Psyllid ID: psy5757

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MNLVKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGSY
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHcccccccccEEEEEEccccccEEEEEEEcccccccccccccccccccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccHHHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHccHHHHHcccEEEEEcccccccEEEEEEcccccccccccccHHHHccccEEEEEccccccccc
Coil and Loop (DISEMBL)
MNLVKIGAAIGGISAILTYLSIIQphlnenskvleigsgsgYLTNMISELMNSTgqvigiehvpQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKfdrydflphapaeswmnipvcinytatmpegsy
Flexible Loop (DISEMBL)
MNLVKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHapaeswmniPVCINYTATMPEGSY
Low Complexity Region (SEG)
MNLVKigaaiggisaiLTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGSY
Disordered region (IsUnstruct)
**LVKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTA*******
Disordered Region (DISOPRED)
*NLVKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPE***
Disordered Region (DISEMBL)
MNLVKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGSY
Disordered Region (DISPRO)
MNLVKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATM*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLVKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q92047	228	Protein-L-isoaspartate(D-	no	N/A	0.510	0.311	0.422	6e-11
Q5F3N1	228	Protein-L-isoaspartate(D-	no	N/A	0.510	0.311	0.394	1e-10
P15246	227	Protein-L-isoaspartate(D-	yes	N/A	0.510	0.312	0.394	2e-10
Q5RA89	227	Protein-L-isoaspartate(D-	no	N/A	0.510	0.312	0.394	3e-10
Q4R5H0	227	Protein-L-isoaspartate(D-	N/A	N/A	0.510	0.312	0.394	3e-10
P22061	227	Protein-L-isoaspartate(D-	no	N/A	0.510	0.312	0.380	4e-10
P23506	227	Protein-L-isoaspartate(D-	no	N/A	0.510	0.312	0.380	8e-10
P80895	227	Protein-L-isoaspartate(D-	yes	N/A	0.510	0.312	0.380	1e-09
P22062	227	Protein-L-isoaspartate(D-	yes	N/A	0.510	0.312	0.380	1e-09
Q42539	230	Protein-L-isoaspartate O-	yes	N/A	0.431	0.260	0.433	3e-09

>sp|Q92047|PIMT_DANRE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Danio rerio GN=pcmt PE=2 SV=3

 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 46/71 (64%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L ++  HL E +K L++GSGSG L+   S ++  TG+VIGI+H+ +LV  SI N+   + 
Sbjct: 69  LELLHDHLYEGAKALDVGSGSGILSVCFSRMVGPTGKVIGIDHIKELVEDSIANVKKDDP 128

Query: 80  RLLTDGHIKFV 90
            L+T G IK +
Sbjct: 129 SLITSGRIKLI 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
Danio rerio (taxid: 7955)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 7EC: 7

>sp|Q5F3N1|PIMT_CHICK Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Gallus gallus GN=PCMT1 PE=2 SV=3

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 46/71 (64%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L ++   L+E +K L++GSGSG LT   S ++   GQV+GI+H+ +LV+ SI N+   + 
Sbjct: 69  LELLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKKDDP 128

Query: 80  RLLTDGHIKFV 90
            LL+ G +K +
Sbjct: 129 TLLSSGRVKLI 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P15246|PIMT_BOVIN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Bos taurus GN=PCMT1 PE=1 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 47/71 (66%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L ++   LNE +K L++GSGSG LT   + ++  +G+VIGI+H+ +LV+ SI N+   + 
Sbjct: 69  LELLFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDP 128

Query: 80  RLLTDGHIKFV 90
            LL+ G ++ V
Sbjct: 129 MLLSSGRVQLV 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q5RA89|PIMT_PONAB Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Pongo abelii GN=PCMT1 PE=2 SV=3

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 47/71 (66%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L ++   L+E +K L++GSGSG LT   + ++  TG+VIGI+H+ +LV+ SI N+   + 
Sbjct: 69  LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNVRKDDP 128

Query: 80  RLLTDGHIKFV 90
            LL+ G ++ V
Sbjct: 129 TLLSSGRVQLV 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q4R5H0|PIMT_MACFA Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Macaca fascicularis GN=PCMT1 PE=2 SV=3

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 47/71 (66%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L ++   L+E +K L++GSGSG LT   + ++  TG+VIGI+H+ +LV+ SI N+   + 
Sbjct: 69  LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSINNVRKDDP 128

Query: 80  RLLTDGHIKFV 90
            LL+ G ++ V
Sbjct: 129 TLLSSGRVQLV 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P22061|PIMT_HUMAN Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Homo sapiens GN=PCMT1 PE=1 SV=4

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 47/71 (66%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L ++   L+E +K L++GSGSG LT   + ++  TG+VIGI+H+ +LV+ S+ N+   + 
Sbjct: 69  LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP 128

Query: 80  RLLTDGHIKFV 90
            LL+ G ++ V
Sbjct: 129 TLLSSGRVQLV 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P23506|PIMT_MOUSE Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Mus musculus GN=Pcmt1 PE=1 SV=3

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 48/71 (67%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L ++   L+E +K L++GSGSG LT   + ++ ++G+VIGI+H+ +LV+ SI N+   + 
Sbjct: 69  LELLFDQLHEGAKALDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITNVKKDDP 128

Query: 80  RLLTDGHIKFV 90
            LL+ G ++ V
Sbjct: 129 MLLSSGRVRLV 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P80895|PIMT_PIG Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 47/71 (66%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L ++   L+E +K L++GSGSG LT   + ++  +G+VIGI+H+ +LV+ SI N+   + 
Sbjct: 69  LELLFDQLHEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDP 128

Query: 80  RLLTDGHIKFV 90
            LL+ G ++ V
Sbjct: 129 MLLSSGRVQLV 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|P22062|PIMT_RAT Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Rattus norvegicus GN=Pcmt1 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 47/71 (66%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L ++   L+E +K L++GSGSG LT   + ++  +G+VIGI+H+ +LV+ SI N+   + 
Sbjct: 69  LELLFDQLHEGAKALDVGSGSGILTACFARMVGHSGKVIGIDHIKELVDDSITNVKKDDP 128

Query: 80  RLLTDGHIKFV 90
            LL+ G ++ V
Sbjct: 129 MLLSSGRVRLV 139

Catalyzes the methyl esterification of L-isoaspartyl and D-aspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. Acts on microtubule-associated protein 2, calreticulin, clathrin light chains a and b, Ubiquitin carboxyl-terminal hydrolase isozyme L1, phosphatidylethanolamine-binding protein 1, stathmin, beta-synuclein and alpha-synuclein.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q42539|PIMT_ARATH Protein-L-isoaspartate O-methyltransferase OS=Arabidopsis thaliana GN=PCM PE=2 SV=3

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 43/60 (71%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L +++ HL    +VL++GSG+GYLT   + ++ + G+ IG+EH+P+LV SS++NI  S A
Sbjct: 74  LQLLEKHLKPGMRVLDVGSGTGYLTACFAVMVGTEGRAIGVEHIPELVASSVKNIEASAA 133

Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
339239031	290	protein-L-isoaspartate(D-aspartate) O-me	0.510	0.244	0.436	6e-12
339260242	190	protein-L-isoaspartate(D-aspartate) O-me	0.510	0.373	0.436	6e-12
324511867	293	Protein-L-isoaspartate(D-aspartate) O-me	0.525	0.249	0.465	3e-11
213982893	169	uncharacterized protein LOC100216173 [Xe	0.510	0.420	0.436	2e-10
147904060	228	protein-L-isoaspartate (D-aspartate) O-m	0.510	0.311	0.450	3e-10
326919840	248	PREDICTED: protein-L-isoaspartate(D-aspa	0.510	0.286	0.408	3e-10
390345040	296	PREDICTED: protein-L-isoaspartate(D-aspa	0.510	0.239	0.422	4e-10
332028227	261	Protein-L-isoaspartate(D-aspartate) O-me	0.510	0.272	0.436	5e-10
307201189	232	Protein-L-isoaspartate(D-aspartate) O-me	0.510	0.306	0.422	9e-10
318102097	249	l-isoaspartate(d-aspartate) o-methyltran	0.510	0.285	0.408	1e-09

>gi|339239031|ref|XP_003381070.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Trichinella spiralis] gi|316975942|gb|EFV59314.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Trichinella spiralis]

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 51/71 (71%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L +++ HL E ++ L++GSGSGYLT   + ++ ++G+ +GIEH+PQLV  SIQN+ + N 
Sbjct: 127 LEMLKDHLTEGNRALDVGSGSGYLTACFAIMLGNSGKAVGIEHIPQLVEKSIQNVRNGNP 186

Query: 80  RLLTDGHIKFV 90
            LL+ G +K +
Sbjct: 187 ELLSSGRVKLI 197

Source: Trichinella spiralis

Species: Trichinella spiralis

Genus: Trichinella

Family: Trichinellidae

Order: Trichocephalida

Class: Enoplea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|339260242|ref|XP_003368504.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Trichinella spiralis] gi|316963695|gb|EFV49180.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Trichinella spiralis]

 Score = 75.5 bits (184), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 51/71 (71%)

Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
          L +++ HL E ++ L++GSGSGYLT   + ++ ++G+ +GIEH+PQLV  SIQN+ + N 
Sbjct: 22 LEMLKDHLTEGNRALDVGSGSGYLTACFAIMLGNSGKAVGIEHIPQLVEKSIQNVRNGNP 81

Query: 80 RLLTDGHIKFV 90
           LL+ G +K +
Sbjct: 82 ELLSSGRVKLI 92

Source: Trichinella spiralis

Species: Trichinella spiralis

Genus: Trichinella

Family: Trichinellidae

Order: Trichocephalida

Class: Enoplea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|324511867|gb|ADY44933.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ascaris suum]

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 51/73 (69%)

Query: 18  TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHS 77
           T L +++ HL E  K L++GSGSGYLT  ++ ++  +G+VIGIEH+ +LVN SI N+   
Sbjct: 129 TALELLKDHLKEGDKALDVGSGSGYLTACMAIMVGKSGKVIGIEHISELVNDSIANVEKH 188

Query: 78  NARLLTDGHIKFV 90
           +A L++ G I FV
Sbjct: 189 HADLISSGRILFV 201

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|213982893|ref|NP_001135614.1| uncharacterized protein LOC100216173 [Xenopus (Silurana) tropicalis] gi|197246545|gb|AAI68437.1| Unknown (protein for MGC:135713) [Xenopus (Silurana) tropicalis]

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 49/71 (69%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L +++  L E +K L++GSGSGYLT   + ++  TG+V+GIEH+  LV  ++QN+   + 
Sbjct: 69  LELLEDKLVEGAKALDVGSGSGYLTACFARMVGLTGKVVGIEHINHLVKDAVQNVKQDDP 128

Query: 80  RLLTDGHIKFV 90
            LL++G IKFV
Sbjct: 129 ALLSNGRIKFV 139

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|147904060|ref|NP_001080886.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 [Xenopus laevis] gi|33585968|gb|AAH56106.1| Pcmt1-prov protein [Xenopus laevis]

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 49/71 (69%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L +++  L E +K L++GSGSGYLT   + ++  TG+V+GIEH+  LV+ +IQN+   + 
Sbjct: 69  LELLEDKLIEGAKALDVGSGSGYLTACFARMVGLTGKVVGIEHINHLVHDAIQNVKQDDP 128

Query: 80  RLLTDGHIKFV 90
            LL+ G IKFV
Sbjct: 129 TLLSSGRIKFV 139

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326919840|ref|XP_003206185.1| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Meleagris gallopavo] gi|363734030|ref|XP_420939.3| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase [Gallus gallus]

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 48/71 (67%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L +++  L E +K L++GSGSGYLT   + ++  TG+ +G+EH+ +LVN SI+N+   + 
Sbjct: 89  LELLKDQLVEGAKALDVGSGSGYLTACFARMVGPTGKAVGVEHIKELVNESIRNVKEDDP 148

Query: 80  RLLTDGHIKFV 90
            LL+ G +K V
Sbjct: 149 TLLSSGRVKLV 159

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390345040|ref|XP_786523.3| PREDICTED: protein-L-isoaspartate(D-aspartate) O-methyltransferase-like [Strongylocentrotus purpuratus]

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 51/71 (71%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L +++ HL+E    L++GSGSGYLT+ ++ ++ S+G+V+GI+H+ +LV+ S +NI   N 
Sbjct: 137 LELLKDHLSEGKAALDVGSGSGYLTSCMAIMVGSSGKVVGIDHIKELVDKSRKNIEKDNP 196

Query: 80  RLLTDGHIKFV 90
            LLT G I+ +
Sbjct: 197 DLLTSGRIQLI 207

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|332028227|gb|EGI68275.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Acromyrmex echinatior]

 Score = 69.3 bits (168), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 48/71 (67%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           LSI+   L + +K L++GSGSGYL+  ++ ++ S G+VIGIEH+P+L+  S +N+   N 
Sbjct: 102 LSILSDQLFDGAKALDVGSGSGYLSACMAFMVGSGGRVIGIEHIPELIEISTRNVREDNP 161

Query: 80  RLLTDGHIKFV 90
             L +  IKFV
Sbjct: 162 HFLKEDRIKFV 172

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201189|gb|EFN81095.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Harpegnathos saltator]

 Score = 68.6 bits (166), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 48/71 (67%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           LSI+   L + +K L++GSGSGYL+  ++ ++ S G+VIGIEH+P+L+  S +N+     
Sbjct: 70  LSILSDQLVDGAKALDVGSGSGYLSACMAFMVGSRGRVIGIEHIPELIEISTRNVREDCP 129

Query: 80  RLLTDGHIKFV 90
             L +G I+FV
Sbjct: 130 HFLKEGRIRFV 140

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|318102097|ref|NP_001188104.1| l-isoaspartate(d-aspartate) o-methyltransferase precursor [Ictalurus punctatus] gi|308322677|gb|ADO28476.1| l-isoaspartate(d-aspartate) o-methyltransferase [Ictalurus punctatus]

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 46/71 (64%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L I+   L E +  L++GSGSGYLT   + ++  TG+V+GI+H+ +LV +S++N+     
Sbjct: 90  LEILSEQLTEGASALDVGSGSGYLTACFARMVGPTGKVVGIDHIAELVQASVKNVQADEL 149

Query: 80  RLLTDGHIKFV 90
            LLT G +K V
Sbjct: 150 ELLTSGRVKLV 160

Source: Ictalurus punctatus

Species: Ictalurus punctatus

Genus: Ictalurus

Family: Ictaluridae

Order: Siluriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
UNIPROTKB|E1BXJ0	228	LOC423008 "Protein-L-isoaspart	0.510	0.311	0.408	1.2e-12
ZFIN|ZDB-GENE-040426-1738	249	pcmtl "l-isoaspartyl protein c	0.510	0.285	0.408	6.4e-12
ZFIN|ZDB-GENE-990415-134	266	pcmt "l-isoaspartyl protein ca	0.510	0.266	0.422	6.9e-12
UNIPROTKB|F1N9Y6	150	PCMT1 "Protein-L-isoaspartate	0.510	0.473	0.394	1.3e-11
UNIPROTKB|F1NJV4	197	PCMT1 "Protein-L-isoaspartate	0.510	0.360	0.394	1.3e-11
UNIPROTKB|Q5F3N1	228	PCMT1 "Protein-L-isoaspartate(	0.510	0.311	0.394	1.3e-11
UNIPROTKB|G3MZZ6	228	PCMT1 "Protein-L-isoaspartate	0.510	0.311	0.394	4.5e-11
UNIPROTKB|P15246	227	PCMT1 "Protein-L-isoaspartate(	0.510	0.312	0.394	4.5e-11
UNIPROTKB|B7Z972	192	PCMT1 "Protein-L-isoaspartate	0.510	0.369	0.380	7.4e-11
UNIPROTKB|P22061	227	PCMT1 "Protein-L-isoaspartate(	0.510	0.312	0.380	7.4e-11

UNIPROTKB|E1BXJ0 LOC423008 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 29/71 (40%), Positives = 48/71 (67%)

Query:    20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
             L +++  L E +K L++GSGSGYLT   + ++  TG+ +G+EH+ +LVN SI+N+   + 
Sbjct:    69 LELLKDQLVEGAKALDVGSGSGYLTACFARMVGPTGKAVGVEHIKELVNESIRNVKEDDP 128

Query:    80 RLLTDGHIKFV 90
              LL+ G +K V
Sbjct:   129 TLLSSGRVKLV 139

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040426-1738 pcmtl "l-isoaspartyl protein carboxyl methyltransferase, like" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 29/71 (40%), Positives = 46/71 (64%)

Query:    20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
             L ++   L E +  L++GSGSGYLT   + ++  +G+V+GI+H+ QLV SS++N+   + 
Sbjct:    90 LEVLSDKLTEGASALDVGSGSGYLTACFARMVGPSGKVVGIDHIDQLVQSSVKNVQADDP 149

Query:    80 RLLTDGHIKFV 90
              LL  G IK V
Sbjct:   150 ELLATGRIKLV 160

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

ZFIN|ZDB-GENE-990415-134 pcmt "l-isoaspartyl protein carboxyl methyltransferase" [Danio rerio (taxid:7955)]

 Score = 162 (62.1 bits), Expect = 6.9e-12, P = 6.9e-12
 Identities = 30/71 (42%), Positives = 46/71 (64%)

Query:    20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
             L ++  HL E +K L++GSGSG L+   S ++  TG+VIGI+H+ +LV  SI N+   + 
Sbjct:   107 LELLHDHLYEGAKALDVGSGSGILSVCFSRMVGPTGKVIGIDHIKELVEDSIANVKKDDP 166

Query:    80 RLLTDGHIKFV 90
              L+T G IK +
Sbjct:   167 SLITSGRIKLI 177

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1N9Y6 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 28/71 (39%), Positives = 46/71 (64%)

Query:    20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
             L ++   L+E +K L++GSGSG LT   S ++   GQV+GI+H+ +LV+ SI N+   + 
Sbjct:    50 LELLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKKDDP 109

Query:    80 RLLTDGHIKFV 90
              LL+ G +K +
Sbjct:   110 TLLSSGRVKLI 120

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1NJV4 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 28/71 (39%), Positives = 46/71 (64%)

Query:    20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
             L ++   L+E +K L++GSGSG LT   S ++   GQV+GI+H+ +LV+ SI N+   + 
Sbjct:    38 LELLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKKDDP 97

Query:    80 RLLTDGHIKFV 90
              LL+ G +K +
Sbjct:    98 TLLSSGRVKLI 108

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5F3N1 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 28/71 (39%), Positives = 46/71 (64%)

Query:    20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
             L ++   L+E +K L++GSGSG LT   S ++   GQV+GI+H+ +LV+ SI N+   + 
Sbjct:    69 LELLSDQLHEGAKALDVGSGSGILTACFSRMVGPKGQVVGIDHIKELVDDSINNVKKDDP 128

Query:    80 RLLTDGHIKFV 90
              LL+ G +K +
Sbjct:   129 TLLSSGRVKLI 139

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|G3MZZ6 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Bos taurus (taxid:9913)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 28/71 (39%), Positives = 47/71 (66%)

Query:    20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
             L ++   LNE +K L++GSGSG LT   + ++  +G+VIGI+H+ +LV+ SI N+   + 
Sbjct:    69 LELLFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDP 128

Query:    80 RLLTDGHIKFV 90
              LL+ G ++ V
Sbjct:   129 MLLSSGRVQLV 139

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|P15246 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Bos taurus (taxid:9913)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 28/71 (39%), Positives = 47/71 (66%)

Query:    20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
             L ++   LNE +K L++GSGSG LT   + ++  +G+VIGI+H+ +LV+ SI N+   + 
Sbjct:    69 LELLFDQLNEGAKALDVGSGSGILTACFARMVGPSGKVIGIDHIKELVDDSINNVRKDDP 128

Query:    80 RLLTDGHIKFV 90
              LL+ G ++ V
Sbjct:   129 MLLSSGRVQLV 139

GO:0005737 "cytoplasm" evidence=IEA

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

UNIPROTKB|B7Z972 PCMT1 "Protein-L-isoaspartate O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 27/71 (38%), Positives = 47/71 (66%)

Query:    20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
             L ++   L+E +K L++GSGSG LT   + ++  TG+VIGI+H+ +LV+ S+ N+   + 
Sbjct:    34 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP 93

Query:    80 RLLTDGHIKFV 90
              LL+ G ++ V
Sbjct:    94 TLLSSGRVQLV 104

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P22061 PCMT1 "Protein-L-isoaspartate(D-aspartate) O-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 27/71 (38%), Positives = 47/71 (66%)

Query:    20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
             L ++   L+E +K L++GSGSG LT   + ++  TG+VIGI+H+ +LV+ S+ N+   + 
Sbjct:    69 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP 128

Query:    80 RLLTDGHIKFV 90
              LL+ G ++ V
Sbjct:   129 TLLSSGRVQLV 139

GO:0004719 "protein-L-isoaspartate (D-aspartate) O-methyltransferase activity" evidence=TAS

GO:0030091 "protein repair" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006479 "protein methylation" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	139
pfam01135	210	pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat	2e-11
TIGR00080	215	TIGR00080, pimt, protein-L-isoaspartate(D-aspartat	3e-09
PRK13942	212	PRK13942, PRK13942, protein-L-isoaspartate O-methy	5e-09
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	4e-08
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	4e-07
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	2e-04
PRK13944	205	PRK13944, PRK13944, protein-L-isoaspartate O-methy	5e-04
PRK13943	322	PRK13943, PRK13943, protein-L-isoaspartate O-methy	7e-04
PRK00312	212	PRK00312, pcm, protein-L-isoaspartate O-methyltran	8e-04
PTZ00098	263	PTZ00098, PTZ00098, phosphoethanolamine N-methyltr	0.001
pfam01269	229	pfam01269, Fibrillarin, Fibrillarin	0.002
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.002
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	0.002

>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 10/63 (15%)

Query: 22  IIQPH----------LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
           I  PH          L    +VLEIGSGSGYLT   + ++   G V+ IEH+P+LV  + 
Sbjct: 56  ISAPHMHAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIAR 115

Query: 72  QNI 74
           +N+
Sbjct: 116 RNL 118

Length = 210

>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate) O-methyltransferase

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 13  ISAILTYLSIIQ-PHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
           ISA      + +   L    KVLEIG+GSGY   +++E++   G V+ IE +P+L   + 
Sbjct: 60  ISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE 119

Query: 72  QNI 74
           + +
Sbjct: 120 RRL 122

This is an all-kingdom (but not all species) full-length ortholog enzyme for repairing aging proteins. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt [Protein fate, Protein modification and repair]. Length = 215

>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 27  LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL 75
           L E  KVLEIG+GSGY   +++E++  +G+V+ IE +P+L   + + + 
Sbjct: 74  LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK 122

Length = 212

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 27  LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
           L    +VLEIG+GSGY   +++ L    G+V+ IE + +L   + +N+
Sbjct: 70  LKPGDRVLEIGTGSGYQAAVLARL---VGRVVSIERIEELAEQARRNL 114

Length = 209

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 15/47 (31%), Positives = 29/47 (61%)

Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN 73
          L    KVL++G G+GYLT +++E +    +V+GI+   + +  + +N
Sbjct: 1  LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKEN 47

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 13  ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
              I+  L I     +  S+VLE G+GSG LT  ++  +   G V   E
Sbjct: 83  AGYIVARLGI-----SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYE 126

Length = 256

>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 32  KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76
           K+LE+G+GSGY   + +E +   G+V  +E V +L   + QNI  
Sbjct: 75  KILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER 119

Length = 205

>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 26  HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDG 85
            L++  +VLEIG G+GY   ++S ++   G V+ +E+     +  I  I   N R L   
Sbjct: 77  GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY-----SRKICEIAKRNVRRLGIE 131

Query: 86  HIKFV 90
           ++ FV
Sbjct: 132 NVIFV 136

Length = 322

>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase; Reviewed

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 13  ISAILTYLSIIQP-HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
           IS       + +   L    +VLEIG+GSGY   +++ L+    +V  +E +  L   + 
Sbjct: 61  ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAK 117

Query: 72  QN 73
           + 
Sbjct: 118 RR 119

Length = 212

>gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 11/87 (12%)

Query: 11  GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSS 70
           GGI A    LS I+  LNENSKVL+IGSG G     I+E   +   V G++   ++VN  
Sbjct: 36  GGIEATTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKYGA--HVHGVDICEKMVNI- 90

Query: 71  IQNILHSNARLLTDGHIKFVALGMIKR 97
                 +  R      I+F A  ++K+
Sbjct: 91  ------AKLRNSDKNKIEFEANDILKK 111

Length = 263

>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 14/71 (19%)

Query: 5   KIGAAI-GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHV 63
           K+ AAI  G+  I          +   SKVL +G+ SG   + +S+++   G V  +E  
Sbjct: 57  KLAAAILKGLDNI---------PIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFS 107

Query: 64  P----QLVNSS 70
           P    +L+N +
Sbjct: 108 PRVGRELINMA 118

Length = 229

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 9/80 (11%)

Query: 29  ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIK 88
             ++VL+IG G+G L   ++ L     +V G++  P+++      +   NA+L     I 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFP-GARVTGVDLSPEML-----ELARENAKLALGPRIT 54

Query: 89  FVALGMIKRIETVELMMKFD 108
           FV  G     + ++L+  FD
Sbjct: 55  FVQ-GDAP--DALDLLEGFD 71

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI--LHSNARLLT 83
           +    +VL++G G G     ++  +   G+V+GI+    ++  + +    L  N   + 
Sbjct: 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVR 75

Query: 84 D 84
           
Sbjct: 76 G 76

Length = 241

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.72
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.71
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.71
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.71
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.7
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.7
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.69
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.67
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.66
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.66
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.64
PLN02244	340	tocopherol O-methyltransferase	99.61
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.6
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.6
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.6
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.59
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.59
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.58
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.58
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.57
PRK11207	197	tellurite resistance protein TehB; Provisional	99.57
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.57
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.56
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.56
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.55
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.55
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.55
COG4123	248	Predicted O-methyltransferase [General function pr	99.55
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.54
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.54
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.54
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.52
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.52
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.52
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.51
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.51
PLN02336	475	phosphoethanolamine N-methyltransferase	99.5
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.49
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.49
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.49
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.49
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.48
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.48
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.48
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.48
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.48
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.48
COG2890	280	HemK Methylase of polypeptide chain release factor	99.47
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.47
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.47
PRK08317	241	hypothetical protein; Provisional	99.47
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.46
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.46
KOG1270|consensus	282		99.45
PLN02490	340	MPBQ/MSBQ methyltransferase	99.45
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.45
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.45
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.45
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.44
PHA03412	241	putative methyltransferase; Provisional	99.44
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.44
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.44
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.43
PLN02476	278	O-methyltransferase	99.43
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.43
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.42
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.41
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.41
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.41
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.4
PRK06922	677	hypothetical protein; Provisional	99.4
KOG1540|consensus	296		99.4
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.4
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.4
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.39
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.38
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.38
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.38
PRK06202	232	hypothetical protein; Provisional	99.38
PRK07402	196	precorrin-6B methylase; Provisional	99.38
PHA03411	279	putative methyltransferase; Provisional	99.38
PRK12335	287	tellurite resistance protein TehB; Provisional	99.38
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.37
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.37
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.37
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.36
KOG1661|consensus	237		99.36
PRK14967	223	putative methyltransferase; Provisional	99.35
PRK05785	226	hypothetical protein; Provisional	99.35
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.34
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.34
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.34
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.34
PLN02336	475	phosphoethanolamine N-methyltransferase	99.33
PRK04266	226	fibrillarin; Provisional	99.33
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	99.32
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.32
PRK14968	188	putative methyltransferase; Provisional	99.31
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.31
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.31
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.31
PLN03075	296	nicotianamine synthase; Provisional	99.31
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.3
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.3
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.29
COG4122	219	Predicted O-methyltransferase [General function pr	99.28
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.28
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.28
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.27
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.26
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.26
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.26
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.25
TIGR03438	301	probable methyltransferase. This model represents	99.25
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.25
KOG2904|consensus	328		99.25
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.24
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.23
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	99.22
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.22
PRK04457	262	spermidine synthase; Provisional	99.22
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.21
PLN02672	1082	methionine S-methyltransferase	99.21
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.21
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.2
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.19
PTZ00146	293	fibrillarin; Provisional	99.19
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.18
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.17
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.17
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.16
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.16
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.15
PRK00811	283	spermidine synthase; Provisional	99.15
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.14
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.14
KOG2915|consensus	314		99.13
KOG0820|consensus	315		99.12
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	99.12
KOG3420|consensus	185		99.11
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.11
KOG1663|consensus	237		99.11
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.11
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.11
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.09
KOG3010|consensus	261		99.09
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.08
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.08
TIGR00438	188	rrmJ cell division protein FtsJ.	99.08
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.08
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.07
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.07
KOG1541|consensus	270		99.07
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.06
PLN02366	308	spermidine synthase	99.04
PRK03612	521	spermidine synthase; Provisional	99.02
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.0
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.0
KOG3191|consensus	209		98.99
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.99
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.98
PRK01581	374	speE spermidine synthase; Validated	98.98
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.97
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.97
KOG4300|consensus	252		98.95
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.95
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.94
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.93
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.92
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.91
KOG1499|consensus	346		98.9
KOG1271|consensus	227		98.85
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.85
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.79
COG2521	287	Predicted archaeal methyltransferase [General func	98.78
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.77
KOG1500|consensus	517		98.74
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.73
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.71
KOG2187|consensus	534		98.7
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.67
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.66
KOG2899|consensus	288		98.66
PLN02823	336	spermine synthase	98.65
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.64
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.64
KOG2730|consensus	263		98.63
KOG2940|consensus	325		98.63
PRK04148	134	hypothetical protein; Provisional	98.62
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.62
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.6
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.55
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.51
COG2520	341	Predicted methyltransferase [General function pred	98.51
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.5
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.5
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.48
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.47
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.46
PRK10742	250	putative methyltransferase; Provisional	98.46
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.44
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.44
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.43
COG4076	252	Predicted RNA methylase [General function predicti	98.43
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.42
KOG1975|consensus	389		98.41
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.37
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.36
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.35
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.35
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.35
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.34
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.34
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.33
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.31
KOG2361|consensus	264		98.3
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.3
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	98.27
PF13679	141	Methyltransf_32: Methyltransferase domain	98.24
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	98.23
PRK00536	262	speE spermidine synthase; Provisional	98.21
COG0286	489	HsdM Type I restriction-modification system methyl	98.13
KOG4589|consensus	232		98.08
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.06
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.04
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.04
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.0
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.96
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.96
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.9
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.89
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.86
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.72
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.71
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.69
PRK11524	284	putative methyltransferase; Provisional	97.68
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.68
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.66
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.65
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.64
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.64
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.62
KOG3115|consensus	249		97.46
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.45
PRK13699	227	putative methylase; Provisional	97.43
KOG1709|consensus	271		97.37
COG3897	218	Predicted methyltransferase [General function pred	97.36
KOG3045|consensus	325		97.31
KOG3178|consensus	342		97.25
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.23
KOG3987|consensus	288		97.2
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.18
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.16
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.14
KOG1501|consensus	636		97.1
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.08
KOG1269|consensus	364		97.05
KOG1596|consensus	317		97.04
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.01
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.95
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.95
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.92
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.83
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.82
PHA01634	156	hypothetical protein	96.74
KOG1122|consensus	460		96.73
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.7
COG4798	238	Predicted methyltransferase [General function pred	96.44
KOG1331|consensus	293		96.34
KOG1099|consensus	294		96.09
KOG2651|consensus	476		96.04
KOG4058|consensus	199		96.02
KOG2352|consensus	482		95.98
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.98
TIGR00497	501	hsdM type I restriction system adenine methylase (	95.95
KOG2671|consensus	421		95.93
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	95.89
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.81
KOG1227|consensus	351		95.72
KOG0822|consensus	649		95.58
KOG2352|consensus	482		95.54
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.26
KOG2198|consensus	375		94.95
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.87
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	94.73
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	94.67
PTZ00357	1072	methyltransferase; Provisional	94.59
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	94.59
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	94.24
COG1565	370	Uncharacterized conserved protein [Function unknow	94.22
KOG0024|consensus	354		94.16
KOG2078|consensus	495		93.91
PRK10458	467	DNA cytosine methylase; Provisional	93.82
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	93.79
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	93.49
PLN02668	386	indole-3-acetate carboxyl methyltransferase	93.28
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	93.26
COG0863	302	DNA modification methylase [DNA replication, recom	93.17
KOG1562|consensus	337		93.17
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	93.14
KOG2920|consensus	282		92.8
KOG2912|consensus	419		92.71
PRK09496	453	trkA potassium transporter peripheral membrane com	92.62
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	92.61
COG1568	354	Predicted methyltransferases [General function pre	92.46
KOG1098|consensus	780		91.05
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	90.99
KOG2782|consensus	303		90.8
PRK07326	237	short chain dehydrogenase; Provisional	90.55
PRK07904	253	short chain dehydrogenase; Provisional	90.37
PRK06125	259	short chain dehydrogenase; Provisional	90.32
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	90.25
PRK07454	241	short chain dehydrogenase; Provisional	90.23
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	90.17
PRK08267	260	short chain dehydrogenase; Provisional	90.14
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	89.92
PRK07814	263	short chain dehydrogenase; Provisional	89.64
KOG2360|consensus	413		89.58
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	89.56
PRK08213	259	gluconate 5-dehydrogenase; Provisional	89.41
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	89.05
PRK05599	246	hypothetical protein; Provisional	89.05
PRK06949	258	short chain dehydrogenase; Provisional	89.01
PRK07523	255	gluconate 5-dehydrogenase; Provisional	88.89
PRK07774	250	short chain dehydrogenase; Provisional	88.73
KOG0821|consensus	326		88.72
COG0569	225	TrkA K+ transport systems, NAD-binding component [	88.67
KOG3924|consensus	419		88.54
KOG2793|consensus	248		88.48
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	88.46
PRK08339	263	short chain dehydrogenase; Provisional	88.37
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	88.35
PRK10669	558	putative cation:proton antiport protein; Provision	88.24
PRK08340	259	glucose-1-dehydrogenase; Provisional	88.11
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	88.05
PRK06940	275	short chain dehydrogenase; Provisional	88.01
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	87.94
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	87.83
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.43
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	87.23
PRK05854	313	short chain dehydrogenase; Provisional	87.16
PRK07890	258	short chain dehydrogenase; Provisional	87.13
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	87.0
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.0
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	86.99
PRK05867	253	short chain dehydrogenase; Provisional	86.55
PRK08251	248	short chain dehydrogenase; Provisional	86.54
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	86.51
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	86.43
PRK06720	169	hypothetical protein; Provisional	86.41
PRK06194	287	hypothetical protein; Provisional	86.34
PRK11524	284	putative methyltransferase; Provisional	86.13
COG3320	382	Putative dehydrogenase domain of multifunctional n	86.09
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	86.01
PRK07062	265	short chain dehydrogenase; Provisional	85.97
PRK05866	293	short chain dehydrogenase; Provisional	85.96
KOG3201|consensus	201		85.9
PRK03562	621	glutathione-regulated potassium-efflux system prot	85.71
PRK03659	601	glutathione-regulated potassium-efflux system prot	85.64
PRK06172	253	short chain dehydrogenase; Provisional	85.46
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	84.96
PRK07063	260	short chain dehydrogenase; Provisional	84.64
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	84.64
PRK07067	257	sorbitol dehydrogenase; Provisional	84.56
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	84.39
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	84.33
KOG2798|consensus	369		84.23
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	84.18
PRK12829	264	short chain dehydrogenase; Provisional	84.11
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	84.02
KOG1205|consensus	282		83.98
PRK07074	257	short chain dehydrogenase; Provisional	83.86
PRK05872	296	short chain dehydrogenase; Provisional	83.73
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.6
PRK08219	227	short chain dehydrogenase; Provisional	83.41
PRK07109	334	short chain dehydrogenase; Provisional	83.36
PLN02253	280	xanthoxin dehydrogenase	83.27
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	83.23
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	83.22
PRK06914	280	short chain dehydrogenase; Provisional	83.15
PRK07453	322	protochlorophyllide oxidoreductase; Validated	83.12
PRK07097	265	gluconate 5-dehydrogenase; Provisional	83.05
PRK06124	256	gluconate 5-dehydrogenase; Provisional	83.04
KOG1201|consensus	300		82.85
PLN02896	353	cinnamyl-alcohol dehydrogenase	82.65
COG2933	358	Predicted SAM-dependent methyltransferase [General	82.59
PRK07102	243	short chain dehydrogenase; Provisional	82.31
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	82.24
PRK06197	306	short chain dehydrogenase; Provisional	82.1
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	81.88
PRK12939	250	short chain dehydrogenase; Provisional	81.85
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	81.75
COG2961	279	ComJ Protein involved in catabolism of external DN	81.58
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	81.38
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	81.3
PRK07024	257	short chain dehydrogenase; Provisional	81.26
PRK06139	330	short chain dehydrogenase; Provisional	81.11
PLN03209	576	translocon at the inner envelope of chloroplast su	81.04
PRK08264	238	short chain dehydrogenase; Validated	80.83
PRK09072	263	short chain dehydrogenase; Provisional	80.83
PRK05650	270	short chain dehydrogenase; Provisional	80.54
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	80.52
KOG1253|consensus	525		80.5
PRK05876	275	short chain dehydrogenase; Provisional	80.42
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	80.25
PRK07576	264	short chain dehydrogenase; Provisional	80.05

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.72  E-value=4.9e-17  Score=115.54  Aligned_cols=118  Identities=23%  Similarity=0.367  Sum_probs=96.7

Q ss_pred             hhhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757           4 VKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL   82 (139)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~   82 (139)
                      ++.|+.++.|..+..+++.+.  +.++.+|||+|||+|+.+..+++..++.++++++|+++++++.+++++.. +.    
T Consensus        53 ~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~----  126 (212)
T PRK13942         53 IGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY----  126 (212)
T ss_pred             CCCCCEeCcHHHHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----
Confidence            356778899999999999886  68899999999999999999999886667999999999999999999987 44    


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                        .+++++++|+.+.+.      +...||+|++....+.++.   ..+..++|+|.
T Consensus       127 --~~v~~~~gd~~~~~~------~~~~fD~I~~~~~~~~~~~---~l~~~LkpgG~  171 (212)
T PRK13942        127 --DNVEVIVGDGTLGYE------ENAPYDRIYVTAAGPDIPK---PLIEQLKDGGI  171 (212)
T ss_pred             --CCeEEEECCcccCCC------cCCCcCEEEECCCcccchH---HHHHhhCCCcE
Confidence              789999999765332      2357999999887666543   34556777774

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.71  E-value=6.7e-17  Score=114.28  Aligned_cols=118  Identities=24%  Similarity=0.276  Sum_probs=95.0

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccccc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLT   83 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~   83 (139)
                      ..++.++.+..+.++++.+.  ..++.+|||+|||+|+.+..+++..++.++++++|+++++++.|++++.. +.     
T Consensus        50 ~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----  122 (205)
T PRK13944         50 FAGATISAPHMVAMMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----  122 (205)
T ss_pred             CCCCEechHHHHHHHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----
Confidence            45678888888888888885  57889999999999999999999876567999999999999999999887 43     


