Psyllid ID: psy5720

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MKFSGNESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPPVIRPGGVTSPRWGDEERKRKVIMGGGATRGK
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHccccccccccccccccccccccccccccccccccEEEcccccccc
Coil and Loop (DISEMBL)
mkfsgneseddggslaQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKnlarrgpapqiakpiragqpvvppvirpggvtsprwgdeerkrkvimgggatrgk
Flexible Loop (DISEMBL)
mkfsgneseddggslAQRQKISFLENNLDQLTKVHKqlvrdnadlrcelPKLEKRLRATMERVKALETAlkeakegamkdrkryqyEVDRIKEavrqknlarrgpapqiakpiragqpvvppvirpggvtsprwgdeerkrkvimgggatrgk
Low Complexity Region (SEG)
MKFSGNESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAgqpvvppvirpggvTSPRWGDEERKRKVIMGGGATRGK
Disordered region (IsUnstruct)
***********************L*NNLDQLTKVHKQLVRDNADLRCEL********************************************************************************************************
Disordered Region (DISOPRED)
**************************NLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETA*K***********RYQYEVDR***************************************************************
Disordered Region (DISEMBL)
**************LAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALK**********KRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPPVIRPGGVTSPRWGDEERKRKVIMGGGATRGK
Disordered Region (DISPRO)
*************SLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNL*****************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKFSGNESEDDGGSLAQRQKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPPVIRPGGVTSPRWGDEERKRKVIMGGGATRGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
P17210	975	Kinesin heavy chain OS=Dr	yes	N/A	0.784	0.123	0.868	9e-56
P21613	967	Kinesin heavy chain OS=Do	N/A	N/A	0.797	0.126	0.803	4e-52
P33176	963	Kinesin-1 heavy chain OS=	yes	N/A	0.797	0.126	0.779	9e-50
Q61768	963	Kinesin-1 heavy chain OS=	yes	N/A	0.797	0.126	0.771	3e-49
Q2PQA9	963	Kinesin-1 heavy chain OS=	yes	N/A	0.797	0.126	0.771	4e-49
P28738	956	Kinesin heavy chain isofo	no	N/A	0.810	0.129	0.755	2e-47
O60282	957	Kinesin heavy chain isofo	no	N/A	0.810	0.129	0.748	4e-47
Q5R9K7	1032	Kinesin heavy chain isofo	no	N/A	0.816	0.121	0.740	2e-45
Q12840	1032	Kinesin heavy chain isofo	no	N/A	0.816	0.121	0.740	2e-45
P33175	1027	Kinesin heavy chain isofo	no	N/A	0.816	0.121	0.740	3e-45

>sp|P17210|KINH_DROME Kinesin heavy chain OS=Drosophila melanogaster GN=Khc PE=1 SV=2

 Score =  215 bits (547), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 106/122 (86%), Positives = 112/122 (91%), Gaps = 2/122 (1%)

Query: 7   ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
           ESE+DGGSLAQ+QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLR TMERVKAL
Sbjct: 840 ESEEDGGSLAQKQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRCTMERVKAL 899

Query: 67  ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPPVIRP 126
           ETALKEAKEGAM+DRKRYQYEVDRIKEAVRQK+L RRGP  QIAKPIR+GQ  +   IR 
Sbjct: 900 ETALKEAKEGAMRDRKRYQYEVDRIKEAVRQKHLGRRGPQAQIAKPIRSGQGAIA--IRG 957

Query: 127 GG 128
           GG
Sbjct: 958 GG 959

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. Milt and Miro form an essential protein complex that links Khc to mitochondria for light chain-independent, anterograde transport of mitochondria.
Drosophila melanogaster (taxid: 7227)

>sp|P21613|KINH_DORPE Kinesin heavy chain OS=Doryteuthis pealeii PE=2 SV=1

 Score =  203 bits (516), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/127 (80%), Positives = 110/127 (86%), Gaps = 5/127 (3%)

Query: 7   ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
           E ED GG+ AQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRATMERVK+L
Sbjct: 819 EDEDTGGNAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKSL 878

Query: 67  ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQ-----PVVP 121
           E+ALK+AKEGAM+DRKRYQ+EVDRIKEAVRQKNLARRG A QIAKPIR GQ     P   
Sbjct: 879 ESALKDAKEGAMRDRKRYQHEVDRIKEAVRQKNLARRGHAAQIAKPIRPGQHQSVSPAQA 938

Query: 122 PVIRPGG 128
             IR GG
Sbjct: 939 AAIRGGG 945

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport.

Loligo pealeii (taxid: 1051067)

>sp|P33176|KINH_HUMAN Kinesin-1 heavy chain OS=Homo sapiens GN=KIF5B PE=1 SV=1

 Score =  195 bits (495), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 99/127 (77%), Positives = 107/127 (84%), Gaps = 5/127 (3%)

Query: 7   ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
           +S+D GGS AQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct: 818 DSDDTGGSAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 877

Query: 67  ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQ-----PVVP 121
           E+ALKEAKE A +DRKRYQ EVDRIKEAVR KN+ARRG + QIAKPIR GQ     P  P
Sbjct: 878 ESALKEAKENASRDRKRYQQEVDRIKEAVRSKNMARRGHSAQIAKPIRPGQHPAASPTHP 937

Query: 122 PVIRPGG 128
             IR GG
Sbjct: 938 SAIRGGG 944

Microtubule-dependent motor required for normal distribution of mitochondria and lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q61768|KINH_MOUSE Kinesin-1 heavy chain OS=Mus musculus GN=Kif5b PE=1 SV=3

 Score =  193 bits (491), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 107/127 (84%), Gaps = 5/127 (3%)

Query: 7   ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
           +S+D GGS AQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct: 818 DSDDTGGSAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 877

Query: 67  ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQ-----PVVP 121
           E+ALKEAKE A +DRKRYQ EVDRIKEAVR KN+ARRG + QIAKPIR GQ     P  P
Sbjct: 878 ESALKEAKENASRDRKRYQQEVDRIKEAVRSKNMARRGHSAQIAKPIRPGQHPAASPTHP 937

Query: 122 PVIRPGG 128
             +R GG
Sbjct: 938 GTVRGGG 944

Microtubule-dependent motor required for normal distribution of mitochondria and lysosomes. May be involved in the mechanisms of growth arrest induced by exposure to DNA-damaging drugs or by cellular senescence.

Mus musculus (taxid: 10090)

>sp|Q2PQA9|KINH_RAT Kinesin-1 heavy chain OS=Rattus norvegicus GN=Kif5b PE=1 SV=1

 Score =  193 bits (490), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 107/127 (84%), Gaps = 5/127 (3%)

Query: 7   ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
           +S+D GGS AQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct: 818 DSDDTGGSAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 877

Query: 67  ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQ-----PVVP 121
           E+ALKEAKE A +DRKRYQ EVDRIKEAVR KN+ARRG + QIAKPIR GQ     P  P
Sbjct: 878 ESALKEAKENASRDRKRYQQEVDRIKEAVRSKNMARRGHSAQIAKPIRPGQHPAASPTHP 937

Query: 122 PVIRPGG 128
             +R GG
Sbjct: 938 GAVRGGG 944

Microtubule-dependent motor required for normal distribution of mitochondria and lysosomes.

Rattus norvegicus (taxid: 10116)

>sp|P28738|KIF5C_MOUSE Kinesin heavy chain isoform 5C OS=Mus musculus GN=Kif5c PE=1 SV=3

 Score =  187 bits (476), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 105/127 (82%), Gaps = 3/127 (2%)

Query: 7   ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
           +S+D GGS AQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct: 819 DSDDGGGSAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 878

Query: 67  ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPPVIRP 126
           E+ALKEAKE AM+DRKRYQ EVDRIKEAVR KN+ARR  + QIAKPIR G     P   P
Sbjct: 879 ESALKEAKENAMRDRKRYQQEVDRIKEAVRAKNMARRAHSAQIAKPIRPGH---YPASSP 935

Query: 127 GGVTSPR 133
             V + R
Sbjct: 936 TAVHAVR 942

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport.

