Psyllid ID: psy5731

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MWLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQAAVAAAAVSTLQKPLAYRLYPGVPATANASHSLSPPGLAATSLSSISSYYNNLNLTRSCSPDNAMGGSRGSHTPDSQPESVDVEESSNDSPSNNKIDV
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccHcccccccHHHHHHccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MWLTAVRTKWKRQTAVGLELLAEAGNYAAFQrlyggptygcwpyqgggttqpsAADLYYRQAAVAAAAVSTLQKplayrlypgvpatanashslsppglaatSLSSISSYYNnlnltrscspdnamggsrgshtpdsqpesvdveessndspsnnkidv
Flexible Loop (DISEMBL)
mwltavrtkwkrqtAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQAAVAAAAVSTLQKPLAYRLYPGVPATANASHSLSPPGLAATSLSSISSYYNNLNLTRSCSPDNAMGGSRGshtpdsqpesvdveessndspsnnkidv
Low Complexity Region (SEG)
MWLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQaavaaaavSTLQKPLAYRLYPGVPATANASHSLSPPGLAATslssissyynnlnlTRSCSPDNAMGGSRGSHTPDSQpesvdveessndspsnnKIDV
Disordered region (IsUnstruct)
*WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQAAVAAAAVSTLQKPLAYRLYPGVPA************************Y************************************************
Disordered Region (DISOPRED)
MWL*AV*TKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQAAVAAAAVSTLQKPLAYRLY******************************************************************************
Disordered Region (DISEMBL)
MWLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQAAVAAAAVSTLQKPLAYRLYPGVPATANASHSLSPPGLAATSLSSISSYYNNLNLTRSCSPD************************************
Disordered Region (DISPRO)
MWLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQAAVAAAAVSTLQKPLAYRLYPGVPATANASHSLSPPGLAATSLSSISSYYNNLNLTRSC*P*************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQAAVAAAAVSTLQKPLAYRLYPGVPATANASHSLSPPGLAATSLSSISSYYNNLNLTRSCSPDNAMGGSRGSHTPDSQPESVDVEESSNDSPSNNKIDV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q24256	645	Homeobox protein B-H2 OS=	yes	N/A	0.477	0.117	0.582	8e-18
P22544	606	Homeobox protein B-H1 OS=	N/A	N/A	0.477	0.125	0.576	1e-16
Q24255	544	Homeobox protein B-H1 OS=	no	N/A	0.477	0.139	0.581	1e-14
Q9BZE3	327	BarH-like 1 homeobox prot	yes	N/A	0.465	0.226	0.481	7e-11
P63156	327	BarH-like 1 homeobox prot	yes	N/A	0.465	0.226	0.481	8e-11
P63157	327	BarH-like 1 homeobox prot	yes	N/A	0.465	0.226	0.481	8e-11
Q9NY43	387	BarH-like 2 homeobox prot	no	N/A	0.238	0.098	0.684	1e-09
Q8VIB5	384	BarH-like 2 homeobox prot	no	N/A	0.238	0.098	0.684	2e-09
O88181	384	BarH-like 2 homeobox prot	no	N/A	0.238	0.098	0.684	2e-09
Q22910	260	Homeobox protein ceh-31 O	yes	N/A	0.201	0.123	0.593	0.0001

>sp|Q24256|BARH2_DROME Homeobox protein B-H2 OS=Drosophila melanogaster GN=B-H2 PE=1 SV=3

 Score = 89.4 bits (220), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 58/91 (63%), Gaps = 15/91 (16%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGG--PTYGCWPYQGGGTTQ------PS 53
           W    RTKWKRQTAVGLELLAEAGNYAAFQRLYGG  P    WPY      Q      PS
Sbjct: 427 WYQNRRTKWKRQTAVGLELLAEAGNYAAFQRLYGGATPYLSAWPYAAAAAAQSPHGATPS 486

Query: 54  AADLYYRQAAVAAAAVSTLQK---PLAYRLY 81
           A D+YYRQ    AAA + +QK   P +YR+Y
Sbjct: 487 AIDIYYRQ----AAAAAAMQKPSLPASYRMY 513

B-H1 and B-H2 are regulated by members of the wg signaling pathway; wg and dpp. B-H1 and B-H2 are coexpressed and functionally required in R1 and R6 receptor cells and primary pigment cells for normal eye development. Coexpression is also required for the fate determination of external sensory organs, formation of notal microchaetae, formation of presutural macrochaetae, antennal development and for distal leg morphogenesis; segmentation and specification of tarsal segments 3-5.
Drosophila melanogaster (taxid: 7227)

>sp|P22544|BARH1_DROAN Homeobox protein B-H1 OS=Drosophila ananassae GN=B-H1 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 58/92 (63%), Gaps = 16/92 (17%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGG-PTYGCWPY-----------QGGGT 49
           W    RTKW RQTAVGLELLAEAGN+AAFQRLYGG P  G WPY              G 
Sbjct: 378 WYQNRRTKWMRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAGAAAAAAHGA 437

Query: 50  TQPSAADLYYRQAAVAAAAVSTLQKPLAYRLY 81
           T  ++ D+YYRQAA AAA    +QKPL Y LY
Sbjct: 438 TPHTSIDIYYRQAAAAAA----MQKPLPYNLY 465

Functionally required in R1 and R6 receptor cells and primary pigment cells for normal eye development.

Drosophila ananassae (taxid: 7217)

>sp|Q24255|BARH1_DROME Homeobox protein B-H1 OS=Drosophila melanogaster GN=B-H1 PE=2 SV=2

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 54/86 (62%), Gaps = 10/86 (11%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY------GCWPYQGGGTTQPSAA 55
           W    RTKWKRQTAVGLELLAEAGN+AAFQRLYGG  Y              G T  +  
Sbjct: 346 WYQNRRTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAAHGATPHTNI 405

Query: 56  DLYYRQAAVAAAAVSTLQKPLAYRLY 81
           D+YYRQAA AAA    +QKPL Y LY
Sbjct: 406 DIYYRQAAAAAA----MQKPLPYNLY 427

B-H1 and B-H2 are regulated by members of the wg signaling pathway; wg and dpp. B-H1 and B-H2 are coexpressed and functionally required in R1 and R6 receptor cells and primary pigment cells for normal eye development. Coexpression is also required for the fate determination of external sensory organs, formation of notal microchaetae, formation of presutural macrochaetae, antennal development and for distal leg morphogenesis; segmentation and specification of tarsal segments 3-5.