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      ..+++++.+|+.+.+.      ...+||+|+++.+.++++.   ..++.++|+|.
T Consensus       123 ~~~v~~~~~d~~~~~~------~~~~fD~Ii~~~~~~~~~~---~l~~~L~~gG~  168 (205)
T PRK13944        123 WGVVEVYHGDGKRGLE------KHAPFDAIIVTAAASTIPS---ALVRQLKDGGV  168 (205)
T ss_pred             CCcEEEEECCcccCCc------cCCCccEEEEccCcchhhH---HHHHhcCcCcE
Confidence            2468999999765432      1357999999999887764   34566777775

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=7.8e-17  Score=112.88  Aligned_cols=105  Identities=23%  Similarity=0.348  Sum_probs=92.7

Q ss_pred             hhhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757           4 VKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT   83 (139)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~   83 (139)
                      +..|++++.|+++.++++.+.  ++++++|||||||+|+.+.-|++...   +|+++|..++..+.|++++..     ++
T Consensus        49 i~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~-----lg  118 (209)
T COG2518          49 IGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLET-----LG  118 (209)
T ss_pred             CCCCceecCcHHHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHH-----cC
Confidence            467999999999999999997  79999999999999999999999987   999999999999999999998     33


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                      ..|++++++|...+++      +...||.|+.....-.++.
T Consensus       119 ~~nV~v~~gDG~~G~~------~~aPyD~I~Vtaaa~~vP~  153 (209)
T COG2518         119 YENVTVRHGDGSKGWP------EEAPYDRIIVTAAAPEVPE  153 (209)
T ss_pred             CCceEEEECCcccCCC------CCCCcCEEEEeeccCCCCH
Confidence            4889999999998876      2356899988887555554

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.71  E-value=3.9e-17  Score=115.58  Aligned_cols=106  Identities=23%  Similarity=0.379  Sum_probs=85.6

Q ss_pred             hhhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757           4 VKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL   82 (139)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~   82 (139)
                      ++.++++++|+++.++++.+.  ++++++|||+|||+|+.+..++...++.+.|+++|.++...+.|++++.. +.    
T Consensus        49 i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~----  122 (209)
T PF01135_consen   49 IGCGQTISAPSMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI----  122 (209)
T ss_dssp             EETTEEE--HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT----
T ss_pred             ecceeechHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc----
Confidence            356789999999999999997  89999999999999999999999988777899999999999999999998 54    


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                        .|++++++|...+++.      ...||.|+++.....++
T Consensus       123 --~nv~~~~gdg~~g~~~------~apfD~I~v~~a~~~ip  155 (209)
T PF01135_consen  123 --DNVEVVVGDGSEGWPE------EAPFDRIIVTAAVPEIP  155 (209)
T ss_dssp             --HSEEEEES-GGGTTGG------G-SEEEEEESSBBSS--
T ss_pred             --CceeEEEcchhhcccc------CCCcCEEEEeeccchHH
Confidence              7999999998776652      35699999988765444

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.70  E-value=4.9e-17  Score=116.65  Aligned_cols=98  Identities=15%  Similarity=0.264  Sum_probs=86.2

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .+|.+|||+|||||..+..+++..+ .++++++|+|+.|++.++++... +.      .+++++++|+.+    +  +.+
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~------~~i~fv~~dAe~----L--Pf~  116 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGV------QNVEFVVGDAEN----L--PFP  116 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCc------cceEEEEechhh----C--CCC
Confidence            4789999999999999999999997 88999999999999999999988 54      559999999544    3  345


Q ss_pred             CCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      +.+||++.+...++.++++.   ...||+++|+|.
T Consensus       117 D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~  151 (238)
T COG2226         117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGR  151 (238)
T ss_pred             CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeE
Confidence            78899999999999999864   556999999995

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.70  E-value=1.4e-16  Score=113.28  Aligned_cols=117  Identities=21%  Similarity=0.334  Sum_probs=94.1

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccccc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLT   83 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~   83 (139)
                      +.++.++.+..+..+++.+.  ++++.+|||+|||+|+.+..+++..++.++|+++|+++++++.|++++.. +.     
T Consensus        55 ~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-----  127 (215)
T TIGR00080        55 GYGQTISAPHMVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-----  127 (215)
T ss_pred             CCCCEechHHHHHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----
Confidence            34667788888899999886  68889999999999999999999886667899999999999999999988 44     


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                       .+++++++|+.+.+.      ...+||+|+++.+.+.+..   ..+..++|+|.
T Consensus       128 -~~v~~~~~d~~~~~~------~~~~fD~Ii~~~~~~~~~~---~~~~~L~~gG~  172 (215)
T TIGR00080       128 -DNVIVIVGDGTQGWE------PLAPYDRIYVTAAGPKIPE---ALIDQLKEGGI  172 (215)
T ss_pred             -CCeEEEECCcccCCc------ccCCCCEEEEcCCcccccH---HHHHhcCcCcE
Confidence             789999999765322      2357999999887665543   24566777774

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.69  E-value=3.5e-17  Score=117.74  Aligned_cols=100  Identities=17%  Similarity=0.289  Sum_probs=73.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||||..+..+++..++.++|+++|+|+.|++.|+++.+. +.      .+++++++|+.+    +  +.
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------~~i~~v~~da~~----l--p~  112 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------QNIEFVQGDAED----L--PF  112 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------SEEEEE-BTTB--------S
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------CCeeEEEcCHHH----h--cC
Confidence            47788999999999999999999987788999999999999999999987 54      699999999655    2  23


Q ss_pred             cCCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      ++++||+|++...+|.++++.   ...+++++|+|.
T Consensus       113 ~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~  148 (233)
T PF01209_consen  113 PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGR  148 (233)
T ss_dssp             -TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEE
T ss_pred             CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeE
Confidence            468899999999999998864   444899999885

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.67  E-value=1.4e-16  Score=107.55  Aligned_cols=99  Identities=16%  Similarity=0.330  Sum_probs=78.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +++.+|||+|||+|..+..+++...+.++++|+|+++++++.|+++++. +.      ++++++++|+.+ +++   ..+
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~-l~~---~~~   71 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIED-LPQ---ELE   71 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTC-GCG---CSS
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhc-ccc---ccC
Confidence            4678999999999999999997655677999999999999999999887 54      699999999766 432   111


Q ss_pred             CCceeEEecCccccccccce---eeeeeeccCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPV---CINYTATMPEG  137 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g  137 (139)
                       ++||+|+++.++|++.++.   ....+.++|+|
T Consensus        72 -~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G  104 (152)
T PF13847_consen   72 -EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGG  104 (152)
T ss_dssp             -TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEE
T ss_pred             -CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCc
Confidence             6899999999999999874   23355555554

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.66  E-value=6.3e-16  Score=113.01  Aligned_cols=103  Identities=16%  Similarity=0.186  Sum_probs=82.5

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.+|||+|||+|..+..+++..++.++++|+|+|++|++.|+++... ..   ...++++++++|+.+    +  +.
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~----l--p~  141 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATD----L--PF  141 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEccccc----C--CC
Confidence            46788999999999999999999876667999999999999999877542 10   013689999999654    2  23


Q ss_pred             cCCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      +.++||+|+++.++|++.+|.   ...++.++|+|.
T Consensus       142 ~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~  177 (261)
T PLN02233        142 DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSR  177 (261)
T ss_pred             CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcE
Confidence            456899999999999999885   445889999986

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.66  E-value=3.6e-16  Score=99.94  Aligned_cols=98  Identities=16%  Similarity=0.310  Sum_probs=74.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      |+.+|||+|||+|..+..+++.. +.++++++|+|+++++.+++++.. ..     .++++++++|+ . ..    ....
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~-~-~~----~~~~   68 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDA-E-FD----PDFL   68 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCC-H-GG----TTTS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECcc-c-cC----cccC
Confidence            57899999999999999999965 466999999999999999999954 33     48999999996 2 11    1123


Q ss_pred             CceeEEecCc-cccccccc------eeeeeeeccCCCC
Q psy5757         108 DRYDFLPHAP-AESWMNIP------VCINYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~-~~~~~~~p------~~~~~~~~~p~g~  138 (139)
                      ++||+|++.. .++++...      .......+.|+|.
T Consensus        69 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~  106 (112)
T PF12847_consen   69 EPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGR  106 (112)
T ss_dssp             SCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEE
T ss_pred             CCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcE
Confidence            5699999999 55644432      4444666667664

...

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.64  E-value=1.4e-15  Score=108.92  Aligned_cols=100  Identities=13%  Similarity=0.275  Sum_probs=82.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ++++.+|||+|||+|..+..+++..++.++++++|+++++++.+++++.. +.      ++++++++|..+ +     ..
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~-~-----~~  110 (231)
T TIGR02752        43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAME-L-----PF  110 (231)
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechhc-C-----CC
Confidence            56788999999999999999999876677999999999999999999876 43      689999999644 1     12


Q ss_pred             cCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      +.++||+|+++.++|+..++...   .++.++|+|.
T Consensus       111 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~  146 (231)
T TIGR02752       111 DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGK  146 (231)
T ss_pred             CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeE
Confidence            35689999999999998887543   3677788874

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02244 tocopherol O-methyltransferase

Probab=99.61  E-value=4e-15  Score=112.49  Aligned_cols=99  Identities=12%  Similarity=0.159  Sum_probs=80.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++..+  ++++|+|+++.+++.++++... +.     .++++++++|+.+ +     +.+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~~~D~~~-~-----~~~  183 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGL-----SDKVSFQVADALN-Q-----PFE  183 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcCccc-C-----CCC
Confidence            5678999999999999999999863  4999999999999999998876 44     3579999999654 1     224


Q ss_pred             CCceeEEecCcccccccccee---eeeeeccCCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVC---INYTATMPEGSY  139 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~~  139 (139)
                      .++||+|++..++||+.++..   ..++.++|+|.+
T Consensus       184 ~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~l  219 (340)
T PLN02244        184 DGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRI  219 (340)
T ss_pred             CCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEE
Confidence            578999999999999987643   347888998853

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.60  E-value=9.7e-16  Score=94.67  Aligned_cols=89  Identities=16%  Similarity=0.278  Sum_probs=70.2

Q ss_pred             EEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCceeEE
Q psy5757          34 LEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFL  113 (139)
Q Consensus        34 LdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v  113 (139)
                      ||+|||+|..+..+++.  +..+++++|+++.+++.++++...        .++.++++|+.+    +  +.+.++||+|
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~--------~~~~~~~~d~~~----l--~~~~~sfD~v   64 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN--------EGVSFRQGDAED----L--PFPDNSFDVV   64 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT--------STEEEEESBTTS----S--SS-TT-EEEE
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc--------cCchheeehHHh----C--cccccccccc
Confidence            79999999999999999  234999999999999999998866        456688888554    2  3446789999


Q ss_pred             ecCccccccccce---eeeeeeccCCCC
Q psy5757         114 PHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus       114 i~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      +++.++||+.++.   ...++.++|+|.
T Consensus        65 ~~~~~~~~~~~~~~~l~e~~rvLk~gG~   92 (95)
T PF08241_consen   65 FSNSVLHHLEDPEAALREIYRVLKPGGR   92 (95)
T ss_dssp             EEESHGGGSSHHHHHHHHHHHHEEEEEE
T ss_pred             ccccceeeccCHHHHHHHHHHHcCcCeE
Confidence            9999999997664   334888888885

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.60  E-value=3.1e-15  Score=108.90  Aligned_cols=100  Identities=13%  Similarity=0.182  Sum_probs=78.3

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~   96 (139)
                      ..+++.+.  ..++.+|||+|||+|.++..+++.. +.++++|+|+|+.+++.|++            .+++++++|+.+
T Consensus        19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~------------~~~~~~~~d~~~   83 (255)
T PRK14103         19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARE------------RGVDARTGDVRD   83 (255)
T ss_pred             HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh------------cCCcEEEcChhh
Confidence            34445543  4677899999999999999999987 46699999999999998854            246788888543


Q ss_pred             hhHHHhhhccCCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757          97 RIETVELMMKFDRYDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus        97 ~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                          +  . +.++||+|+++.++||++++..   ..++.++|+|.
T Consensus        84 ----~--~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~  121 (255)
T PRK14103         84 ----W--K-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSW  121 (255)
T ss_pred             ----C--C-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcE
Confidence                2  1 2457999999999999988653   34788999985

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.60  E-value=4.9e-15  Score=107.45  Aligned_cols=101  Identities=11%  Similarity=0.232  Sum_probs=81.0

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVEL  103 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~  103 (139)
                      .+.++.+|||+|||+|..+..+++.. .+.++++++|+|+.+++.|++++.. +.     ..+++++++|+.+    +  
T Consensus        53 ~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~~----~--  121 (247)
T PRK15451         53 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRD----I--  121 (247)
T ss_pred             hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChhh----C--
Confidence            35678899999999999999998854 3567999999999999999999876 43     3579999999543    1  


Q ss_pred             hccCCceeEEecCccccccccc-----eeeeeeeccCCCCC
Q psy5757         104 MMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGSY  139 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~~  139 (139)
                        +...+|+|+++.++|++..+     ....++.++|+|.+
T Consensus       122 --~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l  160 (247)
T PRK15451        122 --AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGAL  160 (247)
T ss_pred             --CCCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEE
Confidence              23458999999999998643     35558899999853

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.59  E-value=6.2e-15  Score=107.33  Aligned_cols=98  Identities=18%  Similarity=0.276  Sum_probs=80.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++...   +|+++|+++++++.|+++... +.     .++++++++|+.+ +.    ...
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~~-l~----~~~  109 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQD-IA----QHL  109 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHHH-Hh----hhc
Confidence            4567999999999999999999753   999999999999999999877 54     3678999999654 21    113


Q ss_pred             CCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                      .++||+|+++.++||+.+|..   ..++.++|+|.
T Consensus       110 ~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~  144 (255)
T PRK11036        110 ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGA  144 (255)
T ss_pred             CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeE
Confidence            467999999999999988753   44888999985

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.59  E-value=1.1e-14  Score=103.38  Aligned_cols=113  Identities=18%  Similarity=0.256  Sum_probs=89.4

Q ss_pred             hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccC
Q psy5757           6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTD   84 (139)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~   84 (139)
                      .++.++++....+++..+.  .+++.+|||+|||+|+.+..+++...   +++++|+++++++.+++++.. +.      
T Consensus        57 ~~~~~~~p~~~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~------  125 (212)
T PRK00312         57 CGQTISQPYMVARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGL------  125 (212)
T ss_pred             CCCeeCcHHHHHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCC------
Confidence            4566788888888888775  67889999999999999998888764   899999999999999999987 44      


Q ss_pred             CcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          85 GHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        85 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      .+++++.+|..+.+.      +.++||+|+++.+.+++..   ..+..+.|+|.
T Consensus       126 ~~v~~~~~d~~~~~~------~~~~fD~I~~~~~~~~~~~---~l~~~L~~gG~  170 (212)
T PRK00312        126 HNVSVRHGDGWKGWP------AYAPFDRILVTAAAPEIPR---ALLEQLKEGGI  170 (212)
T ss_pred             CceEEEECCcccCCC------cCCCcCEEEEccCchhhhH---HHHHhcCCCcE
Confidence            679999999654322      2357999999988777643   23556666664

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.58  E-value=3.9e-15  Score=103.39  Aligned_cols=96  Identities=14%  Similarity=0.173  Sum_probs=78.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ++.+|||+|||+|..+..++... +.++|+++|.++.+++.++++... +.      .+++++++|+.+ +.      ..
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~-~~------~~  107 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAED-FQ------HE  107 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhh-cc------cc
Confidence            47899999999999999998766 467999999999999999998877 43      679999999654 21      24


Q ss_pred             CceeEEecCccccccccceeeeeeeccCCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPVCINYTATMPEGSY  139 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~~  139 (139)
                      ++||+|+++. ++.+.+.....++.++|+|.+
T Consensus       108 ~~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~l  138 (181)
T TIGR00138       108 EQFDVITSRA-LASLNVLLELTLNLLKVGGYF  138 (181)
T ss_pred             CCccEEEehh-hhCHHHHHHHHHHhcCCCCEE
Confidence            5799999988 777777777778888999853

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.58  E-value=7.2e-15  Score=102.50  Aligned_cols=98  Identities=13%  Similarity=0.157  Sum_probs=77.1

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .++++.+|||+|||+|..+..+++.. +.++++++|+++.+++.|+++... +.      .+++++++|+.+ +.     
T Consensus        42 ~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~-~~-----  108 (187)
T PRK00107         42 YLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEE-FG-----  108 (187)
T ss_pred             hcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhh-CC-----
Confidence            34668999999999999999999876 467999999999999999999988 54      569999999654 21     


Q ss_pred             ccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757         105 MKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                       ..++||+|+++.. ....+.....++.++|+|.
T Consensus       109 -~~~~fDlV~~~~~-~~~~~~l~~~~~~LkpGG~  140 (187)
T PRK00107        109 -QEEKFDVVTSRAV-ASLSDLVELCLPLLKPGGR  140 (187)
T ss_pred             -CCCCccEEEEccc-cCHHHHHHHHHHhcCCCeE
Confidence             1457999999863 3344455556778888875

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.57  E-value=7.9e-15  Score=106.75  Aligned_cols=94  Identities=17%  Similarity=0.334  Sum_probs=75.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..++.+|||+|||+|.++..+++.. +.++++++|+++.+++.++++.          +++.++.+|+.+ +.      +
T Consensus        29 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~-~~------~   90 (258)
T PRK01683         29 LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL----------PDCQFVEADIAS-WQ------P   90 (258)
T ss_pred             CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhc-cC------C
Confidence            4677899999999999999999987 4569999999999999998763          567888888543 11      2


Q ss_pred             CCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                      ..+||+|+++.++||+.++..   ..++.++|+|.
T Consensus        91 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~  125 (258)
T PRK01683         91 PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGV  125 (258)
T ss_pred             CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcE
Confidence            357999999999999988743   33777888874

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.57  E-value=9.3e-15  Score=102.75  Aligned_cols=104  Identities=13%  Similarity=0.197  Sum_probs=79.5

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      ..+++.+.  ..++.+|||+|||+|..+..+++...   +|+++|+|+.+++.++++... +.      .++++.+.|+.
T Consensus        20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~   88 (197)
T PRK11207         20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLN   88 (197)
T ss_pred             HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChh
Confidence            44555554  34568999999999999999998753   999999999999999998877 43      56888888854


Q ss_pred             hhhHHHhhhccCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                      +    +..   .++||+|+++.++||+...     ....++.++|+|.
T Consensus        89 ~----~~~---~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~  129 (197)
T PRK11207         89 N----LTF---DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGY  129 (197)
T ss_pred             h----CCc---CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence            3    111   2569999999999987632     3444777788874

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.57  E-value=1.9e-14  Score=93.18  Aligned_cols=113  Identities=19%  Similarity=0.205  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEE
Q psy5757          13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVA   91 (139)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~   91 (139)
                      ..+...+...+.  ..+++++||+|||+|..+..+++..+ .++++++|+++.+++.+++++.. +.      .+++++.
T Consensus         5 ~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~   75 (124)
T TIGR02469         5 REVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGV------SNIVIVE   75 (124)
T ss_pred             HHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEe
Confidence            334455555553  45678999999999999999999874 47999999999999999999877 43      6788888


Q ss_pred             ccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCCC
Q psy5757          92 LGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGSY  139 (139)
Q Consensus        92 ~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~~  139 (139)
                      +|+.+....     ..++||+|++....+.........++.++|+|.+
T Consensus        76 ~~~~~~~~~-----~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~l  118 (124)
T TIGR02469        76 GDAPEALED-----SLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRI  118 (124)
T ss_pred             ccccccChh-----hcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEE
Confidence            885532221     1247999999887776666667778888898853

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.56  E-value=2.3e-14  Score=99.82  Aligned_cols=112  Identities=16%  Similarity=0.174  Sum_probs=84.1

Q ss_pred             ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEE
Q psy5757          10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIK   88 (139)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~   88 (139)
                      ++.......+.+.+.  +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.++++... +.      .+++
T Consensus        14 ~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~------~~i~   84 (187)
T PRK08287         14 MTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC------GNID   84 (187)
T ss_pred             CchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC------CCeE
Confidence            334443444555554  5678899999999999999999987 467999999999999999999877 43      5788


Q ss_pred             EEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          89 FVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        89 ~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      ++.+|....     .   .++||+|+++...+.+.+.....++.++|+|.
T Consensus        85 ~~~~d~~~~-----~---~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~  126 (187)
T PRK08287         85 IIPGEAPIE-----L---PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGR  126 (187)
T ss_pred             EEecCchhh-----c---CcCCCEEEECCCccCHHHHHHHHHHhcCCCeE
Confidence            888885321     1   24699999988766655555556777888875

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.56  E-value=1.8e-14  Score=105.76  Aligned_cols=101  Identities=18%  Similarity=0.304  Sum_probs=82.3

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.+|||+|||+|..+..+++..++.++++++|+++.+++.|+++... +.      .+++++.+|+.+    +.  .
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~----l~--~  142 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEA----LP--V  142 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhh----CC--C
Confidence            46889999999999999988888776667899999999999999998876 43      688999998533    22  2


Q ss_pred             cCCceeEEecCccccccccc---eeeeeeeccCCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIP---VCINYTATMPEGSY  139 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p---~~~~~~~~~p~g~~  139 (139)
                      +.++||+|+++.++|+.+++   ....++.++|+|.+
T Consensus       143 ~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l  179 (272)
T PRK11873        143 ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRF  179 (272)
T ss_pred             CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEE
Confidence            34679999999999998865   34558889999853

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.55  E-value=4.2e-15  Score=105.72  Aligned_cols=95  Identities=17%  Similarity=0.249  Sum_probs=78.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||-|.++..+|+...   +|+|+|+++.+++.|+..... +.       ++++.+....+    +..  .
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv-------~i~y~~~~~ed----l~~--~  121 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGV-------NIDYRQATVED----LAS--A  121 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccc-------cccchhhhHHH----HHh--c
Confidence            4789999999999999999999985   999999999999999999887 43       35666666333    321  2


Q ss_pred             CCceeEEecCccccccccceeee---eeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVCIN---YTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g~  138 (139)
                      .++||+|+|..+++|+++|..+.   ...++|+|.
T Consensus       122 ~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~  156 (243)
T COG2227         122 GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGI  156 (243)
T ss_pred             CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcE
Confidence            37899999999999999998554   677888885

>TIGR00740 methyltransferase, putative

Probab=99.55  E-value=2.6e-14  Score=103.09  Aligned_cols=100  Identities=16%  Similarity=0.251  Sum_probs=79.7

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      ..++.+|||+|||+|..+..+++... +.++++++|+++.+++.|++++.. +.     ..+++++++|+.+    +   
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~~----~---  118 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRH----V---  118 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChhh----C---
Confidence            35778999999999999999999763 567999999999999999998876 32     2578999999544    1   


Q ss_pred             ccCCceeEEecCccccccccc-----eeeeeeeccCCCCC
Q psy5757         105 MKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGSY  139 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~~  139 (139)
                       +...+|+|+++.++||+.+.     ....++.++|+|.+
T Consensus       119 -~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l  157 (239)
T TIGR00740       119 -EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVL  157 (239)
T ss_pred             -CCCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEE
Confidence             23458999999999998643     34558888998853

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.55  E-value=1.1e-14  Score=109.19  Aligned_cols=96  Identities=19%  Similarity=0.282  Sum_probs=76.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ++.+|||+|||+|.++..+++..   ++|+|+|+++++++.|+++... ..     ..+++++++|+.+    +..  ..
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~dae~----l~~--~~  196 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTTAEK----LAD--EG  196 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecCHHH----hhh--cc
Confidence            56799999999999999998754   3999999999999999987655 22     2579999999543    222  34


Q ss_pred             CceeEEecCccccccccceeee---eeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPVCIN---YTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g~  138 (139)
                      ++||+|++..++||+.+|....   .+.++|+|.
T Consensus       197 ~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~  230 (322)
T PLN02396        197 RKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGA  230 (322)
T ss_pred             CCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcE
Confidence            6899999999999999885443   777888885

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.55  E-value=3.1e-14  Score=102.46  Aligned_cols=87  Identities=14%  Similarity=0.342  Sum_probs=73.3

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .....+|||+|||+|..+.+++.+.. +++++++|+++++.+.|+++.+. ++     .++++++++|+.+..    ...
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l-----~~ri~v~~~Di~~~~----~~~  111 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPL-----EERIQVIEADIKEFL----KAL  111 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcc-----hhceeEehhhHHHhh----hcc
Confidence            34578999999999999999999985 47999999999999999999998 66     689999999966633    334


Q ss_pred             cCCceeEEecCccccccc
Q psy5757         106 KFDRYDFLPHAPAESWMN  123 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~  123 (139)
                      ...+||+|+|||++.-..
T Consensus       112 ~~~~fD~Ii~NPPyf~~~  129 (248)
T COG4123         112 VFASFDLIICNPPYFKQG  129 (248)
T ss_pred             cccccCEEEeCCCCCCCc
Confidence            456799999999976543

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.54  E-value=7.3e-15  Score=102.91  Aligned_cols=80  Identities=16%  Similarity=0.335  Sum_probs=69.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ....+|+|+|||+|..+..|++++ |.++++|+|.|++|++.|+.++          ++.+|..+|+.+ +.      +.
T Consensus        29 ~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl----------p~~~f~~aDl~~-w~------p~   90 (257)
T COG4106          29 ERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL----------PDATFEEADLRT-WK------PE   90 (257)
T ss_pred             cccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC----------CCCceecccHhh-cC------CC
Confidence            456799999999999999999999 6889999999999999997774          788899999555 32      34


Q ss_pred             CceeEEecCccccccccc
Q psy5757         108 DRYDFLPHAPAESWMNIP  125 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p  125 (139)
                      ...|++++|.+|||+++=
T Consensus        91 ~~~dllfaNAvlqWlpdH  108 (257)
T COG4106          91 QPTDLLFANAVLQWLPDH  108 (257)
T ss_pred             Cccchhhhhhhhhhcccc
Confidence            568999999999999974

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.54  E-value=9.4e-14  Score=95.51  Aligned_cols=93  Identities=14%  Similarity=0.251  Sum_probs=71.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+++.+..  .++.++||+|||+|..+..+++.. +..+++++|+++.+++.+++++.. +.      ++++++..|.
T Consensus        20 t~lL~~~l~~--~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~------~~v~~~~~d~   90 (170)
T PF05175_consen   20 TRLLLDNLPK--HKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGL------ENVEVVQSDL   90 (170)
T ss_dssp             HHHHHHHHHH--HTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTC------TTEEEEESST
T ss_pred             HHHHHHHHhh--ccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCc------cccccccccc
Confidence            3355555553  277899999999999999999988 466799999999999999999998 54      4599999996


Q ss_pred             hhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                      .+.+       +.++||+|++||++|.-.+
T Consensus        91 ~~~~-------~~~~fD~Iv~NPP~~~~~~  113 (170)
T PF05175_consen   91 FEAL-------PDGKFDLIVSNPPFHAGGD  113 (170)
T ss_dssp             TTTC-------CTTCEEEEEE---SBTTSH
T ss_pred             cccc-------cccceeEEEEccchhcccc
Confidence            5422       2468999999999876554

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.54  E-value=2.2e-14  Score=104.11  Aligned_cols=91  Identities=19%  Similarity=0.272  Sum_probs=71.3

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      +..+|||+|||+|..+..+++..   .+++++|+|+.+++.++++..          ...++++|+.+    +  +.+.+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d~~~----~--~~~~~  102 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDA----------ADHYLAGDIES----L--PLATA  102 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC----------CCCEEEcCccc----C--cCCCC
Confidence            46799999999999999988764   399999999999999987642          23567888543    2  12346


Q ss_pred             ceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757         109 RYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus       109 ~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      +||+|+++.++||+.++.   ...++.++|+|.
T Consensus       103 ~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~  135 (251)
T PRK10258        103 TFDLAWSNLAVQWCGNLSTALRELYRVVRPGGV  135 (251)
T ss_pred             cEEEEEECchhhhcCCHHHHHHHHHHHcCCCeE
Confidence            799999999999998874   334778888875

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.52  E-value=9.8e-14  Score=95.56  Aligned_cols=114  Identities=15%  Similarity=0.157  Sum_probs=87.4

Q ss_pred             ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEE
Q psy5757          10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKF   89 (139)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~   89 (139)
                      ++.+++....+..|.  +.++..++|+|||||+.+..++. ..|.++++++|-++++++..++|..+     ++.+|+++
T Consensus        17 ~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~-~~p~~~v~AIe~~~~a~~~~~~N~~~-----fg~~n~~v   88 (187)
T COG2242          17 MTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDEEALELIERNAAR-----FGVDNLEV   88 (187)
T ss_pred             CcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHH-hCCCceEEEEecCHHHHHHHHHHHHH-----hCCCcEEE
Confidence            455555666666775  68999999999999999999994 45789999999999999999999999     33499999


Q ss_pred             EEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          90 VALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      +.+++.+.+++      ..++|.+|.... .-++.-.......++|+|+
T Consensus        89 v~g~Ap~~L~~------~~~~daiFIGGg-~~i~~ile~~~~~l~~ggr  130 (187)
T COG2242          89 VEGDAPEALPD------LPSPDAIFIGGG-GNIEEILEAAWERLKPGGR  130 (187)
T ss_pred             EeccchHhhcC------CCCCCEEEECCC-CCHHHHHHHHHHHcCcCCe
Confidence            99998775542      236899999887 4444444444444455553

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.52  E-value=1.1e-13  Score=97.29  Aligned_cols=102  Identities=18%  Similarity=0.226  Sum_probs=77.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.++||+|||+|.++..+++..++.++++++|+++.+++.++++... ++     ..+++++.+|+.+.+..     
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----~~~v~~~~~d~~~~l~~-----  107 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----LNNIVLIKGEAPEILFT-----  107 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCCeEEEEechhhhHhh-----
Confidence            57889999999999999999998876567999999999999999999887 43     36889999996553321     


Q ss_pred             cCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      ..++||+|+++..............+.++|+|.
T Consensus       108 ~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~  140 (198)
T PRK00377        108 INEKFDRIFIGGGSEKLKEIISASWEIIKKGGR  140 (198)
T ss_pred             cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcE
Confidence            125799999976544444444444666777774

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.52  E-value=6.9e-14  Score=102.36  Aligned_cols=106  Identities=29%  Similarity=0.321  Sum_probs=80.7

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...++..+.  +.++.+|||+|||+|..+..+++...  ++++++|+++.+++.|+++...       ..++.++++|+.
T Consensus        41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~  109 (263)
T PTZ00098         41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDIL  109 (263)
T ss_pred             HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCcc
Confidence            445555553  57889999999999999999987653  4999999999999999987654       257889999964


Q ss_pred             hhhHHHhhhccCCceeEEecCccccccc--cc---eeeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMN--IP---VCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~--~p---~~~~~~~~~p~g~  138 (139)
                      +      .+.+.++||+|++..+++++.  ++   ....++.++|+|.
T Consensus       110 ~------~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~  151 (263)
T PTZ00098        110 K------KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGI  151 (263)
T ss_pred             c------CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcE
Confidence            3      122356899999988877764  33   3444888899885

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.51  E-value=7.1e-14  Score=106.66  Aligned_cols=98  Identities=13%  Similarity=0.174  Sum_probs=74.9

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      +.+|||+|||+|..+..++++. |..+++++|+|+.+++.|++++.. ..   -...+++++..|+.+.+       +.+
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~---~~~~~v~~~~~D~l~~~-------~~~  297 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMP---EALDRCEFMINNALSGV-------EPF  297 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCc---ccCceEEEEEccccccC-------CCC
Confidence            4699999999999999999987 577999999999999999999876 21   00136888888864321       235


Q ss_pred             ceeEEecCcccccccc---c-----eeeeeeeccCCCC
Q psy5757         109 RYDFLPHAPAESWMNI---P-----VCINYTATMPEGS  138 (139)
Q Consensus       109 ~~D~vi~~~~~~~~~~---p-----~~~~~~~~~p~g~  138 (139)
                      +||+|++||+||....   .     ....++.++|+|.
T Consensus       298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~  335 (378)
T PRK15001        298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGE  335 (378)
T ss_pred             CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCE
Confidence            7999999999997531   1     1223677888885

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.51  E-value=5.6e-14  Score=99.17  Aligned_cols=101  Identities=18%  Similarity=0.207  Sum_probs=77.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++.. +.      .++.++++|+.+.+.   ...+
T Consensus        39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~l~---~~~~  108 (202)
T PRK00121         39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVEVLL---DMFP  108 (202)
T ss_pred             CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHHHHH---HHcC
Confidence            367899999999999999999887 456899999999999999999877 43      689999999622222   1223


Q ss_pred             CCceeEEecCcccccccc-----------ceeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNI-----------PVCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~-----------p~~~~~~~~~p~g~  138 (139)
                      .++||+|+++.+.+|...           .....++.++|+|.
T Consensus       109 ~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~  151 (202)
T PRK00121        109 DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGE  151 (202)
T ss_pred             ccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCE
Confidence            467999999877666442           23444778888885

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.50  E-value=9e-14  Score=109.23  Aligned_cols=106  Identities=15%  Similarity=0.245  Sum_probs=82.9

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~   96 (139)
                      ..+++.+.  +.++.+|||+|||+|..+..+++..+  ++++|+|+|+.+++.|+++....      ..+++++++|+.+
T Consensus       256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~  325 (475)
T PLN02336        256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTK  325 (475)
T ss_pred             HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCccc
Confidence            44555543  46778999999999999999998763  48999999999999998876541      2478999999644


Q ss_pred             hhHHHhhhccCCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757          97 RIETVELMMKFDRYDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus        97 ~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                          .  ..+.++||+|++..+++|+.+|..   ..++.++|+|.
T Consensus       326 ----~--~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~  364 (475)
T PLN02336        326 ----K--TYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGK  364 (475)
T ss_pred             ----C--CCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeE
Confidence                1  123467999999999999998754   44889999985

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.49  E-value=5.4e-14  Score=103.35  Aligned_cols=96  Identities=17%  Similarity=0.193  Sum_probs=73.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +++|++|||||||.|.++..++++.+.  +|+|+.+|++..+.+++++.. ++     .+++++...|..+ +.      
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~g~--~v~gitlS~~Q~~~a~~~~~~~gl-----~~~v~v~~~D~~~-~~------  125 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERYGC--HVTGITLSEEQAEYARERIREAGL-----EDRVEVRLQDYRD-LP------  125 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTS-----SSTEEEEES-GGG---------
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCc--EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEeeccc-cC------
Confidence            689999999999999999999999754  999999999999999999998 76     5689999999543 21      


Q ss_pred             cCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                        .+||.|+|-..+.++...     .....+.++|+|.
T Consensus       126 --~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~  161 (273)
T PF02353_consen  126 --GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGR  161 (273)
T ss_dssp             ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEE
T ss_pred             --CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcE
Confidence              379999999999988532     4555788888885

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.49  E-value=7.1e-16  Score=96.82  Aligned_cols=95  Identities=15%  Similarity=0.290  Sum_probs=58.4

Q ss_pred             EEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeE
Q psy5757          34 LEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDF  112 (139)
Q Consensus        34 LdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~  112 (139)
                      ||+|||+|.++..+.+.. +..+++++|+|+.+++.+++++.. ..      .+......+..+...    ....++||+
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~~~----~~~~~~fD~   69 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGN------DNFERLRFDVLDLFD----YDPPESFDL   69 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS-------CCC----SE
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC------cceeEEEeecCChhh----cccccccce
Confidence            799999999999999997 567999999999999888888877 32      344444333222111    112258999


Q ss_pred             EecCccccccccce---eeeeeeccCCCCC
Q psy5757         113 LPHAPAESWMNIPV---CINYTATMPEGSY  139 (139)
Q Consensus       113 vi~~~~~~~~~~p~---~~~~~~~~p~g~~  139 (139)
                      |++..++||+.++.   ...+..++|+|.+
T Consensus        70 V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   70 VVASNVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             EEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             ehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            99999999997664   4448889999853

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.49  E-value=4.4e-14  Score=89.07  Aligned_cols=92  Identities=15%  Similarity=0.334  Sum_probs=67.1

Q ss_pred             EEEEcccCChhHHHHHHHc--CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          33 VLEIGSGSGYLTNMISELM--NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        33 iLdiG~G~G~~~~~l~~~~--~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      |||+|||+|..+..+++..  ++..+++++|+|+++++.++++... +       .+++++++|+.+ ++   .  ...+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-------~~~~~~~~D~~~-l~---~--~~~~   67 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-------PKVRFVQADARD-LP---F--SDGK   67 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-------TTSEEEESCTTC-HH---H--HSSS
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-------CceEEEECCHhH-Cc---c--cCCC
Confidence            7999999999999999987  2335999999999999999999876 2       378999999766 33   2  3568


Q ss_pred             eeEEec-Cccccccccce-----eeeeeeccCCC
Q psy5757         110 YDFLPH-APAESWMNIPV-----CINYTATMPEG  137 (139)
Q Consensus       110 ~D~vi~-~~~~~~~~~p~-----~~~~~~~~p~g  137 (139)
                      ||+|++ ..++|++.+..     ....+.+.|+|
T Consensus        68 ~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   68 FDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             eeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            999999 55588876543     23355555554

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.49  E-value=1.5e-13  Score=96.42  Aligned_cols=101  Identities=12%  Similarity=0.104  Sum_probs=79.3

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ...++||+|||+|..+..+++.. |..+++|+|+++.+++.|++++.. ++      .|++++++|+.+....   ..+.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~---~~~~   85 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDK---FFPD   85 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHh---hCCC
Confidence            55689999999999999999987 577999999999999999998877 54      6999999997653321   1234


Q ss_pred             CceeEEecCccccccccc-----------eeeeeeeccCCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIP-----------VCINYTATMPEGSY  139 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p-----------~~~~~~~~~p~g~~  139 (139)
                      +++|.|+++.+.+|....           .....+.++|+|.+
T Consensus        86 ~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l  128 (194)
T TIGR00091        86 GSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVI  128 (194)
T ss_pred             CceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEE
Confidence            579999999887775432           33457888888853

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.48  E-value=2.2e-13  Score=98.18  Aligned_cols=97  Identities=16%  Similarity=0.213  Sum_probs=77.3

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ..+.+..+.. ..+.++|||+|||+|+.+..+++..++.++++++|+++++++.|+++++. ++     ..+++++.+|+
T Consensus        56 ~g~~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----~~~i~~~~gda  129 (234)
T PLN02781         56 EGLFLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----DHKINFIQSDA  129 (234)
T ss_pred             HHHHHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEccH
Confidence            3455555552 55678999999999999999999886678999999999999999999998 65     46899999998


Q ss_pred             hhhhHHHhhhccCCceeEEecCcc
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      .+.+..+....+.++||+|+....
T Consensus       130 ~~~L~~l~~~~~~~~fD~VfiDa~  153 (234)
T PLN02781        130 LSALDQLLNNDPKPEFDFAFVDAD  153 (234)
T ss_pred             HHHHHHHHhCCCCCCCCEEEECCC
Confidence            886665432222457999998864

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.48  E-value=1.5e-13  Score=100.54  Aligned_cols=96  Identities=16%  Similarity=0.174  Sum_probs=80.7

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +++|+++||||||-|.++..+|++.+.  +|+|+++|+++.+.+++++.. ++     ..+++++..|..+    +    
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y~v--~V~GvTlS~~Q~~~~~~r~~~~gl-----~~~v~v~l~d~rd----~----  134 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEYGV--TVVGVTLSEEQLAYAEKRIAARGL-----EDNVEVRLQDYRD----F----  134 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHcCC--EEEEeeCCHHHHHHHHHHHHHcCC-----CcccEEEeccccc----c----
Confidence            789999999999999999999999843  999999999999999999988 77     4689999998443    2    