Mus musculus (taxid: 10090)

>sp|O60282|KIF5C_HUMAN Kinesin heavy chain isoform 5C OS=Homo sapiens GN=KIF5C PE=1 SV=1

 Score =  186 bits (473), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/127 (74%), Positives = 105/127 (82%), Gaps = 3/127 (2%)

Query: 7   ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
           +++D GGS AQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct: 820 DNDDGGGSAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 879

Query: 67  ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPPVIRP 126
           E+ALKEAKE AM+DRKRYQ EVDRIKEAVR KN+ARR  + QIAKPIR G     P   P
Sbjct: 880 ESALKEAKENAMRDRKRYQQEVDRIKEAVRAKNMARRAHSAQIAKPIRPGH---YPASSP 936

Query: 127 GGVTSPR 133
             V + R
Sbjct: 937 TAVHAIR 943

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport.

Homo sapiens (taxid: 9606)

>sp|Q5R9K7|KIF5A_PONAB Kinesin heavy chain isoform 5A OS=Pongo abelii GN=KIF5A PE=2 SV=1

 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 103/127 (81%), Gaps = 2/127 (1%)

Query: 7   ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
           E ED GG  +Q+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct: 816 EPEDSGGIHSQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 875

Query: 67  ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQ-PVVPPVIR 125
           E ALKEAKEGAMKD++RYQ EVDRIKEAVR K+  +RG + QIAKP+R G  P   P   
Sbjct: 876 EGALKEAKEGAMKDKRRYQQEVDRIKEAVRYKSSGKRGHSAQIAKPVRPGHYPASSPT-N 934

Query: 126 PGGVTSP 132
           P G  SP
Sbjct: 935 PYGTRSP 941

Microtubule-dependent motor required for slow axonal transport of neurofilament proteins (NFH, NFM and NFL).

Pongo abelii (taxid: 9601)

>sp|Q12840|KIF5A_HUMAN Kinesin heavy chain isoform 5A OS=Homo sapiens GN=KIF5A PE=1 SV=2

 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 103/127 (81%), Gaps = 2/127 (1%)

Query: 7   ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
           E ED GG  +Q+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct: 816 EPEDSGGIHSQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 875

Query: 67  ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQ-PVVPPVIR 125
           E ALKEAKEGAMKD++RYQ EVDRIKEAVR K+  +RG + QIAKP+R G  P   P   
Sbjct: 876 EGALKEAKEGAMKDKRRYQQEVDRIKEAVRYKSSGKRGHSAQIAKPVRPGHYPASSPT-N 934

Query: 126 PGGVTSP 132
           P G  SP
Sbjct: 935 PYGTRSP 941

Microtubule-dependent motor required for slow axonal transport of neurofilament proteins (NFH, NFM and NFL).

Homo sapiens (taxid: 9606)

>sp|P33175|KIF5A_MOUSE Kinesin heavy chain isoform 5A OS=Mus musculus GN=Kif5a PE=1 SV=3

 Score =  180 bits (457), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 103/127 (81%), Gaps = 2/127 (1%)

Query: 7   ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
           E ED GG  +Q+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct: 816 EPEDSGGIHSQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 875

Query: 67  ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQ-PVVPPVIR 125
           E ALKEAKEGAMKD++RYQ EVDRIKEAVR K+  +RG + QIAKP+R G  P   P   
Sbjct: 876 EGALKEAKEGAMKDKRRYQQEVDRIKEAVRYKSSGKRGHSAQIAKPVRPGHYPASSPT-N 934

Query: 126 PGGVTSP 132
           P G  SP
Sbjct: 935 PYGTRSP 941

Microtubule-dependent motor required for slow axonal transport of neurofilament proteins (NFH, NFM and NFL).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
345485732	990	PREDICTED: kinesin heavy chain [Nasonia	0.849	0.131	0.830	2e-56
270014227	982	kinesin heavy chain [Tribolium castaneum	0.934	0.145	0.755	5e-55
307186188	969	Kinesin heavy chain [Camponotus floridan	0.823	0.130	0.835	7e-55
170040953	321	kinesin heavy chain [Culex quinquefascia	0.947	0.451	0.743	1e-54
189241456	1101	PREDICTED: similar to Kinesin heavy chai	0.934	0.129	0.755	1e-54
332017463	969	Kinesin heavy chain [Acromyrmex echinati	0.823	0.130	0.835	2e-54
322799916	972	hypothetical protein SINV_14443 [Solenop	0.823	0.129	0.835	2e-54
307196040	1002	Kinesin heavy chain [Harpegnathos saltat	0.823	0.125	0.835	2e-54
195488269	975	GE14079 [Drosophila yakuba] gi|194178344	0.784	0.123	0.877	2e-54
194882575	975	GG22283 [Drosophila erecta] gi|190658573	0.784	0.123	0.877	2e-54

>gi|345485732|ref|XP_001606707.2| PREDICTED: kinesin heavy chain [Nasonia vitripennis]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/136 (83%), Positives = 122/136 (89%), Gaps = 6/136 (4%)

Query: 7   ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
           ++EDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL
Sbjct: 839 DNEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 898

Query: 67  ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPPVIRP 126
           ETAL++AKEGAM+DRKRYQYEVDRIKEAVRQKNLARRGP+ QIAKPIRAGQ  V      
Sbjct: 899 ETALRDAKEGAMRDRKRYQYEVDRIKEAVRQKNLARRGPSAQIAKPIRAGQHHV------ 952

Query: 127 GGVTSPRWGDEERKRK 142
           GGV + R G+ E +RK
Sbjct: 953 GGVNAIRTGNREIERK 968

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014227|gb|EFA10675.1| kinesin heavy chain [Tribolium castaneum]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 122/147 (82%), Gaps = 4/147 (2%)

Query: 3   FSGNESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER 62
            S  ++E+DGGSLAQ+QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER
Sbjct: 827 LSAEDNEEDGGSLAQKQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER 886

Query: 63  VKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVP- 121
           VKALETALKEAKEGAM+DRKRYQYEVDRIKEAVRQKNLARRGPA  IAKPIR+GQ  V  
Sbjct: 887 VKALETALKEAKEGAMRDRKRYQYEVDRIKEAVRQKNLARRGPAATIAKPIRSGQHHVVV 946

Query: 122 ---PVIRPGGVTSPRWGDEERKRKVIM 145
                IR G     +  +  RKR+ ++
Sbjct: 947 GGGAAIRTGSNMGQKNMEIARKRESLI 973

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186188|gb|EFN71894.1| Kinesin heavy chain [Camponotus floridanus]

 Score =  218 bits (555), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 107/128 (83%), Positives = 116/128 (90%), Gaps = 2/128 (1%)

Query: 3   FSGNESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER 62
            S  ++EDDGGSLAQ+QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER
Sbjct: 838 ISAEDNEDDGGSLAQKQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER 897

Query: 63  VKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPP 122
           +KALETAL++AKEGAM+DRKRYQYEVDRIKEAVRQKNLARRGP+ QIAKPIRAGQ  +  
Sbjct: 898 IKALETALRDAKEGAMRDRKRYQYEVDRIKEAVRQKNLARRGPSAQIAKPIRAGQHHLSN 957

Query: 123 V--IRPGG 128
           V  IR G 
Sbjct: 958 VNAIRTGN 965

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170040953|ref|XP_001848245.1| kinesin heavy chain [Culex quinquefasciatus] gi|167864545|gb|EDS27928.1| kinesin heavy chain [Culex quinquefasciatus]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/152 (74%), Positives = 123/152 (80%), Gaps = 7/152 (4%)

Query: 3   FSGNESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER 62
            +  E+EDDGGSLAQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLR TMER
Sbjct: 54  INSEETEDDGGSLAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRTTMER 113

Query: 63  VKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPP 122
           VKALETALKEAKEGAM+DRKRYQYEVDRIKEAVRQKNLARRGP  QIAKPIRAGQ  +  
Sbjct: 114 VKALETALKEAKEGAMRDRKRYQYEVDRIKEAVRQKNLARRGPQAQIAKPIRAGQGHI-- 171

Query: 123 VIRPGG-----VTSPRWGDEERKRKVIMGGGA 149
           + +  G     VT     DE+RK  V +   A
Sbjct: 172 LFKTAGAASSPVTPKAITDEKRKSLVKVSVSA 203