Drosophila melanogaster (taxid: 7227)

>sp|Q9BZE3|BARH1_HUMAN BarH-like 1 homeobox protein OS=Homo sapiens GN=BARHL1 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 46/79 (58%), Gaps = 5/79 (6%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQ 61
           W    RTKWKRQTAVGLELLAEAGNY+A QR++  P +  +P        P AA   YR 
Sbjct: 225 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF--YPQSLVSNLDPGAALYLYRG 282

Query: 62  AAVAAAAVSTLQKPLAYRL 80
            +    A   LQ+PL  R+
Sbjct: 283 PSAPPPA---LQRPLVPRI 298

Homo sapiens (taxid: 9606)

>sp|P63156|BARH1_RAT BarH-like 1 homeobox protein OS=Rattus norvegicus GN=Barhl1 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 46/79 (58%), Gaps = 5/79 (6%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQ 61
           W    RTKWKRQTAVGLELLAEAGNY+A QR++  P +  +P        P AA   YR 
Sbjct: 225 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF--YPQSLVSNLDPGAALYLYRG 282

Query: 62  AAVAAAAVSTLQKPLAYRL 80
            +    A   LQ+PL  R+
Sbjct: 283 PSAPPPA---LQRPLVPRI 298

Rattus norvegicus (taxid: 10116)

>sp|P63157|BARH1_MOUSE BarH-like 1 homeobox protein OS=Mus musculus GN=Barhl1 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 46/79 (58%), Gaps = 5/79 (6%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQ 61
           W    RTKWKRQTAVGLELLAEAGNY+A QR++  P +  +P        P AA   YR 
Sbjct: 225 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF--YPQSLVSNLDPGAALYLYRG 282

Query: 62  AAVAAAAVSTLQKPLAYRL 80
            +    A   LQ+PL  R+
Sbjct: 283 PSAPPPA---LQRPLVPRI 298

Mus musculus (taxid: 10090)

>sp|Q9NY43|BARH2_HUMAN BarH-like 2 homeobox protein OS=Homo sapiens GN=BARHL2 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 30/38 (78%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY 39
           W    RTKWKRQTAVGLELLAEAGNY+A QR++  P +
Sbjct: 279 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF 316

Potential regulator of neural basic helix-loop-helix genes.

Homo sapiens (taxid: 9606)

>sp|Q8VIB5|BARH2_MOUSE BarH-like 2 homeobox protein OS=Mus musculus GN=Barhl2 PE=2 SV=2

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 30/38 (78%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY 39
           W    RTKWKRQTAVGLELLAEAGNY+A QR++  P +
Sbjct: 276 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF 313

Potential regulator of neural basic helix-loop-helix genes. It may down-regulate expression of ASCL1 and, within the thalamus, up-regulate NGN2, thereby regulating distinct patterns of neuronal differentiation.

Mus musculus (taxid: 10090)

>sp|O88181|BARH2_RAT BarH-like 2 homeobox protein OS=Rattus norvegicus GN=Barhl2 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 30/38 (78%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY 39
           W    RTKWKRQTAVGLELLAEAGNY+A QR++  P +
Sbjct: 276 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF 313

Potential regulator of neural basic helix-loop-helix genes. It may down-regulate expression of ASCL1 and, within the thalamus, up-regulate NGN2, thereby regulating distinct patterns of neuronal differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q22910|HM31_CAEEL Homeobox protein ceh-31 OS=Caenorhabditis elegans GN=ceh-31 PE=4 SV=2

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 24/32 (75%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRL 33
           W    RTKWKRQ +VG++LL +AGN AA Q+L
Sbjct: 141 WYQNRRTKWKRQASVGMDLLHDAGNMAAVQQL 172

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
193712547	365	PREDICTED: hypothetical protein LOC10016	0.974	0.424	0.507	8e-30
158293105	279	Anopheles gambiae str. PEST AGAP012428-P	0.503	0.286	0.704	3e-21
157118923	296	homeobox protein b [Aedes aegypti] gi|10	0.509	0.273	0.707	1e-20
170051736	254	homeobox protein b [Culex quinquefasciat	0.471	0.295	0.734	7e-19
357607974	276	B-H1 [Danaus plexippus]	0.503	0.289	0.666	2e-18
195165531	550	GL19888 [Drosophila persimilis] gi|19410	0.515	0.149	0.571	3e-18
198468115	626	GA28287 [Drosophila pseudoobscura pseudo	0.515	0.130	0.561	3e-18
195432046	696	GK19952 [Drosophila willistoni] gi|19416	0.534	0.122	0.562	1e-17
195393352	547	GJ18855 [Drosophila virilis] gi|19414982	0.540	0.157	0.564	1e-17
195132137	524	GI15964 [Drosophila mojavensis] gi|19390	0.509	0.154	0.583	1e-17

>gi|193712547|ref|XP_001944887.1| PREDICTED: hypothetical protein LOC100167500 [Acyrthosiphon pisum]

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 98/193 (50%), Positives = 110/193 (56%), Gaps = 38/193 (19%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPY----------------Q 45
           W    RTKWKRQTAVGLELLAEAGNYAAFQRLYGGP YGCWPY                 
Sbjct: 176 WYQNRRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPPYGCWPYPAGAAGGAGGVSGGGGV 235

Query: 46  GGGTTQPSAADLYYRQAAVAAAAVSTLQKPLAYRLYPGVPATANASHSLSPPGLAATSLS 105
            G    PSAADLYYRQAAVAAAAVSTLQKPLAYRLYPG+     A+ S +          
Sbjct: 236 SGAGGAPSAADLYYRQAAVAAAAVSTLQKPLAYRLYPGMAGGPGAASSGAGASGHHHHHH 295

Query: 106 SISS---------YYNNLN--------LTRSCSPDNAMGGSRGS--HTPDSQPESVDVEE 146
            I           YY  ++        L RS +P+     SRGS   T DS+P SVDVE+
Sbjct: 296 QIPPPPVPLAHPMYYGGVHHPATMQPMLGRSPTPEPPGRSSRGSPRSTVDSRPGSVDVED 355

Query: 147 SSNDSPSNNKIDV 159
             +DSP+   +DV
Sbjct: 356 DGSDSPN---VDV 365

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158293105|ref|XP_001688571.1| Anopheles gambiae str. PEST AGAP012428-PA [Anopheles gambiae str. PEST] gi|157016875|gb|EDO64025.1| AGAP012428-PA [Anopheles gambiae str. PEST]

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 63/88 (71%), Gaps = 8/88 (9%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY-GCWPY---QGGGTTQPSAADL 57
           W    RTKWKRQTAVGLELLAEAGNYAAFQRLYGGP Y G WPY    G   T  SA D 
Sbjct: 72  WYQNRRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPPYIGAWPYPTPSGPPGTSQSAVDA 131

Query: 58  YYRQAAVAAAAVSTLQKPLAYRLYPGVP 85
           YYR AA AAA    LQKPL YR+YPGVP
Sbjct: 132 YYRHAAAAAA----LQKPLPYRMYPGVP 155

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157118923|ref|XP_001659250.1| homeobox protein b [Aedes aegypti] gi|108875533|gb|EAT39758.1| AAEL008466-PA [Aedes aegypti]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 64/89 (71%), Gaps = 8/89 (8%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY-GCWPY--QGGGTTQP-SAADL 57
           W    RTKWKRQTAVGLELLAEAGNYAAFQRLYGGP Y G WPY  Q G    P SA D 
Sbjct: 91  WYQNRRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPPYLGGWPYPAQAGPPGAPQSAVDA 150

