgn0033349 CG8243 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 114/140 (81%), Positives = 124/140 (88%)

Query:     1 MSSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIH 60
             MSS    +R K IQ+KCQ LL QML+D+DNKYCVDCDAKGPRWASWN+G+FLCIRCAGIH
Sbjct:     1 MSSSNAGQRTKLIQEKCQTLLTQMLRDEDNKYCVDCDAKGPRWASWNLGMFLCIRCAGIH 60

Query:    61 RNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIR 120
             RNLGVHISRVKSVNLDTWTPEQV+SLQQMGNSRARAVYEA +PD FRRPQTD+ LE FIR
Sbjct:    61 RNLGVHISRVKSVNLDTWTPEQVISLQQMGNSRARAVYEAQLPDGFRRPQTDTALENFIR 120

Query:   121 AKYEQKKYIASEWVPPVLPK 140
             AKYE KKY+A EWVPP  PK
Sbjct:   121 AKYEHKKYLAREWVPPSPPK 140
GO:0008060 "ARF GTPase activator activity" evidence=ISS
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
ZFIN|ZDB-GENE-060920-2 smap1 "stromal membrane-associated protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MU99 SMAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A0FI88 SMAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A1EAA2 SMAP1 "SMAP1 protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RTT0 SMAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2138261 Smap1 "stromal membrane-associated protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BX68 E1BX68 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IYB5 SMAP1 "Stromal membrane-associated protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00012359 W09D10.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q91VZ6SMAP1_MOUSENo assigned EC number0.64160.82750.2727yesN/A
P40529AGE2_YEASTNo assigned EC number0.53500.75860.3691yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 1e-54
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 7e-44
COG5347 319 COG5347, COG5347, GTPase-activating protein that r 3e-43
PLN03114 395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 2e-23
PLN03131 705 PLN03131, PLN03131, hypothetical protein; Provisio 2e-17
PLN03119 648 PLN03119, PLN03119, putative ADP-ribosylation fact 3e-17
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information 
 Score =  167 bits (424), Expect = 1e-54
 Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 2/117 (1%)

Query: 18  QNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDT 77
           + LL ++ K   NK C DC A  P WAS N+GIF+CIRC+G+HR+LGVHIS+V+S+ LD 
Sbjct: 1   KRLLRELRKLPGNKVCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDK 60

Query: 78  WTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDST--LEAFIRAKYEQKKYIASE 132
           WTPEQ+  ++  GN RA   +EAN+P     P +      E+FIRAKY +K +  +E
Sbjct: 61  WTPEQLEFMKAGGNKRANEFWEANLPPPKPPPSSSDREKRESFIRAKYVEKLFAEAE 117

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 145
KOG0703|consensus 287 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 100.0
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 100.0
PLN03131 705 hypothetical protein; Provisional 100.0
COG5347 319 GTPase-activating protein that regulates ARFs (ADP 100.0
PLN03114 395 ADP-ribosylation factor GTPase-activating protein 99.97
KOG0705|consensus 749 99.97
KOG0704|consensus 386 99.96
KOG0706|consensus 454 99.96
KOG0521|consensus 785 99.93
KOG0818|consensus 669 99.89
KOG1117|consensus 1186 99.84
KOG0702|consensus 524 99.7
KOG0521|consensus785 95.36
PRK12495226 hypothetical protein; Provisional 93.84
TIGR0241963 C4_traR_proteo phage/conjugal plasmid C-4 type zin 91.32
PRK1101988 hypothetical protein; Provisional 89.79
PF0827143 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013 88.39
PF0128634 XPA_N: XPA protein N-terminal; InterPro: IPR022652 88.35
PF0064342 zf-B_box: B-box zinc finger; InterPro: IPR000315 Z 87.95
PRK1371573 conjugal transfer protein TraR; Provisional 87.53
PHA0008072 DksA-like zinc finger domain containing protein 85.38
COG1734120 DksA DnaK suppressor protein [Signal transduction 84.67
PF02318118 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 84.31
PRK00085247 recO DNA repair protein RecO; Reviewed 83.32
TIGR00613241 reco DNA repair protein RecO. All proteins in this 80.9
>KOG0703|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.6e-46  Score=305.61  Aligned_cols=121  Identities=57%  Similarity=1.092  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHHhhcc
Q psy5674          12 QIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGN   91 (145)
Q Consensus        12 ~~~e~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~~~GN   91 (145)
                      ...+.++..|++||+.|+|++|||||+++|.|||+|+|||||+.|+||||+||+|||+|||++||.|++|+|+.|+..||
T Consensus         7 ~~~~~~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~~~GN   86 (287)
T KOG0703|consen    7 GSNERNKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMISMGN   86 (287)
T ss_pred             cccchHHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeeccccCHHHHHHHHHHcc
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCchHHHHHHHHHHhhcccccCC
Q psy5674          92 SRARAVYEANIPDNFRRPQTDSTLEAFIRAKYEQKKYIASE  132 (145)
Q Consensus        92 ~~~n~~~e~~~p~~~~~p~~~~~~~~fI~~KY~~k~f~~~~  132 (145)
                      .+||++||+.+|+.+.+|.++..+|+|||+||+.++|+.+.
T Consensus        87 ~~an~~~ea~~p~~~~~p~~d~~~e~FIR~KYE~kkf~~~~  127 (287)
T KOG0703|consen   87 AKANSYYEAKLPDPFRRPGPDDLVEQFIRDKYERKKFLDPE  127 (287)
T ss_pred             hhhhhhccccCCccccCCChHHHHHHHHHHHHhhhhhccch
Confidence            99999999999999999999999999999999999999975