Q ss_pred             cCCceeEEecCcccccccc-----ceeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNI-----PVCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~-----p~~~~~~~~~p~g~  138 (139)
                       .++||-|+|-..|+++-.     .....+..++|+|.
T Consensus       135 -~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~  171 (283)
T COG2230         135 -EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGR  171 (283)
T ss_pred             -ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCce
Confidence             244999999999888764     34555778888875

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.48  E-value=3.8e-13  Score=99.49  Aligned_cols=103  Identities=14%  Similarity=0.206  Sum_probs=76.5

Q ss_pred             hhcccccChHHHHHHHHHhcccC--CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHL--NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARL   81 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~   81 (139)
                      ..+..++.+.....+...+...+  .++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.|++++.. +.   
T Consensus        95 ~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~---  170 (284)
T TIGR03533        95 DERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGL---  170 (284)
T ss_pred             CCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC---
Confidence            34566676664444444333222  345789999999999999999987 466999999999999999999987 44   


Q ss_pred             ccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          82 LTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        82 ~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                        ..+++++++|+.+.+       +.++||+|++||++.
T Consensus       171 --~~~i~~~~~D~~~~~-------~~~~fD~Iv~NPPy~  200 (284)
T TIGR03533       171 --EDRVTLIQSDLFAAL-------PGRKYDLIVSNPPYV  200 (284)
T ss_pred             --CCcEEEEECchhhcc-------CCCCccEEEECCCCC
Confidence              257999999964421       234799999999843

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.48  E-value=1.4e-13  Score=96.69  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=76.0

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      ..+.+.+.  ..++.+|||+|||+|..+..++++..   +|+++|+|+.+++.++++... ++       ++++...|+.
T Consensus        20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~   87 (195)
T TIGR00477        20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENL-------PLRTDAYDIN   87 (195)
T ss_pred             HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccch
Confidence            34445553  34567999999999999999998753   999999999999999988766 33       3666667743


Q ss_pred             hhhHHHhhhccCCceeEEecCcccccccc-----ceeeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMNI-----PVCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~-----p~~~~~~~~~p~g~  138 (139)
                      . +.   .   .++||+|+++.++|++..     .....++.++|+|.
T Consensus        88 ~-~~---~---~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  128 (195)
T TIGR00477        88 A-AA---L---NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGY  128 (195)
T ss_pred             h-cc---c---cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcE
Confidence            2 11   1   246999999999998853     23444777788884

Part of a tellurite-reducing operon tehA and tehB

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.48  E-value=3.1e-13  Score=101.31  Aligned_cols=101  Identities=20%  Similarity=0.345  Sum_probs=79.8

Q ss_pred             ccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCc
Q psy5757           8 AAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGH   86 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~   86 (139)
                      +..+.+....++++.+.  ++++.+|||+|||+|..+..+++..+..++|+++|+++++++.|+++++. +.      ++
T Consensus        61 ~~~~~p~l~a~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~n  132 (322)
T PRK13943         61 STSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------EN  132 (322)
T ss_pred             ccCCcHHHHHHHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------Cc
Confidence            35556777788888775  57889999999999999999999886556899999999999999999887 44      78


Q ss_pred             EEEEEccchhhhHHHhhhccCCceeEEecCcccccc
Q psy5757          87 IKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus        87 i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~  122 (139)
                      ++++++|+.+.+.      ....||+|++....+.+
T Consensus       133 V~~i~gD~~~~~~------~~~~fD~Ii~~~g~~~i  162 (322)
T PRK13943        133 VIFVCGDGYYGVP------EFAPYDVIFVTVGVDEV  162 (322)
T ss_pred             EEEEeCChhhccc------ccCCccEEEECCchHHh
Confidence            9999999655332      12469999987654443

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=4.9e-14  Score=103.87  Aligned_cols=121  Identities=18%  Similarity=0.216  Sum_probs=86.6

Q ss_pred             hhhcccccCh--HHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccc
Q psy5757           4 VKIGAAIGGI--SAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNAR   80 (139)
Q Consensus         4 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~   80 (139)
                      +.+|..|.+.  ..+..+++++.+..++++++||+|||||.++.+.++....  +++|+|++|.+++.|++|+.. +.  
T Consensus       135 lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v--  210 (300)
T COG2264         135 LDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGV--  210 (300)
T ss_pred             EccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCC--
Confidence            3455555432  2467888888888899999999999999999999998853  899999999999999999988 33  


Q ss_pred             cccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          81 LLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        81 ~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                         ...++....+..+       .....+||+|++|..=+-+.......++.++|+|.
T Consensus       211 ---~~~~~~~~~~~~~-------~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~  258 (300)
T COG2264         211 ---ELLVQAKGFLLLE-------VPENGPFDVIVANILAEVLVELAPDIKRLLKPGGR  258 (300)
T ss_pred             ---chhhhcccccchh-------hcccCcccEEEehhhHHHHHHHHHHHHHHcCCCce
Confidence               1112222222111       11235899999999644444555566778888775

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=2.7e-13  Score=100.03  Aligned_cols=98  Identities=15%  Similarity=0.258  Sum_probs=72.6

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCC-eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENS-KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL   82 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~   82 (139)
                      +.++.++++. +..+++.+........ +|||+|||||..+..++... +.+.|+++|+|+.+++.|++|+.. ++    
T Consensus        86 ~~~vliPr~d-Te~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l----  159 (280)
T COG2890          86 DEGVLIPRPD-TELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGL----  159 (280)
T ss_pred             CCCceecCCc-hHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCC----
Confidence            4466777777 3444444221222223 79999999999999999999 467999999999999999999998 43    


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCceeEEecCcc
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                        .++.++.+|..+.+        .++||+|++||+
T Consensus       160 --~~~~~~~~dlf~~~--------~~~fDlIVsNPP  185 (280)
T COG2890         160 --VRVLVVQSDLFEPL--------RGKFDLIVSNPP  185 (280)
T ss_pred             --ccEEEEeeeccccc--------CCceeEEEeCCC
Confidence              56666666743321        238999999998

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.47  E-value=5e-14  Score=104.30  Aligned_cols=117  Identities=18%  Similarity=0.205  Sum_probs=78.8

Q ss_pred             hhhcccccCh--HHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccc
Q psy5757           4 VKIGAAIGGI--SAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNAR   80 (139)
Q Consensus         4 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~   80 (139)
                      +.+|..|.+.  ..+..+++++.....++++|||+|||||.++...++.+..  +|+++|++|.+++.|++|+.. +.  
T Consensus       134 idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~--  209 (295)
T PF06325_consen  134 IDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGV--  209 (295)
T ss_dssp             ESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT---
T ss_pred             ECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCC--
Confidence            4566666533  2466788888877789999999999999999999998753  899999999999999999998 55  


Q ss_pred             cccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCC
Q psy5757          81 LLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEG  137 (139)
Q Consensus        81 ~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g  137 (139)
                         ..++.+.  ...        .....+||+|++|...+-+..........++|+|
T Consensus       210 ---~~~~~v~--~~~--------~~~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G  253 (295)
T PF06325_consen  210 ---EDRIEVS--LSE--------DLVEGKFDLVVANILADVLLELAPDIASLLKPGG  253 (295)
T ss_dssp             ---TTCEEES--CTS--------CTCCS-EEEEEEES-HHHHHHHHHHCHHHEEEEE
T ss_pred             ---CeeEEEE--Eec--------ccccccCCEEEECCCHHHHHHHHHHHHHhhCCCC
Confidence               3455442  111        1123779999999875444333333333334433

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.47  E-value=1.5e-13  Score=101.75  Aligned_cols=108  Identities=17%  Similarity=0.137  Sum_probs=80.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      +..+++.+.....++++|||+|||+|.++..+++...  .+++++|+++.+++.|+++... +.     ..++.....+.
T Consensus       146 t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~-----~~~~~~~~~~~  218 (288)
T TIGR00406       146 TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQV-----SDRLQVKLIYL  218 (288)
T ss_pred             HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEeccc
Confidence            4455566654457889999999999999998887543  3899999999999999999887 43     23455665542


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      ..        ...++||+|++|...+.+.......++.++|+|.
T Consensus       219 ~~--------~~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~  254 (288)
T TIGR00406       219 EQ--------PIEGKADVIVANILAEVIKELYPQFSRLVKPGGW  254 (288)
T ss_pred             cc--------ccCCCceEEEEecCHHHHHHHHHHHHHHcCCCcE
Confidence            11        1235799999998877666655666888888885

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK08317 hypothetical protein; Provisional

Probab=99.47  E-value=4e-13  Score=95.90  Aligned_cols=107  Identities=14%  Similarity=0.248  Sum_probs=81.9

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      .+.+.+.  +.++.+|||+|||+|.++..+++...+.++++++|+++.+++.++++....      ..+++++.+|+.+ 
T Consensus        10 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~~d~~~-   80 (241)
T PRK08317         10 RTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVRGDADG-   80 (241)
T ss_pred             HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEeccccc-
Confidence            3444443  577889999999999999999998855679999999999999998873221      2678888888543 


Q ss_pred             hHHHhhhccCCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757          98 IETVELMMKFDRYDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                      +     +.+.++||+|+++.+++++.++..   ..++.++|+|.
T Consensus        81 ~-----~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~  119 (241)
T PRK08317         81 L-----PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGR  119 (241)
T ss_pred             C-----CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcE
Confidence            1     123467999999999999988643   33677777774

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.46  E-value=8.2e-13  Score=85.00  Aligned_cols=82  Identities=17%  Similarity=0.218  Sum_probs=65.7

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      |.+|||+|||+|.++..+++..  ..+++++|+++..++.++.++.. +.     .++++++++|..+..    ...+..
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~~~~----~~~~~~   69 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDARDLP----EPLPDG   69 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHHHHH----HTCTTT
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchhhch----hhccCc
Confidence            4689999999999999999998  34999999999999999999988 44     468999999965532    233467


Q ss_pred             ceeEEecCcccccc
Q psy5757         109 RYDFLPHAPAESWM  122 (139)
Q Consensus       109 ~~D~vi~~~~~~~~  122 (139)
                      +||+|++|++++..
T Consensus        70 ~~D~Iv~npP~~~~   83 (117)
T PF13659_consen   70 KFDLIVTNPPYGPR   83 (117)
T ss_dssp             -EEEEEE--STTSB
T ss_pred             eeEEEEECCCCccc
Confidence            89999999998743

...

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.46  E-value=3.1e-13  Score=101.51  Aligned_cols=97  Identities=18%  Similarity=0.220  Sum_probs=73.8

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++++|||+|||+|.++..++.....  +|+|+|.|+.++..++..... +.     ..+++++.+|+.+    ++.   
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~-----~~~i~~~~~d~e~----lp~---  186 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGN-----DQRAHLLPLGIEQ----LPA---  186 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCC-----CCCeEEEeCCHHH----CCC---
Confidence            46789999999999999999998642  699999999888765433222 11     2578999998543    322   


Q ss_pred             CCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      .++||+|++..++||+.+|.   ...++.++|+|.
T Consensus       187 ~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~  221 (322)
T PRK15068        187 LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGE  221 (322)
T ss_pred             cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcE
Confidence            46799999999999999885   344888888885

>KOG1270|consensus

Probab=99.45  E-value=7.2e-14  Score=100.42  Aligned_cols=94  Identities=19%  Similarity=0.320  Sum_probs=74.0

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCC----cEEEEEccchhhhHHHhhh
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDG----HIKFVALGMIKRIETVELM  104 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~----~i~~~~~d~~~~~~~~~~~  104 (139)
                      |++|||+|||+|.++..|++...   +|+|+|+++.+++.|++.... ..   + ..    ++.+.+.++.+        
T Consensus        90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~---~-~~~~~y~l~~~~~~~E~--------  154 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPV---L-EGAIAYRLEYEDTDVEG--------  154 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCch---h-ccccceeeehhhcchhh--------
Confidence            48899999999999999999886   999999999999999998543 21   1 12    24455555222        


Q ss_pred             ccCCceeEEecCccccccccceeee---eeeccCCCCC
Q psy5757         105 MKFDRYDFLPHAPAESWMNIPVCIN---YTATMPEGSY  139 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g~~  139 (139)
                       ..++||+|++..+++|+.+|..+.   .+.++|+|++
T Consensus       155 -~~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~l  191 (282)
T KOG1270|consen  155 -LTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRL  191 (282)
T ss_pred             -cccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCce
Confidence             235699999999999999997665   7888898874

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.45  E-value=2.9e-13  Score=102.03  Aligned_cols=96  Identities=19%  Similarity=0.203  Sum_probs=77.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++.+|||+|||+|..+..+++..+ ..+++++|+++++++.|+++...        .+++++.+|+.+    +  +.+.
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~----l--p~~~  176 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAED----L--PFPT  176 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHh----C--CCCC
Confidence            4678999999999999999998873 45999999999999999887543        567888898543    2  2235


Q ss_pred             CceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      ++||+|+++.++|++.++.   ...++.++|+|.
T Consensus       177 ~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~  210 (340)
T PLN02490        177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK  210 (340)
T ss_pred             CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcE
Confidence            6799999999999988874   334788888885

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.45  E-value=2.5e-13  Score=102.68  Aligned_cols=104  Identities=16%  Similarity=0.161  Sum_probs=76.1

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      ..+++.+..  ....+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++.. +.       +.+++..|+.
T Consensus       186 ~lLl~~l~~--~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l-------~~~~~~~D~~  255 (342)
T PRK09489        186 QLLLSTLTP--HTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL-------EGEVFASNVF  255 (342)
T ss_pred             HHHHHhccc--cCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-------CCEEEEcccc
Confidence            344444432  234589999999999999999987 466999999999999999999887 32       3456667754


Q ss_pred             hhhHHHhhhccCCceeEEecCcccccccc--------ceeeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMNI--------PVCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~--------p~~~~~~~~~p~g~  138 (139)
                      +.        ..++||+|++|++||+..+        ......+.++|+|.
T Consensus       256 ~~--------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~  298 (342)
T PRK09489        256 SD--------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGE  298 (342)
T ss_pred             cc--------cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCE
Confidence            31        1357999999999997432        12333667888885

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.45  E-value=5e-13  Score=92.46  Aligned_cols=80  Identities=19%  Similarity=0.219  Sum_probs=65.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++.+|||+|||+|..+..+++...   +++++|+++.+++.+++++....      .+++++.+|..+.        ..
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~--------~~   80 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNN------VGLDVVMTDLFKG--------VR   80 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcC------CceEEEEcccccc--------cC
Confidence            4557899999999999999999764   89999999999999999987621      3578888885431        13


Q ss_pred             CceeEEecCcccccccc
Q psy5757         108 DRYDFLPHAPAESWMNI  124 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~  124 (139)
                      ++||+|++|+++|...+
T Consensus        81 ~~fD~Vi~n~p~~~~~~   97 (179)
T TIGR00537        81 GKFDVILFNPPYLPLED   97 (179)
T ss_pred             CcccEEEECCCCCCCcc
Confidence            47999999999886654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.45  E-value=3.4e-13  Score=96.40  Aligned_cols=106  Identities=17%  Similarity=0.295  Sum_probs=78.9

Q ss_pred             HHHHHHhcccC-CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHL-NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~-~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ..+++.+.... ..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++...         +++.++.+|+.
T Consensus        21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~   90 (240)
T TIGR02072        21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAE   90 (240)
T ss_pred             HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchh
Confidence            34444444211 344789999999999999999987 46689999999999998887642         36788888854


Q ss_pred             hhhHHHhhhccCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      +    .  ..+.++||+|+++.++||..++...   .++.++|+|.
T Consensus        91 ~----~--~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~  130 (240)
T TIGR02072        91 K----L--PLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGL  130 (240)
T ss_pred             h----C--CCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcE
Confidence            3    2  1234679999999999999887533   3677788874

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.44  E-value=8.5e-13  Score=93.32  Aligned_cols=80  Identities=16%  Similarity=0.254  Sum_probs=64.8

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .+.++.+|||+|||+|..+..+++.. +..+++|+|+|+++++.|+++.          +++.+.++|+.+       ..
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~----------~~~~~~~~d~~~-------~~  101 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL----------PNINIIQGSLFD-------PF  101 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC----------CCCcEEEeeccC-------CC
Confidence            35677899999999999999999876 3459999999999999998764          345677787543       12


Q ss_pred             cCCceeEEecCccccccc
Q psy5757         106 KFDRYDFLPHAPAESWMN  123 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~  123 (139)
                      +.++||+|+++.++||+.
T Consensus       102 ~~~sfD~V~~~~vL~hl~  119 (204)
T TIGR03587       102 KDNFFDLVLTKGVLIHIN  119 (204)
T ss_pred             CCCCEEEEEECChhhhCC
Confidence            356899999999998885

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PHA03412 putative methyltransferase; Provisional

Probab=99.44  E-value=7.1e-13  Score=94.86  Aligned_cols=98  Identities=12%  Similarity=0.160  Sum_probs=76.2

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMN--STGQVIGIEHVPQLVNSSIQNILHSNARLL   82 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~--~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~   82 (139)
                      +.|+++++.+++..+....    ..+.+|||+|||+|.++..++++..  +..+++++|+++.+++.|+++.        
T Consensus        29 ~~GqFfTP~~iAr~~~i~~----~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------   96 (241)
T PHA03412         29 ELGAFFTPIGLARDFTIDA----CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------   96 (241)
T ss_pred             cCCccCCCHHHHHHHHHhc----cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------
Confidence            4688999998777664321    3367999999999999999998752  2458999999999999999774        


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                        .+++++.+|+.+. .      ...+||+||+||+++-..
T Consensus        97 --~~~~~~~~D~~~~-~------~~~~FDlIIsNPPY~~~~  128 (241)
T PHA03412         97 --PEATWINADALTT-E------FDTLFDMAISNPPFGKIK  128 (241)
T ss_pred             --cCCEEEEcchhcc-c------ccCCccEEEECCCCCCcc
Confidence              4577888886541 1      134799999999988755

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.44  E-value=1e-12  Score=98.18  Aligned_cols=102  Identities=14%  Similarity=0.220  Sum_probs=75.3

Q ss_pred             hhcccccChHHHHHHHHHhcccCC-C-CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLN-E-NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARL   81 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~   81 (139)
                      ..+..++.+.....+...+...++ . ..+|||+|||+|..+..++... +..+++++|+|+.+++.|+++++. +.   
T Consensus       107 ~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l---  182 (307)
T PRK11805        107 DERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGL---  182 (307)
T ss_pred             CCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC---
Confidence            345666666654444433332222 2 2689999999999999999987 466999999999999999999987 44   


Q ss_pred             ccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccc
Q psy5757          82 LTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAE  119 (139)
Q Consensus        82 ~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~  119 (139)
                        ..+++++++|+.+.+       +.++||+|++||++
T Consensus       183 --~~~i~~~~~D~~~~l-------~~~~fDlIvsNPPy  211 (307)
T PRK11805        183 --EDRVTLIESDLFAAL-------PGRRYDLIVSNPPY  211 (307)
T ss_pred             --CCcEEEEECchhhhC-------CCCCccEEEECCCC
Confidence              256999999964422       23579999999874

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.44  E-value=3.8e-13  Score=95.04  Aligned_cols=97  Identities=20%  Similarity=0.281  Sum_probs=78.7

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ..+++..+.. ..+.++||||||++|+-+..+++..++.++++++|.+++..+.|++++++ ++     .++++++.+|+
T Consensus        33 ~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~~~gda  106 (205)
T PF01596_consen   33 TGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEVIEGDA  106 (205)
T ss_dssp             HHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEEEES-H
T ss_pred             HHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEEEEecc
Confidence            4455555553 45668999999999999999999997789999999999999999999998 66     47899999999


Q ss_pred             hhhhHHHhhhccCCceeEEecCcc
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      .+.+.++....+.++||+||....
T Consensus       107 ~~~l~~l~~~~~~~~fD~VFiDa~  130 (205)
T PF01596_consen  107 LEVLPELANDGEEGQFDFVFIDAD  130 (205)
T ss_dssp             HHHHHHHHHTTTTTSEEEEEEEST
T ss_pred             HhhHHHHHhccCCCceeEEEEccc
Confidence            887776654433468999998876

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00452 methyltransferase, putative

Probab=99.43  E-value=6.3e-13  Score=99.37  Aligned_cols=97  Identities=16%  Similarity=0.171  Sum_probs=72.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++++|||+|||+|.++..++.....  .++|+|.|+.++..++..-.. ..     ..++++...++    +++..   
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~-----~~~v~~~~~~i----e~lp~---  185 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDN-----DKRAILEPLGI----EQLHE---  185 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhcc-----CCCeEEEECCH----HHCCC---
Confidence            56789999999999999998887632  799999999998765432222 11     25677888774    33321   


Q ss_pred             CCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      ..+||+|+++.+++|+.+|...   .++.++|+|.
T Consensus       186 ~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~  220 (314)
T TIGR00452       186 LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGE  220 (314)
T ss_pred             CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCE
Confidence            2479999999999999988533   3788889885

Known examples to date are restricted to the proteobacteria.

>PLN02476 O-methyltransferase

Probab=99.43  E-value=8.5e-13  Score=96.89  Aligned_cols=97  Identities=10%  Similarity=0.128  Sum_probs=78.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ..+.+..+.. ..+.++|||+|+++|+.+..+++..++.++++++|.+++..+.|++++++ +.     .++++++.+|+
T Consensus       106 ~g~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----~~~I~li~GdA  179 (278)
T PLN02476        106 QAQLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----SHKVNVKHGLA  179 (278)
T ss_pred             HHHHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCH
Confidence            4455555542 55678999999999999999999887778999999999999999999998 76     46899999999


Q ss_pred             hhhhHHHhhhccCCceeEEecCcc
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      .+.++.+..+...++||+||....
T Consensus       180 ~e~L~~l~~~~~~~~FD~VFIDa~  203 (278)
T PLN02476        180 AESLKSMIQNGEGSSYDFAFVDAD  203 (278)
T ss_pred             HHHHHHHHhcccCCCCCEEEECCC
Confidence            887765432222457999999886

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.43  E-value=2e-12  Score=94.44  Aligned_cols=97  Identities=19%  Similarity=0.296  Sum_probs=79.2

Q ss_pred             hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757           5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT   83 (139)
Q Consensus         5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~   83 (139)
                      ++|+ ++..+.+...+.+.+.  +.++.+|||+|||+|.++..+++...   +++++|+++.+++.+++++..       
T Consensus         6 ~~GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~-------   73 (258)
T PRK14896          6 KLGQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA-------   73 (258)
T ss_pred             cCCccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc-------
Confidence            5678 4467778888888875  56788999999999999999999853   899999999999999988754       


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      ..+++++++|+.+ +.       ...+|.|++|++++.
T Consensus        74 ~~~v~ii~~D~~~-~~-------~~~~d~Vv~NlPy~i  103 (258)
T PRK14896         74 AGNVEIIEGDALK-VD-------LPEFNKVVSNLPYQI  103 (258)
T ss_pred             CCCEEEEEecccc-CC-------chhceEEEEcCCccc
Confidence            3689999999654 21       234799999999775

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.42  E-value=1.8e-12  Score=99.64  Aligned_cols=103  Identities=15%  Similarity=0.202  Sum_probs=76.6

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccC
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTD   84 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~   84 (139)
                      ..+..++++. ...+.+.+...+.++.++||+|||+|..+..++... +.++++++|+|+.+++.|+++++...      
T Consensus       228 ~p~vLIPRpe-TE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g------  299 (423)
T PRK14966        228 NPNVLIPRPE-TEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLG------  299 (423)
T ss_pred             CCCccCCCcc-HHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC------
Confidence            3455666665 455555554445667799999999999999999876 45699999999999999999987721      


Q ss_pred             CcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          85 GHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        85 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      .+++++++|+.+..    .+ ..++||+|++||+..
T Consensus       300 ~rV~fi~gDl~e~~----l~-~~~~FDLIVSNPPYI  330 (423)
T PRK14966        300 ARVEFAHGSWFDTD----MP-SEGKWDIIVSNPPYI  330 (423)
T ss_pred             CcEEEEEcchhccc----cc-cCCCccEEEECCCCC
Confidence            37899999964411    11 124799999999853

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.41  E-value=4.1e-13  Score=95.76  Aligned_cols=95  Identities=18%  Similarity=0.123  Sum_probs=76.0

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      ++|||+|||+|..+..+++.. +.++++++|+|+++++.+++++.. ++     ..+++++..|+.+. +      ..++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~~~~-~------~~~~   67 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDSAKD-P------FPDT   67 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEecccccC-C------CCCC
Confidence            479999999999999999987 356999999999999999999877 54     46789999885431 1      1257


Q ss_pred             eeEEecCcccccccccee---eeeeeccCCCC
Q psy5757         110 YDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus       110 ~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                      ||+|++...+|++.++..   ..++.++|+|.
T Consensus        68 fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~   99 (224)
T smart00828       68 YDLVFGFEVIHHIKDKMDLFSNISRHLKDGGH   99 (224)
T ss_pred             CCEeehHHHHHhCCCHHHHHHHHHHHcCCCCE
Confidence            999999999999887533   33677888874

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.41  E-value=2.8e-12  Score=95.19  Aligned_cols=99  Identities=22%  Similarity=0.318  Sum_probs=80.0

Q ss_pred             hhcccc-cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757           5 KIGAAI-GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL   82 (139)
Q Consensus         5 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~   82 (139)
                      ++|+.| ..+.++.++++.+.  +.++.+|||+|||+|.++..+++...   +++++|+|+.+++.+++++.. +.    
T Consensus        13 ~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~----   83 (294)
T PTZ00338         13 KFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPL----   83 (294)
T ss_pred             CCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCC----
Confidence            457744 67778888888775  57888999999999999999999764   899999999999999998876 32    


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                       .++++++++|+.+ .       ....+|+|++|++++.
T Consensus        84 -~~~v~ii~~Dal~-~-------~~~~~d~VvaNlPY~I  113 (294)
T PTZ00338         84 -ASKLEVIEGDALK-T-------EFPYFDVCVANVPYQI  113 (294)
T ss_pred             -CCcEEEEECCHhh-h-------cccccCEEEecCCccc
Confidence             3789999999654 1       1235899999998653

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.41  E-value=1.5e-12  Score=103.12  Aligned_cols=79  Identities=18%  Similarity=0.314  Sum_probs=64.9

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      +.+|||+|||+|..+..++... +.++++++|+|+.+++.|++++.. ++     ..+++++.+|+.+.+       +.+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l-----~~~v~~~~~D~~~~~-------~~~  205 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEV-----TDRIQIIHSNWFENI-------EKQ  205 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCC-----ccceeeeecchhhhC-------cCC
Confidence            4689999999999999999887 467999999999999999999887 44     357899999964321       235


Q ss_pred             ceeEEecCccccc
Q psy5757         109 RYDFLPHAPAESW  121 (139)
Q Consensus       109 ~~D~vi~~~~~~~  121 (139)
                      +||+|++||++..
T Consensus       206 ~fDlIvsNPPYi~  218 (506)
T PRK01544        206 KFDFIVSNPPYIS  218 (506)
T ss_pred             CccEEEECCCCCC
Confidence            7999999998554

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.40  E-value=2.7e-12  Score=88.09  Aligned_cols=87  Identities=21%  Similarity=0.174  Sum_probs=69.0

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~   96 (139)
                      .++.+.+.  ..++.++||+|||+|.++..++++..   +++++|+++.+++.+++++..       ..+++++.+|+.+
T Consensus         3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~   70 (169)
T smart00650        3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALK   70 (169)
T ss_pred             HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhc
Confidence            44555554  46778999999999999999999843   999999999999999988754       3689999999765


Q ss_pred             hhHHHhhhccCCceeEEecCccccc
Q psy5757          97 RIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        97 ~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      . .   .  +..++|.|++|+++|.
T Consensus        71 ~-~---~--~~~~~d~vi~n~Py~~   89 (169)
T smart00650       71 F-D---L--PKLQPYKVVGNLPYNI   89 (169)
T ss_pred             C-C---c--cccCCCEEEECCCccc
Confidence            2 1   1  2235899999999874

>PRK06922 hypothetical protein; Provisional

Probab=99.40  E-value=6.4e-13  Score=106.46  Aligned_cols=101  Identities=13%  Similarity=0.221  Sum_probs=77.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++.+|||+|||+|..+..+++.. +.++++|+|+|+.+++.|+++.....      .+++++++|+.+ ++   ...+.
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~d-Lp---~~fed  485 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAIN-LS---SSFEK  485 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHh-Cc---cccCC
Confidence            467899999999999999999887 57799999999999999998865511      467888898654 22   11235


Q ss_pred             CceeEEecCcccccccc-------------c---eeeeeeeccCCCCC
Q psy5757         108 DRYDFLPHAPAESWMNI-------------P---VCINYTATMPEGSY  139 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~-------------p---~~~~~~~~~p~g~~  139 (139)
                      ++||+|++++++||+.+             +   ....++.++|+|.+
T Consensus       486 eSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrL  533 (677)
T PRK06922        486 ESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRI  533 (677)
T ss_pred             CCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEE
Confidence            67999999999997632             1   23337888998853

>KOG1540|consensus

Probab=99.40  E-value=1.5e-12  Score=93.40  Aligned_cols=103  Identities=17%  Similarity=0.202  Sum_probs=84.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCC-----ceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHH
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNST-----GQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETV  101 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~-----~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~  101 (139)
                      .+++++||++||||..+..+.+..+..     ++|+..|++|++++.++++..+ ++   ....++.|+.+|+.+    +
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l---~~~~~~~w~~~dAE~----L  171 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL---KASSRVEWVEGDAED----L  171 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC---CcCCceEEEeCCccc----C
Confidence            567899999999999999999998653     7999999999999999999866 44   233459999999655    2


Q ss_pred             hhhccCCceeEEecCccccccccce---eeeeeeccCCCCC
Q psy5757         102 ELMMKFDRYDFLPHAPAESWMNIPV---CINYTATMPEGSY  139 (139)
Q Consensus       102 ~~~~~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~~  139 (139)
                        +.+++++|...+...+.-++++.   ...|++++|+|.+
T Consensus       172 --pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf  210 (296)
T KOG1540|consen  172 --PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRF  210 (296)
T ss_pred             --CCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEE
Confidence              34578899998888877767664   5559999999964

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.40  E-value=6.7e-13  Score=96.49  Aligned_cols=102  Identities=17%  Similarity=0.125  Sum_probs=75.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+++.+.....++.+|||+|||+|.++..+++...  .+++++|+|+.+++.|++++.. ++     ..++++..+| 
T Consensus       106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~-----~~~~~~~~~~-  177 (250)
T PRK00517        106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGV-----ELNVYLPQGD-  177 (250)
T ss_pred             HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCC-----CceEEEccCC-
Confidence            4556666665567889999999999999988777543  2699999999999999999877 32     1333332222 


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                                   .+||+|++|...+.+.......++.++|+|.
T Consensus       178 -------------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~  208 (250)
T PRK00517        178 -------------LKADVIVANILANPLLELAPDLARLLKPGGR  208 (250)
T ss_pred             -------------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcE
Confidence                         1699999998766665555666788888885

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=4.8e-12  Score=87.20  Aligned_cols=96  Identities=19%  Similarity=0.201  Sum_probs=74.9

Q ss_pred             ccccChHHHHHHHHHhc-ccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCc
Q psy5757           8 AAIGGISAILTYLSIIQ-PHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGH   86 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~l~-~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~   86 (139)
                      |..+......+++.... +-.-.++.|+|+|||||.++...+.....  .|+|+|+++++++.++++..+.      ..+
T Consensus        23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l------~g~   94 (198)
T COG2263          23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEEL------LGD   94 (198)
T ss_pred             ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhh------CCc
Confidence            34445555555555553 22346788999999999999999998854  9999999999999999999872      268


Q ss_pred             EEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          87 IKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        87 i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      +.+.+.|+.+ +        ...+|.++.||+|.
T Consensus        95 v~f~~~dv~~-~--------~~~~dtvimNPPFG  119 (198)
T COG2263          95 VEFVVADVSD-F--------RGKFDTVIMNPPFG  119 (198)
T ss_pred             eEEEEcchhh-c--------CCccceEEECCCCc
Confidence            9999999655 2        35689999999975

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.39  E-value=4.2e-12  Score=91.74  Aligned_cols=79  Identities=15%  Similarity=0.306  Sum_probs=66.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .+.+|||+|||+|..+..++... +..+++++|+++.+++.+++++.. +.      .+++++++|+.+.+       +.
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~-------~~  152 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFEPL-------PG  152 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhccC-------cC
Confidence            44689999999999999999987 456999999999999999999887 44      67999999965421       24


Q ss_pred             CceeEEecCccccc
Q psy5757         108 DRYDFLPHAPAESW  121 (139)
Q Consensus       108 ~~~D~vi~~~~~~~  121 (139)
                      ++||+|++|++++.
T Consensus       153 ~~fD~Vi~npPy~~  166 (251)
T TIGR03534       153 GKFDLIVSNPPYIP  166 (251)
T ss_pred             CceeEEEECCCCCc
Confidence            67999999999764

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.38  E-value=1.4e-12  Score=90.36  Aligned_cols=87  Identities=17%  Similarity=0.290  Sum_probs=71.3

Q ss_pred             HhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHH
Q psy5757          22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETV  101 (139)
Q Consensus        22 ~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  101 (139)
                      .|.+.+.++.+|||+|||.|.+...|.+..  +++..|+|++++.+..+.++            .+.++++|+.+++.. 
T Consensus         6 ~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~-   70 (193)
T PF07021_consen    6 IIAEWIEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLAD-   70 (193)
T ss_pred             HHHHHcCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhh-
Confidence            344456889999999999999999999864  45999999999887777553            567899998776653 


Q ss_pred             hhhccCCceeEEecCccccccccce
Q psy5757         102 ELMMKFDRYDFLPHAPAESWMNIPV  126 (139)
Q Consensus       102 ~~~~~~~~~D~vi~~~~~~~~~~p~  126 (139)
                         .++++||+||.+.+++.+..|.
T Consensus        71 ---f~d~sFD~VIlsqtLQ~~~~P~   92 (193)
T PF07021_consen   71 ---FPDQSFDYVILSQTLQAVRRPD   92 (193)
T ss_pred             ---CCCCCccEEehHhHHHhHhHHH
Confidence               4578899999999999988884

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=3.3e-12  Score=93.98  Aligned_cols=97  Identities=15%  Similarity=0.234  Sum_probs=72.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ..+.+|||+|||.|.++..+++.. |..+++.+|+|..+++.|++++..+.     .++..+..+|..+..        .
T Consensus       157 ~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~-----~~~~~v~~s~~~~~v--------~  222 (300)
T COG2813         157 DLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANG-----VENTEVWASNLYEPV--------E  222 (300)
T ss_pred             cCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcC-----CCccEEEEecccccc--------c
Confidence            344599999999999999999999 48899999999999999999998832     255456667743311        2


Q ss_pred             CceeEEecCccccccccc--------eeeeeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIP--------VCINYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p--------~~~~~~~~~p~g~  138 (139)
                      ++||+|+|||+||-=.+-        .+.....++++|+
T Consensus       223 ~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGe  261 (300)
T COG2813         223 GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGE  261 (300)
T ss_pred             ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCE
Confidence            489999999999942221        2233566666665

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.38  E-value=3.6e-12  Score=94.25  Aligned_cols=77  Identities=16%  Similarity=0.354  Sum_probs=63.7

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      .+|||+|||+|..+..++... +..+++++|+|+.+++.|++++.. +.     ..+++++.+|+.+.+       +..+
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~-----~~~v~~~~~d~~~~~-------~~~~  182 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQL-----EHRVEFIQSNLFEPL-------AGQK  182 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhccC-------cCCC
Confidence            689999999999999999987 456999999999999999999987 43     235999999965422       1237


Q ss_pred             eeEEecCcccc
Q psy5757         110 YDFLPHAPAES  120 (139)
Q Consensus       110 ~D~vi~~~~~~  120 (139)
                      ||+|++||+..
T Consensus       183 fDlIvsNPPyi  193 (284)
T TIGR00536       183 IDIIVSNPPYI  193 (284)
T ss_pred             ccEEEECCCCC
Confidence            99999999854

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK06202 hypothetical protein; Provisional

Probab=99.38  E-value=1.4e-12  Score=93.75  Aligned_cols=84  Identities=17%  Similarity=0.180  Sum_probs=64.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc---CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM---NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~---~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .++.+|||+|||+|..+..+++..   ++..+++|+|+++++++.|+++...        .++++...+..+ +.     
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~~~~-l~-----  124 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAVSDE-LV-----  124 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEeccc-cc-----
Confidence            466799999999999999998754   2345999999999999999887644        345555554322 21     


Q ss_pred             ccCCceeEEecCccccccccc
Q psy5757         105 MKFDRYDFLPHAPAESWMNIP  125 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~~p  125 (139)
                      ...++||+|+++.++||+.++
T Consensus       125 ~~~~~fD~V~~~~~lhh~~d~  145 (232)
T PRK06202        125 AEGERFDVVTSNHFLHHLDDA  145 (232)
T ss_pred             ccCCCccEEEECCeeecCChH
Confidence            134689999999999999875

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.38  E-value=2.4e-12  Score=90.30  Aligned_cols=114  Identities=18%  Similarity=0.179  Sum_probs=76.4

Q ss_pred             ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEE
Q psy5757          10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIK   88 (139)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~   88 (139)
                      ++.+.....+...+.  ..++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++.. +.      .+++
T Consensus        23 ~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~------~~v~   93 (196)
T PRK07402         23 LTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGV------KNVE   93 (196)
T ss_pred             CCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC------CCeE
Confidence            344443334555553  5678899999999999999998765 456999999999999999999987 43      6899


Q ss_pred             EEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          89 FVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        89 ~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      ++.+|+.+.+..+     ...+|.++.... .-+.......++.++|+|.
T Consensus        94 ~~~~d~~~~~~~~-----~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~  137 (196)
T PRK07402         94 VIEGSAPECLAQL-----APAPDRVCIEGG-RPIKEILQAVWQYLKPGGR  137 (196)
T ss_pred             EEECchHHHHhhC-----CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeE
Confidence            9999975533221     122455544321 1112333444566777774

>PHA03411 putative methyltransferase; Provisional

Probab=99.38  E-value=5.1e-12  Score=92.34  Aligned_cols=97  Identities=14%  Similarity=0.231  Sum_probs=73.8

Q ss_pred             hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCC
Q psy5757           6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDG   85 (139)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~   85 (139)
                      .|+++++..+.....  +.  .....+|||+|||+|.++..++.+.+ ..+++++|+++.+++.+++++          +
T Consensus        45 ~G~FfTP~~i~~~f~--~~--~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~----------~  109 (279)
T PHA03411         45 SGAFFTPEGLAWDFT--ID--AHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL----------P  109 (279)
T ss_pred             ceeEcCCHHHHHHHH--hc--cccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC----------c
Confidence            477888887654432  22  34457999999999999999888753 359999999999999998763          4