Query: 58  YYRQAAVAAAAVSTLQKPLAYRLYPGVPA 86
           YYR AA AAA    LQKPL YR+YPGVP 
Sbjct: 151 YYRHAAAAAA----LQKPLPYRIYPGVPG 175

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170051736|ref|XP_001861901.1| homeobox protein b [Culex quinquefasciatus] gi|167872857|gb|EDS36240.1| homeobox protein b [Culex quinquefasciatus]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/83 (73%), Positives = 62/83 (74%), Gaps = 8/83 (9%)

Query: 8   TKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY-GCWPY--QGGGTTQP-SAADLYYRQAA 63
           TKWKRQTAVGLELLAEAGNYAAFQRLYGGP Y G WPY  Q G    P SA D YYR AA
Sbjct: 46  TKWKRQTAVGLELLAEAGNYAAFQRLYGGPPYLGGWPYPAQAGPPGAPQSAVDAYYRHAA 105

Query: 64  VAAAAVSTLQKPLAYRLYPGVPA 86
            AAA    LQKPL YR+YPGVP 
Sbjct: 106 AAAA----LQKPLPYRIYPGVPG 124

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357607974|gb|EHJ65768.1| B-H1 [Danaus plexippus]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/90 (66%), Positives = 65/90 (72%), Gaps = 10/90 (11%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPS-AADLYYR 60
           W    RTKWKRQTAVGLELLAEAGNYAAFQRLYGG   G   Y     TQP+ +ADLYYR
Sbjct: 116 WYQNRRTKWKRQTAVGLELLAEAGNYAAFQRLYGGYWAGVPAY----PTQPAPSADLYYR 171

Query: 61  Q-----AAVAAAAVSTLQKPLAYRLYPGVP 85
           Q     AA A+A+ +TLQKPL YRLYPG P
Sbjct: 172 QAAATAAAAASASANTLQKPLPYRLYPGAP 201

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195165531|ref|XP_002023592.1| GL19888 [Drosophila persimilis] gi|194105726|gb|EDW27769.1| GL19888 [Drosophila persimilis]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 62/98 (63%), Gaps = 16/98 (16%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGG-PTYGCWPYQGG-----------GT 49
           W    RTKWKRQTAVGLELLAEAGN+AAFQRLYGG P  G WPY              G 
Sbjct: 343 WYQNRRTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAGAAAAAAHGP 402

Query: 50  TQPSAADLYYRQAAVAAAAVSTLQKPLAYRLYPGVPAT 87
           T  ++ D+YYRQAA AA     +QKPL Y LY GVP+ 
Sbjct: 403 TPHTSIDIYYRQAAAAA----AMQKPLPYNLYAGVPSV 436

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198468115|ref|XP_002133935.1| GA28287 [Drosophila pseudoobscura pseudoobscura] gi|198146260|gb|EDY72562.1| GA28287 [Drosophila pseudoobscura pseudoobscura]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 62/98 (63%), Gaps = 16/98 (16%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGG-PTYGCWPYQGG-----------GT 49
           W    RTKWKRQTAVGLELLAEAGN+AAFQRLYGG P  G WPY              G 
Sbjct: 419 WYQNRRTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAGAAAAAAHGP 478

Query: 50  TQPSAADLYYRQAAVAAAAVSTLQKPLAYRLYPGVPAT 87
           T  ++ D+YYRQ    AAA + +QKPL Y LY GVP+ 
Sbjct: 479 TPHTSIDIYYRQ----AAAAAAMQKPLPYNLYAGVPSV 512

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195432046|ref|XP_002064037.1| GK19952 [Drosophila willistoni] gi|194160122|gb|EDW75023.1| GK19952 [Drosophila willistoni]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 67/112 (59%), Gaps = 27/112 (24%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGG--PTYGCWPYQGGGTTQ-------P 52
           W    RTKWKRQTAVGLELLAEAGNYAAFQRLYGG  P    WPY     TQ       P
Sbjct: 430 WYQNRRTKWKRQTAVGLELLAEAGNYAAFQRLYGGATPYLSAWPYAAAAATQSPHGGAPP 489

Query: 53  SAADLYYRQAAVAAAAVSTLQKPL----AYRLYPGVPATANASHSLSPPGLA 100
           SA D+YYRQAA AAA    LQKP     AYR+YP          +  PPG+A
Sbjct: 490 SAIDIYYRQAAAAAA----LQKPTLPASAYRMYP----------TSMPPGMA 527

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195393352|ref|XP_002055318.1| GJ18855 [Drosophila virilis] gi|194149828|gb|EDW65519.1| GJ18855 [Drosophila virilis]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/101 (56%), Positives = 63/101 (62%), Gaps = 15/101 (14%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGG-PTYGCWPYQGGGTTQP-------- 52
           W    RTKWKRQTAVGLELLAEAGN+AAFQRLYGG P  G WPY                
Sbjct: 328 WYQNRRTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAGAAAAAHGAP 387

Query: 53  --SAADLYYRQAAVAAAAVSTLQKPLAYRLYPGVPATANAS 91
             S+ D+YYRQAA AAA    +QKPL Y LY GVP+ +  S
Sbjct: 388 PHSSIDIYYRQAAAAAA----MQKPLPYNLYAGVPSVSVGS 424

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195132137|ref|XP_002010500.1| GI15964 [Drosophila mojavensis] gi|193908950|gb|EDW07817.1| GI15964 [Drosophila mojavensis]

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 61/96 (63%), Gaps = 15/96 (15%)

Query: 2   WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGG-PTYGCWPYQGGGTTQP-------- 52
           W    RTKWKRQTAVGLELLAEAGN+AAFQRLYGG P  G WPY                
Sbjct: 328 WYQNRRTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAGAAAAAHGAP 387

Query: 53  --SAADLYYRQAAVAAAAVSTLQKPLAYRLYPGVPA 86
             S+ D+YYRQAA AAA    +QKPL Y LY GVP+
Sbjct: 388 PHSSIDIYYRQAAAAAA----MQKPLPYNLYAGVPS 419

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
FB|FBgn0011758	544	B-H1 "BarH1" [Drosophila melan	0.509	0.148	0.571	4e-20
FB|FBgn0004854	645	B-H2 "BarH2" [Drosophila melan	0.597	0.147	0.495	6.6e-18
MGI|MGI:1859288	327	Barhl1 "BarH-like 1 (Drosophil	0.584	0.284	0.43	2.1e-11
RGD|620648	327	Barhl1 "BarH-like homeobox 1"	0.584	0.284	0.43	2.1e-11
ZFIN|ZDB-GENE-060118-2	323	barhl1b "BarH-like 1b" [Danio	0.566	0.278	0.427	7.2e-11
UNIPROTKB|E2QSL9	327	BARHL1 "Uncharacterized protei	0.566	0.275	0.427	7.5e-11
UNIPROTKB|Q9BZE3	327	BARHL1 "BarH-like 1 homeobox p	0.566	0.275	0.427	7.5e-11
UNIPROTKB|F1S0T9	327	BARHL1 "Uncharacterized protei	0.566	0.275	0.427	7.5e-11
UNIPROTKB|E1B9T6	337	BARHL1 "Uncharacterized protei	0.566	0.267	0.427	8.1e-11
UNIPROTKB|Q9NY43	387	BARHL2 "BarH-like 2 homeobox p	0.597	0.245	0.441	1.1e-10