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241456|ref|XP_973415.2| PREDICTED: similar to Kinesin heavy chain CG7765-PA [Tribolium castaneum]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 122/147 (82%), Gaps = 4/147 (2%)

Query: 3   FSGNESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER 62
            S  ++E+DGGSLAQ+QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER
Sbjct: 827 LSAEDNEEDGGSLAQKQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER 886

Query: 63  VKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVP- 121
           VKALETALKEAKEGAM+DRKRYQYEVDRIKEAVRQKNLARRGPA  IAKPIR+GQ  V  
Sbjct: 887 VKALETALKEAKEGAMRDRKRYQYEVDRIKEAVRQKNLARRGPAATIAKPIRSGQHHVVV 946

Query: 122 ---PVIRPGGVTSPRWGDEERKRKVIM 145
                IR G     +  +  RKR+ ++
Sbjct: 947 GGGAAIRTGSNMGQKNMEIARKRESLI 973

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017463|gb|EGI58186.1| Kinesin heavy chain [Acromyrmex echinatior]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/128 (83%), Positives = 116/128 (90%), Gaps = 2/128 (1%)

Query: 3   FSGNESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER 62
            +  ++EDDGGSLAQ+QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER
Sbjct: 838 INAEDNEDDGGSLAQKQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER 897

Query: 63  VKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPP 122
           VKALETAL++AKEGAM+DRKRYQYEVDRIKEAVRQKNLARRGP+ QIAKPIRAGQ  +  
Sbjct: 898 VKALETALRDAKEGAMRDRKRYQYEVDRIKEAVRQKNLARRGPSAQIAKPIRAGQHHLSN 957

Query: 123 V--IRPGG 128
           V  IR G 
Sbjct: 958 VNAIRTGN 965

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799916|gb|EFZ21057.1| hypothetical protein SINV_14443 [Solenopsis invicta]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/128 (83%), Positives = 116/128 (90%), Gaps = 2/128 (1%)

Query: 3   FSGNESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER 62
            +  ++EDDGGSLAQ+QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER
Sbjct: 841 INAEDNEDDGGSLAQKQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER 900

Query: 63  VKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPP 122
           VKALETAL++AKEGAM+DRKRYQYEVDRIKEAVRQKNLARRGP+ QIAKPIRAGQ  +  
Sbjct: 901 VKALETALRDAKEGAMRDRKRYQYEVDRIKEAVRQKNLARRGPSAQIAKPIRAGQHHLSN 960

Query: 123 V--IRPGG 128
           V  IR G 
Sbjct: 961 VNAIRTGN 968

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196040|gb|EFN77765.1| Kinesin heavy chain [Harpegnathos saltator]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/128 (83%), Positives = 116/128 (90%), Gaps = 2/128 (1%)

Query: 3   FSGNESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER 62
            +  ++EDDGGSLAQ+QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER
Sbjct: 862 INAEDNEDDGGSLAQKQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMER 921

Query: 63  VKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPP 122
           VKALETAL++AKEGAM+DRKRYQYEVDRIKEAVRQKNLARRGP+ QIAKPIRAGQ  +  
Sbjct: 922 VKALETALRDAKEGAMRDRKRYQYEVDRIKEAVRQKNLARRGPSAQIAKPIRAGQHHLSN 981

Query: 123 V--IRPGG 128
           V  IR G 
Sbjct: 982 VNAIRTGN 989

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195488269|ref|XP_002092243.1| GE14079 [Drosophila yakuba] gi|194178344|gb|EDW91955.1| GE14079 [Drosophila yakuba]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/122 (87%), Positives = 113/122 (92%), Gaps = 2/122 (1%)

Query: 7   ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
           ESE+DGGSLAQ+QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLR+TMERVKAL
Sbjct: 840 ESEEDGGSLAQKQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRSTMERVKAL 899

Query: 67  ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPPVIRP 126
           ETALKEAKEGAM+DRKRYQYEVDRIKEAVRQK+L RRGP  QIAKPIRAGQ  +   IR 
Sbjct: 900 ETALKEAKEGAMRDRKRYQYEVDRIKEAVRQKHLGRRGPQAQIAKPIRAGQGAIA--IRG 957

Query: 127 GG 128
           GG
Sbjct: 958 GG 959

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194882575|ref|XP_001975386.1| GG22283 [Drosophila erecta] gi|190658573|gb|EDV55786.1| GG22283 [Drosophila erecta]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 107/122 (87%), Positives = 113/122 (92%), Gaps = 2/122 (1%)

Query: 7   ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
           ESE+DGGSLAQ+QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLR+TMERVKAL
Sbjct: 840 ESEEDGGSLAQKQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRSTMERVKAL 899

Query: 67  ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPPVIRP 126
           ETALKEAKEGAM+DRKRYQYEVDRIKEAVRQK+L RRGP  QIAKPIRAGQ  +   IR 
Sbjct: 900 ETALKEAKEGAMRDRKRYQYEVDRIKEAVRQKHLGRRGPQAQIAKPIRAGQGAIA--IRG 957

Query: 127 GG 128
           GG
Sbjct: 958 GG 959

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
FB|FBgn0001308	975	Khc "Kinesin heavy chain" [Dro	0.712	0.111	0.917	2e-47
UNIPROTKB|F1RWC5	960	KIF5B "Uncharacterized protein	0.705	0.112	0.842	4.6e-42
UNIPROTKB|F1N1G7	963	KIF5B "Uncharacterized protein	0.705	0.112	0.842	4.7e-42
UNIPROTKB|E2QTN0	963	KIF5B "Uncharacterized protein	0.705	0.112	0.842	4.7e-42
UNIPROTKB|P33176	963	KIF5B "Kinesin-1 heavy chain"	0.705	0.112	0.842	4.7e-42
MGI|MGI:1098268	963	Kif5b "kinesin family member 5	0.705	0.112	0.842	4.7e-42
RGD|621559	963	Kif5b "kinesin family member 5	0.705	0.112	0.842	4.7e-42
UNIPROTKB|E1C3A1	966	KIF5B "Uncharacterized protein	0.705	0.111	0.842	4.7e-42
UNIPROTKB|F1NE00	933	KIF5C "Uncharacterized protein	0.705	0.115	0.842	5.5e-42
UNIPROTKB|I3LUB8	946	KIF5C "Uncharacterized protein	0.705	0.114	0.842	5.7e-42

FB|FBgn0001308 Khc "Kinesin heavy chain" [Drosophila melanogaster (taxid:7227)]

 Score = 505 (182.8 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 100/109 (91%), Positives = 105/109 (96%)

Query:     7 ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
             ESE+DGGSLAQ+QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLR TMERVKAL
Sbjct:   840 ESEEDGGSLAQKQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRCTMERVKAL 899

Query:    67 ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRA 115
             ETALKEAKEGAM+DRKRYQYEVDRIKEAVRQK+L RRGP  QIAKPIR+
Sbjct:   900 ETALKEAKEGAMRDRKRYQYEVDRIKEAVRQKHLGRRGPQAQIAKPIRS 948

GO:0005737 "cytoplasm" evidence=IDA

GO:0003774 "motor activity" evidence=NAS

GO:0008017 "microtubule binding" evidence=ISS;IDA

GO:0005871 "kinesin complex" evidence=ISS;NAS;IDA

GO:0007018 "microtubule-based movement" evidence=ISS;IDA;NAS

GO:0003777 "microtubule motor activity" evidence=ISS;IDA;NAS

GO:0035371 "microtubule plus end" evidence=IDA

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0019227 "neuronal action potential propagation" evidence=NAS

GO:0007317 "regulation of pole plasm oskar mRNA localization" evidence=IMP;TAS

GO:0008574 "plus-end-directed microtubule motor activity" evidence=TAS

GO:0007315 "pole plasm assembly" evidence=IMP

GO:0007310 "oocyte dorsal/ventral axis specification" evidence=IMP

GO:0045451 "pole plasm oskar mRNA localization" evidence=NAS

GO:0007303 "cytoplasmic transport, nurse cell to oocyte" evidence=TAS

GO:0008088 "axon cargo transport" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0001754 "eye photoreceptor cell differentiation" evidence=IGI