Q ss_pred             cEEEEEccchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757          86 HIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        86 ~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                      +++++++|+.+..       ..++||+|++||++++...
T Consensus       110 ~v~~v~~D~~e~~-------~~~kFDlIIsNPPF~~l~~  141 (279)
T PHA03411        110 EAEWITSDVFEFE-------SNEKFDVVISNPPFGKINT  141 (279)
T ss_pred             CCEEEECchhhhc-------ccCCCcEEEEcCCccccCc
Confidence            6788999965521       1357999999999998653

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.38  E-value=2e-12  Score=95.79  Aligned_cols=94  Identities=18%  Similarity=0.186  Sum_probs=72.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      ++.+|||+|||+|..+..+++...   +|+++|+|+.+++.++++.....      -++++...|+.+ ..      ..+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~------l~v~~~~~D~~~-~~------~~~  183 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKEN------LNIRTGLYDINS-AS------IQE  183 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcC------CceEEEEechhc-cc------ccC
Confidence            345999999999999999998753   99999999999999999887621      267778787543 11      145


Q ss_pred             ceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757         109 RYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus       109 ~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                      +||+|+++.++|++..+     ....++.++|+|.
T Consensus       184 ~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~  218 (287)
T PRK12335        184 EYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGY  218 (287)
T ss_pred             CccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcE
Confidence            79999999999987632     3444777888884

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.37  E-value=2.3e-12  Score=91.40  Aligned_cols=97  Identities=13%  Similarity=0.227  Sum_probs=72.7

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM  104 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~  104 (139)
                      ++++.+|||+|||+|.++..+++..++.++|+++|+++ +        ..       .++++++++|+.+.  +..+...
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~-------~~~v~~i~~D~~~~~~~~~i~~~  112 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DP-------IVGVDFLQGDFRDELVLKALLER  112 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cC-------CCCcEEEecCCCChHHHHHHHHH
Confidence            47788999999999999999999987677999999997 1        11       25788999998762  2222223


Q ss_pred             ccCCceeEEecCccccccccc--------------eeeeeeeccCCCCC
Q psy5757         105 MKFDRYDFLPHAPAESWMNIP--------------VCINYTATMPEGSY  139 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~~p--------------~~~~~~~~~p~g~~  139 (139)
                      ...++||+|+++.+.+|...|              ....++.++|+|.+
T Consensus       113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~  161 (209)
T PRK11188        113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSF  161 (209)
T ss_pred             hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence            345789999999987775443              24457788888863

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.37  E-value=4.7e-12  Score=93.14  Aligned_cols=97  Identities=16%  Similarity=0.142  Sum_probs=74.9

Q ss_pred             hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757           5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT   83 (139)
Q Consensus         5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~   83 (139)
                      .+|+ ++..+.++..+++.+.  +.++.+|||+|||+|.++..+++...   +++++|+++.+++.+++++..       
T Consensus        19 ~~gq~fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~-------   86 (272)
T PRK00274         19 SLGQNFLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE-------   86 (272)
T ss_pred             ccCcCcCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc-------
Confidence            4566 4456667777777774  57788999999999999999999974   899999999999999887533       


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                       .+++++++|+.+ +.   ..  .-..|.|++|++++
T Consensus        87 -~~v~~i~~D~~~-~~---~~--~~~~~~vv~NlPY~  116 (272)
T PRK00274         87 -DNLTIIEGDALK-VD---LS--ELQPLKVVANLPYN  116 (272)
T ss_pred             -CceEEEEChhhc-CC---HH--HcCcceEEEeCCcc
Confidence             689999999765 21   11  10158999999854

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.37  E-value=6.1e-12  Score=90.03  Aligned_cols=99  Identities=18%  Similarity=0.284  Sum_probs=77.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++.. +.     ..+++++.+|+.+ +.     .+
T Consensus        50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~-~~-----~~  118 (239)
T PRK00216         50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFVQGDAEA-LP-----FP  118 (239)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEEeccccc-CC-----CC
Confidence            4678999999999999999999885356999999999999999998765 33     3578889888654 11     23


Q ss_pred             CCceeEEecCccccccccceeee---eeeccCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVCIN---YTATMPEG  137 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g  137 (139)
                      .++||+|+++..+|++.++..+.   +..++|+|
T Consensus       119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG  152 (239)
T PRK00216        119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGG  152 (239)
T ss_pred             CCCccEEEEecccccCCCHHHHHHHHHHhccCCc
Confidence            45799999999999888765332   55666666

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.36  E-value=4.9e-12  Score=96.59  Aligned_cols=100  Identities=17%  Similarity=0.209  Sum_probs=80.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..+..+||||||+|..+..+|+.. |...++|+|+++.++..+.+++.. ++      .|+.++.+|+.....    ..+
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~~ll~----~~~  189 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDARLLLE----LLP  189 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHhhh----hCC
Confidence            456789999999999999999998 577999999999999999999887 54      789999999755222    234


Q ss_pred             CCceeEEecCccccccccc---------eeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIP---------VCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p---------~~~~~~~~~p~g~  138 (139)
                      .+++|.|+++.+..|...+         .....+.++|+|.
T Consensus       190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~  230 (390)
T PRK14121        190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGT  230 (390)
T ss_pred             CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcE
Confidence            6789999999887776443         3334677888885

>KOG1661|consensus

Probab=99.36  E-value=2.5e-12  Score=89.82  Aligned_cols=115  Identities=30%  Similarity=0.409  Sum_probs=93.6

Q ss_pred             hhhhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHHHhhc---
Q psy5757           3 LVKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQ-VIGIEHVPQLVNSSIQNILHSN---   78 (139)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~-v~~~d~~~~~~~~a~~~~~~~~---   78 (139)
                      .++++..+++|++.+.+.+.|.+++++|.+.||+|+|||+++..+++.....+. ++|+|.-++.++.+++++....   
T Consensus        56 ~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~  135 (237)
T KOG1661|consen   56 KIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTS  135 (237)
T ss_pred             ccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCc
Confidence            456788999999999999999999999999999999999999999987765444 4999999999999999987733   


Q ss_pred             --cccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757          79 --ARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        79 --~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                        ..-+...++.++++|...++.      +..+||.|.+...-..++
T Consensus       136 e~~~~~~~~~l~ivvGDgr~g~~------e~a~YDaIhvGAaa~~~p  176 (237)
T KOG1661|consen  136 ESSSKLKRGELSIVVGDGRKGYA------EQAPYDAIHVGAAASELP  176 (237)
T ss_pred             hhhhhhccCceEEEeCCccccCC------ccCCcceEEEccCccccH
Confidence              122445688999999887554      356799999887644433

>PRK14967 putative methyltransferase; Provisional

Probab=99.35  E-value=5.5e-12  Score=90.19  Aligned_cols=81  Identities=20%  Similarity=0.260  Sum_probs=63.7

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +.++.+|||+|||+|.++..+++..  ..+++++|+++.+++.+++++....      .+++++.+|+.+.       .+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~~d~~~~-------~~   98 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAG------VDVDVRRGDWARA-------VE   98 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEECchhhh-------cc
Confidence            4677899999999999999998863  2389999999999999999987611      2578888885441       12


Q ss_pred             CCceeEEecCcccccc
Q psy5757         107 FDRYDFLPHAPAESWM  122 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~  122 (139)
                      .++||+|++|++++..
T Consensus        99 ~~~fD~Vi~npPy~~~  114 (223)
T PRK14967         99 FRPFDVVVSNPPYVPA  114 (223)
T ss_pred             CCCeeEEEECCCCCCC
Confidence            4579999999886543

>PRK05785 hypothetical protein; Provisional

Probab=99.35  E-value=6.1e-12  Score=90.26  Aligned_cols=97  Identities=11%  Similarity=0.080  Sum_probs=70.4

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      .+.+.+.....++.+|||+|||||..+..+++..  ..+++|+|+|++|++.|++..             .++++|+.+ 
T Consensus        40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d~~~-  103 (226)
T PRK05785         40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD-------------DKVVGSFEA-  103 (226)
T ss_pred             HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc-------------ceEEechhh-
Confidence            3444554333457899999999999999999886  239999999999999987531             235677433 


Q ss_pred             hHHHhhhccCCceeEEecCcccccccccee---eeeeeccC
Q psy5757          98 IETVELMMKFDRYDFLPHAPAESWMNIPVC---INYTATMP  135 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p  135 (139)
                         +  +.+.++||+|+++.++|++.++..   ..++.++|
T Consensus       104 ---l--p~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp  139 (226)
T PRK05785        104 ---L--PFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRK  139 (226)
T ss_pred             ---C--CCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcC
Confidence               2  234678999999999999988642   22555555

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.34  E-value=1.9e-12  Score=90.67  Aligned_cols=84  Identities=17%  Similarity=0.222  Sum_probs=64.0

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .++++.+|||+|||+|.++..+++...  ..++++|+++++++.+++            .+++++++|+.+.+.    ..
T Consensus        10 ~i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~------------~~~~~~~~d~~~~l~----~~   71 (194)
T TIGR02081        10 LIPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA------------RGVNVIQGDLDEGLE----AF   71 (194)
T ss_pred             hcCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH------------cCCeEEEEEhhhccc----cc
Confidence            456778999999999999999887653  378999999999888753            245677787543221    12


Q ss_pred             cCCceeEEecCcccccccccee
Q psy5757         106 KFDRYDFLPHAPAESWMNIPVC  127 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~~  127 (139)
                      +.++||+|+++.++||+.+|..
T Consensus        72 ~~~sfD~Vi~~~~l~~~~d~~~   93 (194)
T TIGR02081        72 PDKSFDYVILSQTLQATRNPEE   93 (194)
T ss_pred             CCCCcCEEEEhhHhHcCcCHHH
Confidence            3467999999999999988743

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.34  E-value=4.1e-12  Score=97.49  Aligned_cols=93  Identities=15%  Similarity=0.158  Sum_probs=73.5

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ++++.+|||+|||+|.++..+++..+  ++|+++|+|+++++.|+++...        .++++...|..+    +     
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~--------l~v~~~~~D~~~----l-----  225 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG--------LPVEIRLQDYRD----L-----  225 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc--------CeEEEEECchhh----c-----
Confidence            57889999999999999999998764  4999999999999999988743        247777777432    1     


Q ss_pred             CCceeEEecCcccccccc-----ceeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNI-----PVCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~-----p~~~~~~~~~p~g~  138 (139)
                      .++||.|++...++|+..     .....++.++|+|.
T Consensus       226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~  262 (383)
T PRK11705        226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGL  262 (383)
T ss_pred             CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcE
Confidence            357999999999988743     23444777888874

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.34  E-value=1.1e-11  Score=88.22  Aligned_cols=90  Identities=14%  Similarity=0.222  Sum_probs=68.8

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~   96 (139)
                      .+.+++.....++.+|||+|||+|.++..++....   +++|+|++++++..|++++.. ..     ..++++.++|+.+
T Consensus        44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~  115 (219)
T TIGR02021        44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVNDLLS  115 (219)
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChhh
Confidence            34445532135678999999999999999988643   899999999999999999876 32     2478999998433


Q ss_pred             hhHHHhhhccCCceeEEecCcccccccc
Q psy5757          97 RIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        97 ~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                          +    + ++||+|++..++++++.
T Consensus       116 ----~----~-~~fD~ii~~~~l~~~~~  134 (219)
T TIGR02021       116 ----L----C-GEFDIVVCMDVLIHYPA  134 (219)
T ss_pred             ----C----C-CCcCEEEEhhHHHhCCH
Confidence                1    1 67999999888777643

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.34  E-value=2.7e-11  Score=85.30  Aligned_cols=89  Identities=15%  Similarity=0.143  Sum_probs=67.4

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~   96 (139)
                      .+.+++.. ..++.++||+|||+|.++..++.+..  .+++++|+++.+++.++++++. +.      .+++++.+|+.+
T Consensus        43 ~l~~~l~~-~~~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D~~~  113 (199)
T PRK10909         43 TLFNWLAP-VIVDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTNALS  113 (199)
T ss_pred             HHHHHHhh-hcCCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEchHHH
Confidence            34454432 24568999999999999986554442  3999999999999999999988 44      689999999765


Q ss_pred             hhHHHhhhccCCceeEEecCcccc
Q psy5757          97 RIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        97 ~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      .+..     ...+||+|+++|+++
T Consensus       114 ~l~~-----~~~~fDlV~~DPPy~  132 (199)
T PRK10909        114 FLAQ-----PGTPHNVVFVDPPFR  132 (199)
T ss_pred             HHhh-----cCCCceEEEECCCCC
Confidence            3321     124699999999954

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.33  E-value=3.1e-12  Score=100.53  Aligned_cols=106  Identities=18%  Similarity=0.193  Sum_probs=78.1

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~   96 (139)
                      ..+++.+.  ..++.+|||+|||+|..+..+++...   +++++|+++.+++.+++....       .++++++++|+.+
T Consensus        27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~-------~~~i~~~~~d~~~   94 (475)
T PLN02336         27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGH-------YKNVKFMCADVTS   94 (475)
T ss_pred             hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhcc-------CCceEEEEecccc
Confidence            34444443  24567999999999999999999864   899999999999887653222       3688999999653


Q ss_pred             hhHHHhhhccCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757          97 RIETVELMMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus        97 ~~~~~~~~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                      .  .  .+.+.++||+|+++.++||+.++     ....++.++|+|.
T Consensus        95 ~--~--~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~  137 (475)
T PLN02336         95 P--D--LNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGY  137 (475)
T ss_pred             c--c--cCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeE
Confidence            1  1  12235689999999999998764     2334777888884

>PRK04266 fibrillarin; Provisional

Probab=99.33  E-value=4.2e-12  Score=91.05  Aligned_cols=102  Identities=18%  Similarity=0.193  Sum_probs=73.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ++++.+|||+|||+|..+..+++..+ .++|+++|+++++++.+.++++.       ..|+.++.+|..+.....  . -
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-------~~nv~~i~~D~~~~~~~~--~-l  138 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-------RKNIIPILADARKPERYA--H-V  138 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-------cCCcEEEECCCCCcchhh--h-c
Confidence            57889999999999999999999885 66999999999999988777654       257888999865411101  1 1


Q ss_pred             CCceeEEecCccccccc-cceeeeeeeccCCCCC
Q psy5757         107 FDRYDFLPHAPAESWMN-IPVCINYTATMPEGSY  139 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~-~p~~~~~~~~~p~g~~  139 (139)
                      .++||+|++..+..|.. ......++.++|+|.+
T Consensus       139 ~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~l  172 (226)
T PRK04266        139 VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYL  172 (226)
T ss_pred             cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEE
Confidence            24599999764422211 1134457788888853

>TIGR00755 ksgA dimethyladenosine transferase

Probab=99.32  E-value=1.7e-11  Score=89.27  Aligned_cols=97  Identities=20%  Similarity=0.206  Sum_probs=76.8

Q ss_pred             hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757           5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT   83 (139)
Q Consensus         5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~   83 (139)
                      .+|+ ++..+.+...+++.+.  ..++.+|||+|||+|.++..+++...   +++++|+++.+++.+++++..       
T Consensus         6 ~~gq~fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~-------   73 (253)
T TIGR00755         6 SLGQNFLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL-------   73 (253)
T ss_pred             CCCCccCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc-------
Confidence            4677 4466777788888775  56788999999999999999999885   799999999999999887643       


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCcee---EEecCccccc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYD---FLPHAPAESW  121 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D---~vi~~~~~~~  121 (139)
                      ..+++++++|+.+. .       ...+|   +|++|.++|.
T Consensus        74 ~~~v~v~~~D~~~~-~-------~~~~d~~~~vvsNlPy~i  106 (253)
T TIGR00755        74 YERLEVIEGDALKV-D-------LPDFPKQLKVVSNLPYNI  106 (253)
T ss_pred             CCcEEEEECchhcC-C-------hhHcCCcceEEEcCChhh
Confidence            36899999997551 1       11345   9999999774

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.32  E-value=2e-11  Score=95.35  Aligned_cols=82  Identities=17%  Similarity=0.283  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||+|.++..+++...   +++++|+|+.+++.|+++++. +.      .+++++.+|+.+.+....  .
T Consensus       295 ~~~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d~~~~l~~~~--~  363 (443)
T PRK13168        295 PQPGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGL------DNVTFYHANLEEDFTDQP--W  363 (443)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeChHHhhhhhh--h
Confidence            35678999999999999999999874   999999999999999999987 44      689999999765433211  1


Q ss_pred             cCCceeEEecCccc
Q psy5757         106 KFDRYDFLPHAPAE  119 (139)
Q Consensus       106 ~~~~~D~vi~~~~~  119 (139)
                      ...+||+|+++|+.
T Consensus       364 ~~~~fD~Vi~dPPr  377 (443)
T PRK13168        364 ALGGFDKVLLDPPR  377 (443)
T ss_pred             hcCCCCEEEECcCC
Confidence            23569999999883

>PRK14968 putative methyltransferase; Provisional

Probab=99.31  E-value=1.3e-11  Score=85.39  Aligned_cols=90  Identities=17%  Similarity=0.258  Sum_probs=67.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+.+.+.  ..++.++||+|||+|.++..+++..   .+++++|+++++++.+++++.. +.    ...++.+++.|.
T Consensus        12 ~~~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~~d~   82 (188)
T PRK14968         12 SFLLAENAV--DKKGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNI----RNNGVEVIRSDL   82 (188)
T ss_pred             HHHHHHhhh--ccCCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCC----CCcceEEEeccc
Confidence            344555554  3677899999999999999999983   3999999999999999999876 43    111288888886


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccc
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      .+.+       ...+||+|++|+++..
T Consensus        83 ~~~~-------~~~~~d~vi~n~p~~~  102 (188)
T PRK14968         83 FEPF-------RGDKFDVILFNPPYLP  102 (188)
T ss_pred             cccc-------cccCceEEEECCCcCC
Confidence            5422       1237999999988654

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.31  E-value=1.5e-11  Score=87.18  Aligned_cols=98  Identities=16%  Similarity=0.233  Sum_probs=76.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++.+|||+|||+|..+..+++..+..++++++|+++.+++.++++...       ..+++++.+|+.+ ..     .+.
T Consensus        38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~~~~~d~~~-~~-----~~~  104 (223)
T TIGR01934        38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIEFIQADAEA-LP-----FED  104 (223)
T ss_pred             CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCceEEecchhc-CC-----CCC
Confidence            4678999999999999999999885336999999999999999887642       2578888888654 11     234


Q ss_pred             CceeEEecCccccccccceee---eeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      ++||+|+++..+|++.++...   ....++|+|.
T Consensus       105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~  138 (223)
T TIGR01934       105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGR  138 (223)
T ss_pred             CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcE
Confidence            579999999999998876433   2566677764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.31  E-value=7.3e-12  Score=94.39  Aligned_cols=106  Identities=15%  Similarity=0.111  Sum_probs=76.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+++..  ..+++.++||+|||+|.++..++...   ++++|+|+++.+++.++++++. +.      +++++.++|+
T Consensus       171 a~~~~~l~--~~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~------~~i~~~~~D~  239 (329)
T TIGR01177       171 ARAMVNLA--RVTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGI------EDFFVKRGDA  239 (329)
T ss_pred             HHHHHHHh--CCCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCC------CCCeEEecch
Confidence            33444433  25788899999999999998877654   3899999999999999999987 54      5688899996


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccc------------cceeeeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMN------------IPVCINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~------------~p~~~~~~~~~p~g~  138 (139)
                      .+ ++     ...++||+|++||++....            +......+.++|+|.
T Consensus       240 ~~-l~-----~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~  289 (329)
T TIGR01177       240 TK-LP-----LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGW  289 (329)
T ss_pred             hc-CC-----cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcE
Confidence            54 21     2246799999999864321            122333567777774

This family is found exclusively in the Archaea.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.31  E-value=2.3e-11  Score=88.53  Aligned_cols=78  Identities=14%  Similarity=0.147  Sum_probs=61.5

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      ..++||+|||+|.++..++...+ ..+++++|+|+.+++.|++++..        .+.+++.+|+.+.+..   . ..++
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~--------~~~~~~~~D~~~~l~~---~-~~~~  153 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLAD--------AGGTVHEGDLYDALPT---A-LRGR  153 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHH--------cCCEEEEeechhhcch---h-cCCC
Confidence            45899999999999999998863 45899999999999999999876        2246788886553321   1 1246


Q ss_pred             eeEEecCcccc
Q psy5757         110 YDFLPHAPAES  120 (139)
Q Consensus       110 ~D~vi~~~~~~  120 (139)
                      ||+|++||++.
T Consensus       154 fDlVv~NPPy~  164 (251)
T TIGR03704       154 VDILAANAPYV  164 (251)
T ss_pred             EeEEEECCCCC
Confidence            99999999864

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.31  E-value=9.8e-12  Score=91.88  Aligned_cols=98  Identities=17%  Similarity=0.106  Sum_probs=71.0

Q ss_pred             CCCeEEEEcccCChh-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh--hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          29 ENSKVLEIGSGSGYL-TNMISELMNSTGQVIGIEHVPQLVNSSIQNILH--SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~-~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ++++|+|+|||.|.+ +..++....+.++++++|+++++++.|++.+..  ++     ..+++|..+|+.+...      
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~~rV~F~~~Da~~~~~------  191 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----SKRMFFHTADVMDVTE------  191 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----cCCcEEEECchhhccc------
Confidence            678999999997744 444554555788999999999999999999853  44     3679999999655211      


Q ss_pred             cCCceeEEecCccccccc--cce---eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMN--IPV---CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~--~p~---~~~~~~~~p~g~  138 (139)
                      ..+.||+|++. ++|.+.  ++.   ....+.++|+|.
T Consensus       192 ~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~  228 (296)
T PLN03075        192 SLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGAL  228 (296)
T ss_pred             ccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcE
Confidence            23579999999 766653  333   333666777764

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.30  E-value=6.7e-12  Score=84.56  Aligned_cols=97  Identities=20%  Similarity=0.266  Sum_probs=67.4

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      ..+..+.+..+++++|||+|||+|.++..+++...   +++++|+++.+++.     ..       .....+...+    
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~-------~~~~~~~~~~----   71 (161)
T PF13489_consen   11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RN-------VVFDNFDAQD----   71 (161)
T ss_dssp             HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TT-------SEEEEEECHT----
T ss_pred             HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hh-------hhhhhhhhhh----
Confidence            33444443357889999999999999999977654   99999999999887     11       0111111111    


Q ss_pred             hHHHhhhccCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757          98 IETVELMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                           ...+.++||+|+++.++||+++|...   .++.++|+|.
T Consensus        72 -----~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~  110 (161)
T PF13489_consen   72 -----PPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGY  110 (161)
T ss_dssp             -----HHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEE
T ss_pred             -----hhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCE
Confidence                 11235789999999999999987533   3666777663

...

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.30  E-value=1.3e-11  Score=90.68  Aligned_cols=90  Identities=16%  Similarity=0.255  Sum_probs=66.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNST--GQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~--~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +..+|||+|||+|..+..+++..+..  .+++|+|+|+.+++.|+++.          +++++.++|..+    +  +.+
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~----l--p~~  148 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHR----L--PFA  148 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeeccc----C--CCc
Confidence            45789999999999999999876422  37999999999999997653          567888888543    2  223


Q ss_pred             CCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      .++||+|++.....    .....++.++|+|.
T Consensus       149 ~~sfD~I~~~~~~~----~~~e~~rvLkpgG~  176 (272)
T PRK11088        149 DQSLDAIIRIYAPC----KAEELARVVKPGGI  176 (272)
T ss_pred             CCceeEEEEecCCC----CHHHHHhhccCCCE
Confidence            56899999876422    23445677788874

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.29  E-value=3.6e-11  Score=85.90  Aligned_cols=81  Identities=19%  Similarity=0.258  Sum_probs=65.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++...   +++++|+++.+++.|+++... +.     ..++++..+|.    +.     .
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~----~~-----~  124 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGL-----AGNITFEVGDL----ES-----L  124 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEcCc----hh-----c
Confidence            4678999999999999999998753   799999999999999998876 32     25788998883    21     2


Q ss_pred             CCceeEEecCccccccccc
Q psy5757         107 FDRYDFLPHAPAESWMNIP  125 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p  125 (139)
                      .++||+|++..++|+++++
T Consensus       125 ~~~fD~v~~~~~l~~~~~~  143 (230)
T PRK07580        125 LGRFDTVVCLDVLIHYPQE  143 (230)
T ss_pred             cCCcCEEEEcchhhcCCHH
Confidence            3579999999998776544

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.28  E-value=3.4e-11  Score=85.52  Aligned_cols=93  Identities=16%  Similarity=0.273  Sum_probs=75.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEE-cc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVA-LG   93 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~-~d   93 (139)
                      ....+..+. ...+.++|||+|++.|+-+..++...+.+++++++|.+++..+.|++++++ +.     .++++.+. +|
T Consensus        47 ~g~~L~~L~-~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----~~~i~~~~~gd  120 (219)
T COG4122          47 TGALLRLLA-RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----DDRIELLLGGD  120 (219)
T ss_pred             HHHHHHHHH-HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----cceEEEEecCc
Confidence            334444444 256788999999999999999999997688999999999999999999999 77     56688888 58


Q ss_pred             chhhhHHHhhhccCCceeEEecCcc
Q psy5757          94 MIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        94 ~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      ..+.+..    ...++||+||....
T Consensus       121 al~~l~~----~~~~~fDliFIDad  141 (219)
T COG4122         121 ALDVLSR----LLDGSFDLVFIDAD  141 (219)
T ss_pred             HHHHHHh----ccCCCccEEEEeCC
Confidence            7664442    23578999998876

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.28  E-value=2.3e-11  Score=90.77  Aligned_cols=98  Identities=13%  Similarity=0.175  Sum_probs=77.1

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.++||+|||+|..+..++++. |..+++++|. +.+++.+++++.. +.     .++++++.+|+.+.        
T Consensus       147 ~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl-----~~rv~~~~~d~~~~--------  211 (306)
T TIGR02716       147 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDIYKE--------  211 (306)
T ss_pred             CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCc-----cceEEEEecCccCC--------
Confidence            4677899999999999999999998 5779999997 6899999998887 55     46899999996531        


Q ss_pred             cCCceeEEecCccccccccc-----eeeeeeeccCCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGSY  139 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~~  139 (139)
                      +...+|++++...+|...+.     ....++.++|+|.+
T Consensus       212 ~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l  250 (306)
T TIGR02716       212 SYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRL  250 (306)
T ss_pred             CCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEE
Confidence            12236999888888876554     23448888998853

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.28  E-value=7.4e-11  Score=85.45  Aligned_cols=98  Identities=21%  Similarity=0.294  Sum_probs=74.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      +..++..+.  +.+|.+|||.|+|+|+++.++++...|.++|+.+|+.++..+.|+++++. ++     ..++++.+.|+
T Consensus        29 ~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~~Dv  101 (247)
T PF08704_consen   29 ISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHHRDV  101 (247)
T ss_dssp             HHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEES-G
T ss_pred             HHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEecce
Confidence            556666665  79999999999999999999999999999999999999999999999998 66     46899999998


Q ss_pred             hh-hhHHHhhhccCCceeEEecCcccccccc
Q psy5757          95 IK-RIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        95 ~~-~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                      .+ ++.   .. -...+|.|+...+--|..-
T Consensus       102 ~~~g~~---~~-~~~~~DavfLDlp~Pw~~i  128 (247)
T PF08704_consen  102 CEEGFD---EE-LESDFDAVFLDLPDPWEAI  128 (247)
T ss_dssp             GCG--S---TT--TTSEEEEEEESSSGGGGH
T ss_pred             eccccc---cc-ccCcccEEEEeCCCHHHHH
Confidence            53 442   11 1256999999988666443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.27  E-value=5.4e-11  Score=89.21  Aligned_cols=76  Identities=16%  Similarity=0.136  Sum_probs=63.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ++.+|||+|||+|.++..+++...   +++|+|+++.+++.|+++++. ++      .+++++++|+.+...    . ..
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~~~----~-~~  238 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQFAT----A-QG  238 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHHHH----h-cC
Confidence            568999999999999999999653   999999999999999999988 44      689999999765222    1 23


Q ss_pred             CceeEEecCcc
Q psy5757         108 DRYDFLPHAPA  118 (139)
Q Consensus       108 ~~~D~vi~~~~  118 (139)
                      ++||+|+++|+
T Consensus       239 ~~~D~Vv~dPP  249 (315)
T PRK03522        239 EVPDLVLVNPP  249 (315)
T ss_pred             CCCeEEEECCC
Confidence            46999999987

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.26  E-value=6.2e-11  Score=86.89  Aligned_cols=80  Identities=19%  Similarity=0.367  Sum_probs=65.2

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++.+|||+|||+|..+..++... +..+++++|+++.+++.|++++....     ..+++++.+|+.+.+       ..
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~-----~~~i~~~~~d~~~~~-------~~  173 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGL-----GARVEFLQGDWFEPL-------PG  173 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCC-----CCcEEEEEccccCcC-------CC
Confidence            466799999999999999999988 46699999999999999999987311     267999999964321       13


Q ss_pred             CceeEEecCcccc
Q psy5757         108 DRYDFLPHAPAES  120 (139)
Q Consensus       108 ~~~D~vi~~~~~~  120 (139)
                      ++||+|++|+++.
T Consensus       174 ~~fD~Iv~npPy~  186 (275)
T PRK09328        174 GRFDLIVSNPPYI  186 (275)
T ss_pred             CceeEEEECCCcC
Confidence            5799999999854

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.26  E-value=4e-11  Score=86.91  Aligned_cols=97  Identities=13%  Similarity=0.171  Sum_probs=78.1

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ..+++..+.. ..+.++|||+|+++|+-+.++++..++.++++++|.+++..+.|++++.+ ++     .++++++.+++
T Consensus        67 ~g~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----~~~I~~~~G~a  140 (247)
T PLN02589         67 EGQFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----AHKIDFREGPA  140 (247)
T ss_pred             HHHHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEEeccH
Confidence            3455555542 45568999999999999999999987788999999999999999999998 76     58999999999


Q ss_pred             hhhhHHHhhhc-cCCceeEEecCcc
Q psy5757          95 IKRIETVELMM-KFDRYDFLPHAPA  118 (139)
Q Consensus        95 ~~~~~~~~~~~-~~~~~D~vi~~~~  118 (139)
                      .+.++++.... ..++||+||....
T Consensus       141 ~e~L~~l~~~~~~~~~fD~iFiDad  165 (247)
T PLN02589        141 LPVLDQMIEDGKYHGTFDFIFVDAD  165 (247)
T ss_pred             HHHHHHHHhccccCCcccEEEecCC
Confidence            88776653221 1257999998876

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.26  E-value=9.3e-12  Score=91.22  Aligned_cols=104  Identities=11%  Similarity=0.207  Sum_probs=71.6

Q ss_pred             CCCeEEEEcccCCh----hHHHHHHHcC----CCceEEEEeCCHHHHHHHHHHHHh-h-ccc--------cc--------
Q psy5757          29 ENSKVLEIGSGSGY----LTNMISELMN----STGQVIGIEHVPQLVNSSIQNILH-S-NAR--------LL--------   82 (139)
Q Consensus        29 ~~~~iLdiG~G~G~----~~~~l~~~~~----~~~~v~~~d~~~~~~~~a~~~~~~-~-~~~--------~~--------   82 (139)
                      ++.+|||+|||+|.    ++..+++..+    ...+++|+|+|+.+++.|++.... . .+.        .+        
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45699999999996    4555555543    145899999999999999886421 0 000        00        


Q ss_pred             ----cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757          83 ----TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus        83 ----~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                          -..++++.+.|+.+.      ..+.++||+|+|..++|++.++.     ...++.++|+|.
T Consensus       179 v~~~ir~~V~F~~~dl~~~------~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~  237 (264)
T smart00138      179 VKPELKERVRFAKHNLLAE------SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGY  237 (264)
T ss_pred             EChHHhCcCEEeeccCCCC------CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeE
Confidence                013678888886541      11356799999999999997653     344888889885

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.25  E-value=3.9e-11  Score=83.49  Aligned_cols=93  Identities=14%  Similarity=0.270  Sum_probs=69.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      .-.+++|+|||.|.++..|+.+..   +++++|+++.+++.|++++..       .+++++++.|+.+.+       +.+
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~-------P~~  105 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFW-------PEG  105 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT----------SS
T ss_pred             ccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCC-------CCC
Confidence            335899999999999999999986   999999999999999999877       478999999965522       467


Q ss_pred             ceeEEecCccccccccc------eeeeeeeccCCCC
Q psy5757         109 RYDFLPHAPAESWMNIP------VCINYTATMPEGS  138 (139)
Q Consensus       109 ~~D~vi~~~~~~~~~~p------~~~~~~~~~p~g~  138 (139)
                      +||+|+...+++++.+.      .......+.|+|.
T Consensus       106 ~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~  141 (201)
T PF05401_consen  106 RFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGH  141 (201)
T ss_dssp             -EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEE
T ss_pred             CeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCE
Confidence            89999999999999753      2333455666663

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR03438 probable methyltransferase

Probab=99.25  E-value=3.8e-11  Score=89.51  Aligned_cols=116  Identities=10%  Similarity=0.057  Sum_probs=78.8

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      .....+...+.++.+|||+|||+|..+..+++......+++++|+|++|++.+++++....    ...++..+++|+.+.
T Consensus        52 ~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~----p~~~v~~i~gD~~~~  127 (301)
T TIGR03438        52 RHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY----PQLEVHGICADFTQP  127 (301)
T ss_pred             HHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC----CCceEEEEEEcccch
Confidence            3344444345677899999999999999999987423589999999999999998876511    113567789998763


Q ss_pred             hHHHhhhccCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757          98 IETVELMMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                      .+.. .........++++..+++++...     ....++.+.|+|.
T Consensus       128 ~~~~-~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~  172 (301)
T TIGR03438       128 LALP-PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGG  172 (301)
T ss_pred             hhhh-cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            3211 11111134567777778877642     3444777888875

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.25  E-value=6.9e-11  Score=91.05  Aligned_cols=84  Identities=19%  Similarity=0.180  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++++|||+|||+|.++..++...  ..+++++|+|+.+++.|++++.. ++    ...+++++++|+.+.+.++..  .
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl----~~~~v~~i~~D~~~~l~~~~~--~  290 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKL----DLSKAEFVRDDVFKLLRTYRD--R  290 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCC----CCCcEEEEEccHHHHHHHHHh--c
Confidence            467899999999999988766543  23899999999999999999988 43    114799999998775544321  2


Q ss_pred             CCceeEEecCccc
Q psy5757         107 FDRYDFLPHAPAE  119 (139)
Q Consensus       107 ~~~~D~vi~~~~~  119 (139)
                      .++||+|+++|+.
T Consensus       291 ~~~fDlVilDPP~  303 (396)
T PRK15128        291 GEKFDVIVMDPPK  303 (396)
T ss_pred             CCCCCEEEECCCC
Confidence            3579999999984

>KOG2904|consensus

Probab=99.25  E-value=7.8e-11  Score=85.44  Aligned_cols=113  Identities=16%  Similarity=0.193  Sum_probs=81.4

Q ss_pred             hhcccccChHH---HHHHHHHhccc-CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc
Q psy5757           5 KIGAAIGGISA---ILTYLSIIQPH-LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA   79 (139)
Q Consensus         5 ~~~~~~~~~~~---~~~~~~~l~~~-~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~   79 (139)
                      +.|..|++++.   +..+++.+.+. ...+..++|+|||+|..+..++...+ ++.++++|.|+.++..|.+|.++ .+ 
T Consensus       120 ~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l-  197 (328)
T KOG2904|consen  120 KPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKL-  197 (328)
T ss_pred             cCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhh-
Confidence            46788888874   44444444421 12345899999999999999999995 88999999999999999999998 65 


Q ss_pred             ccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757          80 RLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        80 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                          ..++.+++-++...... +.+...+++|++++||++-.-.|
T Consensus       198 ----~g~i~v~~~~me~d~~~-~~~l~~~~~dllvsNPPYI~~dD  237 (328)
T KOG2904|consen  198 ----SGRIEVIHNIMESDASD-EHPLLEGKIDLLVSNPPYIRKDD  237 (328)
T ss_pred             ----cCceEEEeccccccccc-ccccccCceeEEecCCCcccccc
Confidence                56777776554431110 01234578999999998544333

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.24  E-value=1e-10  Score=87.59  Aligned_cols=98  Identities=16%  Similarity=0.102  Sum_probs=69.9

Q ss_pred             HHHHHHHhccc-CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPH-LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~-~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~   94 (139)
                      +..+++++... ..++.+|||+|||+|.++..+++...   +|+++|+|+.+++.++++............++++...|+
T Consensus       130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl  206 (315)
T PLN02585        130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL  206 (315)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence            34555565421 13568999999999999999998753   899999999999999998765100000124678888884


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccc
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIP  125 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p  125 (139)
                          +.+     .++||+|++..+++|+++.
T Consensus       207 ----~~l-----~~~fD~Vv~~~vL~H~p~~  228 (315)
T PLN02585        207 ----ESL-----SGKYDTVTCLDVLIHYPQD  228 (315)
T ss_pred             ----hhc-----CCCcCEEEEcCEEEecCHH
Confidence                321     3579999999998776653

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.23  E-value=1.4e-10  Score=90.39  Aligned_cols=81  Identities=23%  Similarity=0.258  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||+|.++..+++...   +|+++|+++.+++.|++++.. +.      .|++++.+|+.+.+..+..  
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~~~~l~~~~~--  358 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTLETVLPKQPW--  358 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCHHHHHHHHHh--
Confidence            35668999999999999999998864   899999999999999999987 44      7899999997664443211  


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ..++||+|+.+|+
T Consensus       359 ~~~~~D~vi~dPP  371 (431)
T TIGR00479       359 AGQIPDVLLLDPP  371 (431)
T ss_pred             cCCCCCEEEECcC
Confidence            2346999999987

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=1.2e-10  Score=84.56  Aligned_cols=97  Identities=18%  Similarity=0.194  Sum_probs=77.5

Q ss_pred             hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757           5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT   83 (139)
Q Consensus         5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~   83 (139)
                      .+|| ++-......++.+...  ..++..|||||+|.|.+|..|+++..   +|+++|+|+.++...++.+..       
T Consensus         7 ~~GQnFL~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------   74 (259)
T COG0030           7 RLGQNFLIDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP-------   74 (259)
T ss_pred             CcccccccCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc-------
Confidence            4677 4456667788888886  56688999999999999999999997   899999999999999998764       


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCcc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      .+|++++.+|+.+ +.   +.. ....+.|++|.+
T Consensus        75 ~~n~~vi~~DaLk-~d---~~~-l~~~~~vVaNlP  104 (259)
T COG0030          75 YDNLTVINGDALK-FD---FPS-LAQPYKVVANLP  104 (259)
T ss_pred             ccceEEEeCchhc-Cc---chh-hcCCCEEEEcCC
Confidence            4789999999776 21   110 005789999988

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.22  E-value=1.4e-10  Score=81.00  Aligned_cols=90  Identities=14%  Similarity=0.185  Sum_probs=66.4

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      ..+.+.+.  ..++.++||+|||.|..+.+|++++-   .|+++|+|+..++.+++.... ++       +++..+.|+.
T Consensus        20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l-------~i~~~~~Dl~   87 (192)
T PF03848_consen   20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGL-------DIRTRVADLN   87 (192)
T ss_dssp             HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGC
T ss_pred             HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCc-------eeEEEEecch
Confidence            44455543  33567999999999999999999986   899999999999999888776 44       4888888854