FB|FBgn0011758 B-H1 "BarH1" [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 4.0e-20, P = 4.0e-20
 Identities = 52/91 (57%), Positives = 58/91 (63%)

Query:     2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY-GCWPYQGG-----GTTQPSAA 55
             W    RTKWKRQTAVGLELLAEAGN+AAFQRLYGG  Y G WPY        G T  +  
Sbjct:   346 WYQNRRTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAAHGATPHTNI 405

Query:    56 DLYYRQXXXXXXXXSTLQKPLAYRLYPGVPA 86
             D+YYRQ        + +QKPL Y LY GVP+
Sbjct:   406 DIYYRQAAAA----AAMQKPLPYNLYAGVPS 432

GO:0008052 "sensory organ boundary specification" evidence=IMP

GO:0008057 "eye pigment granule organization" evidence=IMP

GO:0001751 "compound eye photoreceptor cell differentiation" evidence=IMP

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0007455 "eye-antennal disc morphogenesis" evidence=IMP

GO:0007479 "leg disc proximal/distal pattern formation" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0003677 "DNA binding" evidence=NAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI;IMP

FB|FBgn0004854 B-H2 "BarH2" [Drosophila melanogaster (taxid:7227)]

 Score = 227 (85.0 bits), Expect = 6.6e-18, P = 6.6e-18
 Identities = 52/105 (49%), Positives = 58/105 (55%)

Query:     2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPT-Y-GCWPYQGGGTTQ------PS 53
             W    RTKWKRQTAVGLELLAEAGNYAAFQRLYGG T Y   WPY      Q      PS
Sbjct:   427 WYQNRRTKWKRQTAVGLELLAEAGNYAAFQRLYGGATPYLSAWPYAAAAAAQSPHGATPS 486

Query:    54 AADLYYRQXXXXXXXXSTLQKPLAYRLYPG-VPATANASHSLSPP 97
             A D+YYRQ             P +YR+Y   +P   +     +PP
Sbjct:   487 AIDIYYRQAAAAAAMQKP-SLPASYRMYQSSIPPGMSLPGMPAPP 530

GO:0008052 "sensory organ boundary specification" evidence=IMP

GO:0008057 "eye pigment granule organization" evidence=IMP

GO:0001751 "compound eye photoreceptor cell differentiation" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005634 "nucleus" evidence=IEA;IC;NAS

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0007455 "eye-antennal disc morphogenesis" evidence=IMP

GO:0007479 "leg disc proximal/distal pattern formation" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0003677 "DNA binding" evidence=NAS

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

MGI|MGI:1859288 Barhl1 "BarH-like 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 161 (61.7 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 43/100 (43%), Positives = 52/100 (52%)

Query:     2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQ 61
             W    RTKWKRQTAVGLELLAEAGNY+A QR++  P +  +P        P AA   YR 
Sbjct:   225 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF--YPQSLVSNLDPGAALYLYR- 281

Query:    62 XXXXXXXXSTLQKPLAYR-LYPGVPATANASHSLSP-PGL 99
                       LQ+PL  R L  G+   +     L P PG+
Sbjct:   282 --GPSAPPPALQRPLVPRILIHGLQGASEPPPPLPPLPGV 319

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0001764 "neuron migration" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0030901 "midbrain development" evidence=IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

RGD|620648 Barhl1 "BarH-like homeobox 1" [Rattus norvegicus (taxid:10116)]

 Score = 161 (61.7 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 43/100 (43%), Positives = 52/100 (52%)

Query:     2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQ 61
             W    RTKWKRQTAVGLELLAEAGNY+A QR++  P +  +P        P AA   YR 
Sbjct:   225 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF--YPQSLVSNLDPGAALYLYR- 281

Query:    62 XXXXXXXXSTLQKPLAYR-LYPGVPATANASHSLSP-PGL 99
                       LQ+PL  R L  G+   +     L P PG+
Sbjct:   282 --GPSAPPPALQRPLVPRILIHGLQGASEPPPPLPPLPGV 319

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA;ISO

GO:0001764 "neuron migration" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0007605 "sensory perception of sound" evidence=IEA;ISO

GO:0030901 "midbrain development" evidence=IEA;ISO

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA;ISO

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

ZFIN|ZDB-GENE-060118-2 barhl1b "BarH-like 1b" [Danio rerio (taxid:7955)]

 Score = 156 (60.0 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 41/96 (42%), Positives = 49/96 (51%)

Query:     2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQ 61
             W    RTKWKRQTAVGLELLAEAGNY+A QR++  P +  +P        P AA   YR 
Sbjct:   221 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF--YPQSLVSNLDPGAALYLYR- 277

Query:    62 XXXXXXXXSTLQKPLAYR-LYPGVPATANASHSLSP 96
                       LQ+PL  R L  G+   +     L P
Sbjct:   278 --GPSAPPPALQRPLVPRILLHGLQGASEPPPPLPP 311

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|E2QSL9 BARHL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 7.5e-11, P = 7.5e-11
 Identities = 41/96 (42%), Positives = 49/96 (51%)

Query:     2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQ 61
             W    RTKWKRQTAVGLELLAEAGNY+A QR++  P +  +P        P AA   YR 
Sbjct:   225 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF--YPQSLVSNLDPGAALYLYR- 281

Query:    62 XXXXXXXXSTLQKPLAYR-LYPGVPATANASHSLSP 96
                       LQ+PL  R L  G+   +     L P
Sbjct:   282 --GPSAPPPALQRPLVPRILIHGLQGASEPPPPLPP 315

GO:0005634 "nucleus" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|Q9BZE3 BARHL1 "BarH-like 1 homeobox protein" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 7.5e-11, P = 7.5e-11
 Identities = 41/96 (42%), Positives = 49/96 (51%)

Query:     2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQ 61
             W    RTKWKRQTAVGLELLAEAGNY+A QR++  P +  +P        P AA   YR 
Sbjct:   225 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF--YPQSLVSNLDPGAALYLYR- 281

Query:    62 XXXXXXXXSTLQKPLAYR-LYPGVPATANASHSLSP 96
                       LQ+PL  R L  G+   +     L P
Sbjct:   282 --GPSAPPPALQRPLVPRILIHGLQGASEPPPPLPP 315

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1S0T9 BARHL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 156 (60.0 bits), Expect = 7.5e-11, P = 7.5e-11
 Identities = 41/96 (42%), Positives = 49/96 (51%)

Query:     2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQ 61
             W    RTKWKRQTAVGLELLAEAGNY+A QR++  P +  +P        P AA   YR 
Sbjct:   225 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF--YPQSLVSNLDPGAALYLYR- 281

Query:    62 XXXXXXXXSTLQKPLAYR-LYPGVPATANASHSLSP 96
                       LQ+PL  R L  G+   +     L P
Sbjct:   282 --GPSAPPPALQRPLVPRILIHGLQGASEPPPPLPP 315