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0705|consensus Back     alignment and domain information
>KOG0704|consensus Back     alignment and domain information
>KOG0706|consensus Back     alignment and domain information
>KOG0521|consensus Back     alignment and domain information
>KOG0818|consensus Back     alignment and domain information
>KOG1117|consensus Back     alignment and domain information
>KOG0702|consensus Back     alignment and domain information
>KOG0521|consensus Back     alignment and domain information
>PRK12495 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02419 C4_traR_proteo phage/conjugal plasmid C-4 type zinc finger protein, TraR family Back     alignment and domain information
>PRK11019 hypothetical protein; Provisional Back     alignment and domain information
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer Back     alignment and domain information
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK13715 conjugal transfer protein TraR; Provisional Back     alignment and domain information
>PHA00080 DksA-like zinc finger domain containing protein Back     alignment and domain information
>COG1734 DksA DnaK suppressor protein [Signal transduction mechanisms] Back     alignment and domain information
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A Back     alignment and domain information
>PRK00085 recO DNA repair protein RecO; Reviewed Back     alignment and domain information
>TIGR00613 reco DNA repair protein RecO Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 2e-45
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 1e-44
3fm8_C 392 Crystal Structure Of Full Length Centaurin Alpha-1 2e-22
3feh_A 386 Crystal Structure Of Full Length Centaurin Alpha-1 2e-22
3jue_A 368 Crystal Structure Of Arfgap And Ank Repeat Domain O 2e-21
4f1p_A 368 Crystal Structure Of Mutant S554d For Arfgap And An 2e-21
3t9k_A 390 Crystal Structure Of Acap1 C-portion Mutant S554d F 2e-21
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 1e-17
2b0o_E 301 Crystal Structure Of Uplc1 Gap Domain Length = 301 3e-17
3lvq_E 497 The Crystal Structure Of Asap3 In Complex With Arf6 5e-17
1dcq_A 278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 1e-16
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 3e-16
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 5e-16
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 6e-15
3o47_A 329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 5e-14
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 7e-14
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 7e-14
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 2e-13
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure 
Iteration: 1

 Score =  177 bits (449), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 75/119 (63%), Positives = 98/119 (82%)
Query: 2   SSKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHR 61
            S     + +++ ++ Q +L ++L+++DNKYC DC+AKGPRWASWNIG+F+CIRCAGIHR
Sbjct: 1   GSSGSSGKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHR 60
Query: 62  NLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIR 120
           NLGVHISRVKSVNLD WT EQ+  +Q MGN++AR +YEAN+P+NFRRPQTD  +E FIR
Sbjct: 61  NLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIR 119
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 6e-69
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 1e-66
3jue_A 368 Arfgap with coiled-coil, ANK repeat and PH domain 5e-60
2b0o_E 301 UPLC1; arfgap, structural genomics, structural gen 3e-57
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 3e-57
1dcq_A 278 PYK2-associated protein beta; zinc-binding module, 5e-57
2owa_A138 Arfgap-like finger domain containing protein; zinc 8e-57
3lju_X 386 ARF-GAP with dual PH domain-containing protein 1; 3e-56
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 9e-56
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 3e-52
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 6e-52
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 1e-49
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 3e-40
3o47_A 329 ADP-ribosylation factor GTPase-activating protein 2e-29
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 4e-04
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
 Score =  203 bits (518), Expect = 6e-69
 Identities = 82/139 (58%), Positives = 108/139 (77%)

Query: 3   SKAEKERQKQIQDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRN 62
           S     + +++ ++ Q +L ++L+++DNKYC DC+AKGPRWASWNIG+F+CIRCAGIHRN
Sbjct: 2   SSGSSGKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRN 61

Query: 63  LGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARAVYEANIPDNFRRPQTDSTLEAFIRAK 122
           LGVHISRVKSVNLD WT EQ+  +Q MGN++AR +YEAN+P+NFRRPQTD  +E FIR K
Sbjct: 62  LGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIRDK 121