Q ss_pred             hhhHHHhhhccCCceeEEecCccccccccc
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMNIP  125 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p  125 (139)
                      + +.      ..+.||+|++.-+++++..+
T Consensus        88 ~-~~------~~~~yD~I~st~v~~fL~~~  110 (192)
T PF03848_consen   88 D-FD------FPEEYDFIVSTVVFMFLQRE  110 (192)
T ss_dssp             C-BS-------TTTEEEEEEESSGGGS-GG
T ss_pred             h-cc------ccCCcCEEEEEEEeccCCHH
Confidence            4 11      12579999998888888765

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK04457 spermidine synthase; Provisional

Probab=99.22  E-value=6.3e-11  Score=86.77  Aligned_cols=79  Identities=16%  Similarity=0.242  Sum_probs=64.8

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++++|||+|||+|.++..+++.. +.++++++|+++++++.|++++.. ..     .++++++++|+.+.+.+     .
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~~l~~-----~  133 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAEYIAV-----H  133 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHHHHHh-----C
Confidence            456799999999999999999988 577999999999999999998765 22     37899999997764442     1


Q ss_pred             CCceeEEecCc
Q psy5757         107 FDRYDFLPHAP  117 (139)
Q Consensus       107 ~~~~D~vi~~~  117 (139)
                      .++||+|+++.
T Consensus       134 ~~~yD~I~~D~  144 (262)
T PRK04457        134 RHSTDVILVDG  144 (262)
T ss_pred             CCCCCEEEEeC
Confidence            35799999864

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.21  E-value=1.8e-10  Score=87.98  Aligned_cols=96  Identities=13%  Similarity=0.146  Sum_probs=72.3

Q ss_pred             HHHHHHHHHhcccCC-CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEE
Q psy5757          14 SAILTYLSIIQPHLN-ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVA   91 (139)
Q Consensus        14 ~~~~~~~~~l~~~~~-~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~   91 (139)
                      .....+.+.+...+. .+.++||++||+|.++..+++...   +|+++|+++.+++.+++++.. +.      .|++++.
T Consensus       190 ~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~  260 (362)
T PRK05031        190 AVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGI------DNVQIIR  260 (362)
T ss_pred             HHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCC------CcEEEEE
Confidence            345555555544333 235799999999999999999875   999999999999999999988 44      6899999


Q ss_pred             ccchhhhHHHhhhcc----------CCceeEEecCcc
Q psy5757          92 LGMIKRIETVELMMK----------FDRYDFLPHAPA  118 (139)
Q Consensus        92 ~d~~~~~~~~~~~~~----------~~~~D~vi~~~~  118 (139)
                      +|+.+.+..+.....          ..+||+|+.+|+
T Consensus       261 ~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP  297 (362)
T PRK05031        261 MSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPP  297 (362)
T ss_pred             CCHHHHHHHHhhcccccccccccccCCCCCEEEECCC
Confidence            998775543321100          125899999998

>PLN02672 methionine S-methyltransferase

Probab=99.21  E-value=1.2e-10  Score=98.26  Aligned_cols=109  Identities=16%  Similarity=0.147  Sum_probs=77.7

Q ss_pred             hhhcccccChHHHHHHHHHhcccC---CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc
Q psy5757           4 VKIGAAIGGISAILTYLSIIQPHL---NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA   79 (139)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~   79 (139)
                      +..+..++++. +..+.+.+....   .++.+|||+|||+|..+..+++..+ .++++++|+|+.+++.|++|++. ++-
T Consensus        91 V~p~VLIPRpe-TE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~  168 (1082)
T PLN02672         91 EIPSIFIPEDW-SFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALD  168 (1082)
T ss_pred             eCCCcccCchh-HHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence            45677788876 444455554211   1346899999999999999999884 56999999999999999999976 220


Q ss_pred             cc----------ccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccc
Q psy5757          80 RL----------LTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAE  119 (139)
Q Consensus        80 ~~----------~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~  119 (139)
                      .+          ...++++++++|+.+.+.     ....+||+|++||+.
T Consensus       169 ~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~-----~~~~~fDlIVSNPPY  213 (1082)
T PLN02672        169 DDGLPVYDGEGKTLLDRVEFYESDLLGYCR-----DNNIELDRIVGCIPQ  213 (1082)
T ss_pred             cccccccccccccccccEEEEECchhhhcc-----ccCCceEEEEECCCc
Confidence            00          002479999999755332     011369999999983

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.21  E-value=5.9e-11  Score=84.44  Aligned_cols=103  Identities=12%  Similarity=0.063  Sum_probs=72.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc------ccccCCcEEEEEccchhhhHH
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA------RLLTDGHIKFVALGMIKRIET  100 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~------~~~~~~~i~~~~~d~~~~~~~  100 (139)
                      .++.++||+|||.|..+..++++.-   +|+|+|+|+.+++.+.+.... ...      ......++++.++|+.+ +. 
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~-  107 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA-LT-  107 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC-CC-
Confidence            5678999999999999999999875   999999999999986443211 000      00012468899999765 21 


Q ss_pred             HhhhccCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         101 VELMMKFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       101 ~~~~~~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                        . ...++||.|+...++|+++...     ....+.++|+|.
T Consensus       108 --~-~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~  147 (213)
T TIGR03840       108 --A-ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR  147 (213)
T ss_pred             --c-ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence              0 1135699999988888776443     344777788874

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=1.7e-10  Score=82.95  Aligned_cols=91  Identities=18%  Similarity=0.233  Sum_probs=75.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ..+++..+.  +.++++|+|.|+|||.++.+|++..++.++|+++|+.++.++.|++|+.. ++     .+++++..+|+
T Consensus        83 ~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----~d~v~~~~~Dv  155 (256)
T COG2519          83 AGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----GDRVTLKLGDV  155 (256)
T ss_pred             HHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----ccceEEEeccc
Confidence            445555554  78999999999999999999999998899999999999999999999998 65     34588999997


Q ss_pred             hhhhHHHhhhccCCceeEEecCcccc
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      .+...       .+.||+|+...+=-
T Consensus       156 ~~~~~-------~~~vDav~LDmp~P  174 (256)
T COG2519         156 REGID-------EEDVDAVFLDLPDP  174 (256)
T ss_pred             ccccc-------ccccCEEEEcCCCh
Confidence            76432       23799999887533

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.19  E-value=4.8e-10  Score=78.40  Aligned_cols=84  Identities=12%  Similarity=0.058  Sum_probs=67.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..+.++||++||+|.++..++.+...  +++++|.++.+++.+++++.. +.     ..+++++.+|+.+.+..+.  ..
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~-----~~~~~~~~~D~~~~l~~~~--~~  118 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKS-----GEQAEVVRNSALRALKFLA--KK  118 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCC-----cccEEEEehhHHHHHHHhh--cc
Confidence            46789999999999999999998753  899999999999999999988 44     2478999999866443221  11


Q ss_pred             CCceeEEecCcccc
Q psy5757         107 FDRYDFLPHAPAES  120 (139)
Q Consensus       107 ~~~~D~vi~~~~~~  120 (139)
                      ...+|+|+..|++.
T Consensus       119 ~~~~dvv~~DPPy~  132 (189)
T TIGR00095       119 PTFDNVIYLDPPFF  132 (189)
T ss_pred             CCCceEEEECcCCC
Confidence            22489999999865

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PTZ00146 fibrillarin; Provisional

Probab=99.19  E-value=7.6e-11  Score=86.98  Aligned_cols=102  Identities=18%  Similarity=0.086  Sum_probs=71.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ++++++|||+|||+|.++..+++...+.+.|+++|+++.+.+...+..+.       ..|+.+++.|+.+.. .+.  ..
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~Da~~p~-~y~--~~  199 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIEDARYPQ-KYR--ML  199 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEECCccChh-hhh--cc
Confidence            57889999999999999999999997778999999998877655554433       267889999975421 111  12


Q ss_pred             CCceeEEecCcccccccccee-eeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVC-INYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~-~~~~~~~p~g~  138 (139)
                      .+++|+|++.....+-..-.. ...+.++|+|.
T Consensus       200 ~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~  232 (293)
T PTZ00146        200 VPMVDVIFADVAQPDQARIVALNAQYFLKNGGH  232 (293)
T ss_pred             cCCCCEEEEeCCCcchHHHHHHHHHHhccCCCE
Confidence            346999999885322110111 12456788875

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.18  E-value=2.1e-10  Score=86.01  Aligned_cols=87  Identities=22%  Similarity=0.266  Sum_probs=63.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhh-ccccccCCcEEEEE-ccchhhhHHHhhhcc
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHS-NARLLTDGHIKFVA-LGMIKRIETVELMMK  106 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~  106 (139)
                      .+.++||||||+|.....++.+. +..+++|+|+++.+++.|++++..+ .   + ..++++++ .|..+.+..+  ..+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~---l-~~~I~~~~~~~~~~i~~~i--~~~  186 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPG---L-NGAIRLRLQKDSKAIFKGI--IHK  186 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccC---C-cCcEEEEEccchhhhhhcc--ccc
Confidence            45799999999999888888776 3569999999999999999999873 2   1 34677754 3322212211  113


Q ss_pred             CCceeEEecCcccccc
Q psy5757         107 FDRYDFLPHAPAESWM  122 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~  122 (139)
                      .++||+|+|||+||--
T Consensus       187 ~~~fDlivcNPPf~~s  202 (321)
T PRK11727        187 NERFDATLCNPPFHAS  202 (321)
T ss_pred             CCceEEEEeCCCCcCc
Confidence            5689999999998854

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.17  E-value=1e-10  Score=83.30  Aligned_cols=109  Identities=15%  Similarity=0.155  Sum_probs=78.3

Q ss_pred             HHHHHHHhccc--CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEc
Q psy5757          16 ILTYLSIIQPH--LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVAL   92 (139)
Q Consensus        16 ~~~~~~~l~~~--~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~   92 (139)
                      +..+.+.+...  ...+.+|||+|||+|..+..+++...   +++++|.++.+++.+++++.. +.      .++++...
T Consensus        30 ~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~  100 (224)
T TIGR01983        30 LDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPL------LKIEYRCT  100 (224)
T ss_pred             HHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeC
Confidence            44455555421  13477999999999999999888653   799999999999999998876 32      36888888


Q ss_pred             cchhhhHHHhhhccCCceeEEecCccccccccceeee---eeeccCCCC
Q psy5757          93 GMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCIN---YTATMPEGS  138 (139)
Q Consensus        93 d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g~  138 (139)
                      |+.+..    .. ..++||+|+++..+|++.++....   .+.+.|+|.
T Consensus       101 d~~~~~----~~-~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~  144 (224)
T TIGR01983       101 SVEDLA----EK-GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGI  144 (224)
T ss_pred             CHHHhh----cC-CCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcE
Confidence            854421    11 135799999999999988775332   455666663

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.17  E-value=4.1e-10  Score=82.54  Aligned_cols=80  Identities=18%  Similarity=0.216  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .+++.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++++++ +.      .++++++.|..+ +.   .  
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~-~~---~--  136 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------LNVAVTNFDGRV-FG---A--  136 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEecCCHHH-hh---h--
Confidence            57889999999999999999999886667999999999999999999988 54      678999999654 21   1  


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ..+.||+|+++++
T Consensus       137 ~~~~fD~Vl~D~P  149 (264)
T TIGR00446       137 AVPKFDAILLDAP  149 (264)
T ss_pred             hccCCCEEEEcCC
Confidence            2345999998876

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.16  E-value=3e-10  Score=87.02  Aligned_cols=99  Identities=12%  Similarity=0.115  Sum_probs=71.9

Q ss_pred             ccccc-ChHHHHHHHHHhcccC--CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757           7 GAAIG-GISAILTYLSIIQPHL--NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL   82 (139)
Q Consensus         7 ~~~~~-~~~~~~~~~~~l~~~~--~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~   82 (139)
                      ++++. .......+.+.+.+.+  .++.++||++||+|.++..++....   +++++|+++.+++.|+++++. +.    
T Consensus       208 ~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~----  280 (374)
T TIGR02085       208 QSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGL----  280 (374)
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCC----
Confidence            34443 3333444444443322  3567999999999999999997653   899999999999999999988 54    


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccc
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAE  119 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~  119 (139)
                        .+++++.+|+.+....     ...+||+|+.+|+-
T Consensus       281 --~~~~~~~~d~~~~~~~-----~~~~~D~vi~DPPr  310 (374)
T TIGR02085       281 --DNLSFAALDSAKFATA-----QMSAPELVLVNPPR  310 (374)
T ss_pred             --CcEEEEECCHHHHHHh-----cCCCCCEEEECCCC
Confidence              6899999997553221     12359999999983

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.16  E-value=3.8e-10  Score=88.26  Aligned_cols=81  Identities=21%  Similarity=0.238  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++++ +.      .+++++++|+.+....+    
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~----  317 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVHEKF----  317 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCcccccchh----
Confidence            46788999999999999999999875567999999999999999999988 54      67999999976522111    


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                       .++||+|+++++
T Consensus       318 -~~~fD~Vl~D~P  329 (444)
T PRK14902        318 -AEKFDKILVDAP  329 (444)
T ss_pred             -cccCCEEEEcCC
Confidence             156999999876

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.15  E-value=5e-10  Score=85.23  Aligned_cols=95  Identities=14%  Similarity=0.176  Sum_probs=70.1

Q ss_pred             HHHHHHHHhcccCC-CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEc
Q psy5757          15 AILTYLSIIQPHLN-ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVAL   92 (139)
Q Consensus        15 ~~~~~~~~l~~~~~-~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~   92 (139)
                      ....+.+.+...+. .+.++||++||+|.++..+++...   +++++|+++++++.|++++.. ++      .+++++.+
T Consensus       182 ~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~  252 (353)
T TIGR02143       182 VNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNI------DNVQIIRM  252 (353)
T ss_pred             HHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEc
Confidence            34455555543333 235799999999999999999875   899999999999999999988 44      68999999


Q ss_pred             cchhhhHHHhhh--c---c-----CCceeEEecCcc
Q psy5757          93 GMIKRIETVELM--M---K-----FDRYDFLPHAPA  118 (139)
Q Consensus        93 d~~~~~~~~~~~--~---~-----~~~~D~vi~~~~  118 (139)
                      |+.+.+......  .   .     ...+|+|+.+|+
T Consensus       253 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP  288 (353)
T TIGR02143       253 SAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP  288 (353)
T ss_pred             CHHHHHHHHhhccccccccccccccCCCCEEEECCC
Confidence            987644321000  0   0     113799999998

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK00811 spermidine synthase; Provisional

Probab=99.15  E-value=1.8e-10  Score=85.25  Aligned_cols=104  Identities=14%  Similarity=0.116  Sum_probs=74.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ++.++||++|||+|..+..+++... ..+++++|+++.+++.|++.+.. +. ..+..++++++.+|+.+.+..     .
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~-~~~~d~rv~v~~~Da~~~l~~-----~  147 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAG-GAYDDPRVELVIGDGIKFVAE-----T  147 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhcc-ccccCCceEEEECchHHHHhh-----C
Confidence            4667999999999999999988642 34899999999999999998864 21 012357899999998764432     3


Q ss_pred             CCceeEEecCccccccccc-------eeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIP-------VCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p-------~~~~~~~~~p~g~  138 (139)
                      .++||+|+++.+-++....       .....+.+.|+|.
T Consensus       148 ~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGv  186 (283)
T PRK00811        148 ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGI  186 (283)
T ss_pred             CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcE
Confidence            4689999998754432211       1233566677774

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.14  E-value=5.9e-10  Score=77.58  Aligned_cols=95  Identities=18%  Similarity=0.188  Sum_probs=68.1

Q ss_pred             HHHHHhcccC-CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          18 TYLSIIQPHL-NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        18 ~~~~~l~~~~-~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      .+-++|. .. .++.++||+.||||..+...+.+...  +|+.+|.++.++...+++++. +.     ..+++++..|..
T Consensus        31 alFniL~-~~~~~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~~d~~  102 (183)
T PF03602_consen   31 ALFNILQ-PRNLEGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIKGDAF  102 (183)
T ss_dssp             HHHHHHH-CH-HTT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHH
T ss_pred             HHHHHhc-ccccCCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCC-----CcceeeeccCHH
Confidence            3444443 23 57899999999999999988888754  999999999999999999998 55     346899999977


Q ss_pred             hhhHHHhhhccCCceeEEecCcccccc
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~  122 (139)
                      ..+.+..  ....+||+|+..|++..-
T Consensus       103 ~~l~~~~--~~~~~fDiIflDPPY~~~  127 (183)
T PF03602_consen  103 KFLLKLA--KKGEKFDIIFLDPPYAKG  127 (183)
T ss_dssp             HHHHHHH--HCTS-EEEEEE--STTSC
T ss_pred             HHHHhhc--ccCCCceEEEECCCcccc
Confidence            6555432  235789999999997654

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.14  E-value=3.1e-10  Score=88.38  Aligned_cols=87  Identities=14%  Similarity=0.121  Sum_probs=67.4

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~   96 (139)
                      .....+.  ..++.+|||+|||+|..+..+++..+ .++++++|+++.+++.+++++.. +.       +++++++|+.+
T Consensus       235 ~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~  304 (427)
T PRK10901        235 LAATLLA--PQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARD  304 (427)
T ss_pred             HHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCccc
Confidence            3344443  56889999999999999999999884 36999999999999999999988 43       36788899764


Q ss_pred             hhHHHhhhccCCceeEEecCcc
Q psy5757          97 RIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        97 ~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                       +..   ....++||.|+++++
T Consensus       305 -~~~---~~~~~~fD~Vl~D~P  322 (427)
T PRK10901        305 -PAQ---WWDGQPFDRILLDAP  322 (427)
T ss_pred             -chh---hcccCCCCEEEECCC
Confidence             211   112357999998876

>KOG2915|consensus

Probab=99.13  E-value=4.1e-10  Score=81.63  Aligned_cols=103  Identities=20%  Similarity=0.318  Sum_probs=86.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ++.++..|+  +.+|.+|+|-|+|+|+++.++++...|.++++.+|+.+...+.|.+.++. ++     .+++++.+.|+
T Consensus        94 ia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----~~~vt~~hrDV  166 (314)
T KOG2915|consen   94 IAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----GDNVTVTHRDV  166 (314)
T ss_pred             HHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----CcceEEEEeec
Confidence            456677775  79999999999999999999999999999999999999999999999998 76     58999999996


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccceeee
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCIN  129 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~  129 (139)
                      ..    ..+..+..++|.|+...+--|...|-...
T Consensus       167 c~----~GF~~ks~~aDaVFLDlPaPw~AiPha~~  197 (314)
T KOG2915|consen  167 CG----SGFLIKSLKADAVFLDLPAPWEAIPHAAK  197 (314)
T ss_pred             cc----CCccccccccceEEEcCCChhhhhhhhHH
Confidence            54    22233456799999999988888776554

>KOG0820|consensus

Probab=99.12  E-value=7.7e-10  Score=80.23  Aligned_cols=92  Identities=21%  Similarity=0.282  Sum_probs=74.2

Q ss_pred             cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEE
Q psy5757          11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKF   89 (139)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~   89 (139)
                      ..+.++..+.+...  ++++..|||+|.|||.+|..+.+...   +|+++|+++.++...+++.+. ..     ..+.++
T Consensus        42 kNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp~-----~~kLqV  111 (315)
T KOG0820|consen   42 KNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTPK-----SGKLQV  111 (315)
T ss_pred             cCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCCc-----cceeeE
Confidence            34555666666654  78999999999999999999999997   999999999999999998876 22     468999


Q ss_pred             EEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          90 VALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      +++|+.+        .+.-.||.+|+|.+++
T Consensus       112 ~~gD~lK--------~d~P~fd~cVsNlPyq  134 (315)
T KOG0820|consen  112 LHGDFLK--------TDLPRFDGCVSNLPYQ  134 (315)
T ss_pred             Eeccccc--------CCCcccceeeccCCcc
Confidence            9999754        1223599999998754

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=99.12  E-value=1.3e-09  Score=80.83  Aligned_cols=105  Identities=11%  Similarity=0.170  Sum_probs=76.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+++.+.  ..++..++|++||.|+.+..+++..++.++|+|+|.|+++++.|++++..       ..+++++++|+.
T Consensus         8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~~f~   78 (296)
T PRK00050          8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHGNFS   78 (296)
T ss_pred             HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeCCHH
Confidence            455666664  46778999999999999999999986678999999999999999988754       268999999977


Q ss_pred             hhhHHHhhhccCCceeEEecCcc--ccccccc-eeeeee
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPA--ESWMNIP-VCINYT  131 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~--~~~~~~p-~~~~~~  131 (139)
                      + +...... ...++|.|+++.-  .+.+.++ .|+.|.
T Consensus        79 ~-l~~~l~~-~~~~vDgIl~DLGvSs~Qld~~~RGFSf~  115 (296)
T PRK00050         79 N-LKEVLAE-GLGKVDGILLDLGVSSPQLDDAERGFSFR  115 (296)
T ss_pred             H-HHHHHHc-CCCccCEEEECCCccccccCCCcCCcccC
Confidence            6 3322111 2237999988875  3333333 344453

>KOG3420|consensus

Probab=99.11  E-value=2.5e-10  Score=75.75  Aligned_cols=102  Identities=19%  Similarity=0.221  Sum_probs=78.2

Q ss_pred             hhcccccChHHHHHHHHHhcccC--CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHL--NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLL   82 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~   82 (139)
                      +.-+..++|++...|+..+-+-.  ..|++++|+|||.|-++...+.-..  ..++|+|++|++++.+.+|+...     
T Consensus        22 ~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEf-----   94 (185)
T KOG3420|consen   22 LLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEF-----   94 (185)
T ss_pred             hhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHh-----
Confidence            44567788888888888885433  4789999999999999855554332  38999999999999999998871     


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                       +-++++++.|+.+ .+     ...+.||.++.||+|.
T Consensus        95 -EvqidlLqcdild-le-----~~~g~fDtaviNppFG  125 (185)
T KOG3420|consen   95 -EVQIDLLQCDILD-LE-----LKGGIFDTAVINPPFG  125 (185)
T ss_pred             -hhhhheeeeeccc-hh-----ccCCeEeeEEecCCCC
Confidence             1367888888665 21     2347799999999875

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.11  E-value=8.3e-10  Score=86.39  Aligned_cols=79  Identities=16%  Similarity=0.190  Sum_probs=65.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||+|+.+..+++.....++++++|+++.+++.+++++.. +.      .+++++++|+.+. .      
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~-~------  314 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSF-S------  314 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCccccc-c------
Confidence            46788999999999999999999876567999999999999999999988 54      6899999996541 1      


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      +..+||+|+++++
T Consensus       315 ~~~~fD~Vl~D~P  327 (445)
T PRK14904        315 PEEQPDAILLDAP  327 (445)
T ss_pred             cCCCCCEEEEcCC
Confidence            2357999998654

>KOG1663|consensus

Probab=99.11  E-value=5.3e-10  Score=79.27  Aligned_cols=100  Identities=17%  Similarity=0.214  Sum_probs=83.5

Q ss_pred             ChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEE
Q psy5757          12 GISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFV   90 (139)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~   90 (139)
                      ++.....+...+.  ....++++|+|.=||+-+..+|...++.++++++|+++...+.+.+..+. +.     ..+++++
T Consensus        58 ~~d~g~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~i  130 (237)
T KOG1663|consen   58 GPDKGQFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITFI  130 (237)
T ss_pred             ChHHHHHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeeee
Confidence            4444444444443  46678999999999999999999999899999999999999999888887 76     6899999


Q ss_pred             EccchhhhHHHhhhccCCceeEEecCcc
Q psy5757          91 ALGMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        91 ~~d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      +++..+.+.++....+.++||++|...-
T Consensus       131 ~g~a~esLd~l~~~~~~~tfDfaFvDad  158 (237)
T KOG1663|consen  131 EGPALESLDELLADGESGTFDFAFVDAD  158 (237)
T ss_pred             ecchhhhHHHHHhcCCCCceeEEEEccc
Confidence            9999998888766667789999988764

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.11  E-value=5.2e-10  Score=80.25  Aligned_cols=97  Identities=18%  Similarity=0.252  Sum_probs=71.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++.+|||+|||+|.++..+++..   ++++++|+++.+++.++++.....      .++++...|+.+ +.   . ...
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~-~~---~-~~~  112 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEE-LA---A-EHP  112 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHH-hh---h-hcC
Confidence            467899999999999999998864   389999999999999998876511      256777777543 21   1 124


Q ss_pred             CceeEEecCccccccccceee---eeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      ++||+|++...+++..++...   ..+.+.|+|.
T Consensus       113 ~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~  146 (233)
T PRK05134        113 GQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGL  146 (233)
T ss_pred             CCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcE
Confidence            689999999998988776432   2455566663

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.11  E-value=1.1e-09  Score=85.34  Aligned_cols=81  Identities=16%  Similarity=0.238  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||+|+.+..+++..++.++++++|+++.+++.+++++.+ +.      .+++++++|+.+ +..    .
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~-l~~----~  303 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAER-LTE----Y  303 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhh-hhh----h
Confidence            57888999999999999999999986677999999999999999999988 54      678999999665 221    1


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ..++||.|+++++
T Consensus       304 ~~~~fD~Vl~DaP  316 (431)
T PRK14903        304 VQDTFDRILVDAP  316 (431)
T ss_pred             hhccCCEEEECCC
Confidence            1356999998766

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.09  E-value=4.7e-10  Score=76.41  Aligned_cols=76  Identities=20%  Similarity=0.290  Sum_probs=55.5

Q ss_pred             eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc-
Q psy5757          32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR-  109 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~-  109 (139)
                      .|+|+.||.|+.+..+|+...   +|+++|+++..++.|+.+++- +.     .++++++++|+.+...++    .... 
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~~~~~~~----~~~~~   69 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFFELLKRL----KSNKI   69 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHGGGB---------
T ss_pred             EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHHHHHhhc----ccccc
Confidence            689999999999999999986   999999999999999999988 65     579999999976643322    2222 


Q ss_pred             eeEEecCccc
Q psy5757         110 YDFLPHAPAE  119 (139)
Q Consensus       110 ~D~vi~~~~~  119 (139)
                      +|+|+.+|+.
T Consensus        70 ~D~vFlSPPW   79 (163)
T PF09445_consen   70 FDVVFLSPPW   79 (163)
T ss_dssp             -SEEEE---B
T ss_pred             ccEEEECCCC
Confidence            7999999984

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG3010|consensus

Probab=99.09  E-value=5.4e-11  Score=84.77  Aligned_cols=93  Identities=17%  Similarity=0.276  Sum_probs=66.7

Q ss_pred             eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCcee
Q psy5757          32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYD  111 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  111 (139)
                      .++|+|||+|..++.+++..+   +|+|+|+++.|++.|++.....-+    --.......++      ..+....+++|
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~----~t~~~ms~~~~------v~L~g~e~SVD  102 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYC----HTPSTMSSDEM------VDLLGGEESVD  102 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccc----cCCcccccccc------ccccCCCccee
Confidence            789999999999999999987   999999999999988876432000    00111111111      11233467899


Q ss_pred             EEecCccccccccc--eeeeeeeccCCC
Q psy5757         112 FLPHAPAESWMNIP--VCINYTATMPEG  137 (139)
Q Consensus       112 ~vi~~~~~~~~~~p--~~~~~~~~~p~g  137 (139)
                      +|++..++||+.-+  ....|+.++++|
T Consensus       103 lI~~Aqa~HWFdle~fy~~~~rvLRk~G  130 (261)
T KOG3010|consen  103 LITAAQAVHWFDLERFYKEAYRVLRKDG  130 (261)
T ss_pred             eehhhhhHHhhchHHHHHHHHHHcCCCC
Confidence            99999999998865  455588888887

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.08  E-value=1e-09  Score=84.13  Aligned_cols=88  Identities=14%  Similarity=0.153  Sum_probs=72.6

Q ss_pred             HhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHH
Q psy5757          22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIET  100 (139)
Q Consensus        22 ~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~  100 (139)
                      ++..... |++||++.|-||.++...+.....  +|+++|.|..++++|++|+.. ++    ...++.++++|+.+.+..
T Consensus       211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~----~~~~~~~i~~Dvf~~l~~  283 (393)
T COG1092         211 ALGELAA-GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGL----DGDRHRFIVGDVFKWLRK  283 (393)
T ss_pred             HHhhhcc-CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCC----CccceeeehhhHHHHHHH
Confidence            3333335 999999999999999999998754  999999999999999999998 53    346689999999987765


Q ss_pred             HhhhccCCceeEEecCcc
Q psy5757         101 VELMMKFDRYDFLPHAPA  118 (139)
Q Consensus       101 ~~~~~~~~~~D~vi~~~~  118 (139)
                      ...  ...+||+|+..|+
T Consensus       284 ~~~--~g~~fDlIilDPP  299 (393)
T COG1092         284 AER--RGEKFDLIILDPP  299 (393)
T ss_pred             HHh--cCCcccEEEECCc
Confidence            432  3558999999997

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.08  E-value=5.5e-10  Score=79.76  Aligned_cols=104  Identities=14%  Similarity=0.037  Sum_probs=72.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc------ccccCCcEEEEEccchhhhH
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA------RLLTDGHIKFVALGMIKRIE   99 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~------~~~~~~~i~~~~~d~~~~~~   99 (139)
                      ..++.+|||+|||.|..+..|+++.-   +|+|+|+|+.+++.+.+.... ...      ......++++.++|+.+ +.
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~-l~  110 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA-LT  110 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC-CC
Confidence            35678999999999999999999764   999999999999987432211 000      00113578999999765 21


Q ss_pred             HHhhhccCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757         100 TVELMMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus       100 ~~~~~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                          .....+||.|+...++|+++..     .....+.++|+|.
T Consensus       111 ----~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~  150 (218)
T PRK13255        111 ----AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR  150 (218)
T ss_pred             ----cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence                1123579999998888877543     2344666777764

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.08  E-value=3e-10  Score=79.15  Aligned_cols=76  Identities=17%  Similarity=0.329  Sum_probs=56.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM  104 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~  104 (139)
                      ++++.+|||+|||+|.++..+++...+.++++++|+++.+         .       .++++++++|+.+.  .+.+...
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~~~~~d~~~~~~~~~l~~~   93 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVDFIRGDFTDEEVLNKIRER   93 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCceEEEeeCCChhHHHHHHHH
Confidence            5788999999999999999999988656689999999853         1       15677888886541  1112112


Q ss_pred             ccCCceeEEecCcc
Q psy5757         105 MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 ~~~~~~D~vi~~~~  118 (139)
                      .+.++||+|+++.+
T Consensus        94 ~~~~~~D~V~~~~~  107 (188)
T TIGR00438        94 VGDDKVDVVMSDAA  107 (188)
T ss_pred             hCCCCccEEEcCCC
Confidence            23557999999764

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.08  E-value=9.4e-10  Score=90.33  Aligned_cols=81  Identities=6%  Similarity=0.082  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++++|||+|||+|.++..++....  .+|+++|+|+.+++.|++++.. ++    ...+++++++|+.+.+..+     
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~----~~~~v~~i~~D~~~~l~~~-----  605 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGL----SGRQHRLIQADCLAWLKEA-----  605 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCC----CccceEEEEccHHHHHHHc-----
Confidence            4578999999999999999998753  2799999999999999999988 44    1147999999987744322     


Q ss_pred             CCceeEEecCccc
Q psy5757         107 FDRYDFLPHAPAE  119 (139)
Q Consensus       107 ~~~~D~vi~~~~~  119 (139)
                      ..+||+|+++|+.
T Consensus       606 ~~~fDlIilDPP~  618 (702)
T PRK11783        606 REQFDLIFIDPPT  618 (702)
T ss_pred             CCCcCEEEECCCC
Confidence            3579999999973

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.07  E-value=3.8e-10  Score=83.27  Aligned_cols=85  Identities=20%  Similarity=0.239  Sum_probs=59.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCc-EEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGH-IKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..|++|||||||+|+.+..++.+...  .|+|+|.++......+-.-..     ++.+. +..+...    ++.++.   
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~-----lg~~~~~~~lplg----vE~Lp~---  179 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHF-----LGQDPPVFELPLG----VEDLPN---  179 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHH-----hCCCccEEEcCcc----hhhccc---
Confidence            46889999999999999999998753  899999987765553222222     11122 3333222    444322   


Q ss_pred             CCceeEEecCccccccccce
Q psy5757         107 FDRYDFLPHAPAESWMNIPV  126 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~  126 (139)
                      .++||+|+|-.++.|..+|.
T Consensus       180 ~~~FDtVF~MGVLYHrr~Pl  199 (315)
T PF08003_consen  180 LGAFDTVFSMGVLYHRRSPL  199 (315)
T ss_pred             cCCcCEEEEeeehhccCCHH
Confidence            46799999999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.07  E-value=1.7e-09  Score=84.38  Aligned_cols=84  Identities=17%  Similarity=0.166  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .+++.+|||+|||+|+.+..+++..+..++++++|+++.+++.+++++.+ +.      .+++++++|+.+.....  ..
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~--~~  321 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLLELK--PQ  321 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhccccc--cc
Confidence            57789999999999999999999886667999999999999999999988 54      68999999966521100  01


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ..++||.|+++++
T Consensus       322 ~~~~fD~Vl~DaP  334 (434)
T PRK14901        322 WRGYFDRILLDAP  334 (434)
T ss_pred             ccccCCEEEEeCC
Confidence            1357999998765

>KOG1541|consensus

Probab=99.07  E-value=4e-10  Score=79.53  Aligned_cols=91  Identities=20%  Similarity=0.345  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhcccCCC--CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEE
Q psy5757          14 SAILTYLSIIQPHLNE--NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVA   91 (139)
Q Consensus        14 ~~~~~~~~~l~~~~~~--~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~   91 (139)
                      ++..+.++.+.  ++.  ...|||||||||-.+..+.... .  ..+|+|+|+.|++.|.+.--          .-+++.
T Consensus        35 em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~G-h--~wiGvDiSpsML~~a~~~e~----------egdlil   99 (270)
T KOG1541|consen   35 EMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSG-H--QWIGVDISPSMLEQAVEREL----------EGDLIL   99 (270)
T ss_pred             HHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCC-c--eEEeecCCHHHHHHHHHhhh----------hcCeee
Confidence            34667777775  444  5689999999999988888766 3  88999999999999987321          134677


Q ss_pred             ccchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757          92 LGMIKRIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        92 ~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                      .|+=++++     ...++||-+|+-.+.+|+-.
T Consensus       100 ~DMG~Glp-----frpGtFDg~ISISAvQWLcn  127 (270)
T KOG1541|consen  100 CDMGEGLP-----FRPGTFDGVISISAVQWLCN  127 (270)
T ss_pred             eecCCCCC-----CCCCccceEEEeeeeeeecc
Confidence            77655544     34689999999999999653

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.06  E-value=7.5e-10  Score=86.18  Aligned_cols=90  Identities=11%  Similarity=0.049  Sum_probs=65.7

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      ..+...+.  ..++.+|||+|||+|+.+..+++..+ .++++++|+++.+++.+++++++ +.     ..++++..+|..
T Consensus       228 ~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~-----~~~v~~~~~d~~  299 (426)
T TIGR00563       228 QWVATWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGL-----TIKAETKDGDGR  299 (426)
T ss_pred             HHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeccccc
Confidence            34455554  46789999999999999999999885 67999999999999999999988 54     123344556643


Q ss_pred             hhhHHHhhhccCCceeEEecCcc
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      + ..   ......+||.|+++++
T Consensus       300 ~-~~---~~~~~~~fD~VllDaP  318 (426)
T TIGR00563       300 G-PS---QWAENEQFDRILLDAP  318 (426)
T ss_pred             c-cc---ccccccccCEEEEcCC
Confidence            2 11   1012357999997654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PLN02366 spermidine synthase

Probab=99.04  E-value=1.1e-09  Score=81.79  Aligned_cols=104  Identities=16%  Similarity=0.099  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ++.++||++|||.|.....+++.. +..+++.+|+++.+++.+++.+.. +.  .+..++++++.+|+.+.+.+    .+
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~----~~  162 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKN----AP  162 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhh----cc
Confidence            567899999999999999998874 334899999999999999998764 21  13457899999998764442    12


Q ss_pred             CCceeEEecCccccccccc-------eeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIP-------VCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p-------~~~~~~~~~p~g~  138 (139)
                      .++||+|++...-++.+..       .....+.+.|+|.
T Consensus       163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGv  201 (308)
T PLN02366        163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGV  201 (308)
T ss_pred             CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcE
Confidence            4579999998765432211       2233556677774

>PRK03612 spermidine synthase; Provisional

Probab=99.02  E-value=1.1e-09  Score=87.28  Aligned_cols=105  Identities=14%  Similarity=0.164  Sum_probs=74.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH--HhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI--LHSNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~--~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ++.++|||+|||+|..+..+++.. +..+++++|+|+++++.++++.  ..-....+..++++++.+|+.+.+..     
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-----  369 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK-----  369 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-----
Confidence            566899999999999999998753 2259999999999999999842  22000012347899999998764432     


Q ss_pred             cCCceeEEecCccccccccc--------eeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIP--------VCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p--------~~~~~~~~~p~g~  138 (139)
                      ..++||+|+++.+.++.+.+        .....+.++|+|.
T Consensus       370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~  410 (521)
T PRK03612        370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGL  410 (521)
T ss_pred             CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeE
Confidence            23579999999875543322        1233567777774

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.00  E-value=7.1e-09  Score=71.91  Aligned_cols=96  Identities=16%  Similarity=0.181  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCc--------eEEEEeCCHHHHHHHHHHHHh-hcccccc
Q psy5757          13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG--------QVIGIEHVPQLVNSSIQNILH-SNARLLT   83 (139)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~--------~v~~~d~~~~~~~~a~~~~~~-~~~~~~~   83 (139)
                      +.....++....  .+++..+||..||+|.+..+.+.....-.        +++|.|+++.+++.|++++.. +.     
T Consensus        14 ~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----   86 (179)
T PF01170_consen   14 PTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----   86 (179)
T ss_dssp             HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----
Confidence            333444444333  57888999999999999999888774222        289999999999999999988 65     


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      ...+++...|+.+ ++     ...+++|+|++||++..
T Consensus        87 ~~~i~~~~~D~~~-l~-----~~~~~~d~IvtnPPyG~  118 (179)
T PF01170_consen   87 EDYIDFIQWDARE-LP-----LPDGSVDAIVTNPPYGR  118 (179)
T ss_dssp             CGGEEEEE--GGG-GG-----GTTSBSCEEEEE--STT
T ss_pred             CCceEEEecchhh-cc-----cccCCCCEEEECcchhh
Confidence            4568899989665 22     23568999999999664

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR00417 speE spermidine synthase

Probab=99.00  E-value=2e-09  Score=79.12  Aligned_cols=103  Identities=13%  Similarity=0.100  Sum_probs=73.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +.+++||++|||+|..+..+++.. +..+++++|+++++++.+++.+.. +.  .+..++++++.+|+.+.+.+     .
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~-----~  142 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLAD-----T  142 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHh-----C
Confidence            445699999999999999998875 234899999999999999998754 21  12346788999997664432     2


Q ss_pred             CCceeEEecCccccccccc-------eeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIP-------VCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p-------~~~~~~~~~p~g~  138 (139)
                      .++||+|+++...+.....       .....+.+.|+|.
T Consensus       143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~  181 (270)
T TIGR00417       143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGI  181 (270)
T ss_pred             CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcE
Confidence            4679999998764432211       1233566777774