GO:0005634 "nucleus" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|E1B9T6 BARHL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 8.1e-11, P = 8.1e-11
 Identities = 41/96 (42%), Positives = 49/96 (51%)

Query:     2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQ 61
             W    RTKWKRQTAVGLELLAEAGNY+A QR++  P +  +P        P AA   YR 
Sbjct:   235 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF--YPQSLVSNLDPGAALYLYR- 291

Query:    62 XXXXXXXXSTLQKPLAYR-LYPGVPATANASHSLSP 96
                       LQ+PL  R L  G+   +     L P
Sbjct:   292 --GPSAPPPALQRPLVPRILIHGLQGASEPPPPLPP 325

GO:0005634 "nucleus" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|Q9NY43 BARHL2 "BarH-like 2 homeobox protein" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 45/102 (44%), Positives = 53/102 (51%)

Query:     2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGG----TTQPSAADL 57
             W    RTKWKRQTAVGLELLAEAGNY+A QR++  P Y   P   G     T   +AA +
Sbjct:   279 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSP-YFYHPSLLGSMDSTTAAAAAAAM 337

Query:    58 YYRQXXXXXXXXSTLQKPLAYR-LYPGV-PATANASHSLSPP 97
             Y             LQ+PL  R L  G+ P    A + LS P
Sbjct:   338 YSSMYRTPPAPHPQLQRPLVPRVLIHGLGPGGQPALNPLSSP 379

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

GO:0001709 "cell fate determination" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IEA

GO:0030516 "regulation of axon extension" evidence=IEA

GO:0045727 "positive regulation of translation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24256	BARH2_DROME	No assigned EC number	0.5824	0.4779	0.1178	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
KOG0488|consensus	309		99.35
KOG0485|consensus	268		98.98
KOG0489|consensus	261		98.3
KOG0844|consensus	408		97.9
KOG0847|consensus	288		97.81
KOG0492|consensus	246		97.46
KOG0842|consensus	307		97.43
KOG0483|consensus	198		97.34
KOG0850|consensus	245		97.15
KOG0494|consensus	332		97.11
KOG0484|consensus	125		97.06
KOG0490|consensus	235		96.5
KOG0848|consensus	317		96.3
KOG2251|consensus	228		95.6
COG5576	156	Homeodomain-containing transcription factor [Trans	94.49
KOG4577|consensus	383		94.27
KOG0849|consensus	354		91.37
KOG0486|consensus	351		89.62
KOG3802|consensus	398		88.35

>KOG0488|consensus

Probab=99.35  E-value=1.5e-13  Score=118.03  Aligned_cols=41  Identities=49%  Similarity=0.654  Sum_probs=33.4

Q ss_pred             CCccccchhhhhhhhhhHHHHHHhCChHHHHhhhcCCCCCCCCCCCC
Q psy5731           1 MWLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGG   47 (159)
Q Consensus         1 tWFQNRRTKWKRQ~avgLEllaeagn~aA~Qrl~~~p~~~~wpY~~~   47 (159)
                      |||||||||||||+++|.|++.+++|+.+      .+.+..+++...
T Consensus       218 tWfQNRRtKWKrq~a~g~~~~~~~~~~~~------~p~~~~~~~~~~  258 (309)
T KOG0488|consen  218 TWFQNRRTKWKRQTAEGGELLYQAGNSSA------LPYLSLQPTAEQ  258 (309)
T ss_pred             HHHhhhhHHHHHHHHhhhccccccccccC------cccccccccccc
Confidence            79999999999999999999999999766      345544555444

>KOG0485|consensus

Probab=98.98  E-value=1.3e-10  Score=99.63  Aligned_cols=23  Identities=43%  Similarity=0.780  Sum_probs=21.3

Q ss_pred             CCccccchhhhhhhhhhHHHHHH
Q psy5731           1 MWLTAVRTKWKRQTAVGLELLAE   23 (159)
Q Consensus         1 tWFQNRRTKWKRQ~avgLEllae   23 (159)
                      |||||||||||||.+++||.++-
T Consensus       150 IWFQNRRnKwKRq~aad~ea~sl  172 (268)
T KOG0485|consen  150 IWFQNRRNKWKRQYAADLEAASL  172 (268)
T ss_pred             hhhhhhhHHHHHHHhhhhhhhhc
Confidence            79999999999999999997655

>KOG0489|consensus

Probab=98.30  E-value=7.4e-08  Score=80.41  Aligned_cols=20  Identities=25%  Similarity=0.685  Sum_probs=17.1

Q ss_pred             CCccccchhhhhhhhhhHHH
Q psy5731           1 MWLTAVRTKWKRQTAVGLEL   20 (159)
Q Consensus         1 tWFQNRRTKWKRQ~avgLEl   20 (159)
                      |||||||+||||....+.+.
T Consensus       205 IWFQNRRMK~Kk~~k~~~~~  224 (261)
T KOG0489|consen  205 IWFQNRRMKWKKENKAKSSQ  224 (261)
T ss_pred             HHHHHHHHHHHHhhcccccc
Confidence            89999999999998766554

>KOG0844|consensus

Probab=97.90  E-value=2.2e-05  Score=70.63  Aligned_cols=19  Identities=32%  Similarity=0.316  Sum_probs=16.1

Q ss_pred             CCccccchhhhhhhhhhHH
Q psy5731           1 MWLTAVRTKWKRQTAVGLE   19 (159)
Q Consensus         1 tWFQNRRTKWKRQ~avgLE   19 (159)
                      +||||||.|.|||..+.-|
T Consensus       227 VWFQNRRMKDKRQRlamaW  245 (408)
T KOG0844|consen  227 VWFQNRRMKDKRQRLAMAW  245 (408)
T ss_pred             hhhhhchhhhhhhhhhccC
Confidence            6999999999999866444

>KOG0847|consensus

Probab=97.81  E-value=4.1e-06  Score=72.62  Aligned_cols=19  Identities=32%  Similarity=0.898  Sum_probs=16.2

Q ss_pred             CCccccchhhhhhhhhhHH
Q psy5731           1 MWLTAVRTKWKRQTAVGLE   19 (159)
Q Consensus         1 tWFQNRRTKWKRQ~avgLE   19 (159)
                      +|||||||||++.-+.++.
T Consensus       213 VWFQNRRTKWRKkhAaEma  231 (288)
T KOG0847|consen  213 VWFQNRRTKWRKKHAAEMA  231 (288)
T ss_pred             HHHhcchhhhhhhhccchh
Confidence            6999999999998876554

>KOG0492|consensus

Probab=97.46  E-value=5.1e-05  Score=65.17  Aligned_cols=25  Identities=36%  Similarity=0.493  Sum_probs=22.5