GO:0016482 "cytoplasmic transport" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0047497 "mitochondrion transport along microtubule" evidence=IMP

GO:0008103 "oocyte microtubule cytoskeleton polarization" evidence=IMP

GO:0048311 "mitochondrion distribution" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007409 "axonogenesis" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0010970 "microtubule-based transport" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0030011 "maintenance of cell polarity" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0048741 "skeletal muscle fiber development" evidence=IMP

GO:0040023 "establishment of nucleus localization" evidence=IMP

GO:0048312 "intracellular distribution of mitochondria" evidence=IMP

UNIPROTKB|F1RWC5 KIF5B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 455 (165.2 bits), Expect = 4.6e-42, P = 4.6e-42
 Identities = 91/108 (84%), Positives = 99/108 (91%)

Query:     7 ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
             +S+D GGS AQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct:   815 DSDDTGGSAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 874

Query:    67 ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIR 114
             E+ALKEAKE A +DRKRYQ EVDRIKEAVR KN+ARRG + QIAKPIR
Sbjct:   875 ESALKEAKENASRDRKRYQQEVDRIKEAVRSKNMARRGHSAQIAKPIR 922

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=IEA

GO:0043268 "positive regulation of potassium ion transport" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0035617 "stress granule disassembly" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1N1G7 KIF5B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 455 (165.2 bits), Expect = 4.7e-42, P = 4.7e-42
 Identities = 91/108 (84%), Positives = 99/108 (91%)

Query:     7 ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
             +S+D GGS AQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct:   818 DSDDTGGSAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 877

Query:    67 ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIR 114
             E+ALKEAKE A +DRKRYQ EVDRIKEAVR KN+ARRG + QIAKPIR
Sbjct:   878 ESALKEAKENASRDRKRYQQEVDRIKEAVRSKNMARRGHSAQIAKPIR 925

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=IEA

GO:0043268 "positive regulation of potassium ion transport" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0035617 "stress granule disassembly" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|E2QTN0 KIF5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 455 (165.2 bits), Expect = 4.7e-42, P = 4.7e-42
 Identities = 91/108 (84%), Positives = 99/108 (91%)

Query:     7 ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
             +S+D GGS AQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct:   818 DSDDTGGSAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 877

Query:    67 ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIR 114
             E+ALKEAKE A +DRKRYQ EVDRIKEAVR KN+ARRG + QIAKPIR
Sbjct:   878 ESALKEAKENASRDRKRYQQEVDRIKEAVRSKNMARRGHSAQIAKPIR 925

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=IEA

GO:0043268 "positive regulation of potassium ion transport" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0035617 "stress granule disassembly" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|P33176 KIF5B "Kinesin-1 heavy chain" [Homo sapiens (taxid:9606)]

 Score = 455 (165.2 bits), Expect = 4.7e-42, P = 4.7e-42
 Identities = 91/108 (84%), Positives = 99/108 (91%)

Query:     7 ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
             +S+D GGS AQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct:   818 DSDDTGGSAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 877

Query:    67 ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIR 114
             E+ALKEAKE A +DRKRYQ EVDRIKEAVR KN+ARRG + QIAKPIR
Sbjct:   878 ESALKEAKENASRDRKRYQQEVDRIKEAVRSKNMARRGHSAQIAKPIR 925

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0031982 "vesicle" evidence=IDA

GO:0005871 "kinesin complex" evidence=TAS

GO:0007018 "microtubule-based movement" evidence=TAS

GO:0047496 "vesicle transport along microtubule" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=IDA

GO:0043268 "positive regulation of potassium ion transport" evidence=IDA

GO:0042391 "regulation of membrane potential" evidence=IDA

GO:0035617 "stress granule disassembly" evidence=ISS

MGI|MGI:1098268 Kif5b "kinesin family member 5B" [Mus musculus (taxid:10090)]

 Score = 455 (165.2 bits), Expect = 4.7e-42, P = 4.7e-42
 Identities = 91/108 (84%), Positives = 99/108 (91%)

Query:     7 ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
             +S+D GGS AQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct:   818 DSDDTGGSAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 877

Query:    67 ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIR 114
             E+ALKEAKE A +DRKRYQ EVDRIKEAVR KN+ARRG + QIAKPIR
Sbjct:   878 ESALKEAKENASRDRKRYQQEVDRIKEAVRSKNMARRGHSAQIAKPIR 925

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005871 "kinesin complex" evidence=TAS

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0006839 "mitochondrial transport" evidence=TAS

GO:0007017 "microtubule-based process" evidence=TAS

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IMP

GO:0008017 "microtubule binding" evidence=ISO

GO:0008152 "metabolic process" evidence=TAS

GO:0031982 "vesicle" evidence=ISO

GO:0035253 "ciliary rootlet" evidence=IDA

GO:0035617 "stress granule disassembly" evidence=IMP

GO:0042391 "regulation of membrane potential" evidence=ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043227 "membrane-bounded organelle" evidence=IDA

GO:0043268 "positive regulation of potassium ion transport" evidence=ISO

GO:0047496 "vesicle transport along microtubule" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=ISO

RGD|621559 Kif5b "kinesin family member 5B" [Rattus norvegicus (taxid:10116)]

 Score = 455 (165.2 bits), Expect = 4.7e-42, P = 4.7e-42
 Identities = 91/108 (84%), Positives = 99/108 (91%)

Query:     7 ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
             +S+D GGS AQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct:   818 DSDDTGGSAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 877

Query:    67 ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIR 114
             E+ALKEAKE A +DRKRYQ EVDRIKEAVR KN+ARRG + QIAKPIR
Sbjct:   878 ESALKEAKENASRDRKRYQQEVDRIKEAVRSKNMARRGHSAQIAKPIR 925

GO:0003777 "microtubule motor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA;ISO

GO:0008017 "microtubule binding" evidence=IDA

GO:0031982 "vesicle" evidence=ISO;ISS

GO:0035253 "ciliary rootlet" evidence=IEA;ISO

GO:0035617 "stress granule disassembly" evidence=IEA;ISO

GO:0042391 "regulation of membrane potential" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=IEA;ISO

GO:0043227 "membrane-bounded organelle" evidence=ISO

GO:0043268 "positive regulation of potassium ion transport" evidence=IEA;ISO

GO:0047496 "vesicle transport along microtubule" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=IEA;ISO

UNIPROTKB|E1C3A1 KIF5B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 455 (165.2 bits), Expect = 4.7e-42, P = 4.7e-42
 Identities = 91/108 (84%), Positives = 99/108 (91%)

Query:     7 ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
             +S+D GGS AQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct:   818 DSDDTGGSAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 877

Query:    67 ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIR 114
             E+ALKEAKE A +DRKRYQ EVDRIKEAVR KN+ARRG + QIAKPIR
Sbjct:   878 ESALKEAKENASRDRKRYQQEVDRIKEAVRSKNMARRGHSAQIAKPIR 925

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0035617 "stress granule disassembly" evidence=IEA

GO:0042391 "regulation of membrane potential" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043268 "positive regulation of potassium ion transport" evidence=IEA

GO:0090004 "positive regulation of establishment of protein localization to plasma membrane" evidence=IEA

UNIPROTKB|F1NE00 KIF5C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 454 (164.9 bits), Expect = 5.5e-42, P = 5.5e-42
 Identities = 91/108 (84%), Positives = 99/108 (91%)

Query:     7 ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
             +S+D GGS AQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct:   810 DSDDGGGSAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 869

Query:    67 ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIR 114
             E+ALKEAKE AM+DRKRYQ EVDRIKEAVR KN+ARR  + QIAKPIR
Sbjct:   870 ESALKEAKENAMRDRKRYQQEVDRIKEAVRAKNMARRAHSAQIAKPIR 917

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|I3LUB8 KIF5C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 454 (164.9 bits), Expect = 5.7e-42, P = 5.7e-42
 Identities = 91/108 (84%), Positives = 99/108 (91%)

Query:     7 ESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66
             +S+D GGS AQ+QKISFLENNL+QLTKVHKQLVRDNADLRCELPKLEKRLRAT ERVKAL
Sbjct:   809 DSDDGGGSAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKAL 868

Query:    67 ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIR 114
             E+ALKEAKE AM+DRKRYQ EVDRIKEAVR KN+ARR  + QIAKPIR
Sbjct:   869 ESALKEAKENAMRDRKRYQQEVDRIKEAVRAKNMARRAHSAQIAKPIR 916

GO:0043005 "neuron projection" evidence=IEA

GO:0035253 "ciliary rootlet" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P17210	KINH_DROME	No assigned EC number	0.8688	0.7843	0.1230	yes	N/A
P35978	KINH_STRPU	No assigned EC number	0.8130	0.6862	0.1018	yes	N/A
Q61768	KINH_MOUSE	No assigned EC number	0.7716	0.7973	0.1266	yes	N/A
P33176	KINH_HUMAN	No assigned EC number	0.7795	0.7973	0.1266	yes	N/A
Q2PQA9	KINH_RAT	No assigned EC number	0.7716	0.7973	0.1266	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	96.62
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	94.25
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	94.1
PRK11637	428	AmiB activator; Provisional	93.88
PF08232	134	Striatin: Striatin family; InterPro: IPR013258 Thi	92.69
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	92.56
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	92.4
PF11594	106	Med28: Mediator complex subunit 28; InterPro: IPR0	92.38
PRK11637	428	AmiB activator; Provisional	91.5
PF00038	312	Filament: Intermediate filament protein; InterPro:	91.18
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	87.5
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	86.8
PRK10884	206	SH3 domain-containing protein; Provisional	86.55
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	85.07
PLN02939	977	transferase, transferring glycosyl groups	85.02
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	84.82
KOG1853|consensus	333		84.57
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	83.99
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	83.57
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	82.42
KOG0972|consensus	384		82.1
KOG0243|consensus	1041		81.69
COG4026	290	Uncharacterized protein containing TOPRIM domain,	81.45
PF12240	205	Angiomotin_C: Angiomotin C terminal; InterPro: IPR	81.16
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	80.59
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	80.52
KOG0964|consensus	1200		80.12
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	80.1

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=96.62  E-value=0.035  Score=42.34  Aligned_cols=77  Identities=26%  Similarity=0.427  Sum_probs=62.6

Q ss_pred             HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------hhhHHH
Q psy5720          20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK--------------DRKRYQ   85 (153)
Q Consensus        20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k--------------~~~ryq   85 (153)
                      ++.=|+..++.|++-...|-.+++.+..++..++.+.++-...++.++..++..++.+.+              +-+|-+
T Consensus        60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke  139 (151)
T PF11559_consen   60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKE  139 (151)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455577888899999999999999999999999999999999999999999988887665              445556


Q ss_pred             HHHHHHHHHHH
Q psy5720          86 YEVDRIKEAVR   96 (153)
Q Consensus        86 ~Ev~riKe~l~   96 (153)
                      .|++++|++|.
T Consensus       140 ~E~~kLk~rL~  150 (151)
T PF11559_consen  140 REIEKLKERLN  150 (151)
T ss_pred             HHHHHHHHHhc
Confidence            67777777653

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=94.25  E-value=0.13  Score=36.65  Aligned_cols=55  Identities=27%  Similarity=0.512  Sum_probs=44.5

Q ss_pred             HHHHHHHHHhhHHHHH-HHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHH
Q psy5720          17 QRQKISFLENNLDQLT-KVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALK   71 (153)
Q Consensus        17 QkQKiaFLE~NLEQLT-~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLk   71 (153)
                      -|=||-|||..|.+++ .-...+..+|.+||-++..+.+-|......|..++.++.
T Consensus        19 LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e   74 (75)
T PF07989_consen   19 LKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE   74 (75)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4668999999999874 455678899999999999999988888777777777653

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=94.10  E-value=1.9  Score=33.27  Aligned_cols=79  Identities=18%  Similarity=0.329  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHH
Q psy5720          16 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRY-QYEVDRIKEA   94 (153)
Q Consensus        16 aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ry-q~Ev~riKe~   94 (153)
                      .-+-+.+-|++.||.++.-|.+|+.++-.|+.-+..|.-...+++-||-.|+.-+.|+.-++-..+.-+ +-+....|.-
T Consensus        13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~   92 (107)
T PF09304_consen   13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQ   92 (107)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346678999999999999999999999999999999999999999999999999999988877755544 5555555543

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PRK11637 AmiB activator; Provisional

Probab=93.88  E-value=1.4  Score=38.84  Aligned_cols=84  Identities=13%  Similarity=0.149  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720          17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR   96 (153)
Q Consensus        17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~   96 (153)
                      .+++|.=++..|.++.+..+.+-.+=.+|..++..++..|......|..++.-+...+..+..-..++...-+.++.+++
T Consensus        52 l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr  131 (428)
T PRK11637         52 IQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD  131 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555556666666666666666666666666666666665555555555566665555


Q ss_pred             HHhh
Q psy5720          97 QKNL  100 (153)
Q Consensus        97 ~~n~  100 (153)
                      ....
T Consensus       132 a~Y~  135 (428)
T PRK11637        132 AAFR  135 (428)
T ss_pred             HHHH
Confidence            5543

>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin

Probab=92.69  E-value=0.39  Score=37.14  Aligned_cols=37  Identities=38%  Similarity=0.589  Sum_probs=31.5

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720          18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE   75 (153)
Q Consensus        18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE   75 (153)
                      |-+|+|||-..--+...++.|++                     ||+.||.+|+.-..
T Consensus        31 karIa~LEGE~r~~e~l~~dL~r---------------------rIkMLE~aLkqER~   67 (134)
T PF08232_consen   31 KARIAFLEGERRGQENLKKDLKR---------------------RIKMLEYALKQERA   67 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Confidence            67899999999988888888877                     99999999985443

Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=92.56  E-value=1.2  Score=39.68  Aligned_cols=76  Identities=18%  Similarity=0.344  Sum_probs=67.3

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q psy5720          26 NNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLA  101 (153)
Q Consensus        26 ~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~~  101 (153)
                      ..|||+...++.+...-.+.+..|.++-.-+..+.|+|.+-|..|..-=+.++.+++..+.++..+++.+.+.+.+
T Consensus       220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~  295 (359)
T PF10498_consen  220 SHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG  295 (359)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            4688888888888888899999999999999999999999999999998999999999999998888888766543

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=92.40  E-value=0.32  Score=34.33  Aligned_cols=32  Identities=19%  Similarity=0.240  Sum_probs=28.0

Q ss_pred             HHHHhhHHHHHHHHHHHHhhhhhhhcchHHHH
Q psy5720          22 SFLENNLDQLTKVHKQLVRDNADLRCELPKLE   53 (153)
Q Consensus        22 aFLE~NLEQLT~VhKQLV~dNa~Lk~El~klE   53 (153)
                      .-||..+|+|-..+.+|-++|+.|+.++..+.
T Consensus         3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~   34 (65)
T TIGR02449         3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWR   34 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999999886543

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=92.38  E-value=0.74  Score=35.43  Aligned_cols=60  Identities=22%  Similarity=0.351  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHH-hhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720          16 AQRQKISFLENNLDQLTKVHKQLV-RDNADLRCELPKLEKRLRATMERVKALETALKEAKE   75 (153)
Q Consensus        16 aQkQKiaFLE~NLEQLT~VhKQLV-~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE   75 (153)
                      +.+-+.-||+.-++==+.--++++ +++..||+|+.+-|..|.--.++|..++.+|.+++.
T Consensus        17 aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~   77 (106)
T PF11594_consen   17 ARQMEAFFLQKRFELSAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQN   77 (106)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            556677788776654222334555 899999999999999999999999999999998874

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].

>PRK11637 AmiB activator; Provisional

Probab=91.50  E-value=2.9  Score=36.91  Aligned_cols=12  Identities=0%  Similarity=0.088  Sum_probs=4.9

Q ss_pred             HHHHHHHHHhhH
Q psy5720          17 QRQKISFLENNL   28 (153)
Q Consensus        17 QkQKiaFLE~NL   28 (153)
                      .++++.-++..+
T Consensus        59 ~~~~i~~~~~~~   70 (428)
T PRK11637         59 KEKSVRQQQQQR   70 (428)
T ss_pred             HHHHHHHHHHHH
Confidence            334444443333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=91.18  E-value=6.3  Score=32.73  Aligned_cols=78  Identities=19%  Similarity=0.335  Sum_probs=53.2

Q ss_pred             HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720          20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ   97 (153)
Q Consensus        20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~   97 (153)
                      |+.=|.....+-+..-..+-.++..+|+.+..++..|..--.+..+||..|.+.+.....+...|+..|..+...+..
T Consensus       196 k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~  273 (312)
T PF00038_consen  196 KLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAE  273 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence            333344334444444445556677777777778877777777788888888888888888888888777766665543

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=87.50  E-value=5.2  Score=37.59  Aligned_cols=75  Identities=20%  Similarity=0.364  Sum_probs=48.2

Q ss_pred             HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHH-HHH---HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720          21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKA-LET---ALKEAKEGAMKDRKRYQYEVDRIKEAV   95 (153)
Q Consensus        21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~-LE~---aLkeakE~~~k~~~ryq~Ev~riKe~l   95 (153)
                      +.-|-..+-+|.+-...|..||.+|+.|-..|.+|...-..||.. |++   .|..-++.+..++...+..++.+...|
T Consensus        61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l  139 (472)
T TIGR03752        61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL  139 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556667778888888888899999999998888888888877752 222   223333333334444444444444444

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=86.80  E-value=6.3  Score=33.80  Aligned_cols=73  Identities=23%  Similarity=0.352  Sum_probs=53.0

Q ss_pred             HHHHhhHHHHHHHHHHHHhhh---hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720          22 SFLENNLDQLTKVHKQLVRDN---ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR   96 (153)
Q Consensus        22 aFLE~NLEQLT~VhKQLV~dN---a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~   96 (153)
                      .+|..-..++|...+-|+.-+   .+|+.++..+|..|....+|++.+|..|..++.  ++....|+.|++.++++..
T Consensus        31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~--~~e~~aL~~E~~~ak~r~~  106 (239)
T COG1579          31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD--ERELRALNIEIQIAKERIN  106 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHH
Confidence            345555555666666665333   678888899999999999999999988854443  7778888888888877553

>PRK10884 SH3 domain-containing protein; Provisional

Probab=86.55  E-value=14  Score=30.77  Aligned_cols=78  Identities=13%  Similarity=0.215  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHH
Q psy5720          15 LAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK---DRKRYQYEVDRI   91 (153)
Q Consensus        15 ~aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k---~~~ryq~Ev~ri   91 (153)
                      +.-+..+.-||..|++|+   .+|-.-+.++......+..+|.....-|..|+.-.++.++.+..   ++...+++++..
T Consensus        89 p~~~~rlp~le~el~~l~---~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~  165 (206)
T PRK10884         89 PSLRTRVPDLENQVKTLT---DKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK  165 (206)
T ss_pred             ccHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666776666555   55555555556666666777777777677666665555554433   444456666666


Q ss_pred             HHHH
Q psy5720          92 KEAV   95 (153)
Q Consensus        92 Ke~l   95 (153)
                      ++..
T Consensus       166 ~~~~  169 (206)
T PRK10884        166 QRTI  169 (206)
T ss_pred             HHHH
Confidence            6544

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=85.07  E-value=2.9  Score=27.85  Aligned_cols=39  Identities=23%  Similarity=0.414  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q psy5720          17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKR   55 (153)
Q Consensus        17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKr   55 (153)
                      .++.|..||..++.|+.-..+|-.++..|+.++..|...
T Consensus        24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e   62 (64)
T PF00170_consen   24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE   62 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            466788899999999988888888888888887776653

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PLN02939 transferase, transferring glycosyl groups

Probab=85.02  E-value=8.4  Score=39.05  Aligned_cols=80  Identities=26%  Similarity=0.389  Sum_probs=64.0

Q ss_pred             HHHHHHHhhHHHHHHHHH--HHH-hhhhhhhcchHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHhhh
Q psy5720          19 QKISFLENNLDQLTKVHK--QLV-RDNADLRCELPKLEKRLRAT-------------MERVKALETALKEAKEGAMKDRK   82 (153)
Q Consensus        19 QKiaFLE~NLEQLT~VhK--QLV-~dNa~Lk~El~klEKrL~ar-------------~ERIk~LE~aLkeakE~~~k~~~   82 (153)
                      .|..-|+.=|+.+|+---  -|| .+|-||+..|.++|.-|...             .++|+.||..|+.+.+.+...-+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (977)
T PLN02939        300 EKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQ  379 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            455667777777776433  233 89999999999999877543             37899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy5720          83 RYQYEVDRIKEAVRQK   98 (153)
Q Consensus        83 ryq~Ev~riKe~l~~~   98 (153)
                      -||++++...+.+..-
T Consensus       380 ~~~~~~~~~~~~~~~~  395 (977)
T PLN02939        380 LYQESIKEFQDTLSKL  395 (977)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999998877543

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=84.82  E-value=4.3  Score=28.81  Aligned_cols=60  Identities=25%  Similarity=0.269  Sum_probs=38.6

Q ss_pred             hHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720          27 NLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ   97 (153)
Q Consensus        27 NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~   97 (153)
                      -|++|..-=.++|...+-|+-|+..|+.+-.+-           ++..+.+...+.+++++-..+.++++.
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L-----------~~e~~~L~~en~~L~~e~~~~~~rl~~   64 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNEL-----------KEENEELKEENEQLKQERNAWQERLRS   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356676666778888888888887776653332           244555555666666666666666643

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG1853|consensus

Probab=84.57  E-value=30  Score=31.12  Aligned_cols=91  Identities=36%  Similarity=0.518  Sum_probs=53.7

Q ss_pred             HHHHHHHhhHHHHHHHHHH-------HHhhhhhhhc-------chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy5720          19 QKISFLENNLDQLTKVHKQ-------LVRDNADLRC-------ELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRY   84 (153)
Q Consensus        19 QKiaFLE~NLEQLT~VhKQ-------LV~dNa~Lk~-------El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ry   84 (153)
                      |-++-||..|-|+-...-|       |-.-|.+|-.       -+.-+|.||..--||+--||+-|-| +|.+.-.=+|+
T Consensus        91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdE-ke~llesvqRL  169 (333)
T KOG1853|consen   91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDE-KEVLLESVQRL  169 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHH
Confidence            3466777777665554444       4445666643       2466788999999999999998866 44444443333


Q ss_pred             HHHHHHHHH--HHHHHhhcCCCCCCccccccC
Q psy5720          85 QYEVDRIKE--AVRQKNLARRGPAPQIAKPIR  114 (153)
Q Consensus        85 q~Ev~riKe--~l~~~n~~rr~~~arIAKPiR  114 (153)
                      -.|-.-++.  +|+.+..-+    .||.-|.+
T Consensus       170 kdEardlrqelavr~kq~E~----pR~~~Pss  197 (333)
T KOG1853|consen  170 KDEARDLRQELAVRTKQTER----PRIVEPSS  197 (333)
T ss_pred             HHHHHHHHHHHHHHHhhccC----CCcCCccc
Confidence            333333322  233333222    37888887

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=83.99  E-value=17  Score=27.68  Aligned_cols=60  Identities=25%  Similarity=0.406  Sum_probs=35.0

Q ss_pred             HHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720          35 HKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK   98 (153)
Q Consensus        35 hKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~   98 (153)
                      ...|-.++..|+.++..+|+.+..--++..+|+..++.+..    ..+....|+.+++..+.+.
T Consensus        68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~----~~k~~kee~~klk~~~~~~  127 (151)
T PF11559_consen   68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA----KLKQEKEELQKLKNQLQQR  127 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            33444455555555666666666666666666665554443    4455566777777766544

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=83.57  E-value=20  Score=34.24  Aligned_cols=54  Identities=20%  Similarity=0.367  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHH
Q psy5720          17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETAL   70 (153)
Q Consensus        17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aL   70 (153)
                      +++++.-|+...+.|+..+..|...|..|+++...+..|+..--+.|..|..-.
T Consensus       183 ~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  183 EEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555566666666666666666666666666655555555544333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=82.42  E-value=10  Score=37.68  Aligned_cols=71  Identities=20%  Similarity=0.308  Sum_probs=62.6

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy5720          19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVD   89 (153)
Q Consensus        19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~   89 (153)
                      .|+.+|....|.-++....|-.+|-.|++.+..--+++..-.-.|..|+--|..++...--..++|+-+|+
T Consensus       594 nk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie  664 (786)
T PF05483_consen  594 NKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIE  664 (786)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            46677777788888899999999999999999999999999999999999999999877778888887766

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0972|consensus

Probab=82.10  E-value=13  Score=34.00  Aligned_cols=74  Identities=20%  Similarity=0.371  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q psy5720          28 LDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLA  101 (153)
Q Consensus        28 LEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~~  101 (153)
                      |+|+...|+-+...-....--|.++-+-..-.-|+|.+=|..|..-=+.+|...++.+.++..++++..|.+.+
T Consensus       229 ~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g  302 (384)
T KOG0972|consen  229 LEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG  302 (384)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            45555555444322244455567777888889999999999999999999999999999999999998887654

>KOG0243|consensus

Probab=81.69  E-value=17  Score=37.31  Aligned_cols=61  Identities=23%  Similarity=0.311  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy5720          17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGA   77 (153)
Q Consensus        17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~   77 (153)
                      +..++.-++.+|.+|+.-.--.+..|..|+.++.+++++|.-++.-+..++..+.+++..+
T Consensus       453 le~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l  513 (1041)
T KOG0243|consen  453 LEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL  513 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555565555544444567789999999999999999999999999999988873

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=81.45  E-value=13  Score=32.90  Aligned_cols=67  Identities=25%  Similarity=0.324  Sum_probs=48.2

Q ss_pred             HhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720          25 ENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV   95 (153)
Q Consensus        25 E~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l   95 (153)
                      ...++.+.---..++.+|..|..|+..+|..+.+-+||++.||.-+.--.|    ..+++.-++.++|.++
T Consensus       134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE----~~~~l~~ev~~L~~r~  200 (290)
T COG4026         134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEE----MLKKLPGEVYDLKKRW  200 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhchhHHHHHHHHH
Confidence            344444444344677899999999999999999999999999986544333    3455666666666654

>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin

Probab=81.16  E-value=8  Score=32.86  Aligned_cols=48  Identities=27%  Similarity=0.335  Sum_probs=41.6

Q ss_pred             HHHhhHHHHHHHHHHHHhhhhhhhc-chHHHHHHHHHhHHHHHHHHHHH
Q psy5720          23 FLENNLDQLTKVHKQLVRDNADLRC-ELPKLEKRLRATMERVKALETAL   70 (153)
Q Consensus        23 FLE~NLEQLT~VhKQLV~dNa~Lk~-El~klEKrL~ar~ERIk~LE~aL   70 (153)
                      -||+.|+-|..-|++=..+++.... ..+-|-.+|+-+-|||.+||+-+
T Consensus        32 ~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~   80 (205)
T PF12240_consen   32 RLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADM   80 (205)
T ss_pred             HHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999988777776665 78999999999999999999855

Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=80.59  E-value=24  Score=28.47  Aligned_cols=76  Identities=22%  Similarity=0.370  Sum_probs=60.3

Q ss_pred             HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHH
Q psy5720          21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRY---QYEVDRIKEAVRQ   97 (153)
Q Consensus        21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ry---q~Ev~riKe~l~~   97 (153)
                      |.-+|++=+|+...=-+--.+...|+.||..+...+..+.+.|..||..-+.|+.+++.=.+.|   ..  +.||+++..
T Consensus         8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE--~dik~AYe~   85 (159)
T PF05384_consen    8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSE--EDIKEAYEE   85 (159)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCH--HHHHHHHHH
Confidence            5667778888887777777888999999999999999999999999999999999997744433   32  245555554


Q ss_pred             H
Q psy5720          98 K   98 (153)
Q Consensus        98 ~   98 (153)
                      +
T Consensus        86 A   86 (159)
T PF05384_consen   86 A   86 (159)
T ss_pred             H
Confidence            4

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=80.52  E-value=3.1  Score=28.75  Aligned_cols=42  Identities=29%  Similarity=0.567  Sum_probs=24.3

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHH
Q psy5720          19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALE   67 (153)
Q Consensus        19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE   67 (153)
                      -|++|+|.-+|+|..|=-+.       ..++.++++.|..-.+||++++
T Consensus        11 ~~la~qe~~ie~Ln~~v~~Q-------q~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen   11 IKLAFQEDTIEELNDVVTEQ-------QRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhc
Confidence            37888888888887653222       3455666666666666666665

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>KOG0964|consensus

Probab=80.12  E-value=12  Score=38.73  Aligned_cols=78  Identities=18%  Similarity=0.388  Sum_probs=57.4

Q ss_pred             HHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHH------------------------H
Q psy5720          22 SFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEG------------------------A   77 (153)
Q Consensus        22 aFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~------------------------~   77 (153)
                      .||-+.+++|..+---.-++-+.|..|+..+|+-|.+..|+|+.|+..+.+.+-+                        +
T Consensus       393 kwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~l  472 (1200)
T KOG0964|consen  393 KWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKEL  472 (1200)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4777788888766655666668899999999999999999999999988744322                        2


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHh
Q psy5720          78 MKDRKRYQYEVDRIKEAVRQKN   99 (153)
Q Consensus        78 ~k~~~ryq~Ev~riKe~l~~~n   99 (153)
                      .++-++++..++.+++-|.+++
T Consensus       473 WREE~~l~~~i~~~~~dl~~~~  494 (1200)
T KOG0964|consen  473 WREEKKLRSLIANLEEDLSRAE  494 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            2344556666777777665543

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=80.10  E-value=18  Score=29.76  Aligned_cols=36  Identities=31%  Similarity=0.470  Sum_probs=19.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHH
Q psy5720          18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEK   54 (153)
Q Consensus        18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEK   54 (153)
                      ..=|+||+ +|.........|-.+|..|+.|+.++..
T Consensus        83 ~~vI~fLq-~l~~~~~~~~~~~~e~~~l~~e~~~l~~  118 (161)
T TIGR02894        83 QDVISFLQ-NLKTTNPSDQALQKENERLKNQNESLQK  118 (161)
T ss_pred             HHHHHHHH-HHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            34478884 3554443444455555555555555544

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	153
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 33/160 (20%)

Query: 24  LENNLDQLTKVHKQLVRDN-----ADLRC----ELPK--LEKR-------LRATMERVKA 65
           ++    +    +K ++         +  C    ++PK  L K         +  +     
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 66  LETALKEAKEGAMK------DRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPV 119
           L   L   +E  ++       R  Y++ +  IK   RQ ++  R    Q  +     Q  
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 120 VP-PVIRPGGVTSPR-WGDEERKRKVI----MGGGATRGK 153
               V R       R    E R  K +    + G    GK
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GK 163

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 15/45 (33%)

Query: 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATME 61
          ++Q +  L+ +L    K++     D+A      P L   ++ATME
Sbjct: 18 EKQALKKLQASL----KLYAD---DSA------PALA--IKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	153
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	92.02
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	88.72
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	88.23
1d7m_A	101	Cortexillin I; coiled-coil, coiled-coil trigger si	86.57
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	86.16
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	85.77
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	85.25
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	85.04
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	84.79
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	84.36
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	84.1
3mov_A	95	Lamin-B1; LMNB1, B-type lamins, intermediate filam	82.32
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	82.29
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	81.29
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	81.17
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	80.12
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	80.02

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=92.02  E-value=2.6  Score=30.58  Aligned_cols=59  Identities=19%  Similarity=0.237  Sum_probs=39.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5720          18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEG   76 (153)
Q Consensus        18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~   76 (153)
                      ++||.-|+..++.+..--..|-.+=..|+.++..++..+..-...+..++..+......
T Consensus         5 ~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (284)
T 1c1g_A            5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEA   63 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888888888887777777766666677676666666666666666666555444433

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=88.72  E-value=4.9  Score=29.45  Aligned_cols=75  Identities=17%  Similarity=0.208  Sum_probs=46.5

Q ss_pred             HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720          21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT----MERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR   96 (153)
Q Consensus        21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar----~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~   96 (153)
                      |.=|-+++..|+.==-.|-..|+.|.+.|..+|.+....    ...|..||..|..++..+.+..+-|| ++--||-+|.
T Consensus        40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq-~Ll~vKl~Ld  118 (131)
T 3tnu_A           40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK-ILLDVKTRLE  118 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            333344444443322333455777777777766665443    44677889999988888888888886 5656665554

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=88.23  E-value=6  Score=28.86  Aligned_cols=78  Identities=23%  Similarity=0.322  Sum_probs=52.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy5720          18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRA----TMERVKALETALKEAKEGAMKDRKRYQYEVDRIKE   93 (153)
Q Consensus        18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~a----r~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe   93 (153)
                      |..|.=|-+++..|+.==-.|-..|+.|-+.|..+|.+...    -...|..||..|..++..+.+..+-|| ++--||-
T Consensus        35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq-~LlnvKl  113 (129)
T 3tnu_B           35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQ-ELMNTKL  113 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            34455555555555544344456677887777777766544    345677899999999998888888887 5666666


Q ss_pred             HHH
Q psy5720          94 AVR   96 (153)
Q Consensus        94 ~l~   96 (153)
                      +|.
T Consensus       114 ~Ld  116 (129)
T 3tnu_B          114 ALD  116 (129)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1

Probab=86.57  E-value=5.1  Score=29.64  Aligned_cols=60  Identities=25%  Similarity=0.349  Sum_probs=52.9

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy5720          19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAM   78 (153)
Q Consensus        19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~   78 (153)
                      .+.+-||+.||-=..-+-+|..|-.+|+.-+..++.-=..|+-||..|++-|-++=-++-
T Consensus         4 n~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~   63 (101)
T 1d7m_A            4 NRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLE   63 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            478889999998888899999999999999999999999999999999998888765554

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=86.16  E-value=1.6  Score=29.95  Aligned_cols=40  Identities=28%  Similarity=0.459  Sum_probs=34.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q psy5720          18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLR   57 (153)
Q Consensus        18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~   57 (153)
                      .+.|.-||..+++|...+.+|..+|..|+.++..|...|.
T Consensus        28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~   67 (70)
T 1gd2_E           28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR   67 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999988776553

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=85.77  E-value=12  Score=29.94  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=27.8

Q ss_pred             HHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHh
Q psy5720          22 SFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT   59 (153)
Q Consensus        22 aFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar   59 (153)
                      +.||..|+++.+-.++|...|+.|+.|+..+..++...
T Consensus        45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~   82 (189)
T 2v71_A           45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ   82 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677777777777888888888888877776666554

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=85.25  E-value=7.7  Score=28.20  Aligned_cols=40  Identities=23%  Similarity=0.306  Sum_probs=23.9

Q ss_pred             HHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5720          35 HKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAK   74 (153)
Q Consensus        35 hKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeak   74 (153)
                      |-.|.|.|++.-+.|.....=-.--..-++.|+.-+.+++
T Consensus         3 Hi~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~   42 (107)
T 2no2_A            3 HADLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS   42 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6678888888887776554433333344455555555544

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=85.04  E-value=8.5  Score=37.27  Aligned_cols=76  Identities=12%  Similarity=0.164  Sum_probs=46.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHH----------HhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy5720          18 RQKISFLENNLDQLTKVHKQL----------VRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYE   87 (153)
Q Consensus        18 kQKiaFLE~NLEQLT~VhKQL----------V~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~E   87 (153)
                      .++++-|+..++.|...++++          -.+.++|+.++.++.+-+...-|++..|..-|.+--..+-+++.+++++
T Consensus       959 ~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq 1038 (1080)
T 2dfs_A          959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTE 1038 (1080)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666766666666655543          3444555555555555555555556555555655555666688888888


Q ss_pred             HHHHHH
Q psy5720          88 VDRIKE   93 (153)
Q Consensus        88 v~riKe   93 (153)
                      ++.+..
T Consensus      1039 ~~~l~~ 1044 (1080)
T 2dfs_A         1039 KEELNR 1044 (1080)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888764

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=84.79  E-value=3.2  Score=31.36  Aligned_cols=29  Identities=21%  Similarity=0.288  Sum_probs=13.1

Q ss_pred             hhhhcchHHHHHHHHHhHHHHHHHHHHHH
Q psy5720          43 ADLRCELPKLEKRLRATMERVKALETALK   71 (153)
Q Consensus        43 a~Lk~El~klEKrL~ar~ERIk~LE~aLk   71 (153)
                      ..++.++..+.+++..-.++|..||+-|.
T Consensus       106 e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A          106 ESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=84.36  E-value=5.6  Score=29.17  Aligned_cols=58  Identities=22%  Similarity=0.297  Sum_probs=42.6

Q ss_pred             hhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720          41 DNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK   98 (153)
Q Consensus        41 dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~   98 (153)
                      +..+|++-+..|+-.|.+---...+||..|.++......+...|+..|..+...+.+.
T Consensus        39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~   96 (131)
T 3tnu_A           39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQL   96 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466777777777777766666789999999999988887777777777666666443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=84.10  E-value=6.9  Score=28.50  Aligned_cols=58  Identities=12%  Similarity=0.262  Sum_probs=43.7

Q ss_pred             hhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720          41 DNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK   98 (153)
Q Consensus        41 dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~   98 (153)
                      +..+|++-+..|+-.|.+---...+||..|.++......+-..|+..|..+...+.+.
T Consensus        37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~   94 (129)
T 3tnu_B           37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKA   94 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            3466777777777777777777889999999999888777777777777766665443

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=82.29  E-value=8.1  Score=30.30  Aligned_cols=60  Identities=13%  Similarity=0.187  Sum_probs=41.1

Q ss_pred             HHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHH
Q psy5720          36 KQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE---GAMKDRKRYQYEVDRIKEAV   95 (153)
Q Consensus        36 KQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE---~~~k~~~ryq~Ev~riKe~l   95 (153)
                      .++|.+|..+...+..|++-|....++|..|+..|++-.-   .+.-+...++.|+..+.+++
T Consensus        57 ~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl  119 (152)
T 3a7p_A           57 GNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKL  119 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688888888889999999999999999999977766442   22224444444444444433

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=81.29  E-value=10  Score=25.69  Aligned_cols=62  Identities=19%  Similarity=0.221  Sum_probs=26.9

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720          18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK   79 (153)
Q Consensus        18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k   79 (153)
                      +.||.-|+..+|...-=--++-.+.-.......++|-=+.+-.-+|+.||.-|-.+++.+..
T Consensus         5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~   66 (81)
T 1ic2_A            5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD   66 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67787776655543322222222222222233333444444444445555544444444433

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=81.17  E-value=11  Score=25.86  Aligned_cols=56  Identities=18%  Similarity=0.320  Sum_probs=38.6

Q ss_pred             hhhhhhhcchHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720          40 RDNADLRCELPKLEKRLRA----TMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR   96 (153)
Q Consensus        40 ~dNa~Lk~El~klEKrL~a----r~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~   96 (153)
                      .+|+.|...+..+|.+...    -...|..||..|..++..+.+..+-||. +=-||-+|.
T Consensus         8 ~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~-LlnvK~~Ld   67 (84)
T 1gk4_A            8 GTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQD-LLNVKMALD   67 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhH
Confidence            3566666666666665443    4567788999999999998888888854 444555543

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=80.12  E-value=4.4  Score=34.88  Aligned_cols=53  Identities=25%  Similarity=0.428  Sum_probs=38.1

Q ss_pred             hhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHH
Q psy5720          44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK---DRKRYQYEVDRIKEAVR   96 (153)
Q Consensus        44 ~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k---~~~ryq~Ev~riKe~l~   96 (153)
                      .|+.++..+++.+....+.|+.|+..+++.++.+.+   .|+++..+++.+|..++
T Consensus         7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIr   62 (403)
T 4etp_A            7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIR   62 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence            455666667777777777777777777777776666   67888888888876543

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=80.02  E-value=2.5  Score=27.40  Aligned_cols=39  Identities=26%  Similarity=0.360  Sum_probs=28.3

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q psy5720          18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL   56 (153)
Q Consensus        18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL   56 (153)
                      ++.+.-||...+.|+.-...|..+-..|+.|+..|.-.|
T Consensus        21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456788888888888777777777777777776665544

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00