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG3191|consensus

Probab=98.99  E-value=2.6e-09  Score=73.31  Aligned_cols=77  Identities=18%  Similarity=0.371  Sum_probs=66.0

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      .+-++|||||||..+.+++....+.....+.|++|++++...+.+..+.      .+++.++.|...+++       .++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~~l~-------~~~  110 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLSGLR-------NES  110 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHhhhc-------cCC
Confidence            5678999999999999999999888889999999999999888877632      568889999777665       278


Q ss_pred             eeEEecCccc
Q psy5757         110 YDFLPHAPAE  119 (139)
Q Consensus       110 ~D~vi~~~~~  119 (139)
                      +|+++.||++
T Consensus       111 VDvLvfNPPY  120 (209)
T KOG3191|consen  111 VDVLVFNPPY  120 (209)
T ss_pred             ccEEEECCCc
Confidence            9999999984

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.99  E-value=1.8e-09  Score=66.42  Aligned_cols=95  Identities=14%  Similarity=0.169  Sum_probs=66.6

Q ss_pred             eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCcee
Q psy5757          32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYD  111 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  111 (139)
                      +++|+|||+|..+..+++.  ...+++++|.++..+..+++......     ..+++++..|..+...     ....++|
T Consensus         1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~d   68 (107)
T cd02440           1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEELPP-----EADESFD   68 (107)
T ss_pred             CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhccc-----ccceEEEEcChhhhcc-----ccCCceE
Confidence            4899999999999999882  34599999999999999986443311     3678899988655211     1245799


Q ss_pred             EEecCccccc-cccce---eeeeeeccCCCC
Q psy5757         112 FLPHAPAESW-MNIPV---CINYTATMPEGS  138 (139)
Q Consensus       112 ~vi~~~~~~~-~~~p~---~~~~~~~~p~g~  138 (139)
                      +++++.++++ ...+.   ......+.|+|.
T Consensus        69 ~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~   99 (107)
T cd02440          69 VIISDPPLHHLVEDLARFLEEARRLLKPGGV   99 (107)
T ss_pred             EEEEccceeehhhHHHHHHHHHHHHcCCCCE
Confidence            9999999887 33222   222344556653

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=3.5e-09  Score=82.37  Aligned_cols=95  Identities=16%  Similarity=0.169  Sum_probs=74.3

Q ss_pred             ChHHHHHHHHHhcccC--CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEE
Q psy5757          12 GISAILTYLSIIQPHL--NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIK   88 (139)
Q Consensus        12 ~~~~~~~~~~~l~~~~--~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~   88 (139)
                      .+.+...+..+..+++  .+++++||+-||.|.++..+++...   +|+|+|+++++++.|+++++. +.      .|++
T Consensus       274 N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n~i------~N~~  344 (432)
T COG2265         274 NPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAANGI------DNVE  344 (432)
T ss_pred             CHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHcCC------CcEE
Confidence            3444455555554444  4678999999999999999998876   999999999999999999999 55      7899


Q ss_pred             EEEccchhhhHHHhhhccCCceeEEecCcc
Q psy5757          89 FVALGMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        89 ~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      ++.++..+......   ....+|+|+.+|+
T Consensus       345 f~~~~ae~~~~~~~---~~~~~d~VvvDPP  371 (432)
T COG2265         345 FIAGDAEEFTPAWW---EGYKPDVVVVDPP  371 (432)
T ss_pred             EEeCCHHHHhhhcc---ccCCCCEEEECCC
Confidence            99999776433221   2346899999997

>PRK01581 speE spermidine synthase; Validated

Probab=98.98  E-value=2.3e-09  Score=81.35  Aligned_cols=106  Identities=12%  Similarity=0.094  Sum_probs=72.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH--HhhccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI--LHSNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~--~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      ....++||++|||+|.....+.+.. +..+++++|+++++++.|++..  ....+..+..++++++++|+.+.+..    
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----  222 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS----  222 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh----
Confidence            3556799999999999988888765 3459999999999999999732  11011113357999999998775442    


Q ss_pred             ccCCceeEEecCccccccc--------cceeeeeeeccCCCC
Q psy5757         105 MKFDRYDFLPHAPAESWMN--------IPVCINYTATMPEGS  138 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~--------~p~~~~~~~~~p~g~  138 (139)
                       ..++||+|+++.+-....        +......+.+.|+|.
T Consensus       223 -~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV  263 (374)
T PRK01581        223 -PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGA  263 (374)
T ss_pred             -cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcE
Confidence             245799999996422110        112233566777774

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.97  E-value=2.7e-09  Score=85.06  Aligned_cols=111  Identities=9%  Similarity=0.105  Sum_probs=80.1

Q ss_pred             hhcccccChHHHHHHHHHhcccCC-----CCCeEEEEcccCChhHHHHHHHcCC-------CceEEEEeCCHHHHHHHHH
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLN-----ENSKVLEIGSGSGYLTNMISELMNS-------TGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~iLdiG~G~G~~~~~l~~~~~~-------~~~v~~~d~~~~~~~~a~~   72 (139)
                      ..|+.++++.++..+++.+.+...     ...+|+|.+||+|.+...+++....       ..+++++|+++.++..++.
T Consensus         2 ~~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~   81 (524)
T TIGR02987         2 AYGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK   81 (524)
T ss_pred             CCcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence            468999999999999998854322     4468999999999999999887631       2478999999999999999


Q ss_pred             HHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccc
Q psy5757          73 NILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus        73 ~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~  122 (139)
                      ++.. +.      ..+.+...|........ .....+.||+|+.||++...
T Consensus        82 ~l~~~~~------~~~~i~~~d~l~~~~~~-~~~~~~~fD~IIgNPPy~~~  125 (524)
T TIGR02987        82 LLGEFAL------LEINVINFNSLSYVLLN-IESYLDLFDIVITNPPYGRL  125 (524)
T ss_pred             HHhhcCC------CCceeeecccccccccc-cccccCcccEEEeCCCcccc
Confidence            8876 21      23455656544211100 11123579999999997654

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.97  E-value=1.4e-08  Score=70.42  Aligned_cols=84  Identities=17%  Similarity=0.207  Sum_probs=69.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      -.+.++||+.+|||.++...+.+...  +++.+|.+..+....++|++. +.     ..+.+++..|....++++..   
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~-----~~~~~~~~~da~~~L~~~~~---  111 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGL-----EGEARVLRNDALRALKQLGT---  111 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCC-----ccceEEEeecHHHHHHhcCC---
Confidence            56789999999999999999999854  999999999999999999988 54     47888999997754443211   


Q ss_pred             CCceeEEecCccccc
Q psy5757         107 FDRYDFLPHAPAESW  121 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~  121 (139)
                      -..||+|+..|++++
T Consensus       112 ~~~FDlVflDPPy~~  126 (187)
T COG0742         112 REPFDLVFLDPPYAK  126 (187)
T ss_pred             CCcccEEEeCCCCcc
Confidence            125999999999984

>KOG4300|consensus

Probab=98.95  E-value=5.6e-10  Score=78.13  Aligned_cols=97  Identities=15%  Similarity=0.154  Sum_probs=73.2

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEE-EEEccchhhhHHHhhhccCCc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIK-FVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~-~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      ..+||+|||||..-.+.--  .|.++|+++|.++.|-+.+.+.+..+.     ..++. +++++..+ ++++    ..++
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k-----~~~~~~fvva~ge~-l~~l----~d~s  145 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKK-----PLQVERFVVADGEN-LPQL----ADGS  145 (252)
T ss_pred             cceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhcc-----CcceEEEEeechhc-Cccc----ccCC
Confidence            3689999999987655432  245699999999999999999887722     35666 88888655 4433    4678


Q ss_pred             eeEEecCccccccccceeee---eeeccCCCCC
Q psy5757         110 YDFLPHAPAESWMNIPVCIN---YTATMPEGSY  139 (139)
Q Consensus       110 ~D~vi~~~~~~~~~~p~~~~---~~~~~p~g~~  139 (139)
                      +|+|++..++=-..+|....   -+.+.|||.|
T Consensus       146 ~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~i  178 (252)
T KOG4300|consen  146 YDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRI  178 (252)
T ss_pred             eeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEE
Confidence            99999999988888876443   6778888864

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.95  E-value=2.4e-08  Score=73.84  Aligned_cols=82  Identities=13%  Similarity=0.176  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..+++|||+.|-||+++...+.....  +|+++|.|..+++++++++.. ++    ...+++++..|+.+.+.++..   
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~--~v~~VD~S~~al~~a~~N~~lNg~----~~~~~~~~~~Dvf~~l~~~~~---  192 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAK--EVVSVDSSKRALEWAKENAALNGL----DLDRHRFIQGDVFKFLKRLKK---  192 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTES--EEEEEES-HHHHHHHHHHHHHTT-----CCTCEEEEES-HHHHHHHHHH---
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCC----CccceEEEecCHHHHHHHHhc---
Confidence            45789999999999999998876643  899999999999999999988 43    346899999999886665432   


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      .++||+||+.|+
T Consensus       193 ~~~fD~IIlDPP  204 (286)
T PF10672_consen  193 GGRFDLIILDPP  204 (286)
T ss_dssp             TT-EEEEEE--S
T ss_pred             CCCCCEEEECCC
Confidence            358999999998

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.94  E-value=1e-08  Score=75.14  Aligned_cols=100  Identities=18%  Similarity=0.246  Sum_probs=77.3

Q ss_pred             hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757           5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT   83 (139)
Q Consensus         5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~   83 (139)
                      ++|+ ++..+.++..+++.+.  +.++..|||+|+|.|.+|..+.+...   +++++|+++.+++..++.+..       
T Consensus         7 ~~gQnFL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d~~~~~~L~~~~~~-------   74 (262)
T PF00398_consen    7 SLGQNFLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRGK---RVIAVEIDPDLAKHLKERFAS-------   74 (262)
T ss_dssp             GCTSSEEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHSS---EEEEEESSHHHHHHHHHHCTT-------
T ss_pred             CCCcCeeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhcccC---cceeecCcHhHHHHHHHHhhh-------
Confidence            4567 4457777888888886  56889999999999999999999984   999999999999999887754       


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCccc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAE  119 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~  119 (139)
                      .++++++.+|+.+ +.... . -...-..|++|.++
T Consensus        75 ~~~~~vi~~D~l~-~~~~~-~-~~~~~~~vv~NlPy  107 (262)
T PF00398_consen   75 NPNVEVINGDFLK-WDLYD-L-LKNQPLLVVGNLPY  107 (262)
T ss_dssp             CSSEEEEES-TTT-SCGGG-H-CSSSEEEEEEEETG
T ss_pred             cccceeeecchhc-cccHH-h-hcCCceEEEEEecc
Confidence            4789999999876 32110 0 02346788888874

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.93  E-value=6e-09  Score=79.32  Aligned_cols=104  Identities=16%  Similarity=0.209  Sum_probs=64.7

Q ss_pred             hccccc-ChHHHHHHHHHhcccCC-CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757           6 IGAAIG-GISAILTYLSIIQPHLN-ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL   82 (139)
Q Consensus         6 ~~~~~~-~~~~~~~~~~~l~~~~~-~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~   82 (139)
                      +++++. .+.....+.+.+.+.+. .+..+||+.||.|.++..++....   +|+|+|+++++++.|++++.. ++    
T Consensus       171 ~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i----  243 (352)
T PF05958_consen  171 PGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGI----  243 (352)
T ss_dssp             TTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT-----
T ss_pred             CCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCC----
Confidence            344443 33345555555544443 223899999999999999999987   999999999999999999998 65    


Q ss_pred             cCCcEEEEEccchhhhHHHh----------hhccCCceeEEecCcc
Q psy5757          83 TDGHIKFVALGMIKRIETVE----------LMMKFDRYDFLPHAPA  118 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~----------~~~~~~~~D~vi~~~~  118 (139)
                        .|++++.++..+....+.          .......+|+|+..|+
T Consensus       244 --~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP  287 (352)
T PF05958_consen  244 --DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP  287 (352)
T ss_dssp             ---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred             --CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence              899999887654211110          0011236899999997

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.92  E-value=8.4e-09  Score=77.06  Aligned_cols=108  Identities=18%  Similarity=0.229  Sum_probs=71.9

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHc------CCCceEEEEeCCHHHHHHHHHHHHh-h
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELM------NSTGQVIGIEHVPQLVNSSIQNILH-S   77 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~------~~~~~v~~~d~~~~~~~~a~~~~~~-~   77 (139)
                      ..|+.+++.+++..+.+++.  ..++.+|+|.+||+|.+...+.+..      ....+++|+|+++.++..|+.++.. +
T Consensus        24 ~~G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~  101 (311)
T PF02384_consen   24 KLGQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG  101 (311)
T ss_dssp             SCGGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred             ccceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence            45888999998999999885  5677899999999999999988753      1355999999999999999888754 3


Q ss_pred             ccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccc
Q psy5757          78 NARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus        78 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~  122 (139)
                      .    ...+..+..+|......    .....+||+|++||++.-.
T Consensus       102 ~----~~~~~~i~~~d~l~~~~----~~~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen  102 I----DNSNINIIQGDSLENDK----FIKNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             H----HCBGCEEEES-TTTSHS----CTST--EEEEEEE--CTCE
T ss_pred             c----ccccccccccccccccc----cccccccccccCCCCcccc
Confidence            2    12445678888653111    1024579999999997655

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.91  E-value=1.7e-08  Score=68.48  Aligned_cols=101  Identities=20%  Similarity=0.149  Sum_probs=76.5

Q ss_pred             ccccc-ChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCC
Q psy5757           7 GAAIG-GISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDG   85 (139)
Q Consensus         7 ~~~~~-~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~   85 (139)
                      |+..+ +.....+|...+.  ...+..|||+|.|||-++.++.++.-+...++++|.|++......+..          +
T Consensus        27 GaI~PsSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~----------p   94 (194)
T COG3963          27 GAILPSSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY----------P   94 (194)
T ss_pred             eeecCCcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----------C
Confidence            55444 4444666777776  477889999999999999999999866779999999999998887764          5


Q ss_pred             cEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          86 HIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        86 ~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      .++++.+|+.+ +.....+.+...||.|||..++-
T Consensus        95 ~~~ii~gda~~-l~~~l~e~~gq~~D~viS~lPll  128 (194)
T COG3963          95 GVNIINGDAFD-LRTTLGEHKGQFFDSVISGLPLL  128 (194)
T ss_pred             Cccccccchhh-HHHHHhhcCCCeeeeEEeccccc
Confidence            56688999776 44222233556799999988743

>KOG1499|consensus

Probab=98.90  E-value=7.9e-09  Score=77.34  Aligned_cols=99  Identities=14%  Similarity=0.211  Sum_probs=74.1

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      ++.+++.|||+|||+|.++...++.+..  +|+++|.+ ++.+.|.+.... ++     ...++++.+.+.+ +     .
T Consensus        57 ~lf~dK~VlDVGcGtGILS~F~akAGA~--~V~aVe~S-~ia~~a~~iv~~N~~-----~~ii~vi~gkvEd-i-----~  122 (346)
T KOG1499|consen   57 HLFKDKTVLDVGCGTGILSMFAAKAGAR--KVYAVEAS-SIADFARKIVKDNGL-----EDVITVIKGKVED-I-----E  122 (346)
T ss_pred             hhcCCCEEEEcCCCccHHHHHHHHhCcc--eEEEEech-HHHHHHHHHHHhcCc-----cceEEEeecceEE-E-----e
Confidence            4578899999999999999999999954  99999999 566889888887 54     3558999998655 2     2


Q ss_pred             ccCCceeEEecCccccc------cccceeeeeeeccCCCC
Q psy5757         105 MKFDRYDFLPHAPAESW------MNIPVCINYTATMPEGS  138 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~------~~~p~~~~~~~~~p~g~  138 (139)
                      .|.+++|+++|-+--+|      +...+-..=.+++|+|.
T Consensus       123 LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~  162 (346)
T KOG1499|consen  123 LPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGL  162 (346)
T ss_pred             cCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCce
Confidence            34688999999876443      23334444455666664

>KOG1271|consensus

Probab=98.85  E-value=1.7e-08  Score=69.52  Aligned_cols=91  Identities=14%  Similarity=0.254  Sum_probs=66.3

Q ss_pred             HHHHHHHHhcccC-----C-CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcE
Q psy5757          15 AILTYLSIIQPHL-----N-ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHI   87 (139)
Q Consensus        15 ~~~~~~~~l~~~~-----~-~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i   87 (139)
                      ...++++++.++.     . ...+|||+|||+|.+...|++..- ...++|+|.|+.+++.|+..+.+ +.     ...+
T Consensus        47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~-----~n~I  120 (227)
T KOG1271|consen   47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGF-----SNEI  120 (227)
T ss_pred             HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCC-----Ccce
Confidence            3456666665432     2 233999999999999999999874 44799999999999999999888 65     3349


Q ss_pred             EEEEccchhhhHHHhhhccCCceeEEecCc
Q psy5757          88 KFVALGMIKRIETVELMMKFDRYDFLPHAP  117 (139)
Q Consensus        88 ~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~  117 (139)
                      +|.+.|+.+. .     ...++||+|.--.
T Consensus       121 ~f~q~DI~~~-~-----~~~~qfdlvlDKG  144 (227)
T KOG1271|consen  121 RFQQLDITDP-D-----FLSGQFDLVLDKG  144 (227)
T ss_pred             eEEEeeccCC-c-----ccccceeEEeecC
Confidence            9999997762 1     1235577774433

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.85  E-value=4.4e-08  Score=68.88  Aligned_cols=82  Identities=18%  Similarity=0.257  Sum_probs=63.5

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      ...+||||||.|.+...+|... |+..++|+|+....+..+.+++.. ++      .|+.++++|+...+..+   .+.+
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l------~Nv~~~~~da~~~l~~~---~~~~   87 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGL------KNVRFLRGDARELLRRL---FPPG   87 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTT------SSEEEEES-CTTHHHHH---STTT
T ss_pred             CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcc------cceEEEEccHHHHHhhc---ccCC
Confidence            3478999999999999999998 578999999999999999999888 65      89999999988755543   2346


Q ss_pred             ceeEEecCccccc
Q psy5757         109 RYDFLPHAPAESW  121 (139)
Q Consensus       109 ~~D~vi~~~~~~~  121 (139)
                      ++|-|+.+.+=-|
T Consensus        88 ~v~~i~i~FPDPW  100 (195)
T PF02390_consen   88 SVDRIYINFPDPW  100 (195)
T ss_dssp             SEEEEEEES----
T ss_pred             chheEEEeCCCCC
Confidence            7899988876333

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.79  E-value=2.5e-09  Score=76.02  Aligned_cols=110  Identities=11%  Similarity=0.211  Sum_probs=72.8

Q ss_pred             ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEE
Q psy5757          10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKF   89 (139)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~   89 (139)
                      ++-|.....++....  ..+-.++||+|||||-.+..+..+..   +++|+|+|++|++.|.++=.+        +.  .
T Consensus       108 Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~Y--------D~--L  172 (287)
T COG4976         108 YSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLY--------DT--L  172 (287)
T ss_pred             CccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccch--------HH--H
Confidence            344555555555554  23367999999999999999999886   899999999999999876433        11  1


Q ss_pred             EEccchhhhHHHhhhccCCceeEEecCccccccccceeee---eeeccCCCC
Q psy5757          90 VALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCIN---YTATMPEGS  138 (139)
Q Consensus        90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g~  138 (139)
                      .+.+... +.   .....+++|+|.+.-++.++-+..++.   ...+.|+|.
T Consensus       173 ~~Aea~~-Fl---~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGl  220 (287)
T COG4976         173 YVAEAVL-FL---EDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGL  220 (287)
T ss_pred             HHHHHHH-Hh---hhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCce
Confidence            2233221 11   112356799999988887776554333   444555553

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.78  E-value=3.9e-09  Score=75.22  Aligned_cols=102  Identities=19%  Similarity=0.179  Sum_probs=78.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .+.+.+|||.+.|.|+++...+++...  +|+.+|.+|..++.|+-|... ++    ...+++++.+|..+.+++    .
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~l----~~~~i~iilGD~~e~V~~----~  201 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSREL----FEIAIKIILGDAYEVVKD----F  201 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCccc----cccccEEecccHHHHHhc----C
Confidence            357899999999999999999998864  999999999999999888766 43    234789999997665543    4


Q ss_pred             cCCceeEEecCcc-cccccc-----ceeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPA-ESWMNI-----PVCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~-~~~~~~-----p~~~~~~~~~p~g~  138 (139)
                      ++.+||+|++.|+ |.....     .....|+.++|+|.
T Consensus       202 ~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGr  240 (287)
T COG2521         202 DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGR  240 (287)
T ss_pred             CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCc
Confidence            5678999999998 333222     23445677777775

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.77  E-value=8.2e-08  Score=67.66  Aligned_cols=84  Identities=15%  Similarity=0.148  Sum_probs=59.5

Q ss_pred             HhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHH
Q psy5757          22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIET  100 (139)
Q Consensus        22 ~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~  100 (139)
                      ++...++++..|+|..||-|.++..+++..+ ...|+++|++|.+++.+++++.. ++     ..++..+.+|..+.+. 
T Consensus        94 Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv-----~~~i~~~~~D~~~~~~-  166 (200)
T PF02475_consen   94 RIANLVKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKV-----ENRIEVINGDAREFLP-  166 (200)
T ss_dssp             HHHTC--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT------TTTEEEEES-GGG----
T ss_pred             HHHhcCCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCC-----CCeEEEEcCCHHHhcC-
Confidence            4444578899999999999999999999543 34899999999999999999998 55     4678999999765222 


Q ss_pred             HhhhccCCceeEEecCcc
Q psy5757         101 VELMMKFDRYDFLPHAPA  118 (139)
Q Consensus       101 ~~~~~~~~~~D~vi~~~~  118 (139)
                            ...+|.|+++.+
T Consensus       167 ------~~~~drvim~lp  178 (200)
T PF02475_consen  167 ------EGKFDRVIMNLP  178 (200)
T ss_dssp             ------TT-EEEEEE--T
T ss_pred             ------ccccCEEEECCh
Confidence                  467999999987

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG1500|consensus

Probab=98.74  E-value=3.6e-08  Score=73.83  Aligned_cols=77  Identities=21%  Similarity=0.361  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ..++.|||+|||+|.++...+.....  +|+++|.| +|.+.|++..+.++   + .++++++.|.+.+    +.++   
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS-~MAqyA~~Lv~~N~---~-~~rItVI~GKiEd----ieLP---  241 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEAS-EMAQYARKLVASNN---L-ADRITVIPGKIED----IELP---  241 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhCcc--eEEEEehh-HHHHHHHHHHhcCC---c-cceEEEccCcccc----ccCc---
Confidence            56789999999999999999998864  99999999 79999999888732   2 4889999998544    3233   


Q ss_pred             CceeEEecCcc
Q psy5757         108 DRYDFLPHAPA  118 (139)
Q Consensus       108 ~~~D~vi~~~~  118 (139)
                      +++|++|+-|-
T Consensus       242 Ek~DviISEPM  252 (517)
T KOG1500|consen  242 EKVDVIISEPM  252 (517)
T ss_pred             hhccEEEeccc
Confidence            67999999886

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.73  E-value=3.5e-08  Score=70.71  Aligned_cols=105  Identities=15%  Similarity=0.080  Sum_probs=72.2

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-h------ccccccCCcEEEEEccchhhhHH
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-S------NARLLTDGHIKFVALGMIKRIET  100 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~------~~~~~~~~~i~~~~~d~~~~~~~  100 (139)
                      .++.+||..|||.|.....|++..-   +|+|+|+|+.+++.+.+.... .      -.......++++.++|+.+ +..
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~-l~~  117 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN-LPK  117 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC-CCc
Confidence            4568999999999999999999885   899999999999998663211 0      0000113578999999776 220


Q ss_pred             HhhhccCCceeEEecCccccccccceeee-----eeeccCCCC
Q psy5757         101 VELMMKFDRYDFLPHAPAESWMNIPVCIN-----YTATMPEGS  138 (139)
Q Consensus       101 ~~~~~~~~~~D~vi~~~~~~~~~~p~~~~-----~~~~~p~g~  138 (139)
                        .....++||+|+-..+|+-++...+..     ...+.|+|.
T Consensus       118 --~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~  158 (226)
T PRK13256        118 --IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQ  158 (226)
T ss_pred             --cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcE
Confidence              011235799999988888876554433     344555553

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.71  E-value=3.4e-07  Score=68.31  Aligned_cols=106  Identities=13%  Similarity=0.189  Sum_probs=77.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+++.+.  ..++..++|..+|.|+.+..+++..+ .++|+|+|.++.+++.+++++...      ..+++++++++.
T Consensus         9 l~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~~nF~   79 (305)
T TIGR00006         9 LDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF------EGRVVLIHDNFA   79 (305)
T ss_pred             HHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEeCCHH
Confidence            455666664  46778999999999999999999885 489999999999999999987651      258999999977


Q ss_pred             hhhHHHhhhccCCceeEEecCcc--ccccccc-eeeeee
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPA--ESWMNIP-VCINYT  131 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~--~~~~~~p-~~~~~~  131 (139)
                      + +..........++|.|+.+.-  .+.+.+| .++.|+
T Consensus        80 ~-l~~~l~~~~~~~vDgIl~DLGvSS~Qld~~~RGFSf~  117 (305)
T TIGR00006        80 N-FFEHLDELLVTKIDGILVDLGVSSPQLDDPERGFSFK  117 (305)
T ss_pred             H-HHHHHHhcCCCcccEEEEeccCCHhhcCCCCCCCccC
Confidence            6 332222223457999988764  3333333 344443

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG2187|consensus

Probab=98.70  E-value=3.7e-08  Score=76.99  Aligned_cols=82  Identities=17%  Similarity=0.221  Sum_probs=66.2

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +..++.++|+.||||..+..+++...   +|+|+|+++.++..|+++++. +.      .|.+|+++...+.++.+..+ 
T Consensus       381 l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~Ngi------sNa~Fi~gqaE~~~~sl~~~-  450 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQINGI------SNATFIVGQAEDLFPSLLTP-  450 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcCc------cceeeeecchhhccchhccc-
Confidence            57788999999999999999999997   899999999999999999998 66      89999999777655543222 


Q ss_pred             cCCcee-EEecCcc
Q psy5757         106 KFDRYD-FLPHAPA  118 (139)
Q Consensus       106 ~~~~~D-~vi~~~~  118 (139)
                      ..++=+ +++.+|+
T Consensus       451 ~~~~~~~v~iiDPp  464 (534)
T KOG2187|consen  451 CCDSETLVAIIDPP  464 (534)
T ss_pred             CCCCCceEEEECCC
Confidence            222334 6677766

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.67  E-value=3.2e-08  Score=71.40  Aligned_cols=88  Identities=14%  Similarity=0.207  Sum_probs=65.6

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +.+..+|+|+|+|+|.++..++++. |..+++.+|. |+.++.+++   .        ++++++.+|+.+.       .+
T Consensus        98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~--------~rv~~~~gd~f~~-------~P  157 (241)
T PF00891_consen   98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---A--------DRVEFVPGDFFDP-------LP  157 (241)
T ss_dssp             TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---T--------TTEEEEES-TTTC-------CS
T ss_pred             ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---c--------cccccccccHHhh-------hc
Confidence            3456789999999999999999999 5889999999 678888877   3        7899999997542       22


Q ss_pred             CCceeEEecCcccccccccee-----eeeeeccCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVC-----INYTATMPE  136 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~-----~~~~~~~p~  136 (139)
                      .  +|+++...++|...+..+     ..+.+..|+
T Consensus       158 ~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg  190 (241)
T PF00891_consen  158 V--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPG  190 (241)
T ss_dssp             S--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred             c--ccceeeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence            3  999999999998887643     225555544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.66  E-value=2.9e-07  Score=75.90  Aligned_cols=96  Identities=14%  Similarity=0.114  Sum_probs=69.5

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcC-----------------------------------------CC
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMN-----------------------------------------ST   54 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~-----------------------------------------~~   54 (139)
                      ...++. +..+.+++..++|.+||+|.+....+....                                         ..
T Consensus       178 Aaa~l~-~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~  256 (702)
T PRK11783        178 AAAILL-RSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP  256 (702)
T ss_pred             HHHHHH-HcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence            344443 333335678999999999999988876310                                         12


Q ss_pred             ceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757          55 GQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        55 ~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      .+++|+|+++.+++.|++|+.. ++     ...+++.++|+.+ +.   .....+++|+|++||++..
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~~g~-----~~~i~~~~~D~~~-~~---~~~~~~~~d~IvtNPPYg~  315 (702)
T PRK11783        257 SKFYGSDIDPRVIQAARKNARRAGV-----AELITFEVKDVAD-LK---NPLPKGPTGLVISNPPYGE  315 (702)
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEeCChhh-cc---cccccCCCCEEEECCCCcC
Confidence            3799999999999999999998 65     3568999999655 21   1222346999999999654

>KOG2899|consensus

Probab=98.66  E-value=2.3e-08  Score=71.60  Aligned_cols=49  Identities=27%  Similarity=0.478  Sum_probs=43.7

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      ...+..+|||||.+|.++..+++.+.+. .++|+||++..+..|++++..
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhccc-eeeEeeccHHHHHHHHHhccc
Confidence            3566799999999999999999999754 799999999999999998754

>PLN02823 spermine synthase

Probab=98.65  E-value=2.2e-07  Score=70.34  Aligned_cols=83  Identities=11%  Similarity=0.203  Sum_probs=64.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      +..++||.+|+|.|..+..+.+... ..+++.+|+++.+++.|++.+.... ..+..++++++.+|+.+.+++     ..
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~-~~~~dprv~v~~~Da~~~L~~-----~~  174 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNR-EAFCDKRLELIINDARAELEK-----RD  174 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhccccc-ccccCCceEEEEChhHHHHhh-----CC
Confidence            4567999999999999999988653 3489999999999999999875410 003358999999998775542     24


Q ss_pred             CceeEEecCc
Q psy5757         108 DRYDFLPHAP  117 (139)
Q Consensus       108 ~~~D~vi~~~  117 (139)
                      ++||+|+...
T Consensus       175 ~~yDvIi~D~  184 (336)
T PLN02823        175 EKFDVIIGDL  184 (336)
T ss_pred             CCccEEEecC
Confidence            6799999985

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.64  E-value=1.3e-07  Score=67.56  Aligned_cols=109  Identities=14%  Similarity=0.197  Sum_probs=70.2

Q ss_pred             hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh--hc-c---
Q psy5757           6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH--SN-A---   79 (139)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~-~---   79 (139)
                      +...-.+|..+...-. +.  .+++.+||..|||.|.....|+++.-   +|+|+|+|+.+++.+.+....  .. .   
T Consensus        17 w~~~~~~p~L~~~~~~-l~--~~~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~   90 (218)
T PF05724_consen   17 WDQGEPNPALVEYLDS-LA--LKPGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGG   90 (218)
T ss_dssp             T--TTSTHHHHHHHHH-HT--TSTSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTT
T ss_pred             CCCCCCCHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccc
Confidence            3344445554444333 32  46777999999999999999999874   999999999999998443221  10 0   


Q ss_pred             -ccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccc
Q psy5757          80 -RLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIP  125 (139)
Q Consensus        80 -~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p  125 (139)
                       ......++++.++|+.+ +.    ....++||+|+-..+++=++..
T Consensus        91 ~~~~~~~~i~~~~gDfF~-l~----~~~~g~fD~iyDr~~l~Alpp~  132 (218)
T PF05724_consen   91 FKRYQAGRITIYCGDFFE-LP----PEDVGKFDLIYDRTFLCALPPE  132 (218)
T ss_dssp             EEEETTSSEEEEES-TTT-GG----GSCHHSEEEEEECSSTTTS-GG
T ss_pred             eeeecCCceEEEEccccc-CC----hhhcCCceEEEEecccccCCHH
Confidence             00123578999999876 22    1122479999988887766543

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.64  E-value=1.7e-07  Score=73.41  Aligned_cols=77  Identities=18%  Similarity=0.267  Sum_probs=54.8

Q ss_pred             CCeEEEEcccCChhHHHHHHHc---CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          30 NSKVLEIGSGSGYLTNMISELM---NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~---~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +..|+|+|||+|.++...++..   ....+|+++|.++.+...+++..+. ++     .++|+++++|+.+ ++   .  
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----~~~V~vi~~d~r~-v~---l--  255 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----GDKVTVIHGDMRE-VE---L--  255 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----TTTEEEEES-TTT-SC---H--
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----CCeEEEEeCcccC-CC---C--
Confidence            4689999999999988777664   2234999999999988888777555 54     4789999999776 32   1  


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                       .+++|+|||=.-
T Consensus       256 -pekvDIIVSElL  267 (448)
T PF05185_consen  256 -PEKVDIIVSELL  267 (448)
T ss_dssp             -SS-EEEEEE---
T ss_pred             -CCceeEEEEecc
Confidence             358999988665

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG2730|consensus

Probab=98.63  E-value=1.9e-07  Score=66.14  Aligned_cols=91  Identities=14%  Similarity=0.092  Sum_probs=71.6

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      ..+...... ......|+|..||.|+.+...+....   .|+++|+||.-+..|+.+++- +.     .++++|++||++
T Consensus        83 ~~iA~~v~~-~~~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI-----~~rItFI~GD~l  153 (263)
T KOG2730|consen   83 EHIANRVVA-CMNAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGV-----PDRITFICGDFL  153 (263)
T ss_pred             HHHHHHHHH-hcCcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecC-----CceeEEEechHH
Confidence            344444432 22557899999999999999999885   899999999999999999998 87     569999999988


Q ss_pred             hhhHHHhhhccCCceeEEecCcc
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      +.+..+.+.  -+.+|+|+..++
T Consensus       154 d~~~~lq~~--K~~~~~vf~spp  174 (263)
T KOG2730|consen  154 DLASKLKAD--KIKYDCVFLSPP  174 (263)
T ss_pred             HHHHHHhhh--hheeeeeecCCC
Confidence            866544332  234899988886

>KOG2940|consensus

Probab=98.63  E-value=3e-08  Score=70.72  Aligned_cols=97  Identities=14%  Similarity=0.152  Sum_probs=71.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      +....++||||+.|+....+....-.  +++..|.|..|++.++.--...       -.+...++|    =+.++  ...
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~-------i~~~~~v~D----EE~Ld--f~e  135 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPS-------IETSYFVGD----EEFLD--FKE  135 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCc-------eEEEEEecc----hhccc--ccc
Confidence            45678999999999999988877632  8999999999999887753221       234556666    23332  235


Q ss_pred             CceeEEecCccccccccceeee---eeeccCCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPVCIN---YTATMPEGSY  139 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g~~  139 (139)
                      .++|++++..++||.++..+-.   -..++|||.|
T Consensus       136 ns~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~F  170 (325)
T KOG2940|consen  136 NSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLF  170 (325)
T ss_pred             cchhhhhhhhhhhhhccCchHHHHHHHhcCCCccc
Confidence            6899999999999999865443   4578888864

>PRK04148 hypothetical protein; Provisional

Probab=98.62  E-value=3.4e-07  Score=60.41  Aligned_cols=72  Identities=14%  Similarity=0.184  Sum_probs=50.4

Q ss_pred             CCCCeEEEEcccCCh-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGY-LTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~-~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++++++|+|||+|. .+..|++...   .|+++|+++..++.++++            .++++.+|.++.-..+     
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~-----   74 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEI-----   74 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHH-----
Confidence            345799999999996 8888887653   999999999988877664            2456777765421111     


Q ss_pred             CCceeEEecCccc
Q psy5757         107 FDRYDFLPHAPAE  119 (139)
Q Consensus       107 ~~~~D~vi~~~~~  119 (139)
                      ...+|+|.+-.+-
T Consensus        75 y~~a~liysirpp   87 (134)
T PRK04148         75 YKNAKLIYSIRPP   87 (134)
T ss_pred             HhcCCEEEEeCCC
Confidence            2346777665553

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=1.2e-07  Score=66.62  Aligned_cols=98  Identities=12%  Similarity=0.213  Sum_probs=70.8

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--hhHHHhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--RIETVEL  103 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~  103 (139)
                      .+++++.|+|+|+-.|+++..+++..++.+.|+++|+.|         ...       -+++.++++|+++  ...++..
T Consensus        42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p---------~~~-------~~~V~~iq~d~~~~~~~~~l~~  105 (205)
T COG0293          42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------MKP-------IPGVIFLQGDITDEDTLEKLLE  105 (205)
T ss_pred             eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc---------ccc-------CCCceEEeeeccCccHHHHHHH
Confidence            357889999999999999999999998777899999997         211       2679999999885  3344544


Q ss_pred             hccCCceeEEecCcc----cccccc----------ceeeeeeeccCCCCC
Q psy5757         104 MMKFDRYDFLPHAPA----ESWMNI----------PVCINYTATMPEGSY  139 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~----~~~~~~----------p~~~~~~~~~p~g~~  139 (139)
                      ......+|+|+|...    .+|..|          ...+....++|+|+|
T Consensus       106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~f  155 (205)
T COG0293         106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSF  155 (205)
T ss_pred             HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeE
Confidence            445556899998776    233222          233445667777764

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.60  E-value=3e-07  Score=70.74  Aligned_cols=76  Identities=16%  Similarity=0.056  Sum_probs=62.0

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      +.+|||++||+|..+..++...+ ..+|+++|+++.+++.++++++. ++      .++++..+|+.+.+..      .+
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~Da~~~l~~------~~  124 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKDANALLHE------ER  124 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhhHHHHHhh------cC
Confidence            46899999999999999998764 34899999999999999999988 44      6677888996543221      34


Q ss_pred             ceeEEecCcc
Q psy5757         109 RYDFLPHAPA  118 (139)
Q Consensus       109 ~~D~vi~~~~  118 (139)
                      +||+|+.+|.
T Consensus       125 ~fD~V~lDP~  134 (382)
T PRK04338        125 KFDVVDIDPF  134 (382)
T ss_pred             CCCEEEECCC
Confidence            6999999984

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.55  E-value=5.2e-07  Score=64.76  Aligned_cols=78  Identities=17%  Similarity=0.167  Sum_probs=65.1

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      ..+||||||.|.+...+|... |+..++|+|+....+..|.+.+.. ++      .|+.+++.|+.+.+..+.   +.++
T Consensus        50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~---~~~s  119 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLI---PDGS  119 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcC---CCCC
Confidence            578999999999999999998 577999999999999999998888 54      699999999887555431   2347


Q ss_pred             eeEEecCcc
Q psy5757         110 YDFLPHAPA  118 (139)
Q Consensus       110 ~D~vi~~~~  118 (139)
                      +|-|+.+.+
T Consensus       120 l~~I~i~FP  128 (227)
T COG0220         120 LDKIYINFP  128 (227)
T ss_pred             eeEEEEECC
Confidence            888877776

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.51  E-value=6.7e-07  Score=67.37  Aligned_cols=90  Identities=13%  Similarity=0.148  Sum_probs=69.5

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEc-c
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVAL-G   93 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~-d   93 (139)
                      .++..-.+. ++++|..+||--||||+........+.   +++|.|++..|++-|+.|+.. +.      +...+... |
T Consensus       185 lAR~mVNLa-~v~~G~~vlDPFcGTGgiLiEagl~G~---~viG~Did~~mv~gak~Nl~~y~i------~~~~~~~~~D  254 (347)
T COG1041         185 LARAMVNLA-RVKRGELVLDPFCGTGGILIEAGLMGA---RVIGSDIDERMVRGAKINLEYYGI------EDYPVLKVLD  254 (347)
T ss_pred             HHHHHHHHh-ccccCCEeecCcCCccHHHHhhhhcCc---eEeecchHHHHHhhhhhhhhhhCc------CceeEEEecc
Confidence            444444454 489999999999999999999888765   999999999999999999998 54      55655554 7


Q ss_pred             chhhhHHHhhhccCCceeEEecCccccc
Q psy5757          94 MIKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        94 ~~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      +.+ ++   +  +..++|.|+..|+...
T Consensus       255 a~~-lp---l--~~~~vdaIatDPPYGr  276 (347)
T COG1041         255 ATN-LP---L--RDNSVDAIATDPPYGR  276 (347)
T ss_pred             ccc-CC---C--CCCccceEEecCCCCc
Confidence            655 22   2  2346999999998554

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.51  E-value=6.7e-07  Score=67.54  Aligned_cols=80  Identities=18%  Similarity=0.159  Sum_probs=67.3

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      ...+|..|+|.-||-|.++..++....+  .|+++|++|.+++.++++++. +.     ...+..+++|..+...+    
T Consensus       185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v-----~~~v~~i~gD~rev~~~----  253 (341)
T COG2520         185 LVKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKV-----EGRVEPILGDAREVAPE----  253 (341)
T ss_pred             hhcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCc-----cceeeEEeccHHHhhhc----
Confidence            4577999999999999999999999865  599999999999999999998 54     34489999997763332    


Q ss_pred             ccCCceeEEecCcc
Q psy5757         105 MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 ~~~~~~D~vi~~~~  118 (139)
                        ...+|-|+++.+
T Consensus       254 --~~~aDrIim~~p  265 (341)
T COG2520         254 --LGVADRIIMGLP  265 (341)
T ss_pred             --cccCCEEEeCCC
Confidence              266999999987

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.50  E-value=5.1e-07  Score=71.85  Aligned_cols=99  Identities=15%  Similarity=0.090  Sum_probs=73.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .+..+||||||.|.+...+|... |+..++|+|+....+..+.+.... ++      .|+.++..|+.. +.   ...+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~-~~---~~~~~  415 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDL-IL---NDLPN  415 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHH-HH---HhcCc
Confidence            45688999999999999999998 577999999999999988888776 54      789888888543 22   22345


Q ss_pred             CceeEEecCccccccccc-----------eeeeeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIP-----------VCINYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p-----------~~~~~~~~~p~g~  138 (139)
                      .++|.|+.+.+=-|-..-           .......++|+|.
T Consensus       416 ~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~  457 (506)
T PRK01544        416 NSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGN  457 (506)
T ss_pred             ccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCE
Confidence            679999888875553321           2334566677764

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.50  E-value=1.2e-06  Score=66.33  Aligned_cols=92  Identities=13%  Similarity=0.123  Sum_probs=58.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccc---c-cCCcEEEEEccchhhhHHHhh
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARL---L-TDGHIKFVALGMIKRIETVEL  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~---~-~~~~i~~~~~d~~~~~~~~~~  103 (139)
                      ++.+|||+|||.|+...-.....-  .+++|+|++...++.|+++... ..+..   . ......++.+|...  ..+..
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~--~~l~~  137 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS--ESLRE  137 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC--SHHHC
T ss_pred             CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc--chhhh
Confidence            778999999999887776666532  2999999999999999999833 11000   0 01356778887653  12222


Q ss_pred             hccC--CceeEEecCcccccccc
Q psy5757         104 MMKF--DRYDFLPHAPAESWMNI  124 (139)
Q Consensus       104 ~~~~--~~~D~vi~~~~~~~~~~  124 (139)
                      ....  .+||+|-+..++|++-.
T Consensus       138 ~~~~~~~~FDvVScQFalHY~Fe  160 (331)
T PF03291_consen  138 KLPPRSRKFDVVSCQFALHYAFE  160 (331)
T ss_dssp             TSSSTTS-EEEEEEES-GGGGGS
T ss_pred             hccccCCCcceeehHHHHHHhcC
Confidence            2233  48999999999998664

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.48  E-value=1.6e-06  Score=66.11  Aligned_cols=82  Identities=13%  Similarity=0.214  Sum_probs=66.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCC-------------------------------Cc-------eEEEEeCCHHHHHH
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNS-------------------------------TG-------QVIGIEHVPQLVNS   69 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~-------------------------------~~-------~v~~~d~~~~~~~~   69 (139)
                      +++..++|.-||+|.+....+.....                               .+       .++|.|+++.+++.
T Consensus       190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~  269 (381)
T COG0116         190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG  269 (381)
T ss_pred             CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence            55579999999999999998887631                               11       37799999999999


Q ss_pred             HHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          70 SIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        70 a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      |+.|+.. +.     .+.++|.++|+.+ ++     .+.+.+|++||||+..
T Consensus       270 Ak~NA~~AGv-----~d~I~f~~~d~~~-l~-----~~~~~~gvvI~NPPYG  310 (381)
T COG0116         270 AKANARAAGV-----GDLIEFKQADATD-LK-----EPLEEYGVVISNPPYG  310 (381)
T ss_pred             HHHHHHhcCC-----CceEEEEEcchhh-CC-----CCCCcCCEEEeCCCcc
Confidence            9999999 87     6789999999665 22     1236799999999955

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.47  E-value=1.2e-06  Score=62.12  Aligned_cols=61  Identities=18%  Similarity=0.281  Sum_probs=50.1

Q ss_pred             EEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhH
Q psy5757          33 VLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIE   99 (139)
Q Consensus        33 iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~   99 (139)
                      |+||||..|+++.+|+++.. -.++++.|+++..++.|++++.. ++     .++++++.+|.++.+.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l-----~~~i~~rlgdGL~~l~   62 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGL-----EDRIEVRLGDGLEVLK   62 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT------TTTEEEEE-SGGGG--
T ss_pred             CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-----cccEEEEECCcccccC
Confidence            68999999999999999884 34899999999999999999998 76     5789999999766443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.46  E-value=1.2e-06  Score=63.06  Aligned_cols=40  Identities=23%  Similarity=0.286  Sum_probs=34.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHH
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNS   69 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~   69 (139)
                      .+++.+||+|||+|.++..+++...  .+++++|+++.++..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHH
Confidence            4678999999999999999999842  389999999977765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK10742 putative methyltransferase; Provisional

Probab=98.46  E-value=2.8e-06  Score=61.51  Aligned_cols=87  Identities=9%  Similarity=0.104  Sum_probs=67.6

Q ss_pred             CCCCC--eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccC---CcEEEEEccchhhhHH
Q psy5757          27 LNENS--KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTD---GHIKFVALGMIKRIET  100 (139)
Q Consensus        27 ~~~~~--~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~---~~i~~~~~d~~~~~~~  100 (139)
                      ++++.  +|||+.+|+|..+..++.+..   +|+++|-++......++++++ .....+..   .+++++++|..+.+.+
T Consensus        84 lk~g~~p~VLD~TAGlG~Da~~las~G~---~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~  160 (250)
T PRK10742         84 IKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD  160 (250)
T ss_pred             CCCCCCCEEEECCCCccHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh
Confidence            46666  899999999999999999864   799999999999999988877 21111111   5789999998775543


Q ss_pred             HhhhccCCceeEEecCccccc
Q psy5757         101 VELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus       101 ~~~~~~~~~~D~vi~~~~~~~  121 (139)
                           ..++||+|+..|.|.+
T Consensus       161 -----~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        161 -----ITPRPQVVYLDPMFPH  176 (250)
T ss_pred             -----CCCCCcEEEECCCCCC
Confidence                 1236999999998765

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.44  E-value=3.3e-06  Score=66.62  Aligned_cols=81  Identities=19%  Similarity=0.228  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .+++.+|||++||.|+-+..++..++.++.+++.|+++..++.+++++.+ +.      .|+.+...|... +..   . 
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------~nv~v~~~D~~~-~~~---~-  179 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------SNVALTHFDGRV-FGA---A-  179 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCchhh-hhh---h-
Confidence            47889999999999999999999997778999999999999999999999 65      788888888654 211   1 


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ....||.|+...+
T Consensus       180 ~~~~fD~ILvDaP  192 (470)
T PRK11933        180 LPETFDAILLDAP  192 (470)
T ss_pred             chhhcCeEEEcCC
Confidence            1246999986665

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.44  E-value=8.1e-06  Score=56.89  Aligned_cols=88  Identities=19%  Similarity=0.198  Sum_probs=65.4

Q ss_pred             HHHHHHhc--ccCCCCC-eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEc
Q psy5757          17 LTYLSIIQ--PHLNENS-KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVAL   92 (139)
Q Consensus        17 ~~~~~~l~--~~~~~~~-~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~   92 (139)
                      ..+.+-+.  +.+.... +++|+|+|.|..+..++-.. |+.+++-+|.+..-+...+..... ++      +|++++++
T Consensus        33 ~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~  105 (184)
T PF02527_consen   33 RHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVING  105 (184)
T ss_dssp             HHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES
T ss_pred             HHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEe
Confidence            34555553  2334434 89999999999999999988 577999999999999998888887 55      89999999


Q ss_pred             cchhhhHHHhhhccCCceeEEecCcc
Q psy5757          93 GMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        93 d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      .+.+       .....+||+|++..+
T Consensus       106 R~E~-------~~~~~~fd~v~aRAv  124 (184)
T PF02527_consen  106 RAEE-------PEYRESFDVVTARAV  124 (184)
T ss_dssp             -HHH-------TTTTT-EEEEEEESS
T ss_pred             eecc-------cccCCCccEEEeehh
Confidence            8443       123567999999887

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.43  E-value=1.8e-07  Score=63.69  Aligned_cols=72  Identities=8%  Similarity=0.045  Sum_probs=54.1

Q ss_pred             EEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccccccee---eeeeec
Q psy5757          58 IGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVC---INYTAT  133 (139)
Q Consensus        58 ~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~---~~~~~~  133 (139)
                      +|+|+|++|++.|+++... ..   -...+++++++|+.+    +  +.+.++||+|++..++|++.++..   ..++.+
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~---~~~~~i~~~~~d~~~----l--p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvL   71 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKAR---SCYKCIEWIEGDAID----L--PFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVL   71 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccc---cCCCceEEEEechhh----C--CCCCCCeeEEEecchhhcCCCHHHHHHHHHHHc
Confidence            4899999999999877653 11   002479999999544    2  234568999999999999988754   448889


Q ss_pred             cCCCC
Q psy5757         134 MPEGS  138 (139)
Q Consensus       134 ~p~g~  138 (139)
                      +|+|.
T Consensus        72 kpGG~   76 (160)
T PLN02232         72 KPGSR   76 (160)
T ss_pred             CcCeE
Confidence            99985

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.43  E-value=4.9e-07  Score=62.76  Aligned_cols=70  Identities=21%  Similarity=0.290  Sum_probs=57.8

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      ..+.|+|+|+|.++...+....   +|+++|.+|...+.|.+++.- +      ..|++++.+|+.++        .+..
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A~---rViAiE~dPk~a~~a~eN~~v~g------~~n~evv~gDA~~y--------~fe~   96 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAAE---RVIAIEKDPKRARLAEENLHVPG------DVNWEVVVGDARDY--------DFEN   96 (252)
T ss_pred             hceeeccCCcchHHHHHHhhhc---eEEEEecCcHHHHHhhhcCCCCC------CcceEEEecccccc--------cccc
Confidence            6789999999999999999875   999999999999999999865 4      48999999997762        2345


Q ss_pred             eeEEecCc
Q psy5757         110 YDFLPHAP  117 (139)
Q Consensus       110 ~D~vi~~~  117 (139)
                      .|+|+|-.
T Consensus        97 ADvvicEm  104 (252)
T COG4076          97 ADVVICEM  104 (252)
T ss_pred             cceeHHHH
Confidence            67776543

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.42  E-value=1.4e-06  Score=63.32  Aligned_cols=87  Identities=16%  Similarity=0.295  Sum_probs=62.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      ...++||||+|.|..+..++..+.   +|++.|.|+.|....+++            +.+++..  .+ +.+     ...
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~k------------g~~vl~~--~~-w~~-----~~~  150 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSKK------------GFTVLDI--DD-WQQ-----TDF  150 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHhC------------CCeEEeh--hh-hhc-----cCC
Confidence            456899999999999999999997   899999999987665442            2333322  22 331     245


Q ss_pred             ceeEEecCccccccccceee---eeeeccCCCC
Q psy5757         109 RYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       109 ~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      +||+|.|-+++-...+|...   .+..+.|.|.
T Consensus       151 ~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~  183 (265)
T PF05219_consen  151 KFDVISCLNVLDRCDRPLTLLRDIRRALKPNGR  183 (265)
T ss_pred             ceEEEeehhhhhccCCHHHHHHHHHHHhCCCCE
Confidence            79999999998888877533   3556666664

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG1975|consensus

Probab=98.41  E-value=4.8e-07  Score=67.40  Aligned_cols=108  Identities=19%  Similarity=0.122  Sum_probs=72.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhh-HHHhhhc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRI-ETVELMM  105 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~  105 (139)
                      +++..++++|||.|+..+..-+..-.  +++|+||.+..++.|+++... ..+.--....+.++.+|....- ..+ .+.
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~-~e~  192 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL-LEF  192 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh-ccC
Confidence            67788999999999877776665522  999999999999999999876 4321111134788999876522 211 111


Q ss_pred             cCCceeEEecCcccccccc-------ceeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNI-------PVCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~-------p~~~~~~~~~p~g~  138 (139)
                      +..+||+|-+..++|+.-.       .++.....++|+|.
T Consensus       193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~  232 (389)
T KOG1975|consen  193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGV  232 (389)
T ss_pred             CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcE
Confidence            2334999999999997543       12333455566654

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.37  E-value=2.3e-06  Score=59.00  Aligned_cols=88  Identities=18%  Similarity=0.259  Sum_probs=52.3

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ...+.+|||+|||+|..+..++... ...+|+..|.++ .++.++.++.. +.   ....++++...|--+...  ....
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~--~~~~  115 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELD--SDLL  115 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HH--HHHH
T ss_pred             hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCccc--cccc
Confidence            5678899999999999999999984 234999999998 99999999887 31   113567777776322111  1111


Q ss_pred             cCCceeEEecCccccc
Q psy5757         106 KFDRYDFLPHAPAESW  121 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~  121 (139)
                      ...+||+|+..-+++.
T Consensus       116 ~~~~~D~IlasDv~Y~  131 (173)
T PF10294_consen  116 EPHSFDVILASDVLYD  131 (173)
T ss_dssp             S-SSBSEEEEES--S-
T ss_pred             ccccCCEEEEecccch
Confidence            3457999988777553

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.36  E-value=3.3e-06  Score=64.86  Aligned_cols=76  Identities=14%  Similarity=0.149  Sum_probs=61.9

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      .+|||+.||+|..+..++.+.+.-.+|+++|+++.+++.+++|++. +.      .++++++.|+...+..     ...+
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~l~~-----~~~~  114 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANVLRY-----RNRK  114 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHHHHH-----hCCC
Confidence            5899999999999999999852123899999999999999999988 43      5788999997664432     1356


Q ss_pred             eeEEecCc
Q psy5757         110 YDFLPHAP  117 (139)
Q Consensus       110 ~D~vi~~~  117 (139)
                      ||+|...|
T Consensus       115 fDvIdlDP  122 (374)
T TIGR00308       115 FHVIDIDP  122 (374)
T ss_pred             CCEEEeCC
Confidence            99999998

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.35  E-value=3.9e-06  Score=62.11  Aligned_cols=80  Identities=14%  Similarity=0.246  Sum_probs=66.2

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      ++||-+|-|.|++++.+.+... ..+++.+|+++..++.+++.+.. ..-  ...++++++.+|+.+.+.+.     ..+
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~--~~dpRv~i~i~Dg~~~v~~~-----~~~  149 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGG--ADDPRVEIIIDDGVEFLRDC-----EEK  149 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccc--cCCCceEEEeccHHHHHHhC-----CCc
Confidence            6999999999999999999984 45999999999999999999987 320  11589999999988866531     237


Q ss_pred             eeEEecCcc
Q psy5757         110 YDFLPHAPA  118 (139)
Q Consensus       110 ~D~vi~~~~  118 (139)
                      ||+|+....
T Consensus       150 fDvIi~D~t  158 (282)
T COG0421         150 FDVIIVDST  158 (282)
T ss_pred             CCEEEEcCC
Confidence            999999885

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.35  E-value=4.8e-06  Score=59.00  Aligned_cols=98  Identities=14%  Similarity=0.205  Sum_probs=56.9

Q ss_pred             HHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc-cc--ccCCcEEEE
Q psy5757          15 AILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA-RL--LTDGHIKFV   90 (139)
Q Consensus        15 ~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~-~~--~~~~~i~~~   90 (139)
                      .+..+++.+.  +.++..++|+|||.|......+...+.+ +.+|+|+.+...+.|+..... ..+ .+  ....++++.
T Consensus        30 ~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~-~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~  106 (205)
T PF08123_consen   30 FVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCK-KSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELI  106 (205)
T ss_dssp             HHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--S-EEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEE
T ss_pred             HHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCc-EEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceee
Confidence            4556666654  6788899999999999988888777542 699999999998888765443 110 11  123578889


Q ss_pred             EccchhhhHHHhhhccCCceeEEecCcc
Q psy5757          91 ALGMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        91 ~~d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      .+|+.+.-. ...  .....|+|++|..
T Consensus       107 ~gdfl~~~~-~~~--~~s~AdvVf~Nn~  131 (205)
T PF08123_consen  107 HGDFLDPDF-VKD--IWSDADVVFVNNT  131 (205)
T ss_dssp             CS-TTTHHH-HHH--HGHC-SEEEE--T
T ss_pred             ccCccccHh-Hhh--hhcCCCEEEEecc
Confidence            999876211 100  1133699999875

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.35  E-value=4.6e-06  Score=60.65  Aligned_cols=83  Identities=18%  Similarity=0.238  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ++.++||-||.|.|.....+.+... ..+++.+|+++..++.|++.+.. ...  +..++++++.+|+...+.+     .
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~-----~  146 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKE-----T  146 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHT-----S
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHh-----c
Confidence            5678999999999999999988763 34999999999999999998876 321  3457999999998775552     2


Q ss_pred             CC-ceeEEecCcc
Q psy5757         107 FD-RYDFLPHAPA  118 (139)
Q Consensus       107 ~~-~~D~vi~~~~  118 (139)
                      .+ +||+|+....
T Consensus       147 ~~~~yDvIi~D~~  159 (246)
T PF01564_consen  147 QEEKYDVIIVDLT  159 (246)
T ss_dssp             SST-EEEEEEESS
T ss_pred             cCCcccEEEEeCC
Confidence            33 8999998765

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.34  E-value=1.6e-06  Score=61.41  Aligned_cols=79  Identities=20%  Similarity=0.253  Sum_probs=63.8

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .++.+.+++|+||..|++..++.+... -..+++.|+++..++.|.+++.. ++     .++++...+|.+..++     
T Consensus        13 ~V~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l-----~~~i~vr~~dgl~~l~-----   81 (226)
T COG2384          13 LVKQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNL-----SERIDVRLGDGLAVLE-----   81 (226)
T ss_pred             HHHcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCC-----cceEEEeccCCccccC-----
Confidence            446677799999999999999999885 44899999999999999999998 66     5889999999765443     


Q ss_pred             ccCCceeEEecC
Q psy5757         105 MKFDRYDFLPHA  116 (139)
Q Consensus       105 ~~~~~~D~vi~~  116 (139)
                       ..+.+|+++..
T Consensus        82 -~~d~~d~ivIA   92 (226)
T COG2384          82 -LEDEIDVIVIA   92 (226)
T ss_pred             -ccCCcCEEEEe
Confidence             23467776443

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.34  E-value=1.3e-05  Score=59.40  Aligned_cols=82  Identities=15%  Similarity=0.202  Sum_probs=67.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++..|||.+++.|+-+..+++.+..++.+++.|+++.-+...++++++ +.      .++.....|..+....    .
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~----~  152 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPK----K  152 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHH----H
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeecccccccc----c
Confidence            57889999999999999999999998788999999999999999999999 65      7888888886552221    1


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ....||.|+...+
T Consensus       153 ~~~~fd~VlvDaP  165 (283)
T PF01189_consen  153 PESKFDRVLVDAP  165 (283)
T ss_dssp             HTTTEEEEEEECS
T ss_pred             cccccchhhcCCC
Confidence            2335999988776

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.33  E-value=2.2e-06  Score=62.70  Aligned_cols=114  Identities=14%  Similarity=0.250  Sum_probs=66.8

Q ss_pred             HHHHHHHhcccCC-CCCeEEEEccc--CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCc--EEEE
Q psy5757          16 ILTYLSIIQPHLN-ENSKVLEIGSG--SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGH--IKFV   90 (139)
Q Consensus        16 ~~~~~~~l~~~~~-~~~~iLdiG~G--~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~--i~~~   90 (139)
                      ..+....+..  . .-..+||||||  |....-.+++...|+++|+-+|.+|-.+..++..+..       .++  ..++
T Consensus        56 l~RaVr~la~--~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~-------~~~g~t~~v  126 (267)
T PF04672_consen   56 LRRAVRYLAE--EAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD-------NPRGRTAYV  126 (267)
T ss_dssp             HHHHHHHHHC--TT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--------TTSEEEEE
T ss_pred             HHHHHHHHHH--hcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC-------CCCccEEEE
Confidence            3444444431  2 33579999999  4456777888888899999999999999999888766       244  8899


Q ss_pred             EccchhhhHHH-h-----hhccCCceeEEecCcccccccc---ceeee--eeeccCCCCC
Q psy5757          91 ALGMIKRIETV-E-----LMMKFDRYDFLPHAPAESWMNI---PVCIN--YTATMPEGSY  139 (139)
Q Consensus        91 ~~d~~~~~~~~-~-----~~~~~~~~D~vi~~~~~~~~~~---p~~~~--~~~~~p~g~~  139 (139)
                      .+|+.+ ...+ .     .-..+++-=.++...++||+.|   |.++.  |+..+|.|||
T Consensus       127 ~aD~r~-p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~  185 (267)
T PF04672_consen  127 QADLRD-PEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSY  185 (267)
T ss_dssp             E--TT--HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-E
T ss_pred             eCCCCC-HHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCce
Confidence            999887 2222 1     1112334457888899999976   33333  7888888886

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.31  E-value=3.7e-06  Score=55.72  Aligned_cols=56  Identities=16%  Similarity=0.270  Sum_probs=46.5

Q ss_pred             eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      .++|+|||.|..+..+++.. +.++++++|.++.+.+.+++++.. +.      .+++++...+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al   57 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAV   57 (143)
T ss_pred             CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeee
Confidence            37999999999999999887 466899999999999999999877 33      4566666553

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG2361|consensus

Probab=98.30  E-value=4.3e-07  Score=65.09  Aligned_cols=100  Identities=14%  Similarity=0.109  Sum_probs=68.7

Q ss_pred             eEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCce
Q psy5757          32 KVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRY  110 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~  110 (139)
                      +|||+|||.|.....+.+-.+ ++..++++|.+|.+++..+++....      ..++...+-|+..  +.+..+...+++
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~------e~~~~afv~Dlt~--~~~~~~~~~~sv  145 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD------ESRVEAFVWDLTS--PSLKEPPEEGSV  145 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc------hhhhcccceeccc--hhccCCCCcCcc
Confidence            799999999999999998763 2378999999999999999887661      1344444444332  222233345678


Q ss_pred             eEEecCccccc-----cccceeeeeeeccCCCCC
Q psy5757         111 DFLPHAPAESW-----MNIPVCINYTATMPEGSY  139 (139)
Q Consensus       111 D~vi~~~~~~~-----~~~p~~~~~~~~~p~g~~  139 (139)
                      |.+.+-.++.-     +.......++.++|+|++
T Consensus       146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~l  179 (264)
T KOG2361|consen  146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSL  179 (264)
T ss_pred             ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEE
Confidence            88766555443     334456668888999863

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.30  E-value=7.6e-06  Score=60.90  Aligned_cols=101  Identities=17%  Similarity=0.235  Sum_probs=51.5

Q ss_pred             HHHHHHHhcccC---CCCCeEEEEcccCChh-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhh-ccccccCCcEEEE
Q psy5757          16 ILTYLSIIQPHL---NENSKVLEIGSGSGYL-TNMISELMNSTGQVIGIEHVPQLVNSSIQNILHS-NARLLTDGHIKFV   90 (139)
Q Consensus        16 ~~~~~~~l~~~~---~~~~~iLdiG~G~G~~-~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-~~~~~~~~~i~~~   90 (139)
                      +.++.+.+....   ...-++||||||.... .+-.++..  .-+++|.|+++..++.|+++...+ .   + ..+|+++
T Consensus        86 i~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~---L-~~~I~l~  159 (299)
T PF05971_consen   86 IHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPN---L-ESRIELR  159 (299)
T ss_dssp             HHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEEE
T ss_pred             HHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhccc---c-ccceEEE
Confidence            444555554211   1245799999996643 33333333  239999999999999999999873 3   2 4678876


Q ss_pred             Eccchh-hhHHHhhhccCCceeEEecCcccccccc
Q psy5757          91 ALGMIK-RIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        91 ~~d~~~-~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                      ...-.. .+..+  ..+.+.||+..|||+||--.+
T Consensus       160 ~~~~~~~i~~~i--~~~~e~~dftmCNPPFy~s~~  192 (299)
T PF05971_consen  160 KQKNPDNIFDGI--IQPNERFDFTMCNPPFYSSQE  192 (299)
T ss_dssp             E--ST-SSTTTS--TT--S-EEEEEE-----SS--
T ss_pred             EcCCccccchhh--hcccceeeEEecCCccccChh
Confidence            543221 11211  123458999999999987554

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.27  E-value=2.9e-05  Score=57.57  Aligned_cols=93  Identities=16%  Similarity=0.237  Sum_probs=72.3

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+++.|.  .+++...+|..-|.|+.+..+.+.+++.++++++|.++++++.|++.+...      .++++++++++.
T Consensus        12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~------~~r~~~v~~~F~   83 (314)
T COG0275          12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF------DGRVTLVHGNFA   83 (314)
T ss_pred             HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc------CCcEEEEeCcHH
Confidence            456666665  477789999999999999999999987789999999999999999998772      268999999966


Q ss_pred             hhhHHHhhhccCCceeEEecCc
Q psy5757          96 KRIETVELMMKFDRYDFLPHAP  117 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~  117 (139)
                      +....+ .....+++|-|+...
T Consensus        84 ~l~~~l-~~~~i~~vDGiL~DL  104 (314)
T COG0275          84 NLAEAL-KELGIGKVDGILLDL  104 (314)
T ss_pred             HHHHHH-HhcCCCceeEEEEec
Confidence            633322 222345677776554

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.24  E-value=4.3e-06  Score=55.74  Aligned_cols=49  Identities=29%  Similarity=0.537  Sum_probs=42.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc---CCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM---NSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~---~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      .+...|+|+|||.|+++..++..+   .+..+++++|.++..++.+.++.+.
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~   75 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK   75 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH
Confidence            556799999999999999999933   2456999999999999999888876

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=98.23  E-value=7.8e-06  Score=61.12  Aligned_cols=106  Identities=13%  Similarity=0.242  Sum_probs=71.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+++.+.  .+++..++|..-|.|+.+..+.+..++ ++++|+|.|+.+++.|++++..     . .+++.++++++.
T Consensus         9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~-----~-~~r~~~~~~~F~   79 (310)
T PF01795_consen    9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK-----F-DDRFIFIHGNFS   79 (310)
T ss_dssp             HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC-----C-CTTEEEEES-GG
T ss_pred             HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh-----c-cceEEEEeccHH
Confidence            456677775  577889999999999999999999965 8999999999999999988765     1 368999999977


Q ss_pred             hhhHHHhhhc-cCCceeEEecCcc--ccccccc-eeeeee
Q psy5757          96 KRIETVELMM-KFDRYDFLPHAPA--ESWMNIP-VCINYT  131 (139)
Q Consensus        96 ~~~~~~~~~~-~~~~~D~vi~~~~--~~~~~~p-~~~~~~  131 (139)
                      + +..+.... ...++|-|+...-  .+.+.+| .|+.|.
T Consensus        80 ~-l~~~l~~~~~~~~~dgiL~DLGvSS~Qld~~~RGFSf~  118 (310)
T PF01795_consen   80 N-LDEYLKELNGINKVDGILFDLGVSSMQLDDPERGFSFR  118 (310)
T ss_dssp             G-HHHHHHHTTTTS-EEEEEEE-S--HHHHHTGGGSSSSS
T ss_pred             H-HHHHHHHccCCCccCEEEEccccCHHHhCCCCCCCCCC
Confidence            7 44332333 4557898877653  3344444 455554

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=98.21  E-value=5.5e-06  Score=60.72  Aligned_cols=95  Identities=12%  Similarity=0.073  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +..++||-+|.|-|+..+.+.+.-.   +|+.+|+|+.+++.+++.+.. ..  -+.+++++++..     +.    ...
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~~-----~~----~~~  136 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQ-----LL----DLD  136 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEeeh-----hh----hcc
Confidence            5668999999999999999999853   999999999999999997765 21  255688888752     21    112


Q ss_pred             CCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      .++||+||....+.  .+......+.+.|+|.
T Consensus       137 ~~~fDVIIvDs~~~--~~fy~~~~~~L~~~Gi  166 (262)
T PRK00536        137 IKKYDLIICLQEPD--IHKIDGLKRMLKEDGV  166 (262)
T ss_pred             CCcCCEEEEcCCCC--hHHHHHHHHhcCCCcE
Confidence            36799999996521  1112233556666653

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=98.13  E-value=1e-05  Score=64.23  Aligned_cols=107  Identities=12%  Similarity=0.134  Sum_probs=78.6

Q ss_pred             hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCC---CceEEEEeCCHHHHHHHHHHHHh-hcccc
Q psy5757           6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNS---TGQVIGIEHVPQLVNSSIQNILH-SNARL   81 (139)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~---~~~v~~~d~~~~~~~~a~~~~~~-~~~~~   81 (139)
                      .|..+++.+++..+.+.+.+  .+..+|+|..||+|++.....+....   +...+|.|+++.....++.++-. +.   
T Consensus       165 ~GEfyTP~~v~~liv~~l~~--~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi---  239 (489)
T COG0286         165 AGEFYTPREVSELIVELLDP--EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI---  239 (489)
T ss_pred             CCccCChHHHHHHHHHHcCC--CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC---
Confidence            37888999988888888874  66679999999999988888887742   25789999999999999999877 54   


Q ss_pred             ccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          82 LTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        82 ~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                        ..++...++|-..... ........+||.|++||++.
T Consensus       240 --~~~~~i~~~dtl~~~~-~~~~~~~~~~D~viaNPPf~  275 (489)
T COG0286         240 --EGDANIRHGDTLSNPK-HDDKDDKGKFDFVIANPPFS  275 (489)
T ss_pred             --CccccccccccccCCc-ccccCCccceeEEEeCCCCC
Confidence              1145566665432111 00011235699999999975

>KOG4589|consensus

Probab=98.08  E-value=6.8e-06  Score=57.06  Aligned_cols=76  Identities=14%  Similarity=0.194  Sum_probs=56.2

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEc-cchhhh--HHHhh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVAL-GMIKRI--ETVEL  103 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~--~~~~~  103 (139)
                      ++++.+|||+||..|+++....++.+|.+.|+|+|+.+-                .+.+.++++.+ |+.+..  ..+-+
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----------------~p~~Ga~~i~~~dvtdp~~~~ki~e  130 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----------------EPPEGATIIQGNDVTDPETYRKIFE  130 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----------------cCCCCcccccccccCCHHHHHHHHH
Confidence            578899999999999999999999989999999998731                11255666666 666521  23334


Q ss_pred             hccCCceeEEecCcc
Q psy5757         104 MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~  118 (139)
                      ..+...+|+|+|...
T Consensus       131 ~lp~r~VdvVlSDMa  145 (232)
T KOG4589|consen  131 ALPNRPVDVVLSDMA  145 (232)
T ss_pred             hCCCCcccEEEeccC
Confidence            445667899888765

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.06  E-value=1.2e-05  Score=59.80  Aligned_cols=122  Identities=8%  Similarity=0.113  Sum_probs=72.3

Q ss_pred             ccChHHHHHHHHHhcccCCCCCeEEEEcccCCh----hHHHHHHHcC---CCceEEEEeCCHHHHHHHHHHHHh-h-cc-
Q psy5757          10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGY----LTNMISELMN---STGQVIGIEHVPQLVNSSIQNILH-S-NA-   79 (139)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~----~~~~l~~~~~---~~~~v~~~d~~~~~~~~a~~~~~~-~-~~-   79 (139)
                      |-.+.....+.+.+... ...-+||..||+||.    ++..+.+..+   .+.+++|.|+|+.+++.|++..-. . ++ 
T Consensus        97 FRd~~~f~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~  175 (287)
T PRK10611         97 FREAHHFPILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKT  175 (287)
T ss_pred             cCCcHHHHHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhc
Confidence            33444444444444321 233699999999994    3333344321   135899999999999999877421 0 00 


Q ss_pred             -------cccc----------------CCcEEEEEccchhhhHHHhhhc-cCCceeEEecCccccccccc-----eeeee
Q psy5757          80 -------RLLT----------------DGHIKFVALGMIKRIETVELMM-KFDRYDFLPHAPAESWMNIP-----VCINY  130 (139)
Q Consensus        80 -------~~~~----------------~~~i~~~~~d~~~~~~~~~~~~-~~~~~D~vi~~~~~~~~~~p-----~~~~~  130 (139)
                             +.+.                -..++|...|..+      .+. ..+.||+|+|.+++.++..+     ....+
T Consensus       176 ~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~------~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~  249 (287)
T PRK10611        176 LSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLA------KQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFV  249 (287)
T ss_pred             CCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCC------CCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHH
Confidence                   0010                0234555555332      011 13679999999998887654     34558


Q ss_pred             eeccCCCC
Q psy5757         131 TATMPEGS  138 (139)
Q Consensus       131 ~~~~p~g~  138 (139)
                      +.++|+|-
T Consensus       250 ~~L~pgG~  257 (287)
T PRK10611        250 PLLKPDGL  257 (287)
T ss_pred             HHhCCCcE
Confidence            88899884

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.04  E-value=9.1e-06  Score=57.27  Aligned_cols=113  Identities=15%  Similarity=0.088  Sum_probs=69.8

Q ss_pred             HHHHHhcccCCCCC-eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcE-EEEEccc
Q psy5757          18 TYLSIIQPHLNENS-KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHI-KFVALGM   94 (139)
Q Consensus        18 ~~~~~l~~~~~~~~-~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i-~~~~~d~   94 (139)
                      -+++.|.+.+++.. +|||||||||-.+..++..+ |..+-...|.+++.....+..... +.      +|+ .-+..|+
T Consensus        13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~------~Nv~~P~~lDv   85 (204)
T PF06080_consen   13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGL------PNVRPPLALDV   85 (204)
T ss_pred             HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCC------cccCCCeEeec
Confidence            34555555455555 49999999999999999999 456777889998876555555444 32      232 1123444


Q ss_pred             hhh-hHH-HhhhccCCceeEEecCccccccccce-----eeeeeeccCCC
Q psy5757          95 IKR-IET-VELMMKFDRYDFLPHAPAESWMNIPV-----CINYTATMPEG  137 (139)
Q Consensus        95 ~~~-~~~-~~~~~~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g  137 (139)
                      .+. +.- .......+.||.|++.+.+|-++-..     ....+.++|+|
T Consensus        86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG  135 (204)
T PF06080_consen   86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGG  135 (204)
T ss_pred             CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCC
Confidence            432 210 00011245799999999999877432     22244555555

The function of this family is unknown.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.04  E-value=1.3e-05  Score=56.43  Aligned_cols=122  Identities=14%  Similarity=0.206  Sum_probs=64.2

Q ss_pred             ccChHHHHHHHHHhcc-cC---C--CCCeEEEEcccCCh----hHHHHHHHc----CCCceEEEEeCCHHHHHHHHHHHH
Q psy5757          10 IGGISAILTYLSIIQP-HL---N--ENSKVLEIGSGSGY----LTNMISELM----NSTGQVIGIEHVPQLVNSSIQNIL   75 (139)
Q Consensus        10 ~~~~~~~~~~~~~l~~-~~---~--~~~~iLdiG~G~G~----~~~~l~~~~----~~~~~v~~~d~~~~~~~~a~~~~~   75 (139)
                      |-.+.....+.+.+.+ .+   +  +.-+||..||+||.    ++..+.+..    +.+.+++|.|+|+.+++.|++-.-
T Consensus         6 FRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y   85 (196)
T PF01739_consen    6 FRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIY   85 (196)
T ss_dssp             TTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEE
T ss_pred             cCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCC
Confidence            3344445555555542 11   2  34589999999994    333344421    114589999999999999987642


Q ss_pred             h--hcc--------ccc-c------------CCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccce-----e
Q psy5757          76 H--SNA--------RLL-T------------DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPV-----C  127 (139)
Q Consensus        76 ~--~~~--------~~~-~------------~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~-----~  127 (139)
                      .  .++        ..+ .            ..+++|...|..+      .....+.||+|+|.+++-++..+.     .
T Consensus        86 ~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~------~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~  159 (196)
T PF01739_consen   86 PERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD------PDPPFGRFDLIFCRNVLIYFDPETQQRVLR  159 (196)
T ss_dssp             EGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-------S------EEEEEE-SSGGGS-HHHHHHHHH
T ss_pred             CHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC------CCcccCCccEEEecCEEEEeCHHHHHHHHH
Confidence            1  110        001 0            1466777777544      122456799999999988887653     3


Q ss_pred             eeeeeccCCC
Q psy5757         128 INYTATMPEG  137 (139)
Q Consensus       128 ~~~~~~~p~g  137 (139)
                      ..+..+.|+|
T Consensus       160 ~l~~~L~pgG  169 (196)
T PF01739_consen  160 RLHRSLKPGG  169 (196)
T ss_dssp             HHGGGEEEEE
T ss_pred             HHHHHcCCCC
Confidence            3366666665

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.00  E-value=8.5e-05  Score=55.99  Aligned_cols=76  Identities=12%  Similarity=0.154  Sum_probs=57.0

Q ss_pred             HHHhcccCCCCCeEEEEcccCChhHHHHHHHcCC---CceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEE--EEcc
Q psy5757          20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNS---TGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKF--VALG   93 (139)
Q Consensus        20 ~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~---~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~--~~~d   93 (139)
                      ...|...+.++..++|+|||+|.-+..|.+.+..   ..+.+++|+|.++++.+.+++.. ..      +.+++  +++|
T Consensus        67 ~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~------p~l~v~~l~gd  140 (319)
T TIGR03439        67 SSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF------SHVRCAGLLGT  140 (319)
T ss_pred             HHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC------CCeEEEEEEec
Confidence            3344444667779999999999998888887732   35789999999999999999883 22      55555  8899