Q ss_pred             CCccccchhhhhhhhhhHHHHHHhC
Q psy5731           1 MWLTAVRTKWKRQTAVGLELLAEAG   25 (159)
Q Consensus         1 tWFQNRRTKWKRQ~avgLEllaeag   25 (159)
                      |||||||.|=||-..+++|.+..+.
T Consensus       190 IWFQNRRAKaKRlQeae~Ek~kmaa  214 (246)
T KOG0492|consen  190 IWFQNRRAKAKRLQEAELEKLKMAA  214 (246)
T ss_pred             hhhhhhhHHHHHHHHHHHHHhhhhh
Confidence            8999999999999999999886643

>KOG0842|consensus

Probab=97.43  E-value=9e-05  Score=65.11  Aligned_cols=16  Identities=38%  Similarity=0.547  Sum_probs=14.4

Q ss_pred             CCccccchhhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTAV   16 (159)
Q Consensus         1 tWFQNRRTKWKRQ~av   16 (159)
                      |||||||=|=|||...
T Consensus       199 IWFQNrRYK~KR~~~d  214 (307)
T KOG0842|consen  199 IWFQNRRYKTKRQQKD  214 (307)
T ss_pred             eeeecchhhhhhhhhh
Confidence            8999999999999753

>KOG0483|consensus

Probab=97.34  E-value=3.3e-05  Score=63.91  Aligned_cols=14  Identities=29%  Similarity=1.004  Sum_probs=12.3

Q ss_pred             CCccccchhhhhhh
Q psy5731           1 MWLTAVRTKWKRQT   14 (159)
Q Consensus         1 tWFQNRRTKWKRQ~   14 (159)
                      |||||||.+||+..
T Consensus        96 vWFQNRRARwK~kq  109 (198)
T KOG0483|consen   96 VWFQNRRARWKTKQ  109 (198)
T ss_pred             HHHhhccccccchh
Confidence            79999999999753

>KOG0850|consensus

Probab=97.15  E-value=0.00012  Score=62.94  Aligned_cols=15  Identities=27%  Similarity=0.742  Sum_probs=14.2

Q ss_pred             CCccccchhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTA   15 (159)
Q Consensus         1 tWFQNRRTKWKRQ~a   15 (159)
                      |||||||-|.|++..
T Consensus       168 IWFQNrRSK~KKl~k  182 (245)
T KOG0850|consen  168 IWFQNRRSKFKKLKK  182 (245)
T ss_pred             hhhhhhHHHHHHHHh
Confidence            899999999999986

>KOG0494|consensus

Probab=97.11  E-value=0.00014  Score=64.41  Aligned_cols=29  Identities=34%  Similarity=0.795  Sum_probs=20.2

Q ss_pred             CCccccchhhhhhhhh--hHHHHHHhCChHH
Q psy5731           1 MWLTAVRTKWKRQTAV--GLELLAEAGNYAA   29 (159)
Q Consensus         1 tWFQNRRTKWKRQ~av--gLEllaeagn~aA   29 (159)
                      +||||||.||+|-...  +--+++|.|-|-|
T Consensus       187 VWfQNRRAKWRk~Ek~wg~sT~maeyglyGa  217 (332)
T KOG0494|consen  187 VWFQNRRAKWRKTEKRWGGSTIMAEYGLYGA  217 (332)
T ss_pred             HHhhhhhHHhhhhhhhcCcchhhhhhcccch
Confidence            6999999999886543  3445667664433

>KOG0484|consensus

Probab=97.06  E-value=0.00016  Score=56.86  Aligned_cols=25  Identities=20%  Similarity=0.554  Sum_probs=20.5

Q ss_pred             CCccccchhhhhhhhhhHHHHHHhC
Q psy5731           1 MWLTAVRTKWKRQTAVGLELLAEAG   25 (159)
Q Consensus         1 tWFQNRRTKWKRQ~avgLEllaeag   25 (159)
                      +||||||.|.++|.-...-.+++..
T Consensus        63 VWFQNRRAKfRKQEr~a~~~~~~~~   87 (125)
T KOG0484|consen   63 VWFQNRRAKFRKQERAAIAKMAAKS   87 (125)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhhhc
Confidence            5999999999999987777666533

>KOG0490|consensus

Probab=96.50  E-value=0.00077  Score=52.14  Aligned_cols=15  Identities=20%  Similarity=0.561  Sum_probs=13.8

Q ss_pred             CCccccchhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTA   15 (159)
Q Consensus         1 tWFQNRRTKWKRQ~a   15 (159)
                      +||||||.||++|..
T Consensus       106 vwFqnrrak~r~~~~  120 (235)
T KOG0490|consen  106 VWFQNRRAKDRKEER  120 (235)
T ss_pred             hhhhhhcHhhhhhhc
Confidence            699999999999984

>KOG0848|consensus

Probab=96.30  E-value=0.0016  Score=57.77  Aligned_cols=18  Identities=17%  Similarity=0.409  Sum_probs=16.6

Q ss_pred             CCccccchhhhhhhhhhH
Q psy5731           1 MWLTAVRTKWKRQTAVGL   18 (159)
Q Consensus         1 tWFQNRRTKWKRQ~avgL   18 (159)
                      |||||||.|-+|+..-++
T Consensus       245 IWFQNRRAKERK~nKKk~  262 (317)
T KOG0848|consen  245 IWFQNRRAKERKDNKKKR  262 (317)
T ss_pred             HhhhhhhHHHHHHHHHHH
Confidence            899999999999998775

>KOG2251|consensus

Probab=95.60  E-value=0.004  Score=53.38  Aligned_cols=16  Identities=31%  Similarity=0.657  Sum_probs=14.5

Q ss_pred             CCccccchhhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTAV   16 (159)
Q Consensus         1 tWFQNRRTKWKRQ~av   16 (159)
                      +||-|||.|||||..-
T Consensus        83 VWFKNRRAK~r~qq~q   98 (228)
T KOG2251|consen   83 VWFKNRRAKCRRQQQQ   98 (228)
T ss_pred             hhhccccchhhHhhhh
Confidence            6999999999999864

>COG5576 Homeodomain-containing transcription factor [Transcription]

Probab=94.49  E-value=0.011  Score=47.30  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=18.3

Q ss_pred             CCccccchhhhhhhhhhHHHH
Q psy5731           1 MWLTAVRTKWKRQTAVGLELL   21 (159)
Q Consensus         1 tWFQNRRTKWKRQ~avgLEll   21 (159)
                      |||||||.|=|++...+.+..
T Consensus        97 IWFQNkR~~~k~~~~~~~~~~  117 (156)
T COG5576          97 IWFQNKRAKEKKKRSGKVEQR  117 (156)
T ss_pred             hhhchHHHHHHHhcccchhcc
Confidence            799999999999998877754

>KOG4577|consensus

Probab=94.27  E-value=0.012  Score=53.04  Aligned_cols=14  Identities=36%  Similarity=0.622  Sum_probs=12.3

Q ss_pred             CCccccchhhhhhh
Q psy5731           1 MWLTAVRTKWKRQT   14 (159)
Q Consensus         1 tWFQNRRTKWKRQ~   14 (159)
                      +||||||.|=||-.
T Consensus       213 VWFQNRRAKEKRLK  226 (383)
T KOG4577|consen  213 VWFQNRRAKEKRLK  226 (383)
T ss_pred             hhhhhhhHHHHhhh
Confidence            69999999998864

>KOG0849|consensus

Probab=91.37  E-value=0.047  Score=48.08  Aligned_cols=14  Identities=43%  Similarity=1.142  Sum_probs=13.4

Q ss_pred             CCccccchhhhhhh
Q psy5731           1 MWLTAVRTKWKRQT   14 (159)
Q Consensus         1 tWFQNRRTKWKRQ~   14 (159)
                      +||||||.||+||.
T Consensus       222 vwf~nrra~~rr~~  235 (354)
T KOG0849|consen  222 VWFQNRRAKWRRQH  235 (354)
T ss_pred             HHHhhhhhhhhhcc
Confidence            69999999999998

>KOG0486|consensus

Probab=89.62  E-value=0.19  Score=45.61  Aligned_cols=15  Identities=27%  Similarity=0.988  Sum_probs=12.2

Q ss_pred             CCccccchhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTA   15 (159)
Q Consensus         1 tWFQNRRTKWKRQ~a   15 (159)
                      +||-|||.||++-.-
T Consensus       158 vwfknrrakwrkrEr  172 (351)
T KOG0486|consen  158 VWFKNRRAKWRKRER  172 (351)
T ss_pred             hhcccchhhhhhhhh
Confidence            699999999976443

>KOG3802|consensus

Probab=88.35  E-value=0.12  Score=47.56  Aligned_cols=15  Identities=40%  Similarity=0.610  Sum_probs=13.8

Q ss_pred             CCccccchhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTA   15 (159)
Q Consensus         1 tWFQNRRTKWKRQ~a   15 (159)
                      +||+|||-|=||-+.
T Consensus       340 VWFCNRRQkeKR~~~  354 (398)
T KOG3802|consen  340 VWFCNRRQKEKRITP  354 (398)
T ss_pred             EEeeccccccccCCC
Confidence            699999999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
2nzz_A	37	Penetratin conjugated GAS (374-394) peptide; confo	98.72
3a01_A	93	Homeodomain-containing protein; homeodomain, prote	97.97
2cue_A	80	Paired box protein PAX6; homeobox domain, transcri	97.8
1uhs_A	72	HOP, homeodomain only protein; structural genomics	97.75
2hi3_A	73	Homeodomain-only protein; transcription; NMR {Mus	97.71
2dmq_A	80	LIM/homeobox protein LHX9; homeobox domain, three	97.67
2dms_A	80	Homeobox protein OTX2; homeobox domain, three heli	97.67
2ecb_A	89	Zinc fingers and homeoboxes protein 1; homeobox do	97.52
1b72_B	87	Protein (PBX1); homeodomain, DNA, complex, DNA-bin	97.42
2dmp_A	89	Zinc fingers and homeoboxes protein 2; homeobox do	97.37
1le8_B	83	Mating-type protein alpha-2; matalpha2, isothermal	97.3
2ecc_A	76	Homeobox and leucine zipper protein homez; homeobo	97.23
2dmn_A	83	Homeobox protein TGIF2LX; TGFB-induced factor 2-li	97.05
2lk2_A	89	Homeobox protein TGIF1; NESG, structural genomics,	95.64

>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A

Probab=98.72  E-value=1.2e-09  Score=68.86  Aligned_cols=16  Identities=31%  Similarity=0.850  Sum_probs=14.6

Q ss_pred             CCccccchhhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTAV   16 (159)
Q Consensus         1 tWFQNRRTKWKRQ~av   16 (159)
                      |||||||+||||+...
T Consensus         5 IWFQNRRaK~Kk~~~~   20 (37)
T 2nzz_A            5 IWFQNRRMKWKKRVFN   20 (37)
T ss_dssp             TTTTCSHHHHTSSHHH
T ss_pred             eccHHHHHHHHHHhHH
Confidence            8999999999999864

>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}

Probab=97.97  E-value=4.6e-07  Score=63.77  Aligned_cols=20  Identities=50%  Similarity=0.840  Sum_probs=15.5

Q ss_pred             CCccccchhhhhhhhhhHHH
Q psy5731           1 MWLTAVRTKWKRQTAVGLEL   20 (159)
Q Consensus         1 tWFQNRRTKWKRQ~avgLEl   20 (159)
                      +||||||.||||+....-|.
T Consensus        63 vWFqNRR~k~kr~~~~~~~~   82 (93)
T 3a01_A           63 TWFQNRRTKWRRQTAEEREA   82 (93)
T ss_dssp             HHHHHHHHHHHHHHTCC---
T ss_pred             cccHhhhhhhhhhhHHHHHH
Confidence            69999999999998766553

>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=97.80  E-value=1.8e-06  Score=58.66  Aligned_cols=16  Identities=31%  Similarity=1.043  Sum_probs=14.3

Q ss_pred             CCccccchhhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTAV   16 (159)
Q Consensus         1 tWFQNRRTKWKRQ~av   16 (159)
                      +||||||.||||+...
T Consensus        53 vWFqNRR~k~kk~~~~   68 (80)
T 2cue_A           53 VWFSNRRAKWRREEKL   68 (80)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            6999999999999854

>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1

Probab=97.75  E-value=1.9e-06  Score=57.41  Aligned_cols=15  Identities=20%  Similarity=0.767  Sum_probs=13.6

Q ss_pred             CCccccchhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTA   15 (159)
Q Consensus         1 tWFQNRRTKWKRQ~a   15 (159)
                      +||||||.||||+..
T Consensus        48 ~WFqNRR~k~rk~~~   62 (72)
T 1uhs_A           48 KWFKQRLAEWRRSEG   62 (72)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHhHHHHHHHhhhcc
Confidence            699999999999874

>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1

Probab=97.71  E-value=2.4e-06  Score=57.18  Aligned_cols=15  Identities=20%  Similarity=0.767  Sum_probs=13.6

Q ss_pred             CCccccchhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTA   15 (159)
Q Consensus         1 tWFQNRRTKWKRQ~a   15 (159)
                      +||||||.||||+..
T Consensus        49 ~WFqNRR~k~rk~~~   63 (73)
T 2hi3_A           49 KWFKQRLAEWRRSEG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcc
Confidence            699999999999874

>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.67  E-value=3.2e-06  Score=57.00  Aligned_cols=15  Identities=27%  Similarity=0.784  Sum_probs=13.4

Q ss_pred             CCccccchhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTA   15 (159)
Q Consensus         1 tWFQNRRTKWKRQ~a   15 (159)
                      +||||||.||||+..
T Consensus        53 ~WFqNrR~k~kk~~~   67 (80)
T 2dmq_A           53 VWFQNARAKFRRNLL   67 (80)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHH
Confidence            699999999999863

>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.67  E-value=2.9e-06  Score=57.52  Aligned_cols=15  Identities=27%  Similarity=0.662  Sum_probs=13.6

Q ss_pred             CCccccchhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTA   15 (159)
Q Consensus         1 tWFQNRRTKWKRQ~a   15 (159)
                      +||||||.||||+..
T Consensus        53 ~WFqNRR~k~rk~~~   67 (80)
T 2dms_A           53 VWFKNRRAKCRQQQQ   67 (80)
T ss_dssp             HHHHHHHTHHHHTTC
T ss_pred             hhhHHHhHHhhHHHH
Confidence            699999999999874

>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=97.52  E-value=5.2e-06  Score=59.37  Aligned_cols=15  Identities=13%  Similarity=0.324  Sum_probs=13.0

Q ss_pred             CCccccchhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTA   15 (159)
Q Consensus         1 tWFQNRRTKWKRQ~a   15 (159)
                      |||||||+|||++..
T Consensus        57 vWFqNRR~k~rk~~~   71 (89)
T 2ecb_A           57 AWFTEKKKSKALKEE   71 (89)
T ss_dssp             HHHHHHHHHHHSCCS
T ss_pred             ecccccchHHHHHHH
Confidence            699999999998653

>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P

Probab=97.42  E-value=1.3e-05  Score=54.72  Aligned_cols=19  Identities=21%  Similarity=0.412  Sum_probs=15.8

Q ss_pred             CCccccchhhhhhhhhhHH
Q psy5731           1 MWLTAVRTKWKRQTAVGLE   19 (159)
Q Consensus         1 tWFQNRRTKWKRQ~avgLE   19 (159)
                      +||||||.||||+....-+
T Consensus        50 ~WFqNrR~r~kk~~~~~~~   68 (87)
T 1b72_B           50 NWFGNKRIRYKKNIGKFQE   68 (87)
T ss_dssp             HHHHHHHHHHHHCGGGGHH
T ss_pred             HHHHHHHHHhhhccccccc
Confidence            5999999999999865444

>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.37  E-value=1.1e-05  Score=56.44  Aligned_cols=19  Identities=16%  Similarity=0.316  Sum_probs=15.6

Q ss_pred             CCccccchhhhhhhhhhHH
Q psy5731           1 MWLTAVRTKWKRQTAVGLE   19 (159)
Q Consensus         1 tWFQNRRTKWKRQ~avgLE   19 (159)
                      |||||||.|||++.....+
T Consensus        59 vWFqNRR~k~r~~~~~~~~   77 (89)
T 2dmp_A           59 SWFSERRKLRDSMEQAVLD   77 (89)
T ss_dssp             HHHHHHHHHHHTSCSCCCC
T ss_pred             HhhHhHHHHHHHHhHhhhc
Confidence            6999999999998865433

>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*

Probab=97.30  E-value=1.3e-05  Score=54.96  Aligned_cols=15  Identities=40%  Similarity=0.486  Sum_probs=13.4

Q ss_pred             CCccccchhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTA   15 (159)
Q Consensus         1 tWFQNRRTKWKRQ~a   15 (159)
                      +||||||.||||+..
T Consensus        51 ~WFqNrR~r~kk~~~   65 (83)
T 1le8_B           51 NWVAARRAKEKTITI   65 (83)
T ss_dssp             HHHHHHHHHHTTSCC
T ss_pred             cccHHHHcccccccc
Confidence            599999999999864

>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=97.23  E-value=1.4e-05  Score=56.14  Aligned_cols=19  Identities=16%  Similarity=0.244  Sum_probs=16.0

Q ss_pred             CCccccchhhhhhhhhhHH
Q psy5731           1 MWLTAVRTKWKRQTAVGLE   19 (159)
Q Consensus         1 tWFQNRRTKWKRQ~avgLE   19 (159)
                      +||||||.|||++.-.-+|
T Consensus        49 vWFqNrR~k~Kk~~l~w~~   67 (76)
T 2ecc_A           49 QWFGDTRYALKHGQLKWFR   67 (76)
T ss_dssp             HHHHHHHHHHHHTCCSSTT
T ss_pred             HHhHhhHHHHHHHHHHHHH
Confidence            6999999999999765555

>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}

Probab=97.05  E-value=4.6e-05  Score=52.47  Aligned_cols=15  Identities=13%  Similarity=0.328  Sum_probs=13.4

Q ss_pred             CCccccchhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTA   15 (159)
Q Consensus         1 tWFQNRRTKWKRQ~a   15 (159)
                      +||||||.|||++..
T Consensus        56 ~WFqNrR~r~k~~~~   70 (83)
T 2dmn_A           56 NWFINARRRILPDML   70 (83)
T ss_dssp             HHHHHHHHHTHHHHT
T ss_pred             HHhhhhHhhhcHHHH
Confidence            699999999999864

>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}

Probab=95.64  E-value=0.0011  Score=48.00  Aligned_cols=14  Identities=14%  Similarity=0.406  Sum_probs=12.7

Q ss_pred             CCccccchhhhhhh
Q psy5731           1 MWLTAVRTKWKRQT   14 (159)
Q Consensus         1 tWFQNRRTKWKRQ~   14 (159)
                      +||||||.|||++.
T Consensus        54 ~WF~NrR~R~kk~~   67 (89)
T 2lk2_A           54 NWFINARRRLLPDM   67 (89)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHH
Confidence            59999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1uhsa_	72	Homeodomain-only protein, Hop {Mouse (Mus musculus	97.71
d2ecca1	76	Homeobox-leucine zipper protein Homez {Human (Homo	96.51
d2ecba1	76	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	96.24

>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeodomain-only protein, Hop
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=1.1e-06  Score=59.23  Aligned_cols=15  Identities=20%  Similarity=0.767  Sum_probs=13.4

Q ss_pred             CCccccchhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTA   15 (159)
Q Consensus         1 tWFQNRRTKWKRQ~a   15 (159)
                      |||||||.||||+..
T Consensus        48 vWFqNrRak~rk~~~   62 (72)
T d1uhsa_          48 KWFKQRLAEWRRSEG   62 (72)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhccC
Confidence            699999999999863

>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox-leucine zipper protein Homez
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=9.3e-05  Score=49.12  Aligned_cols=15  Identities=20%  Similarity=0.381  Sum_probs=12.9

Q ss_pred             CCccccchhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTA   15 (159)
Q Consensus         1 tWFQNRRTKWKRQ~a   15 (159)
                      +||||||.|||+...
T Consensus        49 ~WF~NrR~k~k~~~~   63 (76)
T d2ecca1          49 QWFGDTRYALKHGQL   63 (76)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhchH
Confidence            599999999998653

>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Zinc fingers and homeoboxes protein 1, ZHX1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.00013  Score=48.51  Aligned_cols=15  Identities=13%  Similarity=0.324  Sum_probs=12.8

Q ss_pred             CCccccchhhhhhhh
Q psy5731           1 MWLTAVRTKWKRQTA   15 (159)
Q Consensus         1 tWFQNRRTKWKRQ~a   15 (159)
                      +||||||.|.|++..
T Consensus        50 ~WFqNrR~r~k~~~~   64 (76)
T d2ecba1          50 AWFTEKKKSKALKEE   64 (76)
T ss_dssp             HHHHHHHHHHHSCCS
T ss_pred             HhHHHHHHHHHHHhH
Confidence            699999999988663