Query: 123 YEQKKYIASEWVPPVLPKN 141
           YE+KKY     +    P +
Sbjct: 122 YEKKKYYDKNAIAISGPSS 140
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Length = 244 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query145
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
3lju_X 386 ARF-GAP with dual PH domain-containing protein 1; 100.0
3jue_A 368 Arfgap with coiled-coil, ANK repeat and PH domain 100.0
2owa_A138 Arfgap-like finger domain containing protein; zinc 100.0
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 100.0
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 100.0
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 100.0
2b0o_E 301 UPLC1; arfgap, structural genomics, structural gen 100.0
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 100.0
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 100.0
1dcq_A 278 PYK2-associated protein beta; zinc-binding module, 100.0
3o47_A 329 ADP-ribosylation factor GTPase-activating protein 99.97
1gnf_A46 Transcription factor GATA-1; zinc finger, transcri 90.36
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 89.92
2kgo_A108 Uncharacterized protein YBII; Zn finger, partially 86.6
3dfx_A63 Trans-acting T-cell-specific transcription factor 86.33
2vut_I43 AREA, nitrogen regulatory protein AREA; transcript 86.2
1tjl_A151 DNAK suppressor protein; DKSA, transcription facto 86.05
4gat_A66 Nitrogen regulatory protein AREA; DNA binding prot 83.88
4hc9_A115 Trans-acting T-cell-specific transcription factor; 81.6
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=9.1e-49  Score=289.10  Aligned_cols=119  Identities=63%  Similarity=1.210  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHHhhccHH
Q psy5674          14 QDKCQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSR   93 (145)
Q Consensus        14 ~e~~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~~~GN~~   93 (145)
                      +|+++.+|++|+..|+|+.|+|||+++|+|+|+|||||||+.|+|+||.||+|||+||||+||+|++++|+.|+.+||.+
T Consensus        11 ~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~   90 (134)
T 2iqj_A           11 VDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGK   90 (134)
T ss_dssp             --CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCCCCCCCchHHHHHHHHHHhhcccccCC
Q psy5674          94 ARAVYEANIPDNFRRPQTDSTLEAFIRAKYEQKKYIASE  132 (145)
Q Consensus        94 ~n~~~e~~~p~~~~~p~~~~~~~~fI~~KY~~k~f~~~~  132 (145)
                      +|++||+++|+.+.+|++++.+++||++||++++|+.+.
T Consensus        91 an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~  129 (134)
T 2iqj_A           91 ANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRS  129 (134)
T ss_dssp             HHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTT
T ss_pred             HHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCc
Confidence            999999999999888988888999999999999999764
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Back     alignment and structure
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli} Back     alignment and structure
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Back     alignment and structure
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Back     alignment and structure
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S Back     alignment and structure
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Back     alignment and structure
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 145
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 1e-42
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  135 bits (340), Expect = 1e-42
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 4/119 (3%)

Query: 18  QNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDT 77
           + ++ ++ +   N  C DC A  P W S N+GI  CI C+GIHR LGVH SR++S+ LD 
Sbjct: 3   KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 62

Query: 78  WTPEQVVSLQQMGNSRARAVYEANIP-DNFRRPQTDST---LEAFIRAKYEQKKYIASE 132
               +++  + +GN+    + E  +P ++  +P   S     + +I AKY +++Y   +
Sbjct: 63  LGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 121

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query145
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 93.77
d1y0ja139 Erythroid transcription factor GATA-1 {Mouse (Mus 90.17
d1d4ua236 DNA repair factor XPA DNA- and RPA-binding domain, 88.75
d1zbdb_124 Effector domain of rabphilin-3a {Rat (Rattus norve 82.82
d1pfta_50 Transcription initiation factor TFIIB, N-terminal 82.02
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.2e-46  Score=267.69  Aligned_cols=116  Identities=32%  Similarity=0.688  Sum_probs=106.6

Q ss_pred             HHHHHHHHhcCCCCCCccCCCCCCCCeeecccceeeecccccccccCCCccceeeecccCCCCHHHHHHHHhhccHHHHH
Q psy5674          17 CQNLLMQMLKDDDNKYCVDCDAKGPRWASWNIGIFLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVVSLQQMGNSRARA   96 (145)
Q Consensus        17 ~~~~l~~l~~~p~N~~CaDCg~~~p~w~s~~~GvflC~~Cs~iHR~lg~~is~Vksl~ld~w~~~~i~~l~~~GN~~~n~   96 (145)
                      .+++|++|++.|+|++|||||+++|+|||++||||||+.|||+||.||+|||+|||++||+|++++|++|+.+||..+|+
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~   81 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE   81 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCC-CCCCCCc---hHHHHHHHHHHhhcccccCC
Q psy5674          97 VYEANIPDN-FRRPQTD---STLEAFIRAKYEQKKYIASE  132 (145)
Q Consensus        97 ~~e~~~p~~-~~~p~~~---~~~~~fI~~KY~~k~f~~~~  132 (145)
                      +||+++|.. ..+|.++   ..+++||++||++++|+.+.
T Consensus        82 ~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k~  121 (122)
T d1dcqa2          82 IMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK  121 (122)
T ss_dssp             HHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred             HHHhhCCcccCcCCCCCccHHHHHHHHHHHHHhCcccccc
Confidence            999999864 4456543   34799999999999999764
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure