Psyllid ID: psy5718

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720
Protein Sequence
MSNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAGKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDQVTSSQRWPMATKPTSRTDCRHCIT
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEccccccHHHHccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEccHHHHHHHHHcccccccccccccccccccEEcccccEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHcccccccccHHHHHEEcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHcccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEcEEEEEEccccHHHHHccccEcEEEccccccEEEEcccccEEccEEEcccccHHHHHHHHcHHHHcccccccccEHEHHHHHHHHHcccccccccccccccEEEcccccEEEccHHHHHHHHHHHHHHcccccccHHHHHHHcEEEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
msnnapadreiaaeDSIRVVcrfrplnhseekagSKFIvkfpsggeenglslggkfylfdkvfkpnatqekVYDEAAKSIVSVQfvdadqymvSVDRlrsdhqlkaSTMCEHSLMHLivfpgaterfvgkpeEVFEVIEEGKANRHIAVTnmnehssrshSVFLINVKQENLENEKKLSGKLYLVDLAgsekvsktgaegtvlDEAKNINKslsadgagkleEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTaeeseddggslaQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGlvigsegdmkvtsdgagkleEEFTVARLYISKMKwrngetvkedeqvnladpvdmaasiaptpesapasilpaipgsglmlgslsnEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKLfvqdqvtssqrwpmatkptsrtdcrhcit
Flexible Loop (DISEMBL)
msnnapadreiaaedsirvVCRFrplnhseekagskFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNmnehssrshSVFLINVKQENLENEKKLSGKLYLVDLAGSEKvsktgaegtvldeakninkslsadgagkleEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSvtaeeseddggsLAQRQKISFLENNLDQLTKVHKqlvrdnadlrcelpklekrlratmerVKLITTARRDYEQLQGEmtrltqenesakeEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAvnydqksqevETKNKEFETLTeeltlkqttlnttstelqqiKDMSNHQKKRINEMLTNLLKDLCEIGLVIgsegdmkvtsdgagkleeefTVARLYISkmkwrngetvkedeqVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQqldekdeeinQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQtlhnlrklfvqdqvtssqrwpmatkptsrtdcrhcit
Low Complexity Region (SEG)
MSNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPsggeenglslggKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAGKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVetknkefetlteeltlkqttlnttstelqqIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNeerqkleeererlyqqldeKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDQVTSSQRWPMATKPTSRTDCRHCIT
Disordered region (IsUnstruct)
****************IRVVCRFRPLN********KFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVT**********SVFLINVKQ********LSGKLYLVDLA**********************************EEFTVARLYISKMKSEVKNLVA***************************************************KELQTLHNLRKLFVQDLQA*************************FLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTA***********************************************************************************************************************INEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRN************************************************************************************************LVC***********************ELQTLHNLRKLFVQ**************************
Disordered Region (DISOPRED)
******************VVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVDADQYMVSVDRL*****************HLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINV***************YLVDLAGSEK***********DEAKNINKSLSADGAGKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERR*********LE*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************HC**
Disordered Region (DISEMBL)
*********EIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAGKLEEEFTVARLYISKMKSEVKNLVARC***********KKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIK***************AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRL***********KELITTARRDYEQLQGEMTR*************EVLQALEELAVNY*************FETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDQV***********************
Disordered Region (DISPRO)
**********IAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG******************NINKSLSADGAGKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIK*************SLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDQVTSSQR**********TDC**C**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAGKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLxxxxxxxxxxxxxxxxxxxxxxxxxxxxLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSGLLVxxxxxxxxxxxxxxxxxxxxxxxxxxxxLHNLRKLFVQDQVTSSQRWPMATKPTSRTDCRHCIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	720	2.2.26 [Sep-21-2011]
P17210	975	Kinesin heavy chain OS=Dr	yes	N/A	0.734	0.542	0.443	1e-116
P21613	967	Kinesin heavy chain OS=Do	N/A	N/A	0.870	0.648	0.369	3e-98
P35978	1031	Kinesin heavy chain OS=St	yes	N/A	0.279	0.194	0.475	4e-55
P28738	956	Kinesin heavy chain isofo	yes	N/A	0.281	0.212	0.471	1e-54
O60282	957	Kinesin heavy chain isofo	yes	N/A	0.281	0.212	0.467	3e-54
Q12840	1032	Kinesin heavy chain isofo	no	N/A	0.279	0.194	0.453	1e-53
Q5R9K7	1032	Kinesin heavy chain isofo	yes	N/A	0.279	0.194	0.453	1e-53
P33175	1027	Kinesin heavy chain isofo	no	N/A	0.279	0.195	0.453	2e-53
Q6QLM7	1027	Kinesin heavy chain isofo	no	N/A	0.279	0.195	0.45	6e-53
P33176	963	Kinesin-1 heavy chain OS=	no	N/A	0.280	0.209	0.440	3e-50

>sp|P17210|KINH_DROME Kinesin heavy chain OS=Drosophila melanogaster GN=Khc PE=1 SV=2

 Score =  421 bits (1081), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 284/640 (44%), Positives = 360/640 (56%), Gaps = 111/640 (17%)

Query: 7   ADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFD------ 60
           A+REI AEDSI+VVCRFRPLN SEEKAGSKF+VKFP+  EEN +S+ GK YLFD      
Sbjct: 3   AEREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPN 62

Query: 61  ----KVFKPNA---------------------------TQEKVYDEAAKS-----IVSVQ 84
               KV+   A                           T E V  ++ K      IV+  
Sbjct: 63  ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDI 122

Query: 85  F-------------VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGK 130
           F             +    Y + +D++R    +    +  H   + + +  GATERFV  
Sbjct: 123 FNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSS 182

Query: 131 PEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGS 190
           PE+VFEVIEEGK+NRHIAVTNMNEHSSRSHSVFLINVKQENLEN+KKLSGKLYLVDLAGS
Sbjct: 183 PEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGS 242

Query: 191 EKVSKTGAEGTVLDEAKNINKSLSADG--------AGKLEEEF---TVARLYISKMKSEV 239
           EKVSKTGAEGTVLDEAKNINKSLSA G          K    +    + R+    +    
Sbjct: 243 EKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNA 302

Query: 240 KNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE--------RREQARKD----L 287
           +  +  C S  S    E K  +++ +     + ++  NE        RR +  K+    L
Sbjct: 303 RTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNARL 362

Query: 288 KGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQ 347
           KG              + KL ++  + R  ++V AEE       +     +     NL+ 
Sbjct: 363 KG-------------KVEKLEIELARWRAGETVKAEE------QINMEDLMEASTPNLEV 403

Query: 348 LTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQG---EMTRLTQEN 404
                       A  R  L  +   + A  E+ +L T   R Y+QL     E+ + +Q  
Sbjct: 404 EAAQTAAAEAALAAQRTALANMSASV-AVNEQARLATECERLYQQLDDKDEEINQQSQYA 462

Query: 405 ESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKS 461
           E  KE+V   +ELI  ARR+YE LQ EM R+ QENESAKEEVKEVLQALEELAVNYDQKS
Sbjct: 463 EQLKEQVMEQEELIANARREYETLQSEMARIQQENESAKEEVKEVLQALEELAVNYDQKS 522

Query: 462 QEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIG 521
           QE++ KNK+ + L EEL  KQ+  N  STELQQ+KDMS+HQKKRI EMLTNLL+DL E+G
Sbjct: 523 QEIDNKNKDIDALNEELQQKQSVFNAASTELQQLKDMSSHQKKRITEMLTNLLRDLGEVG 582

Query: 522 LVIG---SEGDMKVTS---DGAGKLEEEFTVARLYISKMK 555
             I    S  D+K+++     A K+EE+FT+ARL+ISKMK
Sbjct: 583 QAIAPGESSIDLKMSALAGTDASKVEEDFTMARLFISKMK 622

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. Milt and Miro form an essential protein complex that links Khc to mitochondria for light chain-independent, anterograde transport of mitochondria.
Drosophila melanogaster (taxid: 7227)

>sp|P21613|KINH_DORPE Kinesin heavy chain OS=Doryteuthis pealeii PE=2 SV=1

 Score =  360 bits (923), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 290/784 (36%), Positives = 406/784 (51%), Gaps = 157/784 (20%)

Query: 10  EIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKF------------- 56
           ++A+E +I+V+CR RPLN +EE+AGSKFI+KFP+   ++ +S+ GK              
Sbjct: 2   DVASECNIKVICRVRPLNEAEERAGSKFILKFPT---DDSISIAGKVFVFDKVLKPNVSQ 58

Query: 57  -YLFDKVFKP-----------------------NATQEKVYDEAA-----KSIVSVQF-- 85
            Y+++   KP                         T E V D+ +       IV   F  
Sbjct: 59  EYVYNVGAKPIVADVLSGCNGTIFAYGQTSSGKTHTMEGVLDKPSMHGIIPRIVQDIFNY 118

Query: 86  -----------VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEE 133
                      +    Y + +D++R    +  + +  H   + + F  GATERFV  PEE
Sbjct: 119 IYGMDENLEFHIKISYYEIYLDKIRDLLDVTKTNLAVHEDKNRVPFVKGATERFVSSPEE 178

Query: 134 VFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKV 193
           V EVI+EGK NRH+AVTNMNEHSSRSHSVFLINVKQEN+E +KKLSGKLYLVDLAGSEKV
Sbjct: 179 VMEVIDEGKNNRHVAVTNMNEHSSRSHSVFLINVKQENVETQKKLSGKLYLVDLAGSEKV 238

Query: 194 SKTGAEGTVLDEAKNINKSLSADG--------AGKLEEEF---TVARLYISKMKSEVKNL 242
           SKTGAEG VLDEAKNINKSLSA G          K    +    + R+    +    +  
Sbjct: 239 SKTGAEGAVLDEAKNINKSLSALGNVISALADGNKSHVPYRDSKLTRILQESLGGNARTT 298

Query: 243 VARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE---------RREQARKDLKGLEDT 293
           +  C S  S    E K  + + +     + ++  NE         R E+ ++ +  L+ T
Sbjct: 299 MVICCSPASYNESETKSTLLFGQRAKTIKNVVSVNEELTADEWKRRYEKEKERVTKLKAT 358

Query: 294 VTK---ELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQL-- 348
           + K   ELQ     + + V++ Q  +K+ V AE       SLA     S  E +  QL  
Sbjct: 359 MAKLEAELQRWRTGQAVSVEE-QVDLKEDVPAESPATSTTSLAGGLIASMNEGDRTQLEE 417

Query: 349 --TKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENES 406
              K+++QL   + ++  +   +EK     ME+  LI  +RRDYE LQ +M+R+  +NES
Sbjct: 418 ERLKLYQQLDDKDDEINNQSQLIEKLKEQMMEQEDLIAQSRRDYENLQQDMSRIQADNES 477

Query: 407 AKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVET 466
           AK+E                                VKEVLQALEELA+NYDQKSQEVE 
Sbjct: 478 AKDE--------------------------------VKEVLQALEELAMNYDQKSQEVED 505

Query: 467 KNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVI-G 525
           KNKE E L+EEL  K +TLN+   EL Q+KD S H +KR+ +M+ NLLKDL +IG ++ G
Sbjct: 506 KNKENENLSEELNQKLSTLNSLQNELDQLKDSSMHHRKRVTDMMINLLKDLGDIGTIVGG 565

Query: 526 SEGDMKVTSDGAGKLEEEFTVARLYISKMK-------WRNGETVKEDEQVNL----ADPV 574
           +  + K T+    K+EEEFTVARLYISKMK        RN + ++  +Q N         
Sbjct: 566 NAAETKPTAGSGEKIEEEFTVARLYISKMKSEVKTLVSRNNQ-LENTQQDNFKKIETHEK 624

Query: 575 DMAAS--IAPTPESAPASILPAIPGS---GLML----GSLSNEERQKLEEERERLYQQLD 625
           D++    +    E+  AS+  AI  S     ML     SL NEE  KL+ + +     L 
Sbjct: 625 DLSNCKLLIQQHEAKMASLQEAIKDSENKKRMLEDNVDSL-NEEYAKLKAQEQMHLAALS 683

Query: 626 EKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTL 685
           E+++E +Q S+  E L++Q ME                REQ +K L+ L D ++++  T+
Sbjct: 684 EREKETSQASETREVLEKQ-MEM--------------HREQHQKQLQSLRDEISEKQATV 728

Query: 686 HNLR 689
            NL+
Sbjct: 729 DNLK 732

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport.

Loligo pealeii (taxid: 1051067)

>sp|P35978|KINH_STRPU Kinesin heavy chain OS=Strongylocentrotus purpuratus PE=2 SV=1

 Score =  216 bits (551), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 124/261 (47%), Positives = 152/261 (58%), Gaps = 60/261 (22%)

Query: 13  AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKV 72
           AE +I+VVCR RP+N +E+   S    KF S   E  + +GGK  +FD++FKPN TQE+V
Sbjct: 5   AECNIKVVCRVRPMNATEQNT-SHICTKFIS---EEQVQIGGKLNMFDRIFKPNTTQEEV 60

Query: 73  YDEA------------------------AKSIVSVQFVDADQYM---------------- 92
           Y++A                         K+      +   QYM                
Sbjct: 61  YNKAARQIVKDVLDGYNGTIFAYGQTSSGKTFTMEGVMGNPQYMGIIPRIVQDIFNHIYQ 120

Query: 93  ---------------VSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFE 136
                          + +DR+R    +  + +  H   + + F  GATERF   PEEV +
Sbjct: 121 MDESLEFHIKVSYFEIYMDRIRDLLDVSKTNLSVHEDKNRVPFVKGATERFASSPEEVMD 180

Query: 137 VIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKT 196
           VIEEGK+NRHIAVTNMNEHSSRSHS+FLI VKQEN+E +KKLSGKLYLVDLAGSEKVSKT
Sbjct: 181 VIEEGKSNRHIAVTNMNEHSSRSHSIFLIQVKQENMETKKKLSGKLYLVDLAGSEKVSKT 240

Query: 197 GAEGTVLDEAKNINKSLSADG 217
           GAEGTVLDEAKNINKSLSA G
Sbjct: 241 GAEGTVLDEAKNINKSLSALG 261

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport.

Strongylocentrotus purpuratus (taxid: 7668)

>sp|P28738|KIF5C_MOUSE Kinesin heavy chain isoform 5C OS=Mus musculus GN=Kif5c PE=1 SV=3

 Score =  215 bits (547), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/261 (47%), Positives = 153/261 (58%), Gaps = 58/261 (22%)

Query: 13  AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQE-- 70
           AE SI+V+CRFRPLN +E   G KFI KF   GEE  +   GK Y+FD+V  PN TQE  
Sbjct: 5   AECSIKVMCRFRPLNEAEILRGDKFIPKFK--GEETVVIGQGKPYVFDRVLPPNTTQEQV 62

Query: 71  ------------------------------------KVYDEAAKSIV------------- 81
                                               K++D     I+             
Sbjct: 63  YNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYS 122

Query: 82  ---SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFE 136
              +++F +    + + +D++R    +  + +  H   + + +  G TERFV  PEEV +
Sbjct: 123 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMD 182

Query: 137 VIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKT 196
           VI+EGKANRH+AVTNMNEHSSRSHS+FLIN+KQEN+E EKKLSGKLYLVDLAGSEKVSKT
Sbjct: 183 VIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKVSKT 242

Query: 197 GAEGTVLDEAKNINKSLSADG 217
           GAEG VLDEAKNINKSLSA G
Sbjct: 243 GAEGAVLDEAKNINKSLSALG 263

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport.

Mus musculus (taxid: 10090)

>sp|O60282|KIF5C_HUMAN Kinesin heavy chain isoform 5C OS=Homo sapiens GN=KIF5C PE=1 SV=1

 Score =  214 bits (544), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 122/261 (46%), Positives = 153/261 (58%), Gaps = 58/261 (22%)

Query: 13  AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQE-- 70
           AE SI+V+CRFRPLN +E   G KFI KF   G+E  +   GK Y+FD+V  PN TQE  
Sbjct: 5   AECSIKVMCRFRPLNEAEILRGDKFIPKFK--GDETVVIGQGKPYVFDRVLPPNTTQEQV 62

Query: 71  ------------------------------------KVYDEAAKSIV------------- 81
                                               K++D     I+             
Sbjct: 63  YNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYS 122

Query: 82  ---SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFE 136
              +++F +    + + +D++R    +  + +  H   + + +  G TERFV  PEEV +
Sbjct: 123 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMD 182

Query: 137 VIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKT 196
           VI+EGKANRH+AVTNMNEHSSRSHS+FLIN+KQEN+E EKKLSGKLYLVDLAGSEKVSKT
Sbjct: 183 VIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKVSKT 242

Query: 197 GAEGTVLDEAKNINKSLSADG 217
           GAEG VLDEAKNINKSLSA G
Sbjct: 243 GAEGAVLDEAKNINKSLSALG 263

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport.

Homo sapiens (taxid: 9606)

>sp|Q12840|KIF5A_HUMAN Kinesin heavy chain isoform 5A OS=Homo sapiens GN=KIF5A PE=1 SV=2

 Score =  211 bits (538), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/260 (45%), Positives = 153/260 (58%), Gaps = 59/260 (22%)

Query: 14  EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQE--- 70
           E SI+V+CRFRPLN +E   G KFI  F     ++ + +GGK Y+FD+VF PN TQE   
Sbjct: 7   ECSIKVLCRFRPLNQAEILRGDKFIPIFQG---DDSVVIGGKPYVFDRVFPPNTTQEQVY 63

Query: 71  -----------------------------------KVYDEAAKSIV-------------- 81
                                              K++D     I+              
Sbjct: 64  HACAMQIVKDVLAGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIARDIFNHIYSM 123

Query: 82  --SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFEV 137
             +++F +    + + +D++R    +  + +  H   + + F  G TERFV  PEE+ +V
Sbjct: 124 DENLEFHIKVSYFEIYLDKIRDLLDVTKTNLSVHEDKNRVPFVKGCTERFVSSPEEILDV 183

Query: 138 IEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTG 197
           I+EGK+NRH+AVTNMNEHSSRSHS+FLIN+KQEN+E E+KLSGKLYLVDLAGSEKVSKTG
Sbjct: 184 IDEGKSNRHVAVTNMNEHSSRSHSIFLINIKQENMETEQKLSGKLYLVDLAGSEKVSKTG 243

Query: 198 AEGTVLDEAKNINKSLSADG 217
           AEG VLDEAKNINKSLSA G
Sbjct: 244 AEGAVLDEAKNINKSLSALG 263

Microtubule-dependent motor required for slow axonal transport of neurofilament proteins (NFH, NFM and NFL).

Homo sapiens (taxid: 9606)

>sp|Q5R9K7|KIF5A_PONAB Kinesin heavy chain isoform 5A OS=Pongo abelii GN=KIF5A PE=2 SV=1

 Score =  211 bits (538), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/260 (45%), Positives = 153/260 (58%), Gaps = 59/260 (22%)

Query: 14  EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQE--- 70
           E SI+V+CRFRPLN +E   G KFI  F     ++ + +GGK Y+FD+VF PN TQE   
Sbjct: 7   ECSIKVLCRFRPLNQAEILRGDKFIPIFQG---DDSVVIGGKPYVFDRVFPPNTTQEQVY 63

Query: 71  -----------------------------------KVYDEAAKSIV-------------- 81
                                              K++D     I+              
Sbjct: 64  HACAMQIVKDVLAGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIARDIFNHIYSM 123

Query: 82  --SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFEV 137
             +++F +    + + +D++R    +  + +  H   + + F  G TERFV  PEE+ +V
Sbjct: 124 DENLEFHIKVSYFEIYLDKIRDLLDVTKTNLSVHEDKNRVPFVKGCTERFVSGPEEILDV 183

Query: 138 IEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTG 197
           I+EGK+NRH+AVTNMNEHSSRSHS+FLIN+KQEN+E E+KLSGKLYLVDLAGSEKVSKTG
Sbjct: 184 IDEGKSNRHVAVTNMNEHSSRSHSIFLINIKQENMETEQKLSGKLYLVDLAGSEKVSKTG 243

Query: 198 AEGTVLDEAKNINKSLSADG 217
           AEG VLDEAKNINKSLSA G
Sbjct: 244 AEGAVLDEAKNINKSLSALG 263

Microtubule-dependent motor required for slow axonal transport of neurofilament proteins (NFH, NFM and NFL).

Pongo abelii (taxid: 9601)

>sp|P33175|KIF5A_MOUSE Kinesin heavy chain isoform 5A OS=Mus musculus GN=Kif5a PE=1 SV=3

 Score =  211 bits (537), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/260 (45%), Positives = 153/260 (58%), Gaps = 59/260 (22%)

Query: 14  EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQE--- 70
           E SI+V+CRFRPLN +E   G KFI  F     ++ + +GGK Y+FD+VF PN TQE   
Sbjct: 7   ECSIKVLCRFRPLNQAEILRGDKFIPIFQG---DDSVIIGGKPYVFDRVFPPNTTQEQVY 63

Query: 71  -----------------------------------KVYDEAAKSIV-------------- 81
                                              K++D     I+              
Sbjct: 64  HACAMQIVKDVLAGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIARDIFNHIYSM 123

Query: 82  --SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFEV 137
             +++F +    + + +D++R    +  + +  H   + + F  G TERFV  PEE+ +V
Sbjct: 124 DENLEFHIKVSYFEIYLDKIRDLLDVTKTNLSVHEDKNRVPFVKGCTERFVSSPEEILDV 183

Query: 138 IEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTG 197
           I+EGK+NRH+AVTNMNEHSSRSHS+FLIN+KQEN+E E+KLSGKLYLVDLAGSEKVSKTG
Sbjct: 184 IDEGKSNRHVAVTNMNEHSSRSHSIFLINIKQENVETEQKLSGKLYLVDLAGSEKVSKTG 243

Query: 198 AEGTVLDEAKNINKSLSADG 217
           AEG VLDEAKNINKSLSA G
Sbjct: 244 AEGAVLDEAKNINKSLSALG 263

Microtubule-dependent motor required for slow axonal transport of neurofilament proteins (NFH, NFM and NFL).

Mus musculus (taxid: 10090)

>sp|Q6QLM7|KIF5A_RAT Kinesin heavy chain isoform 5A OS=Rattus norvegicus GN=Kif5a PE=1 SV=1

 Score =  209 bits (532), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 117/260 (45%), Positives = 152/260 (58%), Gaps = 59/260 (22%)

Query: 14  EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQE--- 70
           E SI+V+CRFRPLN +E   G KFI  F     ++ + +GGK Y+FD+VF PN TQE   
Sbjct: 7   ECSIKVLCRFRPLNQAEILRGDKFIPIFQG---DDSVIIGGKPYVFDRVFPPNTTQEQVY 63

Query: 71  -----------------------------------KVYDEAAKSIV-------------- 81
                                              K++D     I+              
Sbjct: 64  HACAMQIVKDVLAGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIARDIFNHIYSM 123

Query: 82  --SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFP-GATERFVGKPEEVFEV 137
             +++F +    + + +D++R    +  + +  H   + + F  G TERFV  PEE+ +V
Sbjct: 124 DENLEFHIKVSYFEIYLDKIRDLLDVTKTNLSVHEDKNRVPFVRGCTERFVSSPEEILDV 183

Query: 138 IEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTG 197
           I+EGK+NRH+AVTNMNEHSSRSHS+FLIN+KQEN+E E+KLSGKLYL DLAGSEKVSKTG
Sbjct: 184 IDEGKSNRHVAVTNMNEHSSRSHSIFLINIKQENIETEQKLSGKLYLADLAGSEKVSKTG 243

Query: 198 AEGTVLDEAKNINKSLSADG 217
           AEG VLDEAKNINKSLSA G
Sbjct: 244 AEGAVLDEAKNINKSLSALG 263

Microtubule-dependent motor required for slow axonal transport of neurofilament proteins (NFH, NFM and NFL).

Rattus norvegicus (taxid: 10116)

>sp|P33176|KINH_HUMAN Kinesin-1 heavy chain OS=Homo sapiens GN=KIF5B PE=1 SV=1

 Score =  200 bits (509), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 115/261 (44%), Positives = 147/261 (56%), Gaps = 59/261 (22%)

Query: 13  AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQE-- 70
           AE +I+V+CRFRPLN SE   G K+I KF     E+ + +  K Y FD+VF+ + +QE  
Sbjct: 5   AECNIKVMCRFRPLNESEVNRGDKYIAKFQG---EDTVVIASKPYAFDRVFQSSTSQEQV 61

Query: 71  ------------------------------------KVYDEAAKSIVSVQFVDADQYMVS 94
                                               K++D     I+     D   Y+ S
Sbjct: 62  YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYS 121

Query: 95  -----------------VDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFE 136
                            +D++R    +  + +  H   + + +  G TERFV  P+EV +
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMD 181

Query: 137 VIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKT 196
            I+EGK+NRH+AVTNMNEHSSRSHS+FLINVKQEN + E+KLSGKLYLVDLAGSEKVSKT
Sbjct: 182 TIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKT 241

Query: 197 GAEGTVLDEAKNINKSLSADG 217
           GAEG VLDEAKNINKSLSA G
Sbjct: 242 GAEGAVLDEAKNINKSLSALG 262

Microtubule-dependent motor required for normal distribution of mitochondria and lysosomes.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	720
198456881	972	GA20572 [Drosophila pseudoobscura pseudo	0.740	0.548	0.462	1e-124
242023696	952	Kinesin heavy chain, putative [Pediculus	0.75	0.567	0.464	1e-122
328712810	979	PREDICTED: kinesin heavy chain-like [Acy	0.709	0.521	0.443	1e-122
312383445	1139	hypothetical protein AND_03432 [Anophele	0.718	0.453	0.446	1e-121
270014227	982	kinesin heavy chain [Tribolium castaneum	0.726	0.532	0.466	1e-121
119113501	983	AGAP000561-PA [Anopheles gambiae str. PE	0.711	0.520	0.445	1e-120
189241456	1101	PREDICTED: similar to Kinesin heavy chai	0.726	0.475	0.466	1e-120
195150115	1211	GL11356 [Drosophila persimilis] gi|19410	0.727	0.432	0.456	1e-120
194757261	977	GF11276 [Drosophila ananassae] gi|190622	0.731	0.539	0.454	1e-117
332017463	969	Kinesin heavy chain [Acromyrmex echinati	0.718	0.533	0.440	1e-116

>gi|198456881|ref|XP_001360474.2| GA20572 [Drosophila pseudoobscura pseudoobscura] gi|198135786|gb|EAL25049.2| GA20572 [Drosophila pseudoobscura pseudoobscura]

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 294/636 (46%), Positives = 370/636 (58%), Gaps = 103/636 (16%)

Query: 7   ADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPN 66
           A+REI AEDSI+VVCRFRPLN SEEKAGSKF+VKFP+  EEN +S+ GK YLFDKVFKPN
Sbjct: 3   AEREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPN 62

Query: 67  ATQEKVY--------------------------------------DEAAKSI-------- 80
           A+QEKVY                                      D A + I        
Sbjct: 63  ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSAKQGIIPRIVNDI 122

Query: 81  --------VSVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGK 130
                   V+++F +    Y + +D++R    +    +  H   + + +  GATERFV  
Sbjct: 123 FNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSS 182

Query: 131 PEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGS 190
           PE+VFEVIEEGK+NRHIAVTNMNEHSSRSHSVFLINVKQENLEN+KKLSGKLYLVDLAGS
Sbjct: 183 PEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGS 242

Query: 191 EKVSKTGAEGTVLDEAKNINKSLSADG--------AGKLEEEF---TVARLYISKMKSEV 239
           EKVSKTGAEGTVLDEAKNINKSLSA G          K    +    + R+    +    
Sbjct: 243 EKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNA 302

Query: 240 KNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE--------RREQARKDLKGLE 291
           +  +  C S  S    E K  +++ +     + ++  NE        RR +  K+  G  
Sbjct: 303 RTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNG-- 360

Query: 292 DTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKV 351
                  +    + KL ++  + R  ++V AEE       +     +     NL+     
Sbjct: 361 -------RLKGKVEKLEIELARWRAGETVKAEE------QINMEDLMEASTPNLEVEAAQ 407

Query: 352 HKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQG---EMTRLTQENESAK 408
            K     +A  R  L  +   + A  ER +L T   R Y+QL     E+ + +Q  E  K
Sbjct: 408 QKAAEAASAAQRTALANMSASVAAD-ERARLATECERLYQQLDDKDEEINQQSQYAEQMK 466

Query: 409 EEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVE 465
           E+V   +ELI  ARR+YE LQ EM R+ QENESAKEEVKEVLQALEELAVNYDQKSQE++
Sbjct: 467 EQVMEQEELIANARREYEALQSEMARIQQENESAKEEVKEVLQALEELAVNYDQKSQEID 526

Query: 466 TKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIG 525
            KNK+ + L EEL  KQT  N TSTELQQ+KDMS+HQKKRI EMLTNLL+DL E+G  I 
Sbjct: 527 NKNKDIDALNEELQQKQTVFNATSTELQQLKDMSSHQKKRITEMLTNLLRDLGEVGQAIA 586

Query: 526 ---SEGDMKVTS---DGAGKLEEEFTVARLYISKMK 555
              S  D+K+++     A K+EE+FT+ARLYISKMK
Sbjct: 587 PGDSAIDLKMSTLAGTDATKVEEDFTMARLYISKMK 622

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023696|ref|XP_002432267.1| Kinesin heavy chain, putative [Pediculus humanus corporis] gi|212517676|gb|EEB19529.1| Kinesin heavy chain, putative [Pediculus humanus corporis]

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 292/629 (46%), Positives = 366/629 (58%), Gaps = 89/629 (14%)

Query: 1   MSNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLF- 59
           M+ +   +REIAAEDSI+VVCRFRPLN SEEKAGSKFIVKFPSG +EN +++GGK YLF 
Sbjct: 1   MNQSIVGEREIAAEDSIKVVCRFRPLNDSEEKAGSKFIVKFPSGNDENCITIGGKVYLFD 60

Query: 60  ---------DKVFKPNA---------------------------TQEKVY-DEAAKSIV- 81
                    DKV+   A                           T E V  D   + I+ 
Sbjct: 61  KVFKPNATQDKVYDDAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVLGDSQTQGIIP 120

Query: 82  ---------------SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGAT 124
                          +++F +    + + +D++R    +  + +  H   + + F  GAT
Sbjct: 121 RIVNDIFNHIYLMEENLEFHIKISYFEIYMDKIRDLLDVSKTNLSVHEDKNRVPFVKGAT 180

Query: 125 ERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYL 184
           ERFV  P+EVFE IEEGKANRH+AVTNMNEHSSRSHSVFLINVKQENLE +KKLSGKLYL
Sbjct: 181 ERFVANPDEVFEAIEEGKANRHVAVTNMNEHSSRSHSVFLINVKQENLEIQKKLSGKLYL 240

Query: 185 VDLAGSEKVSKTGAEGTVLDEAKNINKSLS---------ADGAGKLEEEF---TVARLYI 232
           VDLAGSEKVSKTGAEG VLDEAKNINKSLS         ADG  K    +    + R+  
Sbjct: 241 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALADG-NKTHIPYRDSKLTRILQ 299

Query: 233 SKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLED 292
             +    +  +  C S  S    E K  +E+ K     + ++  NE             +
Sbjct: 300 ESLGGNARTTIIICCSPASFNEAETKSTLEFGKRAKTIKNVVCVNE-------------E 346

Query: 293 TVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVH 352
              +E +  +   K      +A+ +K +  E S    G   + ++   L+  LD  T V 
Sbjct: 347 LTAEEWKRRYEREKEKAAKWRAKCEK-LELELSRWRAGETVKPEEQVNLQEPLDSTTPVS 405

Query: 353 KQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQG---EMTRLTQENESAKE 409
                    +      L     +  ER KL     R Y+QL     E+ + +Q  E  KE
Sbjct: 406 ALPDGKKGPMPATPSGLMIGSLSNEERQKLEEERERLYQQLDDKDEEINQTSQYVEKLKE 465

Query: 410 EV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVET 466
           ++   +ELIT+ RRDYE LQ EMTR+ QENESAKEEVKEVLQALEELA+NYDQKSQEVET
Sbjct: 466 QMLEQEELITSTRRDYELLQQEMTRIQQENESAKEEVKEVLQALEELAMNYDQKSQEVET 525

Query: 467 KNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGS 526
           KNKE++T+ EEL+ KQT LN TS+ELQQ+KDM  HQ++RI EMLTNLLKDL EIG  IG 
Sbjct: 526 KNKEYDTINEELSKKQTLLNNTSSELQQMKDMWTHQRRRITEMLTNLLKDLGEIGEAIGG 585

Query: 527 EGDMKVTSDGAGKLEEEFTVARLYISKMK 555
           +GDMK+  D  GK+EEEFTVARLYISKMK
Sbjct: 586 DGDMKLNPDTVGKIEEEFTVARLYISKMK 614

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712810|ref|XP_001944740.2| PREDICTED: kinesin heavy chain-like [Acyrthosiphon pisum]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 289/651 (44%), Positives = 376/651 (57%), Gaps = 140/651 (21%)

Query: 7   ADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPN 66
           A+REIAAEDSI+VVCRFRPLN SEEKAGS+F+VKFP+G +EN +++GGK YLFDKVFKPN
Sbjct: 3   AEREIAAEDSIKVVCRFRPLNDSEEKAGSRFVVKFPTGPDENCITIGGKVYLFDKVFKPN 62

Query: 67  ATQEK--------------------------------------VYDEAAKSIV------- 81
           A+Q+K                                      + D + + I+       
Sbjct: 63  ASQDKVYGDAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDPSKQGIIPRIVNDI 122

Query: 82  ---------SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGK 130
                    +++F +    + + +D++R    +    +  H   + + F  GATERFV  
Sbjct: 123 FNHIYAMEENLEFHIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKGATERFVSS 182

Query: 131 PEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGS 190
           PEEVF VIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGS
Sbjct: 183 PEEVFAVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGS 242

Query: 191 EKVSKTGAEGTVLDEAKNINKSLSADG---AGKLEEEFT--------VARLYISKMKSEV 239
           EKVSKTGAEGTVLDEAKNINKSLSA G   +   E++ T        + R+    +    
Sbjct: 243 EKVSKTGAEGTVLDEAKNINKSLSALGNVISALAEDKKTHIPYRDSKLTRILQESLGGNA 302

Query: 240 KNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE--------RREQARKD----L 287
           +  +  C S  S    E K  +++ +     + ++  NE        RR +  K+     
Sbjct: 303 RTTIIICCSPASFNESETKSTLDFGRRAKTIKNVITVNEELTAEEWKRRYEKEKEKCTRY 362

Query: 288 KGLEDTVTKEL------QTLHNLRKLFVQ--------DLQARIKKS-VTAEESEDDGG-- 330
           K   D +  EL      +T+    ++ +Q        ++Q  IKK  V        GG  
Sbjct: 363 KAKCDKLQTELNRWRCGETVKEDEQVNLQEPMEASTPNVQVDIKKELVVGPVPAIPGGVM 422

Query: 331 ----SLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTA 386
               S  +RQK+       ++   +++QL   + ++  +   +EK     ME+ +L+T+ 
Sbjct: 423 TESMSTEERQKLE------EEREALYQQLDDKDEEINQQSQDIEKLKEQIMEQEELLTST 476

Query: 387 RRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 446
           +RDYEQLQ EM R+TQENESAKEE                                VKEV
Sbjct: 477 QRDYEQLQQEMHRITQENESAKEE--------------------------------VKEV 504

Query: 447 LQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRI 506
           LQALEELAVNYDQKSQEV+ KNKE ETL EEL++K+++LN+TS+ELQQ+KDM  HQKKR 
Sbjct: 505 LQALEELAVNYDQKSQEVDVKNKENETLMEELSIKESSLNSTSSELQQLKDMFVHQKKRT 564

Query: 507 NEMLTNLLKDLCEIGLVIGSEGDM--KVTSDGAGKLEEEFTVARLYISKMK 555
            +ML+NLLKD+ EIG  IGSE ++  +  SDG  KL+EEFTVARLYISKMK
Sbjct: 565 TDMLSNLLKDIAEIGAAIGSEAELNQQAISDGNSKLDEEFTVARLYISKMK 615

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312383445|gb|EFR28533.1| hypothetical protein AND_03432 [Anopheles darlingi]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 288/645 (44%), Positives = 369/645 (57%), Gaps = 128/645 (19%)

Query: 7   ADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPN 66
           A REI AEDSI+VVCRFRPLN SEE AGS+F+VKFP+G EEN LS+GGK YLFDKVFKPN
Sbjct: 58  AIREIPAEDSIKVVCRFRPLNDSEELAGSRFVVKFPTGPEENCLSIGGKVYLFDKVFKPN 117

Query: 67  ATQEKVYDE--------------------------------------AAKSIV------- 81
           ATQEKVY+E                                      A + I+       
Sbjct: 118 ATQEKVYNEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDPAKQGIIPRIVNDI 177

Query: 82  ---------SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGK 130
                    +++F +    Y + +D++R    +    +  H   + + +  GATERFV  
Sbjct: 178 FNHIFTMEMNIEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSS 237

Query: 131 PEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGS 190
           PE+VFEVIEEGK+NRHIAVTNMNEHSSRSHSVFLINVKQEN+ENEKKLSGKLYLVDLAGS
Sbjct: 238 PEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENMENEKKLSGKLYLVDLAGS 297

Query: 191 EKVSKTGAEGTVLDEAKNINKSLSADG--------AGKLEEEF---TVARLYISKMKSEV 239
           EKVSKTGAEGTVLDEAKNINKSLSA G          K    +    + R+    +    
Sbjct: 298 EKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNA 357

Query: 240 KNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE--------RREQARKD----L 287
           +  +  C S  S    E K  +++ +     + ++  NE        RR +  K+    L
Sbjct: 358 RTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEREKEKNTKL 417

Query: 288 KGLEDTVTKELQTLHNLRKLFVQ---DLQARIKKSVTAEESE---DDGGSL--------A 333
           KG  + +  EL        + V+   DLQ    ++ T          GG L        A
Sbjct: 418 KGKIEMLEAELARWRAGETVNVEEQLDLQQDAMEASTPNVEALLLVQGGDLPVPATPGGA 477

Query: 334 QRQKISFLENNLD-QLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQ 392
               +S   + LD +  ++++QL   + ++  +   +EK     +++ +LI   RRDYE 
Sbjct: 478 PGLPLSAERDTLDGERERLYQQLDEKDEEINQQSQYVEKLKEQIIDQEELIANTRRDYEN 537

Query: 393 LQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452
           LQ EMTR+ QENE+AKE                                EVKEVLQALEE
Sbjct: 538 LQSEMTRIQQENENAKE--------------------------------EVKEVLQALEE 565

Query: 453 LAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTN 512
           LAVNYDQKSQE+E KNKE +T+ +EL +KQTTLN+  +ELQQ+KDMS+HQKKRINEMLTN
Sbjct: 566 LAVNYDQKSQEIELKNKEIDTVNDELLVKQTTLNSVQSELQQLKDMSSHQKKRINEMLTN 625

Query: 513 LLKDLCEIGLVIGSE-GDMKVTSDG-AGKLEEEFTVARLYISKMK 555
           LL+DL E+G  + ++  +MK+  +  AGK+EEEFTVARLYISKMK
Sbjct: 626 LLRDLSEVGQALAADQSEMKMNVEASAGKVEEEFTVARLYISKMK 670

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014227|gb|EFA10675.1| kinesin heavy chain [Tribolium castaneum]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 297/637 (46%), Positives = 371/637 (58%), Gaps = 114/637 (17%)

Query: 7   ADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFD------ 60
            DREI AEDSI+VVCRFRPLN SEEKAGSKFIVKFPSGGE+N +S+ GK YLFD      
Sbjct: 3   GDREIPAEDSIKVVCRFRPLNDSEEKAGSKFIVKFPSGGEDNCISIAGKVYLFDKVFKPN 62

Query: 61  ----KVFKPNA---------------------------TQEKVYDEAAKS-----IVSVQ 84
               KV+   A                           T E V  +  K      IV+  
Sbjct: 63  ATQEKVYNEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDPQKQGIIPRIVNDI 122

Query: 85  F-------------VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGK 130
           F             +    + + +D++R    +    +  H   + + +  GATERFV  
Sbjct: 123 FNHIYAMEENLEFHIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSS 182

Query: 131 PEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGS 190
           PEEVFE IEEGK+NRHIAVTNMNEHSSRSHSVFLINVKQENLEN+KKLSGKLYLVDLAGS
Sbjct: 183 PEEVFESIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGS 242

Query: 191 EKVSKTGAEGTVLDEAKNINKSLSADG--------AGKLEEEF---TVARLYISKMKSEV 239
           EKVSKTGAEGTVLDEAKNINKSLSA G          K    +    + R+    +    
Sbjct: 243 EKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNA 302

Query: 240 KNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE--------RREQARKD----L 287
           +  +  C S  S    E K  +++ K     + ++  NE        RR +  K+    L
Sbjct: 303 RTTIVICCSPASFNESETKSTLDFGKRAKTVKNVVCVNEELTAEEWKRRYEKEKEKVARL 362

Query: 288 KGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQ 347
           KG  + +  ELQ             + R  ++V AEE  +          +S +E     
Sbjct: 363 KGKVEKLESELQ-------------RWRAGETVKAEEQVNLNELTEAVTPVSGMEE---- 405

Query: 348 LTKVHKQ--LVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQG---EMTRLTQ 402
            + V KQ  +    A +      +E+R +  +ER +L       Y+QL     E+   +Q
Sbjct: 406 -STVEKQGPVPATPALMIGSTLDVEERRKLELERERL-------YQQLDEKDEEINEQSQ 457

Query: 403 ENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQ 459
             E  KE++    ELI + RRDYE LQ EM R+ QENESAKEEVKEVLQALEELAVNYDQ
Sbjct: 458 YVEKLKEQMLEQDELIASTRRDYEALQAEMNRIQQENESAKEEVKEVLQALEELAVNYDQ 517

Query: 460 KSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCE 519
           KSQEV+ KNKE ETL+EEL  KQ +LNTT+TELQQ++DMS+HQKKRI EML+NLLK+L E
Sbjct: 518 KSQEVDAKNKEMETLSEELMQKQASLNTTTTELQQLRDMSSHQKKRIAEMLSNLLKELGE 577

Query: 520 IGLVIGSEG-DMKVTSDGAGKLEEEFTVARLYISKMK 555
           IG  +GS+G ++K+++D A KLEEEFTVARLYIS+MK
Sbjct: 578 IGSTLGSDGSEIKISND-AAKLEEEFTVARLYISRMK 613

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119113501|ref|XP_310522.2| AGAP000561-PA [Anopheles gambiae str. PEST] gi|116130389|gb|EAA45075.2| AGAP000561-PA [Anopheles gambiae str. PEST]

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 287/644 (44%), Positives = 364/644 (56%), Gaps = 132/644 (20%)

Query: 9   REIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNAT 68
           REI AEDSI+VVCRFRPLN SEE AGSKF+VKFPSG EEN LS+GGK YLFDKVFKPNAT
Sbjct: 5   REIPAEDSIKVVCRFRPLNDSEELAGSKFVVKFPSGPEENCLSIGGKVYLFDKVFKPNAT 64

Query: 69  QEKVYDE--------------------------------------AAKSIV--------- 81
           QEKVY+E                                      A + I+         
Sbjct: 65  QEKVYNEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDPAKQGIIPRIVNDIFN 124

Query: 82  -------SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPE 132
                  +++F +    Y + +D++R    +    +  H   + + +  GA+ERFV  PE
Sbjct: 125 HIYTMEMNIEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGASERFVSSPE 184

Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK 192
           EVFEVIEEGK+NRHIAVTNMNEHSSRSHSVFLINVKQEN+ENEKKLSGKLYLVDLAGSEK
Sbjct: 185 EVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENMENEKKLSGKLYLVDLAGSEK 244

Query: 193 VSKTGAEGTVLDEAKNINKSLSADG--------AGKLEEEF---TVARLYISKMKSEVKN 241
           VSKTGAEGTVLDEAKNINKSLSA G          K    +    + R+    +    + 
Sbjct: 245 VSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNART 304

Query: 242 LVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE--------RREQARKD----LKG 289
            +  C S  S    E K  +++ +     + ++  NE        RR +  K+    LKG
Sbjct: 305 TIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEREKEKNTKLKG 364

Query: 290 LEDTVTKELQTLHNLRKLFVQ---DLQARIKKSVTAE-------------ESEDDGGSLA 333
             + +  EL        + V+   DLQ    ++ T                +   GG L 
Sbjct: 365 KIEKLEAELARWRAGETVNVEEQLDLQQDAMEASTPNVEVLLAQPADLPVPATPGGGGLP 424

Query: 334 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQL 393
              +   LE   ++L   ++QL   + ++  +   +EK     +++ +LI   RRDYE L
Sbjct: 425 LSAERDTLEVERERL---YQQLDEKDEEINQQSQYVEKLKEQIIDQEELIANTRRDYENL 481

Query: 394 QGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453
           Q EMTR+ QENE+AKE                                EVKEVLQALEEL
Sbjct: 482 QSEMTRIQQENENAKE--------------------------------EVKEVLQALEEL 509

Query: 454 AVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513
           AVNYDQKSQE+E KNKE + + +EL  KQTTLN+  +ELQQ+KDMS+HQKKRINEMLTNL
Sbjct: 510 AVNYDQKSQEIELKNKEIDMVNDELLQKQTTLNSVQSELQQLKDMSSHQKKRINEMLTNL 569

Query: 514 LKDLCEIGLVIGSE-GDMKVTSDG-AGKLEEEFTVARLYISKMK 555
           L+DL E+G  + ++  +MK+  +  AGK+EEEFTVARLYISKMK
Sbjct: 570 LRDLSEVGQALAADQNEMKMNVEASAGKVEEEFTVARLYISKMK 613

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241456|ref|XP_973415.2| PREDICTED: similar to Kinesin heavy chain CG7765-PA [Tribolium castaneum]

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 297/637 (46%), Positives = 371/637 (58%), Gaps = 114/637 (17%)

Query: 7   ADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFD------ 60
            DREI AEDSI+VVCRFRPLN SEEKAGSKFIVKFPSGGE+N +S+ GK YLFD      
Sbjct: 3   GDREIPAEDSIKVVCRFRPLNDSEEKAGSKFIVKFPSGGEDNCISIAGKVYLFDKVFKPN 62

Query: 61  ----KVFKPNA---------------------------TQEKVYDEAAKS-----IVSVQ 84
               KV+   A                           T E V  +  K      IV+  
Sbjct: 63  ATQEKVYNEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDPQKQGIIPRIVNDI 122

Query: 85  F-------------VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGK 130
           F             +    + + +D++R    +    +  H   + + +  GATERFV  
Sbjct: 123 FNHIYAMEENLEFHIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSS 182

Query: 131 PEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGS 190
           PEEVFE IEEGK+NRHIAVTNMNEHSSRSHSVFLINVKQENLEN+KKLSGKLYLVDLAGS
Sbjct: 183 PEEVFESIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGS 242

Query: 191 EKVSKTGAEGTVLDEAKNINKSLSADG--------AGKLEEEF---TVARLYISKMKSEV 239
           EKVSKTGAEGTVLDEAKNINKSLSA G          K    +    + R+    +    
Sbjct: 243 EKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNA 302

Query: 240 KNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE--------RREQARKD----L 287
           +  +  C S  S    E K  +++ K     + ++  NE        RR +  K+    L
Sbjct: 303 RTTIVICCSPASFNESETKSTLDFGKRAKTVKNVVCVNEELTAEEWKRRYEKEKEKVARL 362

Query: 288 KGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQ 347
           KG  + +  ELQ             + R  ++V AEE  +          +S +E     
Sbjct: 363 KGKVEKLESELQ-------------RWRAGETVKAEEQVNLNELTEAVTPVSGMEE---- 405

Query: 348 LTKVHKQ--LVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQG---EMTRLTQ 402
            + V KQ  +    A +      +E+R +  +ER +L       Y+QL     E+   +Q
Sbjct: 406 -STVEKQGPVPATPALMIGSTLDVEERRKLELERERL-------YQQLDEKDEEINEQSQ 457

Query: 403 ENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQ 459
             E  KE++    ELI + RRDYE LQ EM R+ QENESAKEEVKEVLQALEELAVNYDQ
Sbjct: 458 YVEKLKEQMLEQDELIASTRRDYEALQAEMNRIQQENESAKEEVKEVLQALEELAVNYDQ 517

Query: 460 KSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCE 519
           KSQEV+ KNKE ETL+EEL  KQ +LNTT+TELQQ++DMS+HQKKRI EML+NLLK+L E
Sbjct: 518 KSQEVDAKNKEMETLSEELMQKQASLNTTTTELQQLRDMSSHQKKRIAEMLSNLLKELGE 577

Query: 520 IGLVIGSEG-DMKVTSDGAGKLEEEFTVARLYISKMK 555
           IG  +GS+G ++K+++D A KLEEEFTVARLYIS+MK
Sbjct: 578 IGSTLGSDGSEIKISND-AAKLEEEFTVARLYISRMK 613

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195150115|ref|XP_002016000.1| GL11356 [Drosophila persimilis] gi|194109847|gb|EDW31890.1| GL11356 [Drosophila persimilis]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 286/627 (45%), Positives = 362/627 (57%), Gaps = 103/627 (16%)

Query: 16  SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVY-- 73
           SI++VCRFRPLN SEEKAGSKF+VKFP+  EEN +S+ GK YLFDKVFKPNA+QEKVY  
Sbjct: 251 SIKLVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNASQEKVYNE 310

Query: 74  ------------------------------------DEAAKSI----------------V 81
                                               D A + I                V
Sbjct: 311 AAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSAKQGIIPRIVNDIFNHIYAMEV 370

Query: 82  SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFEVIE 139
           +++F +    Y + +D++R    +    +  H   + + +  GATERFV  PE+VFEVIE
Sbjct: 371 NLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIE 430

Query: 140 EGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAE 199
           EGK+NRHIAVTNMNEHSSRSHSVFLINVKQENLEN+KKLSGKLYLVDLAGSEKVSKTGAE
Sbjct: 431 EGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGAE 490

Query: 200 GTVLDEAKNINKSLSADG--------AGKLEEEF---TVARLYISKMKSEVKNLVARCTS 248
           GTVLDEAKNINKSLSA G          K    +    + R+    +    +  +  C S
Sbjct: 491 GTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCS 550

Query: 249 MESSQAEEHKKAIEYEKELGETRLLLQTNE--------RREQARKDLKGLEDTVTKELQT 300
             S    E K  +++ +     + ++  NE        RR +  K+  G         + 
Sbjct: 551 PASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNG---------RL 601

Query: 301 LHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNA 360
              + KL ++  + R  ++V AEE       +     +     NL+      K     +A
Sbjct: 602 KGKVEKLEIELARWRAGETVKAEE------QINMEDLMEASTPNLEVEAAQQKAAEAASA 655

Query: 361 DLRCELPKLEKRLRATMERVKLITTARRDYEQLQG---EMTRLTQENESAKEEV---KEL 414
             R  L  +   + A  ER +L T   R Y+QL     E+ + +Q  E  KE+V   +EL
Sbjct: 656 AQRTALANMSASVAAD-ERARLATECERLYQQLDDKDEEINQQSQYAEQMKEQVMEQEEL 714

Query: 415 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETL 474
           I  ARR+YE LQ EM R+ QENESAKEEVKEVLQALEELAVNYDQKSQE++ KNK+ + L
Sbjct: 715 IANARREYEALQSEMARIQQENESAKEEVKEVLQALEELAVNYDQKSQEIDNKNKDIDAL 774

Query: 475 TEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIG---SEGDMK 531
            EEL  KQT  N TSTELQQ+KDMS+HQKKRI EMLTNLL+DL E+G  I    S  D+K
Sbjct: 775 NEELQQKQTVFNATSTELQQLKDMSSHQKKRITEMLTNLLRDLGEVGQAIAPGDSAIDLK 834

Query: 532 VTS---DGAGKLEEEFTVARLYISKMK 555
           +++     A K+EE+FT+ARLYISKMK
Sbjct: 835 MSTLAGTDATKVEEDFTMARLYISKMK 861

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194757261|ref|XP_001960883.1| GF11276 [Drosophila ananassae] gi|190622181|gb|EDV37705.1| GF11276 [Drosophila ananassae]

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 292/642 (45%), Positives = 368/642 (57%), Gaps = 115/642 (17%)

Query: 7   ADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFD------ 60
           A+REI AEDSI+VVCRFRPLN SEEKAGSKF+VKFP+  EEN +S+ GK YLFD      
Sbjct: 3   AEREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPN 62

Query: 61  ----KVFKPNA---------------------------TQEKVYDEAAKS-----IVSVQ 84
               KV+   A                           T E V  ++ K      IV+  
Sbjct: 63  ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDI 122

Query: 85  F-------------VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGK 130
           F             +    Y + +D++R    +    +  H   + + +  GATERFV  
Sbjct: 123 FNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSS 182

Query: 131 PEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGS 190
           PE+VFEVIEEGK+NRHIAVTNMNEHSSRSHSVFLINVKQENLEN+KKLSGKLYLVDLAGS
Sbjct: 183 PEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGS 242

Query: 191 EKVSKTGAEGTVLDEAKNINKSLSADG--------AGKLEEEF---TVARLYISKMKSEV 239
           EKVSKTGAEGTVLDEAKNINKSLSA G          K    +    + R+    +    
Sbjct: 243 EKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNA 302

Query: 240 KNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE--------RREQARKD----L 287
           +  +  C S  S    E K  +++ +     + ++  NE        RR +  K+    L
Sbjct: 303 RTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNARL 362

Query: 288 KGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEE--SEDDGGSLAQRQKISFLENNL 345
           KG              + KL ++  + R  ++V AEE  + DD   ++          NL
Sbjct: 363 KG-------------KVEKLELELARWRSGETVKAEEQINMDDLMDVST--------PNL 401

Query: 346 DQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQG---EMTRLTQ 402
           D   +        NA  R  L  +   + A  ER +L T   R Y+QL     E+ + +Q
Sbjct: 402 DVEAQQQAAAEAANAAQRTALANMSASVAAD-ERARLATECERLYQQLDDKDEEINQQSQ 460

Query: 403 ENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQ 459
             E  KE+V   +ELI  ARR+YE LQ EM R+ QENESAKEEVKEVLQALEELAVNYDQ
Sbjct: 461 YAEQLKEQVMEQEELIANARREYEALQSEMARIQQENESAKEEVKEVLQALEELAVNYDQ 520

Query: 460 KSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCE 519
           KSQE++ KNK+ ++L EEL  KQT  +TTSTELQQ+KDMS+HQKKRI EMLTNLL+DL E
Sbjct: 521 KSQEIDNKNKDIDSLNEELQQKQTLFSTTSTELQQLKDMSSHQKKRITEMLTNLLRDLGE 580

Query: 520 IGLVIG---SEGDMKVTS---DGAGKLEEEFTVARLYISKMK 555
           +G  I    S  D+K+++     A K+EE+FT+ARLYISKMK
Sbjct: 581 VGQAIAPGDSAIDLKMSALAGTDASKVEEDFTMARLYISKMK 622

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017463|gb|EGI58186.1| Kinesin heavy chain [Acromyrmex echinatior]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 290/658 (44%), Positives = 361/658 (54%), Gaps = 141/658 (21%)

Query: 1   MSNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFD 60
           M+   P +REIAAEDSI+VVCRFRPLN SEEKAGSKFIVKFPSGG+EN +S+GGK YLFD
Sbjct: 1   MAMETPREREIAAEDSIKVVCRFRPLNDSEEKAGSKFIVKFPSGGDENCISIGGKVYLFD 60

Query: 61  ----------KVFKPNA---------------------------TQEKVYDEAAKS---- 79
                     KV+   A                           T E V  +  K     
Sbjct: 61  KVFKPNATQDKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDPNKQGIIP 120

Query: 80  -IVSVQF-------------VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGAT 124
            IV+  F             +    + + +D++R    +    +  H   + + F  GAT
Sbjct: 121 RIVNDIFNHIYGMEENLEFHIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKGAT 180

Query: 125 ERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYL 184
           ERFV  PEEVFEVIEEGK+NRHIAVTNMNEHSSRSHSVFLINVKQENLEN+KKLSGKLYL
Sbjct: 181 ERFVSSPEEVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYL 240

Query: 185 VDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG--------AGKLEEEF---TVARLYIS 233
           VDLAGSEKVSKTGAEGTVLDEAKNINKSLSA G          K    +    + R+   
Sbjct: 241 VDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQE 300

Query: 234 KMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE--------RREQARK 285
            +    +  +  C S  S    E K  +++ K     + ++  NE        RR +  K
Sbjct: 301 SLGGNARTTIIICCSPASFNESETKSTLDFGKRAKTIKNVVCVNEELTAEEWKRRYEREK 360

Query: 286 D----LKGLEDTVTKELQTLHNLRKL-------FVQDLQARIKKSVTAEESEDD------ 328
           +     KG  D +  EL        +        ++        +V+ E   DD      
Sbjct: 361 EKVARWKGKVDKLEAELSRWRQGETVKPEEQVNLIEGPDVTTPINVSIEGKLDDSPMPAT 420

Query: 329 -GGSLA-------QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERV 380
            GG L        +RQK+       ++  ++++QL   + ++  +   +EK      E+ 
Sbjct: 421 PGGGLMIGSLSNEERQKLE------EERERLYQQLDDKDEEINQQSQYVEKLKEQMEEQE 474

Query: 381 KLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAK 440
           +LI +ARRDYEQLQ EM R+ QENESAKE                               
Sbjct: 475 ELIASARRDYEQLQQEMNRIQQENESAKE------------------------------- 503

Query: 441 EEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSN 500
            EVKEVLQALEELAVNYDQKSQEVE KNKE E++TEEL  KQ TLN T++ELQQ++DMS 
Sbjct: 504 -EVKEVLQALEELAVNYDQKSQEVELKNKEQESMTEELLAKQVTLNNTASELQQLRDMSA 562

Query: 501 HQKKRINEMLTNLLKDLCEIGLVIGSEG--DMKVT-SDGAGKLEEEFTVARLYISKMK 555
           HQ+KRI EML N LKDL EIG+ IG E   ++K+   +  GKLEEEFTVARL+ISKMK
Sbjct: 563 HQRKRIAEMLANFLKDLGEIGVAIGGESNENLKIAPPESNGKLEEEFTVARLFISKMK 620

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	720
UNIPROTKB|O60282	957	KIF5C "Kinesin heavy chain iso	0.831	0.625	0.343	1.9e-108
UNIPROTKB|F1N945	995	KIF5C "Uncharacterized protein	0.827	0.598	0.346	3.9e-108
UNIPROTKB|E2RDZ9	957	KIF5C "Uncharacterized protein	0.831	0.625	0.347	2.7e-107
UNIPROTKB|F6RAG5	956	KIF5C "Uncharacterized protein	0.830	0.625	0.349	4.4e-107
ZFIN|ZDB-GENE-070629-4	962	kif5bb "kinesin family member	0.811	0.607	0.358	3.9e-106
UNIPROTKB|F1NE00	933	KIF5C "Uncharacterized protein	0.666	0.514	0.385	6.4e-106
UNIPROTKB|I3LUB8	946	KIF5C "Uncharacterized protein	0.831	0.633	0.347	2.7e-105
ZFIN|ZDB-GENE-070629-2	968	kif5ba "kinesin family member	0.816	0.607	0.353	4.4e-105
UNIPROTKB|E1C3A1	966	KIF5B "Uncharacterized protein	0.809	0.603	0.343	1.9e-104
UNIPROTKB|E2QTN0	963	KIF5B "Uncharacterized protein	0.809	0.605	0.338	1.3e-103

UNIPROTKB|O60282 KIF5C "Kinesin heavy chain isoform 5C" [Homo sapiens (taxid:9606)]

 Score = 782 (280.3 bits), Expect = 1.9e-108, Sum P(3) = 1.9e-108
 Identities = 221/644 (34%), Positives = 325/644 (50%)

Query:    72 VYDEAAKSIVSVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVG 129
             ++D       +++F +    + + +D++R    +  + +  H   + + +  G TERFV 
Sbjct:   116 IFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVS 175

Query:   130 KPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
              PEEV +VI+EGKANRH+AVTNMNEHSSRSHS+FLIN+KQEN+E EKKLSGKLYLVDLAG
Sbjct:   176 SPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAG 235

Query:   190 SEKVSKTGAEGTVLDEAKNINKSLSADG--AGKLEE---------EFTVARLYISKMKSE 238
             SEKVSKTGAEG VLDEAKNINKSLSA G     L E         +  + R+    +   
Sbjct:   236 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGN 295

Query:   239 VKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKEL 298
              +  +  C S       E K  + + +     +  +  N   E   ++ K   +   ++ 
Sbjct:   296 CRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVN--LELTAEEWKKKYEKEKEKN 353

Query:   299 QTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRD 358
             +TL N+    +Q L+  + +    E   +D    A+ QK      NL+        ++ +
Sbjct:   354 KTLKNV----IQHLEMELNRWRNGEAVPEDEQISAKDQK------NLEPCDNT--PIIDN 401

Query:   359 NADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEV---KELI 415
              A +   +   EK  +   E    I++  R  +    E+ + +Q  E  K+++    EL+
Sbjct:   402 IAPVVAGISTEEKE-KYDEE----ISSLYRQLDDKDDEINQQSQLAEKLKQQMLDQDELL 456

Query:   416 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVXXXXXXXXXXX 475
              + RRDYE++Q E+TRL  ENE+AK+EVKEVLQALEELAVNYDQKSQEV           
Sbjct:   457 ASTRRDYEKIQEELTRLQIENEAAKDEVKEVLQALEELAVNYDQKSQEVEDKTRANEQLT 516

Query:   476 XXXXXXXXXXXXXXXXXXXIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSD 535
                                ++++SNHQKKR  E+L  LLKDL EIG +IG+  D+K  +D
Sbjct:   517 DELAQKTTTLTTTQRELSQLQELSNHQKKRATEILNLLLKDLGEIGGIIGTN-DVKTLAD 575

Query:   536 GAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPA- 594
               G +EEEFT+ARLYISKMK      V   +Q+  A         A   E A   +L + 
Sbjct:   576 VNGVIEEEFTMARLYISKMKSEVKSLVNRSKQLESAQMDSNRKMNASERELAACQLLISQ 635

Query:   595 ----IPGSGLMLGSLSNXXXXXXXXXXXXXXXXXXXKDEEINQQSQYAEKLKE---QIME 647
                 I      + ++                     + +E   +  + +K KE   ++ +
Sbjct:   636 HEAKIKSLTDYMQNMEQKRRQLEESQDSLSEELAKLRAQEKMHEVSFQDKEKEHLTRLQD 695

Query:   648 QEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKL 691
              EE+   L   Q    RE  +K L  L D + ++ + +  +R L
Sbjct:   696 AEEMKKALE-QQMESHREAHQKQLSRLRDEIEEKQKIIDEIRDL 738

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0051028 "mRNA transport" evidence=ISS

GO:0005871 "kinesin complex" evidence=TAS

GO:0006996 "organelle organization" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1N945 KIF5C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 781 (280.0 bits), Expect = 3.9e-108, Sum P(3) = 3.9e-108
 Identities = 224/647 (34%), Positives = 328/647 (50%)

Query:    72 VYDEAAKSIVSVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVG 129
             ++D       +++F +    + + +D++R    +  + +  H   + + +  G TERFV 
Sbjct:   154 IFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVS 213

Query:   130 KPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
              PEEV +VI+EGKANRH+AVTNMNEHSSRSHS+FLIN+KQEN+E EKKLSGKLYLVDLAG
Sbjct:   214 SPEEVLDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAG 273

Query:   190 SEKVSKTGAEGTVLDEAKNINKSLSADG--AGKLEE---------EFTVARLYISKMKSE 238
             SEKVSKTGAEG VLDEAKNINKSLSA G     L E         +  + R+    +   
Sbjct:   274 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGN 333

Query:   239 VKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKEL 298
              +  +  C S       E K  + + +     +  +  N   E   ++ K   +    + 
Sbjct:   334 CRTTIVICCSPSIFNEAETKSTLMFGQRAKTIKNTVSVN--LELTAEEWKKKYEKEKDKN 391

Query:   299 QTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRD 358
             ++L N+    +Q L+  + +    E   +D    A+ QK      NL+         + D
Sbjct:   392 KSLKNV----IQHLELELNRWRNGEAVPEDEQISAKDQK------NLEPCDNTP---IID 438

Query:   359 NADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEV---KELI 415
             N          E++ +   E    I +  R  +    E+ + +Q  E  K+++   +EL+
Sbjct:   439 NITPVVASISTEEKQKYDEE----IASLYRQLDDKDDEINQQSQLAEKLKQQMLDQEELL 494

Query:   416 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVXXXXXXXXXXX 475
              + RRDYE++Q E+TRL  ENE+AK+EVKEVLQALEELAVNYDQKSQEV           
Sbjct:   495 ASTRRDYEKIQEELTRLQIENEAAKDEVKEVLQALEELAVNYDQKSQEVEDKTRANEQLA 554

Query:   476 XXXXXXXXXXXXXXXXXXXIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSD 535
                                ++++SNHQKKR  E+L  LLKDL EIG +IG+  D+K  +D
Sbjct:   555 DELAQKSTVLSATQRELGQLQELSNHQKKRATEILNLLLKDLGEIGGIIGTN-DVKTLAD 613

Query:   536 GAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASI-APTPESAPASILPA 594
               G +EEEFT+ARLYISKMK      V   +Q+  A  +D    + A   E A   +L  
Sbjct:   614 VNGVIEEEFTMARLYISKMKSEVKSLVNRSKQLESAQ-IDSNRKMNASERELAACQLL-- 670

Query:   595 IPGSGLMLGSLSNXXXXXXXXXXXXXXXXXXXKDEEINQQSQ-------YAEKLKE---Q 644
             I      + SL++                    +E    ++Q       + +K KE   +
Sbjct:   671 ISQHEAKIKSLTDYMQNMEQKRRQLEESQDSLNEELAKLRAQEKMHEVSFKDKEKEHLTR 730

Query:   645 IMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKL 691
             + + EE+   L   Q    RE  +K L  L D + ++ +T+  +R +
Sbjct:   731 LQDAEEMKKALE-QQMESHREAHQKQLSRLRDEIEEKQKTIDEIRDM 776

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

UNIPROTKB|E2RDZ9 KIF5C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 778 (278.9 bits), Expect = 2.7e-107, Sum P(3) = 2.7e-107
 Identities = 224/644 (34%), Positives = 325/644 (50%)

Query:    72 VYDEAAKSIVSVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVG 129
             ++D       +++F +    + + +D++R    +  + +  H   + + +  G TERFV 
Sbjct:   116 IFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVS 175

Query:   130 KPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
              PEEV +VI+EGKANRH+AVTNMNEHSSRSHS+FLIN+KQEN+E EKKLSGKLYLVDLAG
Sbjct:   176 SPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAG 235

Query:   190 SEKVSKTGAEGTVLDEAKNINKSLSADG--AGKLEE---------EFTVARLYISKMKSE 238
             SEKVSKTGAEG VLDEAKNINKSLSA G     L E         +  + R+    +   
Sbjct:   236 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGN 295

Query:   239 VKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKEL 298
              +  +  C S       E K  + + +     +  +  N   E   ++ K   +   ++ 
Sbjct:   296 CRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVN--LELTAEEWKKKYEKEKEKN 353

Query:   299 QTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRD 358
             +TL N+    +Q L+  + +    E   +D    A+ QK   LE   D  T +   +   
Sbjct:   354 KTLKNV----IQHLEMELNRWRNGEAVPEDEQINAKDQKT--LEP-CDN-TPIIDNIAPV 405

Query:   359 NADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEV---KELI 415
              A +  E    EK  +   E    I++  R  +    E+ + +Q  E  K+++    EL+
Sbjct:   406 VAGISAE----EKE-KYDEE----ISSLYRQLDDKDDEINQQSQLAEKLKQQMLDQDELL 456

Query:   416 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVXXXXXXXXXXX 475
              + RRDYE++Q E+TRL  ENE+AK+EVKEVLQALEELAVNYDQKSQEV           
Sbjct:   457 ASTRRDYEKIQEELTRLQIENEAAKDEVKEVLQALEELAVNYDQKSQEVEDKTRANEQLT 516

Query:   476 XXXXXXXXXXXXXXXXXXXIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSD 535
                                ++++SNHQKKR  E+L  LLKDL EIG +IG+  D+K  +D
Sbjct:   517 DELAQKTTTLTTTQRELSQLQELSNHQKKRATEILNLLLKDLGEIGGIIGTN-DVKTLAD 575

Query:   536 GAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPA- 594
               G +EEEFT+ARLYISKMK      V   +Q+  A         A   E A   +L + 
Sbjct:   576 VNGVIEEEFTMARLYISKMKSEVKSLVNRSKQLENAQMDSNRKMNASERELAACQLLISQ 635

Query:   595 ----IPGSGLMLGSLSNXXXXXXXXXXXXXXXXXXXKDEEINQQSQYAEKLKE---QIME 647
                 I      + ++                     + +E   +  + +K KE   ++ +
Sbjct:   636 HEAKIKSLTDYMQNMEQKRRQLEESQDSLSEELAKLRAQEKMHEVSFQDKEKEHLTRLQD 695

Query:   648 QEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKL 691
              EE+   L   Q    RE  +K L  L D + ++ + +  +R L
Sbjct:   696 AEEMKKALE-QQMESHREAHQKQLSRLRDEIEEKQKIIDEIRDL 738

GO:0043005 "neuron projection" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F6RAG5 KIF5C "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 776 (278.2 bits), Expect = 4.4e-107, Sum P(3) = 4.4e-107
 Identities = 225/644 (34%), Positives = 326/644 (50%)

Query:    72 VYDEAAKSIVSVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVG 129
             ++D       +++F +    + + +D++R    +  + +  H   + + +  G TERFV 
Sbjct:   116 IFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVS 175

Query:   130 KPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
              PEEV +VI+EGKANRH+AVTNMNEHSSRSHS+FLIN+KQEN+E EKKLSGKLYLVDLAG
Sbjct:   176 SPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAG 235

Query:   190 SEKVSKTGAEGTVLDEAKNINKSLSADG--AGKLEE---------EFTVARLYISKMKSE 238
             SEKVSKTGAEG VLDEAKNINKSLSA G     L E         +  + R+    +   
Sbjct:   236 SEKVSKTGAEGAVLDEAKNINKSLSALGNVIAALAEGTKTHVPYRDSKMTRILQDSLGGN 295

Query:   239 VKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKEL 298
              +  +  C S       E K  + + +     +  +  N   E   ++ K   +   ++ 
Sbjct:   296 CRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVN--LELTAEEWKKKYEKEKEKN 353

Query:   299 QTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRD 358
             +TL N+    +Q L+  + +    E   +D    A+ QK   LE   D  T +   +   
Sbjct:   354 KTLKNV----IQHLEMELNRWRNGEAVPEDEQISAKDQKS--LEP-CDN-TPIIDNIAPV 405

Query:   359 NADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEV---KELI 415
              A +  E    EK  +   E    I++  R  +    E+ + +Q  E  K+++    EL+
Sbjct:   406 VAGISAE----EKE-KYDEE----ISSLYRQLDDKDDEINQQSQLAEKLKQQMLDQDELL 456

Query:   416 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVXXXXXXXXXXX 475
              + RRDYE++Q E+TRL  ENE+AK+EVKEVLQALEELAVNYDQKSQEV           
Sbjct:   457 ASTRRDYEKIQEELTRLQIENEAAKDEVKEVLQALEELAVNYDQKSQEVEDKTRANEQLT 516

Query:   476 XXXXXXXXXXXXXXXXXXXIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSD 535
                                ++++SNHQKKR  E+L  LLKDL EIG +IG+  D+K T+D
Sbjct:   517 DELAQKTTTLTTTQRELSQLQELSNHQKKRATEILNLLLKDLGEIGGIIGTN-DVK-TAD 574

Query:   536 GAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPA- 594
               G +EEEFT+ARLYISKMK      V   +Q+  A         A   E A   +L + 
Sbjct:   575 VNGVIEEEFTMARLYISKMKSEVKSLVNRSKQLESAQMDSNRKMNASERELAACQLLISQ 634

Query:   595 ----IPGSGLMLGSLSNXXXXXXXXXXXXXXXXXXXKDEEINQQSQYAEKLKE---QIME 647
                 I      + ++                     + +E   +  + +K KE   ++ +
Sbjct:   635 HEAKIKSLTDYMQNMEQKRRQLEESQDSLSEELAKLRAQEKMHEVSFQDKEKEHLTRLQD 694

Query:   648 QEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKL 691
              EE+   L   Q    RE  +K L  L D + ++ + +  +R L
Sbjct:   695 AEEMKKALE-QQMESHREAHQKQLSRLRDEIEEKQKIIDEIRDL 737

GO:0043005 "neuron projection" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

ZFIN|ZDB-GENE-070629-4 kif5bb "kinesin family member 5B, b" [Danio rerio (taxid:7955)]

 Score = 777 (278.6 bits), Expect = 3.9e-106, Sum P(3) = 3.9e-106
 Identities = 224/625 (35%), Positives = 314/625 (50%)

Query:    82 SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFEVIE 139
             +++F +    + + +D++R    +  + +  H   + + +  G TERFV  PEEV + I+
Sbjct:   125 NLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPEEVMDTID 184

Query:   140 EGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAE 199
             EGK+NRH+AVTNMNEHSSRSHS+FLINVKQEN + E+KLSGKLYLVDLAGSEKVSKTGAE
Sbjct:   185 EGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAE 244

Query:   200 GTVLDEAKNINKSLSADG--AGKLEE---------EFTVARLYISKMKSEVKNLVARCTS 248
             G VLDEAKNINKSLSA G     L E         +  + R+    +    +  +  C S
Sbjct:   245 GAVLDEAKNINKSLSALGNVISALAEATQTYVPYRDSKMTRILQDSLGGNCRTTIVICCS 304

Query:   249 MESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLF 308
               S    E K  + + +     +  +  N   E   +  K   +   ++ +TL N     
Sbjct:   305 PSSFNEAETKSTLMFGQRAKTIKNTVSVNV--ELTAEQWKKKYEKEKEKNKTLKNTITWL 362

Query:   309 VQDLQA--RIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCEL 366
               +L       +SV  +E  D   + A    +  + NN D+ T           D   E 
Sbjct:   363 ENELNRWRNGSESVPVDEQYDKEKANADVLALDNVVNN-DKFTSTPSVPGLKFTD--AER 419

Query:   367 PKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQ 426
              K E  L    +++        D +    + ++L ++ +    + +EL+ + RRD++ LQ
Sbjct:   420 EKCEAELAKLFKQLD-------DKDDEINQQSQLAEKLKQQMLDQEELLASTRRDHDNLQ 472

Query:   427 GEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVXXXXXXXXXXXXXXXXXXXXXX 486
              E+TRL  ENE++KEEVKEVLQALEELAVNYDQKSQEV                      
Sbjct:   473 AELTRLQMENEASKEEVKEVLQALEELAVNYDQKSQEVEDKTKEFETLNEELNQKSSVLA 532

Query:   487 XXXXXXXXIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVT-SDGAGKLEEEFT 545
                     +K+M+NHQKKR+ EM+++LLKDL EIG+ +GS  D+KVT  +G G ++EEFT
Sbjct:   533 SIESELQKLKEMTNHQKKRVTEMMSSLLKDLAEIGIAVGSN-DIKVTRQEGGGLIDEEFT 591

Query:   546 VARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSL 605
             VARLYISKMK      VK  +Q+  A             E A   +   I      + SL
Sbjct:   592 VARLYISKMKSEVKTLVKRSKQLESAQTESNKKMDENEKELAACQL--RISQYEAKIKSL 649

Query:   606 SNXXXXXXXXXXXXXXXXXXXKDE--EINQQSQYA-EKL----KE-QIMEQEEVSGLLVC 657
             S                     +E  +++ Q  +  EK+    KE +I    EV    V 
Sbjct:   650 SEYLQNIEQKKRQLEENVDSLNEELVKLSAQGTHTHEKVHAMEKENEIQSANEVKAA-VE 708

Query:   658 GQTNERREQARKDLKGLEDTV-TKE 681
              Q    RE  +K L  L D + TKE
Sbjct:   709 QQIQNHREAHQKQLSSLRDELETKE 733

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|F1NE00 KIF5C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 765 (274.4 bits), Expect = 6.4e-106, Sum P(3) = 6.4e-106
 Identities = 199/516 (38%), Positives = 280/516 (54%)

Query:    72 VYDEAAKSIVSVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVG 129
             ++D       +++F +    + + +D++R    +  + +  H   + + +  G TERFV 
Sbjct:   110 IFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVS 169

Query:   130 KPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
              PEEV +VI+EGKANRH+AVTNMNEHSSRSHS+FLIN+KQEN+E EKKLSGKLYLVDLAG
Sbjct:   170 SPEEVLDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAG 229

Query:   190 SEKVSKTGAEGTVLDEAKNINKSLSADG--AGKLEE---------EFTVARLYISKMKSE 238
             SEKVSKTGAEG VLDEAKNINKSLSA G     L E         +  + R+    +   
Sbjct:   230 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGN 289

Query:   239 VKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKEL 298
              +  +  C S       E K  + + +     +  +  N   E   ++ K   +    + 
Sbjct:   290 CRTTIVICCSPSIFNEAETKSTLMFGQRAKTIKNTVSVN--LELTAEEWKKKYEKEKDKN 347

Query:   299 QTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRD 358
             ++L N+    +Q L+  + +    E   +D    A+ QK      NL+         + D
Sbjct:   348 KSLKNV----IQHLELELNRWRNGEAVPEDEQISAKDQK------NLEPCDNTP---IID 394

Query:   359 NADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEV---KELI 415
             N          E++ +   E    I +  R  +    E+ + +Q  E  K+++   +EL+
Sbjct:   395 NITPVVASISTEEKQKYDEE----IASLYRQLDDKDDEINQQSQLAEKLKQQMLDQEELL 450

Query:   416 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVXXXXXXXXXXX 475
              + RRDYE++Q E+TRL  ENE+AK+EVKEVLQALEELAVNYDQKSQEV           
Sbjct:   451 ASTRRDYEKIQEELTRLQIENEAAKDEVKEVLQALEELAVNYDQKSQEVEDKTRANEQLA 510

Query:   476 XXXXXXXXXXXXXXXXXXXIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSD 535
                                ++++SNHQKKR  E+L  LLKDL EIG +IG+  D+K  +D
Sbjct:   511 DELAQKSTVLSATQRELGQLQELSNHQKKRATEILNLLLKDLGEIGGIIGTN-DVKTLAD 569

Query:   536 GAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLA 571
               G +EEEFT+ARLYISKMK      V   +Q+  A
Sbjct:   570 VNGVIEEEFTMARLYISKMKSEVKSLVNRSKQLESA 605

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|I3LUB8 KIF5C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 780 (279.6 bits), Expect = 2.7e-105, Sum P(3) = 2.7e-105
 Identities = 224/644 (34%), Positives = 325/644 (50%)

Query:    72 VYDEAAKSIVSVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVG 129
             ++D       +++F +    + + +D++R    +  + +  H   + + +  G TERFV 
Sbjct:   105 IFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVS 164

Query:   130 KPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
              PEEV +VI+EGKANRH+AVTNMNEHSSRSHS+FLIN+KQEN+E EKKLSGKLYLVDLAG
Sbjct:   165 SPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAG 224

Query:   190 SEKVSKTGAEGTVLDEAKNINKSLSADG--AGKLEE---------EFTVARLYISKMKSE 238
             SEKVSKTGAEG VLDEAKNINKSLSA G     L E         +  + R+    +   
Sbjct:   225 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGN 284

Query:   239 VKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKEL 298
              +  +  C S       E K  + + +     +  +  N   E   ++ K   +   ++ 
Sbjct:   285 CRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVN--LELTAEEWKKKYEKEKEKN 342

Query:   299 QTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRD 358
             +TL N+    +Q L+  + +    E   +D    A+ QK   LE   D  T +   +   
Sbjct:   343 KTLKNV----IQHLEMELNRWRNGEAVPEDEQISAKDQKT--LEP-CDN-TPIIDNIAPV 394

Query:   359 NADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEV---KELI 415
              A +  E    EK  +   E    I++  R  +    E+ + +Q  E  K+++    EL+
Sbjct:   395 VAGITAE----EKE-KYDEE----ISSLYRQLDDKDDEINQQSQLAEKLKQQMLDQDELL 445

Query:   416 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVXXXXXXXXXXX 475
              + RRDYE++Q E+TRL  ENE+AK+EVKEVLQALEELAVNYDQKSQEV           
Sbjct:   446 ASTRRDYEKIQEELTRLQIENEAAKDEVKEVLQALEELAVNYDQKSQEVEDKTRANEQLT 505

Query:   476 XXXXXXXXXXXXXXXXXXXIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSD 535
                                ++++SNHQKKR  E+L  LLKDL EIG +IG+  D+K  +D
Sbjct:   506 DELAQKTTTLTTTQRELSQLQELSNHQKKRATEILNLLLKDLGEIGGIIGTN-DVKTLAD 564

Query:   536 GAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPA- 594
               G +EEEFT+ARLYISKMK      V   +Q+  A         A   E A   +L + 
Sbjct:   565 VNGVIEEEFTMARLYISKMKSEVKSLVNRSKQLESAQMDSNRKMNASERELAACQLLISQ 624

Query:   595 ----IPGSGLMLGSLSNXXXXXXXXXXXXXXXXXXXKDEEINQQSQYAEKLKE---QIME 647
                 I      + ++                     + +E   +  + +K KE   ++ +
Sbjct:   625 HEAKIKSLTDYMQNMEQKRRQLEESQDSLSEELAKLRAQEKMHEVSFQDKEKEHLTRLQD 684

Query:   648 QEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKL 691
              EE+   L   Q    RE  +K L  L D + ++ + +  +R L
Sbjct:   685 AEEMKKALE-QQMESHREAHQKQLSRLRDEIEEKQKIIDEIRDL 727

GO:0043005 "neuron projection" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

ZFIN|ZDB-GENE-070629-2 kif5ba "kinesin family member 5B, a" [Danio rerio (taxid:7955)]

 Score = 765 (274.4 bits), Expect = 4.4e-105, Sum P(3) = 4.4e-105
 Identities = 218/617 (35%), Positives = 311/617 (50%)

Query:    82 SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFEVIE 139
             +++F +    + + +D++R    +  + +  H   + + +  G TERFV  PEEV + I+
Sbjct:   125 NLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPEEVMDTID 184

Query:   140 EGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAE 199
             EGK+NRH+AVTNMNEHSSRSHS+FLINVKQEN + E+KLSGKLYLVDLAGSEKVSKTGAE
Sbjct:   185 EGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAE 244

Query:   200 GTVLDEAKNINKSLSADG--AGKLEEEFTVARLYISKMK--------SEVKNLVARCTSM 249
             G VLDEAKNINKSLS+ G     L E  T      SKM            +  +  C S 
Sbjct:   245 GAVLDEAKNINKSLSSLGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSP 304

Query:   250 ESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFV 309
              +    E K  + + +     +  +  N   E   +  K   +   +  ++L N      
Sbjct:   305 SAFNEAETKSTLMFGQRAKTIKNTVCVNV--ELTAEQWKKKYEKERERNKSLRNTITWLE 362

Query:   310 QDLQA-RIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPK 368
              +L   R  ++V AEE  D     A+   +    NN D+              L   L  
Sbjct:   363 NELNRWRNGETVPAEEQYDKEKVNAEVLALDNTINN-DKFASTPSMPPMPGM-LGTRLTG 420

Query:   369 LEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGE 428
             +EK  +  +E  KL        E++  + ++L ++ +    + +EL+ ++RRD++ LQ E
Sbjct:   421 VEKD-KCEVELGKLYKQLDDKDEEIN-QQSQLVEKLKQQMLDQEELLASSRRDHDNLQAE 478

Query:   429 MTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVXXXXXXXXXXXXXXXXXXXXXXXX 488
             +TRL  ENE++KEEVKEVLQALEELAVNYDQKSQEV                        
Sbjct:   479 LTRLQLENEASKEEVKEVLQALEELAVNYDQKSQEVEDKTKEFEALSEELSQKSSTLASI 538

Query:   489 XXXXXXIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVAR 548
                   +K+M+NHQKKR+ EM+++LLKDL EIG+ +G+  D+K   +G+G ++EEFTVAR
Sbjct:   539 DSELQKLKEMANHQKKRVTEMMSSLLKDLTEIGIAVGNN-DIK--HEGSGLIDEEFTVAR 595

Query:   549 LYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNX 608
             LYISKMK      VK  +Q+                E A   +   I      + SL+  
Sbjct:   596 LYISKMKSEVKSMVKRCKQLENTQSESNKKMDESDKELAACQL--RISQHEAKIKSLTEY 653

Query:   609 XXXXXXXXXXXXXXXXXXKDEEIN---QQSQYAEKLKEQIMEQEEVSGLLVCGQTNERRE 665
                                +E +    Q+  +A + + +I    EV    V  Q    RE
Sbjct:   654 LQNVEQKKRQLEEDVDSLNEELVKISAQEKVHAMEKESEIQSANEVKEA-VEKQIQSHRE 712

Query:   666 QARKDLKGLEDTV-TKE 681
               +K +  L D + TKE
Sbjct:   713 AHQKQISSLRDELETKE 729

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E1C3A1 KIF5B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 748 (268.4 bits), Expect = 1.9e-104, Sum P(3) = 1.9e-104
 Identities = 213/620 (34%), Positives = 316/620 (50%)

Query:    82 SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFEVIE 139
             +++F +    + + +D++R    +  + +  H   + + +  G TERFV  PEEV + I+
Sbjct:   125 NLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPEEVMDTID 184

Query:   140 EGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAE 199
             EGK+NRH+AVTNMNEHSSRSHS+FLINVKQEN + E+KLSGKLYLVDLAGSEKVSKTGAE
Sbjct:   185 EGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAE 244

Query:   200 GTVLDEAKNINKSLSADG--AGKLEEEFTVARLYISKMK--------SEVKNLVARCTSM 249
             G VLDEAKNINKSLSA G     L E  T      SKM            +  +  C S 
Sbjct:   245 GAVLDEAKNINKSLSALGNVISALAESSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSP 304

Query:   250 ESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFV 309
              S    E K  + + +     +  +  N   E   +  K   +   ++ +TL N  +   
Sbjct:   305 SSYNESETKSTLLFGQRAKTIKNTVCVNV--ELTAEQWKKKYEKEKEKNKTLRNTIQWLE 362

Query:   310 QDLQA-RIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPK 368
              +L   R  ++V  +E  D       ++K +     +D+   V          +      
Sbjct:   363 NELNRWRNGETVPVDEQFD-------KEKANLEAFAVDKDITVINDKPATTIGVTGNFTD 415

Query:   369 LEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGE 428
              E+R +   E  KL        E++  + ++L ++ ++   + +EL+ + RRD + LQ E
Sbjct:   416 AERR-KCEEEIAKLYKQLDDKDEEIN-QQSQLVEKLKTQMLDQEELLASTRRDQDNLQAE 473

Query:   429 MTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVXXXXXXXXXXXXXXXXXXXXXXXX 488
             + RL  EN+++KEEVKEVLQALEELAVNYDQKSQEV                        
Sbjct:   474 LNRLQAENDASKEEVKEVLQALEELAVNYDQKSQEVEDKAKEYELLSDELNQKSVTLASI 533

Query:   489 XXXXXXIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVAR 548
                   +K+M+NHQKKR  EM+ +LLKDL EIG+ +G+  D+K   +G G ++EEFTVAR
Sbjct:   534 DAELQKLKEMTNHQKKRATEMMASLLKDLAEIGIAVGNN-DVK-QPEGTGMIDEEFTVAR 591

Query:   549 LYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNX 608
             LYISKMK      VK  +Q+      +    +    +   A  L  I      + SL+  
Sbjct:   592 LYISKMKSEVKTMVKRCKQLE-GTQAESNKKMEENEKELAACQL-RISQHEAKIKSLTEY 649

Query:   609 XXXXXXXXXXXXXXXXXXKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQT-NERREQA 667
                                +E +  ++Q  EK+ E  ME+E ++ +    QT NE ++  
Sbjct:   650 LQNVEQKKRQLEESVDSLNEELVQLRAQ--EKVHE--MEKEHLNKV----QTANEVKQAV 701

Query:   668 RKDLKGLEDTVTKELQTLHN 687
              + ++   +T  K++ +L +
Sbjct:   702 EQQIQSHRETHQKQISSLRD 721

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0035617 "stress granule disassembly" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043268 "positive regulation of potassium ion transport" evidence=IEA

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=IEA

UNIPROTKB|E2QTN0 KIF5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 741 (265.9 bits), Expect = 1.3e-103, Sum P(3) = 1.3e-103
 Identities = 210/620 (33%), Positives = 317/620 (51%)

Query:    82 SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFEVIE 139
             +++F +    + + +D++R    +  + +  H   + + +  G TERFV  P+EV + I+
Sbjct:   125 NLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTID 184

Query:   140 EGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAE 199
             EGK+NRH+AVTNMNEHSSRSHS+FLINVKQEN + E+KLSGKLYLVDLAGSEKVSKTGAE
Sbjct:   185 EGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAE 244

Query:   200 GTVLDEAKNINKSLSADG--AGKLEEEFTVARLYISKMK--------SEVKNLVARCTSM 249
             G VLDEAKNINKSLSA G     L E  T      SKM            +  +  C S 
Sbjct:   245 GAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSP 304

Query:   250 ESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFV 309
              S    E K  + + +     +  +  N   E   +  K   +   ++ +TL N  +   
Sbjct:   305 SSYNESETKSTLLFGQRAKTIKNTVCVNV--ELTAEQWKKKYEREKEKNKTLRNTIQWLE 362

Query:   310 QDLQA-RIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPK 368
              +L   R  ++V  +E  D       ++K +     +D+   +          +      
Sbjct:   363 NELNRWRNGETVPVDEQFD-------KEKANLEAFAVDKDVTITNDKPAATIGVTGNFTD 415

Query:   369 LEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGE 428
              E+R +   E  KL        E++  + ++L ++ ++   + +EL+ + RRD + +Q E
Sbjct:   416 AERR-KCEEEIAKLYKQLDDKDEEIN-QQSQLVEKLKTQMLDQEELLASTRRDQDNMQAE 473

Query:   429 MTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVXXXXXXXXXXXXXXXXXXXXXXXX 488
             + RL  EN+++KEEVKEVLQALEELAVNYDQKSQEV                        
Sbjct:   474 LNRLQAENDASKEEVKEVLQALEELAVNYDQKSQEVEDKTKEYELLSDELNQKSATLASI 533

Query:   489 XXXXXXIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVAR 548
                   +K+M+NHQKKR  EM+ +LLKDL EIG+ +G+  D+K   +G G ++EEFTVAR
Sbjct:   534 DAELQKLKEMTNHQKKRAAEMMASLLKDLAEIGIAVGNN-DVK-QPEGTGMIDEEFTVAR 591

Query:   549 LYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNX 608
             LYISKMK      VK  +Q+  +   +    +    +   A  L  I      + SL+  
Sbjct:   592 LYISKMKSEVKTMVKRCKQLE-STQTESNKKMEENEKELAACQL-RISQHEAKIKSLTEY 649

Query:   609 XXXXXXXXXXXXXXXXXXKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQT-NERREQA 667
                                +E +  ++Q  EK+ E  ME+E ++ +    QT NE ++  
Sbjct:   650 LQNVEQKKRQLEESVDSLSEELVQLRAQ--EKVHE--MEKEHLNKV----QTANEVKQAV 701

Query:   668 RKDLKGLEDTVTKELQTLHN 687
              + ++   +T  K++ +L +
Sbjct:   702 EQQIQSHRETHQKQISSLRD 721

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=IEA

GO:0043268 "positive regulation of potassium ion transport" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0035617 "stress granule disassembly" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	720
cd01369	325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	4e-54
cd00106	328	cd00106, KISc, Kinesin motor domain	2e-36
smart00129	335	smart00129, KISc, Kinesin motor, catalytic domain	3e-36
pfam00225	326	pfam00225, Kinesin, Kinesin motor domain	3e-36
cd01366	329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	2e-34
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	2e-29
cd01372	341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	7e-24
cd01371	333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	2e-22
cd01364	352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	2e-22
cd01365	356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	2e-21
cd01374	321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	3e-21
cd01370	338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	2e-20
cd01375	334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	2e-20
cd01373	337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	2e-19
COG5059	568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	5e-19
cd01367	322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	5e-19
cd01369	325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	7e-19
cd01368	345	cd01368, KISc_KIF23_like, Kinesin motor domain, KI	2e-18
cd01376	319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	5e-15
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-13
smart00129	335	smart00129, KISc, Kinesin motor, catalytic domain	9e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
PLN03188	1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	5e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
cd01366	329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	1e-08
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-08
cd00106	328	cd00106, KISc, Kinesin motor domain	6e-08
cd01364	352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	6e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-08
pfam00225	326	pfam00225, Kinesin, Kinesin motor domain	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-07
cd01370	338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	8e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-07
cd01371	333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	3e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
cd01372	341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-05
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	7e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	2e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
cd01374	321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-04
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
PRK11448	1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	0.001
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.001
cd01365	356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	0.002
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.002
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.004

>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

 Score =  189 bits (481), Expect = 4e-54
 Identities = 71/96 (73%), Positives = 78/96 (81%)

Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGK 181
           G TERFV  PEEV EVI EGK+NR +A TNMNE SSRSHS+FLI +KQEN+E   K  GK
Sbjct: 166 GLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGK 225

Query: 182 LYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           L+LVDLAGSEKVSKTGAEG  L+EAK INKSLSA G
Sbjct: 226 LFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALG 261

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325

>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain

 Score =  139 bits (352), Expect = 2e-36
 Identities = 59/122 (48%), Positives = 75/122 (61%), Gaps = 3/122 (2%)

Query: 96  DRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEH 155
           D L  +   K  ++ E     + V  G TE  VG  E+   ++++G  NR  A T MNE 
Sbjct: 143 DLLSPEPPSKPLSLREDPKGGVYV-KGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNER 201

Query: 156 SSRSHSVFLINVKQENLENEKKL--SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
           SSRSH++F I+V+Q N  N+ +   S KL LVDLAGSE+  KTGAEG  L EAKNINKSL
Sbjct: 202 SSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSL 261

Query: 214 SA 215
           SA
Sbjct: 262 SA 263

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain

 Score =  139 bits (352), Expect = 3e-36
 Identities = 56/109 (51%), Positives = 69/109 (63%), Gaps = 3/109 (2%)

Query: 109 MCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVK 168
           + E     + V  G TE  V   EEV+ ++E+G  NR +A T MNE SSRSH+VF I V+
Sbjct: 154 IREDEKGGVYV-KGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVE 212

Query: 169 QE--NLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
           Q+  N  +    + KL LVDLAGSE+  KTGAEG  L EA NINKSLSA
Sbjct: 213 QKIKNSSSGSGKASKLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSA 261

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. Length = 335

>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain

 Score =  138 bits (351), Expect = 3e-36
 Identities = 61/122 (50%), Positives = 74/122 (60%), Gaps = 3/122 (2%)

Query: 96  DRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEH 155
           D L    + K   + E     + V  G TE  V   EEV E++E G  NR +A TNMNE 
Sbjct: 140 DLLSPSSKKKKLRIREDPKKGVYV-KGLTEVEVTSAEEVLELLELGNKNRTVASTNMNEE 198

Query: 156 SSRSHSVFLINVKQENLE-NEKKLSGKLYLVDLAGSEKVSKTG-AEGTVLDEAKNINKSL 213
           SSRSH++F I V+Q N + +    +GKL LVDLAGSE+ SKTG A G  L EA NINKSL
Sbjct: 199 SSRSHAIFTITVEQRNRDTDGSVKTGKLNLVDLAGSERASKTGAAGGRRLKEAANINKSL 258

Query: 214 SA 215
           SA
Sbjct: 259 SA 260

Length = 326

>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

 Score =  133 bits (337), Expect = 2e-34
 Identities = 51/95 (53%), Positives = 65/95 (68%)

Query: 121 PGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG 180
              TE  V  PEEV  ++  G  NR +A TNMNEHSSRSH+VF + ++  NL+  ++  G
Sbjct: 167 TNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRG 226

Query: 181 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
           KL LVDLAGSE++ K+GA G  L EA+ INKSLSA
Sbjct: 227 KLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSA 261

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score =  114 bits (288), Expect = 2e-29
 Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 3/90 (3%)

Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---NEKKLSGKLYLVDLA 188
            +V +++++G ANR  A T MNEHSSRSHSVF I+   +N      E+   GK+ LVDLA
Sbjct: 56  TDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLA 115

Query: 189 GSEKVSKTGAEGTVLDEAKNINKSLSADGA 218
           GSE++  +GAEG+ L E  NINKSLS  G 
Sbjct: 116 GSERIDFSGAEGSRLTETANINKSLSTLGN 145

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily

 Score =  103 bits (258), Expect = 7e-24
 Identities = 42/110 (38%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
           I+  G TE  V   +EV   +E+G  +R  A T MN  SSRSH++F I ++Q        
Sbjct: 165 IIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIA 224

Query: 178 LSG----------KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
                        K + VDLAGSE++ KTGA G  L E  +IN  L A G
Sbjct: 225 PMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALG 274

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins

 Score = 99.0 bits (247), Expect = 2e-22
 Identities = 45/89 (50%), Positives = 56/89 (62%), Gaps = 3/89 (3%)

Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS---GKLYLVDLA 188
           EE+ +++  G  NR +  TNMNE SSRSHS+F I ++      + +     GKL LVDLA
Sbjct: 181 EEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLA 240

Query: 189 GSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           GSE+ SKTGA G  L EA  IN SLSA G
Sbjct: 241 GSERQSKTGATGDRLKEATKINLSLSALG 269

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333

>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

 Score = 99.3 bits (248), Expect = 2e-22
 Identities = 44/99 (44%), Positives = 60/99 (60%), Gaps = 3/99 (3%)

Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINV--KQENLENE 175
           +V  G  E  V    E  +++E+G A R  A T MN+ SSRSHS+F I +  K+  +  E
Sbjct: 178 VVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGE 237

Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
           + +  GKL LVDLAGSE + ++GAE     EA NIN+SL
Sbjct: 238 ELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSL 276

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins

 Score = 96.6 bits (241), Expect = 2e-21
 Identities = 46/91 (50%), Positives = 60/91 (65%), Gaps = 4/91 (4%)

Query: 128 VGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG----KLY 183
           V   E++  ++EEG  +R  A TNMN+ SSRSH+VF I + Q+ L+ E  L+     K+ 
Sbjct: 185 VTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKIS 244

Query: 184 LVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
           LVDLAGSE+ S TGAEG  L E  NINKSL+
Sbjct: 245 LVDLAGSERASSTGAEGDRLKEGSNINKSLT 275

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively. Length = 356

>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

 Score = 94.7 bits (236), Expect = 3e-21
 Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 4/95 (4%)

Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINV---KQENLENEKKL 178
           G TE  V  PE + ++I  G+ NRH+  T+ NE SSRSH++F + +   ++ + E+    
Sbjct: 159 GLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVR 218

Query: 179 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
              L L+DLAGSE+ S+TG  G    E   INKSL
Sbjct: 219 VSTLNLIDLAGSERASQTG-AGERRKEGSFINKSL 252

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321

>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup

 Score = 92.7 bits (231), Expect = 2e-20
 Identities = 45/103 (43%), Positives = 58/103 (56%), Gaps = 3/103 (2%)

Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---N 174
           IV  G TE      EE+ E++ +G  NR    T  N  SSRSH+V  I V+Q++     N
Sbjct: 170 IVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASIN 229

Query: 175 EKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           ++   GKL L+DLAGSE+ S T   G  L E  NIN+SL A G
Sbjct: 230 QQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALG 272

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 338

>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

 Score = 92.5 bits (230), Expect = 2e-20
 Identities = 45/85 (52%), Positives = 57/85 (67%), Gaps = 2/85 (2%)

Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQEN--LENEKKLSGKLYLVDLAG 189
           EE   ++  G+ NR IA T+MN+ SSRSH +F I+++  +    +E     KL LVDLAG
Sbjct: 185 EEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAG 244

Query: 190 SEKVSKTGAEGTVLDEAKNINKSLS 214
           SE+VSKTG  G VL EAK INKSLS
Sbjct: 245 SERVSKTGVSGQVLKEAKYINKSLS 269

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 334

>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup

 Score = 90.2 bits (224), Expect = 2e-19
 Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 2/98 (2%)

Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS-- 179
             TE +V   E+V++V+ +G +NR +A T+MN  SSRSH+VF   ++    +        
Sbjct: 173 NLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRT 232

Query: 180 GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
            +L LVDLAGSE+    GAEG  L EAKNINKSLS  G
Sbjct: 233 SRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLG 270

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 337

>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]

 Score = 91.0 bits (226), Expect = 5e-19
 Identities = 65/212 (30%), Positives = 92/212 (43%), Gaps = 53/212 (25%)

Query: 57  YLFDKVFKPNATQEKVYDEAAKSIVSV-------------QFVDADQYMVSVD------- 96
           Y FDKVF P+ATQE VY+E  K ++               Q      Y +S         
Sbjct: 58  YAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGII 117

Query: 97  --------------RLRSDHQLKASTM-------------CEHSLMHL------IVFPGA 123
                          +  D  +  S +              E SL         +   G 
Sbjct: 118 PLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGL 177

Query: 124 TERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLY 183
           TE+ V   EE+ +++ +G+ NR  A T +N+ SSRSHS+F I +  +N  +    + KL 
Sbjct: 178 TEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLS 237

Query: 184 LVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
           LVDLAGSE+ ++TG  GT L E  +INKSL  
Sbjct: 238 LVDLAGSERAARTGNRGTRLKEGASINKSLLT 269

Length = 568

>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group

 Score = 88.5 bits (220), Expect = 5e-19
 Identities = 69/264 (26%), Positives = 91/264 (34%), Gaps = 72/264 (27%)

Query: 17  IRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKF----------YLFDKVFKPN 66
           I V  R RPLN  E   G   +V   S           K           + FD VF   
Sbjct: 3   ITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEA 62

Query: 67  ATQEKVYDE-------------------------------------------AAKSIVSV 83
            T E+VY                                             AA+ I  +
Sbjct: 63  VTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRL 122

Query: 84  QFVDADQYMVSV-----------DRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPE 132
                D   V+V           D L    +L    + E      +   G TE+ V   +
Sbjct: 123 LAQPNDDLGVTVSFFEIYGGKLFDLLNDRKRLS---VLEDG-KGNVQIVGLTEKPVTSVD 178

Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK 192
           E+ E+IE G + R    T  N+ SSRSH++  I +K + L    KL GKL  +DLAGSE+
Sbjct: 179 ELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKLN---KLLGKLSFIDLAGSER 235

Query: 193 VSKTGAEGT-VLDEAKNINKSLSA 215
            + T         E   INKSL A
Sbjct: 236 GADTSEHDRQTRKEGAEINKSLLA 259

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322

>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

 Score = 88.1 bits (219), Expect = 7e-19
 Identities = 39/69 (56%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE-ENGLSLGGKFYLFDKVFKPNATQEKV 72
          E +I+VVCRFRPLN  EE  GSK IVKFP         S  GK + FD+VF PN TQE V
Sbjct: 1  ECNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDV 60

Query: 73 YDEAAKSIV 81
          Y+  AK IV
Sbjct: 61 YNFVAKPIV 69

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325

>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup

 Score = 87.4 bits (217), Expect = 2e-18
 Identities = 49/125 (39%), Positives = 62/125 (49%), Gaps = 20/125 (16%)

Query: 97  RLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHS 156
           RLR DH               +   G TE  V   EE  EV + G+ NR +A T +N  S
Sbjct: 162 RLREDHN------------GNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRES 209

Query: 157 SRSHSVFLINVKQENLENEKKLS--------GKLYLVDLAGSEKVSKTGAEGTVLDEAKN 208
           SRSHSVF I + Q   +++  +          +L LVDLAGSE+ S+T   G  L EA N
Sbjct: 210 SRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGN 269

Query: 209 INKSL 213
           IN SL
Sbjct: 270 INTSL 274

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 345

>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup

 Score = 76.4 bits (188), Expect = 5e-15
 Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 2/98 (2%)

Query: 116 HLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENE 175
             I+  G T + +    E  E       NR +A T +N++SSRSH+V  I V Q    + 
Sbjct: 159 GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQP--ASN 216

Query: 176 KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
            +L GKL L+DLAGSE   +TG EG  L E+  IN SL
Sbjct: 217 IQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSL 254

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 73.6 bits (181), Expect = 3e-13
 Identities = 55/274 (20%), Positives = 109/274 (39%), Gaps = 3/274 (1%)

Query: 236 KSEVKNLVARCTSMESSQAEEHKKAIEYEKELGE-TRLLLQTNERREQARKDLKGLEDTV 294
           + E++ L  +   +E   AE  K   E  KEL E    L Q  +  E+  + +  L   +
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 295 TKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQ 354
            +    +  L +   Q  +   +     EE E+        ++++  E  +++L    +Q
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA--EEELAEAEAEIEELEAQIEQ 793

Query: 355 LVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKEL 414
           L  +   LR  L +L   L    E    +       E+      R  ++ E   EE+ E 
Sbjct: 794 LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853

Query: 415 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETL 474
           I +   + E+L+  +  L  E E+   E   + +AL  L    ++ S+E+     +   L
Sbjct: 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL 913

Query: 475 TEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE 508
             EL   +  L      L+ ++   ++ ++R++E
Sbjct: 914 RRELEELREKLAQLELRLEGLEVRIDNLQERLSE 947

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain

 Score = 66.8 bits (164), Expect = 9e-12
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE------NGLSLGGKFYLFDKVFKPNATQ 69
          +IRVV R RPLN  E+   S  +V FP    +           G K + FDKVF   A+Q
Sbjct: 1  NIRVVVRVRPLNKREKSRKSPSVVPFPDKVGKTLTVRSPKNRQGEKKFTFDKVFDATASQ 60

Query: 70 EKVYDEAAKSIV 81
          E V++E A  +V
Sbjct: 61 EDVFEETAAPLV 72

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. Length = 335

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.1 bits (159), Expect = 1e-10
 Identities = 62/271 (22%), Positives = 127/271 (46%), Gaps = 12/271 (4%)

Query: 253 QAEEHKKAIEYEKELGETRLLL------QTNERREQARKDLKGLEDTVTKELQTLHNLRK 306
           QAE+ ++  E + EL E  L L      +  +  E+  ++L  LE+ + +ELQ      +
Sbjct: 208 QAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEEL-EELQEELEEAE 266

Query: 307 LFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCEL 366
             +++L++ ++  +  E  E     L  +++I  LE  +  L +  ++L  +  +L   L
Sbjct: 267 KEIEELKSELE-ELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERL 325

Query: 367 PKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESA----KEEVKELITTARRDY 422
            +L++++ A  E ++   T   + EQL  E+    +E E       EE++EL    R + 
Sbjct: 326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREEL 385

Query: 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQ 482
            +L+ E+  +  E E  K E++ + + LE L+   +   +E++    E E L  EL    
Sbjct: 386 AELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELN 445

Query: 483 TTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513
             L     +L++++D     ++ + E+   L
Sbjct: 446 EELEELEEQLEELRDRLKELERELAELQEEL 476

Length = 1163

>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional

 Score = 63.0 bits (153), Expect = 5e-10
 Identities = 42/98 (42%), Positives = 57/98 (58%), Gaps = 4/98 (4%)

Query: 124 TERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG--- 180
           TE +V   ++V +++ +G +NR    T++N  SSRSHSVF   V+         LS    
Sbjct: 269 TEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKT 328

Query: 181 -KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
            ++ LVDLAGSE+   TGA G  L EA NIN+SLS  G
Sbjct: 329 SRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLG 366

Length = 1320

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 61.2 bits (149), Expect = 2e-09
 Identities = 83/385 (21%), Positives = 153/385 (39%), Gaps = 42/385 (10%)

Query: 275 QTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQ 334
           +T  + E+ R++L  LED +  EL+    L+ L  Q  +A   K + AE  E +   L  
Sbjct: 176 ETERKLERTRENLDRLED-ILNELER--QLKSLERQAEKAERYKELKAELRELELALLVL 232

Query: 335 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATM----ERVKLITTARRDY 390
           R  +  L   L++L +  K+   +  +L  EL +LE++L        E  + I   +++ 
Sbjct: 233 R--LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290

Query: 391 EQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 450
             L  E++RL Q+ +  +E +  L     R  E+L+ ++  L  + +   EE+ E+ + L
Sbjct: 291 YALANEISRLEQQKQILRERLANL----ERQLEELEAQLEELESKLDELAEELAELEEKL 346

Query: 451 EELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEML 510
           EEL    +    E+E    E E L   L   +  L T  +++ Q++     Q   +N  +
Sbjct: 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE----LQIASLNNEI 402

Query: 511 TNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNL 570
             L   L  +      E   +       +L ++   A L   + +    E   E+ Q  L
Sbjct: 403 ERLEARLERL------EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456

Query: 571 ADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEE 630
               +    +    E A                    +     E E  +L  +LD  +  
Sbjct: 457 ERLEEALEELREELEEA-------------------EQALDAAERELAQLQARLDSLERL 497

Query: 631 INQQSQYAEKLKEQIMEQEEVSGLL 655
                 ++E +K  +  Q  +SG+L
Sbjct: 498 QENLEGFSEGVKALLKNQSGLSGIL 522

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE----NGLSLGGKFYLFDKVFKPNATQEK 71
          +IRV CR RPL  SE    S  ++ FP         +  +   K + FD+VF P+A+QE 
Sbjct: 3  NIRVFCRVRPLLPSESTEYSS-VISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQED 61

Query: 72 VYDEAAKSIVSV 83
          V++E +  + S 
Sbjct: 62 VFEEVSPLVQSA 73

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 58.2 bits (141), Expect = 1e-08
 Identities = 81/474 (17%), Positives = 183/474 (38%), Gaps = 50/474 (10%)

Query: 219 GKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE 278
            K E+   + +  I + K++++ L  + +       E+  +A+E E +  +    +Q  +
Sbjct: 167 EKYEKLSELLKEVIKEAKAKIEELEGQLSE-LLEDIEDLLEALEEELKELKKLEEIQEEQ 225

Query: 279 RREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQR-QK 337
             E+  ++++ LE+ + +  +    L +L  + L+    +    +  E++   L +  ++
Sbjct: 226 EEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEE 285

Query: 338 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEM 397
           +      L++L +  ++L  +   LR  L +LE+ L       + +       E+L+ E+
Sbjct: 286 LEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESEL 345

Query: 398 TRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNY 457
             L +E     + ++E +       E+L+ E+ +  +  +  +E ++E+ + L EL+   
Sbjct: 346 EELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAAL 405

Query: 458 DQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDL 517
           ++  +E+E   KE E L  EL   +  +     ++ Q             E++   L   
Sbjct: 406 EEIQEELEELEKELEELERELEELEEEIKKLEEQINQ---------LESKELMIAELAGA 456

Query: 518 CEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMA 577
            E   V G E   +   +     E E       +S+ K       + +E           
Sbjct: 457 GEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEE----------- 505

Query: 578 ASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQY 637
                                         +E ++LEEE   L +  +   EE+ ++ + 
Sbjct: 506 ----------------------------LEKELRELEEELIELLELEEALKEELEEKLEK 537

Query: 638 AEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKL 691
            E L E++ E +E   L    +   + E   ++LK L + +         L +L
Sbjct: 538 LENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEEL 591

Length = 908

>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain

 Score = 54.5 bits (132), Expect = 6e-08
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE------ENGLSLGGKFYLFDKVFKPNATQ 69
          +IRVV R RPLN   E    +  +             ++G   G K + FD VF PN+TQ
Sbjct: 1  NIRVVVRIRPLN-GRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQ 59

Query: 70 EKVYDEAAKSIV 81
          E VY+  AK +V
Sbjct: 60 EDVYETTAKPLV 71

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328

>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

 Score = 55.0 bits (133), Expect = 6e-08
 Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG------KFYLFDKVFKPNA 67
          E +I+VV R RP N  E K  S  +V+     +E  +S GG      K Y FDKVF P A
Sbjct: 1  ESNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEA 60

Query: 68 TQEKVYDEAAKSIV 81
           Q +VY +    I+
Sbjct: 61 DQIEVYSQVVSPIL 74

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.8 bits (135), Expect = 7e-08
 Identities = 67/270 (24%), Positives = 118/270 (43%), Gaps = 17/270 (6%)

Query: 253 QAEEHKKAIEYEKELGETRLLLQT------NERREQARKDLKGLEDTVTKELQTLHNLRK 306
           QAE+ ++  E + EL E  L L         E  E+ +++LK  E+ + +EL     L++
Sbjct: 208 QAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEEL-EELTA--ELQE 264

Query: 307 LFVQDLQARIKKSVTAEESED-DGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCE 365
           L  +  + R++ S   EE E+      A   +IS LE     L +    L R   +L  +
Sbjct: 265 LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ 324

Query: 366 LPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKEL---ITTARRDY 422
           L +LE +L    E +  +       E+L+ E+  L  E E  + E++EL   +       
Sbjct: 325 LEELESKLDELAEELAELEE---KLEELKEELESLEAELEELEAELEELESRLEELEEQL 381

Query: 423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLT-EELTLK 481
           E L+ ++ +L  +  S   E++ +   LE L    ++  QE+E   K+ E    +EL  +
Sbjct: 382 ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAE 441

Query: 482 QTTLNTTSTELQQIKDMSNHQKKRINEMLT 511
              L     ELQ+  +      + + E L 
Sbjct: 442 LEELEEELEELQEELERLEEALEELREELE 471

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.8 bits (135), Expect = 8e-08
 Identities = 66/388 (17%), Positives = 146/388 (37%), Gaps = 51/388 (13%)

Query: 273  LLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSL 332
            +L+     E+  + ++ LE+ + +  + L  LRK   +  +   +     EE        
Sbjct: 672  ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ--IS 729

Query: 333  AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQ 392
            A R+ ++ LE  ++QL +   QL ++  +L  E+ +LE+RL    E +        + E 
Sbjct: 730  ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789

Query: 393  LQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452
               ++    +    A +E++  +T    +   L+  +  L +   + +  ++++ + +EE
Sbjct: 790  QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849

Query: 453  LAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTN 512
            L+ + +  + E+E   +  E L  EL             L   +         +   L  
Sbjct: 850  LSEDIESLAAEIEELEELIEELESEL-----------EALLNERASLEEALALLRSELEE 898

Query: 513  LLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWR---NGETVKEDEQVN 569
            L ++L E+      E           +L E+     L +  ++ R     E + E+  + 
Sbjct: 899  LSEELREL------ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952

Query: 570  LADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERL--------- 620
            L +   +   I    E A   +                   ++LE + + L         
Sbjct: 953  LEEAEALENKIEDDEEEARRRL-------------------KRLENKIKELGPVNLAAIE 993

Query: 621  -YQQLDEKDEEINQQSQYAEKLKEQIME 647
             Y++L E+ + +  Q +   + KE + E
Sbjct: 994  EYEELKERYDFLTAQKEDLTEAKETLEE 1021

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 28/67 (41%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 22 RFRPLNHSEEKAGSKFIVKFPSGGEENGLS------LGGKFYLFDKVFKPNATQEKVYDE 75
          R RPLN  E+  GS  IV       E+  S         K + FD+VF P ATQE VY+E
Sbjct: 1  RVRPLNEREKSRGSSDIVNVDETDSEDKESVVITNKGREKTFTFDRVFDPEATQEFVYEE 60

Query: 76 AAKSIVS 82
           AK +V 
Sbjct: 61 TAKPLVE 67

Length = 326

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.6 bits (129), Expect = 3e-07
 Identities = 66/334 (19%), Positives = 140/334 (41%), Gaps = 31/334 (9%)

Query: 368 KLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESA------KEEVKEL-ITTARR 420
           + E++L  T E ++ +     + E+   ++ +L ++ E A      K E++EL +     
Sbjct: 176 EAERKLERTEENLERLEDLLEELEK---QLEKLERQAEKAERYQELKAELRELELALLLA 232

Query: 421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTL 480
             ++L+ E+  L +E    +EE++E+ + LEE     ++   E+E   +E E L EEL  
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292

Query: 481 KQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKL 540
            +  +     E+  +++     +  + E+   L +   +I      + +++       +L
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKI---EALKEELEERETLLEEL 349

Query: 541 EEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGL 600
           E+          +++ +    ++E E++  A   ++A   A         +         
Sbjct: 350 EQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAEL-AEIRNELEEL------ 402

Query: 601 MLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQT 660
                   E + LEE  ERL ++L++  EE+ +     E+L+ ++ E  E    L     
Sbjct: 403 ------KREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEEL----- 451

Query: 661 NERREQARKDLKGLEDTVTKELQTLHNLRKLFVQ 694
            E+ E+ R  LK LE  + +  + L  L K    
Sbjct: 452 EEQLEELRDRLKELERELAELQEELQRLEKELSS 485

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.2 bits (128), Expect = 4e-07
 Identities = 63/308 (20%), Positives = 125/308 (40%), Gaps = 25/308 (8%)

Query: 217 GAGKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQT 276
           G  + +      +  + +++ E+  L A+   +E        +    E  L E R  L+ 
Sbjct: 654 GGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEE 713

Query: 277 NERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQ 336
            ER+ +  K          +EL  L    +     L+   ++    EE  ++      ++
Sbjct: 714 LERQLEELK----------RELAALEEELEQLQSRLEELEEELEELEEELEE-----LQE 758

Query: 337 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGE 396
           ++  LE  L+ L +   +L  +  +L  +   L++ L    E    +  A R  + L+ E
Sbjct: 759 RLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEE---ELEEAERRLDALERE 815

Query: 397 MTRLTQENESAKEEVKEL---ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453
           +  L Q  E  ++E++EL   I       ++L+ E+  L +E E  KEE++E+    EEL
Sbjct: 816 LESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL 875

Query: 454 AVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513
                +  +E E   +E   L  EL   +  +      L++++       +R+   L  L
Sbjct: 876 EDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAK----LERLEVELPEL 931

Query: 514 LKDLCEIG 521
            ++L E  
Sbjct: 932 EEELEEEY 939

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.8 bits (127), Expect = 7e-07
 Identities = 61/322 (18%), Positives = 124/322 (38%), Gaps = 41/322 (12%)

Query: 329 GGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARR 388
           GGS      I      +++L +  ++L    A+L   L +L K L    E ++ +     
Sbjct: 663 GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE 722

Query: 389 DYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 448
           +  +    + +     E+  E+++E I    ++  +L+ E+  L +  E A+EE+ E   
Sbjct: 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA 782

Query: 449 ALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE 508
            +EEL    +Q  +E++   +  + L  ELTL           L+ ++      ++R+ E
Sbjct: 783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL-E 841

Query: 509 MLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQV 568
            L   +++L E   +     +++   +   +LE E     L   +        +   E  
Sbjct: 842 DLEEQIEELSED--IESLAAEIEELEELIEELESELEA--LLNERASLEEALALLRSELE 897

Query: 569 NLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKD 628
            L+                                    EE ++LE +R  L ++L+E  
Sbjct: 898 ELS------------------------------------EELRELESKRSELRRELEELR 921

Query: 629 EEINQQSQYAEKLKEQIMEQEE 650
           E++ Q     E L+ +I   +E
Sbjct: 922 EKLAQLELRLEGLEVRIDNLQE 943

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup

 Score = 51.1 bits (123), Expect = 8e-07
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 14/81 (17%)

Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKF---------PSGGEENGLSLGGKF-----YLFDK 61
          S+ V  R RP N  E++ G++ +VK          P   E+   +L  +      Y FD+
Sbjct: 1  SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDR 60

Query: 62 VFKPNATQEKVYDEAAKSIVS 82
          VF   +TQE+VY+   K +V 
Sbjct: 61 VFDETSTQEEVYENTTKPLVD 81

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 338

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.4 bits (126), Expect = 8e-07
 Identities = 78/351 (22%), Positives = 147/351 (41%), Gaps = 40/351 (11%)

Query: 309  VQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPK 368
            + +L+A+++K     +S         + ++  LE+ L++L +  ++L R   +L+ EL  
Sbjct: 676  LAELEAQLEKLEEELKS--------LKNELRSLEDLLEELRRQLEELERQLEELKRELAA 727

Query: 369  LEKRLRATMERVKL----ITTARRDYEQLQGEMTRLTQENESAKEEVKEL---ITTARRD 421
            LE+ L     R++     +     + E+LQ  +  L +E ES +E + +L   I      
Sbjct: 728  LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787

Query: 422  YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLK 481
             + LQ E+  L +E E A+  +  + + LE L    ++  QE+E   +E E L E+L   
Sbjct: 788  RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL 847

Query: 482  QTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLE 541
            +  L     EL+++K+     +    E L + LK+L E    +  E           +LE
Sbjct: 848  EEELEELEKELEELKEELEELEAEKEE-LEDELKELEEEKEELEEELR---------ELE 897

Query: 542  EEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLM 601
             E    +  I K++ R  E   + E++ +  P           ++    +          
Sbjct: 898  SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELE-------RE 950

Query: 602  LGSLSNEERQKLE-------EERERLYQQLDEKDEEINQQSQYAEKLKEQI 645
            +  L  EE + L        EE E + ++ +E   +     +  EKL E I
Sbjct: 951  IERL-EEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVI 1000

Length = 1163

>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 15 DSIRVVCRFRPLNHSEEKAGSKFIVKF-PSGGE------ENGLSLGGKFYLFDKVFKPNA 67
          ++++VV R RPLN  E+  G+  IV    + G+      +       K + FD V+ PN+
Sbjct: 1  ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNS 60

Query: 68 TQEKVYDEAAKSIVS 82
          TQE VY+E A+ +V 
Sbjct: 61 TQEDVYNETARPLVD 75

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.4 bits (121), Expect = 3e-06
 Identities = 51/264 (19%), Positives = 106/264 (40%), Gaps = 32/264 (12%)

Query: 220 KLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQT--- 276
           +L+EE   A   + ++ +E++ L  +   +    +E  ++  E +KEL      +     
Sbjct: 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ 302

Query: 277 -----NERREQARKDLKGLEDTVTKELQTLHNLRKLF--VQDLQARIKKSVTAEESEDDG 329
                 ER     + L+ LE  + +    L  L +    +++    +K+ + + E+E + 
Sbjct: 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE- 361

Query: 330 GSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRD 389
                  ++  LE+ L++L +  + L    A L  ++  L   +                
Sbjct: 362 ---ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE----------RLEAR 408

Query: 390 YEQLQGEMTRLTQENES--------AKEEVKELITTARRDYEQLQGEMTRLTQENESAKE 441
            E+L+    RL QE E           +E++  +     + E+LQ E+ RL +  E  +E
Sbjct: 409 LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468

Query: 442 EVKEVLQALEELAVNYDQKSQEVE 465
           E++E  QAL+       Q    ++
Sbjct: 469 ELEEAEQALDAAERELAQLQARLD 492

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.6 bits (116), Expect = 1e-05
 Identities = 67/316 (21%), Positives = 130/316 (41%), Gaps = 16/316 (5%)

Query: 169  QENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAGKLEEEFTVA 228
                E  ++L  +L  ++    E   +       L+E +   +SL    A KL+EE    
Sbjct: 726  AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA-KLKEEIEEL 784

Query: 229  RLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRL--LLQTNERREQARKD 286
                  ++ E++ L       E  +AE    A+E E E  E R   L Q  E  E+  ++
Sbjct: 785  EEKRQALQEELEEL-----EEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839

Query: 287  LKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLD 346
            L+   D + +EL+ L    +   ++L+    +    E+   +       ++   LE  L 
Sbjct: 840  LEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE-----LEEEKEELEEELR 894

Query: 347  QLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQ--LQGEMTRLTQEN 404
            +L     +L  +   LR  L +LE +L      +  +     +  +  L+ E+ R  +  
Sbjct: 895  ELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERL 954

Query: 405  ESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEV 464
            E   E +  +   A  +YE+++     L  + E  +E  +++L+ +EEL     ++ +E 
Sbjct: 955  EEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKET 1014

Query: 465  ETK-NKEFETLTEELT 479
              K N+ F  + +EL 
Sbjct: 1015 FDKINENFSEIFKELF 1030

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 57/297 (19%), Positives = 126/297 (42%), Gaps = 31/297 (10%)

Query: 220 KLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNER 279
           K E E          ++ + + +  +  S+E    +  ++  E EK L E   LL   E 
Sbjct: 220 KREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLL--EEL 277

Query: 280 REQARKDLKGLEDTVTKELQTLH----------NLRKLFVQDLQARIKKSV-----TAEE 324
            ++ +   +  +  V +++  L             ++  ++D + R+ K          E
Sbjct: 278 NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337

Query: 325 SEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT----MERV 380
            E+    + + +K        D+LT+ + +L  +  DLR EL +++K    T     +  
Sbjct: 338 IEELEREIEEERK------RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391

Query: 381 KLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAK 440
           + +   +R+  +L+ E+ RL +E +   EE+ +L          ++ ++  L +E E   
Sbjct: 392 EKLEKLKREINELKRELDRLQEELQRLSEELADL----NAAIAGIEAKINELEEEKEDKA 447

Query: 441 EEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497
            E+K+    LE+LA +  +  QE+    +E++ + +EL+  Q  L     + +  ++
Sbjct: 448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG-KFYLFDKVFKPNATQEKVYD 74
          S+RV  R RPL   E   G +  V    G  E  +++G  K + FD VF P+ +QE+VY+
Sbjct: 2  SVRVAVRVRPLLPKELLEGCQVCVSVVPG--EPQVTVGTDKSFTFDYVFDPSTSQEEVYN 59

Query: 75 EAAKSIV 81
               +V
Sbjct: 60 TCVAPLV 66

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 4e-05
 Identities = 52/254 (20%), Positives = 107/254 (42%), Gaps = 24/254 (9%)

Query: 220 KLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNER 279
           +L+EE    +  I +++ E+  L  R   +E+   E  ++  E ++++   +   +  E 
Sbjct: 285 ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALK---EELEE 341

Query: 280 REQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQ-RQKI 338
           RE   ++L+ L   + +  + L       +++L+   +     EE  +    LA+ R ++
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEAL--REELAELEAELAEIRNEL 399

Query: 339 SFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMT 398
             L+  ++ L +  ++L     DL+ EL +LE  L             + + E+L  E+ 
Sbjct: 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEEL----------QTELEELNEELE 449

Query: 399 RLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD 458
            L ++ E  ++ +KEL     R+  +LQ E+ RL +E  S +      L  LE       
Sbjct: 450 ELEEQLEELRDRLKEL----ERELAELQEELQRLEKELSSLEAR----LDRLEAEQRASQ 501

Query: 459 QKSQEVETKNKEFE 472
                +E       
Sbjct: 502 GVRAVLEALESGLP 515

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 5e-05
 Identities = 65/315 (20%), Positives = 141/315 (44%), Gaps = 12/315 (3%)

Query: 170 ENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAGKLEEEFTVAR 229
           E++E  ++L GK  +V L G E   K+GA    +       +        +  E   +  
Sbjct: 627 EDIEAARRLMGKYRMVTLEG-ELFEKSGA----MTGGSRAPRGGILFSRSEPAELQRLRE 681

Query: 230 LYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRL-LLQTNERREQARKDLK 288
             +  +K E+ +L +    +E+   E  ++  +  +++GE    + Q  +  E+ ++ L+
Sbjct: 682 -RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE 740

Query: 289 GLEDTVTKELQTLHNLRKLFVQDLQARI-KKSVTAEESEDDGGSLAQRQKISFLENNLDQ 347
            LE+ ++   Q + N++   +++L+ARI +      + E+    L  R   S +     +
Sbjct: 741 ELEEDLSSLEQEIENVKSE-LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAE 799

Query: 348 LTKVHKQLVRDNADLRCELPKLEKR--LRATMERVKLITTARRDYEQLQGEMTRLTQEN- 404
           L+K+ +++ R  A LR    KL +    +  +E+       +R   + Q +      EN 
Sbjct: 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL 859

Query: 405 ESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEV 464
              KEE++E +         L+  +  L +E +  + +++E+ + +EEL    ++K + +
Sbjct: 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919

Query: 465 ETKNKEFETLTEELT 479
                + E L EEL+
Sbjct: 920 SELKAKLEALEEELS 934

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 385 TARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVK 444
           +AR    +LQ E+  L +E    +E++ EL    +++ ++L+ E++ L  E E  ++E  
Sbjct: 63  SARERLPELQQELAELQEELAELQEQLAEL----QQENQELKQELSTLEAELERLQKE-L 117

Query: 445 EVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTS 489
             ++ L   A+  D++++E+  +  E +   E L  +   L    
Sbjct: 118 ARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENE 162

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.8 bits (109), Expect = 8e-05
 Identities = 55/269 (20%), Positives = 103/269 (38%), Gaps = 29/269 (10%)

Query: 387 RRDYEQLQGEMTRLTQENESAKEEVKEL---ITTARRDYEQLQGEMTRLTQENESAKEEV 443
           R   E L+ E++ L  E    +  + EL   ++ A R   +++ E+ +L QE E  KE  
Sbjct: 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKER- 738

Query: 444 KEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQK 503
                 LEEL  +     QE+E    E + L   +   +  L+     L  ++   +H +
Sbjct: 739 ------LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR 792

Query: 504 -KRINEMLTNLLKDLCEIGLVIGS-EGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGET 561
              I   L+ L +++  I   +   E  +   +     LE+E    +     +K +    
Sbjct: 793 IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852

Query: 562 VKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLY 621
            KE E +N     ++   +                     L  L       L++ER+ L 
Sbjct: 853 EKEIENLN-GKKEELEEELEELE---------------AALRDLE-SRLGDLKKERDELE 895

Query: 622 QQLDEKDEEINQQSQYAEKLKEQIMEQEE 650
            QL E + +I +     EK ++++ E + 
Sbjct: 896 AQLRELERKIEELEAQIEKKRKRLSELKA 924

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 60/307 (19%), Positives = 126/307 (41%), Gaps = 24/307 (7%)

Query: 219 GKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE 278
            KLEE+          M +E+     +C        EEH+K +    EL    L  + + 
Sbjct: 434 KKLEEQINQLESK-ELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSR 492

Query: 279 RREQA---------RKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDG 329
            +E+A          K+L+ LE+ + + L+    L++   + L+         EE ++  
Sbjct: 493 EKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKL 552

Query: 330 GSLAQRQKISFLENNLDQLTKVHKQLVRDN------ADLRCELPKLEKRLRATMERVKLI 383
                ++++  LE+ L +L ++ ++L           +LR  L +L+K+L+   ER+  +
Sbjct: 553 QLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQL 612

Query: 384 TTARRD------YEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENE 437
               +         +L+     L  E E    +  EL    +   E+L+ ++  L  E  
Sbjct: 613 EELLQSLELSEAENELEEAEEELESELEKLNLQ-AELEELLQAALEELEEKVEELEAE-I 670

Query: 438 SAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497
             + +  E  + LEE     +Q  +E+E   +E E L ++L   +  +    +   ++++
Sbjct: 671 RRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEE 730

Query: 498 MSNHQKK 504
           +    +K
Sbjct: 731 LKKELEK 737

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 93/467 (19%), Positives = 196/467 (41%), Gaps = 47/467 (10%)

Query: 232 ISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQT--NERREQARKDLKG 289
           + ++  ++K+L  R   +E    E+ +K     +EL E +  L     ER ++  + L+ 
Sbjct: 317 LEELLEKLKSLEERLEKLE----EKLEKLESELEELAEEKNELAKLLEERLKELEERLEE 372

Query: 290 LEDTVTKELQTLHNLRK---LFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLD 346
           LE  + K L+ L  L +      ++L          +E  +        +++  LE  L+
Sbjct: 373 LEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELE-----ELEKELEELERELE 427

Query: 347 QLTKVHKQLVRDNADLRCELPKLEKRLRA------------TMERVKLITTARRDYEQLQ 394
           +L +  K+L      L  +   + +   A                 +L+     + E+L+
Sbjct: 428 ELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELE 487

Query: 395 GEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELA 454
            E++R  +E    +EE++EL    R   E+L   +       E  +E+++++   LEEL 
Sbjct: 488 EELSR-EKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELE 546

Query: 455 VNYDQ-KSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513
              ++ + Q+++ + ++ E   +EL      L    T  ++++++   + K + + L  L
Sbjct: 547 ELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEEL-RERLKELKKKLKEL 605

Query: 514 LKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADP 573
            + L ++      E  ++       + E E     L     K      ++E  Q  L + 
Sbjct: 606 EERLSQL------EELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEEL 659

Query: 574 VDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQ 633
            +    +    E+     L  I     +   L  EE ++LEEE E+L ++L+E  +++ +
Sbjct: 660 EEKVEEL----EAEIRRELQRIENEEQLEEKL--EELEQLEEELEQLREELEELLKKLGE 713

Query: 634 QSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTK 680
             Q  E+L+ +  E EE+   L      E+ E+A + L+ L + + K
Sbjct: 714 IEQLIEELESRKAELEELKKEL------EKLEKALELLEELREKLGK 754

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 55/308 (17%), Positives = 125/308 (40%), Gaps = 43/308 (13%)

Query: 275 QTNERREQARKDLKGLE----------DTVTKELQTLHNLR--KLFVQDLQARIKKSVTA 322
           + + ++E+A ++L+ +E          D   ++L+ L   R      Q L    ++    
Sbjct: 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKRE---Y 223

Query: 323 EESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKL 382
           E  E      A  ++   +E  L  L +  ++L  + ++L   L ++E+ L    +++K 
Sbjct: 224 EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD 283

Query: 383 IT-----TARRDYEQLQGEMTRLTQENESAKEEVKEL-----------------ITTARR 420
           +        +    +L+ E+  L +     + E+++                  I    R
Sbjct: 284 LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER 343

Query: 421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTL 480
           + E+ +    +LT+E    KEE++++   LEE+   + +   E++   ++ E L  E+  
Sbjct: 344 EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403

Query: 481 KQTTLNTTSTELQQIK----DMSNHQKKRINEMLTNLLKDLCEIGLVI-GSEGDMKVTSD 535
            +  L+    ELQ++     D++      I   +  L ++  +  L I   E  ++  + 
Sbjct: 404 LKRELDRLQEELQRLSEELADLNA-AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA 462

Query: 536 GAGKLEEE 543
              K E+E
Sbjct: 463 DLSKYEQE 470

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 45.0 bits (106), Expect = 2e-04
 Identities = 51/252 (20%), Positives = 87/252 (34%), Gaps = 12/252 (4%)

Query: 254 AEEHKKAIEYEKELGETRL------------LLQTNERREQARKDLKGLEDTVTKELQTL 301
            E+ KKA+EY +   +  L            L +      Q     +  E   +K+    
Sbjct: 204 KEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEK 263

Query: 302 HNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNAD 361
                  V       +K    +E E    +  + +  S L     +     ++L     +
Sbjct: 264 EEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 323

Query: 362 LRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRD 421
           L+    +L+K      E  K +       E  + E  +L +  E  ++  +EL+   + +
Sbjct: 324 LKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLE 383

Query: 422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLK 481
            E+L        +E E   EE KE    LE      D   +E + + K  E L E L  K
Sbjct: 384 SERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETK 443

Query: 482 QTTLNTTSTELQ 493
           Q  L     EL+
Sbjct: 444 QGKLTEEKEELE 455

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 54/226 (23%), Positives = 113/226 (50%), Gaps = 14/226 (6%)

Query: 232 ISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETR----LLLQTNERREQARKDL 287
           + +++ E++ L      +E  + E  +   E E   G  R     + +  ER E+ +K++
Sbjct: 216 LPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI 275

Query: 288 KGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQ 347
           + LE+ V KEL+ L    + +++  +   +      E E     L   ++I+ +E  + +
Sbjct: 276 EELEEKV-KELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRL--EEEINGIEERIKE 332

Query: 348 LTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESA 407
           L +  ++L     +L+ +L +LEKRL    ER +L   A+   E+L+    RLT      
Sbjct: 333 LEEKEERL----EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLT--- 385

Query: 408 KEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453
            E++++ +    +  E+++ E++++T      K+E+KE+ +A+EEL
Sbjct: 386 PEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL 431

Length = 880

>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

 Score = 43.4 bits (103), Expect = 3e-04
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL----GGKFYLFDKVFKPNATQEK 71
           I+V  R RPLN  E            S   +N +SL     G+ + FD+VF   +T  +
Sbjct: 1  KIKVSVRVRPLNPRESDNEQVAW----SIDNDNTISLEESTPGQSFTFDRVFGGESTNRE 56

Query: 72 VYDEAAKSIV 81
          VY+  AK +V
Sbjct: 57 VYERIAKPVV 66

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 88/475 (18%), Positives = 190/475 (40%), Gaps = 32/475 (6%)

Query: 234 KMKSEVKNLVARCTSMESSQAEEHKKAI-EYEKELGETRLLLQTNERREQARKDLKGLED 292
           +   E+K  +    S+E    +  ++ + E E+ L E    ++  E  E+  ++L+   +
Sbjct: 249 ERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE 308

Query: 293 TVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQK------ISFLENNLD 346
            +   L+ L  L +      +   K     E+ E +   LA+ +          L+   +
Sbjct: 309 GLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEE 368

Query: 347 QLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENES 406
           +L ++ K+L +    L+    +LE+ ++   E +  ++ A  + ++   E+ +  +E E 
Sbjct: 369 RLEELEKELEKALERLK----QLEEAIQELKEELAELSAALEEIQEELEELEKELEELER 424

Query: 407 AKEEVKELITTARRDYEQLQGEMTRLTQE----------NESAKEEVKEVLQALEELAVN 456
             EE++E I        QL+ +   + +            +   EE ++ L  L EL + 
Sbjct: 425 ELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELE 484

Query: 457 YDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKD 516
             ++    E +  E     EEL  +   L     EL ++++    + +   E L NLL++
Sbjct: 485 ELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEE 544

Query: 517 LCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDM 576
           L E+   +  +  +K          +E       +  ++ R  E  +  E++        
Sbjct: 545 LEELKEKLQLQ-QLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLK 603

Query: 577 AASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQ 636
                    S    +L ++  S          E ++ EEE E   ++L+ + E       
Sbjct: 604 ELEER---LSQLEELLQSLELSEA------ENELEEAEEELESELEKLNLQAELEELLQA 654

Query: 637 YAEKLKEQIMEQE-EVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRK 690
             E+L+E++ E E E+   L   +  E+ E+  ++L+ LE+ + +  + L  L K
Sbjct: 655 ALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLK 709

Length = 908

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 43.8 bits (104), Expect = 3e-04
 Identities = 54/288 (18%), Positives = 114/288 (39%), Gaps = 51/288 (17%)

Query: 377 MERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTAR-RDYEQLQGEMTRL--- 432
           M++V ++T  +   +++   +  L +      E++KE ++  R R    L  +++     
Sbjct: 6   MKKVLIVTL-KSYKDEV---LEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDK 61

Query: 433 ----TQENESAKEEVKEV-LQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNT 487
                 +    +EE K+V +++LEEL  + +++ +++E   KE + L EE++        
Sbjct: 62  LRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIE---KEIKELEEEIS-------- 110

Query: 488 TSTELQQIKDMSNHQKKRINEMLTNL---LKDLCEIGLVIGSEGDMKVTSDGAGKLEEEF 544
              EL+        + +R+ E   N    L  L     V    G +        KLE + 
Sbjct: 111 ---ELENEIKELEQEIERL-EPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDV 166

Query: 545 TVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILP-AIPGSGLMLG 603
                YIS        T K    V +    +++  +    E          +   G    
Sbjct: 167 ENV-EYIS--------TDKGYVYVVVVVLKELSDEVEE--ELKKLGFERLELEEEGT--- 212

Query: 604 SLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEV 651
              +E  ++++EE E + ++ +   EE+    + A+K  E+++   E 
Sbjct: 213 --PSELIREIKEELEEIEKERESLLEELK---ELAKKYLEELLALYEY 255

Length = 646

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 56/321 (17%), Positives = 122/321 (38%), Gaps = 55/321 (17%)

Query: 383 ITTARRDYEQLQGEMTRLTQENESAKEEVKEL---ITTARRDYEQLQGEMTRLTQENESA 439
           +       E+L+ E+  L  E  S ++ ++EL   +    R  E+L+ E+  L +E E  
Sbjct: 676 LAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQL 735

Query: 440 KEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIK--- 496
           +  ++E+ + LEEL    ++  + +E   +E E+L E L   +  +     + Q ++   
Sbjct: 736 QSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEEL 795

Query: 497 DMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKW 556
           +    + +     L  L             E +++       +LE+E  +  L     + 
Sbjct: 796 EELEEELEEAERRLDAL-------------ERELESLEQRRERLEQE--IEELEEEIEEL 840

Query: 557 RNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEE 616
                  E+E   L   ++                                 E+++LE+E
Sbjct: 841 EEKLDELEEELEELEKELEELKEEL----------------------EELEAEKEELEDE 878

Query: 617 RERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLED 676
            + L ++ +E +EE+ +      +LKE+I +              ER E+    L+ LE 
Sbjct: 879 LKELEEEKEELEEELRELESELAELKEEIEKLR------------ERLEELEAKLERLEV 926

Query: 677 TVTKELQTLHNLRKLFVQDQV 697
            + +  + L    +  ++ ++
Sbjct: 927 ELPELEEELEEEYEDTLETEL 947

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 29/233 (12%)

Query: 273 LLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSL 332
           L     R E    +L       ++++  +    +   Q+ +   ++    EE E+D  SL
Sbjct: 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKER---LEELEEDLSSL 749

Query: 333 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQ 392
              Q+I  +++ L +L    ++L  D   L   L  LE RL     R+  I         
Sbjct: 750 --EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQ-------- 797

Query: 393 LQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452
                     E    +EEV  +    R    +++ ++ RLT E E  ++E++E+ +   +
Sbjct: 798 ---------AELSKLEEEVSRIEARLR----EIEQKLNRLTLEKEYLEKEIQELQEQRID 844

Query: 453 LAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQI-KDMSNHQKK 504
           L        +E+E  N + E L EEL   +  L    + L  + K+    + +
Sbjct: 845 LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ 897

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 9e-04
 Identities = 54/256 (21%), Positives = 111/256 (43%), Gaps = 11/256 (4%)

Query: 262 EYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVT 321
           +Y++   E         + E+  ++L+ LED + +EL+    L KL  Q  +A   + + 
Sbjct: 169 KYKERKEEAE------RKLERTEENLERLED-LLEELEK--QLEKLERQAEKAERYQELK 219

Query: 322 AEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVK 381
           AE  E +   L    K+  L   L++L +   +L  +  +L+ EL + EK +      ++
Sbjct: 220 AELRELELALLLA--KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELE 277

Query: 382 LITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKE 441
            +     + ++   E+    +E E     ++E +     + E+L+  +  L ++ E+ KE
Sbjct: 278 ELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337

Query: 442 EVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNH 501
           E++E    LEEL     +  +  E   ++   L EEL      L     EL+       +
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN 397

Query: 502 QKKRINEMLTNLLKDL 517
           + + +   + +L + L
Sbjct: 398 ELEELKREIESLEERL 413

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 88/483 (18%), Positives = 184/483 (38%), Gaps = 59/483 (12%)

Query: 220 KLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLLLQT 276
           +L+EE       +  ++   + L  +   +E    E  K+  E E   KEL E +   + 
Sbjct: 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEE 294

Query: 277 NERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQR- 335
             +  +  ++       + K L  L        + ++   +K    EE +     L +R 
Sbjct: 295 YIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRL 354

Query: 336 ----------QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITT 385
                     ++    +  L++L K    L  +   L  EL +LEK      E +  IT 
Sbjct: 355 EELEERHELYEEAKAKKEELERLKKRLTGLTPE--KLEKELEELEKAKEEIEEEISKITA 412

Query: 386 ARRDYEQLQGEMTRLTQENESAK------------EEVKELITTARRDYEQLQGEMTRLT 433
              + ++   E+ +  +E + AK            E  KEL+     + ++++ E+  + 
Sbjct: 413 RIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIE 472

Query: 434 QENESAKEEVKEV---LQALEELAVNYDQKSQ--------------EVETKNKEFETLTE 476
           ++    ++E++E+   L+   EL    +   Q              E+E K +E+E L E
Sbjct: 473 EKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKE 532

Query: 477 ELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDG 536
           +L   +  + +   EL++++++   +   + + L  L ++L E+   +   G  +   + 
Sbjct: 533 KLIKLKGEIKSLKKELEKLEELKK-KLAELEKKLDELEEELAELLKELEELG-FESVEEL 590

Query: 537 AGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIP 596
             +L+E       Y+           +E E   L + +D A       E     +   + 
Sbjct: 591 EERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE 650

Query: 597 GSGLMLGSLSNEERQK--------LEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQ 648
                L    +EE  +        L  E   L  +L+E ++   +  +  EKLKE++ E+
Sbjct: 651 E----LEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706

Query: 649 EEV 651
           E+ 
Sbjct: 707 EKA 709

Length = 880

>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 390 YEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 449
              LQ E+  L Q+ E    E  +    ++   E  Q E+  L       +E+ +E+   
Sbjct: 144 LHALQQEVLTLKQQLELQAREKAQ----SQALAEAQQQELVALEGLAAELEEKQQELEAQ 199

Query: 450 LEELAVNYDQKSQEVETKNKEFE-------TLTEELT 479
           LE+L     + SQE + K KE          L+EE T
Sbjct: 200 LEQLQEKAAETSQERKQKRKEITDQAAKRLELSEEET 236

Length = 1123

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 63/302 (20%), Positives = 118/302 (39%), Gaps = 35/302 (11%)

Query: 219 GKLE---EEFTVARLYISKMKSEVKNLVARCTSM--ESSQAEEHKKAIEYEKELGETRLL 273
           GKLE   E  + ARL + ++ S+ +  + +  +   E  + + H++    E EL E    
Sbjct: 162 GKLEEYRERASDARLGVERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEE 221

Query: 274 LQT-NERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKS-VTAEESEDDGGS 331
           ++   E+REQAR+     ++ + +  +    L     + L+A I+    T  E+E +   
Sbjct: 222 IERYEEQREQARETRDEADEVLEEHEERREEL-----ETLEAEIEDLRETIAETEREREE 276

Query: 332 LAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYE 391
           LA+                          DLR  L +LE+     +    L        E
Sbjct: 277 LAEEV-----------------------RDLRERLEELEEERDDLLAEAGLDDADAEAVE 313

Query: 392 QLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 451
             + E+    +E     EE +        + E L+ +   L +  E  +EE  E+   LE
Sbjct: 314 ARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELE 373

Query: 452 ELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLT 511
           E     + + +E+E   +E E L E        L      L+++++  +  ++R  E+  
Sbjct: 374 EAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA 433

Query: 512 NL 513
            L
Sbjct: 434 TL 435

Length = 880

>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 14/85 (16%)

Query: 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPS-------GGEENGLSLGGKFYLFDKVF---- 63
           +++V  R RP N  E+  GSK IV+ P            +      K + FD  +    
Sbjct: 1  ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHD 60

Query: 64 --KPN-ATQEKVYDEAAKSIVSVQF 85
             P+ A+QE V+++  + ++   F
Sbjct: 61 SEDPHYASQEDVFEDLGRELLDHAF 85

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively. Length = 356

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 20/88 (22%), Positives = 46/88 (52%)

Query: 335 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQ 394
           +++++ L+  L +L + +++L ++ + L  EL +L+K L    +          +  +L+
Sbjct: 79  QEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELDEENRELR 138

Query: 395 GEMTRLTQENESAKEEVKELITTARRDY 422
            E+  L QENE+ + E + L    +R +
Sbjct: 139 EELAELKQENEALEAENERLQENEQRRW 166

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 51/279 (18%), Positives = 101/279 (36%), Gaps = 12/279 (4%)

Query: 242 LVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERRE-QARKDLKGLEDTVTKELQT 300
           L  R    E +      K  + E++L +    L+  +R E +AR  LK     + +    
Sbjct: 605 LRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNE 664

Query: 301 LHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNA 360
             +L+      +  R +++ T     D        Q+ +FLE   D      +      A
Sbjct: 665 QQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDF---RELRTERLA 721

Query: 361 DLRCELPKLEKRLRATMERV-KLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTAR 419
             +    +L+ +L      +    T A+   ++L+ +  R     +     VKEL    +
Sbjct: 722 KWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPNTVKEL----K 777

Query: 420 RDYEQLQGEMTRLTQENESAKEE---VKEVLQALEELAVNYDQKSQEVETKNKEFETLTE 476
           R  E+L+  + R+       +E    ++E     + L       + ++       E L +
Sbjct: 778 RQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSAEELQQ 837

Query: 477 ELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLK 515
           ELT           +L+Q +     Q  +++E+L  L  
Sbjct: 838 ELTRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRD 876

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	720
KOG0240|consensus	607		100.0
KOG0243|consensus	1041		100.0
KOG4280|consensus	574		100.0
KOG0245|consensus	1221		100.0
PLN03188	1320	kinesin-12 family protein; Provisional	100.0
cd01370	338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	100.0
KOG0242|consensus	675		100.0
cd01373	337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	100.0
KOG0241|consensus	1714		100.0
cd01369	325	KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy	100.0
cd01365	356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	100.0
cd01364	352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	100.0
cd01368	345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	100.0
cd01367	322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	100.0
cd01371	333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	100.0
cd01372	341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	100.0
cd01374	321	KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like	100.0
cd01376	319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	100.0
cd01366	329	KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/	100.0
KOG0239|consensus	670		100.0
cd01375	334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	100.0
smart00129	335	KISc Kinesin motor, catalytic domain. ATPase. Micr	100.0
KOG0247|consensus	809		100.0
KOG0244|consensus	913		100.0
cd00106	328	KISc Kinesin motor domain. This catalytic (head) d	100.0
KOG0246|consensus	676		100.0
PF00225	335	Kinesin: Kinesin motor domain; InterPro: IPR001752	100.0
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	100.0
cd01363	186	Motor_domain Myosin and Kinesin motor domain. Thes	100.0
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.55
PRK02224	880	chromosome segregation protein; Provisional	97.52
KOG0161|consensus	1930		97.47
PRK02224	880	chromosome segregation protein; Provisional	97.46
KOG0161|consensus	1930		97.34
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.23
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.2
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	97.19
PRK03918	880	chromosome segregation protein; Provisional	97.14
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.14
PRK11637	428	AmiB activator; Provisional	97.07
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.07
PRK03918	880	chromosome segregation protein; Provisional	97.06
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.06
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.05
KOG0977|consensus	546		97.01
KOG0996|consensus	1293		96.95
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.77
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.58
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.55
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.54
KOG4674|consensus	1822		96.53
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.52
PRK09039	343	hypothetical protein; Validated	96.49
KOG0250|consensus	1074		96.44
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.3
PRK04778	569	septation ring formation regulator EzrA; Provision	96.17
KOG1029|consensus	1118		96.14
KOG0977|consensus	546		96.13
KOG0933|consensus	1174		96.04
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.0
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.96
PRK11637	428	AmiB activator; Provisional	95.91
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	95.89
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.89
KOG0976|consensus	1265		95.85
KOG0996|consensus	1293		95.84
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.83
KOG0971|consensus	1243		95.8
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.75
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	95.74
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.65
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	95.52
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.45
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	95.42
KOG0612|consensus	1317		95.38
PRK04863	1486	mukB cell division protein MukB; Provisional	95.35
PRK04863	1486	mukB cell division protein MukB; Provisional	95.29
KOG0250|consensus	1074		95.11
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.01
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.0
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	94.93
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.88
KOG4643|consensus	1195		94.79
PRK10884	206	SH3 domain-containing protein; Provisional	94.52
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.43
KOG0933|consensus	1174		94.34
KOG0980|consensus	980		94.29
PHA02562	562	46 endonuclease subunit; Provisional	94.27
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	94.15
KOG0976|consensus	1265		94.02
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	93.88
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	93.86
KOG0994|consensus	1758		93.82
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.77
PHA02562	562	46 endonuclease subunit; Provisional	93.71
PRK01156	895	chromosome segregation protein; Provisional	93.65
KOG4674|consensus	1822		93.62
KOG0994|consensus	1758		93.6
KOG4302|consensus	660		93.56
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.51
COG5185	622	HEC1 Protein involved in chromosome segregation, i	93.4
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.37
KOG0971|consensus	1243		93.28
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.24
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.19
KOG4360|consensus	596		92.99
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	92.94
KOG0018|consensus	1141		92.94
KOG0288|consensus	459		92.9
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	92.9
PF10186	302	Atg14: UV radiation resistance protein and autopha	92.85
KOG0964|consensus	1200		92.53
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	92.31
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	92.08
KOG0995|consensus	581		91.89
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.86
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.8
KOG4643|consensus	1195		91.69
COG2433	652	Uncharacterized conserved protein [Function unknow	91.52
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	91.51
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.46
COG4942	420	Membrane-bound metallopeptidase [Cell division and	91.32
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	91.14
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	91.1
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	90.97
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	90.94
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	90.74
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	90.74
KOG0964|consensus	1200		90.72
KOG4593|consensus	716		90.67
KOG0980|consensus	980		90.66
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	90.43
PRK12704	520	phosphodiesterase; Provisional	90.4
PRK09039	343	hypothetical protein; Validated	90.4
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	90.2
KOG0946|consensus	970		90.08
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	90.01
PF10186	302	Atg14: UV radiation resistance protein and autopha	89.88
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	89.7
KOG1853|consensus	333		89.25
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	89.19
KOG0946|consensus	970		88.82
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	88.74
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	88.66
KOG1937|consensus	521		88.59
PRK04778	569	septation ring formation regulator EzrA; Provision	88.49
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	88.33
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	88.22
KOG0995|consensus	581		88.15
KOG2129|consensus	552		88.1
KOG0612|consensus	1317		87.62
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	87.49
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	87.21
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	87.12
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	86.38
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	86.29
PRK00106	535	hypothetical protein; Provisional	86.2
KOG4438|consensus	446		85.9
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.64
COG4372	499	Uncharacterized protein conserved in bacteria with	85.46
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	85.42
PRK10884	206	SH3 domain-containing protein; Provisional	85.41
PRK12704	520	phosphodiesterase; Provisional	85.26
PRK11281	1113	hypothetical protein; Provisional	85.18
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	85.1
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	85.08
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	84.96
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	84.7
KOG0249|consensus	916		84.7
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	84.69
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	84.49
PRK00106	535	hypothetical protein; Provisional	84.47
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	84.35
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	84.14
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	83.67
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	83.46
KOG0804|consensus	493		83.34
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	83.31
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	82.9
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	82.08
COG4477	570	EzrA Negative regulator of septation ring formatio	81.79
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	81.5
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	81.17
KOG0243|consensus	1041		81.11
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	80.96
KOG0963|consensus	629		80.93
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	80.92
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	80.7
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	80.59
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	80.54
PF14662	193	CCDC155: Coiled-coil region of CCDC155	80.35
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	80.25
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	80.21
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	80.16
KOG4302|consensus	660		80.09

>KOG0240|consensus

Probab=100.00  E-value=1.6e-89  Score=748.28  Aligned_cols=461  Identities=46%  Similarity=0.602  Sum_probs=406.7

Q ss_pred             CCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeCC----eeeecceecCCCCChHHHHHHhhhhcceeeec
Q psy5718          11 IAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG----KFYLFDKVFKPNATQEKVYDEAAKSIVSVQFV   86 (720)
Q Consensus        11 ~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~~----k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~   86 (720)
                      +.++|+|+|+||+||.+..|...++.+++.+.+..  .++.+.+    ++|.||+||+|+++|.+||..++.|+|++||.
T Consensus         3 d~~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~--~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~   80 (607)
T KOG0240|consen    3 DSAECSIKVVCRFRPLNGLENNLGSKFIDCFENGE--NTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLL   80 (607)
T ss_pred             CCCCCceEEEEEeecCCchhhhcCCcCccCCCCCc--ceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhc
Confidence            45789999999999999999999999999888842  3777765    89999999999999999999999999999999


Q ss_pred             C------------------------CCCceeehhhhhhhhhhhhhhcccccceeE-------------------------
Q psy5718          87 D------------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL-------------------------  117 (720)
Q Consensus        87 G------------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v-------------------------  117 (720)
                      |                        ++...|||||++++||++|+.+..+.+|+|                         
T Consensus        81 GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsv  160 (607)
T KOG0240|consen   81 GYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSV  160 (607)
T ss_pred             ccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCcee
Confidence            8                        445779999999999999999999989888                         


Q ss_pred             -------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCC
Q psy5718         118 -------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGS  190 (720)
Q Consensus       118 -------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGS  190 (720)
                             +||+|+++++|.++++++++|+.|..+|++++|+||.+|||||+||+|+|.|.+..+.....|+|+|||||||
T Consensus       161 heDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLaGS  240 (607)
T KOG0240|consen  161 HEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLAGS  240 (607)
T ss_pred             ecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcccc
Confidence                   8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccccCCcccHHHHHh
Q psy5718         191 EKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKK  259 (720)
Q Consensus       191 Er~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETls  259 (720)
                      |+++++|+.|..+.|+++||+||+|||+|  ||++|. +|||||||||||||||        ++|+||||+..|..||.+
T Consensus       241 EkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~S  320 (607)
T KOG0240|consen  241 EKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKS  320 (607)
T ss_pred             cccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccccc
Confidence            99999999999999999999999999999  999995 9999999999999999        899999999999999999


Q ss_pred             HHHHHHHhccccccchhhhHH---------HHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccccccccccC
Q psy5718         260 AIEYEKELGETRLLLQTNERR---------EQAR---KDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESED  327 (720)
Q Consensus       260 TL~fa~rak~Ikn~~~vN~~~---------~~~~---~~Lk~ei~~Lk~EL~~l~nlrk~~~qdl~~r~g~~~~~~e~~~  327 (720)
                      ||+||.||+.|+|.+.+|...         +.+.   ..+...++.+..+|.+|             +.|..++.+++..
T Consensus       321 Tl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~-------------~~~E~~~~de~~~  387 (607)
T KOG0240|consen  321 TLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRW-------------RNGEEVKEDEDFS  387 (607)
T ss_pred             chhhccccccccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh-------------cccCcccchhhhh
Confidence            999999999999999999922         2222   34445555556666667             7788777666554


Q ss_pred             CCCchHHHhHHHHHhhhhHHHHHHHHHHHhhhhcccccchhHHHhh--hhhHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q psy5718         328 DGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL--RATMERVKLITTARRDYEQLQG---EMTRLTQ  402 (720)
Q Consensus       328 ~~~~~~~~qki~~le~~Le~L~~~~~qLv~dn~~l~~elp~~~~~~--~~~~Er~k~~ee~~~l~~ql~~---Ei~~~~q  402 (720)
                      ....    .+...                     ..++.......+  ..+.+..++.+++..+|+|+|+   ++|+++|
T Consensus       388 ~~~~----~k~~~---------------------~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sq  442 (607)
T KOG0240|consen  388 LKEE----AKMSA---------------------ILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQ  442 (607)
T ss_pred             HHHH----HHhhh---------------------hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2211    10000                     000000000111  2567788899999999999888   9999999


Q ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy5718         403 ENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELT  479 (720)
Q Consensus       403 ~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~  479 (720)
                      +.++|+.|+   +++++..+++|+..|.++.++|++++.++++++++++||++|++|||+++++.+.+...+        
T Consensus       443 L~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~~~~~~n--------  514 (607)
T KOG0240|consen  443 LMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQKSEEKESKLSQN--------  514 (607)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhh--------
Confidence            999999999   899999999999999999999999999999999999999999999999999988877666        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCC
Q psy5718         480 LKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSE  527 (720)
Q Consensus       480 ~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~  527 (720)
                              +.+||+.+++.++||++||+++++.|++|+++||..+|++
T Consensus       515 --------~~sel~sl~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~  554 (607)
T KOG0240|consen  515 --------LKSELQSLQEPSEHQSKRITELLSELRKDLGEIGWKIGTS  554 (607)
T ss_pred             --------hHHHHHhhhhcccchhHHHHHHHHHHHhhhccccccccCC
Confidence                    8899999999999999999999999999999999999998

>KOG0243|consensus

Probab=100.00  E-value=3.1e-66  Score=600.69  Aligned_cols=439  Identities=25%  Similarity=0.314  Sum_probs=342.0

Q ss_pred             CCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC------CeeeecceecCCCCChHHHHHHhhhhcceeee
Q psy5718          12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG------GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQF   85 (720)
Q Consensus        12 ~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~------~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl   85 (720)
                      ..+.||+|+|||||+++.|....+..+|..++...++.+..+      .+.|+||+||||.+.|.+||+.++.|+|..|+
T Consensus        46 e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl  125 (1041)
T KOG0243|consen   46 EKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVL  125 (1041)
T ss_pred             CCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHh
Confidence            344799999999999999999899999998886544444433      47899999999999999999999999999999


Q ss_pred             cC-----------------------------CCCceeehhhhhhhhhhhhhhcccccceeE-------------------
Q psy5718          86 VD-----------------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL-------------------  117 (720)
Q Consensus        86 ~G-----------------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v-------------------  117 (720)
                      .|                             .+...|||||++.+||+.+......+.+.|                   
T Consensus       126 ~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~  205 (1041)
T KOG0243|consen  126 EGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDT  205 (1041)
T ss_pred             ccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccc
Confidence            99                             578899999999999999987665444444                   


Q ss_pred             -------------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC---c
Q psy5718         118 -------------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN---E  175 (720)
Q Consensus       118 -------------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~---~  175 (720)
                                         ++|+|+.+++|.|+.|++.+|..|...|++++|.||.+|||||+||+|+|.-+....   +
T Consensus       206 ~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~gee  285 (1041)
T KOG0243|consen  206 SDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEE  285 (1041)
T ss_pred             cccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchh
Confidence                               899999999999999999999999999999999999999999999999997654432   3


Q ss_pred             ccccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhc
Q psy5718         176 KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVAR  245 (720)
Q Consensus       176 ~~~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~  245 (720)
                      .+..|||+||||||||.++++|+.+.|.+|+..||+||++||+|  ||.++.+|||||+|||||||||        +||+
T Consensus       286 lvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIA  365 (1041)
T KOG0243|consen  286 LVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIA  365 (1041)
T ss_pred             hHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEE
Confidence            57789999999999999999999999999999999999999999  9999999999999999999999        8999


Q ss_pred             cccCCcccHHHHHhHHHHHHHhccccccchhhhHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccccccc
Q psy5718         246 CTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQAR--KDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAE  323 (720)
Q Consensus       246 ~iSPs~~~~~ETlsTL~fa~rak~Ikn~~~vN~~~~~~~--~~Lk~ei~~Lk~EL~~l~nlrk~~~qdl~~r~g~~~~~~  323 (720)
                      ||||+..+++||+|||.||.|||+|+|+|.+|.+..+..  ++|-.+|++|+.+|...           +.++|.+.+.+
T Consensus       366 TiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~Aa-----------ReKnGvyisee  434 (1041)
T KOG0243|consen  366 TISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAA-----------REKNGVYISEE  434 (1041)
T ss_pred             EeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHh-----------HhhCceEechH
Confidence            999999999999999999999999999999999776655  99999999999999887           44678887765


Q ss_pred             cccC-CCCchHHHhHHHHHhhhhHHHHHHHHHHHhhhhcccccchhHHHhhhhhHHHHHHHHHHHHHHHHHHH---HHHH
Q psy5718         324 ESED-DGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQG---EMTR  399 (720)
Q Consensus       324 e~~~-~~~~~~~~qki~~le~~Le~L~~~~~qLv~dn~~l~~elp~~~~~~~~~~Er~k~~ee~~~l~~ql~~---Ei~~  399 (720)
                      -... ++.......+|+.++..++.+.+....+.....-.             ...+...-++..+.-..|+.   ++..
T Consensus       435 ~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~-------------~~~~~~l~~~~~~~k~~L~~~~~el~~  501 (1041)
T KOG0243|consen  435 RYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQ-------------LEIKELLKEEKEKLKSKLQNKNKELES  501 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5422 12222444556666666655554444433322100             00011111111122222222   3333


Q ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy5718         400 LTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETL  474 (720)
Q Consensus       400 ~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l  474 (720)
                      ...+..+++.++   ++.+.........+......|+..++.+..++..+...|..+...+|.....+.....++-..
T Consensus       502 ~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~  579 (1041)
T KOG0243|consen  502 LKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSEN  579 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHH
Confidence            333333333333   444555555556777778899999999999999999988877666555555555444444333

>KOG4280|consensus

Probab=100.00  E-value=1.2e-61  Score=542.45  Aligned_cols=288  Identities=30%  Similarity=0.325  Sum_probs=261.2

Q ss_pred             CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------CCeeeecceecCCCCChHHHHHHhhhhcceeeec
Q psy5718          14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFV   86 (720)
Q Consensus        14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~   86 (720)
                      .++|+|+||+||++..+...+...++.+++......+..       .+++|+||+||+++++|++||+.++.|+|++|++
T Consensus         4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~   83 (574)
T KOG4280|consen    4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE   83 (574)
T ss_pred             ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence            478999999999999888888888887777663333322       2478999999999999999999999999999999


Q ss_pred             C----------------------CCCceeehhhhhhhhhhhhhhcccccceeE---------------------------
Q psy5718          87 D----------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL---------------------------  117 (720)
Q Consensus        87 G----------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v---------------------------  117 (720)
                      |                      ++...|||||++.+||.+|....+...|.+                           
T Consensus        84 GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lr  163 (574)
T KOG4280|consen   84 GYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELR  163 (574)
T ss_pred             ccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceee
Confidence            9                      367899999999999999988765544444                           


Q ss_pred             ------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEe-eec--CCcccccceeeeeecc
Q psy5718         118 ------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQ-ENL--ENEKKLSGKLYLVDLA  188 (720)
Q Consensus       118 ------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q-~~~--~~~~~~~skL~lVDLA  188 (720)
                            +||+|++++.|.|+++++.++..|.++|++++|+||..|||||+||+|+|++ ...  +.....+|+|+|||||
T Consensus       164 e~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLa  243 (574)
T KOG4280|consen  164 EDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLA  243 (574)
T ss_pred             EcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeecc
Confidence                  8999999999999999999999999999999999999999999999999999 322  2346788999999999


Q ss_pred             CCcccccCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccccCCcccHHHH
Q psy5718         189 GSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTSMESSQAEEH  257 (720)
Q Consensus       189 GSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ET  257 (720)
                      ||||.+++|+.|.+++||.+||+||++||+|  ||+++. +||||||||||+||||        +||+||||++++++||
T Consensus       244 gsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ET  323 (574)
T KOG4280|consen  244 GSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEET  323 (574)
T ss_pred             chhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHH
Confidence            9999999999999999999999999999999  999998 4999999999999999        9999999999999999


Q ss_pred             HhHHHHHHHhccccccchhhhHHH-HHHHHHHHHHHHHHHHHHHH
Q psy5718         258 KKAIEYEKELGETRLLLQTNERRE-QARKDLKGLEDTVTKELQTL  301 (720)
Q Consensus       258 lsTL~fa~rak~Ikn~~~vN~~~~-~~~~~Lk~ei~~Lk~EL~~l  301 (720)
                      ++||+||+|||.|+|.|.+|+++. .....|+.+|+.|+.++...
T Consensus       324 lsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~~  368 (574)
T KOG4280|consen  324 LSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDPG  368 (574)
T ss_pred             HHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999887 66699999999999999876

>KOG0245|consensus

Probab=100.00  E-value=2.5e-60  Score=541.77  Aligned_cols=286  Identities=25%  Similarity=0.312  Sum_probs=255.3

Q ss_pred             CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC-----CeeeecceecCCC-------CChHHHHHHhhhhcc
Q psy5718          14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG-----GKFYLFDKVFKPN-------ATQEKVYDEAAKSIV   81 (720)
Q Consensus        14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~-----~k~F~FD~VF~~~-------asQeeVY~~~~~plV   81 (720)
                      ..+|+|+||||||+..|....++.++.+.++..  ++..+     ...|+||++||..       ++|..||+.++.|++
T Consensus         3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~t--tii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL   80 (1221)
T KOG0245|consen    3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTT--TIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREML   80 (1221)
T ss_pred             CCceEEEEEeccchhhhhhcccceEEEecCCce--eeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHH
Confidence            467999999999999999988999999988873  33222     2569999999873       889999999999999


Q ss_pred             eeeecC-----------------------CCCceeehhhhhhhhhhhhhhcc-cccceeE--------------------
Q psy5718          82 SVQFVD-----------------------ADQYMVSVDRLRSDHQLKASTMC-EHSLMHL--------------------  117 (720)
Q Consensus        82 ~~vl~G-----------------------~~~~~GIIpRav~~LF~~i~~~~-~~~~~~v--------------------  117 (720)
                      +++|+|                       .++++|||||+|++||.+|.... ....|.|                    
T Consensus        81 ~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~  160 (1221)
T KOG0245|consen   81 DHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK  160 (1221)
T ss_pred             HHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC
Confidence            999999                       45899999999999999997643 2344444                    


Q ss_pred             --------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCc----cccc
Q psy5718         118 --------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENE----KKLS  179 (720)
Q Consensus       118 --------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~----~~~~  179 (720)
                                    |||.+|+.+.|+|+.|+.++|..|++.|++++|+||..|||||+||+|.+.|+.....    ....
T Consensus       161 ~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~  240 (1221)
T KOG0245|consen  161 SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKV  240 (1221)
T ss_pred             CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceee
Confidence                          9999999999999999999999999999999999999999999999999999776532    5678


Q ss_pred             ceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC-------cccccccchhhhhhhh--------h
Q psy5718         180 GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-------TVARLYISKMKSEVKN--------L  242 (720)
Q Consensus       180 skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-------~hIPYRdSKLTrLLqd--------~  242 (720)
                      |+|+|||||||||.+.+|+.|.|++||.+|||||++||.|  ||++..       .+||||||.|||||++        .
T Consensus       241 SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTa  320 (1221)
T KOG0245|consen  241 SKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTA  320 (1221)
T ss_pred             eeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhh
Confidence            9999999999999999999999999999999999999999  887632       5999999999999999        8


Q ss_pred             hhccccCCcccHHHHHhHHHHHHHhccccccchhhhHHHH-HHHHHHHHHHHHHHHHHHH
Q psy5718         243 VARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQ-ARKDLKGLEDTVTKELQTL  301 (720)
Q Consensus       243 mI~~iSPs~~~~~ETlsTL~fa~rak~Ikn~~~vN~~~~~-~~~~Lk~ei~~Lk~EL~~l  301 (720)
                      ||+++||++.||+||||||+||.|||.|+|.++||+++.. .|++|+.+|.+|+.-|..-
T Consensus       321 MIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~~  380 (1221)
T KOG0245|consen  321 MIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRAQ  380 (1221)
T ss_pred             hhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999998764 4599999999988877554

>PLN03188 kinesin-12 family protein; Provisional

Probab=100.00  E-value=2.5e-57  Score=530.84  Aligned_cols=283  Identities=25%  Similarity=0.327  Sum_probs=246.0

Q ss_pred             CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeCCeeeecceecCCCCChHHHHHHhhhhcceeeecC------
Q psy5718          14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD------   87 (720)
Q Consensus        14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G------   87 (720)
                      .++|+|||||||+++.|  .+...++.+ .++   .+.+.++.|.||+||+++++|.+||+.++.|+|+++|+|      
T Consensus        97 ds~VkV~VRVRPl~~~E--~g~~iV~~~-s~d---sl~I~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIF  170 (1320)
T PLN03188         97 DSGVKVIVRMKPLNKGE--EGEMIVQKM-SND---SLTINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVF  170 (1320)
T ss_pred             CCCeEEEEEcCCCCCcc--CCCeeEEEc-CCC---eEEEeCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceee
Confidence            57999999999999875  344444443 333   677788999999999999999999999999999999999      


Q ss_pred             --------------C-----------CCceeehhhhhhhhhhhhhhcc-----cccceeE--------------------
Q psy5718          88 --------------A-----------DQYMVSVDRLRSDHQLKASTMC-----EHSLMHL--------------------  117 (720)
Q Consensus        88 --------------~-----------~~~~GIIpRav~~LF~~i~~~~-----~~~~~~v--------------------  117 (720)
                                    +           ...+|||||++.+||..+....     ..+.|.+                    
T Consensus       171 AYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~  250 (1320)
T PLN03188        171 AYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ  250 (1320)
T ss_pred             cCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc
Confidence                          1           2468999999999999886421     1112211                    


Q ss_pred             ------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC----Ccccccce
Q psy5718         118 ------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE----NEKKLSGK  181 (720)
Q Consensus       118 ------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~----~~~~~~sk  181 (720)
                                  +||.|++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+....    ......|+
T Consensus       251 k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~Sk  330 (1320)
T PLN03188        251 KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSR  330 (1320)
T ss_pred             CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEE
Confidence                        79999999999999999999999999999999999999999999999999875432    12356799


Q ss_pred             eeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--cccc-----CCcccccccchhhhhhhh--------hhhcc
Q psy5718         182 LYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEE-----EFTVARLYISKMKSEVKN--------LVARC  246 (720)
Q Consensus       182 L~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~-----~~~hIPYRdSKLTrLLqd--------~mI~~  246 (720)
                      |+|||||||||+.++++.|.+++|+++||+||++||+|  +|+.     +..||||||||||+||||        +||+|
T Consensus       331 LnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~  410 (1320)
T PLN03188        331 INLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCA  410 (1320)
T ss_pred             EEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEe
Confidence            99999999999999999999999999999999999999  8864     237999999999999999        89999


Q ss_pred             ccCCcccHHHHHhHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         247 TSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLH  302 (720)
Q Consensus       247 iSPs~~~~~ETlsTL~fa~rak~Ikn~~~vN~~~~~~~~~Lk~ei~~Lk~EL~~l~  302 (720)
                      |||+..+++||++||+||+||+.|+|.|.+|......++.|+..|..|+.||.++.
T Consensus       411 VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK  466 (1320)
T PLN03188        411 ISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVK  466 (1320)
T ss_pred             cCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999777777778888888888888774

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup

Probab=100.00  E-value=2.8e-55  Score=475.95  Aligned_cols=252  Identities=32%  Similarity=0.396  Sum_probs=230.5

Q ss_pred             CEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-----------------CCeeeecceecCCCCChHHHHHHhhh
Q psy5718          16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-----------------GGKFYLFDKVFKPNATQEKVYDEAAK   78 (720)
Q Consensus        16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-----------------~~k~F~FD~VF~~~asQeeVY~~~~~   78 (720)
                      +|+|||||||+++.|...+...++.+.++.   ++.+                 ..+.|.||+||+++++|++||+.++.
T Consensus         1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~   77 (338)
T cd01370           1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDR---MLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTK   77 (338)
T ss_pred             CeEEEEEcCCCChhhhhcCCceEEEEcCCC---EEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHH
Confidence            599999999999999888888888887764   2222                 24789999999999999999999999


Q ss_pred             hcceeeecC---------------------CCCceeehhhhhhhhhhhhhhcccccceeE--------------------
Q psy5718          79 SIVSVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL--------------------  117 (720)
Q Consensus        79 plV~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v--------------------  117 (720)
                      |+|+++++|                     ++..+|||||++++||..+........+.+                    
T Consensus        78 plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~  157 (338)
T cd01370          78 PLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSS  157 (338)
T ss_pred             HHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCC
Confidence            999999999                     557899999999999999987654444333                    


Q ss_pred             ------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC---Cccccccee
Q psy5718         118 ------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---NEKKLSGKL  182 (720)
Q Consensus       118 ------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~---~~~~~~skL  182 (720)
                                  ++|+|++++.|.|+++++.+|..|.++|++++|.+|..|||||+||+|+|.+.+..   +.....|+|
T Consensus       158 ~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l  237 (338)
T cd01370         158 GPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKL  237 (338)
T ss_pred             CCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEE
Confidence                        79999999999999999999999999999999999999999999999999998876   456788999


Q ss_pred             eeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC---cccccccchhhhhhhh--------hhhccccC
Q psy5718         183 YLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF---TVARLYISKMKSEVKN--------LVARCTSM  249 (720)
Q Consensus       183 ~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~---~hIPYRdSKLTrLLqd--------~mI~~iSP  249 (720)
                      +|||||||||.+++++.|.+++|+++||+||++|++|  +|+.+.   .||||||||||+||+|        +||+||||
T Consensus       238 ~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp  317 (338)
T cd01370         238 SLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISP  317 (338)
T ss_pred             EEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCC
Confidence            9999999999999999999999999999999999999  998887   8999999999999999        89999999


Q ss_pred             CcccHHHHHhHHHHHHHhccc
Q psy5718         250 ESSQAEEHKKAIEYEKELGET  270 (720)
Q Consensus       250 s~~~~~ETlsTL~fa~rak~I  270 (720)
                      +..+++||++||+||+|||+|
T Consensus       318 ~~~~~~eTl~TL~fa~ra~~I  338 (338)
T cd01370         318 SSSHYEETHNTLKYANRAKNI  338 (338)
T ss_pred             chhhHHHHHHHHHHHHHhccC
Confidence            999999999999999999987

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec

>KOG0242|consensus

Probab=100.00  E-value=1.4e-55  Score=510.12  Aligned_cols=287  Identities=31%  Similarity=0.359  Sum_probs=251.9

Q ss_pred             CCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC-------CeeeecceecCCCCChHHHHHHhhhhcceeee
Q psy5718          13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG-------GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQF   85 (720)
Q Consensus        13 ~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~-------~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl   85 (720)
                      ....|.|+|||||+++.+...+....|...++.........       ...|.||+||+++++|++||+..++|+|.+|+
T Consensus         4 ~~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l   83 (675)
T KOG0242|consen    4 TEEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVL   83 (675)
T ss_pred             ccceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHh
Confidence            45789999999999998766666666666666521111111       27899999999999999999999999999999


Q ss_pred             cC---------------------CCCceeehhhhhhhhhhhhhhcccccceeE---------------------------
Q psy5718          86 VD---------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL---------------------------  117 (720)
Q Consensus        86 ~G---------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v---------------------------  117 (720)
                      .|                     ....|||||+++.+||..|.... ...|.+                           
T Consensus        84 ~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irE  162 (675)
T KOG0242|consen   84 EGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDGGDLRLRE  162 (675)
T ss_pred             cCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCCCCceEeE
Confidence            99                     56789999999999999998755 333333                           


Q ss_pred             -----EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCcc
Q psy5718         118 -----IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK  192 (720)
Q Consensus       118 -----~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr  192 (720)
                           ++|+||+++.|.|++++..+|..|..+|+++.|++|..|||||+||+|.|.+.....+. ..|+|+|||||||||
T Consensus       163 D~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDLAGSER  241 (675)
T KOG0242|consen  163 DSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDLAGSER  241 (675)
T ss_pred             cCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhhhhhhh
Confidence                 89999999999999999999999999999999999999999999999999998766543 779999999999999


Q ss_pred             cccCCCcccchHHhhhhccCCccccCc--ccccCC--cccccccchhhhhhhh--------hhhccccCCcccHHHHHhH
Q psy5718         193 VSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF--TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKA  260 (720)
Q Consensus       193 ~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~--~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsT  260 (720)
                      ++++++.|.|++||++||+||++||+|  +|+++.  .||||||||||||||+        .|||||+|+..+++||.+|
T Consensus       242 as~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nT  321 (675)
T KOG0242|consen  242 ASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNT  321 (675)
T ss_pred             hhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHH
Confidence            999999999999999999999999999  999984  8999999999999999        8999999999999999999


Q ss_pred             HHHHHHhccccccchhhhHH--HHHHHHHHHHHHHHHHHHHHH
Q psy5718         261 IEYEKELGETRLLLQTNERR--EQARKDLKGLEDTVTKELQTL  301 (720)
Q Consensus       261 L~fa~rak~Ikn~~~vN~~~--~~~~~~Lk~ei~~Lk~EL~~l  301 (720)
                      |.||+|||.|++.+.+|...  ......++.++..|+.++..+
T Consensus       322 L~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~  364 (675)
T KOG0242|consen  322 LKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERL  364 (675)
T ss_pred             HHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhh
Confidence            99999999999999999822  233355688999999998876

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup

Probab=100.00  E-value=1.1e-54  Score=470.98  Aligned_cols=254  Identities=28%  Similarity=0.327  Sum_probs=221.9

Q ss_pred             CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee--CCeeeecceecCCCCChHHHHHHhhhhcceeeecC-----
Q psy5718          15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL--GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD-----   87 (720)
Q Consensus        15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~--~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G-----   87 (720)
                      ++|+|+|||||+++.|...+...++....++.  .+..  ..+.|.||+||+++++|++||+.++.|+|+++|+|     
T Consensus         1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~--~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti   78 (337)
T cd01373           1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDT--LVWHSHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSI   78 (337)
T ss_pred             CCeEEEEEcCcCChhhcccCCCeEEEEcCCCc--EEeeCCCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeE
Confidence            47999999999999987766777777665541  2222  24899999999999999999999999999999999     


Q ss_pred             ----------------C--------CCceeehhhhhhhhhhhhhhcc----cccceeE----------------------
Q psy5718          88 ----------------A--------DQYMVSVDRLRSDHQLKASTMC----EHSLMHL----------------------  117 (720)
Q Consensus        88 ----------------~--------~~~~GIIpRav~~LF~~i~~~~----~~~~~~v----------------------  117 (720)
                                      +        ...+|||||++++||..+....    ....|.+                      
T Consensus        79 ~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~  158 (337)
T cd01373          79 FAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRN  158 (337)
T ss_pred             EEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCC
Confidence                            1        1368999999999999886431    1122221                      


Q ss_pred             ----------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCc--ccccceeeee
Q psy5718         118 ----------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENE--KKLSGKLYLV  185 (720)
Q Consensus       118 ----------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~--~~~~skL~lV  185 (720)
                                ++|+|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+....  ....|+|+||
T Consensus       159 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~V  238 (337)
T cd01373         159 LKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLV  238 (337)
T ss_pred             ceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEE
Confidence                      7899999999999999999999999999999999999999999999999998765443  3567999999


Q ss_pred             eccCCcccccCCCcccchHHhhhhccCCccccCc--cccc----CCcccccccchhhhhhhh--------hhhccccCCc
Q psy5718         186 DLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEE----EFTVARLYISKMKSEVKN--------LVARCTSMES  251 (720)
Q Consensus       186 DLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~----~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~  251 (720)
                      |||||||..++++.|.+++|+++||+||++|++|  +|++    +..||||||||||+||+|        +||+||||+.
T Consensus       239 DLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~  318 (337)
T cd01373         239 DLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSS  318 (337)
T ss_pred             ECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCc
Confidence            9999999999999999999999999999999999  8864    348999999999999999        8999999999


Q ss_pred             ccHHHHHhHHHHHHHhccc
Q psy5718         252 SQAEEHKKAIEYEKELGET  270 (720)
Q Consensus       252 ~~~~ETlsTL~fa~rak~I  270 (720)
                      .+++||++||+||+|||.|
T Consensus       319 ~~~~eTl~TL~fa~rak~I  337 (337)
T cd01373         319 KCFGETLSTLKFAQRAKLI  337 (337)
T ss_pred             ccHHHHHHHHHHHHHhhcC
Confidence            9999999999999999987

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second

>KOG0241|consensus

Probab=100.00  E-value=4.3e-53  Score=474.15  Aligned_cols=288  Identities=27%  Similarity=0.326  Sum_probs=254.2

Q ss_pred             CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceee---------eCCeeeecceecCCC-------CChHHHHHHhh
Q psy5718          14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLS---------LGGKFYLFDKVFKPN-------ATQEKVYDEAA   77 (720)
Q Consensus        14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~---------~~~k~F~FD~VF~~~-------asQeeVY~~~~   77 (720)
                      ..+|||+|||||++.+|.+-..+++|.++.++......         -++++|.||++|++.       ++|++||..++
T Consensus         3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG   82 (1714)
T KOG0241|consen    3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG   82 (1714)
T ss_pred             CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence            46799999999999999988888888888776221111         125899999999874       78999999999


Q ss_pred             hhcceeeecC---------------------CCCceeehhhhhhhhhhhhhhcc-cccceeE------------------
Q psy5718          78 KSIVSVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMC-EHSLMHL------------------  117 (720)
Q Consensus        78 ~plV~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~-~~~~~~v------------------  117 (720)
                      ..+|+.+|+|                     ....+|||||++..||..|.... ++..|.|                  
T Consensus        83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP  162 (1714)
T KOG0241|consen   83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP  162 (1714)
T ss_pred             hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence            9999999999                     56899999999999999997643 3344444                  


Q ss_pred             ----------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC----ccc
Q psy5718         118 ----------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN----EKK  177 (720)
Q Consensus       118 ----------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~----~~~  177 (720)
                                      +||.||++..|.|++++-.++..|+++|++++|+||..|||||+||.|.|.|.-.+.    ...
T Consensus       163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge  242 (1714)
T KOG0241|consen  163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE  242 (1714)
T ss_pred             CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence                            899999999999999999999999999999999999999999999999999865442    235


Q ss_pred             ccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC------cccccccchhhhhhhh--------
Q psy5718         178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF------TVARLYISKMKSEVKN--------  241 (720)
Q Consensus       178 ~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~------~hIPYRdSKLTrLLqd--------  241 (720)
                      ..|+|.|||||||||.+++|+.|.+++||.+||+||++||.|  ||++..      ++||||||.||+||+|        
T Consensus       243 KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrT  322 (1714)
T KOG0241|consen  243 KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRT  322 (1714)
T ss_pred             heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCcee
Confidence            579999999999999999999999999999999999999999  887643      6999999999999999        


Q ss_pred             hhhccccCCcccHHHHHhHHHHHHHhccccccchhhhHHHHHH-HHHHHHHHHHHHHHHHH
Q psy5718         242 LVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERREQAR-KDLKGLEDTVTKELQTL  301 (720)
Q Consensus       242 ~mI~~iSPs~~~~~ETlsTL~fa~rak~Ikn~~~vN~~~~~~~-~~Lk~ei~~Lk~EL~~l  301 (720)
                      +||+||||+..||+||++||+||.|||.|+|+..+|.++...+ ++|+.+++.|...|...
T Consensus       323 vMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~a  383 (1714)
T KOG0241|consen  323 VMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQA  383 (1714)
T ss_pred             EEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhh
Confidence            8999999999999999999999999999999999999877655 88888888888777553

>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

Probab=100.00  E-value=3.6e-53  Score=457.10  Aligned_cols=253  Identities=49%  Similarity=0.655  Sum_probs=234.1

Q ss_pred             CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC----CeeeecceecCCCCChHHHHHHhhhhcceeeecC---
Q psy5718          15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG----GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD---   87 (720)
Q Consensus        15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~----~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G---   87 (720)
                      ++|+|+|||||+++.|..++...++.++++.   ++.+.    .+.|.||+||+++++|++||+.++.|+|+.+++|   
T Consensus         2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~---~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~   78 (325)
T cd01369           2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGED---TVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNG   78 (325)
T ss_pred             CCeEEEEEcCcCChhhhccCCceEEEEcCCC---EEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccc
Confidence            6899999999999999878888999998875   55554    5899999999999999999999999999999999   


Q ss_pred             ------------------CC---CceeehhhhhhhhhhhhhhcccccceeE-----------------------------
Q psy5718          88 ------------------AD---QYMVSVDRLRSDHQLKASTMCEHSLMHL-----------------------------  117 (720)
Q Consensus        88 ------------------~~---~~~GIIpRav~~LF~~i~~~~~~~~~~v-----------------------------  117 (720)
                                        +.   ..+|||||++++||..+........|.+                             
T Consensus        79 ~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~  158 (325)
T cd01369          79 TIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDK  158 (325)
T ss_pred             eEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcC
Confidence                              22   3789999999999999877655444333                             


Q ss_pred             ---EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCcccc
Q psy5718         118 ---IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVS  194 (720)
Q Consensus       118 ---~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr~~  194 (720)
                         ++++|++++.|.|++++..+|..|.++|++++|.+|..|||||+||+|+|.+.+........|+|+||||||||+..
T Consensus       159 ~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE~~~  238 (325)
T cd01369         159 NRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEKVS  238 (325)
T ss_pred             CCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCCccc
Confidence               78999999999999999999999999999999999999999999999999999888888889999999999999999


Q ss_pred             cCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHHH
Q psy5718         195 KTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIEY  263 (720)
Q Consensus       195 kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~f  263 (720)
                      ++++.|.+++|++.||+||++|++|  +|+++. .|||||||+||+||+|        +||+||||+..+++||++||+|
T Consensus       239 ~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~  318 (325)
T cd01369         239 KTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRF  318 (325)
T ss_pred             ccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHH
Confidence            9999999999999999999999999  999988 9999999999999999        9999999999999999999999


Q ss_pred             HHHhccc
Q psy5718         264 EKELGET  270 (720)
Q Consensus       264 a~rak~I  270 (720)
                      |+|||+|
T Consensus       319 a~r~~~i  325 (325)
T cd01369         319 GARAKTI  325 (325)
T ss_pred             HHHhhcC
Confidence            9999986

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins

Probab=100.00  E-value=3.5e-53  Score=462.65  Aligned_cols=261  Identities=30%  Similarity=0.375  Sum_probs=232.9

Q ss_pred             CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee---------CCeeeecceecCCC-------CChHHHHHHhhh
Q psy5718          15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL---------GGKFYLFDKVFKPN-------ATQEKVYDEAAK   78 (720)
Q Consensus        15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~---------~~k~F~FD~VF~~~-------asQeeVY~~~~~   78 (720)
                      ++|+|+|||||++..|...+...++.+++..  .++..         ..+.|.||+|||+.       ++|++||+.++.
T Consensus         1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~--v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~   78 (356)
T cd01365           1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKV--TTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR   78 (356)
T ss_pred             CCEEEEEEeCcCChhhhccCCceEEEECCCE--EEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence            4799999999999999888888888888743  23222         24689999999999       999999999999


Q ss_pred             hcceeeecC---------------------CCCceeehhhhhhhhhhhhhhccc-ccceeE-------------------
Q psy5718          79 SIVSVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMCE-HSLMHL-------------------  117 (720)
Q Consensus        79 plV~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~~-~~~~~v-------------------  117 (720)
                      |+|++++.|                     +...+|||||++++||..+..... ...+.+                   
T Consensus        79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~  158 (356)
T cd01365          79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPK  158 (356)
T ss_pred             HHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCC
Confidence            999999999                     456899999999999998865433 112211                   


Q ss_pred             ----------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC----Cccc
Q psy5718         118 ----------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE----NEKK  177 (720)
Q Consensus       118 ----------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~----~~~~  177 (720)
                                      ++|+|++++.|.|++++..+|..|.++|.+++|.+|..|||||+||+|+|.+....    ....
T Consensus       159 ~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~  238 (356)
T cd01365         159 KKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTE  238 (356)
T ss_pred             ccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCce
Confidence                            78999999999999999999999999999999999999999999999999987655    3457


Q ss_pred             ccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccC--------Ccccccccchhhhhhhh------
Q psy5718         178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEE--------FTVARLYISKMKSEVKN------  241 (720)
Q Consensus       178 ~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~--------~~hIPYRdSKLTrLLqd------  241 (720)
                      ..|+|+|||||||||..+++..|.+++|+.+||+||++|++|  +|+.+        ..||||||||||+||+|      
T Consensus       239 ~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s  318 (356)
T cd01365         239 KVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNS  318 (356)
T ss_pred             EEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCc
Confidence            789999999999999999999999999999999999999999  77653        38999999999999999      


Q ss_pred             --hhhccccCCcccHHHHHhHHHHHHHhccccccchhh
Q psy5718         242 --LVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTN  277 (720)
Q Consensus       242 --~mI~~iSPs~~~~~ETlsTL~fa~rak~Ikn~~~vN  277 (720)
                        +||+||||+..+++||++||+||+|+++|+|.|++|
T Consensus       319 ~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~  356 (356)
T cd01365         319 KTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN  356 (356)
T ss_pred             eEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence              899999999999999999999999999999999876

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

Probab=100.00  E-value=6.6e-53  Score=459.77  Aligned_cols=265  Identities=32%  Similarity=0.379  Sum_probs=235.1

Q ss_pred             CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee------CCeeeecceecCCCCChHHHHHHhhhhcceeeecC
Q psy5718          14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL------GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD   87 (720)
Q Consensus        14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~------~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G   87 (720)
                      +++|+|+|||||+.+.|..+++..++.++++.....+..      ..+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus         1 ~~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G   80 (352)
T cd01364           1 ESNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG   80 (352)
T ss_pred             CCCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence            368999999999999998888888888887653333322      35789999999999999999999999999999998


Q ss_pred             ---------------------C-----------CCceeehhhhhhhhhhhhhhcccccceeE------------------
Q psy5718          88 ---------------------A-----------DQYMVSVDRLRSDHQLKASTMCEHSLMHL------------------  117 (720)
Q Consensus        88 ---------------------~-----------~~~~GIIpRav~~LF~~i~~~~~~~~~~v------------------  117 (720)
                                           +           +..+|||||++.+||..+......+.+.+                  
T Consensus        81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~  160 (352)
T cd01364          81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSES  160 (352)
T ss_pred             CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCcc
Confidence                                 1           34589999999999998876422221111                  


Q ss_pred             -----------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC---ccc
Q psy5718         118 -----------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN---EKK  177 (720)
Q Consensus       118 -----------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~---~~~  177 (720)
                                       ++|+|++++.|.|++++..+|..|.++|.+++|.+|..|||||+||+|+|.+.....   ...
T Consensus       161 ~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~  240 (352)
T cd01364         161 DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELV  240 (352)
T ss_pred             ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccE
Confidence                             689999999999999999999999999999999999999999999999999876542   345


Q ss_pred             ccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccc
Q psy5718         178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCT  247 (720)
Q Consensus       178 ~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~i  247 (720)
                      ..|+|+||||||||+..+.++.+.+++|+++||+||++|++|  +|+.+..|||||+|+||+||+|        +||+||
T Consensus       241 ~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~v  320 (352)
T cd01364         241 KIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIATI  320 (352)
T ss_pred             EEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence            679999999999999999999999999999999999999999  9999999999999999999999        899999


Q ss_pred             cCCcccHHHHHhHHHHHHHhccccccchhhh
Q psy5718         248 SMESSQAEEHKKAIEYEKELGETRLLLQTNE  278 (720)
Q Consensus       248 SPs~~~~~ETlsTL~fa~rak~Ikn~~~vN~  278 (720)
                      ||+..+++||++||+||+||++|+|.|.+|.
T Consensus       321 sp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~  351 (352)
T cd01364         321 SPASINLEETLSTLEYAHRAKNIKNKPEVNQ  351 (352)
T ss_pred             CCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence            9999999999999999999999999999985

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup

Probab=100.00  E-value=7.4e-53  Score=458.11  Aligned_cols=251  Identities=29%  Similarity=0.323  Sum_probs=220.9

Q ss_pred             CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-----------------CCeeeecceecCCCCChHHHHHHhh
Q psy5718          15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-----------------GGKFYLFDKVFKPNATQEKVYDEAA   77 (720)
Q Consensus        15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-----------------~~k~F~FD~VF~~~asQeeVY~~~~   77 (720)
                      .+|+|||||||+++.|...+...++.+.++.   ++.+                 ..+.|.||+||+++++|++||+.++
T Consensus         1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~   77 (345)
T cd01368           1 DPVKVYLRVRPLSKDELESEDEGCIEVINST---TIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTA   77 (345)
T ss_pred             CCEEEEEEeCcCCchhhccCCCceEEEcCCC---EEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHH
Confidence            4799999999999998877777777776654   3322                 2468999999999999999999999


Q ss_pred             hhcceeeecC---------------------CCCceeehhhhhhhhhhhhhhccccc-----------------------
Q psy5718          78 KSIVSVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMCEHS-----------------------  113 (720)
Q Consensus        78 ~plV~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~~~~-----------------------  113 (720)
                      .|+|+++++|                     ++..+|||||++++||..+....-..                       
T Consensus        78 ~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~~~v~~S~~EIyne~v~DLL~~~~~~~~~  157 (345)
T cd01368          78 LPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGGYSVFVSYVEIYNNYIYDLLEDSPSSTKK  157 (345)
T ss_pred             HHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHheeEEEEEEEEeCCEeEeCCCCccccccC
Confidence            9999999998                     56889999999999999764411000                       


Q ss_pred             --ceeE-------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC--------cc
Q psy5718         114 --LMHL-------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN--------EK  176 (720)
Q Consensus       114 --~~~v-------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~--------~~  176 (720)
                        ...+       ++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|+|.+.+...        ..
T Consensus       158 ~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~  237 (345)
T cd01368         158 RQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQ  237 (345)
T ss_pred             CCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCc
Confidence              1111       799999999999999999999999999999999999999999999999999866532        45


Q ss_pred             cccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--cccc------CCcccccccchhhhhhhh-------
Q psy5718         177 KLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEE------EFTVARLYISKMKSEVKN-------  241 (720)
Q Consensus       177 ~~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~------~~~hIPYRdSKLTrLLqd-------  241 (720)
                      ...|+|+|||||||||..++++.|.+++|+.+||+||++|++|  +|.+      +..||||||||||+||+|       
T Consensus       238 ~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~  317 (345)
T cd01368         238 ITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGK  317 (345)
T ss_pred             eEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCe
Confidence            6789999999999999999999999999999999999999999  8876      348999999999999999       


Q ss_pred             -hhhccccCCcccHHHHHhHHHHHHHhc
Q psy5718         242 -LVARCTSMESSQAEEHKKAIEYEKELG  268 (720)
Q Consensus       242 -~mI~~iSPs~~~~~ETlsTL~fa~rak  268 (720)
                       +||+||||+..+++||++||+||.+|+
T Consensus       318 t~~I~~vsp~~~~~~eTl~tL~fa~~a~  345 (345)
T cd01368         318 ARMIVNVNPCASDYDETLHVMKFSAIAQ  345 (345)
T ss_pred             EEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence             999999999999999999999999985

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group

Probab=100.00  E-value=3.1e-52  Score=449.34  Aligned_cols=250  Identities=27%  Similarity=0.325  Sum_probs=222.3

Q ss_pred             CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-----------CCeeeecceecCCCCChHHHHHHhhhhccee
Q psy5718          15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-----------GGKFYLFDKVFKPNATQEKVYDEAAKSIVSV   83 (720)
Q Consensus        15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-----------~~k~F~FD~VF~~~asQeeVY~~~~~plV~~   83 (720)
                      .+|+|+|||||+++.|...+...++.+++++ ...+..           ..+.|.||+||+++++|++||+.++.|+|+.
T Consensus         1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~   79 (322)
T cd01367           1 MKITVAVRKRPLNDKELSKGETDVVSCESNP-TVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPH   79 (322)
T ss_pred             CCeEEEEEcCcCChhhhccCCceEEEECCCC-EEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHH
Confidence            4799999999999999877777788877763 112211           1478999999999999999999999999999


Q ss_pred             eecC---------------------CCCceeehhhhhhhhhhhhhhcccccceeE-------------------------
Q psy5718          84 QFVD---------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL-------------------------  117 (720)
Q Consensus        84 vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v-------------------------  117 (720)
                      +++|                     +...+|||||++++||..+......+.+.+                         
T Consensus        80 ~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~l~i~~~  159 (322)
T cd01367          80 VFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLNDRKRLSVLED  159 (322)
T ss_pred             HhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccCccceeEEEc
Confidence            9999                     557889999999999999876442222222                         


Q ss_pred             ----EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCccc
Q psy5718         118 ----IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKV  193 (720)
Q Consensus       118 ----~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr~  193 (720)
                          ++|+|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+.   ....|+|+|||||||||.
T Consensus       160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~vDLAGsE~~  236 (322)
T cd01367         160 GKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFIDLAGSERG  236 (322)
T ss_pred             CCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEeecCCcccc
Confidence                7999999999999999999999999999999999999999999999999998765   556899999999999999


Q ss_pred             ccCC-CcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHH
Q psy5718         194 SKTG-AEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIE  262 (720)
Q Consensus       194 ~kt~-~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~  262 (720)
                      .+++ ..+.++.|+++||+||++|++|  +|+.+..||||||||||++|+|        +||+||||+..+++||++||+
T Consensus       237 ~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~  316 (322)
T cd01367         237 ADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLR  316 (322)
T ss_pred             ccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHH
Confidence            8876 4688999999999999999999  9999999999999999999999        899999999999999999999


Q ss_pred             HHHHhc
Q psy5718         263 YEKELG  268 (720)
Q Consensus       263 fa~rak  268 (720)
                      ||+|+|
T Consensus       317 fa~r~k  322 (322)
T cd01367         317 YADRVK  322 (322)
T ss_pred             HHHhhC
Confidence            999986

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins

Probab=100.00  E-value=5.1e-52  Score=449.66  Aligned_cols=255  Identities=30%  Similarity=0.377  Sum_probs=227.7

Q ss_pred             CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------CCeeeecceecCCCCChHHHHHHhhhhcceeeecC
Q psy5718          15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD   87 (720)
Q Consensus        15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G   87 (720)
                      ++|+|+|||||+++.|...++..++.++++.....+..       ..+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus         1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G   80 (333)
T cd01371           1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG   80 (333)
T ss_pred             CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence            47999999999999998888888888876664333332       24789999999999999999999999999999999


Q ss_pred             ---------------------C---CCceeehhhhhhhhhhhhhhcccccceeE--------------------------
Q psy5718          88 ---------------------A---DQYMVSVDRLRSDHQLKASTMCEHSLMHL--------------------------  117 (720)
Q Consensus        88 ---------------------~---~~~~GIIpRav~~LF~~i~~~~~~~~~~v--------------------------  117 (720)
                                           +   ...+|||||++++||..+..... ..|.+                          
T Consensus        81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i  159 (333)
T cd01371          81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQKKKLEL  159 (333)
T ss_pred             CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCCCCceeE
Confidence                                 2   23899999999999998866432 11211                          


Q ss_pred             -------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC---Ccccccceeeeeec
Q psy5718         118 -------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---NEKKLSGKLYLVDL  187 (720)
Q Consensus       118 -------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~---~~~~~~skL~lVDL  187 (720)
                             ++|+|++++.|.|++++..+|..|.++|.+++|.+|..|||||+||+|+|.+.+..   ......|+|+||||
T Consensus       160 ~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDL  239 (333)
T cd01371         160 KERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDL  239 (333)
T ss_pred             EEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEEC
Confidence                   78999999999999999999999999999999999999999999999999987764   34567899999999


Q ss_pred             cCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccccCCcccHHH
Q psy5718         188 AGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTSMESSQAEE  256 (720)
Q Consensus       188 AGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~E  256 (720)
                      |||||..++++.|.+++|+++||+||.+|++|  +|+.+. .|||||||+||++|+|        +||+||||+..+++|
T Consensus       240 AGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~e  319 (333)
T cd01371         240 AGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDE  319 (333)
T ss_pred             CCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHH
Confidence            99999999999999999999999999999999  999888 5999999999999999        899999999999999


Q ss_pred             HHhHHHHHHHhccc
Q psy5718         257 HKKAIEYEKELGET  270 (720)
Q Consensus       257 TlsTL~fa~rak~I  270 (720)
                      |++||+||+|||.|
T Consensus       320 Tl~TL~fa~r~r~I  333 (333)
T cd01371         320 TLSTLRYANRAKNI  333 (333)
T ss_pred             HHHHHHHHHHhhcC
Confidence            99999999999987

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily

Probab=100.00  E-value=6.1e-52  Score=450.25  Aligned_cols=255  Identities=32%  Similarity=0.454  Sum_probs=229.9

Q ss_pred             CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC-CeeeecceecCCCCChHHHHHHhhhhcceeeecC------
Q psy5718          15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG-GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD------   87 (720)
Q Consensus        15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~-~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G------   87 (720)
                      .+|+|+||+||+++.|...+...++.+.+.+  ..+.++ .+.|.||+||+++++|++||+.++.|+|+++|+|      
T Consensus         1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~--~~v~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~   78 (341)
T cd01372           1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPGE--PQVTVGTDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVL   78 (341)
T ss_pred             CCeEEEEECCCCCchhcccCCCeEEEEeCCC--CEEEecCCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcccee
Confidence            4799999999999999888888888887765  244444 7899999999999999999999999999999999      


Q ss_pred             ---------------C------CCceeehhhhhhhhhhhhhhcccccceeE-----------------------------
Q psy5718          88 ---------------A------DQYMVSVDRLRSDHQLKASTMCEHSLMHL-----------------------------  117 (720)
Q Consensus        88 ---------------~------~~~~GIIpRav~~LF~~i~~~~~~~~~~v-----------------------------  117 (720)
                                     +      ...+|||||++++||..+........|.+                             
T Consensus        79 ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~  158 (341)
T cd01372          79 AYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIR  158 (341)
T ss_pred             eecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEE
Confidence                           1      35799999999999999876544222222                             


Q ss_pred             ------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC----------Ccccccce
Q psy5718         118 ------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE----------NEKKLSGK  181 (720)
Q Consensus       118 ------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~----------~~~~~~sk  181 (720)
                            ++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+.+..          ......|+
T Consensus       159 e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~  238 (341)
T cd01372         159 EDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSK  238 (341)
T ss_pred             ECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEE
Confidence                  78999999999999999999999999999999999999999999999999998763          34567899


Q ss_pred             eeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC---cccccccchhhhhhhh--------hhhcccc
Q psy5718         182 LYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF---TVARLYISKMKSEVKN--------LVARCTS  248 (720)
Q Consensus       182 L~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~---~hIPYRdSKLTrLLqd--------~mI~~iS  248 (720)
                      |+||||||||+..++++.|.+++|+.+||+||++|++|  +|+.+.   .|||||+|+||+||+|        +||+|||
T Consensus       239 l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vs  318 (341)
T cd01372         239 FHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVS  318 (341)
T ss_pred             EEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence            99999999999999999999999999999999999999  998876   7999999999999999        8999999


Q ss_pred             CCcccHHHHHhHHHHHHHhcccc
Q psy5718         249 MESSQAEEHKKAIEYEKELGETR  271 (720)
Q Consensus       249 Ps~~~~~ETlsTL~fa~rak~Ik  271 (720)
                      |+..+++||++||+||+||++||
T Consensus       319 p~~~~~~eTl~tL~~a~~~~~ik  341 (341)
T cd01372         319 PADSNFEETLNTLKYANRARNIK  341 (341)
T ss_pred             CChhhHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999986

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,

>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

Probab=100.00  E-value=4.1e-51  Score=440.46  Aligned_cols=249  Identities=30%  Similarity=0.408  Sum_probs=224.5

Q ss_pred             CEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC----CeeeecceecCCCCChHHHHHHhhhhcceeeecC----
Q psy5718          16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG----GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD----   87 (720)
Q Consensus        16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~----~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G----   87 (720)
                      +|+|+||+||++..|.. +...++.++++.   ++.+.    ++.|.||+||+++++|++||+.++.|+|++++.|    
T Consensus         1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~---~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~   76 (321)
T cd01374           1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDN---TISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGT   76 (321)
T ss_pred             CeEEEEEcCcCCccccc-CCcceEEECCCC---EEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCcee
Confidence            59999999999998873 566788888774   44443    5899999999999999999999999999999999    


Q ss_pred             -----------------CCCceeehhhhhhhhhhhhhhcccccceeE--------------------------------E
Q psy5718          88 -----------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL--------------------------------I  118 (720)
Q Consensus        88 -----------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v--------------------------------~  118 (720)
                                       +...+|||||++++||..+..... ..|.+                                +
T Consensus        77 i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~  155 (321)
T cd01374          77 IFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPD-REFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGV  155 (321)
T ss_pred             EEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccC-ceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCE
Confidence                             457789999999999999865431 12211                                7


Q ss_pred             EecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC---cccccceeeeeeccCCccccc
Q psy5718         119 VFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN---EKKLSGKLYLVDLAGSEKVSK  195 (720)
Q Consensus       119 ~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~---~~~~~skL~lVDLAGSEr~~k  195 (720)
                      +++|++++.|.|++++..+|..|.++|++++|.+|.+|||||+||+|+|.+.+...   +....|+|+|||||||||..+
T Consensus       156 ~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~  235 (321)
T cd01374         156 VVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQ  235 (321)
T ss_pred             EeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCcccc
Confidence            89999999999999999999999999999999999999999999999999987665   567789999999999999999


Q ss_pred             CCCcccchHHhhhhccCCccccCc--ccccCC--cccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHHH
Q psy5718         196 TGAEGTVLDEAKNINKSLSADGAG--KLEEEF--TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIEY  263 (720)
Q Consensus       196 t~~~g~rl~E~~~INkSL~aLg~V--aL~~~~--~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~f  263 (720)
                      .+ .+.+++|+++||+||++|++|  +|+.+.  .|||||||+||+||+|        +||+||||...+++||++||+|
T Consensus       236 ~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~  314 (321)
T cd01374         236 TG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKF  314 (321)
T ss_pred             CC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHH
Confidence            98 899999999999999999999  999985  9999999999999999        8999999999999999999999


Q ss_pred             HHHhccc
Q psy5718         264 EKELGET  270 (720)
Q Consensus       264 a~rak~I  270 (720)
                      |+||++|
T Consensus       315 a~r~~~i  321 (321)
T cd01374         315 ASRAKKV  321 (321)
T ss_pred             HHHHhcC
Confidence            9999986

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup

Probab=100.00  E-value=5.4e-51  Score=439.20  Aligned_cols=249  Identities=27%  Similarity=0.336  Sum_probs=217.9

Q ss_pred             CEEEEEeeCCCCchhhccCCceEEEecCCCc--cceeee-------CCeeeecceecCCCCChHHHHHHhhhhcceeeec
Q psy5718          16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE--ENGLSL-------GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFV   86 (720)
Q Consensus        16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~--~~~v~~-------~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~   86 (720)
                      +|+|+|||||+.+.|.  +...++.+.+.+.  ...+.+       ..+.|.||+||+++++|++||+.++.|+|+.+++
T Consensus         1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~   78 (319)
T cd01376           1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS   78 (319)
T ss_pred             CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence            6999999999998883  3445565543321  112222       2478999999999999999999999999999999


Q ss_pred             C---------------------CCCceeehhhhhhhhhhhhhhcccccceeE----------------------------
Q psy5718          87 D---------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL----------------------------  117 (720)
Q Consensus        87 G---------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v----------------------------  117 (720)
                      |                     +...+|||||++++||..+........+.+                            
T Consensus        79 G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~  158 (319)
T cd01376          79 GQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKD  158 (319)
T ss_pred             CCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCCCCCceEEEcCC
Confidence            9                     556899999999999998765432222222                            


Q ss_pred             --EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCccccc
Q psy5718         118 --IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSK  195 (720)
Q Consensus       118 --~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr~~k  195 (720)
                        ++|+|++++.|.|++++..++..|.++|.+++|.+|..|||||+||+|+|.+.+..  ....|+|+||||||||+..+
T Consensus       159 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~--~~~~s~l~~VDLAGsE~~~~  236 (319)
T cd01376         159 GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN--IQLEGKLNLIDLAGSEDNRR  236 (319)
T ss_pred             CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC--ceEEEEEEEEECCCCCcccc
Confidence              78999999999999999999999999999999999999999999999999987543  36789999999999999999


Q ss_pred             CCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHHHHH
Q psy5718         196 TGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIEYEK  265 (720)
Q Consensus       196 t~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~fa~  265 (720)
                      +++.|.+++|+++||+||++|++|  +|+.+..|||||||+||+||+|        +||+||||+..+++||++||+||+
T Consensus       237 ~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~  316 (319)
T cd01376         237 TGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFAS  316 (319)
T ss_pred             cCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHH
Confidence            999999999999999999999999  9999989999999999999999        899999999999999999999999


Q ss_pred             Hhc
Q psy5718         266 ELG  268 (720)
Q Consensus       266 rak  268 (720)
                      |||
T Consensus       317 r~~  319 (319)
T cd01376         317 RSK  319 (319)
T ss_pred             hhC
Confidence            986

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through

>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

Probab=100.00  E-value=2.4e-50  Score=435.68  Aligned_cols=257  Identities=34%  Similarity=0.451  Sum_probs=229.5

Q ss_pred             CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-C----CeeeecceecCCCCChHHHHHHhhhhcceeeecC-
Q psy5718          14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-G----GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD-   87 (720)
Q Consensus        14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-~----~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G-   87 (720)
                      +|+|+|+|||||+.+.|. .....++.+++++.. ++.+ +    .+.|.||+||+++++|++||+.+ .|+|+++++| 
T Consensus         1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~-~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v-~p~v~~~~~G~   77 (329)
T cd01366           1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGG-TIELSKGTGKKKSFSFDRVFDPDASQEDVFEEV-SPLVQSALDGY   77 (329)
T ss_pred             CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCce-EEEEeCCCCCceEEecCEEECCCCCHHHHHHHH-HHHHHHHhCCC
Confidence            478999999999998875 345567777776422 3333 2    37899999999999999999985 8999999998 


Q ss_pred             --------------------CCCceeehhhhhhhhhhhhhhccc-ccceeE-----------------------------
Q psy5718          88 --------------------ADQYMVSVDRLRSDHQLKASTMCE-HSLMHL-----------------------------  117 (720)
Q Consensus        88 --------------------~~~~~GIIpRav~~LF~~i~~~~~-~~~~~v-----------------------------  117 (720)
                                          +...+|||||++++||..+..... ...|.+                             
T Consensus        78 ~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~  157 (329)
T cd01366          78 NVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIK  157 (329)
T ss_pred             ceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEE
Confidence                                457799999999999998876543 222222                             


Q ss_pred             ------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCc
Q psy5718         118 ------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSE  191 (720)
Q Consensus       118 ------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSE  191 (720)
                            ++++|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+.+..++....|+|+||||||||
T Consensus       158 ~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGsE  237 (329)
T cd01366         158 HDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSE  237 (329)
T ss_pred             ECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCCc
Confidence                  68999999999999999999999999999999999999999999999999998888788889999999999999


Q ss_pred             ccccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHHhHH
Q psy5718         192 KVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAI  261 (720)
Q Consensus       192 r~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL  261 (720)
                      +..+.++.+.+++|+.+||+||++|++|  +|+.+..|||||+|+||++|+|        +||+||||...+++||++||
T Consensus       238 ~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL  317 (329)
T cd01366         238 RLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSL  317 (329)
T ss_pred             ccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHH
Confidence            9999999999999999999999999999  9999999999999999999999        89999999999999999999


Q ss_pred             HHHHHhcccccc
Q psy5718         262 EYEKELGETRLL  273 (720)
Q Consensus       262 ~fa~rak~Ikn~  273 (720)
                      +||+|+++|++.
T Consensus       318 ~~a~~~~~i~~~  329 (329)
T cd01366         318 RFASRVRSVELG  329 (329)
T ss_pred             HHHHHhhcccCC
Confidence            999999999873

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi

>KOG0239|consensus

Probab=100.00  E-value=3.6e-50  Score=463.74  Aligned_cols=262  Identities=31%  Similarity=0.356  Sum_probs=233.8

Q ss_pred             CCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC-------CeeeecceecCCCCChHHHHHHhhhhcceeee
Q psy5718          13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG-------GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQF   85 (720)
Q Consensus        13 ~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~-------~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl   85 (720)
                      .+|+|||||||||+.+.+.......++.++... ...+...       .+.|.||+||+|.++|++||..+ .|+|.++|
T Consensus       312 LkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~-~~lv~S~l  389 (670)
T KOG0239|consen  312 LKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQG-EVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEV-SPLVQSAL  389 (670)
T ss_pred             hhcCceEEEEecCCCccccccccccccccCCcc-eeEeecCCCCCCCccccceeeeecCCcccHHHHHHHH-HHHHHHHh
Confidence            479999999999999998765444444444331 1122211       13599999999999999999997 89999999


Q ss_pred             cC--------------------C--CCceeehhhhhhhhhhhhhhcccccceeE--------------------------
Q psy5718          86 VD--------------------A--DQYMVSVDRLRSDHQLKASTMCEHSLMHL--------------------------  117 (720)
Q Consensus        86 ~G--------------------~--~~~~GIIpRav~~LF~~i~~~~~~~~~~v--------------------------  117 (720)
                      +|                    +  +..+|||||++.+||..+......|.|.+                          
T Consensus       390 DGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~  469 (670)
T KOG0239|consen  390 DGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLE  469 (670)
T ss_pred             cCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhcccccccccee
Confidence            99                    2  46999999999999999988776666655                          


Q ss_pred             --------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccC
Q psy5718         118 --------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG  189 (720)
Q Consensus       118 --------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAG  189 (720)
                              .+|+|++.+.|.+.+++..++..|.++|++++|.+|.+|||||+||+|+|...+..++....|.|+||||||
T Consensus       470 I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAG  549 (670)
T KOG0239|consen  470 IVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAG  549 (670)
T ss_pred             EEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeeccc
Confidence                    689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHHh
Q psy5718         190 SEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKK  259 (720)
Q Consensus       190 SEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETls  259 (720)
                      |||++++++.|.|++|+.+||+||++||+|  ||+....||||||||||++|||        +|+++|||...++.||++
T Consensus       550 SER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~  629 (670)
T KOG0239|consen  550 SERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLC  629 (670)
T ss_pred             CcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhh
Confidence            999999999999999999999999999999  9999999999999999999999        899999999999999999


Q ss_pred             HHHHHHHhccccccchh
Q psy5718         260 AIEYEKELGETRLLLQT  276 (720)
Q Consensus       260 TL~fa~rak~Ikn~~~v  276 (720)
                      +|+||.|++.+...+-.
T Consensus       630 sL~FA~rv~~~~lG~a~  646 (670)
T KOG0239|consen  630 SLRFATRVRSVELGSAR  646 (670)
T ss_pred             ccchHHHhhceeccccc
Confidence            99999999999876654

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

Probab=100.00  E-value=1.3e-49  Score=430.99  Aligned_cols=246  Identities=31%  Similarity=0.383  Sum_probs=211.6

Q ss_pred             CEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------------CCeeeecceecCCCCChHHHHHHhhhhcce
Q psy5718          16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------------GGKFYLFDKVFKPNATQEKVYDEAAKSIVS   82 (720)
Q Consensus        16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------------~~k~F~FD~VF~~~asQeeVY~~~~~plV~   82 (720)
                      +|+|+||+||+...+..     .+.+++++...++..             ..+.|.||+||++ ++|++||+.++.|+|+
T Consensus         1 ~i~V~vRvRP~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~   74 (334)
T cd01375           1 TIQVFVRVRPTPTKQGS-----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVD   74 (334)
T ss_pred             CeEEEEECCCCCCCCCc-----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHH
Confidence            59999999999874322     223333322211111             1368999999999 9999999999999999


Q ss_pred             eeecC------------------------CCCceeehhhhhhhhhhhhhhcccccceeE---------------------
Q psy5718          83 VQFVD------------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL---------------------  117 (720)
Q Consensus        83 ~vl~G------------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v---------------------  117 (720)
                      ++|+|                        ....+|||||++.+||..+..... ..|.+                     
T Consensus        75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~~  153 (334)
T cd01375          75 SALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRAT-KTYTVHVSYLEIYNEQLYDLLGDTPE  153 (334)
T ss_pred             HHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccC-cceEEEEEEEEEECCEeecCCCCCcc
Confidence            99999                        124789999999999998865321 11111                     


Q ss_pred             -----------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeee--cCCcccc
Q psy5718         118 -----------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQEN--LENEKKL  178 (720)
Q Consensus       118 -----------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~--~~~~~~~  178 (720)
                                       ++|+|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.+  .......
T Consensus       154 ~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~  233 (334)
T cd01375         154 ALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVR  233 (334)
T ss_pred             ccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceE
Confidence                             799999999999999999999999999999999999999999999999999874  3445677


Q ss_pred             cceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccc
Q psy5718         179 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCT  247 (720)
Q Consensus       179 ~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~i  247 (720)
                      .|+|+|||||||||..++++.+..++|+++||+||++|++|  +|+.+. .|||||||+||+||+|        +||+||
T Consensus       234 ~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~v  313 (334)
T cd01375         234 LSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATI  313 (334)
T ss_pred             EEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence            89999999999999999999999999999999999999999  999998 9999999999999999        899999


Q ss_pred             cCCcccHHHHHhHHHHHHHhc
Q psy5718         248 SMESSQAEEHKKAIEYEKELG  268 (720)
Q Consensus       248 SPs~~~~~ETlsTL~fa~rak  268 (720)
                      ||+..+++||++||+||+|++
T Consensus       314 sp~~~~~~eTl~TL~fa~r~~  334 (334)
T cd01375         314 WVEPSNLDETLSTLRFAQRVA  334 (334)
T ss_pred             CCchhhHHHHHHHHHHHHhcC
Confidence            999999999999999999985

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80

>smart00129 KISc Kinesin motor, catalytic domain

Probab=100.00  E-value=2.3e-49  Score=428.87  Aligned_cols=261  Identities=37%  Similarity=0.441  Sum_probs=235.1

Q ss_pred             CEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------CCeeeecceecCCCCChHHHHHHhhhhcceeeecC-
Q psy5718          16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD-   87 (720)
Q Consensus        16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G-   87 (720)
                      +|+|+|||||++..|...+...++.+++++.. .+.+       ..+.|.||+||+++++|++||+.++.|+|+.++.| 
T Consensus         1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~   79 (335)
T smart00129        1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGK-TLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGY   79 (335)
T ss_pred             CcEEEEEcCcCCccchhcCCceEEEEcCCCCC-EEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCC
Confidence            69999999999999988888888988777432 3332       24889999999999999999999999999999988 


Q ss_pred             --------------------CCCceeehhhhhhhhhhhhhhcccccceeE------------------------------
Q psy5718          88 --------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL------------------------------  117 (720)
Q Consensus        88 --------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v------------------------------  117 (720)
                                          +...+|||||++++||..+........+.+                              
T Consensus        80 ~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~  159 (335)
T smart00129       80 NATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKK  159 (335)
T ss_pred             ceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCC
Confidence                                557789999999999999876543333322                              


Q ss_pred             --EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEee--ecCCcccccceeeeeeccCCccc
Q psy5718         118 --IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQE--NLENEKKLSGKLYLVDLAGSEKV  193 (720)
Q Consensus       118 --~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~--~~~~~~~~~skL~lVDLAGSEr~  193 (720)
                        ++++|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+.  +........|+|+||||||||+.
T Consensus       160 ~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~  239 (335)
T smart00129      160 GGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERA  239 (335)
T ss_pred             CCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCcc
Confidence              79999999999999999999999999999999999999999999999999976  55556788899999999999999


Q ss_pred             ccCCCcccchHHhhhhccCCccccCc--ccccC--Ccccccccchhhhhhhh--------hhhccccCCcccHHHHHhHH
Q psy5718         194 SKTGAEGTVLDEAKNINKSLSADGAG--KLEEE--FTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAI  261 (720)
Q Consensus       194 ~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~--~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL  261 (720)
                      .+.++.|.+++|+..||+||.+|++|  +|+++  ..|||||+|+||++|++        +||+||||...+++||++||
T Consensus       240 ~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL  319 (335)
T smart00129      240 SKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTL  319 (335)
T ss_pred             ccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHH
Confidence            99999999999999999999999999  88885  48999999999999999        89999999999999999999


Q ss_pred             HHHHHhccccccchhh
Q psy5718         262 EYEKELGETRLLLQTN  277 (720)
Q Consensus       262 ~fa~rak~Ikn~~~vN  277 (720)
                      +||+++++|+|.|++|
T Consensus       320 ~~a~~~~~i~~~p~~~  335 (335)
T smart00129      320 RFASRAKEIKNKAIVN  335 (335)
T ss_pred             HHHHHHhhcccCCCcC
Confidence            9999999999999875

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.

>KOG0247|consensus

Probab=100.00  E-value=8.3e-48  Score=430.04  Aligned_cols=265  Identities=27%  Similarity=0.340  Sum_probs=228.3

Q ss_pred             CcCCCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC----------------CeeeecceecCCCCChHH
Q psy5718           8 DREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG----------------GKFYLFDKVFKPNATQEK   71 (720)
Q Consensus         8 ~~~~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~----------------~k~F~FD~VF~~~asQee   71 (720)
                      +.+.....+|.||||+||+.+.   .++..|+.+.++.   ++.+.                .+.|.|.+||+|+++|.+
T Consensus        24 ~~S~~~~d~v~v~~rvrP~~~~---~~~~g~l~v~n~~---tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~d   97 (809)
T KOG0247|consen   24 GASCESKDPVLVVCRVRPLSDA---SEDEGCLRVINEE---TIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQAD   97 (809)
T ss_pred             ccchhhhcchheeEeecCCCCC---ccccceEEEeccc---eeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHH
Confidence            4445667899999999999863   2344455555554   22221                268999999999999999


Q ss_pred             HHHHhhhhcceeeecC---------------------CCCceeehhhhhhhhhhhhhhccc-ccc---------------
Q psy5718          72 VYDEAAKSIVSVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMCE-HSL---------------  114 (720)
Q Consensus        72 VY~~~~~plV~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~~-~~~---------------  114 (720)
                      ||+.++.|+|.+++.|                     ++..+||+||++.-||..|..... ...               
T Consensus        98 vF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~  177 (809)
T KOG0247|consen   98 VFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEE  177 (809)
T ss_pred             HHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHH
Confidence            9999999999998887                     677889999999999998865210 000               


Q ss_pred             ------------------------------------------------eeE-----------------------------
Q psy5718         115 ------------------------------------------------MHL-----------------------------  117 (720)
Q Consensus       115 ------------------------------------------------~~v-----------------------------  117 (720)
                                                                      |.|                             
T Consensus       178 ~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~  257 (809)
T KOG0247|consen  178 DALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLK  257 (809)
T ss_pred             HHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhh
Confidence                                                            000                             


Q ss_pred             ---------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC--Ccccccceeeeee
Q psy5718         118 ---------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE--NEKKLSGKLYLVD  186 (720)
Q Consensus       118 ---------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~--~~~~~~skL~lVD  186 (720)
                               +||+|+++|+|.|.+|++.+|..|.++|++++|..|..|||||+||+|.|-+....  ...+..|.|.|||
T Consensus       258 ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvD  337 (809)
T KOG0247|consen  258 LLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVD  337 (809)
T ss_pred             hhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeee
Confidence                     89999999999999999999999999999999999999999999999999987766  5678889999999


Q ss_pred             ccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC-----cccccccchhhhhhhh--------hhhccccCCc
Q psy5718         187 LAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-----TVARLYISKMKSEVKN--------LVARCTSMES  251 (720)
Q Consensus       187 LAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-----~hIPYRdSKLTrLLqd--------~mI~~iSPs~  251 (720)
                      ||||||..+++++|.|++||.+||.||++||+|  +|....     .+|||||||||++++.        .||+||+|..
T Consensus       338 LAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~  417 (809)
T KOG0247|consen  338 LAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKA  417 (809)
T ss_pred             cccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCch
Confidence            999999999999999999999999999999999  776543     8999999999999999        9999999999


Q ss_pred             ccHHHHHhHHHHHHHhccccccchhhh
Q psy5718         252 SQAEEHKKAIEYEKELGETRLLLQTNE  278 (720)
Q Consensus       252 ~~~~ETlsTL~fa~rak~Ikn~~~vN~  278 (720)
                      .+|+|+++.|+||.-|..|.+.+.++.
T Consensus       418 e~YdEnl~vlkFaeiaq~v~v~~~~~~  444 (809)
T KOG0247|consen  418 EDYDENLNVLKFAEIAQEVEVARPVIK  444 (809)
T ss_pred             hhHHHHHHHHHHHHhcccccccCcccc
Confidence            999999999999999999988777655

>KOG0244|consensus

Probab=100.00  E-value=2.2e-49  Score=454.11  Aligned_cols=276  Identities=29%  Similarity=0.385  Sum_probs=247.2

Q ss_pred             eCCCCchhhccCCceEEEecCCCccceeeeC-CeeeecceecCCCCChHHHHHHhhhhcceeeecC--------------
Q psy5718          23 FRPLNHSEEKAGSKFIVKFPSGGEENGLSLG-GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD--------------   87 (720)
Q Consensus        23 VRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~-~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G--------------   87 (720)
                      |||+...|...|+..|+.+.+..  ..|.++ ..+|+||+||....+|.++|+.++.|+++.+|.|              
T Consensus         1 vRpl~~~e~~~g~~~c~~~~~~~--pqv~ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsg   78 (913)
T KOG0244|consen    1 VRPLKQMEEEQGCRRCTEVSPRT--PQVAIGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSG   78 (913)
T ss_pred             CCCccchHHHhcchhhcccCCCC--CceeecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCC
Confidence            69999999999999999855544  245554 6899999999999999999999999999999999              


Q ss_pred             -----------CCCceeehhhhhhhhhhhhhhcccccceeE---------------------------------EEecCc
Q psy5718          88 -----------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL---------------------------------IVFPGA  123 (720)
Q Consensus        88 -----------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v---------------------------------~~V~gl  123 (720)
                                 .....|+|||+++.+|.+++.... ..|.+                                 +.+.|+
T Consensus        79 kTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e~~g~it~~gl  157 (913)
T KOG0244|consen   79 KTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKLREPKGEITIRGL  157 (913)
T ss_pred             ceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceeccccCCceEEEee
Confidence                       122359999999999999987543 22222                                 678899


Q ss_pred             EEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEee-ecCCcccccceeeeeeccCCcccccCCCcccc
Q psy5718         124 TERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQE-NLENEKKLSGKLYLVDLAGSEKVSKTGAEGTV  202 (720)
Q Consensus       124 tev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~-~~~~~~~~~skL~lVDLAGSEr~~kt~~~g~r  202 (720)
                      |+..|.+..++...+..|.-.|++++|+||..|||||+||||.+++. ........++||+|||||||||.+++++.|.+
T Consensus       158 te~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a~gdr  237 (913)
T KOG0244|consen  158 TEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKAEGDR  237 (913)
T ss_pred             hHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccccccchhh
Confidence            99999999999999999999999999999999999999999999984 44455678899999999999999999999999


Q ss_pred             hHHhhhhccCCccccCc--ccccCC--cccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHHHHHHhccc
Q psy5718         203 LDEAKNINKSLSADGAG--KLEEEF--TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIEYEKELGET  270 (720)
Q Consensus       203 l~E~~~INkSL~aLg~V--aL~~~~--~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~fa~rak~I  270 (720)
                      ++||++||.+|++||+|  ||+...  .|||||||+|||||||        +||+||||+.+|.+||++||+||.||+.|
T Consensus       238 lKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~i  317 (913)
T KOG0244|consen  238 LKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQI  317 (913)
T ss_pred             hhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHh
Confidence            99999999999999999  998877  5999999999999999        99999999999999999999999999999


Q ss_pred             cccchhhhHH-HHHHHHHHHHHHHHHHHHHHH
Q psy5718         271 RLLLQTNERR-EQARKDLKGLEDTVTKELQTL  301 (720)
Q Consensus       271 kn~~~vN~~~-~~~~~~Lk~ei~~Lk~EL~~l  301 (720)
                      +|+|.+|.++ ..++..|+.+|+.|+.+|...
T Consensus       318 knk~vvN~d~~~~~~~~lK~ql~~l~~ell~~  349 (913)
T KOG0244|consen  318 KNKPVVNQDPKSFEMLKLKAQLEPLQVELLSK  349 (913)
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999944 566699999999999998776

>cd00106 KISc Kinesin motor domain

Probab=100.00  E-value=3.6e-47  Score=410.35  Aligned_cols=249  Identities=37%  Similarity=0.453  Sum_probs=223.0

Q ss_pred             CEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC---------CeeeecceecCCCCChHHHHHHhhhhcceeeec
Q psy5718          16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG---------GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFV   86 (720)
Q Consensus        16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~---------~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~   86 (720)
                      +|+|+||+||+...| ..+...++.+++++   .+.+.         .+.|.||+||+++++|++||+.++.|+|++++.
T Consensus         1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~   76 (328)
T cd00106           1 NIRVVVRIRPLNGRE-SKSEESCITVDDNK---TVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLE   76 (328)
T ss_pred             CeEEEEEcCCCCccc-ccCCCcEEEECCCC---EEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhC
Confidence            699999999998876 33566778888764   33332         389999999999999999999999999999999


Q ss_pred             C---------------------CCCceeehhhhhhhhhhhhhhccc-ccceeE---------------------------
Q psy5718          87 D---------------------ADQYMVSVDRLRSDHQLKASTMCE-HSLMHL---------------------------  117 (720)
Q Consensus        87 G---------------------~~~~~GIIpRav~~LF~~i~~~~~-~~~~~v---------------------------  117 (720)
                      |                     +...+|||||++++||..+..... ...+.+                           
T Consensus        77 G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i  156 (328)
T cd00106          77 GYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSL  156 (328)
T ss_pred             CCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEE
Confidence            8                     456799999999999999876532 111111                           


Q ss_pred             -------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcc--cccceeeeeecc
Q psy5718         118 -------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEK--KLSGKLYLVDLA  188 (720)
Q Consensus       118 -------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~--~~~skL~lVDLA  188 (720)
                             ++++|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+.+.....  ...|+|+|||||
T Consensus       157 ~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLa  236 (328)
T cd00106         157 REDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLA  236 (328)
T ss_pred             EEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECC
Confidence                   68999999999999999999999999999999999999999999999999998877654  788999999999


Q ss_pred             CCcccccCCCcccchHHhhhhccCCccccCc--ccccCC--cccccccchhhhhhhh--------hhhccccCCcccHHH
Q psy5718         189 GSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF--TVARLYISKMKSEVKN--------LVARCTSMESSQAEE  256 (720)
Q Consensus       189 GSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~--~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~E  256 (720)
                      |||+..+.+..+.++.|++.||+||.+|++|  +|+.+.  .|||||+|+||+||+|        +||+||||...+++|
T Consensus       237 Gse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~e  316 (328)
T cd00106         237 GSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDE  316 (328)
T ss_pred             CCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHH
Confidence            9999999999999999999999999999999  999888  9999999999999999        899999999999999


Q ss_pred             HHhHHHHHHHhc
Q psy5718         257 HKKAIEYEKELG  268 (720)
Q Consensus       257 TlsTL~fa~rak  268 (720)
                      |++||+||+|||
T Consensus       317 Tl~tL~~a~r~~  328 (328)
T cd00106         317 TLSTLRFASRAK  328 (328)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999986

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil

>KOG0246|consensus

Probab=100.00  E-value=2.4e-46  Score=408.36  Aligned_cols=260  Identities=28%  Similarity=0.297  Sum_probs=226.0

Q ss_pred             cCCCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------------CCeeeecceecCCCCChHHHHHH
Q psy5718           9 REIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------------GGKFYLFDKVFKPNATQEKVYDE   75 (720)
Q Consensus         9 ~~~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------------~~k~F~FD~VF~~~asQeeVY~~   75 (720)
                      .....+..|.|+||-||++..|.......++.+|..+   .+.+             .++.|.||++|+..++++.||..
T Consensus       202 ~~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~---~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrf  278 (676)
T KOG0246|consen  202 GDGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKN---VLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRF  278 (676)
T ss_pred             CCCCccceEEEEeecCCCCchhccccccceEeccccc---eEEeeccccccchHHHHhhceEEEeeecccccchHHHHHH
Confidence            3456678999999999999999877777788887776   3332             25799999999999999999999


Q ss_pred             hhhhcceeeecC---------------------------CCCceeehhhhhhhhhhhhhhcc-cccce-------eE---
Q psy5718          76 AAKSIVSVQFVD---------------------------ADQYMVSVDRLRSDHQLKASTMC-EHSLM-------HL---  117 (720)
Q Consensus        76 ~~~plV~~vl~G---------------------------~~~~~GIIpRav~~LF~~i~~~~-~~~~~-------~v---  117 (720)
                      +++|+|..+|+|                           .+...||+-.+..|+|..+.... ....+       .|   
T Consensus       279 Ta~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgG  358 (676)
T KOG0246|consen  279 TAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGG  358 (676)
T ss_pred             hhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCc
Confidence            999999999998                           23455999999999999876521 11111       11   


Q ss_pred             ---------------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcc
Q psy5718         118 ---------------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEK  176 (720)
Q Consensus       118 ---------------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~  176 (720)
                                           +.|.||++..|.+.++++.+|..|++-|+++.|..|+.|||||+||+|.+....   +.
T Consensus       359 KvfDLL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~  435 (676)
T KOG0246|consen  359 KVYDLLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EF  435 (676)
T ss_pred             chhhhhccccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---cc
Confidence                                 899999999999999999999999999999999999999999999999997632   35


Q ss_pred             cccceeeeeeccCCcccccCC-CcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh---------hhh
Q psy5718         177 KLSGKLYLVDLAGSEKVSKTG-AEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN---------LVA  244 (720)
Q Consensus       177 ~~~skL~lVDLAGSEr~~kt~-~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd---------~mI  244 (720)
                      ..+|++.||||||+||...+. ++.+...||+.||+||+||..|  ||+.++.|+|||.||||.+|+|         +||
T Consensus       436 k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMI  515 (676)
T KOG0246|consen  436 KLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMI  515 (676)
T ss_pred             eeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEE
Confidence            788999999999999977664 4567778999999999999999  9999999999999999999999         999


Q ss_pred             ccccCCcccHHHHHhHHHHHHHhccccccc
Q psy5718         245 RCTSMESSQAEEHKKAIEYEKELGETRLLL  274 (720)
Q Consensus       245 ~~iSPs~~~~~ETlsTL~fa~rak~Ikn~~  274 (720)
                      +||||...+++.||+||+||.|+|......
T Consensus       516 A~ISPg~~ScEhTLNTLRYAdRVKeLsv~~  545 (676)
T KOG0246|consen  516 ATISPGISSCEHTLNTLRYADRVKELSVDG  545 (676)
T ss_pred             EEeCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999876544

>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=100.00  E-value=1.2e-46  Score=407.40  Aligned_cols=249  Identities=32%  Similarity=0.431  Sum_probs=217.9

Q ss_pred             eeCCCCchhhccCCceEEEecCCCccceee-------eCCeeeecceecCCCCChHHHHHHhhhhcceeeecC-------
Q psy5718          22 RFRPLNHSEEKAGSKFIVKFPSGGEENGLS-------LGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD-------   87 (720)
Q Consensus        22 RVRPl~~~E~~~g~~~iv~~~~~~~~~~v~-------~~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G-------   87 (720)
                      ||||+++.|...+...++............       ...+.|.||+||+++++|++||+.++.|+|+++|+|       
T Consensus         1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a   80 (335)
T PF00225_consen    1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA   80 (335)
T ss_dssp             EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred             CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence            899999999988887777665321111111       124789999999999999999999999999999999       


Q ss_pred             --------------C--CCceeehhhhhhhhhhhhhhcccc--cceeE--------------------------------
Q psy5718          88 --------------A--DQYMVSVDRLRSDHQLKASTMCEH--SLMHL--------------------------------  117 (720)
Q Consensus        88 --------------~--~~~~GIIpRav~~LF~~i~~~~~~--~~~~v--------------------------------  117 (720)
                                    +  ...+|||||++.+||..+......  ..+.+                                
T Consensus        81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~  160 (335)
T PF00225_consen   81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED  160 (335)
T ss_dssp             EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred             eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence                          4  789999999999999999775432  22222                                


Q ss_pred             -----EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcc----cccceeeeeecc
Q psy5718         118 -----IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEK----KLSGKLYLVDLA  188 (720)
Q Consensus       118 -----~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~----~~~skL~lVDLA  188 (720)
                           ++|+|++++.|.|+++++.+|..|.++|.++.|.+|..|||||+||+|+|.+.+.....    ...|+|+|||||
T Consensus       161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa  240 (335)
T PF00225_consen  161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA  240 (335)
T ss_dssp             TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred             cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence                 68999999999999999999999999999999999999999999999999998877553    578999999999


Q ss_pred             CCcccccCCC-cccchHHhhhhccCCccccCc--ccccC--Ccccccccchhhhhhhh--------hhhccccCCcccHH
Q psy5718         189 GSEKVSKTGA-EGTVLDEAKNINKSLSADGAG--KLEEE--FTVARLYISKMKSEVKN--------LVARCTSMESSQAE  255 (720)
Q Consensus       189 GSEr~~kt~~-~g~rl~E~~~INkSL~aLg~V--aL~~~--~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~  255 (720)
                      |||+..+.++ .+.+++|++.||+||.+|++|  +|+.+  ..|||||+|+||+||+|        +||+||||...+++
T Consensus       241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~  320 (335)
T PF00225_consen  241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE  320 (335)
T ss_dssp             ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred             cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence            9999999886 478899999999999999999  99998  69999999999999999        89999999999999


Q ss_pred             HHHhHHHHHHHhccc
Q psy5718         256 EHKKAIEYEKELGET  270 (720)
Q Consensus       256 ETlsTL~fa~rak~I  270 (720)
                      ||++||+||.++++|
T Consensus       321 eTl~tL~fa~~~~~I  335 (335)
T PF00225_consen  321 ETLSTLRFASRAREI  335 (335)
T ss_dssp             HHHHHHHHHHHHTTE
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999999999986

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=100.00  E-value=9.5e-40  Score=374.75  Aligned_cols=280  Identities=28%  Similarity=0.348  Sum_probs=232.4

Q ss_pred             CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC-CeeeecceecCCCCChHHHHHHhhhhcceeeecC-----
Q psy5718          14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG-GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD-----   87 (720)
Q Consensus        14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~-~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G-----   87 (720)
                      -++++++++..|-...+      ... ...+......... ...|.||+||++.++|++||+.+++|+++.++.|     
T Consensus        21 ~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~Tv   93 (568)
T COG5059          21 VSDIKSTIRIIPGELGE------RLI-NTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTV   93 (568)
T ss_pred             ecCceEEEeecCCCcch------hee-ecccccccccccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceE
Confidence            35678888888854332      111 1222211111111 4679999999999999999999999999999998     


Q ss_pred             ----------------CCCceeehhhhhhhhhhhhhhcccccceeE--------------------------------EE
Q psy5718          88 ----------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL--------------------------------IV  119 (720)
Q Consensus        88 ----------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v--------------------------------~~  119 (720)
                                      ....+||||+++.+||..+........+.+                                ++
T Consensus        94 fayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~  173 (568)
T COG5059          94 FAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVK  173 (568)
T ss_pred             EEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCceE
Confidence                            457999999999999998766542222222                                89


Q ss_pred             ecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCcccccCCCc
Q psy5718         120 FPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAE  199 (720)
Q Consensus       120 V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr~~kt~~~  199 (720)
                      |.|+++..|.+.++++.+|..|..+|+++.|.+|..|||||+||++++.+.+...+....++|+||||||||+++.+++.
T Consensus       174 v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~  253 (568)
T COG5059         174 VAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNR  253 (568)
T ss_pred             eecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcc
Confidence            99999999999999999999999999999999999999999999999999988777777789999999999999999999


Q ss_pred             ccchHHhhhhccCCccccCc--cccc--CCcccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHHHHHHh
Q psy5718         200 GTVLDEAKNINKSLSADGAG--KLEE--EFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIEYEKEL  267 (720)
Q Consensus       200 g~rl~E~~~INkSL~aLg~V--aL~~--~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~fa~ra  267 (720)
                      +.++.||.+||+||.+||+|  +|..  +..|||||+|||||+||+        +|||||+|...++++|.+||+||.||
T Consensus       254 ~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~ra  333 (568)
T COG5059         254 GTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRA  333 (568)
T ss_pred             cchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHH
Confidence            99999999999999999999  9987  669999999999999999        89999999999999999999999999


Q ss_pred             ccccccchhhh--HHHHHHHHHHHHHHHHHHHHHH
Q psy5718         268 GETRLLLQTNE--RREQARKDLKGLEDTVTKELQT  300 (720)
Q Consensus       268 k~Ikn~~~vN~--~~~~~~~~Lk~ei~~Lk~EL~~  300 (720)
                      +.|+|.+..|.  .....+..++..+...+.....
T Consensus       334 k~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  368 (568)
T COG5059         334 KSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEI  368 (568)
T ss_pred             hhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhh
Confidence            99999999994  3334444444444444444333

>cd01363 Motor_domain Myosin and Kinesin motor domain

Probab=100.00  E-value=6.4e-34  Score=284.16  Aligned_cols=145  Identities=39%  Similarity=0.515  Sum_probs=134.6

Q ss_pred             HHHHhhhhcceeeecC---------------------CCCceeehhhhhhhhhhhhhhcccccceeEEEecCcEEEEecC
Q psy5718          72 VYDEAAKSIVSVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGK  130 (720)
Q Consensus        72 VY~~~~~plV~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v~~V~gltev~V~S  130 (720)
                      ||+.++ |+|+.+++|                     +...+||||+++++                             
T Consensus         8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~-----------------------------   57 (186)
T cd01363           8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD-----------------------------   57 (186)
T ss_pred             HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence            888888 888888888                     45678999999887                             


Q ss_pred             hhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC---cccccceeeeeeccCCcccccCCCcccchHHhh
Q psy5718         131 PEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN---EKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAK  207 (720)
Q Consensus       131 ~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~---~~~~~skL~lVDLAGSEr~~kt~~~g~rl~E~~  207 (720)
                         ++.++..|.++|.+++|.+|..|||||+||+|++.+.+...   .....|+|+||||||||++.++++.+.+++|++
T Consensus        58 ---~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~  134 (186)
T cd01363          58 ---VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETA  134 (186)
T ss_pred             ---HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHH
Confidence               78889999999999999999999999999999999987655   567789999999999999999999999999999


Q ss_pred             hhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccC
Q psy5718         208 NINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSM  249 (720)
Q Consensus       208 ~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSP  249 (720)
                      +||+||++|++|  +|+++..||||||||||+||+|        +||+||||
T Consensus       135 ~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP  186 (186)
T cd01363         135 NINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVACISP  186 (186)
T ss_pred             HHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence            999999999999  9999999999999999999999        89999999

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.55  E-value=0.076  Score=61.31  Aligned_cols=61  Identities=30%  Similarity=0.484  Sum_probs=30.4

Q ss_pred             hHHHHHhhhhHHHHHHHHHHHhhhhcccccchhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         336 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKE  413 (720)
Q Consensus       336 qki~~le~~Le~L~~~~~qLv~dn~~l~~elp~~~~~~~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~ee  413 (720)
                      .|..+++++++...+....|+..+..+..+.                 +.+.....+++.++....+..++|+++.++
T Consensus       136 ~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~-----------------~~l~~~v~~l~~eL~~~~ee~e~L~~~~ke  196 (546)
T PF07888_consen  136 TKAQLLQNQLEECQKEKEELLKENEQLEEEV-----------------EQLREEVERLEAELEQEEEEMEQLKQQQKE  196 (546)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567777666555555554444432221                 233333444555555555555555555533

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK02224 chromosome segregation protein; Provisional

Probab=97.52  E-value=0.25  Score=60.91  Aligned_cols=7  Identities=0%  Similarity=0.230  Sum_probs=3.5

Q ss_pred             hhhhhhh
Q psy5718         234 KMKSEVK  240 (720)
Q Consensus       234 KLTrLLq  240 (720)
                      .++++|.
T Consensus       139 e~~~~l~  145 (880)
T PRK02224        139 EVNKLIN  145 (880)
T ss_pred             ChHHHHc
Confidence            3555554

>KOG0161|consensus

Probab=97.47  E-value=0.18  Score=65.79  Aligned_cols=106  Identities=16%  Similarity=0.273  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy5718         396 EMTRLTQENESAKEEVKELITTARRD---YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFE  472 (720)
Q Consensus       396 Ei~~~~q~~ekLkeq~eell~~~~~~---~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~  472 (720)
                      +.+.+.....++.++++++.....+.   ..++.....++-.++..+.+.+.+....-++|.....-+.-++-....+++
T Consensus      1007 k~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e 1086 (1930)
T KOG0161|consen 1007 KAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLE 1086 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45555556666666663333332222   222223333444444444555554444444444444445555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5718         473 TLTEELTLKQTTLNTTSTELQQIKDMSNH  501 (720)
Q Consensus       473 ~l~~el~~~~~~~~~l~~el~~l~~~~~~  501 (720)
                      .....+++++..+..|++.+..|.+.-..
T Consensus      1087 ~e~~~~~~l~k~i~eL~~~i~el~e~le~ 1115 (1930)
T KOG0161|consen 1087 DEQAEVAQLQKQIKELEARIKELEEELEA 1115 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555544333

>PRK02224 chromosome segregation protein; Provisional

Probab=97.46  E-value=0.47  Score=58.59  Aligned_cols=6  Identities=0%  Similarity=0.285  Sum_probs=2.7

Q ss_pred             HHHHHh
Q psy5718          71 KVYDEA   76 (720)
Q Consensus        71 eVY~~~   76 (720)
                      .|++.+
T Consensus        38 til~ai   43 (880)
T PRK02224         38 SLLEAC   43 (880)
T ss_pred             HHHHHH
Confidence            444443

>KOG0161|consensus

Probab=97.34  E-value=0.58  Score=61.45  Aligned_cols=81  Identities=20%  Similarity=0.309  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy5718         399 RLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEEL  478 (720)
Q Consensus       399 ~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el  478 (720)
                      +..+..++.+..++-.+.........+......++..+.....++-.+...+++......+..+.+.++...+..|.++|
T Consensus      1034 ~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1034 RIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444442222333333334444555555555555555555555555555555555555555555555555554


Q ss_pred             H
Q psy5718         479 T  479 (720)
Q Consensus       479 ~  479 (720)
                      .
T Consensus      1114 e 1114 (1930)
T KOG0161|consen 1114 E 1114 (1930)
T ss_pred             H
Confidence            3

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.23  E-value=0.34  Score=61.02  Aligned_cols=77  Identities=18%  Similarity=0.251  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM  498 (720)
Q Consensus       422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~  498 (720)
                      +..++.++..++.+......++......+..+...+.....+++.+..+++.+..++..+...+..+..++..++..
T Consensus       276 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  352 (1179)
T TIGR02168       276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE  352 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444555555555555544444444444444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR00606 rad50 rad50

Probab=97.20  E-value=0.81  Score=59.18  Aligned_cols=25  Identities=8%  Similarity=-0.101  Sum_probs=12.6

Q ss_pred             hhHHHHHHHhhhhhhHhhHhhhhcc
Q psy5718         543 EFTVARLYISKMKWRNGETVKEDEQ  567 (720)
Q Consensus       543 ~~~~~~~~~~~~~~~~~~~~~~~~~  567 (720)
                      +..-++-.+..+++.+..+..-+..
T Consensus       935 ~~~~~~~~~~~~~~~~~~~~~~~~~  959 (1311)
T TIGR00606       935 SNKKAQDKVNDIKEKVKNIHGYMKD  959 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555544443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=97.19  E-value=3.1e-05  Score=90.33  Aligned_cols=76  Identities=38%  Similarity=0.424  Sum_probs=64.0

Q ss_pred             hhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc
Q psy5718         140 EGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG  219 (720)
Q Consensus       140 ~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V  219 (720)
                      .....+..++++.|.+++++|++|..+....+.......   ++.|||||+||. -+...|.++++..++|++|..+|.+
T Consensus       486 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~  561 (568)
T COG5059         486 KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDV  561 (568)
T ss_pred             hhccchhhcccchhhhhcccchhhhhcccchhhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhh
Confidence            457788889999999999999999888755443322222   799999999999 8888999999999999999999988

>PRK03918 chromosome segregation protein; Provisional

Probab=97.14  E-value=1.2  Score=54.90  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHH
Q psy5718         487 TTSTELQQIKDMSNHQKKRINE  508 (720)
Q Consensus       487 ~l~~el~~l~~~~~~~~kr~~e  508 (720)
                      .+..++..++.-...-+.++.+
T Consensus       402 ~l~~~i~~l~~~~~~~~~~i~e  423 (880)
T PRK03918        402 EIEEEISKITARIGELKKEIKE  423 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.14  E-value=0.57  Score=59.83  Aligned_cols=92  Identities=25%  Similarity=0.397  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         420 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMS  499 (720)
Q Consensus       420 ~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~  499 (720)
                      ...+.++.++..++.+.......+.++...++++.........++......+..+..+...+...+..+..++.+++...
T Consensus       828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~  907 (1163)
T COG1196         828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEI  907 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444555555555555556666666666666666666666677777777777777788888888888888888


Q ss_pred             hHHHHHHHHHHH
Q psy5718         500 NHQKKRINEMLT  511 (720)
Q Consensus       500 ~~~~kr~~e~~~  511 (720)
                      ..+..+++.+..
T Consensus       908 ~~~~~~~~~l~~  919 (1163)
T COG1196         908 EKLRERLEELEA  919 (1163)
T ss_pred             HHHHHHHHHHHH
Confidence            888888776533

>PRK11637 AmiB activator; Provisional

Probab=97.07  E-value=0.036  Score=62.86  Aligned_cols=48  Identities=6%  Similarity=0.214  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5718         467 KNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLL  514 (720)
Q Consensus       467 ~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~  514 (720)
                      ...++..+..++......+..++.++.++++-...+++.+...+..+-
T Consensus        87 ~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y  134 (428)
T PRK11637         87 ASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF  134 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444445555555555555555555555444444333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.07  E-value=0.48  Score=59.79  Aligned_cols=10  Identities=40%  Similarity=0.388  Sum_probs=4.8

Q ss_pred             HHHHHHhhhh
Q psy5718         546 VARLYISKMK  555 (720)
Q Consensus       546 ~~~~~~~~~~  555 (720)
                      .|+-+|.-+|
T Consensus       559 ~a~~~i~~l~  568 (1164)
T TIGR02169       559 VAKEAIELLK  568 (1164)
T ss_pred             HHHHHHHHHH
Confidence            3555554433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK03918 chromosome segregation protein; Provisional

Probab=97.06  E-value=0.51  Score=58.14  Aligned_cols=20  Identities=10%  Similarity=0.227  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHH
Q psy5718         619 RLYQQLDEKDEEINQQSQYA  638 (720)
Q Consensus       619 ~~~~q~~~lrdei~~k~~~~  638 (720)
                      .+..+++.|+++|..-...+
T Consensus       456 ~~~~ei~~l~~~~~~l~~~~  475 (880)
T PRK03918        456 EYTAELKRIEKELKEIEEKE  475 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444433

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.06  E-value=0.54  Score=59.36  Aligned_cols=6  Identities=33%  Similarity=0.617  Sum_probs=2.7

Q ss_pred             ecCCCC
Q psy5718          62 VFKPNA   67 (720)
Q Consensus        62 VF~~~a   67 (720)
                      |+||+.
T Consensus        28 i~G~NG   33 (1164)
T TIGR02169        28 ISGPNG   33 (1164)
T ss_pred             EECCCC
Confidence            445543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.05  E-value=0.19  Score=64.05  Aligned_cols=11  Identities=0%  Similarity=-0.025  Sum_probs=6.0

Q ss_pred             eeEEEEEEEee
Q psy5718         160 HSVFLINVKQE  170 (720)
Q Consensus       160 H~IftI~v~q~  170 (720)
                      +|=++|++.-.
T Consensus        77 ~A~V~l~fdN~   87 (1163)
T COG1196          77 YAEVELTFDNS   87 (1163)
T ss_pred             ceEEEEEEeCC
Confidence            45566665443

>KOG0977|consensus

Probab=97.01  E-value=0.22  Score=57.68  Aligned_cols=250  Identities=16%  Similarity=0.193  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Q psy5718         382 LITTARRDYEQLQGEMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD  458 (720)
Q Consensus       382 ~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d  458 (720)
                      ...+..+....++.+|.+...+++.++..+   ......++.+...+...++.++.+..-++...+.++-.+..|..+-.
T Consensus       100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~  179 (546)
T KOG0977|consen  100 LLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENS  179 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334444444444445555555555555544   22344555555555666666666666666666665555554444433


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccc
Q psy5718         459 QKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAG  538 (720)
Q Consensus       459 ~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~  538 (720)
                      .--.++...++++++=..--...++...+|-.+|+-++   ...+..|.|.....-+|..      +.+           
T Consensus       180 rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~---~~h~~eI~e~~~~~~rd~t------~~~-----------  239 (546)
T KOG0977|consen  180 RLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK---RIHKQEIEEERRKARRDTT------ADN-----------  239 (546)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---hccHHHHHHHHHHHhhccc------ccc-----------
Confidence            33333333333333222222233344444444443333   3344667777666666663      111           


Q ss_pred             cchhhhH-HHHHHHhhhhhhHhhHhhhhcc-cc--cchhHHHHhh--------------hCCCCCCcchhhcccCccccc
Q psy5718         539 KLEEEFT-VARLYISKMKWRNGETVKEDEQ-VN--LADPVDMAAS--------------IAPTPESAPASILPAIPGSGL  600 (720)
Q Consensus       539 ~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~  600 (720)
                        -++|- =..+=|-.|+.+-...+.+.+. +|  ....++++..              .-+..-..++.|=++|..-|.
T Consensus       240 --r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~  317 (546)
T KOG0977|consen  240 --REYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELES  317 (546)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccc
Confidence              11111 0122344555555555555544 22  1122222220              001111223333233322222


Q ss_pred             cccccchHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhccccccc
Q psy5718         601 MLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQ  659 (720)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~~~q~~~lrdei~~k~~~~~~l~~~~~~~~~~~~~~~~~~  659 (720)
                      .    ......++++++-.|......-...++.|...|.+++.+  .+.-+..|+.|.-
T Consensus       318 ~----n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mRee--c~~l~~Elq~LlD  370 (546)
T KOG0977|consen  318 R----NSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREE--CQQLSVELQKLLD  370 (546)
T ss_pred             c----ChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHH--HHHHHHHHHHhhc
Confidence            2    222234455555555555556777788888888888888  6666666666643

>KOG0996|consensus

Probab=96.95  E-value=0.92  Score=56.14  Aligned_cols=79  Identities=24%  Similarity=0.336  Sum_probs=42.1

Q ss_pred             HHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5718         436 NESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLK  515 (720)
Q Consensus       436 ~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~  515 (720)
                      +.++.+..+|--.++-.+........+++.++.+++..+..+..++...++.+.++++.++...+..+.| .+++..|++
T Consensus       530 L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~-~kVl~al~r  608 (1293)
T KOG0996|consen  530 LLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSR-NKVLDALMR  608 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHH
Confidence            3333333333333344444444444455555555555555555555666666666666666655555555 556666664

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.77  E-value=2.1  Score=52.16  Aligned_cols=96  Identities=16%  Similarity=0.204  Sum_probs=55.7

Q ss_pred             HHHHHhhhhhhHhhHhhhhcccc------------cchhHHHHhhhCCCCCCcchhhcccCccccccccccchHHhhhHH
Q psy5718         547 ARLYISKMKWRNGETVKEDEQVN------------LADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLE  614 (720)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  614 (720)
                      +++=+++=++|.-.+..++..++            |.+.+...++.+..|...+|+|=.+|-....+|.- .......++
T Consensus       292 ~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~k-k~~~~~~~q  370 (775)
T PF10174_consen  292 LKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEK-KQAQIEKLQ  370 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            44555555666666766665544            67888888999999999999984444332322111 111112333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5718         615 EERERLYQQLDEKDEEINQQSQYAEKLKE  643 (720)
Q Consensus       615 ~~~~~~~~q~~~lrdei~~k~~~~~~l~~  643 (720)
                      +-++.+.-.+..++|.++-+...|.+|..
T Consensus       371 eE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~  399 (775)
T PF10174_consen  371 EEKSRLQGEIEDLRDMLDKKERKINVLQK  399 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555565666666666666644433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.58  E-value=0.86  Score=49.22  Aligned_cols=89  Identities=21%  Similarity=0.306  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         410 EVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQK----SQEVETKNKEFETLTEELTLKQTTL  485 (720)
Q Consensus       410 q~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~----~~e~e~~~~e~~~l~~el~~~~~~~  485 (720)
                      ...+.+...+..+..++.++..|+..+.+++..+.++.+.+..-...|...    -.++...+.+++....+...+...-
T Consensus       213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K  292 (312)
T PF00038_consen  213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVK  292 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            335556666777777777777777777777777777766665433333322    2223333444444444444444555


Q ss_pred             HHHHHHHHHHHHH
Q psy5718         486 NTTSTELQQIKDM  498 (720)
Q Consensus       486 ~~l~~el~~l~~~  498 (720)
                      .+|+.|+..-+.+
T Consensus       293 ~~Ld~EIatYR~L  305 (312)
T PF00038_consen  293 LALDAEIATYRKL  305 (312)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHH
Confidence            5555555544443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.55  E-value=1.2  Score=48.03  Aligned_cols=88  Identities=20%  Similarity=0.252  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccc
Q psy5718         461 SQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKL  540 (720)
Q Consensus       461 ~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~  540 (720)
                      .+.+......+..+.+|+......+.+|+.+++.|+.....-.++|.++...+-.++.++...|+.-             
T Consensus       201 ~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~l-------------  267 (312)
T PF00038_consen  201 RQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAEL-------------  267 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred             cccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhcc-------------
Confidence            3334455677888888999999999999999999999999999999998888888888888877554             


Q ss_pred             hhhhHHHHHHHhhhhhhHhhH
Q psy5718         541 EEEFTVARLYISKMKWRNGET  561 (720)
Q Consensus       541 e~~~~~~~~~~~~~~~~~~~~  561 (720)
                      |.|..-+|-=|..+-.|...|
T Consensus       268 e~el~~l~~~~~~~~~ey~~L  288 (312)
T PF00038_consen  268 EEELAELREEMARQLREYQEL  288 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHH
Confidence            555554444444444444444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR00606 rad50 rad50

Probab=96.54  E-value=4.5  Score=52.52  Aligned_cols=78  Identities=17%  Similarity=0.180  Sum_probs=38.9

Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHhHHhhh
Q psy5718         447 LQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE---MLTNLLKDLCEIGLV  523 (720)
Q Consensus       447 ~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e---~~~~l~~dl~e~~~~  523 (720)
                      ++....+....++...++++...++..+..++......+..+..++.+++......-.....   .+...+.+|..+...
T Consensus       880 l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  959 (1311)
T TIGR00606       880 LQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKD  959 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555555555555555555555555566666666666655543333233322   234444444444444


Q ss_pred             h
Q psy5718         524 I  524 (720)
Q Consensus       524 ~  524 (720)
                      |
T Consensus       960 i  960 (1311)
T TIGR00606       960 I  960 (1311)
T ss_pred             H
Confidence            4

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4674|consensus

Probab=96.53  E-value=3.7  Score=53.65  Aligned_cols=107  Identities=17%  Similarity=0.166  Sum_probs=59.2

Q ss_pred             cchhHHHHhhhCCCCCCcchhhcccCcccc-------------ccccc-------c--chHHhhhHHHHHHHHHHHHHHH
Q psy5718         570 LADPVDMAASIAPTPESAPASILPAIPGSG-------------LMLGS-------L--SNEERQKLEEERERLYQQLDEK  627 (720)
Q Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-------~--~~~~~~~~~~~~~~~~~q~~~l  627 (720)
                      .+|.+..+++.+..+++.++..|..|.+.-             .|+..       +  -+-.+.++-..+..+.+|++.+
T Consensus       324 ~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~  403 (1822)
T KOG4674|consen  324 NTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESL  403 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Confidence            567777777777777777766544443110             01000       0  0001122222566788899888


Q ss_pred             HHHHHHHhHHHHHHHHH-------HHH--HHhhhcccccccchhHHHHHHhhhccchH
Q psy5718         628 DEEINQQSQYAEKLKEQ-------IME--QEEVSGLLVCGQTNERREQARKDLKGLED  676 (720)
Q Consensus       628 rdei~~k~~~~~~l~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (720)
                      --||..++..+.-.+.+       +.+  -+=.+-=..+..+++.++.+.+++.++|.
T Consensus       404 ~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~  461 (1822)
T KOG4674|consen  404 KLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEK  461 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999998888222221       001  11111223455677788888888888875

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.52  E-value=0.14  Score=60.36  Aligned_cols=165  Identities=27%  Similarity=0.384  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHH---
Q psy5718         391 EQLQGEMTRLTQENESAKEEV------KELITTARRDYEQLQ-------GEMTRLTQENESAKEEVKEVLQALEELA---  454 (720)
Q Consensus       391 ~ql~~Ei~~~~q~~ekLkeq~------eell~~~~~~~e~lq-------~el~~lq~e~~~~keevke~~qaleel~---  454 (720)
                      +++..++++.....+.+.+++      -+++.......++|+       +.+..|+.+-+..+..+.+-...|++..   
T Consensus       359 ~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~  438 (594)
T PF05667_consen  359 KQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNR  438 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence            334444444444444444333      334444444444444       3556666666666655555555555432   


Q ss_pred             -hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhHHhhhhcCCCccc
Q psy5718         455 -VNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM--SNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMK  531 (720)
Q Consensus       455 -~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~--~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~  531 (720)
                       ..+-++-++++..+.++..+..|+..|......|..+++.+-..  -....+||.||..|+=|=-.||-.|+.....+.
T Consensus       439 ~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQ  518 (594)
T PF05667_consen  439 ESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQ  518 (594)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence             33446667788899999999999999999999999999998776  456678999999999999999999997642221


Q ss_pred             c-cCCccccchhhhHHH-HHHHhhhh
Q psy5718         532 V-TSDGAGKLEEEFTVA-RLYISKMK  555 (720)
Q Consensus       532 ~-~~~~~~~~e~~~~~~-~~~~~~~~  555 (720)
                      . .-..+|+++.-|||+ -+.+...|
T Consensus       519 keiN~l~gkL~RtF~v~dElifrdAK  544 (594)
T PF05667_consen  519 KEINSLTGKLDRTFTVTDELIFRDAK  544 (594)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            1 124569999999987 34444444

>PRK09039 hypothetical protein; Validated

Probab=96.49  E-value=0.23  Score=54.88  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         412 KELITTARRDYEQLQGEMTRLTQE-------NESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTT  484 (720)
Q Consensus       412 eell~~~~~~~e~lq~el~~lq~e-------~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~  484 (720)
                      ++.+...+..|+.++.+-.+|+.-       ...++.....+..+|.+....|.+..-.|.-++.+++.|+..|+.+.+.
T Consensus        80 ~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~  159 (343)
T PRK09039         80 QDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAA  159 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444432       2233444556667788888888888888888899999999888888888


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Q psy5718         485 LNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEI  520 (720)
Q Consensus       485 ~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~  520 (720)
                      +.+.+.+....+.....-+.+|...+..-.++|..+
T Consensus       160 L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~  195 (343)
T PRK09039        160 LDASEKRDRESQAKIADLGRRLNVALAQRVQELNRY  195 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888888888888887777888888776666666555

>KOG0250|consensus

Probab=96.44  E-value=0.76  Score=56.57  Aligned_cols=106  Identities=25%  Similarity=0.334  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         412 KELITTARRDYEQLQGEMTRLTQENESAKEEV-KEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTST  490 (720)
Q Consensus       412 eell~~~~~~~e~lq~el~~lq~e~~~~keev-ke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~  490 (720)
                      ++.+..+..++.++..++..+.......+++. +++--.+++.+..+.+-.++|+...-.+..|++++.........-+.
T Consensus       357 ~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~e  436 (1074)
T KOG0250|consen  357 KEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEE  436 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            44444555555666666666666666666666 67777778888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy5718         491 ELQQIKDMSNHQKKRINEMLTNLLKDLC  518 (720)
Q Consensus       491 el~~l~~~~~~~~kr~~e~~~~l~~dl~  518 (720)
                      |...++....+.+|+|..+ +.-|+||.
T Consensus       437 e~~~i~~~i~~l~k~i~~~-~~~l~~lk  463 (1074)
T KOG0250|consen  437 EKEHIEGEILQLRKKIENI-SEELKDLK  463 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            8888888888888888763 44445543

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.30  E-value=1.1  Score=48.50  Aligned_cols=107  Identities=21%  Similarity=0.221  Sum_probs=52.5

Q ss_pred             HHHHhHHHHHHHhcc-c--ccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccccccccccCCC
Q psy5718         255 EEHKKAIEYEKELGE-T--RLL--LQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDG  329 (720)
Q Consensus       255 ~ETlsTL~fa~rak~-I--kn~--~~vN~~~~~~~~~Lk~ei~~Lk~EL~~l~nlrk~~~qdl~~r~g~~~~~~e~~~~~  329 (720)
                      +|.=.-|.+|+++-+ +  +|.  ...|...+.....-...|..|+.+|....+|.+.+..+-......+.... +....
T Consensus        72 eEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~-~~~~~  150 (306)
T PF04849_consen   72 EEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSEST-PLRRN  150 (306)
T ss_pred             HHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCc-ccccc
Confidence            344455666666522 1  111  12233555666777777888888887766665555443322111111100 00000


Q ss_pred             CchHHHhHHHHHhhhhHHHHHHHHHHHhhhhcccccc
Q psy5718         330 GSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCEL  366 (720)
Q Consensus       330 ~~~~~~qki~~le~~Le~L~~~~~qLv~dn~~l~~el  366 (720)
                      .+....+    --.+++.|+...+.|-.+|..++.+.
T Consensus       151 ~~~~~~~----~~~~le~Lq~Klk~LEeEN~~LR~Ea  183 (306)
T PF04849_consen  151 ESSLSSQ----KCIQLEALQEKLKSLEEENEQLRSEA  183 (306)
T ss_pred             ccccccc----cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000011    23456677777777777888777765

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.17  E-value=4  Score=48.20  Aligned_cols=168  Identities=13%  Similarity=0.177  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhHHHHHHHHHH
Q psy5718         380 VKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQE----------NESAKEEVKEVLQA  449 (720)
Q Consensus       380 ~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e----------~~~~keevke~~qa  449 (720)
                      ....+.+..+|..+..|+.... .+++....+...+..++.....+..++.++++.          .....+++.++...
T Consensus       285 ~~i~~~Id~Lyd~lekE~~A~~-~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~  363 (569)
T PRK04778        285 EEIQERIDQLYDILEREVKARK-YVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQ  363 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHH
Confidence            3455566777777777665443 355555666777777777777888888888777          45555555555555


Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCc
Q psy5718         450 LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGD  529 (720)
Q Consensus       450 leel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~  529 (720)
                      +..+......+.........+.+.+.+.+.........+...++.|+.....-++++..    +-+.|+++...+-..  
T Consensus       364 ~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~----~~~~L~~ikr~l~k~--  437 (569)
T PRK04778        364 YDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLER----YRNKLHEIKRYLEKS--  437 (569)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHc--
Confidence            55555555555555555666666666666666666666666666666665555555544    334556666665433  


Q ss_pred             ccccCCccccchhhhHHHHHHHhhhhh
Q psy5718         530 MKVTSDGAGKLEEEFTVARLYISKMKW  556 (720)
Q Consensus       530 ~~~~~~~~~~~e~~~~~~~~~~~~~~~  556 (720)
                        ..|.+....-.-|..+.=.|..++.
T Consensus       438 --~lpgip~~y~~~~~~~~~~i~~l~~  462 (569)
T PRK04778        438 --NLPGLPEDYLEMFFEVSDEIEALAE  462 (569)
T ss_pred             --CCCCCcHHHHHHHHHHHHHHHHHHH
Confidence              1333333444445555444444433

>KOG1029|consensus

Probab=96.14  E-value=2  Score=51.09  Aligned_cols=28  Identities=7%  Similarity=-0.094  Sum_probs=20.2

Q ss_pred             hhhhHHHHHHHhhhhhhHhhHhhhhccc
Q psy5718         541 EEEFTVARLYISKMKWRNGETVKEDEQV  568 (720)
Q Consensus       541 e~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (720)
                      -++....+-.+.-|-+|.+.++.|-+-+
T Consensus       471 kt~ie~~~~q~e~~isei~qlqarikE~  498 (1118)
T KOG1029|consen  471 KTEIEEVTKQRELMISEIDQLQARIKEL  498 (1118)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3455566777788888888888887643

>KOG0977|consensus

Probab=96.13  E-value=2.4  Score=49.40  Aligned_cols=140  Identities=19%  Similarity=0.266  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh------------------------
Q psy5718         387 RRDYEQLQGEMTRLTQENESAKEEVKELIT---TARRDYEQLQGEMTRLTQENESA------------------------  439 (720)
Q Consensus       387 ~~l~~ql~~Ei~~~~q~~ekLkeq~eell~---~~~~~~e~lq~el~~lq~e~~~~------------------------  439 (720)
                      .+.++.+.++...+..++.+|-.++.....   ......-++|..+..|.++++-.                        
T Consensus       161 krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r  240 (546)
T KOG0977|consen  161 KRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNR  240 (546)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccch
Confidence            444556666666666666666666622222   11111123344444443333333                        


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHH----H-HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5718         440 KEEVKEVLQALEELAVNYDQKSQEVET----K-NKEFETLT--------------EELTLKQTTLNTTSTELQQIKDMSN  500 (720)
Q Consensus       440 keevke~~qaleel~~n~d~~~~e~e~----~-~~e~~~l~--------------~el~~~~~~~~~l~~el~~l~~~~~  500 (720)
                      ...-.++-+|+.++-..||..+..-..    . .++++.++              +|+...-..+..|.+.|++|...+.
T Consensus       241 ~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~  320 (546)
T KOG0977|consen  241 EYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNS  320 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccCh
Confidence            333458889999999999988766222    2 44455444              9999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhhcC
Q psy5718         501 HQKKRINEMLTNLLKDLCEIGLVIGS  526 (720)
Q Consensus       501 ~~~kr~~e~~~~l~~dl~e~~~~~~~  526 (720)
                      .--++|.++-..|=.|.-=+...+..
T Consensus       321 ~L~~~I~dL~~ql~e~~r~~e~~L~~  346 (546)
T KOG0977|consen  321 ALEKRIEDLEYQLDEDQRSFEQALND  346 (546)
T ss_pred             hHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence            99999999666665655555555533

>KOG0933|consensus

Probab=96.04  E-value=2.1  Score=52.35  Aligned_cols=123  Identities=17%  Similarity=0.259  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhH
Q psy5718         383 ITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQ  462 (720)
Q Consensus       383 ~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~  462 (720)
                      .+....+|+.++-|.++..++....+.++.++...    .+.+-.++..+.....++..+++.+++.|.+...+..+-..
T Consensus       810 ~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~----~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt  885 (1174)
T KOG0933|consen  810 LEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQ----ISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDT  885 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhH
Confidence            33444555555555555555555555555444333    34455666666666666667777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718         463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM  509 (720)
Q Consensus       463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~  509 (720)
                      ++...-...+....+.+...-...-|.-|+..++.-.+.-+|++..+
T Consensus       886 ~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l  932 (1174)
T KOG0933|consen  886 EISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKL  932 (1174)
T ss_pred             HHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence            77666666666666666666666777777777777777777775553

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.00  E-value=0.0018  Score=77.99  Aligned_cols=122  Identities=16%  Similarity=0.273  Sum_probs=0.0

Q ss_pred             HHHHHhhhhhhHhhHhhhhccc------ccchhHHHHhhhCCCCCCcchhh---cccCccccccccccch---HHhhhHH
Q psy5718         547 ARLYISKMKWRNGETVKEDEQV------NLADPVDMAASIAPTPESAPASI---LPAIPGSGLMLGSLSN---EERQKLE  614 (720)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~  614 (720)
                      .|.=|.++..|.|.|-.+....      .|...+......+..|+......   +..|+++-   ..+.+   +.....+
T Consensus       457 l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~ql---e~lq~~l~~~~~~~~  533 (713)
T PF05622_consen  457 LRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILELQSQL---EELQKSLQEQGSKSE  533 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhcc
Confidence            4555677888888884433222      36777777777778888777665   44443221   11110   1111121


Q ss_pred             ---HHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHh-hhcccccccchhHHHHHHhhhccchH
Q psy5718         615 ---EERERLYQQLD---EKDEEINQQSQYAEKLKEQIMEQEE-VSGLLVCGQTNERREQARKDLKGLED  676 (720)
Q Consensus       615 ---~~~~~~~~q~~---~lrdei~~k~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (720)
                         ..+..|+.+++   .+++++..+...|+.+.++  -... ..++.+|...-.+++   +|++.+|+
T Consensus       534 d~~~lk~~le~~~~~l~e~~~e~~~~~~~le~l~~~--~~~~~~~ki~~Le~~L~~k~---~e~~~~ee  597 (713)
T PF05622_consen  534 DSSELKQKLEEHLEKLRELKDELQKKREQLEELEQE--LNQSLSQKIEELEEALQKKE---EEMRAMEE  597 (713)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHhH---HHHHhHHH
Confidence               25566666666   4556666666666655554  2222 334444433333333   35666665

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.96  E-value=2.6  Score=44.12  Aligned_cols=151  Identities=16%  Similarity=0.257  Sum_probs=69.0

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5718         369 LEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ  448 (720)
Q Consensus       369 ~~~~~~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~q  448 (720)
                      ++.+.....+++..++......+..-++..+-..++..-...++..+..+....+.+...+..|..++......++.+..
T Consensus        83 lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~  162 (237)
T PF00261_consen   83 LENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA  162 (237)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence            34444555555555555555555544455555555544444444445444555555555555555555555555554444


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHhH
Q psy5718         449 ALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE---MLTNLLKDLCE  519 (720)
Q Consensus       449 aleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e---~~~~l~~dl~e  519 (720)
                      +.+.....-+.....+..+...+................|+.++..|.+-....|.+...   -|...|.||++
T Consensus       163 ~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~  236 (237)
T PF00261_consen  163 SEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNE  236 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            444332222222222222222222222222233344555555555555554444444444   34444555544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK11637 AmiB activator; Provisional

Probab=95.91  E-value=4.2  Score=46.19  Aligned_cols=22  Identities=14%  Similarity=0.135  Sum_probs=10.2

Q ss_pred             hHHHHHhhhhHHHHHHHHHHHh
Q psy5718         336 QKISFLENNLDQLTKVHKQLVR  357 (720)
Q Consensus       336 qki~~le~~Le~L~~~~~qLv~  357 (720)
                      ..|..++..++...+...++++
T Consensus       110 ~eI~~~q~~l~~~~~~l~~rlr  131 (428)
T PRK11637        110 ASIAKLEQQQAAQERLLAAQLD  131 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=95.89  E-value=0.91  Score=44.83  Aligned_cols=130  Identities=24%  Similarity=0.349  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHhhhhhhhHH------
Q psy5718         397 MTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKE-------VLQALEELAVNYDQKSQE------  463 (720)
Q Consensus       397 i~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke-------~~qaleel~~n~d~~~~e------  463 (720)
                      ++..-..++.=|+++-+...+++.+++.++.+|..++.+....-++|..       ..+.|.+...||+..+.+      
T Consensus         4 i~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AY   83 (159)
T PF05384_consen    4 IKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAY   83 (159)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHH
Confidence            3344455566667777777777777777777777777777666666654       445677778888776654      


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHhHHhhhhcC
Q psy5718         464 --VETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM---SNHQKKRINEMLTNLLKDLCEIGLVIGS  526 (720)
Q Consensus       464 --~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~---~~~~~kr~~e~~~~l~~dl~e~~~~~~~  526 (720)
                        +.+...++..++++-.++...-+.|+..|.+++++   ..+---+|.=+|+-|--||+.+|..+.+
T Consensus        84 e~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~  151 (159)
T PF05384_consen   84 EEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIED  151 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence              56667788888888888889999999999999888   4455567777888888999999988765

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.89  E-value=2.5  Score=43.34  Aligned_cols=87  Identities=21%  Similarity=0.368  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5718         381 KLITTARRDYEQLQGEMTRLTQENESAKEEV------KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELA  454 (720)
Q Consensus       381 k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~------eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~  454 (720)
                      +...++....++|.+-+.....+++.|..++      ...+..++..+..++.++..|.-+++.+......+.+.-.+|.
T Consensus        48 k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~  127 (201)
T PF13851_consen   48 KLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY  127 (201)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555666666777777777777777777776      4445556666666777777777777777777777777777777


Q ss_pred             hhhhhhhHHHHHH
Q psy5718         455 VNYDQKSQEVETK  467 (720)
Q Consensus       455 ~n~d~~~~e~e~~  467 (720)
                      ..|....++|..+
T Consensus       128 ~kf~~~i~evqQk  140 (201)
T PF13851_consen  128 RKFESAIQEVQQK  140 (201)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777777766

>KOG0976|consensus

Probab=95.85  E-value=0.95  Score=53.81  Aligned_cols=98  Identities=26%  Similarity=0.314  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5718         422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNH  501 (720)
Q Consensus       422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~  501 (720)
                      ..++..+...||+-...+.++.++....||++-.....-.+++..+.-++....+.|-.+...++++..+++++-+-.+.
T Consensus       115 c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~  194 (1265)
T KOG0976|consen  115 CLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANR  194 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHH
Confidence            34556677788888888888888888888888888888888999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHhH
Q psy5718         502 QKKRINEMLTNLLKDLCE  519 (720)
Q Consensus       502 ~~kr~~e~~~~l~~dl~e  519 (720)
                      .++-..+.+..+=-|+++
T Consensus       195 en~~le~k~~k~~e~~~~  212 (1265)
T KOG0976|consen  195 EKKALEEKLEKFKEDLIE  212 (1265)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            888877777766666553

>KOG0996|consensus

Probab=95.84  E-value=6  Score=49.42  Aligned_cols=65  Identities=23%  Similarity=0.329  Sum_probs=41.3

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5718         450 LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLL  514 (720)
Q Consensus       450 leel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~  514 (720)
                      |......++++..++..+..++..+..|+.++...+..+..+..+++...+.-+.|+.|+-+++-
T Consensus       530 L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~  594 (1293)
T KOG0996|consen  530 LLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLS  594 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444555566666666666666666677777777777777788889998776553

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.83  E-value=6.7  Score=47.90  Aligned_cols=137  Identities=20%  Similarity=0.250  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHH--------HHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         415 ITTARRDYEQLQGEMTRL--------TQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLN  486 (720)
Q Consensus       415 l~~~~~~~e~lq~el~~l--------q~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~  486 (720)
                      +..+..++++++..+...        +++.+..+.+++++...++.|...+..+...+...+-+...|..-.-.+     
T Consensus       438 lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~-----  512 (775)
T PF10174_consen  438 LEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKK-----  512 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchh-----
Confidence            334455555555555444        2333333333444444444444333333333333333333333332233     


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhhhHHHHHHHhhhhhhHhhHhhhhc
Q psy5718         487 TTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDE  566 (720)
Q Consensus       487 ~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  566 (720)
                        .+++.+|.=....++.++..|.+-|-+       .-.+. +   ...--+.+|.+.+-.|-=.++.+.||-.|...-+
T Consensus       513 --~s~i~~l~I~lEk~rek~~kl~~ql~k-------~~~~~-e---~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~  579 (775)
T PF10174_consen  513 --DSEIERLEIELEKKREKHEKLEKQLEK-------LRANA-E---LRDRIQQLEQEVTRYREESEKAQAEVERLLDILR  579 (775)
T ss_pred             --hhHHHHHHHHHHHhhhHHHHHHHHHHH-------HHhCH-h---hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              333333333344444555565555555       11111 1   1123346777766666678888888888876655


Q ss_pred             ccc
Q psy5718         567 QVN  569 (720)
Q Consensus       567 ~~~  569 (720)
                      .++
T Consensus       580 ~~E  582 (775)
T PF10174_consen  580 EAE  582 (775)
T ss_pred             HHH
Confidence            544

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0971|consensus

Probab=95.80  E-value=2  Score=51.93  Aligned_cols=198  Identities=25%  Similarity=0.377  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccccccccccCCCCchHHHhHHHHHhhhhHHHHHHHHHHHhhhhcccc
Q psy5718         285 KDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRC  364 (720)
Q Consensus       285 ~~Lk~ei~~Lk~EL~~l~nlrk~~~qdl~~r~g~~~~~~e~~~~~~~~~~~qki~~le~~Le~L~~~~~qLv~dn~~l~~  364 (720)
                      ..|+.++..|.++|+.+             |.+..-       +.......+|+   .-.+++++.+-.+++..-++|+.
T Consensus       227 ~eLr~QvrdLtEkLetl-------------R~kR~E-------Dk~Kl~Elekm---kiqleqlqEfkSkim~qqa~Lqr  283 (1243)
T KOG0971|consen  227 EELRAQVRDLTEKLETL-------------RLKRAE-------DKAKLKELEKM---KIQLEQLQEFKSKIMEQQADLQR  283 (1243)
T ss_pred             HHHHHHHHHHHHHHHHH-------------Hhhhhh-------hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44999999999999999             665431       11111112222   23456777777777777677666


Q ss_pred             cchhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5718         365 ELPKLEKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVK  444 (720)
Q Consensus       365 elp~~~~~~~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevk  444 (720)
                      ++.      ++--|. +-.-++...|++.++++..-..++              .-|-|=...+...||.|.++++|.+.
T Consensus       284 el~------raR~e~-keaqe~ke~~k~emad~ad~iEma--------------TldKEmAEERaesLQ~eve~lkEr~d  342 (1243)
T KOG0971|consen  284 ELK------RARKEA-KEAQEAKERYKEEMADTADAIEMA--------------TLDKEMAEERAESLQQEVEALKERVD  342 (1243)
T ss_pred             HHH------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--------------HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            541      111111 111111222222222222222222              22222223333444444444444444


Q ss_pred             HHHHHHHHHHhhhh--------hhhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhHH
Q psy5718         445 EVLQALEELAVNYD--------QKSQEVETKNKEFETLTEELT--------------LKQTTLNTTSTELQQIKDMSNHQ  502 (720)
Q Consensus       445 e~~qaleel~~n~d--------~~~~e~e~~~~e~~~l~~el~--------------~~~~~~~~l~~el~~l~~~~~~~  502 (720)
                      |+..-||=|+....        ..+=+...+...|..|.+-|-              .....+.-..+|++.|+...+.-
T Consensus       343 eletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~L  422 (1243)
T KOG0971|consen  343 ELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERL  422 (1243)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44444444433322        123334444444444544442              23355566667777777777666


Q ss_pred             HHHHHHHHHHHHHHHhH-HhhhhcCC
Q psy5718         503 KKRINEMLTNLLKDLCE-IGLVIGSE  527 (720)
Q Consensus       503 ~kr~~e~~~~l~~dl~e-~~~~~~~~  527 (720)
                      ++++.. +.+.+-||-| |-.++|..
T Consensus       423 sr~~d~-aEs~iadlkEQVDAAlGAE  447 (1243)
T KOG0971|consen  423 SRELDQ-AESTIADLKEQVDAALGAE  447 (1243)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHhhcHH
Confidence            666555 5666677776 33444544

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=95.75  E-value=4.6  Score=48.79  Aligned_cols=94  Identities=18%  Similarity=0.316  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH--------------H
Q psy5718         418 ARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQ--------------T  483 (720)
Q Consensus       418 ~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~--------------~  483 (720)
                      .+.....+..|+.+|+.|+...+|.+..++..+.+|-.--.+..++.|.+--.+..+.++=..+.              .
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfs  622 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFS  622 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            34444566788888888888888888888877765543213334455555555555544443332              4


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy5718         484 TLNTTSTELQQIKDMSNHQKKRINEMLT  511 (720)
Q Consensus       484 ~~~~l~~el~~l~~~~~~~~kr~~e~~~  511 (720)
                      .|-+..++++-++...-.+-+=|.||=.
T Consensus       623 aLg~akrq~ei~~~~~~~~d~ei~~lk~  650 (697)
T PF09726_consen  623 ALGDAKRQLEIAQGQLRKKDKEIEELKA  650 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556666655555555555555333

; GO: 0016021 integral to membrane

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=95.74  E-value=1.2  Score=53.03  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5718         467 KNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE  508 (720)
Q Consensus       467 ~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e  508 (720)
                      +..+++.|..|+..+...+.+.-.+.+.|-.....+..||.+
T Consensus        85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~E  126 (617)
T PF15070_consen   85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAE  126 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444434444444444455555555

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.65  E-value=4.3  Score=44.38  Aligned_cols=121  Identities=20%  Similarity=0.290  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy5718         397 MTRLTQENESAKEEVKELITTARRDYEQLQGEMTRL----TQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFE  472 (720)
Q Consensus       397 i~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~l----q~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~  472 (720)
                      +....+.++.+...+.+.......+...+++....+    +++...++++++++.+.++.......+...++..+...++
T Consensus       163 L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~  242 (312)
T smart00787      163 LMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE  242 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444445555555555555555555554    5578888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy5718         473 TLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLC  518 (720)
Q Consensus       473 ~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~  518 (720)
                      ...++..+....+.+++..+++.+..+.+.-.++..-. .+|..++
T Consensus       243 ~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~-~~Le~l~  287 (312)
T smart00787      243 DLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQL-KLLQSLT  287 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHHHh
Confidence            88888888888888888877777777777777766633 3334443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=95.52  E-value=7.6  Score=46.34  Aligned_cols=30  Identities=20%  Similarity=0.325  Sum_probs=21.3

Q ss_pred             HHhHHHHHhhhhHHHHHHHHHHHhhhhccc
Q psy5718         334 QRQKISFLENNLDQLTKVHKQLVRDNADLR  363 (720)
Q Consensus       334 ~~qki~~le~~Le~L~~~~~qLv~dn~~l~  363 (720)
                      ....+..|...++.|...+...+++|..+.
T Consensus        85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls  114 (617)
T PF15070_consen   85 LQAEAEHLRKELESLEEQLQAQVENNEQLS  114 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677778888888888888877664

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.45  E-value=5.2  Score=43.93  Aligned_cols=89  Identities=22%  Similarity=0.324  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         412 KELITTARRDYEQLQGEMTRLTQENE----SAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNT  487 (720)
Q Consensus       412 eell~~~~~~~e~lq~el~~lq~e~~----~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~  487 (720)
                      .+++......+..|..++..|++...    .-.+++..+.+.|.++......+.+.+.+++.+.+.+..++....+....
T Consensus       176 ~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~  255 (325)
T PF08317_consen  176 DELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQE  255 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555555555555544322    23344455555555555444455555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHh
Q psy5718         488 TSTELQQIKDMSN  500 (720)
Q Consensus       488 l~~el~~l~~~~~  500 (720)
                      +..++++++...+
T Consensus       256 l~~eI~e~~~~~~  268 (325)
T PF08317_consen  256 LLAEIAEAEKIRE  268 (325)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555554433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=95.42  E-value=12  Score=48.14  Aligned_cols=66  Identities=17%  Similarity=0.220  Sum_probs=30.6

Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy5718         447 LQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTN  512 (720)
Q Consensus       447 ~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~  512 (720)
                      .+.++.+...+++..+++....+....+..++.+....-.....+|..++.--...+-++.++-..
T Consensus       468 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~  533 (1201)
T PF12128_consen  468 KEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQ  533 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444444444444444444444444444444444444444445554444444444455554433

>KOG0612|consensus

Probab=95.38  E-value=2.2  Score=53.16  Aligned_cols=22  Identities=36%  Similarity=0.416  Sum_probs=12.8

Q ss_pred             ccchHhHHHHHHHhhhhHHHHH
Q psy5718         672 KGLEDTVTKELQTLHNLRKLFV  693 (720)
Q Consensus       672 ~~~~~tv~~el~~l~~l~~~~~  693 (720)
                      +++|.-..+++-+|--+++.|-
T Consensus       789 ~~~Ekq~~~~~~~l~~~K~~~e  810 (1317)
T KOG0612|consen  789 KMLEKQLKKLLDELAELKKQLE  810 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666666666644443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.35  E-value=14  Score=48.42  Aligned_cols=41  Identities=7%  Similarity=0.004  Sum_probs=30.0

Q ss_pred             HHhhhccchHhHHHHHHHhhhhHHHHHHHHHhhhhcCcccc
Q psy5718         667 ARKDLKGLEDTVTKELQTLHNLRKLFVQDQVTSSQRWPMAT  707 (720)
Q Consensus       667 ~~~~~~~~~~tv~~el~~l~~l~~~~~~~~~~~~~~~~~~~  707 (720)
                      ..+.|.++-++|+++|...=+==+=.|.++..-++.-+.++
T Consensus      1230 ~Er~L~~s~eEVa~~l~~rI~~a~~~V~~mN~~L~~i~f~~ 1270 (1486)
T PRK04863       1230 REQKLAISSESVANIIRKTIQREQNRIRMLNQGLQNISFGQ 1270 (1486)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            34446699999999998776666667788887777666644

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.29  E-value=5.9  Score=51.81  Aligned_cols=8  Identities=13%  Similarity=0.418  Sum_probs=5.0

Q ss_pred             Ceeeecce
Q psy5718          54 GKFYLFDK   61 (720)
Q Consensus        54 ~k~F~FD~   61 (720)
                      +.+|.|+.
T Consensus        20 ~~~~~f~~   27 (1486)
T PRK04863         20 ARTFDLDE   27 (1486)
T ss_pred             ceEEEecC
Confidence            45677766

>KOG0250|consensus

Probab=95.11  E-value=13  Score=46.45  Aligned_cols=82  Identities=21%  Similarity=0.409  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         416 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQK-SQEVETKNKEFETLTEELTLKQTTLNTTSTELQQ  494 (720)
Q Consensus       416 ~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~-~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~  494 (720)
                      ...++.+..+..+....+....+.|.+++.+.--+.++....++. ..+.++...+++.|..+.......+++|..|++.
T Consensus       347 ~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~  426 (1074)
T KOG0250|consen  347 DDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNE  426 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555555555555555444444444433111 1122333333333333333333344444444444


Q ss_pred             HHH
Q psy5718         495 IKD  497 (720)
Q Consensus       495 l~~  497 (720)
                      +++
T Consensus       427 ~~~  429 (1074)
T KOG0250|consen  427 VKE  429 (1074)
T ss_pred             HHH
Confidence            433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.01  E-value=9.6  Score=44.54  Aligned_cols=13  Identities=23%  Similarity=0.327  Sum_probs=8.5

Q ss_pred             ceeeeeeccCCcc
Q psy5718         180 GKLYLVDLAGSEK  192 (720)
Q Consensus       180 skL~lVDLAGSEr  192 (720)
                      -.++.||=.|+=+
T Consensus        90 YqfcYv~~~g~V~  102 (546)
T PF07888_consen   90 YQFCYVDQKGEVR  102 (546)
T ss_pred             EEEEEECCCccEE
Confidence            3567777777644

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.00  E-value=1.9  Score=51.64  Aligned_cols=38  Identities=21%  Similarity=0.396  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy5718         415 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE  452 (720)
Q Consensus       415 l~~~~~~~e~lq~el~~lq~e~~~~keevke~~qalee  452 (720)
                      +.......+.+..++..++.+.+.+...+.++.+++..
T Consensus       218 l~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~  255 (650)
T TIGR03185       218 LKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS  255 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555555555555555555555555555444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=94.93  E-value=10  Score=44.43  Aligned_cols=32  Identities=16%  Similarity=0.110  Sum_probs=20.3

Q ss_pred             ccchhhhHHHHHHHhhhhhhHhhHhhhhcccc
Q psy5718         538 GKLEEEFTVARLYISKMKWRNGETVKEDEQVN  569 (720)
Q Consensus       538 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  569 (720)
                      +.+..|+.-++.-+.+++.|+.+|-.-...|.
T Consensus       284 ~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~  315 (522)
T PF05701_consen  284 ASAKKELEEAKKELEKAKEEASSLRASVESLR  315 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666677777777777766665554443

Several sequences in this family are described as being myosin heavy chain-like.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=94.88  E-value=3  Score=45.72  Aligned_cols=110  Identities=14%  Similarity=0.215  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy5718         399 RLTQENESAKEEVKELITTARRDYEQLQGEMTRL----TQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETL  474 (720)
Q Consensus       399 ~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~l----q~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l  474 (720)
                      ...+.+..+..++.+..+....++..++.....+    +.+.++++.++.++...++++..+.++...+++.+..+++.+
T Consensus       170 ~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~  249 (325)
T PF08317_consen  170 KQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEEL  249 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444555555555555555544433    567777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5718         475 TEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE  508 (720)
Q Consensus       475 ~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e  508 (720)
                      .++..+..+.+.+++.-++.-+-.+...-+++..
T Consensus       250 ~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~  283 (325)
T PF08317_consen  250 EEQKQELLAEIAEAEKIREECRGWTRSEVKRLKA  283 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            7777777777777777777666665555555544

>KOG4643|consensus

Probab=94.79  E-value=14  Score=45.53  Aligned_cols=101  Identities=16%  Similarity=0.231  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q psy5718         391 EQLQGEMTRLTQENESAKEEVKE---LITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETK  467 (720)
Q Consensus       391 ~ql~~Ei~~~~q~~ekLkeq~ee---ll~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~  467 (720)
                      ...+.++.+.....+++++|...   -+.-.....+.|.+.+..+.+||..+-.+|.-+-+- ..--++++|..-..+-.
T Consensus       498 ~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t-~qn~~~LEq~~n~lE~~  576 (1195)
T KOG4643|consen  498 NNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT-SQNGALLEQNNNDLELI  576 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHHHHHHHHhhhHHHHH
Confidence            44455888888888999998833   334445566778889999999999999999887766 55566666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         468 NKEFETLTEELTLKQTTLNTTSTEL  492 (720)
Q Consensus       468 ~~e~~~l~~el~~~~~~~~~l~~el  492 (720)
                      ..+...+.+-|.........|+.++
T Consensus       577 ~~elkk~idaL~alrrhke~LE~e~  601 (1195)
T KOG4643|consen  577 HNELKKYIDALNALRRHKEKLEEEI  601 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666664

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.52  E-value=0.48  Score=48.74  Aligned_cols=44  Identities=14%  Similarity=0.225  Sum_probs=35.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         456 NYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMS  499 (720)
Q Consensus       456 n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~  499 (720)
                      .+++..+.+.++..+++.|.+++....+++.+++.++..+++..
T Consensus       126 ~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        126 KVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566777899999999999999999999999998888743

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.43  E-value=4.9  Score=38.99  Aligned_cols=96  Identities=21%  Similarity=0.342  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTE  491 (720)
Q Consensus       412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~e  491 (720)
                      ++.......++..|+..+..|..+.+.+.+.+.++..++++-    +.....++.+++.++.|-++|......+..+...
T Consensus        27 e~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~----~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ek  102 (143)
T PF12718_consen   27 EQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES----EKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEK  102 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444455666677777777777777777766666653    2333456689999999999999999999999888


Q ss_pred             HHHHHHHHhHHHHHHHHHHH
Q psy5718         492 LQQIKDMSNHQKKRINEMLT  511 (720)
Q Consensus       492 l~~l~~~~~~~~kr~~e~~~  511 (720)
                      |.+..-...|--+++..+-.
T Consensus       103 l~e~d~~ae~~eRkv~~le~  122 (143)
T PF12718_consen  103 LREADVKAEHFERKVKALEQ  122 (143)
T ss_pred             HHHHHHHhHHHHHHHHHHHh
Confidence            88888887777777666544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0933|consensus

Probab=94.34  E-value=18  Score=44.74  Aligned_cols=143  Identities=15%  Similarity=0.173  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----------------------------HHHHhhhhhhhHH
Q psy5718         413 ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL-----------------------------EELAVNYDQKSQE  463 (720)
Q Consensus       413 ell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qal-----------------------------eel~~n~d~~~~e  463 (720)
                      ..+........++...+.....+.++.+++++++.++-                             .....+.+.-...
T Consensus       251 ~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k  330 (1174)
T KOG0933|consen  251 HEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEK  330 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            33344444556666667777777777777777766621                             1122222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhh
Q psy5718         464 VETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEE  543 (720)
Q Consensus       464 ~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~  543 (720)
                      ++...+.+..++.-|..+...++..+..++.+++..+...+=+++-    =+++.    .+-.+ ... .-+-.+-++.+
T Consensus       331 ~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~----e~~~e----slt~G-~Ss-~~~~e~~l~~q  400 (1174)
T KOG0933|consen  331 LEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKA----EELVE----SLTAG-LSS-NEDEEKTLEDQ  400 (1174)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH----HHHHH----HHhcc-ccc-CccchhhHHHH
Confidence            3344444444444444444444444444444444433333222110    01111    11111 100 11124568899


Q ss_pred             hHHHHHHHhhhhhhHhhHhhhh
Q psy5718         544 FTVARLYISKMKWRNGETVKED  565 (720)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~  565 (720)
                      .-.|+.-+|.+.++.|..--+-
T Consensus       401 l~~aK~~~~~~~t~~k~a~~k~  422 (1174)
T KOG0933|consen  401 LRDAKITLSEASTEIKQAKLKL  422 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998765443

>KOG0980|consensus

Probab=94.29  E-value=17  Score=44.30  Aligned_cols=23  Identities=22%  Similarity=0.245  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         279 RREQARKDLKGLEDTVTKELQTL  301 (720)
Q Consensus       279 ~~~~~~~~Lk~ei~~Lk~EL~~l  301 (720)
                      ..+..+..+..+++.++..+...
T Consensus       330 ~~~~~~~~~~~e~~~~~~~l~~~  352 (980)
T KOG0980|consen  330 PRELQIEQLSREVAQLKAQLENL  352 (980)
T ss_pred             hhhHHHHHHHHHHHHHhhhhhhH
Confidence            44455577777777777777655

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.27  E-value=14  Score=43.14  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=12.5

Q ss_pred             HHhHHHHHhhhhHHHHHHHHHH
Q psy5718         334 QRQKISFLENNLDQLTKVHKQL  355 (720)
Q Consensus       334 ~~qki~~le~~Le~L~~~~~qL  355 (720)
                      ....+..++.+++.+.+.....
T Consensus       260 l~~~~~~~~~~l~~~~~~~~~~  281 (562)
T PHA02562        260 LNTAAAKIKSKIEQFQKVIKMY  281 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            4445555666666666555544

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=94.15  E-value=2  Score=47.92  Aligned_cols=112  Identities=20%  Similarity=0.365  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTE  491 (720)
Q Consensus       412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~e  491 (720)
                      +..+..++..+++++.++.+--+...+-+.++   .+-|+.+-..|.+...++.+.+.++.+.+..+++++..++.+..+
T Consensus       233 ~~~~~~~~~~L~kl~~~i~~~lekI~sREk~i---N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Isee  309 (359)
T PF10498_consen  233 ESALPETKSQLDKLQQDISKTLEKIESREKYI---NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEE  309 (359)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            44445555555566666655555555544444   335667777788888888888888888888888888888888888


Q ss_pred             HHHHHHHHhHH---------HHHHHHHHHHHHHHHhHHhhhhcC
Q psy5718         492 LQQIKDMSNHQ---------KKRINEMLTNLLKDLCEIGLVIGS  526 (720)
Q Consensus       492 l~~l~~~~~~~---------~kr~~e~~~~l~~dl~e~~~~~~~  526 (720)
                      |++.|......         --+|...++.|=.++.+|..-||-
T Consensus       310 Le~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGV  353 (359)
T PF10498_consen  310 LEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGV  353 (359)
T ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhhe
Confidence            88877654333         447889999999999999888874

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG0976|consensus

Probab=94.02  E-value=18  Score=43.59  Aligned_cols=59  Identities=20%  Similarity=0.269  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5718         424 QLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQ  482 (720)
Q Consensus       424 ~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~  482 (720)
                      .+..+++.+-+|+...+-...+..+.|.+--..-|++++++-...---+.+.++..+++
T Consensus       180 ~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLs  238 (1265)
T KOG0976|consen  180 EFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLS  238 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555665555555666666666444557788776555444445555554444

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=93.88  E-value=8  Score=42.16  Aligned_cols=167  Identities=23%  Similarity=0.289  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhh
Q psy5718         385 TARRDYEQLQGEMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKS  461 (720)
Q Consensus       385 e~~~l~~ql~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~  461 (720)
                      .+..-.+.-+.|..+..--+++|+.|+   .+.+..+..+...+..-+.++.+||.-.+-.+.++.              
T Consensus        89 ~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~--------------  154 (401)
T PF06785_consen   89 KIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQ--------------  154 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHH--------------
Confidence            333333444556777777788888888   778889999999998888999888877666555533              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHH---HHHHHHHHHHH-HhHHhhhhcCCCcccccCCc
Q psy5718         462 QEVETKNKEFETLTEELTLKQTTLNTTSTELQQ-IKDMSNHQKKR---INEMLTNLLKD-LCEIGLVIGSEGDMKVTSDG  536 (720)
Q Consensus       462 ~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~-l~~~~~~~~kr---~~e~~~~l~~d-l~e~~~~~~~~~~~~~~~~~  536 (720)
                      ++..+|..|.+.|.-||++..+.-..|..|.+. +-+..+--+||   |.. |.+=..| ++||...+....+.+-..+.
T Consensus       155 ~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~-LEsKVqDLm~EirnLLQle~~~~e~~p~  233 (401)
T PF06785_consen  155 QECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGK-LESKVQDLMYEIRNLLQLESDMKESMPS  233 (401)
T ss_pred             HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence            445556666667777766665555555544432 22223333444   444 3345667 48888888665222211111


Q ss_pred             cccchhhhHHHHHHHhhhhhhHhhHhhhhcccccc
Q psy5718         537 AGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLA  571 (720)
Q Consensus       537 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  571 (720)
                           ++-++++--...|-||.|..|-+....+..
T Consensus       234 -----~~~~~s~~v~~ql~selkkivf~~enie~A  263 (401)
T PF06785_consen  234 -----TPSPSSQDVPKQLVSELKKIVFKVENIEAA  263 (401)
T ss_pred             -----CCcchhhhhHHHHHHHHHHHHHHHhhHHHH
Confidence                 111445544478889999999999888833

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=93.86  E-value=11  Score=40.63  Aligned_cols=85  Identities=19%  Similarity=0.329  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5718         421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSN  500 (720)
Q Consensus       421 ~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~  500 (720)
                      ....+..++..|-.+...-.+++.+..+...++-..-|.-..++.+..+.+..+.++..+..+.+..+...+..|+.-..
T Consensus       173 ~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~  252 (294)
T COG1340         173 KAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEK  252 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777888888888888888888888888888888888888888888888888888888888888888887776544


Q ss_pred             HHHHH
Q psy5718         501 HQKKR  505 (720)
Q Consensus       501 ~~~kr  505 (720)
                      .-+.|
T Consensus       253 ~~~~~  257 (294)
T COG1340         253 AAKRR  257 (294)
T ss_pred             HHHHH
Confidence            43333

>KOG0994|consensus

Probab=93.82  E-value=12  Score=46.86  Aligned_cols=71  Identities=20%  Similarity=0.281  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5718         412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQ  482 (720)
Q Consensus       412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~  482 (720)
                      ++++...-......|.+..+|+.|.+.+-.+-.+.++-|.+|.-.|+.+.+.++.+.+++..|..++.+..
T Consensus      1674 ~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1674 DRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence            33444444444566777778888888888888888888999999999999998888888888877765543

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.77  E-value=12  Score=40.68  Aligned_cols=121  Identities=26%  Similarity=0.410  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy5718         376 TMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELIT-------TARRDYEQLQGEMTRLTQENESAKEEVKEVLQ  448 (720)
Q Consensus       376 ~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~-------~~~~~~e~lq~el~~lq~e~~~~keevke~~q  448 (720)
                      -.++.|.+++   ++.+|..|.++...+.....++-..|+.       .+......|+.+|.+-.+++..-.++|--++.
T Consensus       165 Lq~Klk~LEe---EN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls  241 (306)
T PF04849_consen  165 LQEKLKSLEE---ENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS  241 (306)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445554443   3344444444444333333333333333       33333344455555555555555555555444


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5718         449 ALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL  513 (720)
Q Consensus       449 aleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l  513 (720)
                      .+..+...       +.....|++.|..-|......-..|..||..|++       |.+|++..|
T Consensus       242 qivdlQ~r-------~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqd-------kY~E~~~mL  292 (306)
T PF04849_consen  242 QIVDLQQR-------CKQLAAENEELQQHLQASKESQRQLQAELQELQD-------KYAECMAML  292 (306)
T ss_pred             HHHHHHHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence            44444333       3333444555555555545555555666655554       555555444

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=93.71  E-value=18  Score=42.31  Aligned_cols=17  Identities=6%  Similarity=-0.197  Sum_probs=7.1

Q ss_pred             hccCCccccCc-ccccCC
Q psy5718         209 INKSLSADGAG-KLEEEF  225 (720)
Q Consensus       209 INkSL~aLg~V-aL~~~~  225 (720)
                      ++.+...+.++ .++++.
T Consensus       123 ~g~~~~~f~~~v~l~q~~  140 (562)
T PHA02562        123 LGMNYKSFKQIVVLGTAG  140 (562)
T ss_pred             HCCCHHHHhHHheeccCc
Confidence            33333444444 444443

>PRK01156 chromosome segregation protein; Provisional

Probab=93.65  E-value=25  Score=43.82  Aligned_cols=33  Identities=12%  Similarity=0.348  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy5718         423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAV  455 (720)
Q Consensus       423 e~lq~el~~lq~e~~~~keevke~~qaleel~~  455 (720)
                      +++..++..|+.+....+.++.++..++.+|..
T Consensus       412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~  444 (895)
T PRK01156        412 NEINVKLQDISSKVSSLNQRIRALRENLDELSR  444 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444445555555555555554444444443

>KOG4674|consensus

Probab=93.62  E-value=34  Score=45.31  Aligned_cols=27  Identities=15%  Similarity=0.095  Sum_probs=16.7

Q ss_pred             hhhhHHHHHHHhhhhhhHhhHhhhhcc
Q psy5718         541 EEEFTVARLYISKMKWRNGETVKEDEQ  567 (720)
Q Consensus       541 e~~~~~~~~~~~~~~~~~~~~~~~~~~  567 (720)
                      =.+.+.++=-|.+|..++..|=++-+.
T Consensus       857 ~~~l~~~~~~~~~le~k~~eL~k~l~~  883 (1822)
T KOG4674|consen  857 LTSLDSVSTNIAKLEIKLSELEKRLKS  883 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666666666666665544

>KOG0994|consensus

Probab=93.60  E-value=26  Score=43.98  Aligned_cols=66  Identities=24%  Similarity=0.320  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy5718         412 KELITTARRDYEQLQGEMTRLTQENESA-------KEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEE  477 (720)
Q Consensus       412 eell~~~~~~~e~lq~el~~lq~e~~~~-------keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~e  477 (720)
                      +..+..+.++.+..|+.|.+++++..++       -..+.++...+++|+.+|.|.+.+.+...+......++
T Consensus      1583 ~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~ 1655 (1758)
T KOG0994|consen 1583 QDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQ 1655 (1758)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            4444445555555555555555555544       45667888888888899998888877666555544444

>KOG4302|consensus

Probab=93.56  E-value=21  Score=42.75  Aligned_cols=132  Identities=19%  Similarity=0.252  Sum_probs=93.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhHH
Q psy5718         438 SAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLK---------------QTTLNTTSTELQQIKDMSNHQ  502 (720)
Q Consensus       438 ~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~---------------~~~~~~l~~el~~l~~~~~~~  502 (720)
                      .+++....+...|+.|-..|+++-.+..+...+++.|++++...               ...++.++..|..|++.....
T Consensus       100 tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~R  179 (660)
T KOG4302|consen  100 TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDR  179 (660)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            67888899999999999999999999999999999999999866               388999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhcCCC-ccc-ccCCccc---cchhhhHHHHHH--HhhhhhhHhhHhhhhcccc
Q psy5718         503 KKRINEMLTNLLKDLCEIGLVIGSEG-DMK-VTSDGAG---KLEEEFTVARLY--ISKMKWRNGETVKEDEQVN  569 (720)
Q Consensus       503 ~kr~~e~~~~l~~dl~e~~~~~~~~~-~~~-~~~~~~~---~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  569 (720)
                      .+.+-++...+....+.+|.-...-. ++. ...+..|   ..=-.-|.+||-  +-+|+.+.+.-.++++.|-
T Consensus       180 lekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~  253 (660)
T KOG4302|consen  180 LEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLR  253 (660)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887766666555444444433110 111 0111112   111123556654  5667777777777765543

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.51  E-value=1  Score=45.74  Aligned_cols=38  Identities=32%  Similarity=0.432  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5718         463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSN  500 (720)
Q Consensus       463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~  500 (720)
                      ++.++.+-++.+.+|+..++-.++.++..+..|++-..
T Consensus       138 ~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~  175 (194)
T PF08614_consen  138 ELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR  175 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555554443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=93.40  E-value=18  Score=41.34  Aligned_cols=39  Identities=13%  Similarity=0.181  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5718         479 TLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDL  517 (720)
Q Consensus       479 ~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl  517 (720)
                      .++...++-+-.+.+.|......++.-+.....+|.|-+
T Consensus       378 e~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~  416 (622)
T COG5185         378 EKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTL  416 (622)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            334444444444445555555555555555555554443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.37  E-value=12  Score=39.40  Aligned_cols=127  Identities=19%  Similarity=0.335  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Q psy5718         384 TTARRDYEQLQGEMTRLTQENESAKEEV---KELI--TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD  458 (720)
Q Consensus       384 ee~~~l~~ql~~Ei~~~~q~~ekLkeq~---eell--~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d  458 (720)
                      +.+...++.++.++-+....+.++.+++   ++.+  .+..+.|..|+.++..++++..++.+++.++.-..+.+.    
T Consensus        48 ~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~----  123 (239)
T COG1579          48 EALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE----  123 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            3334444445555555555555555555   2222  223445556666666666666666666666555544433    


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Q psy5718         459 QKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEI  520 (720)
Q Consensus       459 ~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~  520 (720)
                         .+++.++..+..+...+.   ..-.+++.++..+.+.-......++++-.-|=.+|..+
T Consensus       124 ---~~i~~l~~~~~~~e~~~~---e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~  179 (239)
T COG1579         124 ---KEIEDLKERLERLEKNLA---EAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSE  179 (239)
T ss_pred             ---HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence               333444444444444332   23344555666666643333333366666665665433

>KOG0971|consensus

Probab=93.28  E-value=26  Score=42.96  Aligned_cols=37  Identities=24%  Similarity=0.500  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy5718         396 EMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRL  432 (720)
Q Consensus       396 Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~l  432 (720)
                      +..++.+.+.+||+.+   +++.++...+..+++.++-+.
T Consensus       369 qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k  408 (1243)
T KOG0971|consen  369 QFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKK  408 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            4556666666777666   555555555555554444433

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.24  E-value=6.5  Score=43.06  Aligned_cols=87  Identities=21%  Similarity=0.291  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         408 KEEVKELITTARRDYEQLQGEMTRLTQENESA----KEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQT  483 (720)
Q Consensus       408 keq~eell~~~~~~~e~lq~el~~lq~e~~~~----keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~  483 (720)
                      .+.+.+++...+..+..|+.++..|++..+..    -++.+.+..+|.++.       .+++.++++++.+..++..+..
T Consensus       167 ~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~-------~ei~~~~~~l~e~~~~l~~l~~  239 (312)
T smart00787      167 LELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLL-------QEIMIKVKKLEELEEELQELES  239 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            33347777777777777777777776655443    234444444444443       3344444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHhH
Q psy5718         484 TLNTTSTELQQIKDMSNH  501 (720)
Q Consensus       484 ~~~~l~~el~~l~~~~~~  501 (720)
                      .+.+...+.+.++...+.
T Consensus       240 ~I~~~~~~k~e~~~~I~~  257 (312)
T smart00787      240 KIEDLTNKKSELNTEIAE  257 (312)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444444444333

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.19  E-value=3.4  Score=38.95  Aligned_cols=98  Identities=28%  Similarity=0.429  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhH
Q psy5718         383 ITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQ  462 (720)
Q Consensus       383 ~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~  462 (720)
                      .+.+...+++++.|+......+.++           ....+.+..|+.+|-.+++..+....++. .|          ..
T Consensus        18 ve~L~s~lr~~E~E~~~l~~el~~l-----------~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~-~L----------~~   75 (120)
T PF12325_consen   18 VERLQSQLRRLEGELASLQEELARL-----------EAERDELREEIVKLMEENEELRALKKEVE-EL----------EQ   75 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----------HH
Confidence            3444444455555555554444444           33345667777788777776665555533 22          24


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5718         463 EVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQ  502 (720)
Q Consensus       463 e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~  502 (720)
                      +++++...++++-+-+.+|...+..|+..+.++|++--.|
T Consensus        76 el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Q  115 (120)
T PF12325_consen   76 ELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQ  115 (120)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            6777888888888888888889999999999888886554

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG4360|consensus

Probab=92.99  E-value=9.7  Score=43.74  Aligned_cols=84  Identities=17%  Similarity=0.231  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         413 ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTEL  492 (720)
Q Consensus       413 ell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el  492 (720)
                      +++.+...++-.+|.++.+|-..+..++.+.+.+-..-|++..-.-..++.=++...|...+.+.-++.+..+...+.||
T Consensus       219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeEL  298 (596)
T KOG4360|consen  219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEEL  298 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444555555555555555555554444444443333333333333444444444444455555555555666


Q ss_pred             HHHH
Q psy5718         493 QQIK  496 (720)
Q Consensus       493 ~~l~  496 (720)
                      +.|+
T Consensus       299 k~lr  302 (596)
T KOG4360|consen  299 KCLR  302 (596)
T ss_pred             Hhhc
Confidence            5554

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=92.94  E-value=23  Score=42.27  Aligned_cols=86  Identities=19%  Similarity=0.242  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy5718         391 EQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKE  470 (720)
Q Consensus       391 ~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e  470 (720)
                      .+|+.-+..-.+....|..|.+....-...+|+.|.........+...--++++++.+...++......|.+....+.++
T Consensus       397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e  476 (594)
T PF05667_consen  397 AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE  476 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555555555555545555555544444444444444555555555555554444444444444444


Q ss_pred             HHHHHH
Q psy5718         471 FETLTE  476 (720)
Q Consensus       471 ~~~l~~  476 (720)
                      ++.+..
T Consensus       477 ~e~~~k  482 (594)
T PF05667_consen  477 LEKLPK  482 (594)
T ss_pred             HHhCCC
Confidence            444433

>KOG0018|consensus

Probab=92.94  E-value=10  Score=47.16  Aligned_cols=173  Identities=17%  Similarity=0.276  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy5718         396 EMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLT  475 (720)
Q Consensus       396 Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~  475 (720)
                      ++.++.+.-++|.+++.++-. .+......+..+..|..+...++.++..+              ...++....|++.+.
T Consensus       653 ~~~~L~~~k~rl~eel~ei~~-~~~e~~~v~~~i~~le~~~~~~~~~~~~~--------------k~~l~~~~~El~~~~  717 (1141)
T KOG0018|consen  653 EVDQLKEKKERLLEELKEIQK-RRKEVSSVESKIHGLEMRLKYSKLDLEQL--------------KRSLEQNELELQRTE  717 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence            677777888888888877766 45566666777777776666665554443              344556677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-HHhhhhcCCCcccccCCccccchhhhHHHHHHHhhh
Q psy5718         476 EELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLC-EIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKM  554 (720)
Q Consensus       476 ~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~-e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  554 (720)
                      .++....-.+..+..+++.....-..-.+|+.++..+..+|.| .||..|+.-   +   +..+  -++|+--|+=+++-
T Consensus       718 ~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Y---e---e~~~--~~~~a~k~~ef~~q  789 (1141)
T KOG0018|consen  718 SEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREY---E---EREL--QQEFAKKRLEFENQ  789 (1141)
T ss_pred             HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehH---H---HHHH--HHHHHHHHHHHHHH
Confidence            7777777778888888888888888888899999999999876 455554332   1   2222  78899889888887


Q ss_pred             hhhHhhHhhhhcccccchhHHHHhhhCCCCCCcchhh
Q psy5718         555 KWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASI  591 (720)
Q Consensus       555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (720)
                      +.-+..=+.--+|-+...-+...+..-..++..++.+
T Consensus       790 ~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~  826 (1141)
T KOG0018|consen  790 KAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGL  826 (1141)
T ss_pred             HHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhh
Confidence            7766655544444334444444444445555555555

>KOG0288|consensus

Probab=92.90  E-value=5.5  Score=44.59  Aligned_cols=113  Identities=20%  Similarity=0.173  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhH-HHHHH
Q psy5718         392 QLQGEMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQ-EVETK  467 (720)
Q Consensus       392 ql~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~-e~e~~  467 (720)
                      ++..++.+..+..+.+-.|.   +-...+....+.....+|++||+||.-..++.--     ++.+.+|-.... ..+.+
T Consensus        17 ~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~-----~~a~~~~~t~~~~~~en~   91 (459)
T KOG0288|consen   17 DLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR-----EEATEKTLTVDVLIAENL   91 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence            34445555555555665555   3333445556666777888888888877776544     333444433322 22333


Q ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy5718         468 NKEFETLTEELTL----KQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLC  518 (720)
Q Consensus       468 ~~e~~~l~~el~~----~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~  518 (720)
                      +....+=..++.+    -.+...+|.         ..-++.||+++++.-++||+
T Consensus        92 ~~r~~~eir~~~~q~~e~~n~~~~l~---------~~~~~~r~~e~la~~~~~l~  137 (459)
T KOG0288|consen   92 RIRSLNEIRELREQKAEFENAELALR---------EMRRKMRIAERLAEALKDLG  137 (459)
T ss_pred             HHHHHHHHHHHHHhhhhhccchhhHH---------HHHHHHHHHHHHHHHhhhcc
Confidence            2222222222222    222222222         33466799999999888876

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=92.90  E-value=38  Score=43.82  Aligned_cols=61  Identities=20%  Similarity=0.266  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Q psy5718         460 KSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEI  520 (720)
Q Consensus       460 ~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~  520 (720)
                      ...++.+...+...+..++..+.+.+.....++++-......+.+++.+.++.|-..+..+
T Consensus       821 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l  881 (1201)
T PF12128_consen  821 LEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL  881 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3444666677777777777777777777777777777777777777777777654444444

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=92.85  E-value=15  Score=38.99  Aligned_cols=128  Identities=18%  Similarity=0.336  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q psy5718         396 EMTRLTQENESAKEEVKELITT----ARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEF  471 (720)
Q Consensus       396 Ei~~~~q~~ekLkeq~eell~~----~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~  471 (720)
                      ++.+.....+.++.++++.+..    .......+..++..++.++...++.+..+...++......+...+.++.....+
T Consensus        28 ~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l  107 (302)
T PF10186_consen   28 ELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL  107 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555555555444442    222223333444444444444444444444444433333333333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhh
Q psy5718         472 ETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLV  523 (720)
Q Consensus       472 ~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~  523 (720)
                      ................+..++...+.........+...-..++++|+.|=.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI  159 (302)
T PF10186_consen  108 SASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPI  159 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            3222222222233333334444444443333444444445566677776666

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG0964|consensus

Probab=92.53  E-value=34  Score=42.38  Aligned_cols=138  Identities=15%  Similarity=0.215  Sum_probs=86.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHH
Q psy5718         374 RATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKE------------------------------LITTARRDYE  423 (720)
Q Consensus       374 ~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~ee------------------------------ll~~~~~~~e  423 (720)
                      ....++.+.+.++...|..+.++-++....+..|.++..+                              .+.++.....
T Consensus       335 ~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~  414 (1200)
T KOG0964|consen  335 DKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQEN  414 (1200)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            3344555555566666666655555444444444443322                              2333334444


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5718         424 QLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQK  503 (720)
Q Consensus       424 ~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~  503 (720)
                      .+|.++..+..+.++..++++++...+.+.....++--.+.-.++++.+.+...-..+=.+=..|+..+..+++..+.+.
T Consensus       415 ~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~  494 (1200)
T KOG0964|consen  415 ILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAE  494 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677777777777777777777777776655555555555555666666666655565666777888888888888888


Q ss_pred             HHHHHHHH
Q psy5718         504 KRINEMLT  511 (720)
Q Consensus       504 kr~~e~~~  511 (720)
                      +++..+++
T Consensus       495 ~~L~~~~~  502 (1200)
T KOG0964|consen  495 KNLRATMN  502 (1200)
T ss_pred             HHHHHhcc
Confidence            88888776

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=92.31  E-value=28  Score=40.84  Aligned_cols=134  Identities=26%  Similarity=0.350  Sum_probs=82.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHH---HHHH
Q psy5718         374 RATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKE-EVKE---VLQA  449 (720)
Q Consensus       374 ~~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~ke-evke---~~qa  449 (720)
                      .+..++.....+...+...+..++.+....++.|+.++ +.......++......+..|+.+.....+ ++..   ....
T Consensus       197 eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~  275 (522)
T PF05701_consen  197 EAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEK  275 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhh
Confidence            34455555666666666667777777777777777777 33333344444444455555555554444 2221   1222


Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5718         450 LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE  508 (720)
Q Consensus       450 leel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e  508 (720)
                      ...+...+.....++++.+..++...+++..+...+.+|..||+..+.-.+.-+.|...
T Consensus       276 ~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~  334 (522)
T PF05701_consen  276 SSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKE  334 (522)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445556667777777888888888888888888888888887777666666543

Several sequences in this family are described as being myosin heavy chain-like.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.08  E-value=2.5  Score=46.26  Aligned_cols=21  Identities=5%  Similarity=0.137  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHH
Q psy5718         618 ERLYQQLDEKDEEINQQSQYA  638 (720)
Q Consensus       618 ~~~~~q~~~lrdei~~k~~~~  638 (720)
                      ..++.-|..+=+++.+-...+
T Consensus       236 ~~Fd~am~~~L~~~~q~~~~~  256 (314)
T PF04111_consen  236 RKFDKAMVAFLDCLQQLAEFV  256 (314)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHH
Confidence            456666666666666655555

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0995|consensus

Probab=91.89  E-value=31  Score=40.42  Aligned_cols=184  Identities=18%  Similarity=0.154  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy5718         387 RRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVET  466 (720)
Q Consensus       387 ~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~  466 (720)
                      .+.+..|++.++.+...+..++.-.    ......++.++.++..-.+|+++.+.++.++-..++..    +=...+|+.
T Consensus       265 re~~~~L~~D~nK~~~y~~~~~~k~----~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q----~iS~~dve~  336 (581)
T KOG0995|consen  265 REKKARLQDDVNKFQAYVSQMKSKK----QHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ----GISGEDVER  336 (581)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHHH
Confidence            4445567777776666655544333    33344455566666666666666666666655444432    334556777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHhHHhhhhcCCCcccccCCccccchhh
Q psy5718         467 KNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM---LTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEE  543 (720)
Q Consensus       467 ~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~---~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~  543 (720)
                      -+.|.+.|..+|......+..+..++=.++.....+.+=+...   +++|.+-|+=.+...+-+  ++..|      +.-
T Consensus       337 mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n--~~~~p------e~~  408 (581)
T KOG0995|consen  337 MNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKN--LERNP------ERA  408 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCcCC------ccC
Confidence            7888888888888888777777777766665444433332222   233333332221221111  11001      222


Q ss_pred             hHHHHHHHhhhhhhHhhHhhhhcccccchhHHHHhhhCCCCCCcchhh
Q psy5718         544 FTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASI  591 (720)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (720)
                      ++..+=|-+..+-=++.++.     +.++.+...++++-.||+.++.+
T Consensus       409 ~~~~~d~k~~V~~~l~el~~-----ei~~~~~~~~~~~~tLq~~~~~~  451 (581)
T KOG0995|consen  409 ATNGVDLKSYVKPLLKELLD-----EISEELHEAENELETLQEHFSNK  451 (581)
T ss_pred             ccccccchhHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45455555555554554443     45677777888888888888776

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.86  E-value=12  Score=35.63  Aligned_cols=98  Identities=18%  Similarity=0.291  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5718         423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQ  502 (720)
Q Consensus       423 e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~  502 (720)
                      +.+...+..++.+.+.--..+++.....+.--+......+.+...+.++..+..++..+.+...+....|...+.....+
T Consensus        20 ~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q   99 (132)
T PF07926_consen   20 EDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ   99 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            33344444445555555555555555555544555556677777777888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHhHH
Q psy5718         503 KKRINEMLTNLLKDLCEI  520 (720)
Q Consensus       503 ~kr~~e~~~~l~~dl~e~  520 (720)
                      |+.+..=+..+-+-+-|+
T Consensus       100 k~~le~e~~~~~~r~~dL  117 (132)
T PF07926_consen  100 KEQLEKELSELEQRIEDL  117 (132)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            877776555554444443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.80  E-value=11  Score=45.79  Aligned_cols=14  Identities=43%  Similarity=0.643  Sum_probs=10.1

Q ss_pred             HhHHHHHHHHHHHH
Q psy5718         499 SNHQKKRINEMLTN  512 (720)
Q Consensus       499 ~~~~~kr~~e~~~~  512 (720)
                      +..|+++|.++|..
T Consensus       683 ~~~Q~~~I~~iL~~  696 (717)
T PF10168_consen  683 SESQKRTIKEILKQ  696 (717)
T ss_pred             CHHHHHHHHHHHHH
Confidence            56788888877654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG4643|consensus

Probab=91.69  E-value=43  Score=41.68  Aligned_cols=29  Identities=10%  Similarity=0.132  Sum_probs=19.6

Q ss_pred             hhccccCCcccHHHHHhHHHHHHHhcccc
Q psy5718         243 VARCTSMESSQAEEHKKAIEYEKELGETR  271 (720)
Q Consensus       243 mI~~iSPs~~~~~ETlsTL~fa~rak~Ik  271 (720)
                      +-+.-+|...-+..|+.-|.|-..++.+.
T Consensus        54 g~avqcp~kelfi~riq~ldlete~a~~~   82 (1195)
T KOG4643|consen   54 GSAVQCPTKELFIQRIQILDLETEMAQMR   82 (1195)
T ss_pred             HhhhcCCcHHHHHHHHHhhhhHHHHHHHH
Confidence            33334788888888888888766655544

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=91.52  E-value=2.8  Score=48.99  Aligned_cols=81  Identities=23%  Similarity=0.410  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         419 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQ---KSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQI  495 (720)
Q Consensus       419 ~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~---~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l  495 (720)
                      ++..++|+.++..|+.+++..+.++-.+...|+.+..+++.   +..+++.+..++..|..+|.++......|..+|+++
T Consensus       428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l  507 (652)
T COG2433         428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL  507 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555555555555555555555555555555555543   345688889999999999999999999999999999


Q ss_pred             HHHH
Q psy5718         496 KDMS  499 (720)
Q Consensus       496 ~~~~  499 (720)
                      +.+.
T Consensus       508 ~k~~  511 (652)
T COG2433         508 RKMR  511 (652)
T ss_pred             HHHH
Confidence            9663

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=91.51  E-value=14  Score=35.80  Aligned_cols=86  Identities=24%  Similarity=0.325  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         409 EEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTT  488 (720)
Q Consensus       409 eq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l  488 (720)
                      .-++..+.+..++++-.|.....+..+++.++.++..+...++.++.+..+-..++...+.+.+.|..+|..++..+..|
T Consensus        20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL   99 (140)
T PF10473_consen   20 DSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL   99 (140)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33466777888888888888888888999999998888888888888888888888888888888888888776666655


Q ss_pred             HHHHHH
Q psy5718         489 STELQQ  494 (720)
Q Consensus       489 ~~el~~  494 (720)
                      ++-...
T Consensus       100 E~~~~~  105 (140)
T PF10473_consen  100 ESLNSS  105 (140)
T ss_pred             HHHhHH
Confidence            544433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.46  E-value=8  Score=38.72  Aligned_cols=57  Identities=25%  Similarity=0.351  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         441 EEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD  497 (720)
Q Consensus       441 eevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~  497 (720)
                      +..+.+...+..+...|....+++.+..++..+...+...+...+..+...++++.+
T Consensus       123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  179 (191)
T PF04156_consen  123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEE  179 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333444444444444444333333333333333333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=91.32  E-value=30  Score=39.26  Aligned_cols=31  Identities=19%  Similarity=0.219  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718         283 ARKDLKGLEDTVTKELQTLHNLRKLFVQDLQ  313 (720)
Q Consensus       283 ~~~~Lk~ei~~Lk~EL~~l~nlrk~~~qdl~  313 (720)
                      ....|..+|..++.++..+...+..+..++.
T Consensus        60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~   90 (420)
T COG4942          60 QRAKLEKQLKSLETEIASLEAQLIETADDLK   90 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3366666666666666666555544444443

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=91.14  E-value=20  Score=36.95  Aligned_cols=155  Identities=19%  Similarity=0.298  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy5718         390 YEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNK  469 (720)
Q Consensus       390 ~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~  469 (720)
                      +..+.....++...++.+..-+.+++....+..+....++.++..+.+.+-.++..+..+|-+|-..|..-...+++..+
T Consensus        32 ~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~  111 (207)
T PF05010_consen   32 YEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKK  111 (207)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            33444455566666666666667777777778888888999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhhhHHHHH
Q psy5718         470 EFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARL  549 (720)
Q Consensus       470 e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  549 (720)
                      -=+.|...+..-...+...+..++.|+.....+-.+..+          ||..+...+             ..|.+..+.
T Consensus       112 NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANe----------ei~~v~~~~-------------~~e~~aLqa  168 (207)
T PF05010_consen  112 NEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANE----------EIAQVRSKH-------------QAELLALQA  168 (207)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHh-------------HHHHHHHHH
Confidence            888888888887788887777777777666544443333          444444444             556777777


Q ss_pred             HHhhhhhhHhhHhhhhcc
Q psy5718         550 YISKMKWRNGETVKEDEQ  567 (720)
Q Consensus       550 ~~~~~~~~~~~~~~~~~~  567 (720)
                      =+.|....+.||-....|
T Consensus       169 ~lkk~e~~~~SLe~~LeQ  186 (207)
T PF05010_consen  169 SLKKEEMKVQSLEESLEQ  186 (207)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777777777655544

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=91.10  E-value=24  Score=37.63  Aligned_cols=98  Identities=14%  Similarity=0.245  Sum_probs=57.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy5718         375 ATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEV----KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL  450 (720)
Q Consensus       375 ~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~----eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qal  450 (720)
                      ++...++.+   ...|..+..-+.-...-..+..+++    .+--.........||.++..+..+...+.++|.-+..= 
T Consensus        35 st~~~Vr~l---Lqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TY-  110 (258)
T PF15397_consen   35 STALKVRKL---LQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTY-  110 (258)
T ss_pred             hHHHHHHHH---HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            344444443   3334444444444444444444444    33334445555677888888888888888777664333 


Q ss_pred             HHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy5718         451 EELAVNYDQKSQEVETKNKEFETLTEEL  478 (720)
Q Consensus       451 eel~~n~d~~~~e~e~~~~e~~~l~~el  478 (720)
                        .-..|=-++-.+.++...++++.++.
T Consensus       111 --kD~EYPvK~vqIa~L~rqlq~lk~~q  136 (258)
T PF15397_consen  111 --KDHEYPVKAVQIANLVRQLQQLKDSQ  136 (258)
T ss_pred             --hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence              22567777777777888887777763

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=90.97  E-value=20  Score=36.58  Aligned_cols=40  Identities=20%  Similarity=0.345  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhh
Q psy5718         422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKS  461 (720)
Q Consensus       422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~  461 (720)
                      .++|+.++..+....+.+...+.++...++-...+|....
T Consensus       120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql  159 (194)
T PF15619_consen  120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQL  159 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4788999999999999999999998888877666665433

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=90.94  E-value=28  Score=38.21  Aligned_cols=69  Identities=13%  Similarity=0.217  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccch
Q psy5718         464 VETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLE  541 (720)
Q Consensus       464 ~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e  541 (720)
                      =+.+=.+++.+.....++...+.++-.|.+.+..--...|.++.-+ |      .|+..++|+. +-+ ..|+.|.+.
T Consensus       128 re~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RL-N------~ELn~~L~g~-~~r-ivDIDaLi~  196 (319)
T PF09789_consen  128 REDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRL-N------HELNYILNGD-ENR-IVDIDALIM  196 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHhCCC-CCC-cccHHHHHH
Confidence            3444556666777777777777777777777766666666665543 2      2456778776 544 557776543

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=90.74  E-value=3.8  Score=35.24  Aligned_cols=65  Identities=23%  Similarity=0.246  Sum_probs=49.6

Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5718         449 ALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL  513 (720)
Q Consensus       449 aleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l  513 (720)
                      -|+.|...|.+--..+..++.+++.|.++-..+...+..|..|.++|+.--+....||.-++..|
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl   69 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35556666666666677777788888888777788888888899999988888888877766554

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=90.74  E-value=12  Score=37.44  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=9.7

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5718         429 MTRLTQENESAKEEVKEVLQALEEL  453 (720)
Q Consensus       429 l~~lq~e~~~~keevke~~qaleel  453 (720)
                      ....+++..+.++..++....+.++
T Consensus       125 ~~~~~~~l~~l~~~~~~~~~e~~~l  149 (191)
T PF04156_consen  125 LKSVEERLDSLDESIKELEKEIREL  149 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG0964|consensus

Probab=90.72  E-value=24  Score=43.56  Aligned_cols=138  Identities=15%  Similarity=0.189  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5718         424 QLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQK  503 (720)
Q Consensus       424 ~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~  503 (720)
                      +.+.++..||+.++...-++.+.-|....+--+.-+..-....-..+.+.+..++.....+-..++..+.-...+-..-+
T Consensus       675 ~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~  754 (1200)
T KOG0964|consen  675 ESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIK  754 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH
Confidence            34445555555555555555555555444444333333333333444444444444444444444444444444433334


Q ss_pred             HHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhhhHHHHHHHhhhhhhHhhHhhhhcccc
Q psy5718         504 KRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVN  569 (720)
Q Consensus       504 kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  569 (720)
                      -+++.+....--==+|+|+.+-+.    ..+    ...|...-.+.=|++|.-+...+..+...++
T Consensus       755 ~~l~~~~~~~~~~e~el~sel~sq----Lt~----ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~  812 (1200)
T KOG0964|consen  755 TSLHKLESQSNYFESELGSELFSQ----LTP----EELERLSKLNKEINKLSVKLRALREERIDIE  812 (1200)
T ss_pred             HHHHHHHHHHHhHHHHHhHHHHhh----cCH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            444443333333335555555333    111    2245566677788888888887777665544

>KOG4593|consensus

Probab=90.67  E-value=44  Score=40.01  Aligned_cols=55  Identities=25%  Similarity=0.357  Sum_probs=27.1

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5718         450 LEELAVNYDQKSQEVETKNKEFETLTEELT---LKQTTLNTTSTELQQIKDMSNHQKK  504 (720)
Q Consensus       450 leel~~n~d~~~~e~e~~~~e~~~l~~el~---~~~~~~~~l~~el~~l~~~~~~~~k  504 (720)
                      |+.+..+.+..-|+++...+.+..+.++++   +......-|+.|++.|+..-.+..+
T Consensus       239 le~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~  296 (716)
T KOG4593|consen  239 LEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEK  296 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555555555555   3333444444455544444444333

>KOG0980|consensus

Probab=90.66  E-value=50  Score=40.58  Aligned_cols=59  Identities=22%  Similarity=0.298  Sum_probs=23.8

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         433 TQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTE  491 (720)
Q Consensus       433 q~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~e  491 (720)
                      +.+.+..|+-.-++.+.=-+|..+||+..++++--..-+..+.++..++.-.+..++.+
T Consensus       423 e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~  481 (980)
T KOG0980|consen  423 ENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRA  481 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444454444444333333333333333333333333333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=90.43  E-value=44  Score=39.57  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         472 ETLTEELTLKQTTLNTTSTELQQIKD  497 (720)
Q Consensus       472 ~~l~~el~~~~~~~~~l~~el~~l~~  497 (720)
                      ..+.+-+.+....+..|..|++.++.
T Consensus       309 ~~l~~~l~~~~~~~~~l~~e~~~v~~  334 (560)
T PF06160_consen  309 KELYEYLEHAKEQNKELKEELERVSQ  334 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK12704 phosphodiesterase; Provisional

Probab=90.40  E-value=31  Score=40.47  Aligned_cols=6  Identities=50%  Similarity=0.827  Sum_probs=2.4

Q ss_pred             hhhcCC
Q psy5718         522 LVIGSE  527 (720)
Q Consensus       522 ~~~~~~  527 (720)
                      -+||-.
T Consensus       224 riigre  229 (520)
T PRK12704        224 RIIGRE  229 (520)
T ss_pred             ceeCCC
Confidence            334443

>PRK09039 hypothetical protein; Validated

Probab=90.40  E-value=28  Score=38.65  Aligned_cols=63  Identities=6%  Similarity=0.135  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy5718         412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETL  474 (720)
Q Consensus       412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l  474 (720)
                      ...+...+..|.+.+.++..|+.+.++++..+-.+..+|.............++++..+++..
T Consensus       122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666667777777788888888887777777777776666655555555555444444

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=90.20  E-value=46  Score=39.42  Aligned_cols=138  Identities=20%  Similarity=0.277  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         414 LITTARRDYEQLQGEMTRLTQENESAK---EEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTST  490 (720)
Q Consensus       414 ll~~~~~~~e~lq~el~~lq~e~~~~k---eevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~  490 (720)
                      .+..+......+..++.+++....-..   +.++.+...+..+...|+.-.+.+++...-.-.+.+++......+..++.
T Consensus       314 ~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~  393 (560)
T PF06160_consen  314 YLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEE  393 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444332222   12245555666677777777777776666666666666666666666666


Q ss_pred             HHHHHHHHHhHHH---HHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhhhHHHHHHHhhhh
Q psy5718         491 ELQQIKDMSNHQK---KRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMK  555 (720)
Q Consensus       491 el~~l~~~~~~~~---kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  555 (720)
                      +...+.+.-..-+   +++.+-+..+-.+|.+|=.-+-..    ..|.+......-|..+.=+|..+.
T Consensus       394 ~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~----nLPGlp~~y~~~~~~~~~~i~~l~  457 (560)
T PF06160_consen  394 EQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKS----NLPGLPEDYLDYFFDVSDEIEELS  457 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6666666644443   356667777888888888887654    244454445556665555444443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0946|consensus

Probab=90.08  E-value=54  Score=40.01  Aligned_cols=123  Identities=18%  Similarity=0.182  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh--
Q psy5718         381 KLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD--  458 (720)
Q Consensus       381 k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d--  458 (720)
                      |+.++.....+.|-+.|..+...++.++++..++-    -+.++++.++.....+....++++..+...|...-..-+  
T Consensus       650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~----~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~  725 (970)
T KOG0946|consen  650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQ----VENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDL  725 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhH
Confidence            44444444444444455555555555544332222    222333333333333333334443333333331111111  


Q ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5718         459 -QKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRIN  507 (720)
Q Consensus       459 -~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~  507 (720)
                       |-.+..+....++..+..|-........-+..+|+.-..+...+|+.+.
T Consensus       726 ~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~  775 (970)
T KOG0946|consen  726 LQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQR  775 (970)
T ss_pred             HhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence             2222344456677777777777777777777777766666666666655

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=90.01  E-value=54  Score=39.93  Aligned_cols=31  Identities=26%  Similarity=0.280  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q psy5718         282 QARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARI  316 (720)
Q Consensus       282 ~~~~~Lk~ei~~Lk~EL~~l~nlrk~~~qdl~~r~  316 (720)
                      ..+.+|..+|+.|+.+|+..    +..-++|+...
T Consensus       418 ~a~~rLE~dvkkLraeLq~~----Rq~E~ELRsqi  448 (697)
T PF09726_consen  418 DAISRLEADVKKLRAELQSS----RQSEQELRSQI  448 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHH
Confidence            34467888888888888776    44455555543

; GO: 0016021 integral to membrane

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=89.88  E-value=29  Score=36.72  Aligned_cols=87  Identities=21%  Similarity=0.374  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5718         421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSN  500 (720)
Q Consensus       421 ~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~  500 (720)
                      ....+..++.+++.+++..++.+.+...++.       .....+.......+.....+.+....+......+..+.....
T Consensus        71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~  143 (302)
T PF10186_consen   71 RLERLRERIERLRKRIEQKRERLEELRESLE-------QRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLA  143 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444       333333322333333444444445555566666666666666


Q ss_pred             HHHHHHHHHHHHHH
Q psy5718         501 HQKKRINEMLTNLL  514 (720)
Q Consensus       501 ~~~kr~~e~~~~l~  514 (720)
                      +.|+++...+..+.
T Consensus       144 ~~r~~l~~~l~~if  157 (302)
T PF10186_consen  144 RRRRQLIQELSEIF  157 (302)
T ss_pred             HHHHHHHHHHHHHh
Confidence            66666666555544

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=89.70  E-value=53  Score=39.36  Aligned_cols=172  Identities=15%  Similarity=0.175  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHh
Q psy5718         442 EVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIG  521 (720)
Q Consensus       442 evke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~  521 (720)
                      .++-+...+-.|......+++-++++.+++..|.....--...++.++..++.|+.-...-++.-.++...+.+||-+=+
T Consensus       588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~  667 (786)
T PF05483_consen  588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKS  667 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence            34455555667778888889999999999999999999999999999999999999988888889999999999987433


Q ss_pred             hhhcCCCcccccCCccccchhhhHHHHHHHh---hhhhhHhhHhhhhcccccchhHHHHhhhCCCCCCcchhhcccCccc
Q psy5718         522 LVIGSEGDMKVTSDGAGKLEEEFTVARLYIS---KMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGS  598 (720)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (720)
                      ..-             ..+..|+-=+|+-.-   |++-|.   =-||.+ -.+|-+.-||.-|-|    ||.++.- +.+
T Consensus       668 ~~e-------------~~L~~EveK~k~~a~EAvK~q~Et---dlrCQh-KIAeMVALMEKHK~q----YDkiVEE-kDa  725 (786)
T PF05483_consen  668 ISE-------------EELLGEVEKAKLTADEAVKLQEET---DLRCQH-KIAEMVALMEKHKHQ----YDKIVEE-KDA  725 (786)
T ss_pred             hhH-------------HHHHHHHHHHHHHHHHHHHhHHHH---HHHHHH-HHHHHHHHHHHhHHH----HHHHHHH-HHH
Confidence            221             122334333333221   222221   224544 356666667766643    4443211 111


Q ss_pred             cccccccchHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5718         599 GLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYA  638 (720)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~lrdei~~k~~~~  638 (720)
                      |..  . .+...++.-..+++|+..+-.|+.||..-...+
T Consensus       726 EL~--~-~k~KE~E~~s~k~sLE~ELs~lk~el~slK~QL  762 (786)
T PF05483_consen  726 ELG--L-YKKKEQEQSSHKASLELELSNLKNELSSLKKQL  762 (786)
T ss_pred             HHH--H-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            111  0 111112222378889988888998888766555

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG1853|consensus

Probab=89.25  E-value=32  Score=36.31  Aligned_cols=30  Identities=20%  Similarity=0.266  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5718         422 YEQLQGEMTRLTQENESAKEEVKEVLQALE  451 (720)
Q Consensus       422 ~e~lq~el~~lq~e~~~~keevke~~qale  451 (720)
                      ++.+.+++++.-++|.-++.|+.|-.-+|+
T Consensus       135 leDfeqrLnqAIErnAfLESELdEke~lle  164 (333)
T KOG1853|consen  135 LEDFEQRLNQAIERNAFLESELDEKEVLLE  164 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            344555555555555555555555444444

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=89.19  E-value=27  Score=36.89  Aligned_cols=50  Identities=22%  Similarity=0.339  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy5718         462 QEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLT  511 (720)
Q Consensus       462 ~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~  511 (720)
                      +++.+...++..|.++...+......++.++..-++....-+.+...+++
T Consensus        82 ~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~  131 (246)
T PF00769_consen   82 QELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMS  131 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666667777777777777777777777777777766666666555443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG0946|consensus

Probab=88.82  E-value=39  Score=41.10  Aligned_cols=70  Identities=23%  Similarity=0.280  Sum_probs=30.3

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Q psy5718         450 LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEI  520 (720)
Q Consensus       450 leel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~  520 (720)
                      +.++...|.+-.++.+++.....+..+.+.........+..+...+..--..-+.|+.. .+++.+.+.|=
T Consensus       808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~-~~nli~~ltEk  877 (970)
T KOG0946|consen  808 LQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKF-GNNLIKELTEK  877 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhh-hhhHHHHHhhh
Confidence            34444444444444444444444444444444433333333333333322222334333 45555555554

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=88.74  E-value=49  Score=38.79  Aligned_cols=8  Identities=63%  Similarity=1.169  Sum_probs=3.5

Q ss_pred             hhhhcCCC
Q psy5718         521 GLVIGSEG  528 (720)
Q Consensus       521 ~~~~~~~~  528 (720)
                      |-|||-.|
T Consensus       217 griigreG  224 (514)
T TIGR03319       217 GRIIGREG  224 (514)
T ss_pred             ccccCCCc
Confidence            44444443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.66  E-value=3.4  Score=41.91  Aligned_cols=87  Identities=15%  Similarity=0.250  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5718         425 LQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKK  504 (720)
Q Consensus       425 lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~k  504 (720)
                      +..++............++..+...+..+......+..-++..+-|+..|..+++....++..|+.|-..|=+-.-..+.
T Consensus       107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~  186 (194)
T PF08614_consen  107 LEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKA  186 (194)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444444444444455666677888888888888888888888888888888887777777


Q ss_pred             HHHHHHH
Q psy5718         505 RINEMLT  511 (720)
Q Consensus       505 r~~e~~~  511 (720)
                      +-++.||
T Consensus       187 ~eAe~mN  193 (194)
T PF08614_consen  187 QEAERMN  193 (194)
T ss_dssp             HHHHH--
T ss_pred             HHHHHhc
Confidence            7777665

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG1937|consensus

Probab=88.59  E-value=40  Score=38.40  Aligned_cols=142  Identities=19%  Similarity=0.305  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHhhhhhhhHHHHHHH-HHHHHHHHHHHH---
Q psy5718         407 AKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE--LAVNYDQKSQEVETKN-KEFETLTEELTL---  480 (720)
Q Consensus       407 Lkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qalee--l~~n~d~~~~e~e~~~-~e~~~l~~el~~---  480 (720)
                      +++.+=+.+......+++|+..+..++...........++.+.|.+  +...-..+..+++++. .+++.+..+|..   
T Consensus       280 lkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~e  359 (521)
T KOG1937|consen  280 LKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDE  359 (521)
T ss_pred             hHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence            3333444555556666677777777766666666666666666554  3333444555555555 445544444443   


Q ss_pred             ----HHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccC-CccccchhhhHHHH
Q psy5718         481 ----KQTTLNTTSTELQQIKDM--SNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTS-DGAGKLEEEFTVAR  548 (720)
Q Consensus       481 ----~~~~~~~l~~el~~l~~~--~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~  548 (720)
                          ...-...|..||+.+-+-  --....||.|+..|.=|-=.||--++|..-++...- ..+|++.--|.|.=
T Consensus       360 ei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtd  434 (521)
T KOG1937|consen  360 EIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTD  434 (521)
T ss_pred             HHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence                334444556666655442  123345888988888888888888887642322221 24567777777653

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=88.49  E-value=60  Score=38.47  Aligned_cols=14  Identities=14%  Similarity=0.079  Sum_probs=6.8

Q ss_pred             HHHHHHhhhhhhHh
Q psy5718         546 VARLYISKMKWRNG  559 (720)
Q Consensus       546 ~~~~~~~~~~~~~~  559 (720)
                      -||=.+.+++..+.
T Consensus       415 eAr~kL~~~~~~L~  428 (569)
T PRK04778        415 EAREKLERYRNKLH  428 (569)
T ss_pred             HHHHHHHHHHHHHH
Confidence            35555555544433

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=88.33  E-value=23  Score=33.46  Aligned_cols=46  Identities=28%  Similarity=0.346  Sum_probs=27.4

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy5718         434 QENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELT  479 (720)
Q Consensus       434 ~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~  479 (720)
                      .+...++.+++++.+....+-.=|=+|+.+|++++..++++.+-..
T Consensus        68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr  113 (120)
T PF12325_consen   68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYR  113 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555566677777777777777766543

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=88.22  E-value=38  Score=35.79  Aligned_cols=44  Identities=16%  Similarity=0.319  Sum_probs=17.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5718         461 SQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKK  504 (720)
Q Consensus       461 ~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~k  504 (720)
                      ..++.........|..++..+......++.++..+++....+.+
T Consensus        95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~  138 (239)
T COG1579          95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK  138 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444443333333333333333333333333

>KOG0995|consensus

Probab=88.15  E-value=61  Score=38.10  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHH
Q psy5718         616 ERERLYQQLDEKDEEINQQSQYA  638 (720)
Q Consensus       616 ~~~~~~~q~~~lrdei~~k~~~~  638 (720)
                      -+..+.+|+.++=|.|....-.|
T Consensus       536 er~ki~~ql~~~i~~i~~~k~~i  558 (581)
T KOG0995|consen  536 ERQKIAKQLFAVIDQISDFKVSI  558 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666655544333

>KOG2129|consensus

Probab=88.10  E-value=3.8  Score=45.72  Aligned_cols=93  Identities=17%  Similarity=0.190  Sum_probs=56.4

Q ss_pred             cchhhhHHHHHHHhhhhhhHhhHhhhh--cccc--------------------cchhHHHHhhhCCCCCCcchhh-----
Q psy5718         539 KLEEEFTVARLYISKMKWRNGETVKED--EQVN--------------------LADPVDMAASIAPTPESAPASI-----  591 (720)
Q Consensus       539 ~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~-----  591 (720)
                      ..|.||-|-.|.=+-=|-|.+++.+..  +||-                    |-..|+..|+.||-|.+-+|.=     
T Consensus       153 eqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~  232 (552)
T KOG2129|consen  153 EQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPS  232 (552)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            346678888877666677888877765  4432                    5577888899999888888864     


Q ss_pred             ----cccCccccccccccchHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5718         592 ----LPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYA  638 (720)
Q Consensus       592 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~lrdei~~k~~~~  638 (720)
                          ++++.+-+       .+...-..-+-..|....++||-.+...|+..
T Consensus       233 ~prdia~~~~~~-------gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~  276 (552)
T KOG2129|consen  233 LPRDIAKIPDVH-------GDEAAAEKLHIDKLQAEVERLRTYLSRAQKSY  276 (552)
T ss_pred             chhhhhcCcccc-------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                55554322       11111111122344555567777666555544

>KOG0612|consensus

Probab=87.62  E-value=94  Score=39.68  Aligned_cols=67  Identities=15%  Similarity=0.281  Sum_probs=32.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhh
Q psy5718         456 NYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGL  522 (720)
Q Consensus       456 n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~  522 (720)
                      +|.-.-+.+.......++-...+......+.....++....+..-+++..+.++.+.+=.+.+..-.
T Consensus       571 e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~  637 (1317)
T KOG0612|consen  571 ELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEE  637 (1317)
T ss_pred             hhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3333333333333334444444444444444445555555555666666666666666555444433

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=87.49  E-value=27  Score=33.25  Aligned_cols=63  Identities=19%  Similarity=0.307  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5718         444 KEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM  509 (720)
Q Consensus       444 ke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~  509 (720)
                      -+..++|..+...+..-..++..++.+.+.....|......+..-   -..|..-...-++||.++
T Consensus        55 a~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q---k~~le~e~~~~~~r~~dL  117 (132)
T PF07926_consen   55 AEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ---KEQLEKELSELEQRIEDL  117 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHH
Confidence            344445555555555556666666666666666666555544332   223333334444555553

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=87.21  E-value=30  Score=33.56  Aligned_cols=75  Identities=27%  Similarity=0.334  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHH
Q psy5718         390 YEQLQGEMTRLTQENESAKEEVKELITTAR------RDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQE  463 (720)
Q Consensus       390 ~~ql~~Ei~~~~q~~ekLkeq~eell~~~~------~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e  463 (720)
                      +..|+..+..+...++++..++.+......      ...+.++.++.-|.++++.+..-++++...|++.-++-++.-..
T Consensus        37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRk  116 (143)
T PF12718_consen   37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERK  116 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            334444444444444444444422222111      22346777777777777777777777777777654444443333


Q ss_pred             H
Q psy5718         464 V  464 (720)
Q Consensus       464 ~  464 (720)
                      |
T Consensus       117 v  117 (143)
T PF12718_consen  117 V  117 (143)
T ss_pred             H
Confidence            3

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=87.12  E-value=36  Score=34.74  Aligned_cols=74  Identities=19%  Similarity=0.393  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q psy5718         403 ENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTE  476 (720)
Q Consensus       403 ~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~  476 (720)
                      +..+++.+++..+...+.++..+..++..-.+-++.-.+.+..-.+.|+......++....++.+..+++.+..
T Consensus        61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~  134 (201)
T PF12072_consen   61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIE  134 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444333333333333333333333333333333333333343333333333

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=86.38  E-value=59  Score=36.12  Aligned_cols=19  Identities=16%  Similarity=0.170  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy5718         283 ARKDLKGLEDTVTKELQTL  301 (720)
Q Consensus       283 ~~~~Lk~ei~~Lk~EL~~l  301 (720)
                      +...++.++..++.++..+
T Consensus        82 ~l~~l~~~~~~l~a~~~~l  100 (423)
T TIGR01843        82 DAAELESQVLRLEAEVARL  100 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4455566666666555544

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.29  E-value=13  Score=40.82  Aligned_cols=19  Identities=16%  Similarity=0.064  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy5718         390 YEQLQGEMTRLTQENESAK  408 (720)
Q Consensus       390 ~~ql~~Ei~~~~q~~ekLk  408 (720)
                      +.++..|.+.+.....++.
T Consensus        18 ~~~~~~E~~~Y~~fL~~l~   36 (314)
T PF04111_consen   18 LEQAEKERDTYQEFLKKLE   36 (314)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344445555555444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK00106 hypothetical protein; Provisional

Probab=86.20  E-value=78  Score=37.33  Aligned_cols=29  Identities=24%  Similarity=0.420  Sum_probs=11.3

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy5718         450 LEELAVNYDQKSQEVETKNKEFETLTEEL  478 (720)
Q Consensus       450 leel~~n~d~~~~e~e~~~~e~~~l~~el  478 (720)
                      |+......+.+.++++.+.++++.+..+.
T Consensus       127 Le~kekeLe~reeeLee~~~~~~~~~~~~  155 (535)
T PRK00106        127 LESKEQSLTDKSKHIDEREEQVEKLEEQK  155 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444444444433333

>KOG4438|consensus

Probab=85.90  E-value=52  Score=37.28  Aligned_cols=96  Identities=19%  Similarity=0.156  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCCCcccccCCccccchhhhHHHH
Q psy5718         469 KEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVAR  548 (720)
Q Consensus       469 ~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  548 (720)
                      ..++.|...+.+....-.++..+.+..+..+..-+-++-..+.-|.--|-|+...+-+. -+.-|....|+++|    .+
T Consensus       180 e~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~Lktq-IV~sPeKL~~~lee----mk  254 (446)
T KOG4438|consen  180 ENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQ-IVQSPEKLKEALEE----MK  254 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH----HH
Confidence            34455555555555566667778888887777767777777888888888887765443 22224456677776    56


Q ss_pred             HHHhhhhhhHhhHhhhhcccc
Q psy5718         549 LYISKMKWRNGETVKEDEQVN  569 (720)
Q Consensus       549 ~~~~~~~~~~~~~~~~~~~~~  569 (720)
                      +-|-|-|+=...++...+.|+
T Consensus       255 ~~l~k~k~~~~~l~~K~~iL~  275 (446)
T KOG4438|consen  255 DLLQKEKSAMVELQEKAKILE  275 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777776666654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.64  E-value=50  Score=40.34  Aligned_cols=31  Identities=19%  Similarity=0.325  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy5718         474 LTEELTLKQTTLNTTSTELQQIKDMSNHQKK  504 (720)
Q Consensus       474 l~~el~~~~~~~~~l~~el~~l~~~~~~~~k  504 (720)
                      ..+||......+..+..-+++++...+.|+.
T Consensus       637 ~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~  667 (717)
T PF10168_consen  637 FKKELERMKDQLQDLKASIEQLKKKLDYQQR  667 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444445555555555555555543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=85.46  E-value=68  Score=35.98  Aligned_cols=75  Identities=15%  Similarity=0.197  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         424 QLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM  498 (720)
Q Consensus       424 ~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~  498 (720)
                      .-++-+....+|......-....-|+.-......+++.+++..+...+..-...|..+.+...-|+.|..+|..-
T Consensus       207 ~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~y  281 (499)
T COG4372         207 TRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAY  281 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444455555555556666667777777788888877776666666666666667777777777777655

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=85.42  E-value=37  Score=32.84  Aligned_cols=94  Identities=24%  Similarity=0.378  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Q psy5718         382 LITTARRDYEQLQGEMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD  458 (720)
Q Consensus       382 ~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d  458 (720)
                      ..+.+......++.++.++...+++|+.++   +..+.........++.++..++.-+...++++.-+...+.....   
T Consensus        53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~t---  129 (151)
T PF11559_consen   53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKT---  129 (151)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            344445555666667777777777777666   33334444444455555555555555556655554444443333   


Q ss_pred             hhhHHHHHHHHHHHHHHHHH
Q psy5718         459 QKSQEVETKNKEFETLTEEL  478 (720)
Q Consensus       459 ~~~~e~e~~~~e~~~l~~el  478 (720)
                      +...++.-+..|++.|.+.|
T Consensus       130 q~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen  130 QYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            33445556666666666554

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=85.41  E-value=11  Score=38.89  Aligned_cols=14  Identities=7%  Similarity=0.321  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHHH
Q psy5718         389 DYEQLQGEMTRLTQ  402 (720)
Q Consensus       389 l~~ql~~Ei~~~~q  402 (720)
                      +++.+.+++++..+
T Consensus       101 el~~l~~~l~~~~~  114 (206)
T PRK10884        101 QVKTLTDKLNNIDN  114 (206)
T ss_pred             HHHHHHHHHHHHHh
Confidence            33334444443333

>PRK12704 phosphodiesterase; Provisional

Probab=85.26  E-value=33  Score=40.31  Aligned_cols=19  Identities=32%  Similarity=0.510  Sum_probs=8.5

Q ss_pred             cchHhHHHHHHHhhhhHHH
Q psy5718         673 GLEDTVTKELQTLHNLRKL  691 (720)
Q Consensus       673 ~~~~tv~~el~~l~~l~~~  691 (720)
                      ||....+.=---||.+=|+
T Consensus       355 gld~~~a~~AgLLHDIGK~  373 (520)
T PRK12704        355 GLDVKLAKRAGLLHDIGKA  373 (520)
T ss_pred             CcCHHHHHHHHHHHccCcC
Confidence            4433334444445554443

>PRK11281 hypothetical protein; Provisional

Probab=85.18  E-value=1.3e+02  Score=38.81  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         464 VETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM  498 (720)
Q Consensus       464 ~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~  498 (720)
                      +......|..|+++|.+....++.+..+..+.+..
T Consensus       280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~  314 (1113)
T PRK11281        280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNW  314 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556778888888888888888887666555443

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=85.10  E-value=37  Score=38.16  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=17.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhHHhhhhcCC
Q psy5718         500 NHQKKRINEMLTNLLKDLCEIGLVIGSE  527 (720)
Q Consensus       500 ~~~~kr~~e~~~~l~~dl~e~~~~~~~~  527 (720)
                      .++-.|++++-..|-+    +=.+||.+
T Consensus       205 ~~~la~~a~LE~RL~~----LE~~lG~~  228 (388)
T PF04912_consen  205 SQQLARAADLEKRLAR----LESALGID  228 (388)
T ss_pred             hhHHHHHHHHHHHHHH----HHHHhCCC
Confidence            3566788887777655    88888885

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=85.08  E-value=50  Score=34.13  Aligned_cols=105  Identities=19%  Similarity=0.324  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHH----HHHHHHHHHHHHH----HHHHHHH
Q psy5718         412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQE----VETKNKEFETLTE----ELTLKQT  483 (720)
Q Consensus       412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e----~e~~~~e~~~l~~----el~~~~~  483 (720)
                      +--.....+.|+++..-+.-++..-+.++..+.+.+..+......|..-..-    ++.-+.+++.++.    ++.-+.+
T Consensus        89 E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa  168 (207)
T PF05010_consen   89 EKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQA  168 (207)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            4444556666777777888888877888888877777777766666643322    3333555555544    3445666


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5718         484 TLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDL  517 (720)
Q Consensus       484 ~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl  517 (720)
                      .+.-.+-.++.|.+.-..-.|...| |+.++-||
T Consensus       169 ~lkk~e~~~~SLe~~LeQK~kEn~E-LtkICDeL  201 (207)
T PF05010_consen  169 SLKKEEMKVQSLEESLEQKTKENEE-LTKICDEL  201 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            6666677777777777777777777 88888887

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=84.96  E-value=69  Score=35.60  Aligned_cols=16  Identities=13%  Similarity=0.237  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy5718         286 DLKGLEDTVTKELQTL  301 (720)
Q Consensus       286 ~Lk~ei~~Lk~EL~~l  301 (720)
                      .+..++..++.++.++
T Consensus        78 ~~~~~l~~l~~~~~~l   93 (423)
T TIGR01843        78 DVEADAAELESQVLRL   93 (423)
T ss_pred             hhhhHHHHHHHHHHHH
Confidence            3444444454444444

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=84.70  E-value=0.83  Score=55.34  Aligned_cols=77  Identities=21%  Similarity=0.365  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHH---HHHHhhHHHHHHH------HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         418 ARRDYEQLQGEMTRLT---QENESAKEEVKEV------LQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTT  488 (720)
Q Consensus       418 ~~~~~e~lq~el~~lq---~e~~~~keevke~------~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l  488 (720)
                      ...+..+|+.++..|+   ++..+.++|+.++      ...+|.-..+|.+|-+++...++++..|.+...........|
T Consensus       272 le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~L  351 (713)
T PF05622_consen  272 LEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAML  351 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555554443   4455556666554      455777788999999999999999988888777666666666


Q ss_pred             HHHHHH
Q psy5718         489 STELQQ  494 (720)
Q Consensus       489 ~~el~~  494 (720)
                      +.++..
T Consensus       352 Eeel~~  357 (713)
T PF05622_consen  352 EEELKK  357 (713)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            665554

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0249|consensus

Probab=84.70  E-value=60  Score=39.07  Aligned_cols=45  Identities=20%  Similarity=0.290  Sum_probs=21.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5718         438 SAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQ  482 (720)
Q Consensus       438 ~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~  482 (720)
                      ++.++..-+.+.++-++.+|++-...-+.+...++.|+.++.++-
T Consensus       213 aAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~  257 (916)
T KOG0249|consen  213 AALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR  257 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444444444444555555555444444555555555544443

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=84.69  E-value=31  Score=38.56  Aligned_cols=91  Identities=21%  Similarity=0.364  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Q psy5718         419 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTS------TEL  492 (720)
Q Consensus       419 ~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~------~el  492 (720)
                      .+.++++..+=..|....+..-.+-+.+...|.+....|.+-+.-|.+++.++..++++|.+....|.+-.      +=|
T Consensus       251 ~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPl  330 (359)
T PF10498_consen  251 SKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPL  330 (359)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHH
Confidence            33344444433344444444444444444444455555555555555555555555555554444333322      445


Q ss_pred             HHHHHHHhHHHHHHHHH
Q psy5718         493 QQIKDMSNHQKKRINEM  509 (720)
Q Consensus       493 ~~l~~~~~~~~kr~~e~  509 (720)
                      -++|.....-|+=|.+|
T Consensus       331 v~IKqAl~kLk~EI~qM  347 (359)
T PF10498_consen  331 VKIKQALTKLKQEIKQM  347 (359)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            56666666666555543

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.49  E-value=20  Score=37.64  Aligned_cols=69  Identities=22%  Similarity=0.346  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy5718         381 KLITTARRDYEQLQGEMTRLTQENESAKE---EVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA  449 (720)
Q Consensus       381 k~~ee~~~l~~ql~~Ei~~~~q~~ekLke---q~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qa  449 (720)
                      +.+++...+...|..|......++-.+.+   .|+-.+.+++.+..+.+..+.++.+|+..+|++|.++...
T Consensus        32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444443333333322222   2477888888888889999999999999999999887766

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PRK00106 hypothetical protein; Provisional

Probab=84.47  E-value=74  Score=37.52  Aligned_cols=7  Identities=43%  Similarity=0.762  Sum_probs=2.9

Q ss_pred             hhhhHHH
Q psy5718         685 LHNLRKL  691 (720)
Q Consensus       685 l~~l~~~  691 (720)
                      ||.+=|.
T Consensus       382 LHDIGK~  388 (535)
T PRK00106        382 LHDMGKA  388 (535)
T ss_pred             HHhccCc
Confidence            4444443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=84.35  E-value=1.2e+02  Score=37.98  Aligned_cols=19  Identities=16%  Similarity=0.251  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHhH
Q psy5718         287 LKGLEDTVTKELQTLHNLR  305 (720)
Q Consensus       287 Lk~ei~~Lk~EL~~l~nlr  305 (720)
                      +..++..++..+..|.+..
T Consensus       230 l~~e~e~l~~~~~el~~~~  248 (908)
T COG0419         230 LEQEIEALEERLAELEEEK  248 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444443333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=84.14  E-value=1.5e+02  Score=38.95  Aligned_cols=111  Identities=14%  Similarity=0.186  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         413 ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELA--------VNYDQKSQEVETKNKEFETLTEELTLKQTT  484 (720)
Q Consensus       413 ell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~--------~n~d~~~~e~e~~~~e~~~l~~el~~~~~~  484 (720)
                      +.+...+.+++..+.++..++.+.+.++.+..++...+++|.        ..+++-.+++++..+..+.....+..+...
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~  362 (1353)
T TIGR02680       283 RDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAESR  362 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455555555555555555555555444444443        222222233344444444444444455555


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHhhhhcCC
Q psy5718         485 LNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSE  527 (720)
Q Consensus       485 ~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~~~  527 (720)
                      ...+..++....+-...-.+.+.+    .+.+|...+...|=.
T Consensus       363 ~e~~~~~~~~~~~r~~~~~~~l~~----~~~el~~~a~~~~~~  401 (1353)
T TIGR02680       363 LEEERRRLDEEAGRLDDAERELRA----AREQLARAAERAGLS  401 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCC
Confidence            555555555554444444444333    444666555555544

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=83.67  E-value=32  Score=38.34  Aligned_cols=96  Identities=26%  Similarity=0.334  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---h
Q psy5718         386 ARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDY---E----QLQGEMTRLTQENESAKEEVKEVLQALEELA---V  455 (720)
Q Consensus       386 ~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~---e----~lq~el~~lq~e~~~~keevke~~qaleel~---~  455 (720)
                      ...+.++|..-|.+...++..|..|-.+.-...+...   +    +.|.+-.++|.|      -.+...-||||-+   +
T Consensus       283 veelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqae------c~rQ~qlaLEEKaaLrk  356 (442)
T PF06637_consen  283 VEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAE------CARQTQLALEEKAALRK  356 (442)
T ss_pred             HHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence            3445577777888888888888777743333322222   2    333334444442      2345566666532   2


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         456 NYDQKSQEVETKNKEFETLTEELTLKQTTLNT  487 (720)
Q Consensus       456 n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~  487 (720)
                      .-|--.++++++.++.+++..+++-+.+.+++
T Consensus       357 erd~L~keLeekkreleql~~q~~v~~saLdt  388 (442)
T PF06637_consen  357 ERDSLAKELEEKKRELEQLKMQLAVKTSALDT  388 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            33333455555555555555555555444443

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=83.46  E-value=22  Score=33.55  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy5718         422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVN  456 (720)
Q Consensus       422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n  456 (720)
                      +..+|+++..+-..-...+.+++|+..||+||..-
T Consensus        15 ~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l   49 (119)
T COG1382          15 LQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL   49 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            44556666666666666677777777777776543

>KOG0804|consensus

Probab=83.34  E-value=64  Score=36.84  Aligned_cols=27  Identities=19%  Similarity=0.223  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         472 ETLTEELTLKQTTLNTTSTELQQIKDM  498 (720)
Q Consensus       472 ~~l~~el~~~~~~~~~l~~el~~l~~~  498 (720)
                      +.+.+.+..+.....+|+..|.+|--.
T Consensus       424 e~~~~~~~s~d~~I~dLqEQlrDlmf~  450 (493)
T KOG0804|consen  424 EREKEALGSKDEKITDLQEQLRDLMFF  450 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhee
Confidence            334444444444555554444444333

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=83.31  E-value=49  Score=38.81  Aligned_cols=10  Identities=30%  Similarity=0.418  Sum_probs=4.6

Q ss_pred             HHHhhhhHHH
Q psy5718         682 LQTLHNLRKL  691 (720)
Q Consensus       682 l~~l~~l~~~  691 (720)
                      --.||.+=|+
T Consensus       358 AGLLHDIGK~  367 (514)
T TIGR03319       358 AGLLHDIGKA  367 (514)
T ss_pred             HHHHHhcCcc
Confidence            3345554443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=82.90  E-value=1.2e+02  Score=36.64  Aligned_cols=17  Identities=18%  Similarity=0.302  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy5718         285 KDLKGLEDTVTKELQTL  301 (720)
Q Consensus       285 ~~Lk~ei~~Lk~EL~~l  301 (720)
                      ..+..+++.+..++..+
T Consensus       219 ~~l~~~~e~l~~~i~~l  235 (650)
T TIGR03185       219 KEQSEKYEDLAQEIAHL  235 (650)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=82.08  E-value=64  Score=33.08  Aligned_cols=77  Identities=19%  Similarity=0.279  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy5718         422 YEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQ-TTLNTTSTELQQIKDM  498 (720)
Q Consensus       422 ~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~-~~~~~l~~el~~l~~~  498 (720)
                      |++-...+..+.........+++++...-+.|...|.+-.++-+++...++..-.++.++. -.+.-|+..+..|.+.
T Consensus        81 y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~  158 (201)
T PF13851_consen   81 YEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQ  158 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444444444443332 2333334444444333

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=81.79  E-value=1.1e+02  Score=35.73  Aligned_cols=51  Identities=25%  Similarity=0.383  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhHHHHHHH
Q psy5718         396 EMTRLTQENESAKEEVKELITTARRDYEQ----------LQGEMTRLTQENESAKEEVKEV  446 (720)
Q Consensus       396 Ei~~~~q~~ekLkeq~eell~~~~~~~e~----------lq~el~~lq~e~~~~keevke~  446 (720)
                      ++++...++.-+.+.++.++...+++++.          +-.-+.++.+.|..+++|+..|
T Consensus       275 eld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V  335 (570)
T COG4477         275 ELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERV  335 (570)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555442          2224445556666666555443

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=81.50  E-value=10  Score=41.33  Aligned_cols=39  Identities=23%  Similarity=0.354  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy5718         385 TARRDYEQLQGEMTRLTQENESAKEEV---KELITTARRDYE  423 (720)
Q Consensus       385 e~~~l~~ql~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e  423 (720)
                      .+|-.+.|||.|-..+.+.|+-||+.+   +|.++...+++.
T Consensus        95 kAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~  136 (302)
T PF09738_consen   95 KAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR  136 (302)
T ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888888888888888888777   334444444433

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=81.17  E-value=35  Score=29.38  Aligned_cols=63  Identities=30%  Similarity=0.382  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5718         385 TARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE  451 (720)
Q Consensus       385 e~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qale  451 (720)
                      .+...++++-+.|.....+++.|+++-..+-    ...+.|..+..+|+.+-.+..+-++-++..|+
T Consensus         8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~----~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~   70 (72)
T PF06005_consen    8 QLEEKIQQAVETIALLQMENEELKEKNNELK----EENEELKEENEQLKQERNAWQERLRSLLGKLE   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3333444444445555555555544433222    33444555555555555555555555554443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG0243|consensus

Probab=81.11  E-value=1.5e+02  Score=37.58  Aligned_cols=96  Identities=17%  Similarity=0.256  Sum_probs=55.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         430 TRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVE--------------TKNKEFETLTEELTLKQTTLNTTSTELQQI  495 (720)
Q Consensus       430 ~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e--------------~~~~e~~~l~~el~~~~~~~~~l~~el~~l  495 (720)
                      ..|+.+.+..+..+....+.|+.++..|.+-...+.              ........|+..+...+..+.+|.+.|...
T Consensus       479 ~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~  558 (1041)
T KOG0243|consen  479 ELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRK  558 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            355555555555555555555555555555443321              223335556666666777777777777766


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHhHHhhhhc
Q psy5718         496 KDMSNHQKKRINEMLTNLLKDLCEIGLVIG  525 (720)
Q Consensus       496 ~~~~~~~~kr~~e~~~~l~~dl~e~~~~~~  525 (720)
                      .....+.+.-|-++-..|+.-+.-+-..+.
T Consensus       559 ~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~  588 (1041)
T KOG0243|consen  559 DRLDDDNQEVIDDFQSQLSENLSTLHGLVA  588 (1041)
T ss_pred             hccccccHHHHHHHhhhhhHHHHHHHHHHh
Confidence            666666666666666666665555554443

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=80.96  E-value=30  Score=35.55  Aligned_cols=99  Identities=18%  Similarity=0.255  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy5718         398 TRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEE  477 (720)
Q Consensus       398 ~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~e  477 (720)
                      -+-+-++.-||+|+.+.-+.....    -.+|-.|..-+..++..+......+.++...+..++.+++.-..+++....|
T Consensus         6 Cqk~GEIsLLKqQLke~q~E~~~K----~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~E   81 (202)
T PF06818_consen    6 CQKSGEISLLKQQLKESQAEVNQK----DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNE   81 (202)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence            344455666777764433322221    2233334444444444444444444444555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q psy5718         478 LTLKQTTLNTTSTELQQIKDMSN  500 (720)
Q Consensus       478 l~~~~~~~~~l~~el~~l~~~~~  500 (720)
                      ..-+..++..++.|+..|++...
T Consensus        82 a~lLrekl~~le~El~~Lr~~l~  104 (202)
T PF06818_consen   82 AELLREKLGQLEAELAELREELA  104 (202)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHH
Confidence            55555555556666666655433

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG0963|consensus

Probab=80.93  E-value=1.3e+02  Score=35.83  Aligned_cols=30  Identities=30%  Similarity=0.267  Sum_probs=14.3

Q ss_pred             cchhhhHHHHHHHhhhhhhHhhHhhhhccc
Q psy5718         539 KLEEEFTVARLYISKMKWRNGETVKEDEQV  568 (720)
Q Consensus       539 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  568 (720)
                      .+..|-+-.|.--+-.++++-.+.++..++
T Consensus       387 ~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el  416 (629)
T KOG0963|consen  387 KLQNENASLRVANSGLSGRITELSKKGEEL  416 (629)
T ss_pred             hhhHHHHHHhccccccchhHHHHHhhhhhh
Confidence            445555545544444455444444444433

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=80.92  E-value=62  Score=32.87  Aligned_cols=31  Identities=29%  Similarity=0.496  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5718         424 QLQGEMTRLTQENESAKEEVKEVLQALEELA  454 (720)
Q Consensus       424 ~lq~el~~lq~e~~~~keevke~~qaleel~  454 (720)
                      .+..++..|..+++....++.++....+.+.
T Consensus       124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e  154 (189)
T PF10211_consen  124 ELEEEIEELEEEKEELEKQVQELKNKCEQLE  154 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444333

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=80.70  E-value=83  Score=33.77  Aligned_cols=112  Identities=21%  Similarity=0.322  Sum_probs=59.2

Q ss_pred             CCCchHHHhHHHHHhhhhHHHHHHHHHHHhhhhcccccchhHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         328 DGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLR-ATMERVKLITTARRDYEQLQGEMTRLTQENES  406 (720)
Q Consensus       328 ~~~~~~~~qki~~le~~Le~L~~~~~qLv~dn~~l~~elp~~~~~~~-~~~Er~k~~ee~~~l~~ql~~Ei~~~~q~~ek  406 (720)
                      +|-+....+||..++.+||.|.+..+|.--.-..+...   +.+.-. .+.++.. ...+.++.+.|.+.-+.+....++
T Consensus        10 eGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAa---LqKQKqK~e~ek~e-~s~LkREnq~l~e~c~~lek~rqK   85 (307)
T PF10481_consen   10 EGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAA---LQKQKQKVEEEKNE-YSALKRENQSLMESCENLEKTRQK   85 (307)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHhhh-hhhhhhhhhhHHHHHHHHHHHHHH
Confidence            34455778999999999999987766532111111111   111111 1111111 112234444555544444444444


Q ss_pred             HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy5718         407 AKEEV----------KELITTARRDYEQLQGEMTRLTQENESAKEEV  443 (720)
Q Consensus       407 Lkeq~----------eell~~~~~~~e~lq~el~~lq~e~~~~keev  443 (720)
                      |--.+          +--+.++....++|.+++.++..|++.+....
T Consensus        86 lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~  132 (307)
T PF10481_consen   86 LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA  132 (307)
T ss_pred             hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33322          55566777777788888888877777665544

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=80.59  E-value=49  Score=30.73  Aligned_cols=38  Identities=16%  Similarity=0.335  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5718         475 TEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL  513 (720)
Q Consensus       475 ~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l  513 (720)
                      ..++..+...+..+.++++.+.+.....+ ...++|..+
T Consensus        80 ~~ei~~l~~~l~~l~~~~~k~e~~l~~~~-~Y~~fL~~v  117 (126)
T PF13863_consen   80 EAEIKKLKAELEELKSEISKLEEKLEEYK-KYEEFLEKV  117 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            33333334444444444444444433333 234444443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=80.54  E-value=78  Score=33.08  Aligned_cols=28  Identities=11%  Similarity=0.268  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         468 NKEFETLTEELTLKQTTLNTTSTELQQI  495 (720)
Q Consensus       468 ~~e~~~l~~el~~~~~~~~~l~~el~~l  495 (720)
                      ...+..|...|..........+.....|
T Consensus       175 e~~i~~L~~~lkeaE~Rae~aE~~v~~L  202 (237)
T PF00261_consen  175 EEKIRDLEEKLKEAENRAEFAERRVKKL  202 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=80.35  E-value=72  Score=32.55  Aligned_cols=68  Identities=26%  Similarity=0.310  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5718         386 ARRDYEQLQGEMTRLTQENESAKEEVKELITTARRD---YEQLQGEMTRLTQENESAKEEVKEVLQALEEL  453 (720)
Q Consensus       386 ~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~---~e~lq~el~~lq~e~~~~keevke~~qaleel  453 (720)
                      +...++-+++|+..+...+-.+.++-..+.+.++.-   ...|-.++..||++|.....+...+.-.-.+|
T Consensus        58 al~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL  128 (193)
T PF14662_consen   58 ALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL  128 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence            333444445555555555555555554444443322   22233344455555555544444444443333

>TIGR00634 recN DNA repair protein RecN

Probab=80.25  E-value=1.3e+02  Score=35.52  Aligned_cols=46  Identities=24%  Similarity=0.377  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy5718         470 EFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLC  518 (720)
Q Consensus       470 e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~~l~~dl~  518 (720)
                      .++.|..++.+....+..+-.+|...+....   +++.+-++..|+||+
T Consensus       347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a---~~l~~~v~~~l~~L~  392 (563)
T TIGR00634       347 SLEALEEEVDKLEEELDKAAVALSLIRRKAA---ERLAKRVEQELKALA  392 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCC
Confidence            4444444444444444555455554433321   233344455555544

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=80.21  E-value=1.5e+02  Score=36.19  Aligned_cols=49  Identities=20%  Similarity=0.270  Sum_probs=28.6

Q ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         450 LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDM  498 (720)
Q Consensus       450 leel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~  498 (720)
                      +.-+..-+.+....+..+.+++..++.--.+....+++.+.||-.+-|-
T Consensus       407 l~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEe  455 (717)
T PF09730_consen  407 LMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEE  455 (717)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            3333333444455566666666666666666666666666666665554

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=80.16  E-value=2.1e+02  Score=37.76  Aligned_cols=26  Identities=4%  Similarity=0.070  Sum_probs=14.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhh
Q psy5718         626 EKDEEINQQSQYAEKLKEQIMEQEEV  651 (720)
Q Consensus       626 ~lrdei~~k~~~~~~l~~~~~~~~~~  651 (720)
                      .||+-|..-...|+..-..|....=+
T Consensus      1121 ~l~~ri~~A~~~v~~mN~~l~~~~~s 1146 (1353)
T TIGR02680      1121 HLQSLILAAERQVAAMNTELAKRPTS 1146 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            66666666666665555444333333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG4302|consensus

Probab=80.09  E-value=1.3e+02  Score=36.25  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy5718         420 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL  453 (720)
Q Consensus       420 ~~~e~lq~el~~lq~e~~~~keevke~~qaleel  453 (720)
                      +.++.+++.|+.|+.+...-.++|.+...++..|
T Consensus       160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l  193 (660)
T KOG4302|consen  160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSL  193 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677888888888888888888877776666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	720
2y5w_A	365	Crystal Structure Of Drosophila Melanogaster Kinesi		7e-66
1mkj_A	349	Human Kinesin Motor Domain With Docked Neck Linker		7e-48
1bg2_A	325	Human Ubiquitous Kinesin Motor Domain Length = 325		8e-48
4atx_C	340	Rigor Kinesin Motor Domain With An Ordered Neck-Lin		1e-47
2kin_A	238	Kinesin (Monomeric) From Rattus Norvegicus Length =		2e-38
1goj_A	355	Structure Of A Fast Kinesin: Implications For Atpas		2e-25
2h58_A	330	Crystal Structure Of The Kifc3 Motor Domain In Comp		1e-19
3h4s_A	386	Structure Of The Complex Of A Mitotic Kinesin With		3e-17
2vvg_A	350	Crystal Structure Of The G.Intestinalis Kinesin 2 G		2e-16
3b6u_A	372	Crystal Structure Of The Motor Domain Of Human Kine		6e-16
3nwn_A	359	Crystal Structure Of The Human Kif9 Motor Domain In		1e-15
3gbj_A	354	Crystal Structure Of The Motor Domain Of Kinesin Ki		5e-15
1sdm_A	369	Crystal Structure Of Kinesin-Like Calmodulin Bindin		1e-14
1ia0_K	394	Kif1a Head-Microtubule Complex Structure In Atp-For		1e-13
3hqd_A	369	Human Kinesin Eg5 Motor Domain In Complex With Ampp		1e-13
1x88_A	359	Human Eg5 Motor Domain Bound To Mg-Adp And Monastro		1e-13
4a1z_A	368	Eg5-1 Length = 368		1e-13
1q0b_A	367	Crystal Structure Of The Motor Protein Ksp In Compl		1e-13
4a28_A	368	Eg5-2 Length = 368		1e-13
1i5s_A	367	Crystal Structure Of The Kif1a Motor Domain Complex		1e-13
1ii6_A	368	Crystal Structure Of The Mitotic Kinesin Eg5 In Com		1e-13
4aqv_C	373	Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma		1e-13
3zcw_A	348	Eg5 - New Allosteric Binding Site Length = 348		1e-13
4ap0_A	370	The Mitotic Kinesin Eg5 In Complex With Mg-Adp And		1e-13
1vfv_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		2e-13
1i6i_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		2e-13
2wbe_C	373	Kinesin-5-Tubulin Complex With Amppnp Length = 373		3e-13
4h1g_A	715	Structure Of Candida Albicans Kar3 Motor Domain Fus		1e-12
3t0q_A	349	Motor Domain Structure Of The Kar3-Like Kinesin Fro		1e-12
2xt3_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		2e-12
4a14_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		4e-12
3lre_A	355	Crystal Structure Analysis Of Human Kinesin-8 Motor		4e-12
4etp_A	403	C-Terminal Motor And Motor Homology Domain Of Kar3v		5e-12
1f9t_A	358	Crystal Structures Of Kinesin Mutants Reveal A Sign		8e-12
3kar_A	346	The Motor Domain Of Kinesin-Like Protein Kar3, A Sa		8e-12
2owm_A	443	Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3		9e-12
3bfn_A	388	Crystal Structure Of The Motor Domain Of Human Kine		2e-11
1f9w_A	347	Crystal Structures Of Mutants Reveal A Signalling P		3e-11
1f9v_A	347	Crystal Structures Of Mutants Reveal A Signalling P		6e-11
1f9u_A	347	Crystal Structures Of Mutants Reveal A Signalling P		6e-11
1t5c_A	349	Crystal Structure Of The Motor Domain Of Human Kine		8e-11
4gkr_A	371	Structure Of The C-Terminal Motor Domain Of Kar3 Fr		3e-10
3pxn_A	344	Crystal Structure Of The Drosophila Kinesin Family		7e-10
3dc4_A	344	Crystal Structure Of The Drosophila Kinesin Family		8e-10
2gry_A	420	Crystal Structure Of The Human Kif2 Motor Domain In		3e-08
2rep_A	376	Crystal Structure Of The Motor Domain Of Human Kine		3e-07
3l1c_A	383	Kinesin-14 Protein Ncd, T436s Mutant Length = 383		5e-07
2ncd_A	420	Ncd (Non-Claret Disjunctional) Dimer From D. Melano		6e-07
1cz7_A	406	The Crystal Structure Of A Minus-End Directed Micro		6e-07
3u06_A	412	Crystal Structure Of The Kinesin-14 Ncdg347d Length		6e-07
2heh_A	387	Crystal Structure Of The Kif2c Motor Domain (Casp T		3e-06
3b6v_A	395	Crystal Structure Of The Motor Domain Of Human Kine		3e-06
1n6m_A	409	Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY		4e-06
1v8j_A	410	The Crystal Structure Of The Minimal Functional Dom		4e-06
3edl_D	331	Kinesin13-Microtubule Ring Complex Length = 331		5e-06
1ry6_A	360	Crystal Structure Of Internal Kinesin Motor Domain		1e-04

>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365

Iteration: 1
 Score =  248 bits (633), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 143/267 (53%), Positives = 164/267 (61%), Gaps = 56/267 (20%)
Query: 7   ADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPXXXXXXXXXXXXKFYLFDKVFKPN 66
           A+REI AEDSI+VVCRFRPLN SEEKAGSKF+VKFP            K YLFDKVFKPN
Sbjct: 3   AEREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPN 62
Query: 67  A-------------------------------------TQEKVYDEAAKSI--------- 80
           A                                     T E V  ++ K           
Sbjct: 63  ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDI 122
Query: 81  --------VSVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGK 130
                   V+++F +    Y + +D++R    +    +  H   + + +  GATERFV  
Sbjct: 123 FNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSS 182
Query: 131 PEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGS 190
           PE+VFEVIEEGK+NRHIAVTNMNEHSSRSHSVFLINVKQENLEN+KKLSGKLYLVDLAGS
Sbjct: 183 PEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGS 242
Query: 191 EKVSKTGAEGTVLDEAKNINKSLSADG 217
           EKVSKTGAEGTVLDEAKNINKSLSA G
Sbjct: 243 EKVSKTGAEGTVLDEAKNINKSLSALG 269

>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349

Iteration: 1
 Score =  188 bits (478), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 114/261 (43%), Positives = 143/261 (54%), Gaps = 59/261 (22%)
Query: 13  AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPXXXXXXXXXXXXKFYLFDKVFKPNATQE-- 70
           AE +I+V+CRFRPLN SE   G K+I KF             K Y FD+VF+ + +QE  
Sbjct: 5   AECNIKVMCRFRPLNESEVNRGDKYIAKF---QGEDTVVIASKPYAFDRVFQSSTSQEQV 61
Query: 71  ------------------------------------KVYDEAAKSIVSVQFVDADQYMVS 94
                                               K++D     I+     D   Y+ S
Sbjct: 62  YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYS 121
Query: 95  -----------------VDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFE 136
                            +D++R    +  + +  H   + + +  G TERFV  P+EV +
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMD 181
Query: 137 VIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKT 196
            I+EGK+NRH+AVTNMNEHSSRSHS+FLINVKQEN + E+KLSGKLYLVDLAGSEKVSKT
Sbjct: 182 TIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKT 241
Query: 197 GAEGTVLDEAKNINKSLSADG 217
           GAEG VLDEAKNINKSLSA G
Sbjct: 242 GAEGAVLDEAKNINKSLSALG 262

>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325

Iteration: 1
 Score =  188 bits (478), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 114/261 (43%), Positives = 143/261 (54%), Gaps = 59/261 (22%)
Query: 13  AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPXXXXXXXXXXXXKFYLFDKVFKPNATQE-- 70
           AE +I+V+CRFRPLN SE   G K+I KF             K Y FD+VF+ + +QE  
Sbjct: 5   AECNIKVMCRFRPLNESEVNRGDKYIAKF---QGEDTVVIASKPYAFDRVFQSSTSQEQV 61
Query: 71  ------------------------------------KVYDEAAKSIVSVQFVDADQYMVS 94
                                               K++D     I+     D   Y+ S
Sbjct: 62  YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYS 121
Query: 95  -----------------VDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFE 136
                            +D++R    +  + +  H   + + +  G TERFV  P+EV +
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMD 181
Query: 137 VIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKT 196
            I+EGK+NRH+AVTNMNEHSSRSHS+FLINVKQEN + E+KLSGKLYLVDLAGSEKVSKT
Sbjct: 182 TIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKT 241
Query: 197 GAEGTVLDEAKNINKSLSADG 217
           GAEG VLDEAKNINKSLSA G
Sbjct: 242 GAEGAVLDEAKNINKSLSALG 262

>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340

Iteration: 1
 Score =  188 bits (477), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 113/261 (43%), Positives = 143/261 (54%), Gaps = 59/261 (22%)
Query: 13  AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPXXXXXXXXXXXXKFYLFDKVFKPNATQE-- 70
           AE +I+V+CRFRPLN SE   G K++ KF             K Y FD+VF+ + +QE  
Sbjct: 5   AECNIKVMCRFRPLNESEVNRGDKYVAKF---QGEDTVMIASKPYAFDRVFQSSTSQEQV 61
Query: 71  ------------------------------------KVYDEAAKSIVSVQFVDADQYMVS 94
                                               K++D     I+     D   Y+ S
Sbjct: 62  YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIYS 121
Query: 95  -----------------VDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFE 136
                            +D++R    +  + +  H   + + +  G TERFV  P+EV +
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMD 181
Query: 137 VIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKT 196
            I+EGK+NRH+AVTNMNEHSSRSHS+FLINVKQEN + E+KLSGKLYLVDLAGSEKVSKT
Sbjct: 182 TIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKT 241
Query: 197 GAEGTVLDEAKNINKSLSADG 217
           GAEG VLDEAKNINKSLSA G
Sbjct: 242 GAEGAVLDEAKNINKSLSALG 262

>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238

Iteration: 1
 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/237 (40%), Positives = 126/237 (53%), Gaps = 58/237 (24%)
Query: 13  AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPXXXXXXXXXXXXKFYLFDKVFKPNATQE-- 70
           AE SI+V+CRFRPLN +E   G KFI KF             K Y+FD+V  PN TQE  
Sbjct: 4   AECSIKVMCRFRPLNEAEILRGDKFIPKF--KGEETVVIGQGKPYVFDRVLPPNTTQEQV 61
Query: 71  ------------------------------------KVYDEAAKSIV------------- 81
                                               K++D     I+             
Sbjct: 62  YNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYS 121
Query: 82  ---SVQF-VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEEVFE 136
              +++F +    + + +D++R    +  + +  H   + + +  G TERFV  PEEV +
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMD 181
Query: 137 VIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKV 193
           VI+EGKANRH+AVTNMNEHSSRSHS+FLIN+KQEN+E EKKLSGKLYLVDLAGSEKV
Sbjct: 182 VIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKV 238

>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 122/264 (46%), Gaps = 58/264 (21%)
Query: 12  AAEDSIRVVCRFRPLNHSEEKAGSKFIVKF--PXXXXXXXXXXXXKFY------------ 57
           ++ +SI+VV RFRP N  E ++G + IV F  P             F             
Sbjct: 3   SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQS 62
Query: 58  -LFDKVFKP---------NATQ--------------------------------EKVYDE 75
            +FD   KP         N T                                 E+++  
Sbjct: 63  DIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTS 122
Query: 76  AAKSIVSVQFVDADQYM-VSVDRLRSDHQLKASTMCEHSLMHLIVF-PGATERFVGKPEE 133
              S  ++++     YM + ++R+R     +   +  H   +  V+  G  E +V   +E
Sbjct: 123 ILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQE 182
Query: 134 VFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKV 193
           V+EV+  G   R +A TNMN+ SSRSHS+F+I + Q+N+E     SG+L+LVDLAGSEKV
Sbjct: 183 VYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKV 242
Query: 194 SKTGAEGTVLDEAKNINKSLSADG 217
            KTGA G  L+EAK INKSLSA G
Sbjct: 243 GKTGASGQTLEEAKKINKSLSALG 266

>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/109 (47%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 109 MCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVK 168
           +C      L V PG TE  V   +++ +V E G  NR    TN+NEHSSRSH++ ++ V+
Sbjct: 158 LCPDGSGQLYV-PGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR 216
Query: 169 QENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
             +     + +GKL LVDLAGSE+V K+GAEG+ L EA++INKSLSA G
Sbjct: 217 GVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALG 265

>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 113/269 (42%), Gaps = 79/269 (29%)
Query: 17  IRVVCRFRPLNHSEEKAGSK--------FIVKFPXXXXXXXXXXXXKFYLFDKVFKPNAT 68
           IRV CR RPLN  E     K        F V+ P            K +++D+VF   A+
Sbjct: 15  IRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKR------KQHIYDRVFDMRAS 68
Query: 69  QEKVYDEAAKSIVSVQFVDADQYMVSV--------------------------------- 95
           Q+ ++++    + S      D Y V +                                 
Sbjct: 69  QDDIFEDTKYLVQSA----VDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFN 124
Query: 96  ----DRLRSDHQLKAST--MCEHSLMHLIVFPGATERF---------------------V 128
               D  R    LKA    + + +L+ L++ P +  R                      +
Sbjct: 125 ILKRDSKRFSFSLKAYMVELYQDTLVDLLL-PKSARRLKLEIKKDSKGMVFVENVTTIPI 183
Query: 129 GKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLA 188
              EE+  ++E G   RH++ TNMNE SSRSH +  + ++  +L+ +    GKL  VDLA
Sbjct: 184 STLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAARGKLSFVDLA 243
Query: 189 GSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           GSE+V K+G+ G  L EA++INKSLSA G
Sbjct: 244 GSERVKKSGSAGNQLKEAQSINKSLSALG 272

>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 85/158 (53%), Gaps = 12/158 (7%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVK-QENLENEK 176
           I   G +   V    E+  ++++G ANRH+A T MN+ SSRSHS+F++ ++  E +EN++
Sbjct: 171 IYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKE 230
Query: 177 KLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG--AGKLEEEFT------- 226
            +  GKL LVDLAGSE+ SKTGA G  L E   IN SLSA G    KL E  T       
Sbjct: 231 VIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDS 290
Query: 227 -VARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEY 263
            + RL    +    K L+    S  S+  +E    + Y
Sbjct: 291 KLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRY 328

>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372

Iteration: 1
 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 64/95 (67%), Gaps = 4/95 (4%)
Query: 127 FVGKP-EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVK--QENLENEKKLS-GKL 182
           FV K  +E+  V+  G  NR +  TNMNEHSSRSH++F+I ++  +  L+ E  +  GKL
Sbjct: 195 FVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKL 254
Query: 183 YLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
            LVDLAGSE+ +KTGA+G  L EA  IN SLSA G
Sbjct: 255 NLVDLAGSERQAKTGAQGERLKEATKINLSLSALG 289

>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQEN--LENE 175
           +   G +     + E+ F ++ EG+ NR IA   MN++SSRSH +F I ++  +  L  E
Sbjct: 194 VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEE 253
Query: 176 KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
           K ++ K+ LVDLAGSE++ K+G+EG VL EA  INKSLS
Sbjct: 254 KYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLS 292

>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 15/133 (11%)
Query: 111 EHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQE 170
           EHS++   V  G ++  V   +++  ++ EG  +R +A TNMNE SSRSH+VF I +   
Sbjct: 172 EHSVLGPYV-DGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHT 230
Query: 171 NLENEKKLSG----KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG--------- 217
             + +   SG    KL LVDLAGSE+ +KTGA G  L E  NINKSL+  G         
Sbjct: 231 LYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQ 290
Query: 218 -AGKLEEEFTVAR 229
            AGK + +F   R
Sbjct: 291 SAGKNKNKFVPYR 303

>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 56/86 (65%)
Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSE 191
           EE+  +I+ G   RH   T MNE SSRSH +  + ++  NL+ +    GKL  VDLAGSE
Sbjct: 179 EELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSE 238
Query: 192 KVSKTGAEGTVLDEAKNINKSLSADG 217
           +V K+G+ G  L EA++INKSLSA G
Sbjct: 239 RVKKSGSAGNQLKEAQSINKSLSALG 264

>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS----GKLYLVDLA 188
           ++ ++++ G   R +A TNMNE SSRSH+VF I   Q+  + E  ++     K+ LVDLA
Sbjct: 207 DIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLA 266
Query: 189 GSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           GSE+   TGA+GT L E  NINKSL+  G
Sbjct: 267 GSERADSTGAKGTRLKEGANINKSLTTLG 295

>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
           ++  G  E  V   +EV++++E+G A R  A T MN +SSRSHSVF   I++K+  ++ E
Sbjct: 194 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 253
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           + +  GKL LVDLAGSE + ++GA      EA NIN+SL   G
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLG 296

>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
           ++  G  E  V   +EV++++E+G A R  A T MN +SSRSHSVF   I++K+  ++ E
Sbjct: 185 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 244
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           + +  GKL LVDLAGSE + ++GA      EA NIN+SL   G
Sbjct: 245 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLG 287

>pdb|4A1Z|A Chain A, Eg5-1 Length = 368

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
           ++  G  E  V   +EV++++E+G A R  A T MN +SSRSHSVF   I++K+  ++ E
Sbjct: 194 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 253
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           + +  GKL LVDLAGSE + ++GA      EA NIN+SL   G
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLG 296

>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
           ++  G  E  V   +EV++++E+G A R  A T MN +SSRSHSVF   I++K+  ++ E
Sbjct: 193 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 252
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
           + +  GKL LVDLAGSE + ++GA      EA NIN+SL
Sbjct: 253 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 291

>pdb|4A28|A Chain A, Eg5-2 Length = 368

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
           ++  G  E  V   +EV++++E+G A R  A T MN +SSRSHSVF   I++K+  ++ E
Sbjct: 194 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 253
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
           + +  GKL LVDLAGSE + ++GA      EA NIN+SL
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 292

>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS----GKLYLVDLA 188
           ++ ++++ G   R +A TNMNE SSRSH+VF I   Q+  + E  ++     K+ LVDLA
Sbjct: 191 DIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLA 250
Query: 189 GSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           GSE+   TGA+GT L E  NINKSL+  G
Sbjct: 251 GSERADSTGAKGTRLKEGANINKSLTTLG 279

>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
           ++  G  E  V   +EV++++E+G A R  A T MN +SSRSHSVF   I++K+  ++ E
Sbjct: 194 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 253
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
           + +  GKL LVDLAGSE + ++GA      EA NIN+SL
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 292

>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
           ++  G  E  V   +EV++++E+G A R  A T MN +SSRSHSVF   I++K+  ++ E
Sbjct: 194 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 253
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
           + +  GKL LVDLAGSE + ++GA      EA NIN+SL
Sbjct: 254 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 292

>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
           ++  G  E  V   +EV++++E+G A R  A T MN +SSRSHSVF   I++K+  ++ E
Sbjct: 179 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 238
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           + +  GKL LVDLAGSE + ++GA      EA NIN+SL   G
Sbjct: 239 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLG 281

>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVF--LINVKQENLENE 175
           ++  G  E  V   +EV++++E+G A R  A T MN +SSRSHSVF   I++K+  ++ E
Sbjct: 196 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 255
Query: 176 KKLS-GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
           + +  GKL LVDLAGSE + ++GA      EA NIN+SL
Sbjct: 256 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 294

>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS----GKLYLVDLA 188
           ++ ++++ G   R +A TNMNE SSRSH+VF I   Q+  + E  ++     K+ LVDLA
Sbjct: 191 DIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLA 250
Query: 189 GSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           GSE+   TGA+GT L E  NINKSL+  G
Sbjct: 251 GSERADSTGAKGTRLKEGANINKSLTTLG 279

>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS----GKLYLVDLA 188
           ++ ++++ G   R +A TNMNE SSRSH+VF I   Q+  + E  ++     K+ LVDLA
Sbjct: 191 DIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLA 250
Query: 189 GSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           GSE+   TGA+GT L E  NINKSL+  G
Sbjct: 251 GSERADSTGAKGTRLKEGANINKSLTTLG 279

>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 96  DRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEH 155
           D L +D   K     + +    ++  G  E  V   ++V++++E+GK  R  A T MN  
Sbjct: 173 DLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQ 232
Query: 156 SSRSHSVF--LINVKQENLENEKKLS-GKLYLVDLAGSEKVSKTGAE-GTVLDEAKNINK 211
           SSRSH+VF  ++++++  +E E  L  GKL LVDLAGSE VSK G E G  + E  NIN+
Sbjct: 233 SSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQ 292
Query: 212 SLSADG 217
           SL   G
Sbjct: 293 SLLTLG 298

>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 55/87 (63%)
Query: 131 PEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGS 190
           PE+   ++ +    R  A T  N+HSSRSHS+F+I+++  N   ++   G L L+DLAGS
Sbjct: 561 PEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSYGTLNLIDLAGS 620
Query: 191 EKVSKTGAEGTVLDEAKNINKSLSADG 217
           E+++ + AEG  L E + INKSLS  G
Sbjct: 621 ERLNNSRAEGDRLKETQAINKSLSCLG 647

>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 53/85 (62%)
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK 192
           +V  ++++    R  A T  NE SSRSHSVF++++   NL   +   GKL LVDLAGSE+
Sbjct: 194 QVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGKLNLVDLAGSER 253
Query: 193 VSKTGAEGTVLDEAKNINKSLSADG 217
           ++ +   G  L E +NINKSLS  G
Sbjct: 254 INSSAVTGERLRETQNINKSLSCLG 278

>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 21/167 (12%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEK- 176
           +V  G  E  V   +EV  ++E G A RH   T++N  SSRSH+VF + +KQ      + 
Sbjct: 173 VVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRL 232
Query: 177 -------KLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA-------------D 216
                   L  K + VDLAGSE+V KTG+ G +  E+  IN SL A              
Sbjct: 233 PRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRR 292
Query: 217 GAGKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEY 263
           G+     +  + R+    +    K ++  C S  SS  +E    + Y
Sbjct: 293 GSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNY 339

>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 21/167 (12%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEK- 176
           +V  G  E  V   +EV  ++E G A RH   T++N  SSRSH+VF + ++Q      + 
Sbjct: 173 VVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRL 232
Query: 177 -------KLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA-------------D 216
                   L  K + VDLAGSE+V KTG+ G  L E+  IN SL A              
Sbjct: 233 PRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRR 292
Query: 217 GAGKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEY 263
           G+     +  + R+    +    K ++  C S  SS  +E    + Y
Sbjct: 293 GSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNY 339

>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---N 174
           +V  G T       EE+  +++ G  NR    T+MN  SSRSH+VF I ++Q++     N
Sbjct: 187 VVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASIN 246
Query: 175 EKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           +     K+ L+DLAGSE+ S +GA+GT   E  NIN+SL A G
Sbjct: 247 QNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALG 289

>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 132 EEVFEVIEEGKAN--RHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
           EE+ E+I + KAN  R  A T  NEHSSRSHS+F+I++   N +      G L LVDLAG
Sbjct: 245 EEMVEIILK-KANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAG 303
Query: 190 SEKVSKTGAEGTVLDEAKNINKSLSADG 217
           SE+++ +   G  L E +NINKSLSA G
Sbjct: 304 SERINVSQVVGDRLRETQNINKSLSALG 331

>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358

Iteration: 1
 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 16/157 (10%)
Query: 132 EEVFEVIEEGKAN--RHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
           EE+ E+I + KAN  R  A T  NEHSSRSHS+F+I++   N +      G L LVDLAG
Sbjct: 200 EEMVEIILK-KANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAG 258
Query: 190 SEKVSKTGAEGTVLDEAKNINKSLSADG----------AGKLEEEFTVARL-YI--SKMK 236
           SE+++ +   G  L E +NINKSLS  G          + K    F  ++L Y+    + 
Sbjct: 259 SERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLT 318
Query: 237 SEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLL 273
            + K L+    S  SS   E   ++ +  ++  TRL+
Sbjct: 319 GDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLV 355

>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 82/157 (52%), Gaps = 16/157 (10%)
Query: 132 EEVFEVIEEGKAN--RHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
           EE+ E+I + KAN  R  A T  NEHSSRSHS+F+I++   N +      G L LVDLAG
Sbjct: 188 EEMVEIILK-KANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAG 246
Query: 190 SEKVSKTGAEGTVLDEAKNINKSLSADG----------AGKLEEEFTVARL-YI--SKMK 236
           SE+++ +   G  L E +NINKSLS  G          + K    F  ++L Y+    + 
Sbjct: 247 SERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLT 306
Query: 237 SEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLL 273
            + K L+    S  SS   E   ++ +  ++  TRL+
Sbjct: 307 GDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLV 343

>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443

Iteration: 1
 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQ--ENLENEKKL--SGKLYLVDL 187
           EE+   +  G  +R +A T MN+ SSRSH+VF I +KQ   +LE +     S ++ LVDL
Sbjct: 241 EEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDL 300
Query: 188 AGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           AGSE+   T A G  L E  NINKSL+  G
Sbjct: 301 AGSERAKSTEATGQRLREGSNINKSLTTLG 330

>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 118 IVFPGATERFVGKPEEVFEVIE----EGKANRHIAVTNMNEHSSRSHSVFLINVKQ-ENL 172
           I+ PG ++    KP   F   E        NR +  T +N+ SSRSH+V L+ V Q E L
Sbjct: 184 ILIPGLSQ----KPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERL 239
Query: 173 ENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
              ++  GKLYL+DLAGSE   +TG +G  L E+  IN SL   G
Sbjct: 240 APFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLG 284

>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 132 EEVFEVIEEGKAN--RHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
           EE+ E+I + KAN  R  A T  NEHSSRSHS+F+I++   N +      G L LVDLAG
Sbjct: 189 EEMVEIILK-KANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAG 247
Query: 190 SEKVSKTGAEGTVLDEAKNINKSLSADG----------AGKLEEEFTVARL-YI--SKMK 236
           S +++ +   G  L E +NINKSLS  G          + K    F  ++L Y+    + 
Sbjct: 248 SARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLT 307
Query: 237 SEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLL 273
            + K L+    S  SS   E   ++ +  ++  TRL+
Sbjct: 308 GDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLV 344

>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 132 EEVFEVIEEGKAN--RHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
           EE+ E+I + KAN  R  A T  NEHSS SHS+F+I++   N +      G L LVDLAG
Sbjct: 189 EEMVEIILK-KANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLVDLAG 247
Query: 190 SEKVSKTGAEGTVLDEAKNINKSLSADG----------AGKLEEEFTVARL-YI--SKMK 236
           SE+++ +   G  L E +NINKSLS  G          + K    F  ++L Y+    + 
Sbjct: 248 SERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLT 307
Query: 237 SEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLL 273
            + K L+    S  SS   E   ++ +  ++  TRL+
Sbjct: 308 GDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLV 344

>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 132 EEVFEVIEEGKAN--RHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAG 189
           EE+ E+I + KAN  R  A T  NEHSSRSHS+F+I++   N +      G L LVDLAG
Sbjct: 189 EEMVEIILK-KANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAG 247
Query: 190 SEKVSKTGAEGTVLDEAKNINKSLSADG----------AGKLEEEFTVARL-YI--SKMK 236
           SE+++ +   G  L E +NI KSLS  G          + K    F  ++L Y+    + 
Sbjct: 248 SERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLT 307
Query: 237 SEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLL 273
            + K L+    S  SS   E   ++ +  ++  TRL+
Sbjct: 308 GDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLV 344

>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 124 TERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQ------ENLENEKK 177
           TE  V   E   + I +G+ +RH   T MN+ SSRSH++F + ++        N E   K
Sbjct: 167 TEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVK 226
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSL 213
           +S  L LVDLAGSE+ ++TGA G  L E  NIN+SL
Sbjct: 227 VS-HLNLVDLAGSERAAQTGAAGVRLKEGCNINRSL 261

>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 55/86 (63%)
Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSE 191
           + V +V++     R  A T  NEHSSRSHS+F+I+++ +N    +K  G L LVDLAGSE
Sbjct: 214 DTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEGTGEKSQGILNLVDLAGSE 273
Query: 192 KVSKTGAEGTVLDEAKNINKSLSADG 217
           +++ +   G  L E ++INKSLS  G
Sbjct: 274 RLNSSMVVGERLRETQSINKSLSCLG 299

>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK 192
           ++  ++E G  NR +  TNMN +SSRSH++  I+VK       K    ++ +VDLAGSE 
Sbjct: 194 DLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVK------SKTHHSRMNIVDLAGSEG 247
Query: 193 VSKTGAEGTVLDEAKNINKSL 213
           V +TG EG    E  NIN  L
Sbjct: 248 VRRTGHEGVARQEGVNINLGL 268

>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK 192
           ++  ++E G  NR +  TNMN +SSRSH++  I+VK       K    ++ +VDLAGSE 
Sbjct: 194 DLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVK------SKTHHSRMNIVDLAGSEG 247
Query: 193 VSKTGAEGTVLDEAKNINKSL 213
           V +TG EG    E  NIN  L
Sbjct: 248 VRRTGHEGVARQEGVNINLGL 268

>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 6/95 (6%)
Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGK 181
           G  ER V   E+V ++I+ G + R    T+ N HSSRSH+VF I ++++      KL GK
Sbjct: 265 GLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG-----KLHGK 319
Query: 182 LYLVDLAGSEKVSKT-GAEGTVLDEAKNINKSLSA 215
             L+DLAG+E+ + T  A+     E   INKSL A
Sbjct: 320 FSLIDLAGNERGADTSSADRQTRLEGAEINKSLLA 354

>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSE 191
           +EV  ++   + NR +A T  NE SSRSHSVF + +  E+     +    L LVDLAGSE
Sbjct: 224 KEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSE 283
Query: 192 KVSKTGAEGTV----LDEAKNINKSLSADG 217
           ++    A G      L E + IN SLS  G
Sbjct: 284 RLDPGLALGPGERERLRETQAINSSLSTLG 313

>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
           I     TE  V  P  +  ++   K NR  A T  NE SSRSH+V  + +   + E ++ 
Sbjct: 221 IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI 280
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
             G + LVDLAGSE   KT    T + E KNIN+SLS
Sbjct: 281 SVGSINLVDLAGSES-PKT---STRMTETKNINRSLS 313

>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
           I     TE  V  P  +  ++   K NR  A T  NE SSRSH+V  + +   + E ++ 
Sbjct: 232 IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI 291
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
             G + LVDLAGSE    +    T + E KNIN+SLS
Sbjct: 292 SVGSINLVDLAGSE----SPKTSTRMTETKNINRSLS 324

>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
           I     TE  V  P  +  ++   K NR  A T  NE SSRSH+V  + +   + E ++ 
Sbjct: 218 IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI 277
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
             G + LVDLAGSE   KT    T + E KNIN+SLS
Sbjct: 278 SVGSINLVDLAGSES-PKT---STRMTETKNINRSLS 310

>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
           I     TE  V  P  +  ++   K NR  A T  NE SSRSH+V  + +   + E ++ 
Sbjct: 224 IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI 283
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
             G + LVDLAGSE   KT    T + E KNIN+SLS
Sbjct: 284 SVGSINLVDLAGSES-PKT---STRMTETKNINRSLS 316

>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGK 181
           G  E  V   ++V ++I+ G A R    T  N +SSRSH+ F I ++ +      ++ GK
Sbjct: 227 GLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG-----RMHGK 281
Query: 182 LYLVDLAGSEKVSKT-GAEGTVLDEAKNINKSLSA 215
             LVDLAG+E+ + T  A+     E   INKSL A
Sbjct: 282 FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLA 316

>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVK--QENLENEKKLS-GKLYLVDLA 188
           +E+  V+  G   R +  T+MNE SSRSH++F+I V+  +   + +  +  GKL LVDLA
Sbjct: 201 KEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNLVDLA 260
Query: 189 GSEKVSKTG 197
           GSE+ +K G
Sbjct: 261 GSERQNKAG 269

>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
           I     TE  V  P  +  ++   K NR  A T  NE SSRSH+V  + +   + E ++ 
Sbjct: 221 IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEI 280
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
             G + LVDLAGSE   KT    T + E KNI +SLS
Sbjct: 281 SVGSINLVDLAGSES-PKT---STRMTETKNIKRSLS 313

>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGK 181
           G  E  V   ++V ++I  G A R    T  N +SSRSH+ F     Q  L  + +L GK
Sbjct: 247 GLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACF-----QILLRTKGRLHGK 301
Query: 182 LYLVDLAGSEKVSKT-GAEGTVLDEAKNINKSLSA 215
             LVDLAG+E+ + T  A+     E   INKSL A
Sbjct: 302 FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLA 336

>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGK 181
           G  E  V   ++V ++I  G A R    T  N +SSRSH+ F     Q  L  + +L GK
Sbjct: 175 GLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACF-----QILLRTKGRLHGK 229
Query: 182 LYLVDLAGSEKVSKT-GAEGTVLDEAKNINKSLSA 215
             LVDLAG+E+ + T  A+     E   INKSL A
Sbjct: 230 FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLA 264

>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 9/93 (9%)
Query: 126 RFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS-GKLYL 184
           R + K E + ++I+ G   R I V + N+ SSRSH++  I++K  N    K  S GK+  
Sbjct: 180 RVLTKEELILKMID-GVLLRKIGVNSQNDESSRSHAILNIDLKDIN----KNTSLGKIAF 234
Query: 185 VDLAGSEKVSKTGAEG--TVLDEAKNINKSLSA 215
           +DLAGSE+ + T ++   T  D A NIN+SL A
Sbjct: 235 IDLAGSERGADTVSQNKQTQTDGA-NINRSLLA 266

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	720
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	2e-61
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	9e-55
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	4e-49
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	4e-49
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	1e-48
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	3e-46
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	4e-18
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	2e-45
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	1e-44
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	4e-20
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	6e-43
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	5e-15
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	1e-42
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	2e-14
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	5e-42
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	2e-12
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	7e-42
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	5e-10
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	1e-41
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	1e-11
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	1e-40
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	6e-12
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	1e-39
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	2e-15
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	2e-39
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	1e-13
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	4e-39
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	8e-16
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	8e-39
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	2e-14
3u06_A	412	Protein claret segregational; motor domain, stalk	3e-37
3u06_A	412	Protein claret segregational; motor domain, stalk	5e-12
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	5e-37
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	4e-16
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	5e-37
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	1e-09
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	1e-35
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	5e-13
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	3e-34
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	9e-09
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	2e-32
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	9e-09
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	8e-30
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	5e-10
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	1e-29
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	5e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-10
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	6e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-04

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330

 Score =  208 bits (531), Expect = 2e-61
 Identities = 78/264 (29%), Positives = 116/264 (43%), Gaps = 61/264 (23%)

Query: 12  AAEDSIRVVCRFRPLNHSEEKAGS-KFIVKFPSGGEENGLSLGG---KFYLFDKVFKPNA 67
            ++ +IRV+ R RP+   + +       V F +  +     L       +  DKVF P A
Sbjct: 1   GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQA 60

Query: 68  TQEKVYDEAAKSIVSV------------Q--------------------------FVDAD 89
           +Q+ V+ E    + S             Q                          F +  
Sbjct: 61  SQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQ 120

Query: 90  ------QYMVSV-----------DRLRSDHQLKAS-TMCEHSLMHLIVFPGATERFVGKP 131
                 +Y ++V           D L  + Q K    +C      L V PG TE  V   
Sbjct: 121 EKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYV-PGLTEFQVQSV 179

Query: 132 EEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSE 191
           +++ +V E G  NR    TN+NEHSSRSH++ ++ V+  +     + +GKL LVDLAGSE
Sbjct: 180 DDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSE 239

Query: 192 KVSKTGAEGTVLDEAKNINKSLSA 215
           +V K+GAEG+ L EA++INKSLSA
Sbjct: 240 RVGKSGAEGSRLREAQHINKSLSA 263

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350

 Score =  190 bits (486), Expect = 9e-55
 Identities = 65/275 (23%), Positives = 113/275 (41%), Gaps = 74/275 (26%)

Query: 13  AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE------------NGLSLGGKFYLFD 60
           + D+I+V+ R RPLN  E +  +  I++      +                   + + FD
Sbjct: 2   SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFD 61

Query: 61  KVFKPNATQEKVYDEAAKSIV--------------------------------------- 81
            V+   +    ++  + K ++                                       
Sbjct: 62  AVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSF 121

Query: 82  -----SVQFVDAD-QYMVSV-----------DRLRSDHQLKASTMCEHSLMHLIVFPGAT 124
                ++    ++  ++V             D ++++ +L    + E     + V  G +
Sbjct: 122 KHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLP---LKEDKTRGIYV-DGLS 177

Query: 125 ERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKL--SGKL 182
              V    E+  ++++G ANRH+A T MN+ SSRSHS+F++ ++   +   K++   GKL
Sbjct: 178 MHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKL 237

Query: 183 YLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
            LVDLAGSE+ SKTGA G  L E   IN SLSA G
Sbjct: 238 NLVDLAGSERQSKTGATGETLVEGAKINLSLSALG 272

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347

 Score =  175 bits (445), Expect = 4e-49
 Identities = 59/275 (21%), Positives = 90/275 (32%), Gaps = 80/275 (29%)

Query: 16  SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL---------GGKFYLFDK----- 61
           +IRV CR RP   + E + +  I            S+             + FDK     
Sbjct: 4   NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 63

Query: 62  -----VFK---------------------------------------PNATQE---KVYD 74
                VFK                                       P+        +  
Sbjct: 64  DTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 123

Query: 75  EAAKSI---VSVQFV-----------DADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVF 120
              K     V+ +F+            +D        +   H+++               
Sbjct: 124 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR-----HDQETKTTTI 178

Query: 121 PGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG 180
              T   +   E V  ++++    R  A T  NEHSS SHS+F+I++   N +      G
Sbjct: 179 TNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYG 238

Query: 181 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
            L LVDLAGSE+++ +   G  L E +NINKSLS 
Sbjct: 239 TLNLVDLAGSERINVSQVVGDRLRETQNINKSLSC 273

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349

 Score =  175 bits (445), Expect = 4e-49
 Identities = 58/273 (21%), Positives = 94/273 (34%), Gaps = 75/273 (27%)

Query: 16  SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL--------GGKFYLFDK------ 61
           +IRV CR RP   +E +  S  +++  +  +                  + FD       
Sbjct: 6   NIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSH 65

Query: 62  ----VFK---------------------------------------PNATQE---KVYDE 75
               +F+                                       P           + 
Sbjct: 66  TNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANL 125

Query: 76  AAKSI---VSVQFVDADQYMVSV-DRLRSDHQLKASTMCEHSLMHLIVF---------PG 122
             +     +  ++++   Y  ++ D LR             S  H I             
Sbjct: 126 KERGWNYEMECEYIEI--YNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITN 183

Query: 123 ATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKL 182
            T   +    +V  ++++    R  A T  NE SSRSHSVF++++   NL   +   GKL
Sbjct: 184 VTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQGKL 243

Query: 183 YLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
            LVDLAGSE+++ +   G  L E +NINKSLS 
Sbjct: 244 NLVDLAGSERINSSAVTGERLRETQNINKSLSC 276

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344

 Score =  173 bits (441), Expect = 1e-48
 Identities = 53/278 (19%), Positives = 88/278 (31%), Gaps = 80/278 (28%)

Query: 2   SNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFY---- 57
            +      E A   ++R+  R  P            +V+FP   +   L +    +    
Sbjct: 9   DDKRRRGMEGAKLSAVRIAVREAPYR-QFLGRREPSVVQFPPWSDGKSLIVDQNEFHFDH 67

Query: 58  ----------LFDKVFKP---------NAT-------------------QEKVYDEAA-- 77
                     ++  +  P           T                     ++  E    
Sbjct: 68  AFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGI 127

Query: 78  ---------KSIVSVQFVDADQYMVSV-----------DRLRSDHQLKASTMCEHSLMHL 117
                    + + + Q  + D   V             D L S             ++  
Sbjct: 128 LPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTP--------HMPMVAA 179

Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
                 T   +    ++  ++E G  NR +  TNMN +SSRSH++  I+VK       K 
Sbjct: 180 RC-QRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKS------KT 232

Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
              ++ +VDLAGSE V +TG EG    E  NIN  L +
Sbjct: 233 HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLS 270

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325

 Score =  166 bits (423), Expect = 3e-46
 Identities = 78/98 (79%), Positives = 86/98 (87%)

Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
               G TERFV  P+EV + I+EGK+NRH+AVTNMNEHSSRSHS+FLINVKQEN + E+K
Sbjct: 163 PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK 222

Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
           LSGKLYLVDLAGSEKVSKTGAEG VLDEAKNINKSLSA
Sbjct: 223 LSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSA 260

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325

 Score = 84.9 bits (211), Expect = 4e-18
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEK 71
           AE +I+V+CRFRPLN SE   G K+I KF     E+ + +  K Y FD+VF+ + +QE+
Sbjct: 4  LAECNIKVMCRFRPLNESEVNRGDKYIAKFQG---EDTVVIASKPYAFDRVFQSSTSQEQ 60

Query: 72 VYDEAAKSIV 81
          VY++ AK IV
Sbjct: 61 VYNDCAKKIV 70

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349

 Score =  165 bits (419), Expect = 2e-45
 Identities = 64/264 (24%), Positives = 101/264 (38%), Gaps = 61/264 (23%)

Query: 12  AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFY-------------- 57
           A E ++ V  R RPLN  EE  G    V + +         G K +              
Sbjct: 1   AEEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKN 60

Query: 58  LFDKVFKP---------NAT-----QE---KVY----DEAAKSIV---------SVQFVD 87
           +++++  P         N T     Q    K Y     E    ++          ++   
Sbjct: 61  VYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFP 120

Query: 88  ADQYMVSV-----------DRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFE 136
             ++++ V           D L    ++K   + E    ++ V    TE  V   E   +
Sbjct: 121 DREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYV-ADLTEEVVYTSEMALK 179

Query: 137 VIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK-----LSGKLYLVDLAGSE 191
            I +G+ +RH   T MN+ SSRSH++F + ++                  L LVDLAGSE
Sbjct: 180 WITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSE 239

Query: 192 KVSKTGAEGTVLDEAKNINKSLSA 215
           + ++TGA G  L E  NIN+SL  
Sbjct: 240 RAAQTGAAGVRLKEGCNINRSLFI 263

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365

 Score =  163 bits (414), Expect = 1e-44
 Identities = 90/100 (90%), Positives = 93/100 (93%)

Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
               GATERFV  PE+VFEVIEEGK+NRHIAVTNMNEHSSRSHSVFLINVKQENLEN+KK
Sbjct: 170 PYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKK 229

Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA G
Sbjct: 230 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALG 269

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365

 Score = 91.5 bits (228), Expect = 4e-20
 Identities = 60/76 (78%), Positives = 68/76 (89%)

Query: 6  PADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKP 65
           A+REI AEDSI+VVCRFRPLN SEEKAGSKF+VKFP+  EEN +S+ GK YLFDKVFKP
Sbjct: 2  SAEREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKP 61

Query: 66 NATQEKVYDEAAKSIV 81
          NA+QEKVY+EAAKSIV
Sbjct: 62 NASQEKVYNEAAKSIV 77

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355

 Score =  158 bits (401), Expect = 6e-43
 Identities = 55/97 (56%), Positives = 69/97 (71%)

Query: 121 PGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG 180
            G  E +V   +EV+EV+  G   R +A TNMN+ SSRSHS+F+I + Q+N+E     SG
Sbjct: 170 KGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSG 229

Query: 181 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           +L+LVDLAGSEKV KTGA G  L+EAK INKSLSA G
Sbjct: 230 QLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALG 266

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355

 Score = 76.1 bits (188), Expect = 5e-15
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEEN-GLSLGGKFYLFDKVFKPNATQE 70
          ++ +SI+VV RFRP N  E ++G + IV F                + FD+VF  +  Q 
Sbjct: 3  SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQS 62

Query: 71 KVYDEAAKSIV 81
           ++D + K  V
Sbjct: 63 DIFDFSIKPTV 73

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369

 Score =  157 bits (400), Expect = 1e-42
 Identities = 42/95 (44%), Positives = 57/95 (60%)

Query: 121 PGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG 180
              T   +   EE+  +I+ G   RH   T MNE SSRSH +  + ++  NL+ +    G
Sbjct: 168 ENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARG 227

Query: 181 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
           KL  VDLAGSE+V K+G+ G  L EA++INKSLSA
Sbjct: 228 KLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSA 262

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG--KFYLFDKVFKPNATQEKVY 73
           IRV CR RPL   E  A  +  ++         L      K +++D+VF  NATQ+ V+
Sbjct: 6  KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVF 65

Query: 74 DEAAKSIVSV 83
          ++    + S 
Sbjct: 66 EDTKYLVQSA 75

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403

 Score =  156 bits (397), Expect = 5e-42
 Identities = 39/95 (41%), Positives = 54/95 (56%)

Query: 121 PGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG 180
              T   +   E V  ++++    R  A T  NEHSSRSHS+F+I++   N +      G
Sbjct: 235 TNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYG 294

Query: 181 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
            L LVDLAGSE+++ +   G  L E +NINKSLSA
Sbjct: 295 TLNLVDLAGSERINVSQVVGDRLRETQNINKSLSA 329

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403

 Score = 68.8 bits (169), Expect = 2e-12
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 9/77 (11%)

Query: 16  SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL---------GGKFYLFDKVFKPN 66
           +IRV  R RP   + E + +  I            S+             + FDK+F   
Sbjct: 60  NIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 119

Query: 67  ATQEKVYDEAAKSIVSV 83
            T   V+ E  + + S 
Sbjct: 120 DTNVDVFKEVGQLVQSS 136

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376

 Score =  154 bits (392), Expect = 1e-41
 Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 121 PGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG 180
             A    V   +EV  ++   + NR +A T  NE SSRSHSVF + +  E+     +   
Sbjct: 213 TNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQCGA 272

Query: 181 KLYLVDLAGSEKVSKTGAEGTV----LDEAKNINKSLSA 215
            L LVDLAGSE++    A G      L E + IN SLS 
Sbjct: 273 PLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLST 311

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 21/89 (23%)

Query: 16  SIRVVCRFRPLNHSEEKAGSKFIVKFP--------------SGGEENGLSLGG------- 54
           +IRV CR RP+   E       ++                 S  +E   +L G       
Sbjct: 23  NIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPR 82

Query: 55  KFYLFDKVFKPNATQEKVYDEAAKSIVSV 83
             + FD+VF P + Q++V++E A  + S 
Sbjct: 83  HDFSFDRVFPPGSGQDEVFEEIAMLVQSA 111

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366

 Score =  151 bits (385), Expect = 1e-40
 Identities = 41/98 (41%), Positives = 59/98 (60%), Gaps = 4/98 (4%)

Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS-- 179
             ++  V    ++ ++++ G   R +A TNMNE SSRSH+VF I   Q+  + E  ++  
Sbjct: 180 DLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 239

Query: 180 --GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
              K+ LVDLAGSE+   TGA+GT L E  NINKSL+ 
Sbjct: 240 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTT 277

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366

 Score = 66.8 bits (164), Expect = 6e-12
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 12/81 (14%)

Query: 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGG----EENGLSLGGKFYLFDKVFKPN-- 66
          A  S++V  R RP N  E    SK I++                  K + FD  +  +  
Sbjct: 2  AGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTS 61

Query: 67 ------ATQEKVYDEAAKSIV 81
                A+Q++VY +  + ++
Sbjct: 62 PEDINYASQKQVYRDIGEEML 82

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372

 Score =  149 bits (378), Expect = 1e-39
 Identities = 43/97 (44%), Positives = 59/97 (60%), Gaps = 3/97 (3%)

Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS-- 179
             +       +E+  V+  G  NR +  TNMNEHSSRSH++F+I ++   +  + +    
Sbjct: 191 DLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIR 250

Query: 180 -GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
            GKL LVDLAGSE+ +KTGA+G  L EA  IN SLSA
Sbjct: 251 VGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSA 287

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372

 Score = 77.6 bits (192), Expect = 2e-15
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 2  SNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE-------NGLSLGG 54
          S+         + +S+RVV R RP+N  E+ A    +V       +              
Sbjct: 8  SSGRENLYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMP 67

Query: 55 KFYLFDKVFKPNATQEKVYDEAAKSIV 81
          K + FD V+  NA Q ++YDE  + +V
Sbjct: 68 KTFTFDAVYDWNAKQFELYDETFRPLV 94

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388

 Score =  149 bits (378), Expect = 2e-39
 Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQ-ENLENEK 176
           I+ PG +++ +    +          NR +  T +N+ SSRSH+V L+ V Q E L   +
Sbjct: 184 ILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFR 243

Query: 177 KLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
           +  GKLYL+DLAGSE   +TG +G  L E+  IN SL  
Sbjct: 244 QREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFV 282

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 4/84 (4%)

Query: 2  SNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG----KFY 57
          S+             +RV  R RP       A     V+          +         Y
Sbjct: 8  SSGRENLYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKY 67

Query: 58 LFDKVFKPNATQEKVYDEAAKSIV 81
           FD  +   +TQ+ +Y  + + I+
Sbjct: 68 QFDAFYGERSTQQDIYAGSVQPIL 91

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344

 Score =  146 bits (372), Expect = 4e-39
 Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 8/106 (7%)

Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQ-------- 169
           +V  G  E  V   +EV  ++E G A RH   T++N  SSRSH+VF + ++Q        
Sbjct: 173 VVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRL 232

Query: 170 ENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
                 + L  K + VDLAGSE+V KTG+ G  L E+  IN SL A
Sbjct: 233 PRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLA 278

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344

 Score = 78.4 bits (194), Expect = 8e-16
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 5  APADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFK 64
                 A E  +RV  R RPL   E   G +  ++   G     L    + + F  V  
Sbjct: 1  GAMGLPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG-RDRHFGFHVVLA 59

Query: 65 PNATQEKVYDEAAKSIV 81
           +A QE VY    + ++
Sbjct: 60 EDAGQEAVYQACVQPLL 76

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359

 Score =  146 bits (371), Expect = 8e-39
 Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 3/101 (2%)

Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---N 174
           ++  G  E  V   +EV++++E+G A R  A T MN +SSRSHSVF + +  +       
Sbjct: 185 VIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGE 244

Query: 175 EKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
           E    GKL LVDLAGSE + ++GA      EA NIN+SL  
Sbjct: 245 ELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLT 285

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359

 Score = 74.5 bits (184), Expect = 2e-14
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 9  REIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG-------KFYLFDK 61
          ++     +I+VV R RP N +E KA +  IV+     +E  +  GG       K Y FD 
Sbjct: 2  KKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDM 61

Query: 62 VFKPNATQEKVYDEAAKSIV 81
          VF  +  Q  VY      I+
Sbjct: 62 VFGASTKQIDVYRSVVCPIL 81

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412

 Score =  143 bits (362), Expect = 3e-37
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 5/120 (4%)

Query: 96  DRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEH 155
           D L ++ +     M +++   + V    TE  V  P  +  ++   K NR  A T  NE 
Sbjct: 203 DLLSNEQKDMEIRMAKNNKNDIYV-SNITEETVLDPNHLRHLMHTAKMNRATASTAGNER 261

Query: 156 SSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
           SSRSH+V  + +   + E ++   G + LVDLAGSE    +    T + E KNIN+SLS 
Sbjct: 262 SSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSE 317

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412

 Score = 67.3 bits (165), Expect = 5e-12
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 15  DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE-------NGLSLGGKFYLFDKVFKPNA 67
           D+IRV CR RP   SEE               E           +G + + FD+VF P +
Sbjct: 59  DNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 118

Query: 68  TQEKVYDEAAKSIVSV 83
           +Q  +++  +  I S 
Sbjct: 119 SQSDIFEMVSPLIQSA 134

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373

 Score =  141 bits (359), Expect = 5e-37
 Identities = 47/102 (46%), Positives = 62/102 (60%), Gaps = 4/102 (3%)

Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINV--KQENLENE 175
           ++  G  E  V   ++V++++E+GK  R  A T MN  SSRSH+VF I V  ++  +E E
Sbjct: 195 VIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGE 254

Query: 176 KKL-SGKLYLVDLAGSEKVSKTGAE-GTVLDEAKNINKSLSA 215
             L  GKL LVDLAGSE VSK G E G  + E  NIN+SL  
Sbjct: 255 DMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLT 296

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373

 Score = 79.6 bits (197), Expect = 4e-16
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 2  SNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE----NGLSLGGKFY 57
            N     +  +  +I+V  R RPLN  E    S  +V      E        S   K +
Sbjct: 10 GGNTSRQPQKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKF 69

Query: 58 LFDKVFKPNATQEKVYDEAAKSIV 81
           FD+ F P + Q  VY      ++
Sbjct: 70 TFDRSFGPESKQCDVYSVVVSPLI 93

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354

 Score =  141 bits (357), Expect = 5e-37
 Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 4/100 (4%)

Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS-- 179
           G ++  V   +++  ++ EG  +R +A TNMNE SSRSH+VF I +     + +   S  
Sbjct: 182 GLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGE 241

Query: 180 --GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
             GKL LVDLAGSE+ +KTGA G  L E  NINKSL+  G
Sbjct: 242 KVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLG 281

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 18/84 (21%)

Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKF----------PSGGEENGLSLGGKFYLFDKVF-- 63
           ++V  R RP+N  E    +K +V             +   +       K + +D  F  
Sbjct: 2  KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWS 61

Query: 64 ------KPNATQEKVYDEAAKSIV 81
                +  A Q+ V+    ++I+
Sbjct: 62 MDESVKEKYAGQDIVFKCLGENIL 85

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360

 Score =  137 bits (347), Expect = 1e-35
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
           +V        V   EE+   + +G   R I V + N+ SSRSH++  I++K     N+  
Sbjct: 171 VVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD---INKNT 227

Query: 178 LSGKLYLVDLAGSEKVSKTGAEGT-VLDEAKNINKSLSA 215
             GK+  +DLAGSE+ + T ++      +  NIN+SL A
Sbjct: 228 SLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLA 266

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360

 Score = 70.0 bits (172), Expect = 5e-13
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 10/75 (13%)

Query: 17 IRVVCRFRPLNHSEEKAGSKFIVKFPSGGE----------ENGLSLGGKFYLFDKVFKPN 66
          I+VV R RPL+  E+K     I+   +             +    +    ++ DKVF   
Sbjct: 2  IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61

Query: 67 ATQEKVYDEAAKSIV 81
               VY+   K ++
Sbjct: 62 VDNFTVYENTIKPLI 76

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443

 Score =  135 bits (342), Expect = 3e-34
 Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 122 GATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS-- 179
             TE  V   EE+   +  G  +R +A T MN+ SSRSH+VF I +KQ + + E   +  
Sbjct: 231 DLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTE 290

Query: 180 --GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
              ++ LVDLAGSE+   T A G  L E  NINKSL+ 
Sbjct: 291 RSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTT 328

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 25/105 (23%)

Query: 2   SNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKF------------------PS 43
            + A +        ++RVV R R     E +  ++ IV+                    +
Sbjct: 25  DDTASSFVSKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADA 84

Query: 44  GGEENGLSLGGKFYLFDKVF-------KPNATQEKVYDEAAKSIV 81
            G  +   L  K + FDK F       +  ATQE VYD   +  +
Sbjct: 85  RGARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFL 129

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355

 Score =  128 bits (323), Expect = 2e-32
 Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 4/108 (3%)

Query: 111 EHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQE 170
           E +   ++V  G T       EE+  +++ G  NR    T+MN  SSRSH+VF I ++Q+
Sbjct: 181 EDTQKGVVV-HGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQ 239

Query: 171 NLE---NEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
           +     N+     K+ L+DLAGSE+ S +GA+GT   E  NIN+SL A
Sbjct: 240 DKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLA 287

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355

 Score = 56.9 bits (138), Expect = 9e-09
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 22/89 (24%)

Query: 15 DSIRVVCRFRPLNHSEEKAGSKFIVKF---------PSGGEENGLSLGG----------- 54
            ++VV R RP N  E+ AG   +V           P   E +                 
Sbjct: 10 HHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQN 69

Query: 55 --KFYLFDKVFKPNATQEKVYDEAAKSIV 81
              ++FD VF   +TQ +V++   K I+
Sbjct: 70 KDLKFVFDAVFDETSTQSEVFEHTTKPIL 98

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387

 Score =  121 bits (305), Expect = 8e-30
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 6/99 (6%)

Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
           +   G  E  V   ++V ++I+ G A R    T  N +SSRSH+ F I ++ +      +
Sbjct: 223 VQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG-----R 277

Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVL-DEAKNINKSLSA 215
           + GK  LVDLAG+E+ + T +       E   INKSL A
Sbjct: 278 MHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLA 316

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387

 Score = 61.1 bits (149), Expect = 5e-10
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 1   MSNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE----------ENGL 50
           +  +     +   E  I V  R RPLN  E       ++  PS             +   
Sbjct: 37  LECHPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTK 96

Query: 51  SLGGKFYLFDKVFKPNATQEKVYDEAAKSIV 81
            L  + + FD  F   A+ E VY   A+ +V
Sbjct: 97  YLENQAFCFDFAFDETASNEVVYRFTARPLV 127

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410

 Score =  120 bits (304), Expect = 1e-29
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
           +   G  E  V   ++V ++I  G A R    T  N +SSRSH+ F I ++ +      +
Sbjct: 243 VQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG-----R 297

Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVL-DEAKNINKSLSA 215
           L GK  LVDLAG+E+ + T +       E   INKSL A
Sbjct: 298 LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLA 336

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410

 Score = 61.1 bits (149), Expect = 5e-10
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 1   MSNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE----------ENGL 50
           M  +     +   E  I V  R RPLN  E       ++  PS             +   
Sbjct: 57  MECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTK 116

Query: 51  SLGGKFYLFDKVFKPNATQEKVYDEAAKSIV 81
            L  + + FD  F   A+ E VY   A+ +V
Sbjct: 117 YLENQAFCFDFAFDETASNEVVYRFTARPLV 147

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 63/379 (16%), Positives = 146/379 (38%), Gaps = 59/379 (15%)

Query: 271  RLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGG 330
              L +T ER+++A  +LK LE    ++   L   + L  + LQA  +    AEE      
Sbjct: 864  EELQRTKERQQKAEAELKELE----QKHTQLCEEKNLLQEKLQAETELYAEAEEMRV--- 916

Query: 331  SLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDY 390
                  K   LE  L ++    ++    +  L+ E  K+++++                 
Sbjct: 917  --RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD----------LEEQL 964

Query: 391  EQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 450
            E+ +    +L  E  +A  ++K++      D   ++ +  +LT+E +  +E V ++   L
Sbjct: 965  EEEEAARQKLQLEKVTADGKIKKM----EDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020

Query: 451  EELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEML 510
             E     ++K++ +     + E++  EL ++      +  EL++IK     +   ++E +
Sbjct: 1021 AEE----EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQI 1076

Query: 511  TNLLKDLCEIGLVIGS-EGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVN 569
              L   + E+   +   E +++       +LE+E +     + K++        E    +
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALA---RLEDETSQKNNALKKIR------ELESHISD 1127

Query: 570  LADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDE 629
            L + ++   +     E                       +++ L EE E L  +L++  +
Sbjct: 1128 LQEDLESEKAARNKAEK----------------------QKRDLSEELEALKTELEDTLD 1165

Query: 630  EINQQSQYAEKLKEQIMEQ 648
                Q +      +   ++
Sbjct: 1166 TTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.8 bits (189), Expect = 1e-14
 Identities = 46/302 (15%), Positives = 113/302 (37%), Gaps = 20/302 (6%)

Query: 220  KLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNER 279
            + +E    A   + +++ +   L      ++     E +   E E+     RL  +  E 
Sbjct: 868  RTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV--RLAAKKQEL 925

Query: 280  REQARKDLKGLEDTVTKELQTLHNLRKLF---VQDLQARI---KKSVTAEESEDDGGSLA 333
             E   +    +E+   +  Q L   +K     + DL+ ++   + +    + E     + 
Sbjct: 926  EEILHEMEARIEEE-EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE----KVT 980

Query: 334  QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQL 393
               KI  +E+++  +   + +L ++   L   +  L   L    E+ K +T  +  +E +
Sbjct: 981  ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040

Query: 394  QGEM-------TRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 446
              E+        +  QE E  K +++   +       +LQ ++  L  +    +EE++  
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100

Query: 447  LQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRI 506
            L  LE+     +   +++         L E+L  ++   N    + + + +     K  +
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160

Query: 507  NE 508
             +
Sbjct: 1161 ED 1162

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 52/353 (14%), Positives = 129/353 (36%), Gaps = 42/353 (11%)

Query: 334  QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQL 393
               K++  E  +    +  ++          EL +LE++     E   L+    +   +L
Sbjct: 848  PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907

Query: 394  QGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEL 453
              E   +     + K+E++E++       E+ +    +L  E +  ++++ ++ + LEE 
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967

Query: 454  AVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNL 513
                 +   E  T + + + + +++ + +   N  + E           +K + E +++L
Sbjct: 968  EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE-----------RKLLEERVSDL 1016

Query: 514  LKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVN--LA 571
              +L E       E   K  +    K E   +   + + K +    E  K   ++    +
Sbjct: 1017 TTNLAE------EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070

Query: 572  DPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEI 631
            D  +  A +                            +  K EEE +    +L+++  + 
Sbjct: 1071 DLHEQIAELQAQIAEL-------------------KAQLAKKEEELQAALARLEDETSQK 1111

Query: 632  NQQSQYAEKLKEQIME-QEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQ 683
            N   +   +L+  I + QE++           + E+ ++DL    + +  EL+
Sbjct: 1112 NNALKKIRELESHISDLQEDLESE---KAARNKAEKQKRDLSEELEALKTELE 1161

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.8 bits (150), Expect = 7e-10
 Identities = 43/271 (15%), Positives = 94/271 (34%), Gaps = 16/271 (5%)

Query: 220  KLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRL-LLQTNE 278
            +LEE        I + +   + L A    M+    +  ++  E E    + +L  +  + 
Sbjct: 924  ELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG 983

Query: 279  RREQARKDLKGLEDTV---TKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQR 335
            + ++   D+  +ED     TKE + L         +L    +K+    + ++        
Sbjct: 984  KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN-----KHE 1038

Query: 336  QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYEQLQG 395
              IS LE  L +  K  ++L +    L  E   L +++    E    I   +    + + 
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQI---AELQAQIAELKAQLAKKEE 1095

Query: 396  EMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAV 455
            E+       E    +    +    +   +L+  ++ L ++ ES K    +  +   +L+ 
Sbjct: 1096 ELQAALARLEDETSQKNNAL----KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE 1151

Query: 456  NYDQKSQEVETKNKEFETLTEELTLKQTTLN 486
              +    E+E       T  E         +
Sbjct: 1152 ELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.0 bits (165), Expect = 7e-12
 Identities = 85/648 (13%), Positives = 183/648 (28%), Gaps = 210/648 (32%)

Query: 14  EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVY 73
           +D  + +         EE      I+        +G        LF  +    + QE++ 
Sbjct: 39  QDMPKSILS------KEE---IDHIIMSKD--AVSGT-----LRLFWTLL---SKQEEMV 79

Query: 74  DEAAKSIVSVQF---------------VDADQYMVSVDRLRSDHQLKASTMCEHSLMHLI 118
            +  + ++ + +               +    Y+   DRL +D+Q               
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--------------- 124

Query: 119 VFPGATERFVGKPEEVFEV---IEEGKANRHIAVTNM---------NEHSSRSHS----- 161
           VF    +  V + +   ++   + E +  +++ +  +          +    S+      
Sbjct: 125 VFA---KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD-VCLSYKVQCKM 180

Query: 162 ---VFLINVKQEN-----LENEKKLSGKL-----YLVDLAGSEKVSKTGAEGT------- 201
              +F +N+K  N     LE  +KL  ++        D + + K+     +         
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 202 --------VLD--------EAKNI---------NKSLSADGAGKLEEEFTVARLYISKMK 236
                   VL          A N+          K ++   +       ++    ++   
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 237 SEVKNLVARCTSMESSQ-AEEHKK----AIEYEKELGETRLLLQTNERREQARK-DLKGL 290
            EVK+L+ +           E        +     + E   +       +  +  +   L
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRL---SIIAE--SIRDGLATWDNWKHVNCDKL 355

Query: 291 EDTVTKELQTL--HNLRKLFVQDL-----QARIKKSV-----TAEESEDDGGSLAQRQKI 338
              +   L  L     RK+F   L      A I   +           D    + +  K 
Sbjct: 356 TTIIESSLNVLEPAEYRKMF-DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 339 SFLENNLDQLT-KVHKQLVRDNADLRCELPKLEKRLRATMERVKLIT--TARRDYEQLQG 395
           S +E    + T  +          +  EL K++      + R  ++      + ++    
Sbjct: 415 SLVEKQPKESTISIP--------SIYLEL-KVKLENEYALHR-SIVDHYNIPKTFDS--D 462

Query: 396 EMTRLTQENES--------AKEEVKELITTARR---DYEQLQGEMTRLTQENESAKEEVK 444
           ++     +              E  E +T  R    D+  L+ ++ R      +A   + 
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSIL 521

Query: 445 EVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKK 504
             LQ L+     Y           K +                       I D     ++
Sbjct: 522 NTLQQLK----FY-----------KPY-----------------------ICDNDPKYER 543

Query: 505 RINEMLTNLLKDLCEIGLVIGSEGDM---KVTSDGAGKLEEEFT-VAR 548
            +N +L  L K   E  L+     D+    + ++     EE    V R
Sbjct: 544 LVNAILDFLPK--IEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 7e-11
 Identities = 67/562 (11%), Positives = 161/562 (28%), Gaps = 178/562 (31%)

Query: 202 VLDEAKNINKSLSADGAGKLEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAI 261
           V D  K+I             EE      +I   K  V   +    ++ S Q E  +K +
Sbjct: 38  VQDMPKSILSK----------EEID----HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 262 EYEKELGETRLLLQTN-----ERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARI 316
           E          +L+ N        +  ++    +     ++   L+N       D Q   
Sbjct: 84  EE---------VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-------DNQVFA 127

Query: 317 KKSVTAEESEDDGGSLAQRQKISFLENNLDQLTK-----VH------KQ-LVRD---NAD 361
           K +V+  +                L   L +L       +       K  +  D   +  
Sbjct: 128 KYNVSRLQ------------PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 362 LRCELP--------KLEKRLRATMERV-KLITTARRDYEQLQGEMTRLTQENESAKEEVK 412
           ++C++         K        +E + KL+     ++       + +     S + E++
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 413 ELITTARRDYEQ----LQGEMTRLTQENESAKEEV--KEVLQALEELAVNYDQKSQE-VE 465
            L+    + YE     L                 V   +   A       ++   +  + 
Sbjct: 236 RLL--KSKPYENCLLVL---------------LNVQNAKAWNA-------FNLSCKILLT 271

Query: 466 TKNKEF-----ETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLTNLLKDLCEI 520
           T+ K+         T  ++L   ++  T  E++ +        K ++    +L +++   
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL------LLKYLDCRPQDLPREVLTT 325

Query: 521 G-LVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWR--NGETVKE--DEQVNLADPVD 575
               +    +     DG    +              W+  N + +    +  +N+ +P +
Sbjct: 326 NPRRLSIIAESI--RDGLATWDN-------------WKHVNCDKLTTIIESSLNVLEPAE 370

Query: 576 MAA---SIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEIN 632
                  ++  P SA       IP   L                   ++  + + D    
Sbjct: 371 YRKMFDRLSVFPPSAH------IPTILL-----------------SLIWFDVIKSDV--- 404

Query: 633 QQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVTKELQTLHNLRKLF 692
                       ++ +     L+      ++ +++   +  +   +  +L+  + L +  
Sbjct: 405 ----------MVVVNKLHKYSLV-----EKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 693 VQDQVTSSQRWPMATKPTSRTD 714
           V D     + +          D
Sbjct: 450 V-DHYNIPKTFDSDDLIPPYLD 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 65/235 (27%)

Query: 494 QIKDMSNHQKKRINEMLTNLLKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISK 553
           +  +     K  ++      + +            D K   D          + +  +SK
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNF-----------DCKDVQD----------MPKSILSK 48

Query: 554 MKWRNGETVKE-DEQVNLADPVDMAASIAPTPESAPASILPAIPGSGL------MLGSLS 606
                    +E D  +   D V     +  T  S    ++       L      ++  + 
Sbjct: 49  ---------EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 607 NEERQK------LEEERERLYQ--QLDEKDEEINQQSQYAEKLKEQIMEQEEVSGLLV-- 656
            E+RQ         E+R+RLY   Q+  K   +++   Y  KL++ ++E      +L+  
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPY-LKLRQALLELRPAKNVLIDG 157

Query: 657 ---CGQT-------NERREQARKDLK------GLEDTVTKELQTLHNLRKLFVQD 695
               G+T          + Q + D K         ++    L+ L  L      +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 65.1 bits (159), Expect = 5e-11
 Identities = 46/273 (16%), Positives = 102/273 (37%), Gaps = 33/273 (12%)

Query: 220  KLEEEFTVARLYISKMKSEVKNLVARCTSME------SSQAEEHKKAIEYEKELGETR-- 271
             + + +   R     +++ ++  + R           S   ++H +          T   
Sbjct: 830  VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889

Query: 272  -LLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGG 330
             + LQ   RR  A+++LK L+     E +++   +KL    L+ +I +            
Sbjct: 890  IVYLQCCYRRMMAKRELKKLKI----EARSVERYKKL-HIGLENKIMQ------------ 932

Query: 331  SLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDY 390
                ++KI         L +    L    +    +L    +RLR + E  K    A    
Sbjct: 933  ---LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAK---NATNRV 986

Query: 391  EQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 450
              LQ E+ +L +E    + E K +   A +   + +  ++ L ++N   K E +E+ + +
Sbjct: 987  LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRI 1046

Query: 451  EELA-VNYDQKSQEVETKNKEFETLTEELTLKQ 482
             + A    +   +++  + K+ E    +  L+ 
Sbjct: 1047 HDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 64.4 bits (157), Expect = 1e-10
 Identities = 47/252 (18%), Positives = 96/252 (38%), Gaps = 20/252 (7%)

Query: 272  LLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGS 331
            +++Q  +R    RK  + + D        L          +  R  KS+  ++     G 
Sbjct: 820  IIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVR--GW 877

Query: 332  LAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKLITTARRDYE 391
            LA+      L+  +       + + +          +  K+L+     V+         E
Sbjct: 878  LARVHYHRTLKAIVYLQCCYRRMMAK----------RELKKLKIEARSVERYKKLHIGLE 927

Query: 392  ----QLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 447
                QLQ ++    +E +S  E++  L  T   + E+L+ ++ RL    E AK     VL
Sbjct: 928  NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987

Query: 448  QALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRIN 507
               EE+A    +  +E+     E +T+ E     +       +EL++   +   +K+ +N
Sbjct: 988  SLQEEIA----KLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043

Query: 508  EMLTNLLKDLCE 519
              + +  K++ E
Sbjct: 1044 RRIHDQAKEITE 1055

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 45.2 bits (105), Expect = 6e-05
 Identities = 28/208 (13%), Positives = 66/208 (31%), Gaps = 11/208 (5%)

Query: 250 ESSQAEEHKKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFV 309
           E ++ E+      Y ++L E     +    +      ++        E + +  L     
Sbjct: 47  ERARIEK-----AYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVK 101

Query: 310 QDLQARIKKSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKL 369
             L     + +   + E     +    K    +   D   K  K   +   ++       
Sbjct: 102 ASLMNDDFEKIKNWQKEAFHKQMMGGFKE--TKEAEDGFRKAQKPWAKKLKEVEAAKKAH 159

Query: 370 EKRLRATMERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEM 429
               +     +     ++ D      ++ +L  + E  K++V +     +  YE+   E+
Sbjct: 160 HAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLK----TKEKYEKSLKEL 215

Query: 430 TRLTQENESAKEEVKEVLQALEELAVNY 457
            + T +     E+V E  Q  EE  + +
Sbjct: 216 DQGTPQYMENMEQVFEQCQQFEEKRLRF 243

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 28/228 (12%), Positives = 68/228 (29%), Gaps = 29/228 (12%)

Query: 258  KKAIEYEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTLHNLRKLFVQDLQARIK 317
            K+A    ++ G++   +Q+     +  K  +       +E+  L  +       L+   +
Sbjct: 785  KQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKG--QEVSELEAIYNSLQTKLRLIKR 842

Query: 318  KSVTAEESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATM 377
            +   A          +    +   E    +  ++  +  +  A L  +  ++ K+L    
Sbjct: 843  EPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLEN-W 901

Query: 378  ERVKLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENE 437
               K +     +       +    +  E+   E + L   +  D   +  ++T L     
Sbjct: 902  ATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGV 961

Query: 438  SAKEEVK--------------------------EVLQALEELAVNYDQ 459
                E K                          E LQ +E+L  ++  
Sbjct: 962  PELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.7 bits (94), Expect = 4e-04
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 15/45 (33%)

Query: 334 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATME 378
           ++Q +  L+ +L    K++     D+A      P L   ++ATME
Sbjct: 18  EKQALKKLQASL----KLYAD---DSA------PALA--IKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	720
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	100.0
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	100.0
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	100.0
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	100.0
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	100.0
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	100.0
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	100.0
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	100.0
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	100.0
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	100.0
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	100.0
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	100.0
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	100.0
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	100.0
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	100.0
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	100.0
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	100.0
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	100.0
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	100.0
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	100.0
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	100.0
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	100.0
3nwn_A	359	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	100.0
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	100.0
3u06_A	412	Protein claret segregational; motor domain, stalk	100.0
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	100.0
4h1g_A	715	Maltose binding protein-cakar3 motor domain fusio;	100.0
2kin_B	100	Kinesin; motor protein, cytoskeleton; HET: ADP; 2.	99.87
3kin_B	117	Kinesin heavy chain; motor protein, cytoskeleton;	99.86
2o0a_A	298	S.cerevisiae chromosome XVI reading frame ORF YPL2	99.07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.2
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.99
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.32
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.28
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.95
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.74
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.27
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	93.9
4b6x_A	90	AVRRPS4, avirulence protein; toxin, type 3 secrete	93.31
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.01
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	92.92
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	92.74
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	91.6
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	91.41
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	91.23
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	90.8
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	90.29
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	90.07
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.63
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	87.36
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	87.34
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	84.27
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	84.21
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	84.0
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	83.82
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	83.62
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	82.47
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	82.31
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	82.1
3s84_A	273	Apolipoprotein A-IV; four helix bundle, transport	81.75
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	81.2
3r2p_A	185	Apolipoprotein A-I; amphipathic alpha-helix, major	80.58

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*

Probab=100.00  E-value=1.3e-65  Score=558.44  Aligned_cols=272  Identities=60%  Similarity=0.800  Sum_probs=234.7

Q ss_pred             cCCCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeCCeeeecceecCCCCChHHHHHHhhhhcceeeecC-
Q psy5718           9 REIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD-   87 (720)
Q Consensus         9 ~~~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G-   87 (720)
                      |+.+.+++|+|+|||||+++.|...+...++.++++.....+.++++.|.||+||+++++|++||+.++.|+|+++|+| 
T Consensus         5 ~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~   84 (365)
T 2y65_A            5 REIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGY   84 (365)
T ss_dssp             ---CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTC
T ss_pred             ccCCCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEECCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCC
Confidence            4566789999999999999999888888889888764445788899999999999999999999999999999999999 


Q ss_pred             -----------------------CCCceeehhhhhhhhhhhhhhcccccceeE---------------------------
Q psy5718          88 -----------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL---------------------------  117 (720)
Q Consensus        88 -----------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v---------------------------  117 (720)
                                             ++..+|||||++.+||..+........|.+                           
T Consensus        85 n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e  164 (365)
T 2y65_A           85 NGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHE  164 (365)
T ss_dssp             CEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBCEEE
T ss_pred             ceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCceEEE
Confidence                                   245689999999999999987655554444                           


Q ss_pred             -----EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCcc
Q psy5718         118 -----IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK  192 (720)
Q Consensus       118 -----~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr  192 (720)
                           +||+|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|.+.+...+....|+|+|||||||||
T Consensus       165 ~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr  244 (365)
T 2y65_A          165 DKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEK  244 (365)
T ss_dssp             CSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCC
T ss_pred             CCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEEEECCCCCc
Confidence                 799999999999999999999999999999999999999999999999999998888888899999999999999


Q ss_pred             cccCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccccCCcccHHHHHhHH
Q psy5718         193 VSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAI  261 (720)
Q Consensus       193 ~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL  261 (720)
                      ++++++.|.+++|+.+||+||++||+|  +|+++. .||||||||||+||||        +||+||||+..+++||++||
T Consensus       245 ~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL  324 (365)
T 2y65_A          245 VSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTL  324 (365)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHHH
T ss_pred             chhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHHHHH
Confidence            999999999999999999999999999  999875 8999999999999999        89999999999999999999


Q ss_pred             HHHHHhccccccchhhhHH
Q psy5718         262 EYEKELGETRLLLQTNERR  280 (720)
Q Consensus       262 ~fa~rak~Ikn~~~vN~~~  280 (720)
                      +||.||+.|+|.|.+|...
T Consensus       325 ~fA~rak~I~n~~~~n~~~  343 (365)
T 2y65_A          325 DFGRRAKTVKNVVCVNEEL  343 (365)
T ss_dssp             HHHHHHTTCEEECCCEEEC
T ss_pred             HHHHHHhcccCcceeCCCC
Confidence            9999999999999999854

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*

Probab=100.00  E-value=2.6e-63  Score=533.34  Aligned_cols=259  Identities=49%  Similarity=0.668  Sum_probs=240.9

Q ss_pred             cCCCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeCCeeeecceecCCCCChHHHHHHhhhhcceeeecC-
Q psy5718           9 REIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD-   87 (720)
Q Consensus         9 ~~~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G-   87 (720)
                      |+++.+++|+|+|||||+++.|...++..++.+++++   ++.++++.|.||+||+++++|++||+.++.|+|+++|+| 
T Consensus         1 ~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~---~~~~~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~   77 (325)
T 1bg2_A            1 MADLAECNIKVMCRFRPLNESEVNRGDKYIAKFQGED---TVVIASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGY   77 (325)
T ss_dssp             --CCSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTT---EEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTC
T ss_pred             CCCCCCCCEEEEEEcCCCChhHhccCCeeEEEECCCC---eEEECCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCC
Confidence            3566789999999999999999988888888888776   788889999999999999999999999999999999999 


Q ss_pred             -----------------------CCCceeehhhhhhhhhhhhhhcccccceeE---------------------------
Q psy5718          88 -----------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL---------------------------  117 (720)
Q Consensus        88 -----------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v---------------------------  117 (720)
                                             ++..+|||||++.+||..+........|.+                           
T Consensus        78 n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e  157 (325)
T 1bg2_A           78 NGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHE  157 (325)
T ss_dssp             CEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEE
T ss_pred             eEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCceEEE
Confidence                                   245679999999999999977655544443                           


Q ss_pred             -----EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCcc
Q psy5718         118 -----IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK  192 (720)
Q Consensus       118 -----~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr  192 (720)
                           +||+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+........|+|+|||||||||
T Consensus       158 ~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVDLAGSEr  237 (325)
T 1bg2_A          158 DKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEK  237 (325)
T ss_dssp             CTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSCC
T ss_pred             CCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEECCCCCc
Confidence                 799999999999999999999999999999999999999999999999999998887788899999999999999


Q ss_pred             cccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHH
Q psy5718         193 VSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIE  262 (720)
Q Consensus       193 ~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~  262 (720)
                      ++++++.|.+++|+.+||+||++||+|  +|+++..|||||||||||||||        +||+||||+..+++||++||+
T Consensus       238 ~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL~  317 (325)
T 1bg2_A          238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLL  317 (325)
T ss_dssp             CCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHH
T ss_pred             ccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHHHH
Confidence            999999999999999999999999999  9999999999999999999999        899999999999999999999


Q ss_pred             HHHHhccc
Q psy5718         263 YEKELGET  270 (720)
Q Consensus       263 fa~rak~I  270 (720)
                      ||+|||+|
T Consensus       318 fa~rak~I  325 (325)
T 1bg2_A          318 FGQRAKTI  325 (325)
T ss_dssp             HHHTSCCC
T ss_pred             HHHHhccC
Confidence            99999987

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9

Probab=100.00  E-value=1.7e-62  Score=532.58  Aligned_cols=263  Identities=32%  Similarity=0.426  Sum_probs=242.5

Q ss_pred             CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC----CeeeecceecCCCCChHHHHHHhhhhcceeeecC--
Q psy5718          14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG----GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD--   87 (720)
Q Consensus        14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~----~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G--   87 (720)
                      .++|+|+|||||+++.|...+...++.++++.   .+.+.    .+.|.||+||+++++|++||+.++.|+|+++|+|  
T Consensus         5 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~---~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n   81 (355)
T 1goj_A            5 ANSIKVVARFRPQNRVEIESGGQPIVTFQGPD---TCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYN   81 (355)
T ss_dssp             SCBCEEEEEECCCCHHHHTTTCCBCEEECSTT---EEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCC
T ss_pred             CCCeEEEEECCCCChHHhhcCCceEEEEcCCC---eEEEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCc
Confidence            58999999999999999888888889888776   33332    4789999999999999999999999999999999  


Q ss_pred             -----------------------CCCceeehhhhhhhhhhhhhhcccccceeE---------------------------
Q psy5718          88 -----------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL---------------------------  117 (720)
Q Consensus        88 -----------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v---------------------------  117 (720)
                                             ++..+|||||++.+||..+........|.+                           
T Consensus        82 ~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e  161 (355)
T 1goj_A           82 GTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHE  161 (355)
T ss_dssp             EEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEE
T ss_pred             ceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeEE
Confidence                                   135689999999999999876554444433                           


Q ss_pred             -----EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCcc
Q psy5718         118 -----IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK  192 (720)
Q Consensus       118 -----~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr  192 (720)
                           +||+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+..++....|+|+|||||||||
T Consensus       162 ~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr  241 (355)
T 1goj_A          162 EKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEK  241 (355)
T ss_dssp             ETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCSC
T ss_pred             cCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEECCCCCc
Confidence                 899999999999999999999999999999999999999999999999999998888888899999999999999


Q ss_pred             cccCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccccCCcccHHHHHhHH
Q psy5718         193 VSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAI  261 (720)
Q Consensus       193 ~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL  261 (720)
                      ++++++.|.+++|+.+||+||++||+|  +|+++. .|||||||||||||||        +||+||||+..+++||++||
T Consensus       242 ~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL  321 (355)
T 1goj_A          242 VGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTL  321 (355)
T ss_dssp             CTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHH
T ss_pred             ccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHHH
Confidence            999999999999999999999999999  999875 8999999999999999        89999999999999999999


Q ss_pred             HHHHHhccccccchhhhH
Q psy5718         262 EYEKELGETRLLLQTNER  279 (720)
Q Consensus       262 ~fa~rak~Ikn~~~vN~~  279 (720)
                      +||+|||.|+|.|.+|..
T Consensus       322 ~fA~rak~I~n~~~vn~~  339 (355)
T 1goj_A          322 RFGMRAKSIKNKAKVNAE  339 (355)
T ss_dssp             HHHHHHHTCBCCCCCCSS
T ss_pred             HHHHHHhhccCCceeCCC
Confidence            999999999999999983

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*

Probab=100.00  E-value=1.2e-62  Score=535.56  Aligned_cols=276  Identities=28%  Similarity=0.316  Sum_probs=243.7

Q ss_pred             CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-----CCeeeecceecCCCCChHHHHHHhhhhcceeeecC-
Q psy5718          14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-----GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD-   87 (720)
Q Consensus        14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-----~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G-   87 (720)
                      +++|+|+|||||+++.|...+...++...+..   ++..     ..+.|.||+||+++++|++||+. +.|+|+++|+| 
T Consensus         4 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~---~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~   79 (369)
T 3cob_A            4 KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEF---TVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGY   79 (369)
T ss_dssp             CCBCEEEEEECCCCHHHHHTTCCBCEEECSSS---EEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTC
T ss_pred             CCCeEEEEECCCCChhhccCCCcEEEEcCCcE---EEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCC
Confidence            58999999999999999776665444333221   3322     13789999999999999999999 69999999999 


Q ss_pred             --------------------CCCceeehhhhhhhhhhhhhhcccccceeE------------------------------
Q psy5718          88 --------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL------------------------------  117 (720)
Q Consensus        88 --------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v------------------------------  117 (720)
                                          ++..+|||||++.+||..+......+.|.+                              
T Consensus        80 n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e  159 (369)
T 3cob_A           80 NVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKK  159 (369)
T ss_dssp             EEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEE
T ss_pred             ceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEE
Confidence                                567899999999999999876544333332                              


Q ss_pred             -----EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCcc
Q psy5718         118 -----IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK  192 (720)
Q Consensus       118 -----~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr  192 (720)
                           ++|+|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|.+.+..++....|+|+|||||||||
T Consensus       160 ~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSEr  239 (369)
T 3cob_A          160 DSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSER  239 (369)
T ss_dssp             CTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSSC
T ss_pred             CCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCCCCCc
Confidence                 799999999999999999999999999999999999999999999999999998888888899999999999999


Q ss_pred             cccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHH
Q psy5718         193 VSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIE  262 (720)
Q Consensus       193 ~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~  262 (720)
                      +.++++.|.+++|+.+||+||++||+|  +|+++..|||||||||||||||        +||+||||+..+++||++||+
T Consensus       240 ~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLr  319 (369)
T 3cob_A          240 VKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLT  319 (369)
T ss_dssp             CCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHH
T ss_pred             ccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHH
Confidence            999999999999999999999999999  9999999999999999999999        899999999999999999999


Q ss_pred             HHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         263 YEKELGETRLLLQTNERREQARKDLKGLEDTVTKELQTL  301 (720)
Q Consensus       263 fa~rak~Ikn~~~vN~~~~~~~~~Lk~ei~~Lk~EL~~l  301 (720)
                      ||+||+.|+|.|.+|...        .+|..|+.++..|
T Consensus       320 fA~rak~i~~~~~~n~~~--------~ei~~L~~~l~~~  350 (369)
T 3cob_A          320 YASRVRSIVNDPSKNVSS--------KEVARLKKLVSYW  350 (369)
T ss_dssp             HHHHHHTCBCCCCCCEEC--------HHHHHHHHHTTCC
T ss_pred             HHHHHhhcccCCcccCCH--------HHHHHHHHHHHHH
Confidence            999999999999999976        3455555555444

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}

Probab=100.00  E-value=2.7e-62  Score=529.73  Aligned_cols=267  Identities=27%  Similarity=0.352  Sum_probs=212.4

Q ss_pred             CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee------------CCeeeecceecCCCCChHHHHHHhhhhcc
Q psy5718          14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL------------GGKFYLFDKVFKPNATQEKVYDEAAKSIV   81 (720)
Q Consensus        14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~------------~~k~F~FD~VF~~~asQeeVY~~~~~plV   81 (720)
                      .++|+|+|||||+++.|...+...++.++++.....+..            ..+.|.||+||+++++|++||+.++.|+|
T Consensus         3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv   82 (350)
T 2vvg_A            3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI   82 (350)
T ss_dssp             -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred             CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence            478999999999999998888887887765432222211            14789999999999999999999999999


Q ss_pred             eeeecC---------------------CCCceeehhhhhhhhhhhhhhcccccceeE-----------------------
Q psy5718          82 SVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL-----------------------  117 (720)
Q Consensus        82 ~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v-----------------------  117 (720)
                      +++|+|                     ++..+|||||++.+||..+........|.+                       
T Consensus        83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~l~  162 (350)
T 2vvg_A           83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLP  162 (350)
T ss_dssp             HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTEEEEC
T ss_pred             HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCCcCce
Confidence            999999                     567899999999999999975444444333                       


Q ss_pred             --------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCc--ccccceeeeeec
Q psy5718         118 --------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENE--KKLSGKLYLVDL  187 (720)
Q Consensus       118 --------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~--~~~~skL~lVDL  187 (720)
                              +||+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+...+  ....|+|+||||
T Consensus       163 i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lVDL  242 (350)
T 2vvg_A          163 LKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDL  242 (350)
T ss_dssp             EEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEEEEC
T ss_pred             eeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEEEeC
Confidence                    8999999999999999999999999999999999999999999999999998765433  356799999999


Q ss_pred             cCCcccccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHH
Q psy5718         188 AGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEH  257 (720)
Q Consensus       188 AGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ET  257 (720)
                      |||||++++++.|.+++|+.+||+||++||+|  +|+++..|||||||||||||||        +||+||||+..+++||
T Consensus       243 AGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ET  322 (350)
T 2vvg_A          243 AGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDET  322 (350)
T ss_dssp             CCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHH
T ss_pred             CCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHH
Confidence            99999999999999999999999999999999  9999999999999999999999        8999999999999999


Q ss_pred             HhHHHHHHHhccccccchhhhHH
Q psy5718         258 KKAIEYEKELGETRLLLQTNERR  280 (720)
Q Consensus       258 lsTL~fa~rak~Ikn~~~vN~~~  280 (720)
                      ++||+||.||+.|+|.|.+|+++
T Consensus       323 l~TL~fA~rak~i~n~~~~n~~~  345 (350)
T 2vvg_A          323 MSTLRYADRAKQIKNKPRINEDP  345 (350)
T ss_dssp             HHHHHHHHHHTTCBCCCCCCBSC
T ss_pred             HHHHHHHHHHhhccccceecCCc
Confidence            99999999999999999999743

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*

Probab=100.00  E-value=6e-62  Score=530.25  Aligned_cols=272  Identities=28%  Similarity=0.332  Sum_probs=223.6

Q ss_pred             cCCCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------CCeeeecceecCCCCChHHHHHHhhhhcc
Q psy5718           9 REIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------GGKFYLFDKVFKPNATQEKVYDEAAKSIV   81 (720)
Q Consensus         9 ~~~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------~~k~F~FD~VF~~~asQeeVY~~~~~plV   81 (720)
                      ......++|+|+|||||+++.|...+...++.++++.....+..       ..+.|.||+||+++++|++||+.++.|+|
T Consensus        15 ~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv   94 (372)
T 3b6u_A           15 YFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLV   94 (372)
T ss_dssp             ------CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHH
T ss_pred             ccCCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHH
Confidence            34466789999999999999998888888888766543222221       24789999999999999999999999999


Q ss_pred             eeeecC------------------------CCCceeehhhhhhhhhhhhhhcccccceeE--------------------
Q psy5718          82 SVQFVD------------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL--------------------  117 (720)
Q Consensus        82 ~~vl~G------------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v--------------------  117 (720)
                      +++|+|                        ++..+|||||++.+||..+... ....|.+                    
T Consensus        95 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~  173 (372)
T 3b6u_A           95 DSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRS-QNQQYLVRASYLEIYQEEIRDLLSKDQ  173 (372)
T ss_dssp             HHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTC-SSCEEEEEEEEEEEETTEEEETTSSCT
T ss_pred             HHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhc-cCCceEEEEEEEEEeCCEEEECCCCCC
Confidence            999999                        2356799999999999998752 2222222                    


Q ss_pred             -------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC---Ccccccce
Q psy5718         118 -------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---NEKKLSGK  181 (720)
Q Consensus       118 -------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~---~~~~~~sk  181 (720)
                                   +||+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+..   ......|+
T Consensus       174 ~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~sk  253 (372)
T 3b6u_A          174 TKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGK  253 (372)
T ss_dssp             TCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEE
T ss_pred             CCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEE
Confidence                         89999999999999999999999999999999999999999999999999987643   23466799


Q ss_pred             eeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccccCC
Q psy5718         182 LYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTSME  250 (720)
Q Consensus       182 L~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iSPs  250 (720)
                      |+|||||||||++++++.|.+++|+.+||+||++||+|  ||+++. .|||||||||||||||        +||+||||+
T Consensus       254 L~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~  333 (372)
T 3b6u_A          254 LNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPA  333 (372)
T ss_dssp             EEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCB
T ss_pred             EEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCc
Confidence            99999999999999999999999999999999999999  998876 7999999999999999        999999999


Q ss_pred             cccHHHHHhHHHHHHHhccccccchhhhHHH
Q psy5718         251 SSQAEEHKKAIEYEKELGETRLLLQTNERRE  281 (720)
Q Consensus       251 ~~~~~ETlsTL~fa~rak~Ikn~~~vN~~~~  281 (720)
                      ..+++||++||+||.||++|+|.|.+|.+..
T Consensus       334 ~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~  364 (372)
T 3b6u_A          334 SYNVEETLTTLRYANRAKNIKNKPRVNEDPK  364 (372)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCBCCCCCCC---
T ss_pred             ccCHHHHHHHHHHHHHHhhccccceecCChH
Confidence            9999999999999999999999999999654

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.7e-61  Score=526.99  Aligned_cols=271  Identities=23%  Similarity=0.270  Sum_probs=192.3

Q ss_pred             CCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-----CCeeeecceecCCCCChHHHHHHhhhhcceeee
Q psy5718          11 IAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-----GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQF   85 (720)
Q Consensus        11 ~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-----~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl   85 (720)
                      .+..++|+|+|||||+++.|...+...|+...++.. ..+..     ..+.|.||+||+++++|++||+.++.|+|+++|
T Consensus        17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~-~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l   95 (388)
T 3bfn_A           17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCS-LEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLL   95 (388)
T ss_dssp             SSCCCCCEEEEEECCCC------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHT
T ss_pred             cCCCCCEEEEEECCCCChhhhccCCCceEEecCCCe-EEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhh
Confidence            456789999999999999987766666665443331 11111     236899999999999999999999999999999


Q ss_pred             cC---------------------CCCceeehhhhhhhhhhhhhhcc---cccceeE------------------------
Q psy5718          86 VD---------------------ADQYMVSVDRLRSDHQLKASTMC---EHSLMHL------------------------  117 (720)
Q Consensus        86 ~G---------------------~~~~~GIIpRav~~LF~~i~~~~---~~~~~~v------------------------  117 (720)
                      +|                     ++..+|||||++.+||..+....   ..+.|.+                        
T Consensus        96 ~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~  175 (388)
T 3bfn_A           96 EGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLV  175 (388)
T ss_dssp             TTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBCC
T ss_pred             cCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCCce
Confidence            99                     56789999999999999987532   2223322                        


Q ss_pred             --------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC-cccccceeeeeecc
Q psy5718         118 --------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN-EKKLSGKLYLVDLA  188 (720)
Q Consensus       118 --------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~-~~~~~skL~lVDLA  188 (720)
                              +||+|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|.+.+... .....|+|+|||||
T Consensus       176 ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~skL~lVDLA  255 (388)
T 3bfn_A          176 IREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLA  255 (388)
T ss_dssp             CEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEEEEEEEEECC
T ss_pred             EEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEEEEEEECC
Confidence                    899999999999999999999999999999999999999999999999999876543 34578999999999


Q ss_pred             CCcccccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHH
Q psy5718         189 GSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHK  258 (720)
Q Consensus       189 GSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETl  258 (720)
                      ||||..++++.|.+++|+.+||+||++||+|  +|+++..|||||||||||||||        +||+||||+..+++||+
T Consensus       256 GSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETl  335 (388)
T 3bfn_A          256 GSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTV  335 (388)
T ss_dssp             CTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHH
T ss_pred             CCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHHH
Confidence            9999999999999999999999999999999  9999999999999999999999        89999999999999999


Q ss_pred             hHHHHHHHhccccccchhhhHHHH
Q psy5718         259 KAIEYEKELGETRLLLQTNERREQ  282 (720)
Q Consensus       259 sTL~fa~rak~Ikn~~~vN~~~~~  282 (720)
                      +||+||+||+.|+|.|.+|+....
T Consensus       336 sTLrfA~rak~I~n~p~~n~~~~~  359 (388)
T 3bfn_A          336 SALNFAARSKEVINRPFTNESLQP  359 (388)
T ss_dssp             HHHHHHCSEEEEC-----------
T ss_pred             HHHHHHHHHhhCcCcCcccCCCCH
Confidence            999999999999999999995543

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...

Probab=100.00  E-value=1.7e-61  Score=525.77  Aligned_cols=268  Identities=29%  Similarity=0.338  Sum_probs=215.5

Q ss_pred             CCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------CCeeeecceecCCCCChHHHHHHhhhhccee
Q psy5718          11 IAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------GGKFYLFDKVFKPNATQEKVYDEAAKSIVSV   83 (720)
Q Consensus        11 ~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------~~k~F~FD~VF~~~asQeeVY~~~~~plV~~   83 (720)
                      ....++|+|+|||||+++.|...+...++.+++......+..       ..+.|.||+||+++++|++||+.++.|+|++
T Consensus         4 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~   83 (359)
T 1x88_A            4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDE   83 (359)
T ss_dssp             -----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHH
Confidence            355689999999999999998888888888776653333322       2478999999999999999999999999999


Q ss_pred             eecC---------------------CC-----------CceeehhhhhhhhhhhhhhcccccceeE--------------
Q psy5718          84 QFVD---------------------AD-----------QYMVSVDRLRSDHQLKASTMCEHSLMHL--------------  117 (720)
Q Consensus        84 vl~G---------------------~~-----------~~~GIIpRav~~LF~~i~~~~~~~~~~v--------------  117 (720)
                      +|+|                     +.           ..+|||||++.+||..+......+.+.+              
T Consensus        84 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL  163 (359)
T 1x88_A           84 VIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL  163 (359)
T ss_dssp             HHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEEETT
T ss_pred             HhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEEeCceeeehh
Confidence            9999                     11           1369999999999998865322111111              


Q ss_pred             ---------------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC---
Q psy5718         118 ---------------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---  173 (720)
Q Consensus       118 ---------------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~---  173 (720)
                                           +||+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+....   
T Consensus       164 ~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~  243 (359)
T 1x88_A          164 NPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG  243 (359)
T ss_dssp             CTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTS
T ss_pred             cccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCC
Confidence                                 78999999999999999999999999999999999999999999999999876542   


Q ss_pred             CcccccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hh
Q psy5718         174 NEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LV  243 (720)
Q Consensus       174 ~~~~~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~m  243 (720)
                      ......|+|+|||||||||++++++.|.+++|+.+||+||++||+|  ||+++..|||||||||||||||        +|
T Consensus       244 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~m  323 (359)
T 1x88_A          244 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSI  323 (359)
T ss_dssp             CEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSEEEE
T ss_pred             CceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCCeEEE
Confidence            2235679999999999999999999999999999999999999999  9999999999999999999999        89


Q ss_pred             hccccCCcccHHHHHhHHHHHHHhccccccchhhh
Q psy5718         244 ARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE  278 (720)
Q Consensus       244 I~~iSPs~~~~~ETlsTL~fa~rak~Ikn~~~vN~  278 (720)
                      |+||||+..+++||++||+||+|||+|+|.|.+|+
T Consensus       324 Ia~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~  358 (359)
T 1x88_A          324 IATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ  358 (359)
T ss_dssp             EEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred             EEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence            99999999999999999999999999999999996

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}

Probab=100.00  E-value=4.7e-61  Score=520.17  Aligned_cols=264  Identities=28%  Similarity=0.354  Sum_probs=223.8

Q ss_pred             CCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceee--eCCeeeecceecCCCCChHHHHHHhhhhcceeeecC---
Q psy5718          13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLS--LGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD---   87 (720)
Q Consensus        13 ~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~--~~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G---   87 (720)
                      ..++|+|+|||||+++.|...+...++.+..++.  .+.  .+.+.|.||+||+++++|++||+.++.|+|+++|+|   
T Consensus         2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~--~i~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~   79 (349)
T 1t5c_A            2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNN--VIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNG   79 (349)
T ss_dssp             -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETT--EEEETTSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCE
T ss_pred             CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCC--eEEECCCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCcc
Confidence            4689999999999999997766655554443331  232  245899999999999999999999999999999999   


Q ss_pred             ------------------CCCceeehhhhhhhhhhhhhhcccccceeE--------------------------------
Q psy5718          88 ------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL--------------------------------  117 (720)
Q Consensus        88 ------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v--------------------------------  117 (720)
                                        ++..+|||||++.+||..+..... ..|.+                                
T Consensus        80 tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~-~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~  158 (349)
T 1t5c_A           80 TIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPD-REFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVN  158 (349)
T ss_dssp             EEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTT-EEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTT
T ss_pred             ceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcC-CcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCC
Confidence                              567899999999999999875321 12211                                


Q ss_pred             --EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC-----cccccceeeeeeccCC
Q psy5718         118 --IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN-----EKKLSGKLYLVDLAGS  190 (720)
Q Consensus       118 --~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~-----~~~~~skL~lVDLAGS  190 (720)
                        +||+|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|.+.+...     +....|+|+|||||||
T Consensus       159 ~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGS  238 (349)
T 1t5c_A          159 RNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGS  238 (349)
T ss_dssp             TEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCG
T ss_pred             CCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCC
Confidence              899999999999999999999999999999999999999999999999999876543     2456799999999999


Q ss_pred             cccccCCCcccchHHhhhhccCCccccCc--ccccCC--cccccccchhhhhhhh--------hhhccccCCcccHHHHH
Q psy5718         191 EKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF--TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHK  258 (720)
Q Consensus       191 Er~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~--~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETl  258 (720)
                      ||++++++.|.+++|+.+||+||++||+|  +|+++.  .|||||||||||||||        +||+||||+  +++||+
T Consensus       239 Er~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETl  316 (349)
T 1t5c_A          239 ERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETL  316 (349)
T ss_dssp             GGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHH
T ss_pred             ccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHH
Confidence            99999999999999999999999999999  998875  6999999999999999        899999997  589999


Q ss_pred             hHHHHHHHhccccccchhhhHHH
Q psy5718         259 KAIEYEKELGETRLLLQTNERRE  281 (720)
Q Consensus       259 sTL~fa~rak~Ikn~~~vN~~~~  281 (720)
                      +||+||+|||.|+|.|.+|+...
T Consensus       317 sTL~fA~rak~I~n~~~vn~~~~  339 (349)
T 1t5c_A          317 TALQFASTAKYMKNTPYVNEVST  339 (349)
T ss_dssp             HHHHHHHHHTTCCCCCCCCEEC-
T ss_pred             HHHHHHHHHhhcccCceeccCCC
Confidence            99999999999999999998443

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}

Probab=100.00  E-value=4.9e-61  Score=524.27  Aligned_cols=267  Identities=29%  Similarity=0.344  Sum_probs=218.0

Q ss_pred             CCCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------CCeeeecceecCCCCChHHHHHHhhhhcce
Q psy5718          10 EIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------GGKFYLFDKVFKPNATQEKVYDEAAKSIVS   82 (720)
Q Consensus        10 ~~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------~~k~F~FD~VF~~~asQeeVY~~~~~plV~   82 (720)
                      .....++|+|+|||||+++.|...+...++.++++.   .+.+       ..+.|.||+||+++++|++||+.++.|+|+
T Consensus        18 ~~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~   94 (373)
T 2wbe_C           18 QKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPR---EVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIE   94 (373)
T ss_dssp             CCCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTT---EEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHH
T ss_pred             CcCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCC---eEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHH
Confidence            445678999999999999999877777788877665   3332       147899999999999999999999999999


Q ss_pred             eeecC---------------------C-----------CCceeehhhhhhhhhhhhhhcccccceeE-------------
Q psy5718          83 VQFVD---------------------A-----------DQYMVSVDRLRSDHQLKASTMCEHSLMHL-------------  117 (720)
Q Consensus        83 ~vl~G---------------------~-----------~~~~GIIpRav~~LF~~i~~~~~~~~~~v-------------  117 (720)
                      ++|+|                     +           ...+|||||++.+||..+......+.+.+             
T Consensus        95 ~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DL  174 (373)
T 2wbe_C           95 EVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDL  174 (373)
T ss_dssp             HHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEEES
T ss_pred             HHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEEeCCeEEEC
Confidence            99999                     1           13689999999999998865432222211             


Q ss_pred             --------------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC---C
Q psy5718         118 --------------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---N  174 (720)
Q Consensus       118 --------------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~---~  174 (720)
                                          ++|+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+....   .
T Consensus       175 L~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~  254 (373)
T 2wbe_C          175 LSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGE  254 (373)
T ss_dssp             SCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTC
T ss_pred             CCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCC
Confidence                                78999999999999999999999999999999999999999999999999876532   2


Q ss_pred             cccccceeeeeeccCCcccccCCCc-ccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hh
Q psy5718         175 EKKLSGKLYLVDLAGSEKVSKTGAE-GTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LV  243 (720)
Q Consensus       175 ~~~~~skL~lVDLAGSEr~~kt~~~-g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~m  243 (720)
                      .....|+|+|||||||||++++++. |.+++|+.+||+||++||+|  +|+++..|||||||||||||||        +|
T Consensus       255 ~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~m  334 (373)
T 2wbe_C          255 DMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTSI  334 (373)
T ss_dssp             CEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSEEEE
T ss_pred             cceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCceEEE
Confidence            2356799999999999999999987 99999999999999999999  9999999999999999999999        89


Q ss_pred             hccccCCcccHHHHHhHHHHHHHhccccccchhhhH
Q psy5718         244 ARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNER  279 (720)
Q Consensus       244 I~~iSPs~~~~~ETlsTL~fa~rak~Ikn~~~vN~~  279 (720)
                      |+||||+..+++||++||+||+|||+|+|.|.+|..
T Consensus       335 Ia~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~  370 (373)
T 2wbe_C          335 IATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQK  370 (373)
T ss_dssp             EEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEE
T ss_pred             EEEeCCCcccHHHHHHHHHHHHHHhhccccceeccc
Confidence            999999999999999999999999999999999973

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=5.3e-60  Score=513.31  Aligned_cols=256  Identities=27%  Similarity=0.337  Sum_probs=198.9

Q ss_pred             CCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------------------------CCeeeecceecCCC
Q psy5718          12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------------------------GGKFYLFDKVFKPN   66 (720)
Q Consensus        12 ~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------------------------~~k~F~FD~VF~~~   66 (720)
                      ...++|+|+|||||+++.|...+...++.+.++.   ++.+                         ..+.|.||+||+++
T Consensus         7 d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~   83 (355)
T 3lre_A            7 DLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKH---ILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDET   83 (355)
T ss_dssp             -----CEEEEEECCCCHHHHHTTCCBSEEECSSS---EEEEC------------------------CCEEEECSEEECTT
T ss_pred             hccCCCEEEEEeCcCChHHHhcCCceEEEecCCc---eEEecCCCCcceeecccccccccchhccCCCceEEeceEECCC
Confidence            4468999999999999999888887777765443   1111                         23579999999999


Q ss_pred             CChHHHHHHhhhhcceeeecC---------------------CCCceeehhhhhhhhhhhhhhcccccceeE--------
Q psy5718          67 ATQEKVYDEAAKSIVSVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL--------  117 (720)
Q Consensus        67 asQeeVY~~~~~plV~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v--------  117 (720)
                      ++|++||+.++.|+|+++|+|                     ++..+|||||++.+||..+........|.+        
T Consensus        84 ~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIY  163 (355)
T 3lre_A           84 STQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVY  163 (355)
T ss_dssp             CCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEE
T ss_pred             CChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEE
Confidence            999999999999999999999                     567899999999999999987654433332        


Q ss_pred             -----------------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC
Q psy5718         118 -----------------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN  174 (720)
Q Consensus       118 -----------------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~  174 (720)
                                             ++|+|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|.+.+...
T Consensus       164 nE~i~DLL~~~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~  243 (355)
T 3lre_A          164 NEQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTA  243 (355)
T ss_dssp             TTEEEESSSCCCCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTS
T ss_pred             CCEEEECcCCCCCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCC
Confidence                                   899999999999999999999999999999999999999999999999999977543


Q ss_pred             ---cccccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC---cccccccchhhhhhhh-----
Q psy5718         175 ---EKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF---TVARLYISKMKSEVKN-----  241 (720)
Q Consensus       175 ---~~~~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~---~hIPYRdSKLTrLLqd-----  241 (720)
                         .....|+|+|||||||||++++++.|.+++|+.+||+||++||+|  ||+++.   .|||||||||||||||     
T Consensus       244 ~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGn  323 (355)
T 3lre_A          244 SINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGN  323 (355)
T ss_dssp             CTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTT
T ss_pred             CCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCC
Confidence               345679999999999999999999999999999999999999999  998764   6999999999999999     


Q ss_pred             ---hhhccccCCcccHHHHHhHHHHHHHhccc
Q psy5718         242 ---LVARCTSMESSQAEEHKKAIEYEKELGET  270 (720)
Q Consensus       242 ---~mI~~iSPs~~~~~ETlsTL~fa~rak~I  270 (720)
                         +||+||||+..+++||++||+||+|||+|
T Consensus       324 skt~mIa~isP~~~~~~ETl~TL~fA~rak~I  355 (355)
T 3lre_A          324 CQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI  355 (355)
T ss_dssp             SEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred             ceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence               89999999999999999999999999986

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}

Probab=100.00  E-value=5.1e-60  Score=525.92  Aligned_cols=265  Identities=29%  Similarity=0.352  Sum_probs=215.8

Q ss_pred             CCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceee------------------eCCeeeecceecCC-------C
Q psy5718          12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLS------------------LGGKFYLFDKVFKP-------N   66 (720)
Q Consensus        12 ~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~------------------~~~k~F~FD~VF~~-------~   66 (720)
                      ...++|+|+|||||+++.|...+...++.+++.....++.                  ...+.|.||+|||+       .
T Consensus        35 ~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~  114 (443)
T 2owm_A           35 DPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHY  114 (443)
T ss_dssp             CCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTC
T ss_pred             CCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccC
Confidence            4567999999999999999888887778776654222221                  12578999999986       4


Q ss_pred             CChHHHHHHhhhhcceeeecC---------------------CCCceeehhhhhhhhhhhhhhcc---cccceeE-----
Q psy5718          67 ATQEKVYDEAAKSIVSVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMC---EHSLMHL-----  117 (720)
Q Consensus        67 asQeeVY~~~~~plV~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~---~~~~~~v-----  117 (720)
                      ++|++||+.++.|+|+++|+|                     ++..+|||||++.+||..+....   ..+.|.+     
T Consensus       115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~l  194 (443)
T 2owm_A          115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYF  194 (443)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEE
T ss_pred             CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEE
Confidence            899999999999999999999                     56789999999999999987642   2223322     


Q ss_pred             --------------------------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEE
Q psy5718         118 --------------------------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLI  165 (720)
Q Consensus       118 --------------------------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI  165 (720)
                                                      +||+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|
T Consensus       195 EIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti  274 (443)
T 2owm_A          195 EVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTI  274 (443)
T ss_dssp             EEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEE
T ss_pred             EEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEE
Confidence                                            789999999999999999999999999999999999999999999999


Q ss_pred             EEEeeecC----CcccccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC--------------
Q psy5718         166 NVKQENLE----NEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF--------------  225 (720)
Q Consensus       166 ~v~q~~~~----~~~~~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~--------------  225 (720)
                      +|.+....    ......|+|+|||||||||+.++++.|.+++|+.+||+||++||+|  +|+++.              
T Consensus       275 ~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~  354 (443)
T 2owm_A          275 MLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGR  354 (443)
T ss_dssp             EEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC----------------
T ss_pred             EEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhccccccccccccccccc
Confidence            99986532    2345679999999999999999999999999999999999999999  998743              


Q ss_pred             --------cccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHHHHHHhccccccchhhh
Q psy5718         226 --------TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE  278 (720)
Q Consensus       226 --------~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~fa~rak~Ikn~~~vN~  278 (720)
                              .|||||||||||||||        +||+||||+  +++||++||+||.|||+|+|.|.+|.
T Consensus       355 ~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~  421 (443)
T 2owm_A          355 GRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQ  421 (443)
T ss_dssp             ---------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCC
T ss_pred             ccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecc
Confidence                    3899999999999999        899999997  59999999999999999999999998

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-59  Score=505.64  Aligned_cols=258  Identities=29%  Similarity=0.404  Sum_probs=218.5

Q ss_pred             CCCCEEEEEeeCCCCchhhccC-CceEEEecCCCccceeee--C--CeeeecceecCCCCChHHHHHHhhhhcceeeecC
Q psy5718          13 AEDSIRVVCRFRPLNHSEEKAG-SKFIVKFPSGGEENGLSL--G--GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD   87 (720)
Q Consensus        13 ~~~~IrV~vRVRPl~~~E~~~g-~~~iv~~~~~~~~~~v~~--~--~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G   87 (720)
                      .+++|+|+|||||+++.|...+ ...++.++..+.. .+.+  .  .+.|.||+||+++++|++||+.+ .|+|+++|+|
T Consensus         2 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G   79 (330)
T 2h58_A            2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDS-IIHLLHKGKPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDG   79 (330)
T ss_dssp             ---CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTT-EEEEEETTEEEEEECSEEECTTCCHHHHHTTT-HHHHHHHHTT
T ss_pred             CCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCc-EEEEcCCCCeeEEecCeEeCCCCCcHhHHHHH-HHHHHHHhCC
Confidence            3689999999999999886432 3345666544322 2222  2  36899999999999999999985 8999999999


Q ss_pred             ---------------------CCCceeehhhhhhhhhhhhhhcccccceeE-----------------------------
Q psy5718          88 ---------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL-----------------------------  117 (720)
Q Consensus        88 ---------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v-----------------------------  117 (720)
                                           ++..+|||||++.+||..+........|.+                             
T Consensus        80 ~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~  159 (330)
T 2h58_A           80 FNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLC  159 (330)
T ss_dssp             CCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEEC
T ss_pred             CEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceEEEe
Confidence                                 567899999999999999976544433333                             


Q ss_pred             ------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCc
Q psy5718         118 ------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSE  191 (720)
Q Consensus       118 ------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSE  191 (720)
                            ++|+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+...+....|+|+||||||||
T Consensus       160 ~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGSE  239 (330)
T 2h58_A          160 PDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSE  239 (330)
T ss_dssp             TTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEECCCCC
T ss_pred             ecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEeCCCCC
Confidence                  78999999999999999999999999999999999999999999999999998887777889999999999999


Q ss_pred             ccccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHHhHH
Q psy5718         192 KVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAI  261 (720)
Q Consensus       192 r~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL  261 (720)
                      |++++++.|.+++|+.+||+||++||+|  ||+.+..|||||||||||||||        +||+||||+..+++||++||
T Consensus       240 r~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~TL  319 (330)
T 2h58_A          240 RVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSL  319 (330)
T ss_dssp             CCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHH
T ss_pred             cccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHHHH
Confidence            9999999999999999999999999999  9999889999999999999999        99999999999999999999


Q ss_pred             HHHHHhccccc
Q psy5718         262 EYEKELGETRL  272 (720)
Q Consensus       262 ~fa~rak~Ikn  272 (720)
                      +||+|||+|+.
T Consensus       320 ~fA~rak~i~~  330 (330)
T 2h58_A          320 KFAERVRSVEL  330 (330)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHhhCcC
Confidence            99999999863

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*

Probab=100.00  E-value=1.3e-59  Score=508.79  Aligned_cols=257  Identities=30%  Similarity=0.355  Sum_probs=205.1

Q ss_pred             cCCCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-CCeeeecceecCCCCChHHHHHHhhhhcceeeecC
Q psy5718           9 REIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD   87 (720)
Q Consensus         9 ~~~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G   87 (720)
                      .+++.+++|+|+|||||+++.|...+...|+.+.++.  ..+.+ ..+.|.||+||+++++|++||+.++.|+|+++|+|
T Consensus         5 ~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~--~~~~~~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G   82 (344)
T 4a14_A            5 LPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGL--GRVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEG   82 (344)
T ss_dssp             ----CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGG--TEEEETTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTT
T ss_pred             CCCccccceEEEEEecccchHHHhccCeeEEEEcCCC--ceEEecccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhh
Confidence            4566789999999999999999888888888776554  23444 46899999999999999999999999999999999


Q ss_pred             ---------------------C------CCceeehhhhhhhhhhhhhhcccccceeE-----------------------
Q psy5718          88 ---------------------A------DQYMVSVDRLRSDHQLKASTMCEHSLMHL-----------------------  117 (720)
Q Consensus        88 ---------------------~------~~~~GIIpRav~~LF~~i~~~~~~~~~~v-----------------------  117 (720)
                                           .      ...+|||||++.+||..+.... ...|.+                       
T Consensus        83 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~~~~  161 (344)
T 4a14_A           83 FNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEND-LLDCLVHVSYLEVYKEEFRDLLEVGTASR  161 (344)
T ss_dssp             CCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCT-TSEEEEEEEEEEEETTEEEETTSSCCCGG
T ss_pred             cCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhccccc-ceeeEEEEehhhhhHHHHHHHHHhccccc
Confidence                                 1      3678999999999999987642 222222                       


Q ss_pred             -----------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC--------Ccccc
Q psy5718         118 -----------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE--------NEKKL  178 (720)
Q Consensus       118 -----------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~--------~~~~~  178 (720)
                                 +||+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+..        .+...
T Consensus       162 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~  241 (344)
T 4a14_A          162 DIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLL  241 (344)
T ss_dssp             GCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEE
T ss_pred             cceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCcccccee
Confidence                       89999999999999999999999999999999999999999999999999987542        23456


Q ss_pred             cceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC---cccccccchhhhhhhh--------hhhc
Q psy5718         179 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF---TVARLYISKMKSEVKN--------LVAR  245 (720)
Q Consensus       179 ~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~---~hIPYRdSKLTrLLqd--------~mI~  245 (720)
                      .|+|+|||||||||+.++++.|.+++|+.+||+||++||+|  +|+++.   .|||||||||||||||        +||+
T Consensus       242 ~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~  321 (344)
T 4a14_A          242 VSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIA  321 (344)
T ss_dssp             EEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEE
T ss_pred             eeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEE
Confidence            79999999999999999999999999999999999999999  998754   6999999999999999        8999


Q ss_pred             cccCCcccHHHHHhHHHHHHHhc
Q psy5718         246 CTSMESSQAEEHKKAIEYEKELG  268 (720)
Q Consensus       246 ~iSPs~~~~~ETlsTL~fa~rak  268 (720)
                      ||||+..+++||++||+||+|||
T Consensus       322 ~vsP~~~~~~ETl~TL~fA~rAk  344 (344)
T 4a14_A          322 CVSPSSSDFDETLNTLNYASRAQ  344 (344)
T ss_dssp             EECCBGGGHHHHHHHHHHHHHTC
T ss_pred             EeCCCccchhHHhhhhhhhhhcC
Confidence            99999999999999999999996

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*

Probab=100.00  E-value=6.3e-60  Score=514.62  Aligned_cols=262  Identities=27%  Similarity=0.345  Sum_probs=214.7

Q ss_pred             CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------CCeeeecceecCCC--------CChHHHHHHhhh
Q psy5718          14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------GGKFYLFDKVFKPN--------ATQEKVYDEAAK   78 (720)
Q Consensus        14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------~~k~F~FD~VF~~~--------asQeeVY~~~~~   78 (720)
                      .++|+|+|||||+++.|...+...++.++++.   ++..       ..+.|.||+|||+.        ++|++||+.++.
T Consensus         3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~---~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~   79 (366)
T 2zfi_A            3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGST---TTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGE   79 (366)
T ss_dssp             -CCEEEEEEECCCCHHHHHTTCCBCEEEETTE---EEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHH
T ss_pred             CCCcEEEEECCCCChhhccCCCCeEEEECCCc---EEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHH
Confidence            46899999999999999888888888777654   2222       24789999999987        899999999999


Q ss_pred             hcceeeecC---------------------C--CCceeehhhhhhhhhhhhhhcc-cccceeE-----------------
Q psy5718          79 SIVSVQFVD---------------------A--DQYMVSVDRLRSDHQLKASTMC-EHSLMHL-----------------  117 (720)
Q Consensus        79 plV~~vl~G---------------------~--~~~~GIIpRav~~LF~~i~~~~-~~~~~~v-----------------  117 (720)
                      |+|+++|+|                     +  ...+|||||++.+||..+.... ....|.+                 
T Consensus        80 plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~  159 (366)
T 2zfi_A           80 EMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN  159 (366)
T ss_dssp             HHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTC
T ss_pred             HHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccc
Confidence            999999999                     1  3468999999999999987643 2223322                 


Q ss_pred             ----------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCc----cc
Q psy5718         118 ----------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENE----KK  177 (720)
Q Consensus       118 ----------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~----~~  177 (720)
                                      +||+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+......    ..
T Consensus       160 ~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~  239 (366)
T 2zfi_A          160 PKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE  239 (366)
T ss_dssp             TTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEE
T ss_pred             cccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccce
Confidence                            7999999999999999999999999999999999999999999999999998765432    34


Q ss_pred             ccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccC------------Ccccccccchhhhhhhh--
Q psy5718         178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEE------------FTVARLYISKMKSEVKN--  241 (720)
Q Consensus       178 ~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~------------~~hIPYRdSKLTrLLqd--  241 (720)
                      ..|+|+|||||||||++++++.|.+++|+.+||+||++||+|  +|+++            ..|||||||||||||||  
T Consensus       240 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsL  319 (366)
T 2zfi_A          240 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENL  319 (366)
T ss_dssp             EEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGS
T ss_pred             eEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHh
Confidence            579999999999999999999999999999999999999999  88763            37999999999999999  


Q ss_pred             ------hhhccccCCcccHHHHHhHHHHHHHhccccccchhhh
Q psy5718         242 ------LVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE  278 (720)
Q Consensus       242 ------~mI~~iSPs~~~~~ETlsTL~fa~rak~Ikn~~~vN~  278 (720)
                            +||+||||+..+++||++||+||+|||+|+|.|.++.
T Consensus       320 gGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~  362 (366)
T 2zfi_A          320 GGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH  362 (366)
T ss_dssp             STTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred             CCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence                  8999999999999999999999999999999998875

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}

Probab=100.00  E-value=1.2e-58  Score=501.95  Aligned_cols=261  Identities=25%  Similarity=0.334  Sum_probs=206.4

Q ss_pred             CCCCEEEEEeeCCCCchhhccCCceEEEecCCC-ccceeee--C-----CeeeecceecCCCCChHHHHHHhhhhcceee
Q psy5718          13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGG-EENGLSL--G-----GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQ   84 (720)
Q Consensus        13 ~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~-~~~~v~~--~-----~k~F~FD~VF~~~asQeeVY~~~~~plV~~v   84 (720)
                      .+|+|||||||||+++.|...+...++...++. ....+.+  .     .+.|.||+||+++++|++||+.+ .|+|+++
T Consensus         3 lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~~   81 (349)
T 3t0q_A            3 LRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQSS   81 (349)
T ss_dssp             --CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHH-HHHHHGG
T ss_pred             CCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHH-HHHHHHH
Confidence            468999999999999998777666655543322 1122222  1     36899999999999999999986 6999999


Q ss_pred             ecC-------------------CCCceeehhhhhhhhhhhhhhccc-ccceeE---------------------------
Q psy5718          85 FVD-------------------ADQYMVSVDRLRSDHQLKASTMCE-HSLMHL---------------------------  117 (720)
Q Consensus        85 l~G-------------------~~~~~GIIpRav~~LF~~i~~~~~-~~~~~v---------------------------  117 (720)
                      |+|                   .+..+|||||++.+||..+..... .+.|.+                           
T Consensus        82 l~G~n~tifAYGqTGSGKTyTm~g~~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~  161 (349)
T 3t0q_A           82 LDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDE  161 (349)
T ss_dssp             GTTCEEEEEEECSTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC----------
T ss_pred             HCCcceeEEEeCCCCCCCceEeCCCCCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccccccccc
Confidence            999                   234579999999999998865322 112211                           


Q ss_pred             -----------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccc
Q psy5718         118 -----------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG  180 (720)
Q Consensus       118 -----------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~s  180 (720)
                                       +||+|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|.+.+...+....|
T Consensus       162 ~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~  241 (349)
T 3t0q_A          162 ILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQG  241 (349)
T ss_dssp             -----CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTTCCEEEE
T ss_pred             ccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCCCeeEE
Confidence                             789999999999999999999999999999999999999999999999999998888888899


Q ss_pred             eeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC---cccccccchhhhhhhh--------hhhccc
Q psy5718         181 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF---TVARLYISKMKSEVKN--------LVARCT  247 (720)
Q Consensus       181 kL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~---~hIPYRdSKLTrLLqd--------~mI~~i  247 (720)
                      +|+|||||||||++++++.|.+++|+.+||+||++||+|  ||+++.   .|||||||||||||||        +||+||
T Consensus       242 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~~v  321 (349)
T 3t0q_A          242 KLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNI  321 (349)
T ss_dssp             EEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEEEEE
T ss_pred             EEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEe
Confidence            999999999999999999999999999999999999999  998765   5999999999999999        899999


Q ss_pred             cCCcccHHHHHhHHHHHHHhccccccc
Q psy5718         248 SMESSQAEEHKKAIEYEKELGETRLLL  274 (720)
Q Consensus       248 SPs~~~~~ETlsTL~fa~rak~Ikn~~  274 (720)
                      ||+..+++||++||+||+|++.|+..+
T Consensus       322 sP~~~~~~ETl~TL~fA~rv~~ik~~~  348 (349)
T 3t0q_A          322 PPDPNHISETLNSLRFASKVNSTKIAK  348 (349)
T ss_dssp             CCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred             CCchhhHHHHHHHHHHHHHhhhcccCC
Confidence            999999999999999999999998654

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*

Probab=100.00  E-value=5.3e-59  Score=502.99  Aligned_cols=261  Identities=23%  Similarity=0.294  Sum_probs=202.0

Q ss_pred             CcCCCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeCCeeeecceecCCCCChHHHHHHhhhhcceeeecC
Q psy5718           8 DREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD   87 (720)
Q Consensus         8 ~~~~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G   87 (720)
                      +|+.+..++|+|+|||||+++.+ ..+...++.+++......+.++++.|.||+||+++++|++||+.++.|+|+++|+|
T Consensus        15 ~m~~~~~~~VrV~vRvRP~~~~e-~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G   93 (344)
T 3dc4_A           15 GMEGAKLSAVRIAVREAPYRQFL-GRREPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEG   93 (344)
T ss_dssp             ----CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHT
T ss_pred             CCCCCCCCCeEEEEECCCCCccc-ccCCceEEEecCCCCCceEEecCcEEEcceEECCCCCHHHHHHhhccchhhHhhCC
Confidence            56677889999999999999877 34566778887644445788889999999999999999999999999999999999


Q ss_pred             ---------------------C------CCceeehhhhhhhhhhhhhhcccc--cceeE---------------------
Q psy5718          88 ---------------------A------DQYMVSVDRLRSDHQLKASTMCEH--SLMHL---------------------  117 (720)
Q Consensus        88 ---------------------~------~~~~GIIpRav~~LF~~i~~~~~~--~~~~v---------------------  117 (720)
                                           +      +..+|||||++.+||..+......  ..|.+                     
T Consensus        94 ~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~  173 (344)
T 3dc4_A           94 FQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPH  173 (344)
T ss_dssp             CCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTT
T ss_pred             CceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCC
Confidence                                 1      356799999999999999765432  12222                     


Q ss_pred             -----EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCcc
Q psy5718         118 -----IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK  192 (720)
Q Consensus       118 -----~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr  192 (720)
                           ..+.|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|.+.      ...|+|+|||||||||
T Consensus       174 ~~~~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~skl~lVDLAGSEr  247 (344)
T 3dc4_A          174 MPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------THHSRMNIVDLAGSEG  247 (344)
T ss_dssp             SBCCSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS------SCEEEEEEEECCCCCC
T ss_pred             CccccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec------CcEEEEEEEECCCCcc
Confidence                 23568999999999999999999999999999999999999999999999763      3579999999999999


Q ss_pred             cccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHH
Q psy5718         193 VSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIE  262 (720)
Q Consensus       193 ~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~  262 (720)
                      +.++++.|.+++|+.+||+||++||+|  +|+.+..|||||||||||||||        +||+||||+..+++||++||+
T Consensus       248 ~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTL~  327 (344)
T 3dc4_A          248 VRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLR  327 (344)
T ss_dssp             C-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHHHHHHHH
Confidence            999999999999999999999999999  9999999999999999999999        899999999999999999999


Q ss_pred             HHHHhccccccch
Q psy5718         263 YEKELGETRLLLQ  275 (720)
Q Consensus       263 fa~rak~Ikn~~~  275 (720)
                      ||+||+..+..|.
T Consensus       328 fA~ra~~~~~~~~  340 (344)
T 3dc4_A          328 FGTSAKAAALEHH  340 (344)
T ss_dssp             HHHHHHHHTTTC-
T ss_pred             HHHHHhhcCCCCC
Confidence            9999999876653

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9

Probab=100.00  E-value=7.9e-59  Score=504.43  Aligned_cols=257  Identities=22%  Similarity=0.254  Sum_probs=221.4

Q ss_pred             CEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------------CCeeeecceecCCCCChHHHHHHhhhhcce
Q psy5718          16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------------GGKFYLFDKVFKPNATQEKVYDEAAKSIVS   82 (720)
Q Consensus        16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------------~~k~F~FD~VF~~~asQeeVY~~~~~plV~   82 (720)
                      +|+|+|||||+++.|...+...++.++++.   ++.+             ..+.|.||+||+++++|++||+.++.|+|.
T Consensus         1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~---~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~   77 (360)
T 1ry6_A            1 MIKVVVRKRPLSELEKKKKDSDIITVKNNC---TLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLII   77 (360)
T ss_dssp             CEEEEEEECCCCHHHHHTTCCBCEEEEETT---EEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHH
T ss_pred             CeEEEEECCCCChHHhccCCceEEEECCCC---EEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhh
Confidence            599999999999999888877788776654   3332             236899999999999999999999999999


Q ss_pred             eeec-C---------------------C-----CCceeehhhhhhhhhhhhhhcccccceeE------------------
Q psy5718          83 VQFV-D---------------------A-----DQYMVSVDRLRSDHQLKASTMCEHSLMHL------------------  117 (720)
Q Consensus        83 ~vl~-G---------------------~-----~~~~GIIpRav~~LF~~i~~~~~~~~~~v------------------  117 (720)
                      ++|. |                     +     ...+|||||++.+||..+........+.+                  
T Consensus        78 ~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~  157 (360)
T 1ry6_A           78 DLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQK  157 (360)
T ss_dssp             HHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC
T ss_pred             hhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccC
Confidence            9885 6                     1     36799999999999999876544333332                  


Q ss_pred             -------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeee
Q psy5718         118 -------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYL  184 (720)
Q Consensus       118 -------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~l  184 (720)
                                   ++|+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+.+   .....|+|+|
T Consensus       158 ~~~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~---~~~~~skL~l  234 (360)
T 1ry6_A          158 RKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN---KNTSLGKIAF  234 (360)
T ss_dssp             -----------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT---TTEEEEEEEE
T ss_pred             CccceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc---CCcceeEEEE
Confidence                         789999999999999999999999999999999999999999999999998754   2356799999


Q ss_pred             eeccCCcccccCCCcc-cchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCccc
Q psy5718         185 VDLAGSEKVSKTGAEG-TVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQ  253 (720)
Q Consensus       185 VDLAGSEr~~kt~~~g-~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~  253 (720)
                      ||||||||..++++.| .+++|+.+||+||++||+|  ||+.+..|||||||||||||||        +||+||||+..+
T Consensus       235 VDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~  314 (360)
T 1ry6_A          235 IDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISC  314 (360)
T ss_dssp             EECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGG
T ss_pred             EECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCccc
Confidence            9999999999999876 4688999999999999999  9999889999999999999999        899999999999


Q ss_pred             HHHHHhHHHHHHHhccccccchhhh
Q psy5718         254 AEEHKKAIEYEKELGETRLLLQTNE  278 (720)
Q Consensus       254 ~~ETlsTL~fa~rak~Ikn~~~vN~  278 (720)
                      ++||++||+||+|||+|+|.|..|.
T Consensus       315 ~~ETlsTLrfA~rak~i~n~~~~~~  339 (360)
T 1ry6_A          315 CEQTLNTLRYSSRVKNKGNSKLEGK  339 (360)
T ss_dssp             HHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHHHHHHHhhcccCcccCC
Confidence            9999999999999999999665554

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*

Probab=100.00  E-value=2.7e-58  Score=498.55  Aligned_cols=259  Identities=25%  Similarity=0.295  Sum_probs=208.4

Q ss_pred             CCCEEEEEeeCCCCc-hhhccCCceEEEecC---CCccceeee-------CCeeeecceecCCCCChHHHHHHhhhhcce
Q psy5718          14 EDSIRVVCRFRPLNH-SEEKAGSKFIVKFPS---GGEENGLSL-------GGKFYLFDKVFKPNATQEKVYDEAAKSIVS   82 (720)
Q Consensus        14 ~~~IrV~vRVRPl~~-~E~~~g~~~iv~~~~---~~~~~~v~~-------~~k~F~FD~VF~~~asQeeVY~~~~~plV~   82 (720)
                      +++|+|+|||||+++ .|.  ....++.+..   ......+.+       ..+.|.||+||+++++|++||+.+ .|+|+
T Consensus         2 k~nIrV~vRvRP~~~~~e~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~   78 (347)
T 1f9v_A            2 RGNIRVYCRIRPALKNLEN--SDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQ   78 (347)
T ss_dssp             -CEEEEEEEECCCCTTTCC--CTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHHHG
T ss_pred             CCCeEEEEEeCCCCccccc--CCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHH-HHHHH
Confidence            578999999999987 332  2333444332   111122322       137899999999999999999986 59999


Q ss_pred             eeecC-------------------CCCceeehhhhhhhhhhhhhhccc-ccceeE-------------------------
Q psy5718          83 VQFVD-------------------ADQYMVSVDRLRSDHQLKASTMCE-HSLMHL-------------------------  117 (720)
Q Consensus        83 ~vl~G-------------------~~~~~GIIpRav~~LF~~i~~~~~-~~~~~v-------------------------  117 (720)
                      ++|+|                   .+..+|||||++.+||..+..... .+.|.+                         
T Consensus        79 ~~l~G~n~tifAYGqTGSGKTyTM~G~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~  158 (347)
T 1f9v_A           79 SSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKED  158 (347)
T ss_dssp             GGGGTCCEEEEEECCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--------
T ss_pred             HhcCCceeEEEEECCCCCCCcEeccCCCCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccc
Confidence            99999                   234679999999999998865321 122211                         


Q ss_pred             -----------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccc
Q psy5718         118 -----------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSG  180 (720)
Q Consensus       118 -----------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~s  180 (720)
                                       ++|.|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|.+.+...+....|
T Consensus       159 ~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~s  238 (347)
T 1f9v_A          159 TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYG  238 (347)
T ss_dssp             -----CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEEEE
T ss_pred             cccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCCceeee
Confidence                             689999999999999999999999999999999999999999999999999988777777889


Q ss_pred             eeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC---cccccccchhhhhhhh--------hhhccc
Q psy5718         181 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF---TVARLYISKMKSEVKN--------LVARCT  247 (720)
Q Consensus       181 kL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~---~hIPYRdSKLTrLLqd--------~mI~~i  247 (720)
                      +|+|||||||||++++++.|.+++|+.+||+||++||+|  ||+++.   .|||||||||||||||        +||+||
T Consensus       239 kL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~v  318 (347)
T 1f9v_A          239 TLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNI  318 (347)
T ss_dssp             EEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEE
T ss_pred             EEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEEEe
Confidence            999999999999999999999999999999999999999  998876   8999999999999999        899999


Q ss_pred             cCCcccHHHHHhHHHHHHHhccccccch
Q psy5718         248 SMESSQAEEHKKAIEYEKELGETRLLLQ  275 (720)
Q Consensus       248 SPs~~~~~ETlsTL~fa~rak~Ikn~~~  275 (720)
                      ||+..+++||++||+||+||++|++.+.
T Consensus       319 sP~~~~~~ETl~TLrfA~r~~~i~~~~r  346 (347)
T 1f9v_A          319 SPSSSHINETLNSLRFASKVNSTRLVSR  346 (347)
T ss_dssp             CCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred             CCccccHHHHHHHHHHHHHHhhhccCCC
Confidence            9999999999999999999999998764

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*

Probab=100.00  E-value=3.8e-58  Score=501.96  Aligned_cols=255  Identities=26%  Similarity=0.314  Sum_probs=200.2

Q ss_pred             CCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------------CCeeeecceecCCCCChHHHHHHhh
Q psy5718          11 IAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------------GGKFYLFDKVFKPNATQEKVYDEAA   77 (720)
Q Consensus        11 ~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------------~~k~F~FD~VF~~~asQeeVY~~~~   77 (720)
                      +..+++|+|+|||||+++.|...+...++.++++.   .+.+             ..+.|.||+||+++++|++||+.++
T Consensus        47 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~---~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~  123 (387)
T 2heh_A           47 PIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKC---LLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTA  123 (387)
T ss_dssp             CCCCCSEEEEEEECCCCHHHHHTTCCBCEECCBSS---EEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTT
T ss_pred             CCCCCCeEEEEECCCCChHHhccCCceEEEECCCC---EEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhH
Confidence            34579999999999999999888877788776654   2221             2368999999999999999999999


Q ss_pred             hhcceeeecC--------------------C-------CCceeehhhhhhhhhhhhhhcc-cccceeE------------
Q psy5718          78 KSIVSVQFVD--------------------A-------DQYMVSVDRLRSDHQLKASTMC-EHSLMHL------------  117 (720)
Q Consensus        78 ~plV~~vl~G--------------------~-------~~~~GIIpRav~~LF~~i~~~~-~~~~~~v------------  117 (720)
                      .|+|+++|+|                    .       ...+|||||++.+||..+.... ....|.+            
T Consensus       124 ~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v  203 (387)
T 2heh_A          124 RPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKL  203 (387)
T ss_dssp             HHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEE
T ss_pred             HHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeE
Confidence            9999999999                    1       2468999999999999886532 1222222            


Q ss_pred             -------------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccc
Q psy5718         118 -------------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKL  178 (720)
Q Consensus       118 -------------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~  178 (720)
                                         +||.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+..     ..
T Consensus       204 ~DLL~~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~-----~~  278 (387)
T 2heh_A          204 FDLLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKG-----RM  278 (387)
T ss_dssp             EETTTTTEECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESSS-----SE
T ss_pred             EECCCCCccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEECC-----ee
Confidence                               899999999999999999999999999999999999999999999999998752     46


Q ss_pred             cceeeeeeccCCcccccCCC-cccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh---------hhhcc
Q psy5718         179 SGKLYLVDLAGSEKVSKTGA-EGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN---------LVARC  246 (720)
Q Consensus       179 ~skL~lVDLAGSEr~~kt~~-~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd---------~mI~~  246 (720)
                      .|+|+|||||||||..++++ .+.+++|+++||+||++||+|  ||+.+..|||||||||||||||         +||+|
T Consensus       279 ~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsllGgnskT~mIa~  358 (387)
T 2heh_A          279 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAT  358 (387)
T ss_dssp             EEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGSSTTEEEEEEEE
T ss_pred             eeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhccCCCCeEEEEEE
Confidence            79999999999999988864 567888999999999999999  9999889999999999999999         89999


Q ss_pred             ccCCcccHHHHHhHHHHHHHhcccccc
Q psy5718         247 TSMESSQAEEHKKAIEYEKELGETRLL  273 (720)
Q Consensus       247 iSPs~~~~~ETlsTL~fa~rak~Ikn~  273 (720)
                      |||+..+++||++||+||.|||+|++.
T Consensus       359 isP~~~~~~ETlsTLrfA~rak~I~~~  385 (387)
T 2heh_A          359 ISPGISSCEYTLNTLRYADRVKELSPH  385 (387)
T ss_dssp             ECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred             eCCccchHHHHHHHHHHHHHhccCcCC
Confidence            999999999999999999999999875

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*

Probab=100.00  E-value=6e-58  Score=503.31  Aligned_cols=256  Identities=26%  Similarity=0.289  Sum_probs=201.5

Q ss_pred             CCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------------CCeeeecceecCCCCChHHHHHHhhh
Q psy5718          12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------------GGKFYLFDKVFKPNATQEKVYDEAAK   78 (720)
Q Consensus        12 ~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------------~~k~F~FD~VF~~~asQeeVY~~~~~   78 (720)
                      ...++|+|+|||||+++.|...+...++.++++.   ++.+             ..+.|.||+||+++++|++||+.++.
T Consensus        68 ~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~---~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~  144 (410)
T 1v8k_A           68 IEEHRICVCVRKRPLNKQELAKKEIDVISVPSKC---LLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTAR  144 (410)
T ss_dssp             TSCCCEEEEEEECCCCHHHHHTTCCBCEECCSSS---EEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTH
T ss_pred             CCCCCeEEEEEeCCCChhHhhcCCccEEEECCCC---EEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHH
Confidence            3478999999999999999888887788877654   2222             23689999999999999999999999


Q ss_pred             hcceeeecC--------------------C-------CCceeehhhhhhhhhhhhhhcc-cccceeE-------------
Q psy5718          79 SIVSVQFVD--------------------A-------DQYMVSVDRLRSDHQLKASTMC-EHSLMHL-------------  117 (720)
Q Consensus        79 plV~~vl~G--------------------~-------~~~~GIIpRav~~LF~~i~~~~-~~~~~~v-------------  117 (720)
                      |+|+++|+|                    .       ...+|||||++.+||..+.... ....|.+             
T Consensus       145 plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~  224 (410)
T 1v8k_A          145 PLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVF  224 (410)
T ss_dssp             HHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEE
T ss_pred             HHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEE
Confidence            999999999                    1       2468999999999999886532 1222222             


Q ss_pred             ------------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCccccc
Q psy5718         118 ------------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS  179 (720)
Q Consensus       118 ------------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~  179 (720)
                                        +||.|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|.+..     ...
T Consensus       225 DLL~~~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~-----~~~  299 (410)
T 1v8k_A          225 DLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG-----RLH  299 (410)
T ss_dssp             ETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS-----SEE
T ss_pred             ECCCCCCCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeCC-----cce
Confidence                              899999999999999999999999999999999999999999999999998752     467


Q ss_pred             ceeeeeeccCCcccccCCC-cccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh---------hhhccc
Q psy5718         180 GKLYLVDLAGSEKVSKTGA-EGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN---------LVARCT  247 (720)
Q Consensus       180 skL~lVDLAGSEr~~kt~~-~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd---------~mI~~i  247 (720)
                      |+|+|||||||||..++++ .|.+++|+++||+||++||+|  ||+.+..||||||||||+||||         +||+||
T Consensus       300 skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsllGgnskT~mIa~i  379 (410)
T 1v8k_A          300 GKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMI  379 (410)
T ss_dssp             EEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEEEEEE
T ss_pred             eEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHHhhcccCCCceEEEEEEe
Confidence            9999999999999988864 567888999999999999999  9998889999999999999999         899999


Q ss_pred             cCCcccHHHHHhHHHHHHHhccccccch
Q psy5718         248 SMESSQAEEHKKAIEYEKELGETRLLLQ  275 (720)
Q Consensus       248 SPs~~~~~ETlsTL~fa~rak~Ikn~~~  275 (720)
                      ||+..+++||++||+||.||+.|..+|.
T Consensus       380 SP~~~~~~ETlsTLrfA~rak~i~~~~~  407 (410)
T 1v8k_A          380 SPGISSCEYTLNTLRYADRVKELSHHHH  407 (410)
T ss_dssp             CCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred             CCccccHHHHHHHHHHHHHhccCCCCCC
Confidence            9999999999999999999999988774

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}

Probab=100.00  E-value=6.4e-58  Score=499.55  Aligned_cols=257  Identities=28%  Similarity=0.341  Sum_probs=191.2

Q ss_pred             CCCCCEEEEEeeCCCCchhhccCCceEEEecCC-----Cccceeee-----------------CCeeeecceecCCCCCh
Q psy5718          12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSG-----GEENGLSL-----------------GGKFYLFDKVFKPNATQ   69 (720)
Q Consensus        12 ~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~-----~~~~~v~~-----------------~~k~F~FD~VF~~~asQ   69 (720)
                      ..+++|+|+|||||+++.|...+...+ .++.+     ....++.+                 ..+.|.||+||+++++|
T Consensus        19 ~~~~~irV~vRvRP~~~~E~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q   97 (376)
T 2rep_A           19 SLKGNIRVFCRVRPVLPGEPTPPPGLL-LFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQ   97 (376)
T ss_dssp             ----CEEEEEEECCCCTTSCCCCGGGS-BCCC------CCCCEEECCC-----------------CEEECSEEECTTCCH
T ss_pred             ccCCCeEEEEEcCCCChhhcccCCceE-EEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccc
Confidence            457899999999999999876543211 11110     00011111                 13579999999999999


Q ss_pred             HHHHHHhhhhcceeeecC---------------------C----CCceeehhhhhhhhhhhhhhccc-ccceeE------
Q psy5718          70 EKVYDEAAKSIVSVQFVD---------------------A----DQYMVSVDRLRSDHQLKASTMCE-HSLMHL------  117 (720)
Q Consensus        70 eeVY~~~~~plV~~vl~G---------------------~----~~~~GIIpRav~~LF~~i~~~~~-~~~~~v------  117 (720)
                      ++||+.+ .|+|+++|+|                     +    +..+|||||++.+||..+..... .+.|.+      
T Consensus        98 ~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~E  176 (376)
T 2rep_A           98 DEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVE  176 (376)
T ss_dssp             HHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEE
T ss_pred             hhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEE
Confidence            9999996 5899999999                     1    24789999999999998865321 222222      


Q ss_pred             ---------------------------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEE
Q psy5718         118 ---------------------------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFL  164 (720)
Q Consensus       118 ---------------------------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~Ift  164 (720)
                                                       ++|.|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+
T Consensus       177 IYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ift  256 (376)
T 2rep_A          177 IYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQ  256 (376)
T ss_dssp             EETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEE
T ss_pred             EECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEE
Confidence                                             68999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeecCCcccccceeeeeeccCCcccccCCCcc----cchHHhhhhccCCccccCc--ccccCCcccccccchhhhh
Q psy5718         165 INVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEG----TVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSE  238 (720)
Q Consensus       165 I~v~q~~~~~~~~~~skL~lVDLAGSEr~~kt~~~g----~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrL  238 (720)
                      |+|.+.+...+....|+|+|||||||||++++++.|    .+++|+.+||+||++||+|  ||+++..||||||||||||
T Consensus       257 i~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLT~L  336 (376)
T 2rep_A          257 LQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYL  336 (376)
T ss_dssp             EEEEEEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCCGGGSHHHHH
T ss_pred             EEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCcCCHHHHH
Confidence            999998877777788999999999999999999999    9999999999999999999  9999999999999999999


Q ss_pred             hhh--------hhhccccCCcccHHHHHhHHHHHHHhccc
Q psy5718         239 VKN--------LVARCTSMESSQAEEHKKAIEYEKELGET  270 (720)
Q Consensus       239 Lqd--------~mI~~iSPs~~~~~ETlsTL~fa~rak~I  270 (720)
                      |||        +||+||||+..+++||++||+||+|++.+
T Consensus       337 LqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~  376 (376)
T 2rep_A          337 LQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC  376 (376)
T ss_dssp             TGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred             HHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence            999        89999999999999999999999999864

>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.5e-58  Score=499.22  Aligned_cols=258  Identities=25%  Similarity=0.334  Sum_probs=192.4

Q ss_pred             CCCCCCEEEEEeeCCCCchhhcc----CCceEEEecCCCccceeee----CCeeeecceecCCCCChHHHHHHhhhhcce
Q psy5718          11 IAAEDSIRVVCRFRPLNHSEEKA----GSKFIVKFPSGGEENGLSL----GGKFYLFDKVFKPNATQEKVYDEAAKSIVS   82 (720)
Q Consensus        11 ~~~~~~IrV~vRVRPl~~~E~~~----g~~~iv~~~~~~~~~~v~~----~~k~F~FD~VF~~~asQeeVY~~~~~plV~   82 (720)
                      .+.+++|+|||||||+++.+...    .+...+.+...........    ..+.|.||+||++ ++|++||+.++.|+|+
T Consensus        20 ~~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~-~sQ~~Vy~~~~~plv~   98 (359)
T 3nwn_A           20 MGTRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLHD-ASQDLVYETVAKDVVS   98 (359)
T ss_dssp             ----CCEEEEEEECCCSSCCTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEES-CCHHHHHHHHTHHHHH
T ss_pred             CCCCCCEEEEEEcCCCCcccccceeecCCCcEEEEecCCccccccccCCcCceEeecCccCCC-CCHHHHHHHHHHHHHH
Confidence            35678999999999998765321    1111222211110000001    1367999999975 8999999999999999


Q ss_pred             eeecC------------------------CCCceeehhhhhhhhhhhhhhcccccceeE---------------------
Q psy5718          83 VQFVD------------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL---------------------  117 (720)
Q Consensus        83 ~vl~G------------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v---------------------  117 (720)
                      ++|+|                        +...+|||||++.+||..+..... ..|.+                     
T Consensus        99 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~-~~~~v~vS~~EIYnE~i~DLL~~~~~  177 (359)
T 3nwn_A           99 QALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPT-HAITVRVSYLEIYNESLFDLLSTLPY  177 (359)
T ss_dssp             HHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTT-SCEEEEEEEEEEETTEEEETTSSSTT
T ss_pred             HHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCC-CcEEEEEEEEEEeccccccccccccc
Confidence            99999                        234689999999999998865432 22222                     


Q ss_pred             ----------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC--Cccccc
Q psy5718         118 ----------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE--NEKKLS  179 (720)
Q Consensus       118 ----------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~--~~~~~~  179 (720)
                                      ++|+|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|.+....  ......
T Consensus       178 ~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~  257 (359)
T 3nwn_A          178 VGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYIT  257 (359)
T ss_dssp             SCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEE
T ss_pred             cccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCccccc
Confidence                            79999999999999999999999999999999999999999999999999876543  345678


Q ss_pred             ceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhcccc
Q psy5718         180 GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTS  248 (720)
Q Consensus       180 skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iS  248 (720)
                      |+|+|||||||||++++++.|.+++|+.+||+||++||+|  ||+++. .|||||||||||||||        +||+|||
T Consensus       258 skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~is  337 (359)
T 3nwn_A          258 SKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIY  337 (359)
T ss_dssp             EEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEEC
T ss_pred             ccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeC
Confidence            9999999999999999999999999999999999999999  998765 7999999999999999        8999999


Q ss_pred             CCcccHHHHHhHHHHHHHhccc
Q psy5718         249 MESSQAEEHKKAIEYEKELGET  270 (720)
Q Consensus       249 Ps~~~~~ETlsTL~fa~rak~I  270 (720)
                      |+..+++||++||+||+|||+|
T Consensus       338 P~~~~~~ETlsTL~fA~rak~I  359 (359)
T 3nwn_A          338 GEAAQLEETLSSLRFASRMKLV  359 (359)
T ss_dssp             CSGGGHHHHHHHHHHHTTGGGC
T ss_pred             CchhhHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999987

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9

Probab=100.00  E-value=1.6e-57  Score=493.60  Aligned_cols=252  Identities=28%  Similarity=0.357  Sum_probs=203.7

Q ss_pred             CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------------CCeeeecceecC--------CCCChHHHH
Q psy5718          15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------------GGKFYLFDKVFK--------PNATQEKVY   73 (720)
Q Consensus        15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------------~~k~F~FD~VF~--------~~asQeeVY   73 (720)
                      .+|+|+|||||+++.|...+...++.++++.   .+..             ..+.|.||+|||        +.++|++||
T Consensus         1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~---~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy   77 (354)
T 3gbj_A            1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANK---VILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVF   77 (354)
T ss_dssp             -CEEEEEEECCCCHHHHHHTCCBCEEEETTE---EEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHH
T ss_pred             CCcEEEEECCCCChhhhccCCceEEEeCCCe---EEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHH
Confidence            3799999999999999888877777776654   2211             247899999994        568899999


Q ss_pred             HHhhhhcceeeecC---------------------CCCceeehhhhhhhhhhhhhhcc-cccceeE--------------
Q psy5718          74 DEAAKSIVSVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMC-EHSLMHL--------------  117 (720)
Q Consensus        74 ~~~~~plV~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~-~~~~~~v--------------  117 (720)
                      +.++.|+|+++|+|                     +...+|||||++.+||..+.... ....|.+              
T Consensus        78 ~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~D  157 (354)
T 3gbj_A           78 KCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRD  157 (354)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEE
T ss_pred             HHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeE
Confidence            99999999999999                     56789999999999999886432 2222322              


Q ss_pred             --------------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC----
Q psy5718         118 --------------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE----  173 (720)
Q Consensus       118 --------------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~----  173 (720)
                                          +||+|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|.+....    
T Consensus       158 LL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~  237 (354)
T 3gbj_A          158 LLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSG  237 (354)
T ss_dssp             TTC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSC
T ss_pred             ccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCC
Confidence                                68999999999999999999999999999999999999999999999999886432    


Q ss_pred             CcccccceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--cccc------CCcccccccchhhhhhhh----
Q psy5718         174 NEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEE------EFTVARLYISKMKSEVKN----  241 (720)
Q Consensus       174 ~~~~~~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~------~~~hIPYRdSKLTrLLqd----  241 (720)
                      ......|+|+|||||||||+.++++.|.+++|+.+||+||++||+|  +|++      +..|||||||||||||||    
T Consensus       238 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgG  317 (354)
T 3gbj_A          238 TSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGG  317 (354)
T ss_dssp             EEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHST
T ss_pred             CCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCC
Confidence            2345679999999999999999999999999999999999999999  8875      237999999999999999    


Q ss_pred             ----hhhccccCCcccHHHHHhHHHHHHHhcc
Q psy5718         242 ----LVARCTSMESSQAEEHKKAIEYEKELGE  269 (720)
Q Consensus       242 ----~mI~~iSPs~~~~~ETlsTL~fa~rak~  269 (720)
                          +||+||||+..+++||++||+||.||+.
T Consensus       318 nskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~  349 (354)
T 3gbj_A          318 NSKTAMVATVSPAADNYDETLSTLRYADRAKH  349 (354)
T ss_dssp             TCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred             CCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence                8999999999999999999999999985

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-57  Score=500.36  Aligned_cols=261  Identities=26%  Similarity=0.276  Sum_probs=212.8

Q ss_pred             CCCEEEEEeeCCCCch-hhccCCceEEEecCC-Cccceeee---C----CeeeecceecCCCCChHHHHHHhhhhcceee
Q psy5718          14 EDSIRVVCRFRPLNHS-EEKAGSKFIVKFPSG-GEENGLSL---G----GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQ   84 (720)
Q Consensus        14 ~~~IrV~vRVRPl~~~-E~~~g~~~iv~~~~~-~~~~~v~~---~----~k~F~FD~VF~~~asQeeVY~~~~~plV~~v   84 (720)
                      +|+|+|||||||+.+. |........+...++ .....+.+   .    .+.|.||+||+++++|++||+.+ .|+|+++
T Consensus        58 kgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~~lv~~~  136 (403)
T 4etp_A           58 RGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSS  136 (403)
T ss_dssp             HCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHH-HHHHHHH
T ss_pred             CCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHH-HHHHHHH
Confidence            5899999999999877 332223222322222 11112221   1    37899999999999999999986 5899999


Q ss_pred             ecC-------------------CCCceeehhhhhhhhhhhhhhccc-ccceeE---------------------------
Q psy5718          85 FVD-------------------ADQYMVSVDRLRSDHQLKASTMCE-HSLMHL---------------------------  117 (720)
Q Consensus        85 l~G-------------------~~~~~GIIpRav~~LF~~i~~~~~-~~~~~v---------------------------  117 (720)
                      |+|                   .+..+|||||++.+||..+..... .+.|.+                           
T Consensus       137 l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~  216 (403)
T 4etp_A          137 LDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTS  216 (403)
T ss_dssp             HTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC--------C
T ss_pred             hCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCccccccccc
Confidence            999                   234579999999999998875322 222222                           


Q ss_pred             ---------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCccccccee
Q psy5718         118 ---------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKL  182 (720)
Q Consensus       118 ---------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL  182 (720)
                                     ++|.|++++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|.+.+...+....|+|
T Consensus       217 ~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL  296 (403)
T 4etp_A          217 IGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTL  296 (403)
T ss_dssp             CSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTTCCEEEEEE
T ss_pred             cCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCCCCeeEEEE
Confidence                           68999999999999999999999999999999999999999999999999999888877888999


Q ss_pred             eeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC---cccccccchhhhhhhh--------hhhccccC
Q psy5718         183 YLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF---TVARLYISKMKSEVKN--------LVARCTSM  249 (720)
Q Consensus       183 ~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~---~hIPYRdSKLTrLLqd--------~mI~~iSP  249 (720)
                      +|||||||||++++++.|.+++|+.+||+||++||+|  ||+++.   .||||||||||+||||        +||+||||
T Consensus       297 ~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP  376 (403)
T 4etp_A          297 NLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISP  376 (403)
T ss_dssp             EEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECC
T ss_pred             EEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCC
Confidence            9999999999999999999999999999999999999  998765   5999999999999999        89999999


Q ss_pred             CcccHHHHHhHHHHHHHhccccccch
Q psy5718         250 ESSQAEEHKKAIEYEKELGETRLLLQ  275 (720)
Q Consensus       250 s~~~~~ETlsTL~fa~rak~Ikn~~~  275 (720)
                      +..+++||++||+||+|++.|+..|.
T Consensus       377 ~~~~~~ETl~TL~fA~rv~~~~~~~r  402 (403)
T 4etp_A          377 SSSHINETLNSLRFASKVNSTRLVSR  402 (403)
T ss_dssp             SGGGHHHHHHHHHHHHHHCCC-----
T ss_pred             chhhHHHHHHHHHHHHHHhhcccCCC
Confidence            99999999999999999999998764

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=100.00  E-value=1.6e-56  Score=493.79  Aligned_cols=253  Identities=25%  Similarity=0.296  Sum_probs=207.1

Q ss_pred             CCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-----------CCeeeecceecCCCCChHHHHHHhhhhcc
Q psy5718          13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-----------GGKFYLFDKVFKPNATQEKVYDEAAKSIV   81 (720)
Q Consensus        13 ~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-----------~~k~F~FD~VF~~~asQeeVY~~~~~plV   81 (720)
                      .+|+|+|||||||+++.|...+. .++.++++.   ++.+           +.+.|.||+||+++++|++||+.+ .|+|
T Consensus        57 l~gnIrV~vRvRP~~~~E~~~~~-~~~~~~~~~---~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v-~plv  131 (412)
T 3u06_A           57 LRDNIRVFCRIRPPLESEENRMC-CTWTYHDES---TVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMV-SPLI  131 (412)
T ss_dssp             HTCSEEEEEEECCCCGGGTTSCB-CEEEEEETT---EEEEECCC-------CCCEEECSEEECTTCCHHHHHTTT-HHHH
T ss_pred             hCCCEEEEEEcCCCCchhccCcc-eEEEecCCC---EEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHHH-HHHH
Confidence            36899999999999998865443 233333332   2222           246899999999999999999865 6999


Q ss_pred             eeeecC---------------------CCCceeehhhhhhhhhhhhhhccc-ccceeE----------------------
Q psy5718          82 SVQFVD---------------------ADQYMVSVDRLRSDHQLKASTMCE-HSLMHL----------------------  117 (720)
Q Consensus        82 ~~vl~G---------------------~~~~~GIIpRav~~LF~~i~~~~~-~~~~~v----------------------  117 (720)
                      +++|+|                     .+..+|||||++.+||..+..... .+.|.+                      
T Consensus       132 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~  211 (412)
T 3u06_A          132 QSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKD  211 (412)
T ss_dssp             HHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCC
T ss_pred             HHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCC
Confidence            999999                     457899999999999999876322 233332                      


Q ss_pred             ------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeee
Q psy5718         118 ------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLV  185 (720)
Q Consensus       118 ------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lV  185 (720)
                                  +||+|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|.+.+...+....|+|+||
T Consensus       212 ~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lV  291 (412)
T 3u06_A          212 MEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLV  291 (412)
T ss_dssp             CCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred             ceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCCCCEEEEEEEEE
Confidence                        79999999999999999999999999999999999999999999999999999888888888999999


Q ss_pred             eccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHH
Q psy5718         186 DLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAE  255 (720)
Q Consensus       186 DLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~  255 (720)
                      |||||||..    .|.+++|+.+||+||++||+|  ||+.+..|||||||||||||||        +||+||||+..+++
T Consensus       292 DLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~  367 (412)
T 3u06_A          292 DLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQ  367 (412)
T ss_dssp             ECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHH
T ss_pred             ECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHH
Confidence            999999963    468999999999999999999  9999999999999999999999        89999999999999


Q ss_pred             HHHhHHHHHHHhccccccc
Q psy5718         256 EHKKAIEYEKELGETRLLL  274 (720)
Q Consensus       256 ETlsTL~fa~rak~Ikn~~  274 (720)
                      ||++||+||+|++.|+..+
T Consensus       368 ETl~TLrfA~rv~~i~~~~  386 (412)
T 3u06_A          368 ESVKSLRFAASVNSCKMTK  386 (412)
T ss_dssp             HHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHhhccccc
Confidence            9999999999999998544

>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}

Probab=100.00  E-value=5.1e-53  Score=497.53  Aligned_cols=259  Identities=25%  Similarity=0.348  Sum_probs=193.8

Q ss_pred             CCCCCEEEEEeeC----CCCchhhccCCce-EEEecCCCc---cceeee--------CCeeeecceecCCCCChHHHHHH
Q psy5718          12 AAEDSIRVVCRFR----PLNHSEEKAGSKF-IVKFPSGGE---ENGLSL--------GGKFYLFDKVFKPNATQEKVYDE   75 (720)
Q Consensus        12 ~~~~~IrV~vRVR----Pl~~~E~~~g~~~-iv~~~~~~~---~~~v~~--------~~k~F~FD~VF~~~asQeeVY~~   75 (720)
                      .--++++||||||    |....|...|... .+..|++-.   ...+.+        ..+.|.||+||+++++|++||+.
T Consensus       371 ~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~  450 (715)
T 4h1g_A          371 ALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEE  450 (715)
T ss_dssp             SSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGG
T ss_pred             HHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHH
Confidence            3447899999999    5555554444333 333332211   112221        14799999999999999999997


Q ss_pred             hhhhcceeeecC-------------------CCCceeehhhhhhhhhhhhhhccc-ccceeE------------------
Q psy5718          76 AAKSIVSVQFVD-------------------ADQYMVSVDRLRSDHQLKASTMCE-HSLMHL------------------  117 (720)
Q Consensus        76 ~~~plV~~vl~G-------------------~~~~~GIIpRav~~LF~~i~~~~~-~~~~~v------------------  117 (720)
                      + .|+|+++|+|                   ....+|||||++++||..+..... ...|.+                  
T Consensus       451 ~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~  529 (715)
T 4h1g_A          451 L-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNP  529 (715)
T ss_dssp             T-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSSC
T ss_pred             H-HHHHHHHhCCceEEEEccCCCCCchhhccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCCC
Confidence            6 5999999999                   345789999999999999876432 222222                  


Q ss_pred             ------------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCccccc
Q psy5718         118 ------------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLS  179 (720)
Q Consensus       118 ------------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~  179 (720)
                                        ++|+|++++.|.|+++++.+|..|.++|++++|.||.+|||||+||+|+|.+.+........
T Consensus       530 ~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~~~~~~  609 (715)
T 4h1g_A          530 KIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSY  609 (715)
T ss_dssp             CCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETTTCCEEE
T ss_pred             CCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecCCCCEeE
Confidence                              78999999999999999999999999999999999999999999999999999888888889


Q ss_pred             ceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhcccc
Q psy5718         180 GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTS  248 (720)
Q Consensus       180 skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iS  248 (720)
                      |+|+|||||||||++++++.|.+++|+.+||+||++||+|  +|+.+. .|||||||||||||||        +||+|||
T Consensus       610 ~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~~is  689 (715)
T 4h1g_A          610 GTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNIS  689 (715)
T ss_dssp             EEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEEEEC
T ss_pred             EEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEEEEC
Confidence            9999999999999999999999999999999999999999  997655 8999999999999999        8999999


Q ss_pred             CCcccHHHHHhHHHHHHHhcccc
Q psy5718         249 MESSQAEEHKKAIEYEKELGETR  271 (720)
Q Consensus       249 Ps~~~~~ETlsTL~fa~rak~Ik  271 (720)
                      |+..+++||++||+||+|||+|+
T Consensus       690 p~~~~~~et~~tL~fa~r~~~i~  712 (715)
T 4h1g_A          690 PLTKDLNETINSLRFATKVNNTR  712 (715)
T ss_dssp             CBGGGHHHHHHHHHHHHHHCC--
T ss_pred             CChhhHHHHHHHHHHHHHhccce
Confidence            99999999999999999999997

>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9

Probab=99.87  E-value=8.7e-24  Score=188.82  Aligned_cols=86  Identities=28%  Similarity=0.256  Sum_probs=75.8

Q ss_pred             hhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHHHHHHhccccccc
Q psy5718         206 AKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIEYEKELGETRLLL  274 (720)
Q Consensus       206 ~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~fa~rak~Ikn~~  274 (720)
                      +.+||+||++||+|  +|+++. .||||||||||+||||        +||+||||+..+++||++||+||.||+.|+|.|
T Consensus         1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~   80 (100)
T 2kin_B            1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV   80 (100)
T ss_dssp             CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred             CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence            46899999999999  998884 8999999999999999        899999999999999999999999999999999


Q ss_pred             hhhhHH--HHHHHHHHHHH
Q psy5718         275 QTNERR--EQARKDLKGLE  291 (720)
Q Consensus       275 ~vN~~~--~~~~~~Lk~ei  291 (720)
                      .+|...  ...+++|+.+|
T Consensus        81 ~~n~~~~~~~l~~~~~~e~   99 (100)
T 2kin_B           81 SVNLELTAEEWKKKYEKEK   99 (100)
T ss_dssp             CCEEECCHHHHHHHHHHHH
T ss_pred             eeccCCCHHHHHHHHHHhh
Confidence            999843  23335555544

>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9

Probab=99.86  E-value=4.9e-23  Score=189.60  Aligned_cols=92  Identities=26%  Similarity=0.251  Sum_probs=81.8

Q ss_pred             ccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHHHHHHhccccccchhhh
Q psy5718         210 NKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNE  278 (720)
Q Consensus       210 NkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~fa~rak~Ikn~~~vN~  278 (720)
                      |+||++||+|  +|+++. .||||||||||+||+|        +||+||||+..+++||++||+||+||+.|+|.|.+|.
T Consensus         1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~   80 (117)
T 3kin_B            1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL   80 (117)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence            8999999999  999886 7999999999999999        8999999999999999999999999999999999998


Q ss_pred             H---------HH---HHHHHHHHHHHHHHHHHHHH
Q psy5718         279 R---------RE---QARKDLKGLEDTVTKELQTL  301 (720)
Q Consensus       279 ~---------~~---~~~~~Lk~ei~~Lk~EL~~l  301 (720)
                      .         +.   .+++.|+..|..|+.|+.+|
T Consensus        81 ~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~  115 (117)
T 3kin_B           81 ELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRW  115 (117)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1         12   22366777888888888777

>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}

Probab=99.07  E-value=1.2e-10  Score=120.89  Aligned_cols=215  Identities=10%  Similarity=0.108  Sum_probs=131.1

Q ss_pred             CCCEEEEEeeCCCC-chhhccCCceEEEecCCCccceeeeCCeeeecceecCCCCChH--HHHHHhhhhcceeeec-C--
Q psy5718          14 EDSIRVVCRFRPLN-HSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQE--KVYDEAAKSIVSVQFV-D--   87 (720)
Q Consensus        14 ~~~IrV~vRVRPl~-~~E~~~g~~~iv~~~~~~~~~~v~~~~k~F~FD~VF~~~asQe--eVY~~~~~plV~~vl~-G--   87 (720)
                      +|+|||||||||.. +      ..+.+.++..+  ..+..+.+.|.||+||+|.++|+  +||+.+ .++|+.+++ |  
T Consensus        23 KGnIRVFcrvrp~~~p------~~~~v~y~~~~--I~v~~~~k~f~FDRVf~p~s~Qe~~~vf~E~-~~~i~scLd~GyN   93 (298)
T 2o0a_A           23 KGTMRCYAYVMEQNLP------ENLLFDYENGV--ITQGLSEHVYKFNRVIPHLKVSEDKFFTQEY-SVYHDMCLNQKKN   93 (298)
T ss_dssp             HTCCEEEEEECGGGSC------TTEEEETTTTE--EEETTTCCEEECSEEEETTTSCHHHHHHHTT-HHHHHHHHHTTCC
T ss_pred             hCceEEEEEeccccCC------ccceeecCccc--eeecCCCceEEeeeEECccccccHHHHHHHH-HHHHHHHHhCCCc
Confidence            48999999999954 2      22345565543  11111348999999999999999  999995 899999999 8  


Q ss_pred             ------CCCceeehhhhhhhhhhhhhh-cccccceeE---------------------------------EEecCcEEEE
Q psy5718          88 ------ADQYMVSVDRLRSDHQLKAST-MCEHSLMHL---------------------------------IVFPGATERF  127 (720)
Q Consensus        88 ------~~~~~GIIpRav~~LF~~i~~-~~~~~~~~v---------------------------------~~V~gltev~  127 (720)
                            +....|=.||++..+|..... ....+.+.+                                 .+|.|++.+.
T Consensus        94 vcIfSyGQTGsGKT~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i~  173 (298)
T 2o0a_A           94 FNLISLSTTPHGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLVI  173 (298)
T ss_dssp             EEEEEECSSCCHHHHHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEEETTSCCC------CEEEECSSCEEEESCCEE
T ss_pred             eEEEEECCCCCCccHHHHHHHHHHhhhhcccceEEEEEEEEEecCCchHHhcCCCCCCCcceEEecCCCCEEecccEEEE
Confidence                  666778889999999988744 221111111                                 6888999999


Q ss_pred             ecC-hhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecC---CcccccceeeeeeccCCcccccCCCcccch
Q psy5718         128 VGK-PEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---NEKKLSGKLYLVDLAGSEKVSKTGAEGTVL  203 (720)
Q Consensus       128 V~S-~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~---~~~~~~skL~lVDLAGSEr~~kt~~~g~rl  203 (720)
                      |.+ ++|+..++..+...+      .|.   +.-.|+.+.+...+..   +.....--++|+.+.-..-.          
T Consensus       174 V~~~~edv~~~~~~~~~~~------~~~---~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~e~~~~~~~----------  234 (298)
T 2o0a_A          174 IENGLEDLPLNFSCDEHPN------LPH---SGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLKSI----------  234 (298)
T ss_dssp             ESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-------CCCEEEEEEEECSHHHH----------
T ss_pred             ccccHHHHHHHhhcccccc------cCC---CCceEEEEEEecCcccccccCCCCceEEEEEEeCCHHHH----------
Confidence            999 999988884332221      111   2345556655553321   11223445778776643211          


Q ss_pred             HHhhhhccCCccccCcccccCCcccccccchhhhhhhh-------hhhccccCCcccHHHHHhHHHHHHHhccccccch
Q psy5718         204 DEAKNINKSLSADGAGKLEEEFTVARLYISKMKSEVKN-------LVARCTSMESSQAEEHKKAIEYEKELGETRLLLQ  275 (720)
Q Consensus       204 ~E~~~INkSL~aLg~VaL~~~~~hIPYRdSKLTrLLqd-------~mI~~iSPs~~~~~ETlsTL~fa~rak~Ikn~~~  275 (720)
                         ..+|++.        ..+    .+-.|+++-+|+.       ++++++.-+..+    -.-|..+++...++|.-.
T Consensus       235 ---~~l~~~~--------~~~----~~~~spi~~il~~ll~~tks~~~~~l~~~~~~----~~lL~~s~~i~~~~~~~~  294 (298)
T 2o0a_A          235 ---EQFDKSI--------FKK----ESCETPIALVLKKLISDTKSFFLLNLNDSKNV----NKLLTISEEVQTQLCKRK  294 (298)
T ss_dssp             ---HHHHHHH--------HTC-----CCCSHHHHHHHHHHHHSBCEEEEEECCGGGH----HHHHHHHHHHHHHTC---
T ss_pred             ---HHHHhhc--------ccc----cccCCcHHHHHHHHHhcCcceEEEEecCCCch----hHHHHHHHHhhcccCccc
Confidence               0111111        111    1223666666665       777877654332    237888888888877543

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.20  E-value=0.0012  Score=82.07  Aligned_cols=9  Identities=22%  Similarity=0.353  Sum_probs=5.5

Q ss_pred             hhhccccCC
Q psy5718         242 LVARCTSME  250 (720)
Q Consensus       242 ~mI~~iSPs  250 (720)
                      .+|-||-|.
T Consensus       679 hfvRCIkPN  687 (1184)
T 1i84_S          679 NFVRCIIPN  687 (1184)
T ss_dssp             EECCEECCC
T ss_pred             CceeeeCCC
Confidence            566666554

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.99  E-value=0.0017  Score=80.63  Aligned_cols=22  Identities=5%  Similarity=-0.032  Sum_probs=0.0

Q ss_pred             hhhHHHHHHHhhhhhhHhhHhh
Q psy5718         542 EEFTVARLYISKMKWRNGETVK  563 (720)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~~~~~  563 (720)
                      ++.+..+--+.++..+.+.+-.
T Consensus       990 ~el~~lee~l~~l~~e~~~le~ 1011 (1184)
T 1i84_S          990 DDILIMEDQNNKLTKERKLLEE 1011 (1184)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.32  E-value=0.43  Score=48.93  Aligned_cols=37  Identities=11%  Similarity=0.164  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhh
Q psy5718         424 QLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQK  460 (720)
Q Consensus       424 ~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~  460 (720)
                      .++.++..+..+...+.+++.+++..++++...++..
T Consensus        94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~  130 (256)
T 3na7_A           94 SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDL  130 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444443333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.28  E-value=0.21  Score=51.32  Aligned_cols=65  Identities=22%  Similarity=0.269  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         428 EMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTEL  492 (720)
Q Consensus       428 el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el  492 (720)
                      ++..|+.|.+.++.++..++..+.++....+.....++.....++.+..++..+.+.+.+.-.++
T Consensus        91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~  155 (256)
T 3na7_A           91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNI  155 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67778888888888888888888888888888888888888888888888776666555444443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.95  E-value=0.5  Score=63.69  Aligned_cols=107  Identities=14%  Similarity=0.180  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q psy5718         395 GEMTRLTQENESAKEEVKELITTA------RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKN  468 (720)
Q Consensus       395 ~Ei~~~~q~~ekLkeq~eell~~~------~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~  468 (720)
                      ++++.+..++...++..++.++.+      +..+++++.++...++++.+.+++++++...|.+|..+|+....+.+.+.
T Consensus      1983 ~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~ 2062 (3245)
T 3vkg_A         1983 VQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIK 2062 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555566665555444443      35667788888888888889999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5718         469 KEFETLTEELTLKQTTLNTTSTELQQIKDMSNH  501 (720)
Q Consensus       469 ~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~  501 (720)
                      .+.+.....|.....-+..|..|-..=.+....
T Consensus      2063 ~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A         2063 TESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence            888888888777777777777766555444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.74  E-value=2  Score=58.02  Aligned_cols=33  Identities=12%  Similarity=0.017  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHhhhcccccccchhHHHHHHhhhcc
Q psy5718         639 EKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKG  673 (720)
Q Consensus       639 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  673 (720)
                      +..|..  -.+.+.++++-..+...=++||+-++-
T Consensus      2371 ~~sK~~--s~eI~~kl~~a~~te~~I~~~R~~Yrp 2403 (3245)
T 3vkg_A         2371 ETLKKE--TTEIALKVEETETVMQEISEVSALYNP 2403 (3245)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            444444  555555555555555555555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.29  E-value=0.3  Score=55.44  Aligned_cols=70  Identities=11%  Similarity=0.089  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         425 LQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQ  494 (720)
Q Consensus       425 lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~  494 (720)
                      +..++..++++.+....+.....++..++...|++-.++++...+.++...+.+.+...++..+..++.+
T Consensus       507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~  576 (597)
T 3oja_B          507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ  576 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444333333333333333333333333333333333333333333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.27  E-value=1  Score=50.95  Aligned_cols=13  Identities=46%  Similarity=0.455  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHHH
Q psy5718         467 KNKEFETLTEELT  479 (720)
Q Consensus       467 ~~~e~~~l~~el~  479 (720)
                      +.++++.+..+..
T Consensus       535 ~~~~~~~~~~~~~  547 (597)
T 3oja_B          535 KQKETEDLEQENI  547 (597)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhcchhhHHhhhH
Confidence            3333333333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=93.90  E-value=5.3  Score=39.20  Aligned_cols=105  Identities=18%  Similarity=0.238  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhh
Q psy5718         381 KLITTARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQK  460 (720)
Q Consensus       381 k~~ee~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~  460 (720)
                      +-++...+....|...++++..+++.++..+.............||.++..++..++..+.++++++|+--.|.-.....
T Consensus        49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~  128 (189)
T 2v71_A           49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT  128 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            33444555556666678888888888888887777777778889999999999999999999999999988888888887


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         461 SQEVETKNKEFETLTEELTLKQTTL  485 (720)
Q Consensus       461 ~~e~e~~~~e~~~l~~el~~~~~~~  485 (720)
                      +--+++....+...-+..+=+.+.+
T Consensus       129 ~~SleD~e~kln~aiEr~alLE~El  153 (189)
T 2v71_A          129 IMSLEDFEQRLNQAIERNAFLESEL  153 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777766666666555444433

>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}

Probab=93.31  E-value=0.087  Score=44.23  Aligned_cols=54  Identities=17%  Similarity=0.276  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhhcccccccchhHHHHHHhhhccchHhHH
Q psy5718         626 EKDEEINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLEDTVT  679 (720)
Q Consensus       626 ~lrdei~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~  679 (720)
                      .||.+|..||-+|.-|..+|.+......=-++......-+||+.||.+|.--|+
T Consensus        26 ~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~a   79 (90)
T 4b6x_A           26 ALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFA   79 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999988888887777777777778999999999976543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.01  E-value=1.4  Score=54.21  Aligned_cols=47  Identities=17%  Similarity=0.191  Sum_probs=24.6

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy5718         432 LTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEEL  478 (720)
Q Consensus       432 lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el  478 (720)
                      +..|+.+++..++++...++++...|..-.++.+.+...++++.++|
T Consensus       975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L 1021 (1080)
T 2dfs_A          975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555544444444433

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=92.92  E-value=5  Score=36.04  Aligned_cols=89  Identities=19%  Similarity=0.240  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy5718         391 EQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKE  470 (720)
Q Consensus       391 ~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e  470 (720)
                      ..|....++...+++.++..++.....+....-.||.++..|+..++..+.++++++|+=..|.-...-.+--+++....
T Consensus         6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k   85 (111)
T 2v66_B            6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQR   85 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHH
Confidence            44666778888888999888888888777888899999999999999999999999999888888887777777776665


Q ss_pred             HHHHHHHHH
Q psy5718         471 FETLTEELT  479 (720)
Q Consensus       471 ~~~l~~el~  479 (720)
                      +...-+.-+
T Consensus        86 ~n~aiErna   94 (111)
T 2v66_B           86 LNQAIERNA   94 (111)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555544433

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=92.74  E-value=3.1  Score=36.71  Aligned_cols=65  Identities=18%  Similarity=0.199  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q psy5718         412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTE  476 (720)
Q Consensus       412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~  476 (720)
                      ++.......++..|+..+..+..+.+.+.+.+.+..+.|++-......--.+|..+++.++.|-+
T Consensus        36 e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEE  100 (101)
T 3u1c_A           36 EERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEE  100 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            44455566666778888888888888888888888888887766666666677777777776643

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=91.60  E-value=5.1  Score=49.19  Aligned_cols=31  Identities=10%  Similarity=0.191  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5718         424 QLQGEMTRLTQENESAKEEVKEVLQALEELA  454 (720)
Q Consensus       424 ~lq~el~~lq~e~~~~keevke~~qaleel~  454 (720)
                      .+..++..|+++++..++++..+....+++.
T Consensus       981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~le 1011 (1080)
T 2dfs_A          981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=91.41  E-value=2.3  Score=35.96  Aligned_cols=73  Identities=15%  Similarity=0.199  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         424 QLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIK  496 (720)
Q Consensus       424 ~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~  496 (720)
                      .+...|..|+.+.+.+.+.+......|++......+...+|..+++.+..+.++|......+......|+.-.
T Consensus         3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae   75 (81)
T 1ic2_A            3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888899999999999999999988899999999999999999999999999999888888877643

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=91.23  E-value=0.55  Score=35.97  Aligned_cols=47  Identities=28%  Similarity=0.361  Sum_probs=43.6

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5718         455 VNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNH  501 (720)
Q Consensus       455 ~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~  501 (720)
                      ..|||--++||.+++|+-.|+.||..-+..+.-|+.|-..+|++-.+
T Consensus         3 asYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~   49 (54)
T 1deb_A            3 ASYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ   49 (54)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence            47999999999999999999999999999999999999999988544

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=90.29  E-value=2.9  Score=36.95  Aligned_cols=67  Identities=25%  Similarity=0.336  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy5718         385 TARRDYEQLQGEMTRLTQENESAKEEV---KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE  451 (720)
Q Consensus       385 e~~~l~~ql~~Ei~~~~q~~ekLkeq~---eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qale  451 (720)
                      .++-.+.|||.|-..+.+.++-||+.+   +|.++...|++.+...++.++......++.++.++...|.
T Consensus        13 KAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~   82 (103)
T 4h22_A           13 KAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK   82 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778899999999999999999988   7778888888888888888888777777777777655554

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=90.07  E-value=7  Score=34.26  Aligned_cols=64  Identities=20%  Similarity=0.256  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy5718         412 KELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLT  475 (720)
Q Consensus       412 eell~~~~~~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~  475 (720)
                      ++.......++..++..+..++.+.+.+.+.+.+....|++-......--.+|..+++.++.|-
T Consensus        36 e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE   99 (101)
T 3u59_A           36 EDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3333444555566777777777777777777777777777766666655666777777666553

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.63  E-value=2.9  Score=39.01  Aligned_cols=21  Identities=10%  Similarity=0.248  Sum_probs=8.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q psy5718         461 SQEVETKNKEFETLTEELTLK  481 (720)
Q Consensus       461 ~~e~e~~~~e~~~l~~el~~~  481 (720)
                      .++++++.+++..|..++..+
T Consensus       109 ~~e~~~l~~~~~~l~~~~~~l  129 (138)
T 3hnw_A          109 AKEIKELKSEINKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444433

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=87.36  E-value=7.9  Score=34.83  Aligned_cols=41  Identities=24%  Similarity=0.369  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5718         468 NKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE  508 (720)
Q Consensus       468 ~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e  508 (720)
                      .+.++.|..|+..+...+.+...|+++|+..+..+.-||+.
T Consensus        70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~  110 (121)
T 3mq7_A           70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD  110 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence            33466666666666667777777777777777777777654

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=87.34  E-value=6.9  Score=33.47  Aligned_cols=79  Identities=8%  Similarity=0.194  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5718         423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNH  501 (720)
Q Consensus       423 e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~  501 (720)
                      +.|+.++..+..++....-++..+..+++.+..+|+.-...-.....++..|+..+....-.-.+|+..++.|++-.+-
T Consensus         3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f   81 (86)
T 3swk_A            3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF   81 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666666666677777777766555555555566666666655555555566666665554443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=84.27  E-value=24  Score=32.12  Aligned_cols=24  Identities=13%  Similarity=0.221  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHH
Q psy5718         422 YEQLQGEMTRLTQENESAKEEVKE  445 (720)
Q Consensus       422 ~e~lq~el~~lq~e~~~~keevke  445 (720)
                      +..+..+.+.|+...++-.+-..+
T Consensus        43 ~~~l~~Ek~~L~~qL~~E~~~l~e   66 (129)
T 2fxo_A           43 MVSLLQEKNDLQLQVQAEQDNLAD   66 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444555555444444443333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=84.21  E-value=30  Score=33.16  Aligned_cols=67  Identities=21%  Similarity=0.273  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy5718         442 EVKEVLQALEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINE  508 (720)
Q Consensus       442 evke~~qaleel~~n~d~~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e  508 (720)
                      ++..+...|+.-.-+..+-+..+.+..-.+..|..|+.........+..+..+|.+..+..-|-.+-
T Consensus        70 e~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~  136 (168)
T 3o0z_A           70 DYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNN  136 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333344333344444444445555555555555555555555555555555554444444333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=84.00  E-value=34  Score=33.50  Aligned_cols=61  Identities=18%  Similarity=0.359  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5718         385 TARRDYEQLQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKE  445 (720)
Q Consensus       385 e~~~l~~ql~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke  445 (720)
                      +....|.+++.+.+........|...|+.-+..+......|+..+.+|..|.+..|.....
T Consensus        21 ~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~   81 (189)
T 2v71_A           21 KYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH   81 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566777788888888888888887777777777777777777777777766655443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=83.82  E-value=7.5  Score=36.20  Aligned_cols=30  Identities=30%  Similarity=0.386  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         464 VETKNKEFETLTEELTLKQTTLNTTSTELQ  493 (720)
Q Consensus       464 ~e~~~~e~~~l~~el~~~~~~~~~l~~el~  493 (720)
                      ++...++++.+.+++..+...+..|++++.
T Consensus       105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A          105 AESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444443

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=83.62  E-value=26  Score=38.97  Aligned_cols=48  Identities=17%  Similarity=0.137  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5718         393 LQGEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAK  440 (720)
Q Consensus       393 l~~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~k  440 (720)
                      +|.++..++.++++.+..-....+.-+..+...|.+...+++||++.+
T Consensus         7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaik   54 (497)
T 3iox_A            7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIK   54 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            444555555555555555544455545555555555555555555555

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=82.47  E-value=7.3  Score=35.47  Aligned_cols=51  Identities=20%  Similarity=0.273  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy5718         395 GEMTRLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKE  445 (720)
Q Consensus       395 ~Ei~~~~q~~ekLkeq~eell~~~~~~~e~lq~el~~lq~e~~~~keevke  445 (720)
                      ..|..+..+++.|+..++.+...+.+....|...++.|..+++..+-.+..
T Consensus        15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~   65 (120)
T 3i00_A           15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQ   65 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777777777777777778888888888888888888887777654433

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=82.31  E-value=18  Score=34.11  Aligned_cols=52  Identities=19%  Similarity=0.145  Sum_probs=24.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy5718         460 KSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEMLT  511 (720)
Q Consensus       460 ~~~e~e~~~~e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~~  511 (720)
                      |++.++..+-|+..|.-++.....++..++.|...|=+-.-.++-+=++-||
T Consensus        94 K~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN  145 (152)
T 3a7p_A           94 KNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMN  145 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555555555555555554444444444444444444

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=82.10  E-value=16  Score=33.31  Aligned_cols=35  Identities=14%  Similarity=0.256  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy5718         423 EQLQGEMTRLTQENESAKEEVKEVLQALEELAVNY  457 (720)
Q Consensus       423 e~lq~el~~lq~e~~~~keevke~~qaleel~~n~  457 (720)
                      -++...+..|+.+.++.+....-++..|.+....|
T Consensus        39 ~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~   73 (129)
T 3tnu_B           39 SEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG   73 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444

>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}

Probab=81.75  E-value=51  Score=33.94  Aligned_cols=13  Identities=0%  Similarity=0.089  Sum_probs=7.2

Q ss_pred             hhCCCCCCcchhh
Q psy5718         579 SIAPTPESAPASI  591 (720)
Q Consensus       579 ~~~~~~~~~~~~~  591 (720)
                      .-+.+|+..+|.|
T Consensus       191 ~lr~~l~~~~e~l  203 (273)
T 3s84_A          191 DVRGNLRGNTEGL  203 (273)
T ss_dssp             HHHHTSSSCHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3344566666666

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=81.20  E-value=23  Score=30.00  Aligned_cols=41  Identities=20%  Similarity=0.304  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5718         470 EFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEML  510 (720)
Q Consensus       470 e~~~l~~el~~~~~~~~~l~~el~~l~~~~~~~~kr~~e~~  510 (720)
                      ++..|..+..+..+.-..|..|.++|++--+.-..||..++
T Consensus        35 kN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL   75 (81)
T 2jee_A           35 KNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333444444444444444444444433

>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A

Probab=80.58  E-value=11  Score=36.44  Aligned_cols=154  Identities=16%  Similarity=0.186  Sum_probs=83.1

Q ss_pred             chhhhHHHHHHHhhhhhhHhhHhhhhcccccchhHHHHhhhCCCCCCcchhhcccCccccccccccchH----HhhhHHH
Q psy5718         540 LEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNE----ERQKLEE  615 (720)
Q Consensus       540 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  615 (720)
                      .|.=-++++-|||+++.=.+..|..-.+-+|+.-      -+..+.++.|.+..-.......|.-+..+    .....++
T Consensus         9 ~e~v~~~~w~Y~~~l~~~a~~~ve~l~~seL~qq------L~~~l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~~~   82 (185)
T 3r2p_A            9 WDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQ------LNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEG   82 (185)
T ss_dssp             THHHHHHHHHHTHHHHHHHHHHHHHHHHSHHHHH------TTCCCCTTCSCSSCHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHH------HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            5777889999999999999988887665444322      24455556665511111101010111111    1133444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhhhcccccccchhHHHHHHhhhccchH---hHHHHHH-----Hhh
Q psy5718         616 ERERLYQQLDEKDEEINQQSQYA-EKLKEQIMEQEEVSGLLVCGQTNERREQARKDLKGLED---TVTKELQ-----TLH  686 (720)
Q Consensus       616 ~~~~~~~q~~~lrdei~~k~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---tv~~el~-----~l~  686 (720)
                      ++..|.+.|+.+|..+.-.-..+ .++...+++..  .+|.  -+..+-|++++++...|-.   +++.+|+     .+-
T Consensus        83 Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr--~~l~--Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e  158 (185)
T 3r2p_A           83 LRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYR--QKVE--PLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVD  158 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777776666665554444 23333211111  1222  2445667777766655554   4445554     345


Q ss_pred             hhHHHH---HHHHHhhhhcC
Q psy5718         687 NLRKLF---VQDQVTSSQRW  703 (720)
Q Consensus       687 ~l~~~~---~~~~~~~~~~~  703 (720)
                      +||..|   ++++.+.+-..
T Consensus       159 ~lk~~l~Py~ee~k~kl~~~  178 (185)
T 3r2p_A          159 ALRTHLAPYSDELRQRLAAR  178 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHH
Confidence            566664   67777766443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	720
d1bg2a_	323	c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId	1e-22
d1f9va_	342	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	1e-15
d1goja_	354	c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5	9e-14
d1goja_	354	c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5	1e-13
d2zfia1	349	c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus),	9e-14
d2zfia1	349	c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus),	5e-11
d1ry6a_	330	c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu	9e-13
d1ry6a_	330	c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu	7e-09
d1v8ka_	362	c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c	1e-12
d1v8ka_	362	c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c	2e-12
d1x88a1	345	c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),	7e-12
d1x88a1	345	c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),	4e-09
d1sdma_	364	c.37.1.9 (A:) Kinesin heavy chain-like protein {Po	2e-10
d1sdma_	364	c.37.1.9 (A:) Kinesin heavy chain-like protein {Po	2e-09
d2ncda_	368	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	7e-08
d2ncda_	368	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	1e-07

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.3 bits (241), Expect = 1e-22
 Identities = 107/265 (40%), Positives = 136/265 (51%), Gaps = 67/265 (25%)

Query: 13  AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFY--------------L 58
           AE +I+V+CRFRPLN SE   G K+I KF     E+ + +  K Y              +
Sbjct: 3   AECNIKVMCRFRPLNESEVNRGDKYIAKFQG---EDTVVIASKPYAFDRVFQSSTSQEQV 59

Query: 59  FDKVFKP----------------------------------------------NATQEKV 72
           ++   K                                                      
Sbjct: 60  YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYS 119

Query: 73  YDEAAKSIVSVQFVDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPE 132
            DE  +  + V + +   Y+  +  L    +   S   + + +  +   G TERFV  P+
Sbjct: 120 MDENLEFHIKVSYFEI--YLDKIRDLLDVSKTNLSVHEDKNRVPYV--KGCTERFVCSPD 175

Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK 192
           EV + I+EGK+NRH+AVTNMNEHSSRSHS+FLINVKQEN + E+KLSGKLYLVDLAGSEK
Sbjct: 176 EVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEK 235

Query: 193 VSKTGAEGTVLDEAKNINKSLSADG 217
           VSKTGAEG VLDEAKNINKSLSA G
Sbjct: 236 VSKTGAEGAVLDEAKNINKSLSALG 260

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

 Score = 76.6 bits (187), Expect = 1e-15
 Identities = 52/270 (19%), Positives = 80/270 (29%), Gaps = 70/270 (25%)

Query: 16  SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL---------GGKFYLFDKVFKPN 66
           +IRV CR RP   + E + +  I            S+             + FDK+F   
Sbjct: 2   NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 61

Query: 67  ATQEKVYDEAAKSIVSVQF----VDADQYMVSVDR-------------------LRSDHQ 103
            T   V+ E  + + S                  +                       ++
Sbjct: 62  DTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 121

Query: 104 LKASTMCEHSLMHLIVFPG---------ATERFVGKPEEVFEVIEEGKANRHIAVTNMNE 154
           LK            I                        +   I   +  +   +TN+  
Sbjct: 122 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 181

Query: 155 H-----------------------------SSRSHSVFLINVKQENLENEKKLSGKLYLV 185
                                         SS SHS+F+I++   N +      G L LV
Sbjct: 182 CKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLV 241

Query: 186 DLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
           DLAGSE+++ +   G  L E +NINKSLS 
Sbjct: 242 DLAGSERINVSQVVGDRLRETQNINKSLSC 271

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score = 71.1 bits (173), Expect = 9e-14
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 12  AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKF-YLFDKVFKPNATQE 70
           ++ +SI+VV RFRP N  E ++G + IV F         S   +  + FD+VF  +  Q 
Sbjct: 2   SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQS 61

Query: 71  KVYDEAAKSIVSVQFVDADQYMVSVDRLRSDHQLKASTMCEHSLMH 116
            ++D + K  V       + Y  +V         K+ TM   S+  
Sbjct: 62  DIFDFSIKPTVDDIL---NGYNGTVFAYGQTGAGKSYTMMGTSIDD 104

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score = 70.4 bits (171), Expect = 1e-13
 Identities = 55/100 (55%), Positives = 70/100 (70%)

Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
           +   G  E +V   +EV+EV+  G   R +A TNMN+ SSRSHS+F+I + Q+N+E    
Sbjct: 166 VYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSA 225

Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
            SG+L+LVDLAGSEKV KTGA G  L+EAK INKSLSA G
Sbjct: 226 KSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALG 265

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

 Score = 70.8 bits (172), Expect = 9e-14
 Identities = 48/129 (37%), Positives = 68/129 (52%), Gaps = 5/129 (3%)

Query: 91  YMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVT 150
           Y   V  L +        + EH L+   V    ++  V    ++ ++++ G   R +A T
Sbjct: 147 YCERVRDLLNPKNKGNLRVREHPLLGPYVED-LSKLAVTSYNDIQDLMDSGNKPRTVAAT 205

Query: 151 NMNEHSSRSHSVFLINVKQENLENE----KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEA 206
           NMNE SSRSH+VF I   Q+  + E     +   K+ LVDLAGSE+   TGA+GT L E 
Sbjct: 206 NMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEG 265

Query: 207 KNINKSLSA 215
            NINKSL+ 
Sbjct: 266 ANINKSLTT 274

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

 Score = 62.7 bits (151), Expect = 5e-11
 Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 16  SIRVVCRFRPLNHSEEKAGSKFIVKFPSGG----EENGLSLGGKFYLFDKVFKPN----- 66
           S++V  R RP N  E    SK I++                  K + FD  +  +     
Sbjct: 2   SVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPED 61

Query: 67  ---ATQEKVYDEAAKSIVSVQFVDADQYMVSVDRLRSD 101
              A+Q++VY +  + ++   F   +  + +  +  + 
Sbjct: 62  INYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAG 99

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 67.7 bits (164), Expect = 9e-13
 Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 12/123 (9%)

Query: 17  IRVVCRFRPLNHSEEKAGSKFIVKF----------PSGGEENGLSLGGKFYLFDKVFKPN 66
           I+VV R RPL+  E+K     I+            P    +    +    ++ DKVF   
Sbjct: 2   IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61

Query: 67  ATQEKVYDEAAKSIVSVQFVDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATER 126
                VY+   K ++   +   +  + S          K  TM           PG  + 
Sbjct: 62  VDNFTVYENTIKPLIIDLY--ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQY 119

Query: 127 FVG 129
             G
Sbjct: 120 AAG 122

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 55.8 bits (133), Expect = 7e-09
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 119 VFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKL 178
           V        V   EE+   + +G   R I V + N+ SSRSH++  I++K     N+   
Sbjct: 172 VVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD---INKNTS 228

Query: 179 SGKLYLVDLAGSEKVSKTGAEG-TVLDEAKNINKSLSA 215
            GK+  +DLAGSE+ + T ++      +  NIN+SL A
Sbjct: 229 LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLA 266

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

 Score = 67.6 bits (164), Expect = 1e-12
 Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 10/111 (9%)

Query: 1   MSNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE----------ENGL 50
           M  +     +   E  I V  R RPLN  E       ++  PS             +   
Sbjct: 16  MECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTK 75

Query: 51  SLGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVDADQYMVSVDRLRSD 101
            L  + + FD  F   A+ E VY   A+ +V   F        +  +  S 
Sbjct: 76  YLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSG 126

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

 Score = 66.8 bits (162), Expect = 2e-12
 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 6/135 (4%)

Query: 84  QFVDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKA 143
             V    + +   ++      KA           +   G  E  V   ++V ++I  G A
Sbjct: 168 LEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSA 227

Query: 144 NRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTV- 202
            R    T  N +SSRSH+ F I ++ +      +L GK  LVDLAG+E+ + T +     
Sbjct: 228 CRTSGQTFANSNSSRSHACFQILLRTKG-----RLHGKFSLVDLAGNERGADTSSADRQT 282

Query: 203 LDEAKNINKSLSADG 217
             E   INKSL A  
Sbjct: 283 RMEGAEINKSLLALK 297

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 7e-12
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 17 IRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG-------KFYLFDKVFKPNATQ 69
          I+VV R RP N +E KA +  IV+     +E  +  GG       K Y FD VF  +  Q
Sbjct: 2  IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 61

Query: 70 EKVYDEAAKSIV 81
            VY      I+
Sbjct: 62 IDVYRSVVCPIL 73

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 4e-09
 Identities = 52/153 (33%), Positives = 75/153 (49%), Gaps = 6/153 (3%)

Query: 70  EKVYDEAAKSIVSVQFVDADQYMVSVDRL--RSDHQLKASTMCEHSLMHLIVFPGATERF 127
           EK+ D   +  V V  ++     +  D L   SD   +     +      ++  G  E  
Sbjct: 128 EKLTDNGTEFSVKVSLLEIYNEEL-FDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEIT 186

Query: 128 VGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---NEKKLSGKLYL 184
           V   +EV++++E+G A R  A T MN +SSRSHSVF + +  +       E    GKL L
Sbjct: 187 VHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNL 246

Query: 185 VDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
           VDLAGSE + ++GA      EA NIN+SL   G
Sbjct: 247 VDLAGSENIGRSGAVDKRAREAGNINQSLLTLG 279

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 17 IRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG--KFYLFDKVFKPNATQEKVYD 74
          IRV CR RPL   E  A  +  ++         L      K +++D+VF  NATQ+ V++
Sbjct: 2  IRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFE 61

Query: 75 EAAKSIVSV 83
          +    + S 
Sbjct: 62 DTKYLVQSA 70

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 58.1 bits (139), Expect = 2e-09
 Identities = 45/121 (37%), Positives = 64/121 (52%)

Query: 95  VDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNE 154
           VD L      +     +     ++     T   +   EE+  +I+ G   RH   T MNE
Sbjct: 137 VDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNE 196

Query: 155 HSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
            SSRSH +  + ++  NL+ +    GKL  VDLAGSE+V K+G+ G  L EA++INKSLS
Sbjct: 197 QSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLS 256

Query: 215 A 215
           A
Sbjct: 257 A 257

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 53.0 bits (126), Expect = 7e-08
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 17  IRVVCRFRPLNHSEEKAGSKFI-------VKFPSGGEENGLSLGGKFYLFDKVFKPNATQ 69
           IRV CR RP   SEE              V+  S   +    +G + + FD+VF P ++Q
Sbjct: 47  IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 106

Query: 70  EKVYDEAAKSI 80
             +++  +  I
Sbjct: 107 SDIFEMVSPLI 117

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.8 bits (123), Expect = 1e-07
 Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 98  LRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSS 157
           L S+ Q         +  + I     TE  V  P  +  ++   K NR  A T  NE SS
Sbjct: 190 LLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSS 249

Query: 158 RSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
           RSH+V  + +   + E ++   G + LVDLA     S++    T + E KNIN+SLS 
Sbjct: 250 RSHAVTKLELIGRHAEKQEISVGSINLVDLA----GSESPKTSTRMTETKNINRSLSE 303

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	720
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	100.0
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	100.0
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	100.0
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	100.0
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	100.0
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	100.0
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	100.0
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	100.0
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	81.36

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=2.4e-58  Score=500.50  Aligned_cols=280  Identities=29%  Similarity=0.320  Sum_probs=239.9

Q ss_pred             CEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-----CCeeeecceecCCCCChHHHHHHhhhhcceeeecC---
Q psy5718          16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-----GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD---   87 (720)
Q Consensus        16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-----~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G---   87 (720)
                      +|+|+|||||+++.|...+...++...++.   ++..     .++.|.||+||+++++|++||+.+ .|+|+++|+|   
T Consensus         1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~---~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~v-~~lv~~~l~G~n~   76 (364)
T d1sdma_           1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEF---TVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNV   76 (364)
T ss_dssp             CCEEEEEECCCCHHHHHTTCCBCEEECSTT---EEEEECSSSSEEEEECSEEECTTCCHHHHHHTT-THHHHHHHTTCEE
T ss_pred             CeEEEEEcCCCChhhcccCCCCeEEeCCCC---eEEecCCCCCceEEECCeecCCCCCHHHHHHHH-HHHHHHHhcCCce
Confidence            589999999999999877777777776655   3322     258999999999999999999975 8999999998   


Q ss_pred             ------------------CCCceeehhhhhhhhhhhhhhcccccceeE--------------------------------
Q psy5718          88 ------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL--------------------------------  117 (720)
Q Consensus        88 ------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v--------------------------------  117 (720)
                                        +..++|||||++.+||..+........|.+                                
T Consensus        77 ~i~aYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~  156 (364)
T d1sdma_          77 CIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDS  156 (364)
T ss_dssp             EEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECT
T ss_pred             eeeccccCCCCcccccccCccccchhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCcccccccccceeecc
Confidence                              667899999999999999987665554443                                


Q ss_pred             ---EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCcccc
Q psy5718         118 ---IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVS  194 (720)
Q Consensus       118 ---~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr~~  194 (720)
                         ++|+|++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.+..+.....|+|+|||||||||..
T Consensus       157 ~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~~~~~~kl~~vDLAGsEr~~  236 (364)
T d1sdma_         157 KGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVK  236 (364)
T ss_dssp             TSCEEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCSCCC
T ss_pred             cCccccccceeeeeCCHHHHHHHhhccceeeccccccccccccccceEEEEEEEEeccCcceeeeEEEEeechhhccccc
Confidence               78999999999999999999999999999999999999999999999999999998888899999999999999999


Q ss_pred             cCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHHHH
Q psy5718         195 KTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIEYE  264 (720)
Q Consensus       195 kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~fa  264 (720)
                      ++++.|.+++|+.+||+||++||+|  +|+++..|||||+||||+||+|        +||+||||+..+++||++||+||
T Consensus       237 ~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~~~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa  316 (364)
T d1sdma_         237 KSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYA  316 (364)
T ss_dssp             C---------CCCTTCHHHHHHHHHHHHHHHTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHH
T ss_pred             cccccCceeeeccccccchhhHHHHHHHHHcCCCcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHHHHHHHHH
Confidence            9999999999999999999999999  9999999999999999999999        89999999999999999999999


Q ss_pred             HHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         265 KELGETRLLLQTNERREQARKDLKGLEDTVTKELQT  300 (720)
Q Consensus       265 ~rak~Ikn~~~vN~~~~~~~~~Lk~ei~~Lk~EL~~  300 (720)
                      +||+.|+|.|.+|... .++..|+.++..|+.++..
T Consensus       317 ~~ak~i~n~p~~n~~~-~~~~~l~~~i~~l~~~~~~  351 (364)
T d1sdma_         317 SRVRSIVNDPSKNVSS-KEVARLKKLVSYWKEQAGR  351 (364)
T ss_dssp             HHHTTCCCCCCCCEEC-HHHHHHHTTTTCC------
T ss_pred             HHHhhcccCCcccCCH-HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999744 3456677777777666543

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=100.00  E-value=2.7e-56  Score=482.44  Aligned_cols=264  Identities=32%  Similarity=0.426  Sum_probs=244.0

Q ss_pred             CCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC----CeeeecceecCCCCChHHHHHHhhhhcceeeecC-
Q psy5718          13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG----GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD-   87 (720)
Q Consensus        13 ~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~----~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G-   87 (720)
                      +..+|+|+|||||+++.|...+...++.+.+.+   ++.+.    .+.|.||+||+++++|++||+.++.|+|+++|+| 
T Consensus         3 ~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~---~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~   79 (354)
T d1goja_           3 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPD---TCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGY   79 (354)
T ss_dssp             SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTT---EEEECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTC
T ss_pred             CCCCEEEEEEcCCCChHHHhcCCceEEEEECCC---eEEEcCCCCcceEECCeEcCCCCCHHHHHHHHHHHHHHHhhccC
Confidence            458899999999999999988888888887766   44443    3689999999999999999999999999999998 


Q ss_pred             ------------------------CCCceeehhhhhhhhhhhhhhcccccceeE--------------------------
Q psy5718          88 ------------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL--------------------------  117 (720)
Q Consensus        88 ------------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v--------------------------  117 (720)
                                              ++..+|||||++.+||..+........|.+                          
T Consensus        80 n~ti~aYG~tgSGKT~Tm~G~~~~~~~~~Giipr~l~~l~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~l~~~  159 (354)
T d1goja_          80 NGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVH  159 (354)
T ss_dssp             CEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEE
T ss_pred             ceeEEecccCCCCcceeeecccccCcccceecchhHHHHhhhhcccccCceEEEEeehhheecceEeecccccccceeee
Confidence                                    345689999999999999877665544443                          


Q ss_pred             ------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCc
Q psy5718         118 ------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSE  191 (720)
Q Consensus       118 ------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSE  191 (720)
                            +++.|++++.|.+++++..++..|..+|.+++|.+|..|||||+||+|+|.+.+..++....|+|+||||||||
T Consensus       160 e~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~~~~~~s~l~~vDLAGsE  239 (354)
T d1goja_         160 EEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSE  239 (354)
T ss_dssp             EETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCS
T ss_pred             eecCCCEeecCceeecchhHHHHHHHHhhcccccccccccccccccccceEEEEEEEEeecCCCCeEEEEEEEeeccCcc
Confidence                  79999999999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             ccccCCCcccchHHhhhhccCCccccCc--ccccCC-cccccccchhhhhhhh--------hhhccccCCcccHHHHHhH
Q psy5718         192 KVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF-TVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKA  260 (720)
Q Consensus       192 r~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~-~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsT  260 (720)
                      +..++++.|.+++|+.+||+||++|++|  +|+++. .|||||+||||+||+|        +||+||||+..+++||++|
T Consensus       240 ~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~aL~~~~~~~iPyR~SkLT~lLkd~Lgg~s~t~~I~~isp~~~~~~eTl~T  319 (354)
T d1goja_         240 KVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLST  319 (354)
T ss_dssp             CCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHH
T ss_pred             cccccCCccchhhhhhhhhHHHHHHHHHHHHHhcCCCCcCCcccCHHHHHHHHhcCCCCeEEEEEEECCCcccHHHHHHH
Confidence            9999999999999999999999999999  999876 8999999999999999        8999999999999999999


Q ss_pred             HHHHHHhccccccchhhhH
Q psy5718         261 IEYEKELGETRLLLQTNER  279 (720)
Q Consensus       261 L~fa~rak~Ikn~~~vN~~  279 (720)
                      |+||++|++|+|.|.+|..
T Consensus       320 L~fa~~~~~i~~~~~~n~~  338 (354)
T d1goja_         320 LRFGMRAKSIKNKAKVNAE  338 (354)
T ss_dssp             HHHHHHHHTCBCCCCCCSS
T ss_pred             HHHHHHHhccCccceEcCC
Confidence            9999999999999999973

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-55  Score=470.45  Aligned_cols=255  Identities=50%  Similarity=0.687  Sum_probs=239.9

Q ss_pred             CCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeCCeeeecceecCCCCChHHHHHHhhhhcceeeecC-----
Q psy5718          13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD-----   87 (720)
Q Consensus        13 ~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G-----   87 (720)
                      .++||+|+|||||+++.|...++..++.++++.   ++....+.|.||+||+++++|++||+.++.|+|+++|+|     
T Consensus         3 ~~~NI~V~vRvRP~~~~e~~~~~~~~~~~~~~~---~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~~lv~~~l~G~n~~i   79 (323)
T d1bg2a_           3 AECNIKVMCRFRPLNESEVNRGDKYIAKFQGED---TVVIASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTI   79 (323)
T ss_dssp             SSCEEEEEEEECCCCHHHHHHTCCBCCEEETTT---EEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEEEEeCCCChHHhccCCceEEEECCCC---eEEECCceeECCEEECCCCCHHHHHHHHHHHHHHHHHcCCCcce
Confidence            578999999999999999888888888888876   788889999999999999999999999999999999999     


Q ss_pred             -------------------CCCceeehhhhhhhhhhhhhhcccccceeE-------------------------------
Q psy5718          88 -------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL-------------------------------  117 (720)
Q Consensus        88 -------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v-------------------------------  117 (720)
                                         ++...|||||++.++|..+........|.+                               
T Consensus        80 ~aYGqtgSGKTyT~~G~~~~~~~~gii~r~l~~l~~~~~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~~~~~~~  159 (323)
T d1bg2a_          80 FAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNR  159 (323)
T ss_dssp             EEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECTTS
T ss_pred             eeecccCCCCceeccCCcccccccchhhhHHHHHHhhhhccccccceEEEEEEEEEEcCcccccccccccceeEeecccc
Confidence                               445679999999999999987665544433                               


Q ss_pred             -EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeeccCCcccccC
Q psy5718         118 -IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKT  196 (720)
Q Consensus       118 -~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLAGSEr~~kt  196 (720)
                       ++++|++++.|.|+++++.++..|.++|++++|.+|..|||||+||+|++.+.+..++....|+|+||||||||+..++
T Consensus       160 ~~~v~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~ssRsh~i~~i~v~~~~~~~~~~~~s~l~~vDLAGse~~~~~  239 (323)
T d1bg2a_         160 VPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKT  239 (323)
T ss_dssp             CEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCSCCCCCC
T ss_pred             ceeecCCEEEEEeccHhHhHHhhhcccceeecccCCCCCCCccceEEEEEEEEEeCCCCcEEEEEEEEEecccccccccc
Confidence             8899999999999999999999999999999999999999999999999999999888889999999999999999999


Q ss_pred             CCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHHhHHHHHHH
Q psy5718         197 GAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHKKAIEYEKE  266 (720)
Q Consensus       197 ~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETlsTL~fa~r  266 (720)
                      +..+.++.|+.+||+||++|++|  +|+++..|||||+||||++|+|        +||+||||+..+++||++||+||+|
T Consensus       240 ~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~iPyR~SkLT~lL~d~L~g~~~t~~I~~isp~~~~~~eTl~tL~fa~r  319 (323)
T d1bg2a_         240 GAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQR  319 (323)
T ss_dssp             SSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHT
T ss_pred             cchhhhhhhhhcccccHHHHHHHHHHHhcCCCccCCccCHHHHHHHHhcCCCccEEEEEEECCcchhHHHHHHHHHHHHH
Confidence            99999999999999999999999  9999999999999999999999        8999999999999999999999999


Q ss_pred             hccc
Q psy5718         267 LGET  270 (720)
Q Consensus       267 ak~I  270 (720)
                      ||+|
T Consensus       320 ~k~I  323 (323)
T d1bg2a_         320 AKTI  323 (323)
T ss_dssp             SCCC
T ss_pred             hcCC
Confidence            9987

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=100.00  E-value=1.1e-54  Score=471.31  Aligned_cols=253  Identities=26%  Similarity=0.292  Sum_probs=200.6

Q ss_pred             CCCCCCCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------------CCeeeecceecCCCCChHHHHHHh
Q psy5718          10 EIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------------GGKFYLFDKVFKPNATQEKVYDEA   76 (720)
Q Consensus        10 ~~~~~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------------~~k~F~FD~VF~~~asQeeVY~~~   76 (720)
                      .+..+++|+|+|||||+++.|...++..++.++++.   .+.+             ..+.|.||+||+++++|++||+.+
T Consensus        25 ~~~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~Q~~Vy~~~  101 (362)
T d1v8ka_          25 DPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKC---LLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFT  101 (362)
T ss_dssp             CTTSCCCEEEEEEECCCCHHHHHTTCCBCEECCSSS---EEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHT
T ss_pred             CCCCCCCEEEEEEeCCCChHHhhCCCceEEEECCCc---EEEEeCCccccccccCcCceeEeCCeecCCCCCHHHHHHHH
Confidence            344567899999999999999888888888887655   2222             136899999999999999999999


Q ss_pred             hhhcceeeecC--------------------C-------CCceeehhhhhhhhhhhhhhccc-ccceeE-----------
Q psy5718          77 AKSIVSVQFVD--------------------A-------DQYMVSVDRLRSDHQLKASTMCE-HSLMHL-----------  117 (720)
Q Consensus        77 ~~plV~~vl~G--------------------~-------~~~~GIIpRav~~LF~~i~~~~~-~~~~~v-----------  117 (720)
                      +.|+|+++|+|                    +       ...+||+||++.+||..+..... ...|.+           
T Consensus       102 ~~plv~~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~~~v~vS~~EIyne~  181 (362)
T d1v8ka_         102 ARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGK  181 (362)
T ss_dssp             THHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTE
T ss_pred             HHHHHHHHHhccCceEEeeccCCCCCceeeeecCCCCcccccCCeeeehhhhHHHHhhcccccccchhheeeeeeecCCe
Confidence            99999999999                    1       24689999999999998865321 112222           


Q ss_pred             --------------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCccc
Q psy5718         118 --------------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK  177 (720)
Q Consensus       118 --------------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~  177 (720)
                                          +++.|++++.|.|+++++.++..|..+|.+++|.+|..|||||+||+|+|.+..     .
T Consensus       182 i~DLL~~~~~~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~i~~i~i~~~~-----~  256 (362)
T d1v8ka_         182 VFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKG-----R  256 (362)
T ss_dssp             EEETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESSS-----S
T ss_pred             EEecccCCccccccccccCCcccCCCEEEEecCHHHHHHHHhccccccccccccCcccCcceeeEEEEEEEecc-----e
Confidence                                899999999999999999999999999999999999999999999999997643     4


Q ss_pred             ccceeeeeeccCCcccccCCCc-ccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh---------hhhc
Q psy5718         178 LSGKLYLVDLAGSEKVSKTGAE-GTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN---------LVAR  245 (720)
Q Consensus       178 ~~skL~lVDLAGSEr~~kt~~~-g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd---------~mI~  245 (720)
                      ..|+|+|||||||||..+++.. +.++.|+.+||+||++||+|  +|+++..||||||||||+||||         +||+
T Consensus       257 ~~~~l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~~L~~vi~aL~~~~~hiPyR~SkLT~lLkdsllGgns~t~~i~  336 (362)
T d1v8ka_         257 LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIA  336 (362)
T ss_dssp             EEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEEEE
T ss_pred             eeeeEeeeecccccccccccccchhhhhhhhhhcccHHHHHHHHHHHhcCCCcCCCccCHHHHhhhhccCCCCccEEEEE
Confidence            5689999999999999887554 46788999999999999999  9999999999999999999999         8999


Q ss_pred             cccCCcccHHHHHhHHHHHHHhccc
Q psy5718         246 CTSMESSQAEEHKKAIEYEKELGET  270 (720)
Q Consensus       246 ~iSPs~~~~~ETlsTL~fa~rak~I  270 (720)
                      ||||+..+++||++||+||+|||+|
T Consensus       337 ~vsp~~~~~~eTl~TL~fa~rak~I  361 (362)
T d1v8ka_         337 MISPGISSCEYTLNTLRYADRVKEL  361 (362)
T ss_dssp             EECCBGGGHHHHHHHHHHHHHHHTT
T ss_pred             EeCCChhhHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999988

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=100.00  E-value=6.8e-55  Score=469.85  Aligned_cols=258  Identities=31%  Similarity=0.358  Sum_probs=215.7

Q ss_pred             CEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC-------CeeeecceecCCCCChHHHHHHhhhhcceeeecC-
Q psy5718          16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG-------GKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVD-   87 (720)
Q Consensus        16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~-------~k~F~FD~VF~~~asQeeVY~~~~~plV~~vl~G-   87 (720)
                      ||+|+|||||+++.|...+...++.+++.....++...       .+.|.||+||+++++|++||+.++.|+|+++|+| 
T Consensus         1 NI~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~lv~~~l~G~   80 (345)
T d1x88a1           1 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGY   80 (345)
T ss_dssp             CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEEECCCChhhhccCCCeEEEEcCCCceEEEecCCCCCCCCcceEecCEEeCCCCCHHHHHHHHHHHhHHHHhccC
Confidence            69999999999999988888888888877644333321       3689999999999999999999999999999998 


Q ss_pred             --------------------C-----------CCceeehhhhhhhhhhhhhhcccccceeE-------------------
Q psy5718          88 --------------------A-----------DQYMVSVDRLRSDHQLKASTMCEHSLMHL-------------------  117 (720)
Q Consensus        88 --------------------~-----------~~~~GIIpRav~~LF~~i~~~~~~~~~~v-------------------  117 (720)
                                          +           ...+|||||++.+||..+......+.+.+                   
T Consensus        81 n~~i~aYGqtgSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~  160 (345)
T d1x88a1          81 NCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSD  160 (345)
T ss_dssp             EEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEEETTCTTSC
T ss_pred             CceEEeeeeccccceEEeeecCCcccccccccCccCCcHHHHHHHHHHhhhccCceEEEEEEEEEEECCeeEECCCCCCc
Confidence                                1           12369999999999998876544333322                   


Q ss_pred             ----------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC---cccc
Q psy5718         118 ----------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN---EKKL  178 (720)
Q Consensus       118 ----------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~---~~~~  178 (720)
                                      ++|+|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.....   ....
T Consensus       161 ~~~~~~~~~~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SsRsH~i~~i~i~~~~~~~~~~~~~~  240 (345)
T d1x88a1         161 VSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVK  240 (345)
T ss_dssp             TTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCEEEE
T ss_pred             ccccceeeecccCCCCEEEcCCEEEEeCCHHHHHHHHHhhhccccccccCccccccccceEEEEEEEEeeccCCCCCceE
Confidence                            789999999999999999999999999999999999999999999999998865543   3456


Q ss_pred             cceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhcccc
Q psy5718         179 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTS  248 (720)
Q Consensus       179 ~skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iS  248 (720)
                      .|+|+|||||||||..+++..|.++.|+.+||+||++|++|  +|+.+..|||||+||||+||+|        +||+|||
T Consensus       241 ~s~l~~vDLAGsEr~~~~~~~~~~~~e~~~in~Sl~~L~~vi~al~~~~~~iPyR~SkLT~lL~d~Lgg~s~t~~i~~vs  320 (345)
T d1x88a1         241 IGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATIS  320 (345)
T ss_dssp             EEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSEEEEEEEEC
T ss_pred             eeeEEEEecCCccccccccchhhhhcccccccchHHHHHHHHHHHhcCCCcCCCccCHHHHHhHHhcCCCCcEEEEEEeC
Confidence            79999999999999999999999999999999999999999  9999999999999999999999        8999999


Q ss_pred             CCcccHHHHHhHHHHHHHhcccccc
Q psy5718         249 MESSQAEEHKKAIEYEKELGETRLL  273 (720)
Q Consensus       249 Ps~~~~~ETlsTL~fa~rak~Ikn~  273 (720)
                      |+..+++||++||+||+||++|+|+
T Consensus       321 p~~~~~~eTl~tL~fa~~~~~I~nk  345 (345)
T d1x88a1         321 PASLNLEETLSTLEYAHRAKNILNK  345 (345)
T ss_dssp             CCGGGHHHHHHHHHHHHHHTTCCCC
T ss_pred             CchhhHHHHHHHHHHHHHhhhccCC
Confidence            9999999999999999999999985

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=100.00  E-value=1.4e-52  Score=451.19  Aligned_cols=256  Identities=26%  Similarity=0.299  Sum_probs=209.5

Q ss_pred             CCEEEEEeeCCCCchhhccCCceEEEecCCCccceeee----------CCeeeecceecCCCCChHHHHHHhhhhcceee
Q psy5718          15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL----------GGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQ   84 (720)
Q Consensus        15 ~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~----------~~k~F~FD~VF~~~asQeeVY~~~~~plV~~v   84 (720)
                      |+|||+|||||+.+.+.. .+..++.++..+....+..          ..+.|.||+||+++++|++||+.+ .|+|+++
T Consensus         1 G~IrV~vRvRP~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~v-~~~v~~~   78 (342)
T d1f9va_           1 GNIRVYCRIRPALKNLEN-SDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSS   78 (342)
T ss_dssp             CEEEEEEEECCCCTTTCC-CTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHHHGGG
T ss_pred             CcEEEEEEeCcCCccccc-CCCceEEeeccCCcceeeeccccccCCCCCceEeecCeEeCCCCCHHHHHHHh-hhhhcch
Confidence            689999999999877644 4455555554332211111          137899999999999999999986 5999999


Q ss_pred             ecC-------------------CCCceeehhhhhhhhhhhhhhccc-ccceeE---------------------------
Q psy5718          85 FVD-------------------ADQYMVSVDRLRSDHQLKASTMCE-HSLMHL---------------------------  117 (720)
Q Consensus        85 l~G-------------------~~~~~GIIpRav~~LF~~i~~~~~-~~~~~v---------------------------  117 (720)
                      |+|                   .+..+|||||++.+||..+..... ...+.+                           
T Consensus        79 l~G~n~~i~aYGqtgSGKT~T~~G~~~Giipr~~~~lf~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~~~~  158 (342)
T d1f9va_          79 LDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTS  158 (342)
T ss_dssp             GGTCCEEEEEECCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC----------
T ss_pred             hcccccceeeeeccCCccccccccCcCchhHHHHHHHHhhhhhhhccccccceeeeeeeeccCeeEECCCCCCCcccccc
Confidence            999                   345789999999999998865322 122211                           


Q ss_pred             ---------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCccccccee
Q psy5718         118 ---------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKL  182 (720)
Q Consensus       118 ---------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL  182 (720)
                                     ++|.|++++.|.|+++++.++..|.++|.+++|.+|..|||||+||+|+|.+.+..++....|+|
T Consensus       159 ~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~N~~ssrSh~i~~i~v~~~~~~~~~~~~s~l  238 (342)
T d1f9va_         159 IGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTL  238 (342)
T ss_dssp             ---CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEEEEEE
T ss_pred             ccceeeeeecCCCCcEEEeeeEEEEecchHHHHHHHhhhhhccccccccccccCcccceeEEEEEEEecCCccceeeeee
Confidence                           68999999999999999999999999999999999999999999999999999888888889999


Q ss_pred             eeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccCC---cccccccchhhhhhhh--------hhhccccC
Q psy5718         183 YLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEF---TVARLYISKMKSEVKN--------LVARCTSM  249 (720)
Q Consensus       183 ~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~---~hIPYRdSKLTrLLqd--------~mI~~iSP  249 (720)
                      +||||||||+..+++..+.+++|+.+||+||++|++|  +|+++.   .|||||+||||+||+|        +||+||||
T Consensus       239 ~~vDLAGse~~~~~~~~~~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~~~~iPyR~SkLT~lL~d~lgg~s~t~~I~~vsp  318 (342)
T d1f9va_         239 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISP  318 (342)
T ss_dssp             EEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECC
T ss_pred             eeeeccCCcccccccchhhhhhhhhhccHHHHHHHHHHHHHhcccCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEECC
Confidence            9999999999999999999999999999999999999  988754   7999999999999999        89999999


Q ss_pred             CcccHHHHHhHHHHHHHhccccc
Q psy5718         250 ESSQAEEHKKAIEYEKELGETRL  272 (720)
Q Consensus       250 s~~~~~ETlsTL~fa~rak~Ikn  272 (720)
                      +..+++||++||+||+||+.|+.
T Consensus       319 ~~~~~~eTl~TL~fa~r~~~i~~  341 (342)
T d1f9va_         319 SSSHINETLNSLRFASKVNSTRL  341 (342)
T ss_dssp             SGGGHHHHHHHHHHHHHHCCTTT
T ss_pred             chhhHHHHHHHHHHHHHhhccee
Confidence            99999999999999999999975

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.5e-52  Score=447.26  Aligned_cols=247  Identities=23%  Similarity=0.270  Sum_probs=219.4

Q ss_pred             EEEEEeeCCCCchhhccCCceEEEecCCCccceeee-------------CCeeeecceecCCCCChHHHHHHhhhhccee
Q psy5718          17 IRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL-------------GGKFYLFDKVFKPNATQEKVYDEAAKSIVSV   83 (720)
Q Consensus        17 IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~-------------~~k~F~FD~VF~~~asQeeVY~~~~~plV~~   83 (720)
                      |+|+|||||+++.|...+...++.++++.   ++.+             ..+.|.||+||+++++|++||+.++.|+|.+
T Consensus         2 IkV~vRvRP~~~~E~~~~~~~~v~~~~~~---~~~v~~~~~~~~~~~~~~~~~F~fD~Vf~~~~~q~~vy~~~~~plv~~   78 (330)
T d1ry6a_           2 IKVVVRKRPLSELEKKKKDSDIITVKNNC---TLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIID   78 (330)
T ss_dssp             EEEEEEECCCCHHHHHTTCCBCEEEEETT---EEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHH
T ss_pred             EEEEEEeCCCChHHHhcCCceEEEECCCc---EEEEcCCccccccccCcCcceEeCCeecCCCCCHHHHHHHHHHHHHHH
Confidence            89999999999999888888888777665   3322             1368999999999999999999999999988


Q ss_pred             eec-C--------------------------CCCceeehhhhhhhhhhhhhhcccccceeE-------------------
Q psy5718          84 QFV-D--------------------------ADQYMVSVDRLRSDHQLKASTMCEHSLMHL-------------------  117 (720)
Q Consensus        84 vl~-G--------------------------~~~~~GIIpRav~~LF~~i~~~~~~~~~~v-------------------  117 (720)
                      +|. |                          ....+|||||++.+||..+........+.+                   
T Consensus        79 ~~~~G~n~~i~aYGqTGSGKTyTm~G~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~~v~~S~~EIyne~i~DLL~~~  158 (330)
T d1ry6a_          79 LYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKR  158 (330)
T ss_dssp             HHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC-
T ss_pred             HHhcCCCeEEEeeeccccccceeeecccccccccCCCchhHHHhhhhhhhhhhcccceEEEEEEEEeeeccccccccccc
Confidence            774 7                          125789999999999999876655444433                   


Q ss_pred             ------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeee
Q psy5718         118 ------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLV  185 (720)
Q Consensus       118 ------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lV  185 (720)
                                  ++++|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|++.+.+.   ....|+|+||
T Consensus       159 ~~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsh~i~~i~v~~~~~---~~~~s~l~~v  235 (330)
T d1ry6a_         159 KMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINK---NTSLGKIAFI  235 (330)
T ss_dssp             ----------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTT---TEEEEEEEEE
T ss_pred             ccceeeecCCCCccccCceEEEEeeccchhhhhhcccccccccccccccccCCcceEEEEEEEeccc---ccccceeeee
Confidence                        6899999999999999999999999999999999999999999999999987543   3456999999


Q ss_pred             eccCCcccccCCCcccch-HHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccH
Q psy5718         186 DLAGSEKVSKTGAEGTVL-DEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQA  254 (720)
Q Consensus       186 DLAGSEr~~kt~~~g~rl-~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~  254 (720)
                      |||||||..++++.|... .|+++||+||++|++|  +|+++..|||||+||||+||+|        +||+||||+..++
T Consensus       236 DLAGsEr~~~~~~~~~~~~~e~~~IN~sL~~L~~vi~al~~~~~~iPyR~SkLT~lL~d~lggns~t~~I~~vsp~~~~~  315 (330)
T d1ry6a_         236 DLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCC  315 (330)
T ss_dssp             ECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGH
T ss_pred             cccccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEECCchhhH
Confidence            999999999988887664 6999999999999999  9999999999999999999999        8999999999999


Q ss_pred             HHHHhHHHHHHHhcc
Q psy5718         255 EEHKKAIEYEKELGE  269 (720)
Q Consensus       255 ~ETlsTL~fa~rak~  269 (720)
                      +||++||+||+|||+
T Consensus       316 ~eTl~tL~fa~rak~  330 (330)
T d1ry6a_         316 EQTLNTLRYSSRVKN  330 (330)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999985

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=1.9e-51  Score=446.58  Aligned_cols=250  Identities=25%  Similarity=0.277  Sum_probs=210.1

Q ss_pred             CCCEEEEEeeCCCCchhhccCCceEEEecCCCccceee---------eCCeeeecceecCCCCChHHHHHHhhhhcceee
Q psy5718          14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLS---------LGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQ   84 (720)
Q Consensus        14 ~~~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~---------~~~k~F~FD~VF~~~asQeeVY~~~~~plV~~v   84 (720)
                      +|+|+|+|||||+++.|...+...++..++..  ..+.         ...+.|.||+||+++++|++||+.+ .|+|+++
T Consensus        44 ~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~v-~plv~~v  120 (368)
T d2ncda_          44 RGNIRVFCRIRPPLESEENRMCCTWTYHDEST--VELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMV-SPLIQSA  120 (368)
T ss_dssp             HCSEEEEEEECCCCGGGTTSCBCEEEEETTTE--EEEECSCHHHHTTTCCCEEECSEEECTTCCHHHHHTTT-HHHHHHH
T ss_pred             cCCEEEEEEeCCCCchhcCCCCcEEEeCCCCe--EEEccCCccccCCcCceeeECCeEECCCCCccchHHHH-HHHHHHH
Confidence            58999999999999998766655554444332  1111         1247899999999999999999765 6999999


Q ss_pred             ecC---------------------CCCceeehhhhhhhhhhhhhhccc-ccceeE-------------------------
Q psy5718          85 FVD---------------------ADQYMVSVDRLRSDHQLKASTMCE-HSLMHL-------------------------  117 (720)
Q Consensus        85 l~G---------------------~~~~~GIIpRav~~LF~~i~~~~~-~~~~~v-------------------------  117 (720)
                      |+|                     ++..+|||||++.+||..+..... ...+.+                         
T Consensus       121 l~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL~~~~~~~~~  200 (368)
T d2ncda_         121 LDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEI  200 (368)
T ss_dssp             HTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEESSSCEEETTCSSCCCCCE
T ss_pred             hcccceeEEeeccCCCccceEecccccccchhhHHHHHHhhhhhhhccccccceEEEEEEEEecceeecccccccccccc
Confidence            998                     567899999999999998875422 122222                         


Q ss_pred             ---------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCCcccccceeeeeecc
Q psy5718         118 ---------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLA  188 (720)
Q Consensus       118 ---------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~~~~~~skL~lVDLA  188 (720)
                               ++++|++++.|.+++++..++..|.++|.++.|.+|..|||||+||+|+|.+.+...+....|+|+|||||
T Consensus       201 ~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~~t~~n~~ssrSh~i~~i~v~~~~~~~~~~~~s~l~~VDLA  280 (368)
T d2ncda_         201 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLA  280 (368)
T ss_dssp             EECTTCTTCEEETTCCCEEECSHHHHHHHHHHHHHHSCCCSSSCTTTTTTCEEEEEEEEEEECTTSCCEEEEEEEEEECC
T ss_pred             eeeccccccccccccceeccCCHHHHHHHHHHHHhhcccccccccccccccceEEEEEEEEEecCCCceEeeeeeeeeec
Confidence                     89999999999999999999999999999999999999999999999999999888888899999999999


Q ss_pred             CCcccccCCCcccchHHhhhhccCCccccCc--ccccCCcccccccchhhhhhhh--------hhhccccCCcccHHHHH
Q psy5718         189 GSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEEFTVARLYISKMKSEVKN--------LVARCTSMESSQAEEHK  258 (720)
Q Consensus       189 GSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~~~hIPYRdSKLTrLLqd--------~mI~~iSPs~~~~~ETl  258 (720)
                      |||+..    .+.++.|+++||+||++||+|  +|+++..|||||+||||+||+|        +||+||||+..+++||+
T Consensus       281 Gse~~~----~~~~~~E~~~IN~SL~aL~~vi~aL~~~~~~iPyR~SkLT~lL~dsLggns~t~mI~~isp~~~~~~eTl  356 (368)
T d2ncda_         281 GSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESV  356 (368)
T ss_dssp             CCCCC--------------CTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGSSSSCEEEEEEEECCBGGGHHHHH
T ss_pred             cccccc----hhhhhcccccchhhHHHHHHHHHHHhcCCCCCCCcCCHHHHHHHHhcCCCCeEEEEEEECCChhhHHHHH
Confidence            999854    466899999999999999999  9999999999999999999999        89999999999999999


Q ss_pred             hHHHHHHHhccc
Q psy5718         259 KAIEYEKELGET  270 (720)
Q Consensus       259 sTL~fa~rak~I  270 (720)
                      +||+||+|||..
T Consensus       357 ~TL~fa~rak~~  368 (368)
T d2ncda_         357 KSLRFAASVNSC  368 (368)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999863

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=100.00  E-value=4.3e-52  Score=448.65  Aligned_cols=250  Identities=27%  Similarity=0.348  Sum_probs=212.1

Q ss_pred             CEEEEEeeCCCCchhhccCCceEEEecCCCccceeeeC-------CeeeecceecCCC--------CChHHHHHHhhhhc
Q psy5718          16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG-------GKFYLFDKVFKPN--------ATQEKVYDEAAKSI   80 (720)
Q Consensus        16 ~IrV~vRVRPl~~~E~~~g~~~iv~~~~~~~~~~v~~~-------~k~F~FD~VF~~~--------asQeeVY~~~~~pl   80 (720)
                      +|||+|||||+++.|...+...++.++++.   ++.+.       .+.|.||+|||++        ++|++||+.++.|+
T Consensus         2 sIrV~vRvRP~~~~E~~~~~~~~~~~~~~~---~~~~~~~~~~~~~k~f~FD~vf~~~~~~~~~~~~sQ~~vy~~~~~pl   78 (349)
T d2zfia1           2 SVKVAVRVRPFNSREMSRDSKCIIQMSGST---TTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEM   78 (349)
T ss_dssp             CEEEEEEECCCCHHHHHTTCCBCEEEETTE---EEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHH
T ss_pred             cEEEEEEeCCCChhHhcCCCcEEEEECCCc---EEEECCCCCCcCCeeEEeceEeCCCCCccccccccHHHHHHHhhHHH
Confidence            699999999999999888888888887765   33332       4789999999987        58999999999999


Q ss_pred             ceeeecC---------------------C--CCceeehhhhhhhhhhhhhhccc-ccceeE-------------------
Q psy5718          81 VSVQFVD---------------------A--DQYMVSVDRLRSDHQLKASTMCE-HSLMHL-------------------  117 (720)
Q Consensus        81 V~~vl~G---------------------~--~~~~GIIpRav~~LF~~i~~~~~-~~~~~v-------------------  117 (720)
                      |+++|+|                     +  ...+|||||++.+||..+..... ...+.+                   
T Consensus        79 v~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~Glipr~l~~lf~~~~~~~~~~~~~~v~~S~~Eiyne~i~DLL~~~  158 (349)
T d2zfia1          79 LQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK  158 (349)
T ss_dssp             HHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTT
T ss_pred             HHHHHhccCceeeeeccCCCCCceeeccCccccccCchHHHHhhhhhhccccccCCcceEEEEEeeeeeCCEEEeccccc
Confidence            9999998                     1  24799999999999999875322 222221                   


Q ss_pred             --------------EEecCcEEEEecChhhhHHHHHhhhccccceeccCCCCCCCceeEEEEEEEeeecCC----ccccc
Q psy5718         118 --------------IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLEN----EKKLS  179 (720)
Q Consensus       118 --------------~~V~gltev~V~S~eev~~lL~~G~~~R~~~sT~~N~~SSRSH~IftI~v~q~~~~~----~~~~~  179 (720)
                                    ++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|.+.+.....    .....
T Consensus       159 ~~~~~~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~  238 (349)
T d2zfia1         159 NKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKV  238 (349)
T ss_dssp             TCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEE
T ss_pred             ccCCceEEecCCCCcEEEEeEEEeccCHHHHHHHHHhcccCeEeccCCCccccccccceEEEEEEEEecccCCCccccee
Confidence                          799999999999999999999999999999999999999999999999998865542    23456


Q ss_pred             ceeeeeeccCCcccccCCCcccchHHhhhhccCCccccCc--ccccC------------Ccccccccchhhhhhhh----
Q psy5718         180 GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADGAG--KLEEE------------FTVARLYISKMKSEVKN----  241 (720)
Q Consensus       180 skL~lVDLAGSEr~~kt~~~g~rl~E~~~INkSL~aLg~V--aL~~~------------~~hIPYRdSKLTrLLqd----  241 (720)
                      |+|+|||||||||.+++++.|.+++|+++||+||++|++|  +|+++            ..|||||+||||+||+|    
T Consensus       239 s~l~~VDLAGsEr~~~~~~~g~~~~e~~~IN~SL~~L~~vi~aL~~~~~~~~~~~~~~~~~~IPyR~SkLT~lL~d~Lgg  318 (349)
T d2zfia1         239 SKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG  318 (349)
T ss_dssp             EEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSST
T ss_pred             eEEEEeecccchhhhhcCCcccchhhccchhhHHHHHHHHHHHHHhhhcccccccccCCCCccCCcCCHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999  88642            26999999999999999    


Q ss_pred             ----hhhccccCCcccHHHHHhHHHHHHHhc
Q psy5718         242 ----LVARCTSMESSQAEEHKKAIEYEKELG  268 (720)
Q Consensus       242 ----~mI~~iSPs~~~~~ETlsTL~fa~rak  268 (720)
                          +||+||||+..+++||++||+||+|||
T Consensus       319 ~s~t~~I~~vsp~~~~~~eTl~TL~fa~rak  349 (349)
T d2zfia1         319 NSRTAMVAALSPADINYDETLSTLRYADRAK  349 (349)
T ss_dssp             TCEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred             CccEEEEEEeCCChhhHHHHHHHHHHHHhcC
Confidence                899999999999999999999999997

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.36  E-value=12  Score=30.68  Aligned_cols=78  Identities=22%  Similarity=0.298  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh---------------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5718         421 DYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYD---------------QKSQEVETKNKEFETLTEELTLKQTTL  485 (720)
Q Consensus       421 ~~e~lq~el~~lq~e~~~~keevke~~qaleel~~n~d---------------~~~~e~e~~~~e~~~l~~el~~~~~~~  485 (720)
                      .|..+|.++..+.........++.|...+|++|..-.+               .......++.+.++.+..++..+....
T Consensus         9 ~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~   88 (107)
T d1fxka_           9 QFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQE   88 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777777777777777777777664322               234446667777777877777777777


Q ss_pred             HHHHHHHHHHHHH
Q psy5718         486 NTTSTELQQIKDM  498 (720)
Q Consensus       486 ~~l~~el~~l~~~  498 (720)
                      ..+..+++.++..
T Consensus        89 ~~l~~~l~~~~~~  101 (107)
T d1fxka_          89 ERVMKKLQEMQVN  101 (107)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777777654