Q ss_pred             chhhhHHH
Q psy5757          94 MIKRIETV  101 (139)
Q Consensus        94 ~~~~~~~~  101 (139)
                      +.+.+..+
T Consensus       141 y~~~l~~l  148 (319)
T TIGR03439       141 YDDGLAWL  148 (319)
T ss_pred             HHHHHhhc
Confidence            87765433

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.96  E-value=4.2e-05  Score=54.45  Aligned_cols=76  Identities=17%  Similarity=0.183  Sum_probs=60.3

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      +.+++|||+|.|..+..++-.. |+.+++-+|....-+...+.....     ++.+|++++++.+.+    +..   ..+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~e-----L~L~nv~i~~~RaE~----~~~---~~~  134 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKE-----LGLENVEIVHGRAEE----FGQ---EKK  134 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHH-----hCCCCeEEehhhHhh----ccc---ccc
Confidence            5899999999999999999665 567899999998888888888777     334899999998544    211   123


Q ss_pred             -eeEEecCcc
Q psy5757         110 -YDFLPHAPA  118 (139)
Q Consensus       110 -~D~vi~~~~  118 (139)
                       ||+|.+...
T Consensus       135 ~~D~vtsRAv  144 (215)
T COG0357         135 QYDVVTSRAV  144 (215)
T ss_pred             cCcEEEeehc
Confidence             999988875

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.96  E-value=3.6e-05  Score=54.68  Aligned_cols=85  Identities=15%  Similarity=0.164  Sum_probs=54.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      ...+.||+|||-|..|..+....-.  +|-.+|.++..++.|++.+....     ..-.++.+..+.+ +.     .+..
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~--~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~-f~-----P~~~  121 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFD--EVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQD-FT-----PEEG  121 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-S--EEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----------TT
T ss_pred             CcceEEecccccchhHHHHHHHhcC--EeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhh-cc-----CCCC
Confidence            3468999999999999877554433  99999999999999998775511     1223555554333 22     1235


Q ss_pred             ceeEEecCccccccccce
Q psy5757         109 RYDFLPHAPAESWMNIPV  126 (139)
Q Consensus       109 ~~D~vi~~~~~~~~~~p~  126 (139)
                      +||+||+.+++.|+.|..
T Consensus       122 ~YDlIW~QW~lghLTD~d  139 (218)
T PF05891_consen  122 KYDLIWIQWCLGHLTDED  139 (218)
T ss_dssp             -EEEEEEES-GGGS-HHH
T ss_pred             cEeEEEehHhhccCCHHH
Confidence            899999999999988753

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.90  E-value=0.00021  Score=54.73  Aligned_cols=83  Identities=16%  Similarity=0.236  Sum_probs=64.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNST-GQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~-~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .+++.+|||.+++.|+-|..+++.+..+ ..|+++|.++.-++..++++++ +.      .|+..+..|.......   .
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------~nv~~~~~d~~~~~~~---~  224 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------RNVIVVNKDARRLAEL---L  224 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------CceEEEeccccccccc---c
Confidence            5889999999999999999999999653 4569999999999999999999 55      7777777775431111   1


Q ss_pred             ccCCceeEEecCcc
Q psy5757         105 MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 ~~~~~~D~vi~~~~  118 (139)
                      ...++||.|+..++
T Consensus       225 ~~~~~fD~iLlDaP  238 (355)
T COG0144         225 PGGEKFDRILLDAP  238 (355)
T ss_pred             cccCcCcEEEECCC
Confidence            11225999987776

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.89  E-value=5.9e-05  Score=55.72  Aligned_cols=97  Identities=15%  Similarity=0.193  Sum_probs=62.4

Q ss_pred             HHHHHHHhcccC--CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEc
Q psy5757          16 ILTYLSIIQPHL--NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVAL   92 (139)
Q Consensus        16 ~~~~~~~l~~~~--~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~   92 (139)
                      +.+++..+....  ....+|||+|||.|....++.+.++...+++++|.|+.+++.++..+.. ..     .....+. .
T Consensus        18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-----~~~~~~~-~   91 (274)
T PF09243_consen   18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-----NRNAEWR-R   91 (274)
T ss_pred             HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-----cccchhh-h
Confidence            445555554322  3457999999999988877777765445899999999999999887765 11     0111111 1


Q ss_pred             cchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757          93 GMIKRIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        93 d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                      +.   ..   ...+....|+|++..++..+.+
T Consensus        92 ~~---~~---~~~~~~~~DLvi~s~~L~EL~~  117 (274)
T PF09243_consen   92 VL---YR---DFLPFPPDDLVIASYVLNELPS  117 (274)
T ss_pred             hh---hc---ccccCCCCcEEEEehhhhcCCc
Confidence            10   00   1112334599999999888776

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.86  E-value=0.0003  Score=50.26  Aligned_cols=83  Identities=19%  Similarity=0.269  Sum_probs=60.0

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .++++.+||-+|+.+|.+...++.-.++++.|+++|.++...+..-...++       -.|+--+..|+.. .+.+..- 
T Consensus        70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-------R~NIiPIl~DAr~-P~~Y~~l-  140 (229)
T PF01269_consen   70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-------RPNIIPILEDARH-PEKYRML-  140 (229)
T ss_dssp             S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-------STTEEEEES-TTS-GGGGTTT-
T ss_pred             CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-------CCceeeeeccCCC-hHHhhcc-
Confidence            468899999999999999999999998899999999999777766655544       2788888899875 3333211 


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                       .+.+|++++.-+
T Consensus       141 -v~~VDvI~~DVa  152 (229)
T PF01269_consen  141 -VEMVDVIFQDVA  152 (229)
T ss_dssp             -S--EEEEEEE-S
T ss_pred             -cccccEEEecCC
Confidence             347899987754

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.72  E-value=3.8e-05  Score=53.04  Aligned_cols=75  Identities=15%  Similarity=0.317  Sum_probs=48.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhhc-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELMM-  105 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~-  105 (139)
                      ++.++||+||++|+++..+.++..+.++++|+|+.+.         ..       .+++..+.+|+.+.  ...+.... 
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~-------~~~~~~i~~d~~~~~~~~~i~~~~~   86 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DP-------LQNVSFIQGDITNPENIKDIRKLLP   86 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS--------TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------cc-------ccceeeeecccchhhHHHhhhhhcc
Confidence            3489999999999999999999855679999999864         11       14566666666541  11221111 


Q ss_pred             -cCCceeEEecCccc
Q psy5757         106 -KFDRYDFLPHAPAE  119 (139)
Q Consensus       106 -~~~~~D~vi~~~~~  119 (139)
                       ....+|+|++..+.
T Consensus        87 ~~~~~~dlv~~D~~~  101 (181)
T PF01728_consen   87 ESGEKFDLVLSDMAP  101 (181)
T ss_dssp             TTTCSESEEEE----
T ss_pred             ccccCcceecccccc
Confidence             12579999999853

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.71  E-value=0.00016  Score=52.15  Aligned_cols=83  Identities=16%  Similarity=0.212  Sum_probs=50.1

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc---cCCcEEEEEccchhhhHHHhhhcc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL---TDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~---~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .+|||..+|.|..+..++..+ .  +|+++|-||.+....+.-+++ ......   ...+++++++|..+.+.     .+
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G-~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-----~~  148 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLG-C--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-----QP  148 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-----CH
T ss_pred             CEEEECCCcchHHHHHHHccC-C--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-----hc
Confidence            389999999999999999754 3  899999999887777666554 110001   12589999999877544     34


Q ss_pred             CCceeEEecCccccc
Q psy5757         107 FDRYDFLPHAPAESW  121 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~  121 (139)
                      ..++|+|+..|=|..
T Consensus       149 ~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  149 DNSFDVVYFDPMFPE  163 (234)
T ss_dssp             SS--SEEEE--S---
T ss_pred             CCCCCEEEECCCCCC
Confidence            578999999987654

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.69  E-value=6.8e-05  Score=47.24  Aligned_cols=75  Identities=17%  Similarity=0.258  Sum_probs=26.5

Q ss_pred             EEEcccCChhHHHHHHHcCCCc--eEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCce
Q psy5757          34 LEIGSGSGYLTNMISELMNSTG--QVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRY  110 (139)
Q Consensus        34 LdiG~G~G~~~~~l~~~~~~~~--~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~  110 (139)
                      ||+|+..|..+..+++..++..  +++++|..+. .+.+++.++. +.     ..+++++.++..+.++.+.    .+++
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----~~~~~~~~g~s~~~l~~~~----~~~~   70 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----SDRVEFIQGDSPDFLPSLP----DGPI   70 (106)
T ss_dssp             --------------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHH----H--E
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----CCeEEEEEcCcHHHHHHcC----CCCE
Confidence            6999999999999998876543  7999999985 3334444443 33     3679999999877555442    4579


Q ss_pred             eEEecCcc
Q psy5757         111 DFLPHAPA  118 (139)
Q Consensus       111 D~vi~~~~  118 (139)
                      |+++....
T Consensus        71 dli~iDg~   78 (106)
T PF13578_consen   71 DLIFIDGD   78 (106)
T ss_dssp             EEEEEES-
T ss_pred             EEEEECCC
Confidence            99988874

>PRK11524 putative methyltransferase; Provisional

Probab=97.68  E-value=0.00027  Score=52.44  Aligned_cols=46  Identities=20%  Similarity=0.161  Sum_probs=41.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      .+|..|||..+|||.++.+..+...   +.+|+|++++.++.|++++..
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHh
Confidence            7899999999999999888877765   999999999999999999864

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.68  E-value=0.00014  Score=55.10  Aligned_cols=71  Identities=14%  Similarity=0.216  Sum_probs=51.1

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +.+++++||+||++|+++..++++..   +|+++|..+ +-   .. +..       .++++....|.....+      +
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~---~~-L~~-------~~~V~h~~~d~fr~~p------~  267 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MA---QS-LMD-------TGQVEHLRADGFKFRP------P  267 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cC---Hh-hhC-------CCCEEEEeccCcccCC------C
Confidence            36889999999999999999999875   999999653 11   11 111       3778888887544211      1


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      ...+|+++|..+
T Consensus       268 ~~~vDwvVcDmv  279 (357)
T PRK11760        268 RKNVDWLVCDMV  279 (357)
T ss_pred             CCCCCEEEEecc
Confidence            456899988876

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.66  E-value=1.9e-05  Score=55.85  Aligned_cols=91  Identities=11%  Similarity=0.107  Sum_probs=48.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      +..+++++.. .++...|.|+|||.+.++..+....    +|..+|...                    .|-.++..|+.
T Consensus        60 vd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~~~----~V~SfDLva--------------------~n~~Vtacdia  114 (219)
T PF05148_consen   60 VDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPNKH----KVHSFDLVA--------------------PNPRVTACDIA  114 (219)
T ss_dssp             HHHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S-------EEEEESS---------------------SSTTEEES-TT
T ss_pred             HHHHHHHHHh-cCCCEEEEECCCchHHHHHhcccCc----eEEEeeccC--------------------CCCCEEEecCc
Confidence            5678888873 4556799999999999886554322    699999874                    23335667853


Q ss_pred             hhhHHHhhhccCCceeEEecCcccccc--ccceeeeeeeccCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWM--NIPVCINYTATMPEG  137 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~--~~p~~~~~~~~~p~g  137 (139)
                      +    ++  .+.+++|++++..++.=-  .+.+...++.++|+|
T Consensus       115 ~----vP--L~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G  152 (219)
T PF05148_consen  115 N----VP--LEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGG  152 (219)
T ss_dssp             S-----S----TT-EEEEEEES---SS-HHHHHHHHHHHEEEEE
T ss_pred             c----Cc--CCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCc
Confidence            3    32  346789999999885422  233333455555555

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.65  E-value=0.00035  Score=50.70  Aligned_cols=92  Identities=13%  Similarity=0.009  Sum_probs=60.1

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      ..+.+.+........+|+|||||.--++....... +.+.++|+||+..+++.....+.. +       .+.++.+.|..
T Consensus        93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~-------~~~~~~v~Dl~  164 (251)
T PF07091_consen   93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLG-------VPHDARVRDLL  164 (251)
T ss_dssp             HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT--------CEEEEEE-TT
T ss_pred             HHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhC-------CCcceeEeeee
Confidence            34444444445667899999999999988887655 567999999999999999888776 3       35666666754


Q ss_pred             hhhHHHhhhccCCceeEEecCccccccc
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                      ...       +.+..|+...--.+|.+.
T Consensus       165 ~~~-------~~~~~DlaLllK~lp~le  185 (251)
T PF07091_consen  165 SDP-------PKEPADLALLLKTLPCLE  185 (251)
T ss_dssp             TSH-------TTSEESEEEEET-HHHHH
T ss_pred             ccC-------CCCCcchhhHHHHHHHHH
Confidence            321       345678887766655443

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.64  E-value=0.00027  Score=52.21  Aligned_cols=80  Identities=16%  Similarity=0.209  Sum_probs=46.9

Q ss_pred             CCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH-h-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          30 NSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL-H-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        30 ~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~-~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..+|+=|||| .--.+..+++...+.+.++++|+++++++.+++... . ++     ..++.++.+|..+...      .
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----~~~m~f~~~d~~~~~~------d  189 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----SKRMSFITADVLDVTY------D  189 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG-G------G
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----cCCeEEEecchhcccc------c
Confidence            3599999999 455666666665556789999999999999999887 3 55     5789999999654211      2


Q ss_pred             CCceeEEecCcccc
Q psy5757         107 FDRYDFLPHAPAES  120 (139)
Q Consensus       107 ~~~~D~vi~~~~~~  120 (139)
                      ...||+|+....-.
T Consensus       190 l~~~DvV~lAalVg  203 (276)
T PF03059_consen  190 LKEYDVVFLAALVG  203 (276)
T ss_dssp             ----SEEEE-TT-S
T ss_pred             cccCCEEEEhhhcc
Confidence            34689987776533

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.64  E-value=0.0002  Score=52.69  Aligned_cols=102  Identities=10%  Similarity=0.159  Sum_probs=64.8

Q ss_pred             CCeEEEEcccCC----hhHHHHHHHcC----CCceEEEEeCCHHHHHHHHHHHHh------hc-----cccc---cC---
Q psy5757          30 NSKVLEIGSGSG----YLTNMISELMN----STGQVIGIEHVPQLVNSSIQNILH------SN-----ARLL---TD---   84 (139)
Q Consensus        30 ~~~iLdiG~G~G----~~~~~l~~~~~----~~~~v~~~d~~~~~~~~a~~~~~~------~~-----~~~~---~~---   84 (139)
                      .-+||..||+||    +.+..+.+.++    ...+++|.|+|..+++.|+.-.-.      ++     +..+   ..   
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            458999999999    35555556553    256999999999999998754311      00     0000   00   


Q ss_pred             -------CcEEEEEccchhhhHHHhhhc-cCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757          85 -------GHIKFVALGMIKRIETVELMM-KFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus        85 -------~~i~~~~~d~~~~~~~~~~~~-~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                             ..|.|...|..+       .. ..+.||+|+|.+++-.+..+.     ...+..+.|+|.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~-------~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~  236 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLD-------DSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGL  236 (268)
T ss_pred             EEChHHhcccEEeecCCCC-------CccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCE
Confidence                   223333333322       22 235699999999988888764     344677777774

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.62  E-value=0.0003  Score=49.67  Aligned_cols=53  Identities=25%  Similarity=0.214  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          14 SAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        14 ~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      ..+.+++....   .++..|||.-||+|.++.+..+...   +.+|+|++++.++.|++
T Consensus       179 ~l~~~lI~~~t---~~gdiVlDpF~GSGTT~~aa~~l~R---~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  179 ELIERLIKAST---NPGDIVLDPFAGSGTTAVAAEELGR---RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHS----TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHhhh---ccceeeehhhhccChHHHHHHHcCC---eEEEEeCCHHHHHHhcC
Confidence            34555555544   7889999999999999998888775   89999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG3115|consensus

Probab=97.46  E-value=0.00028  Score=49.77  Aligned_cols=72  Identities=14%  Similarity=0.151  Sum_probs=54.2

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc-ccccCCcEEEEEccchhhhHHHh
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA-RLLTDGHIKFVALGMIKRIETVE  102 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~-~~~~~~~i~~~~~d~~~~~~~~~  102 (139)
                      .-.+.|||||-|++...|+..+ |+.-++|.||--...+..+++++. ... +-=...|+.+...+....++++.
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f  134 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFF  134 (249)
T ss_pred             cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchh
Confidence            3568999999999999999999 578999999998888888887765 210 00014678888888777666653

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.45  E-value=0.0018  Score=48.12  Aligned_cols=100  Identities=13%  Similarity=0.040  Sum_probs=72.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHh-hccccccCCcE-EEEEccchhhhHHHhhhc
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHI-KFVALGMIKRIETVELMM  105 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i-~~~~~d~~~~~~~~~~~~  105 (139)
                      ..-+||||.||.|.......+..+. ..++.-.|.++..++..++.++. ++      .++ +|.++|+.+ ..++..- 
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL------~~i~~f~~~dAfd-~~~l~~l-  206 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL------EDIARFEQGDAFD-RDSLAAL-  206 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC------ccceEEEecCCCC-HhHhhcc-
Confidence            3458999999999888888777743 35899999999999999999988 76      555 999999887 3322111 


Q ss_pred             cCCceeEEecCccccccccce------eeeeeeccCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPV------CINYTATMPEG  137 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~------~~~~~~~~p~g  137 (139)
                       .-+.++++....+..+.|-.      .-.+..+.|+|
T Consensus       207 -~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG  243 (311)
T PF12147_consen  207 -DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGG  243 (311)
T ss_pred             -CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCc
Confidence             12468888888777766632      22255566665

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK13699 putative methylase; Provisional

Probab=97.43  E-value=0.0011  Score=47.63  Aligned_cols=46  Identities=26%  Similarity=0.231  Sum_probs=41.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      .++..|||.-||+|..+.+..+...   +.+|+|++++..+.+.+++..
T Consensus       162 ~~g~~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        162 HPNAIVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHH
Confidence            6888999999999999988887765   899999999999999998876

>KOG1709|consensus

Probab=97.37  E-value=0.00086  Score=47.81  Aligned_cols=109  Identities=16%  Similarity=0.117  Sum_probs=73.1

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ++...+.+.   .+|.+||++|-|-|.....+.+.-+.  +-+-||.+|..++..++.-...      .+|+.+..+-  
T Consensus        91 Mha~A~ai~---tkggrvLnVGFGMgIidT~iQe~~p~--~H~IiE~hp~V~krmr~~gw~e------k~nViil~g~--  157 (271)
T KOG1709|consen   91 MHALAEAIS---TKGGRVLNVGFGMGIIDTFIQEAPPD--EHWIIEAHPDVLKRMRDWGWRE------KENVIILEGR--  157 (271)
T ss_pred             HHHHHHHHh---hCCceEEEeccchHHHHHHHhhcCCc--ceEEEecCHHHHHHHHhccccc------ccceEEEecc--
Confidence            444445553   67899999999999998888887643  6778999999999888776551      2677777775  


Q ss_pred             hhhHHHhhhccCCceeEEecCcc---ccccccceeeeeeeccCCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPA---ESWMNIPVCINYTATMPEGSY  139 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~---~~~~~~p~~~~~~~~~p~g~~  139 (139)
                        |++.....+++.||=|+..--   ..-+.+.-.-..+.++|+|.|
T Consensus       158 --WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~  202 (271)
T KOG1709|consen  158 --WEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVF  202 (271)
T ss_pred             --hHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceE
Confidence              554433445666888866543   111112222456778888864

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.36  E-value=0.00034  Score=49.00  Aligned_cols=74  Identities=20%  Similarity=0.258  Sum_probs=55.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      -.+++|||+|+|+|-.+...++....  .++..|++|......+-|.+.+-      -.+.+...|..         .+.
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~ang------v~i~~~~~d~~---------g~~  140 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANG------VSILFTHADLI---------GSP  140 (218)
T ss_pred             cccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhcc------ceeEEeecccc---------CCC
Confidence            36789999999999999999998854  89999999988888888877621      46677776632         134


Q ss_pred             CceeEEecCcc
Q psy5757         108 DRYDFLPHAPA  118 (139)
Q Consensus       108 ~~~D~vi~~~~  118 (139)
                      ..+|+++..-.
T Consensus       141 ~~~Dl~LagDl  151 (218)
T COG3897         141 PAFDLLLAGDL  151 (218)
T ss_pred             cceeEEEeece
Confidence            56888855443

>KOG3045|consensus

Probab=97.31  E-value=0.00015  Score=52.90  Aligned_cols=90  Identities=13%  Similarity=0.093  Sum_probs=63.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      +..+++.|.. ......|.|+|||-+.++.    ..  .-+|+.+|+.+                    .+-+++..|+.
T Consensus       168 ld~ii~~ik~-r~~~~vIaD~GCGEakiA~----~~--~~kV~SfDL~a--------------------~~~~V~~cDm~  220 (325)
T KOG3045|consen  168 LDVIIRKIKR-RPKNIVIADFGCGEAKIAS----SE--RHKVHSFDLVA--------------------VNERVIACDMR  220 (325)
T ss_pred             HHHHHHHHHh-CcCceEEEecccchhhhhh----cc--ccceeeeeeec--------------------CCCceeecccc
Confidence            4556666652 3556789999999998665    22  22899999874                    45567778855


Q ss_pred             hhhHHHhhhccCCceeEEecCcccc--ccccceeeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAES--WMNIPVCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~--~~~~p~~~~~~~~~p~g~  138 (139)
                      +    +  +.+++++|++++..++.  -+.++....|+.++|+|.
T Consensus       221 ~----v--Pl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~  259 (325)
T KOG3045|consen  221 N----V--PLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGL  259 (325)
T ss_pred             C----C--cCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCce
Confidence            4    2  34577899999988754  345667777888888885

>KOG3178|consensus

Probab=97.25  E-value=0.00033  Score=52.91  Aligned_cols=87  Identities=15%  Similarity=0.147  Sum_probs=65.5

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      -...+|+|.|.|..+..+...++   ++-+++.+...+..++..++         +.++.+-+|+.+..+         +
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~~P---------~  236 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQDTP---------K  236 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc---------CCcceecccccccCC---------C
Confidence            36789999999999999999775   89999999888777766642         347778888755322         2


Q ss_pred             eeEEecCccccccccceeee-----eeeccCCC
Q psy5757         110 YDFLPHAPAESWMNIPVCIN-----YTATMPEG  137 (139)
Q Consensus       110 ~D~vi~~~~~~~~~~p~~~~-----~~~~~p~g  137 (139)
                      -|+||.-+++|++.|-.+..     +..++|+|
T Consensus       237 ~daI~mkWiLhdwtDedcvkiLknC~~sL~~~G  269 (342)
T KOG3178|consen  237 GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGG  269 (342)
T ss_pred             cCeEEEEeecccCChHHHHHHHHHHHHhCCCCC
Confidence            47999999999998864433     55555555

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.23  E-value=0.0013  Score=47.39  Aligned_cols=41  Identities=20%  Similarity=0.237  Sum_probs=34.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHH
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSS   70 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a   70 (139)
                      .+++.+||+|+.||+++..+.++...  +|+++|.....+.+-
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~k  118 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWK  118 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHh
Confidence            57899999999999999999999754  999999886555443

>KOG3987|consensus

Probab=97.20  E-value=4.3e-05  Score=54.05  Aligned_cols=67  Identities=19%  Similarity=0.207  Sum_probs=48.2

Q ss_pred             hhhcc-cccChHHHHHHHHHhcc-cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757           4 VKIGA-AIGGISAILTYLSIIQP-HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus         4 ~~~~~-~~~~~~~~~~~~~~l~~-~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      ++.|+ ++-++....+++..=.+ .-....++||+|+|.|..+..++..+.   +|++.|.|..|....++.
T Consensus        85 lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk  153 (288)
T KOG3987|consen   85 LGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK  153 (288)
T ss_pred             cccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc
Confidence            45555 33455544444433321 234567999999999999999999987   899999999998887664

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.18  E-value=0.0036  Score=48.03  Aligned_cols=85  Identities=14%  Similarity=0.219  Sum_probs=63.2

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hc-cccccCCcEEEEEccchhhhHHHhhh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SN-ARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~-~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      ++..+++|-+|.|.|--.+.+.+..+ -.+++.+|.+|.+++.++++.-. .. --.+.+++++++..|+.++...    
T Consensus       287 ~~~a~~vLvlGGGDGLAlRellkyP~-~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~----  361 (508)
T COG4262         287 VRGARSVLVLGGGDGLALRELLKYPQ-VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT----  361 (508)
T ss_pred             ccccceEEEEcCCchHHHHHHHhCCC-cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh----
Confidence            35667999999999999999988653 34999999999999999854322 11 0114468899999998885542    


Q ss_pred             ccCCceeEEecCc
Q psy5757         105 MKFDRYDFLPHAP  117 (139)
Q Consensus       105 ~~~~~~D~vi~~~  117 (139)
                       ..+.||++|...
T Consensus       362 -a~~~fD~vIVDl  373 (508)
T COG4262         362 -AADMFDVVIVDL  373 (508)
T ss_pred             -hcccccEEEEeC
Confidence             234799998765

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.16  E-value=0.002  Score=42.92  Aligned_cols=53  Identities=6%  Similarity=0.070  Sum_probs=37.6

Q ss_pred             eEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCc
Q psy5757          56 QVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAP  117 (139)
Q Consensus        56 ~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~  117 (139)
                      +|+++||++++++.++++++. +.     ..++++++.+    .+++....+.+++|+++.|.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----~~~v~li~~s----He~l~~~i~~~~v~~~iFNL   54 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGL-----EDRVTLILDS----HENLDEYIPEGPVDAAIFNL   54 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES-----GGGGGGT--S--EEEEEEEE
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCC-----CCcEEEEECC----HHHHHhhCccCCcCEEEEEC
Confidence            689999999999999999998 55     3689999887    44444333335799999887

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.14  E-value=0.00028  Score=50.15  Aligned_cols=81  Identities=16%  Similarity=0.185  Sum_probs=54.8

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCce
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRY  110 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~  110 (139)
                      .++||+||=+......-...+    .|+.||+++                    ..-.+...|+.+. + ++ ..+.++|
T Consensus        53 lrlLEVGals~~N~~s~~~~f----dvt~IDLns--------------------~~~~I~qqDFm~r-p-lp-~~~~e~F  105 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSGWF----DVTRIDLNS--------------------QHPGILQQDFMER-P-LP-KNESEKF  105 (219)
T ss_pred             ceEEeecccCCCCcccccCce----eeEEeecCC--------------------CCCCceeeccccC-C-CC-CCcccce
Confidence            589999998776555544444    699999985                    3334566665441 1 11 1235689


Q ss_pred             eEEecCccccccccceeee------eeeccCCCC
Q psy5757         111 DFLPHAPAESWMNIPVCIN------YTATMPEGS  138 (139)
Q Consensus       111 D~vi~~~~~~~~~~p~~~~------~~~~~p~g~  138 (139)
                      |+|.+..++.++++|..+.      +..++|+|.
T Consensus       106 dvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen  106 DVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             eEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999996443      566666664

>KOG1501|consensus

Probab=97.10  E-value=0.0013  Score=51.49  Aligned_cols=52  Identities=23%  Similarity=0.328  Sum_probs=45.2

Q ss_pred             eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEE
Q psy5757          32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFV   90 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~   90 (139)
                      .+||||+|||-++.+.++.+..  .++++|.=..|.+.|++...+ +.     .++++++
T Consensus        69 ~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng~-----SdkI~vI  121 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNGM-----SDKINVI  121 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHHHhcCCC-----ccceeee
Confidence            6899999999999999999865  799999999999999999887 65     4666655

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.08  E-value=0.0021  Score=41.29  Aligned_cols=95  Identities=18%  Similarity=0.292  Sum_probs=53.9

Q ss_pred             EEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC-Ccee
Q psy5757          33 VLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF-DRYD  111 (139)
Q Consensus        33 iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~-~~~D  111 (139)
                      ++|+|||+|..+ .+.........++++|.++.++..++..... .    ....+.+...|....  .+  .... ..+|
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~--~~--~~~~~~~~d  121 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A----GLGLVDFVVADALGG--VL--PFEDSASFD  121 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c----CCCceEEEEeccccC--CC--CCCCCCcee
Confidence            999999999987 4444332113788999999988884444322 1    001156677664331  01  1112 3699


Q ss_pred             EEecCccccccc--cceeeeeeeccCCC
Q psy5757         112 FLPHAPAESWMN--IPVCINYTATMPEG  137 (139)
Q Consensus       112 ~vi~~~~~~~~~--~p~~~~~~~~~p~g  137 (139)
                      ++.+....++..  ......++.+.|+|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g  149 (257)
T COG0500         122 LVISLLVLHLLPPAKALRELLRVLKPGG  149 (257)
T ss_pred             EEeeeeehhcCCHHHHHHHHHHhcCCCc
Confidence            996666566554  22233344455554

>KOG1269|consensus

Probab=97.05  E-value=0.00064  Score=52.18  Aligned_cols=100  Identities=18%  Similarity=0.176  Sum_probs=75.1

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      ..+++..++|+|||.|.....+.....  +++++++.++..+..+...... .+     ..+-.++..|+-+      .+
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l-----~~k~~~~~~~~~~------~~  173 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYL-----DNKCNFVVADFGK------MP  173 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHh-----hhhcceehhhhhc------CC
Confidence            356777899999999999999998764  3999999998888777666655 44     2344456566322      12


Q ss_pred             ccCCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757         105 MKFDRYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      .+..+||.+.+.-+..+.+++.   ...|++++|+|.
T Consensus       174 fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~  210 (364)
T KOG1269|consen  174 FEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGL  210 (364)
T ss_pred             CCccccCcEEEEeecccCCcHHHHHHHHhcccCCCce
Confidence            3356799999999989888875   556999999985

>KOG1596|consensus

Probab=97.04  E-value=0.00099  Score=48.27  Aligned_cols=83  Identities=19%  Similarity=0.199  Sum_probs=61.1

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +++++.+||=+|+++|.....++.-..|++-|+++|.++..-..+...+++       -.|+.-++.|+.. ...+..  
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-------RtNiiPIiEDArh-P~KYRm--  222 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-------RTNIIPIIEDARH-PAKYRM--  222 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-------cCCceeeeccCCC-chheee--
Confidence            578999999999999999999999999999999999997665554444433       2677777788765 222211  


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      -..-+|+||+.-+
T Consensus       223 lVgmVDvIFaDva  235 (317)
T KOG1596|consen  223 LVGMVDVIFADVA  235 (317)
T ss_pred             eeeeEEEEeccCC
Confidence            1235788887654

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.01  E-value=0.00053  Score=54.15  Aligned_cols=88  Identities=11%  Similarity=0.155  Sum_probs=49.4

Q ss_pred             eEEEEcccCChhHHHHHHHcCCCceEEEE---eCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          32 KVLEIGSGSGYLTNMISELMNSTGQVIGI---EHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~---d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      .+||+|||+|+++.+|.++.-   ....+   |..+..++.|.++   ++         -...+-    +..-.++.+..
T Consensus       120 ~~LDvGcG~aSF~a~l~~r~V---~t~s~a~~d~~~~qvqfaleR---Gv---------pa~~~~----~~s~rLPfp~~  180 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLERNV---TTMSFAPNDEHEAQVQFALER---GV---------PAMIGV----LGSQRLPFPSN  180 (506)
T ss_pred             EEEeccceeehhHHHHhhCCc---eEEEcccccCCchhhhhhhhc---Cc---------chhhhh----hccccccCCcc
Confidence            579999999999999998752   22232   2333334444322   22         111111    11111345678


Q ss_pred             ceeEEecCcc-ccccccc---eeeeeeeccCCCC
Q psy5757         109 RYDFLPHAPA-ESWMNIP---VCINYTATMPEGS  138 (139)
Q Consensus       109 ~~D~vi~~~~-~~~~~~p---~~~~~~~~~p~g~  138 (139)
                      +||+|-|..+ ..|...-   +-...+.+.|+|-
T Consensus       181 ~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGy  214 (506)
T PF03141_consen  181 AFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGY  214 (506)
T ss_pred             chhhhhcccccccchhcccceeehhhhhhccCce
Confidence            8999977776 4455443   2223677888874

; GO: 0008168 methyltransferase activity

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.95  E-value=0.015  Score=42.09  Aligned_cols=78  Identities=10%  Similarity=0.089  Sum_probs=45.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..|++||=+| -.-..+.+++... ...+++.+|+++..++...+...+ ++      + ++..+.|+.+.++.    .-
T Consensus        43 L~gk~il~lG-DDDLtSlA~al~~-~~~~I~VvDiDeRll~fI~~~a~~~gl------~-i~~~~~DlR~~LP~----~~  109 (243)
T PF01861_consen   43 LEGKRILFLG-DDDLTSLALALTG-LPKRITVVDIDERLLDFINRVAEEEGL------P-IEAVHYDLRDPLPE----EL  109 (243)
T ss_dssp             STT-EEEEES--TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT---------EEEE---TTS---T----TT
T ss_pred             ccCCEEEEEc-CCcHHHHHHHhhC-CCCeEEEEEcCHHHHHHHHHHHHHcCC------c-eEEEEecccccCCH----HH
Confidence            4789999998 3334555555444 345999999999999999999988 65      4 89999998775542    12


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      .++||+++.+|+
T Consensus       110 ~~~fD~f~TDPP  121 (243)
T PF01861_consen  110 RGKFDVFFTDPP  121 (243)
T ss_dssp             SS-BSEEEE---
T ss_pred             hcCCCEEEeCCC
Confidence            368999999998

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.95  E-value=0.0012  Score=46.76  Aligned_cols=119  Identities=19%  Similarity=0.233  Sum_probs=53.8

Q ss_pred             cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHH---HcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcE
Q psy5757          11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISE---LMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHI   87 (139)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~---~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i   87 (139)
                      ..|.-+..+.+.+-+ ++ ...|+|+|.-.|+-..+.|.   ..+.+++|+++|++........... ...     .+++
T Consensus        16 q~P~Dm~~~qeli~~-~k-Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~-----~~rI   87 (206)
T PF04989_consen   16 QYPQDMVAYQELIWE-LK-PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPM-----SPRI   87 (206)
T ss_dssp             S-HHHHHHHHHHHHH-H---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTE
T ss_pred             cCHHHHHHHHHHHHH-hC-CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccc-----cCce
Confidence            344434455555532 34 47999999999887776665   3346789999999743332211110 011     3789


Q ss_pred             EEEEccchhhhHHH---hhhccCCceeEEecCccccccccc--eeeeeeeccCCCCC
Q psy5757          88 KFVALGMIKRIETV---ELMMKFDRYDFLPHAPAESWMNIP--VCINYTATMPEGSY  139 (139)
Q Consensus        88 ~~~~~d~~~~~~~~---~~~~~~~~~D~vi~~~~~~~~~~p--~~~~~~~~~p~g~~  139 (139)
                      +++.||..+ .+.+   ..........+|+......+..-.  ... |..++..|+|
T Consensus        88 ~~i~Gds~d-~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~-y~plv~~G~Y  142 (206)
T PF04989_consen   88 TFIQGDSID-PEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEA-YAPLVSPGSY  142 (206)
T ss_dssp             EEEES-SSS-THHHHTSGSS----SSEEEEESS----SSHHHHHHH-HHHT--TT-E
T ss_pred             EEEECCCCC-HHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHH-hCccCCCCCE
Confidence            999999776 3222   112122344677776652222211  111 6666666665

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.92  E-value=0.0026  Score=45.34  Aligned_cols=46  Identities=17%  Similarity=0.228  Sum_probs=35.0

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHH
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNIL   75 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~   75 (139)
                      .-.++|.+||+|++.-.+...-.. -..+++.|+++.+++.|++|+.
T Consensus        52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            348999999999987777664422 2489999999999999999983

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.83  E-value=0.0042  Score=44.85  Aligned_cols=100  Identities=17%  Similarity=0.157  Sum_probs=58.3

Q ss_pred             HHHHHHHHhccc---C-CCCCeEEEEcccCCh-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh--hccccccCCcE
Q psy5757          15 AILTYLSIIQPH---L-NENSKVLEIGSGSGY-LTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH--SNARLLTDGHI   87 (139)
Q Consensus        15 ~~~~~~~~l~~~---~-~~~~~iLdiG~G~G~-~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~i   87 (139)
                      .++++.++|..-   + .++-++||||.|.-- ..+-=...++  =+.+|.|+|+..++.|+..+..  ++     ...+
T Consensus        60 Yih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYg--wrfvGseid~~sl~sA~~ii~~N~~l-----~~~I  132 (292)
T COG3129          60 YIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYG--WRFVGSEIDSQSLSSAKAIISANPGL-----ERAI  132 (292)
T ss_pred             HHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeec--ceeecCccCHHHHHHHHHHHHcCcch-----hhhe
Confidence            366777777521   2 245588999877432 1111111222  2789999999999999998876  22     2334


Q ss_pred             EEEEc-cchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757          88 KFVAL-GMIKRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        88 ~~~~~-d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                      .+..- |-...++-+  ....+.||++.|||+||--.
T Consensus       133 ~lr~qk~~~~if~gi--ig~nE~yd~tlCNPPFh~s~  167 (292)
T COG3129         133 RLRRQKDSDAIFNGI--IGKNERYDATLCNPPFHDSA  167 (292)
T ss_pred             eEEeccCcccccccc--ccccceeeeEecCCCcchhH
Confidence            44332 211111111  12346899999999999643

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.82  E-value=0.01  Score=42.04  Aligned_cols=80  Identities=20%  Similarity=0.312  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ++++.+||=+|+.+|.+..-++.-.+ ++.++++|.++......-....+       -+|+--+.+|+.. .+.+..-  
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~-------R~Ni~PIL~DA~~-P~~Y~~~--  142 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK-------RPNIIPILEDARK-PEKYRHL--  142 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh-------CCCceeeecccCC-cHHhhhh--
Confidence            57899999999999999999999886 78999999999887776665554       2577777888765 2222111  


Q ss_pred             CCceeEEecCc
Q psy5757         107 FDRYDFLPHAP  117 (139)
Q Consensus       107 ~~~~D~vi~~~  117 (139)
                      .+.+|+++..-
T Consensus       143 Ve~VDviy~DV  153 (231)
T COG1889         143 VEKVDVIYQDV  153 (231)
T ss_pred             cccccEEEEec
Confidence            24578886554

>PHA01634 hypothetical protein

Probab=96.74  E-value=0.0057  Score=40.18  Aligned_cols=47  Identities=13%  Similarity=-0.031  Sum_probs=42.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      ..+++|+|+|++-|..+.+++.+...  .|+++|.++...+..+++.+.
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHHhhh
Confidence            46789999999999999999998865  999999999999999998876

>KOG1122|consensus

Probab=96.73  E-value=0.0063  Score=47.28  Aligned_cols=81  Identities=14%  Similarity=0.158  Sum_probs=65.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +++.+|||.++-.|+-+..+|..++..+.+++.|.+.+.+...+.++.+ +.      .+..+...|..+ ++.  ...+
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~e-f~~--~~~~  310 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGRE-FPE--KEFP  310 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCccc-ccc--cccC
Confidence            7899999999999999999999998889999999999999999999998 65      787788888664 321  1112


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                       .+||-|....+
T Consensus       311 -~~fDRVLLDAP  321 (460)
T KOG1122|consen  311 -GSFDRVLLDAP  321 (460)
T ss_pred             -cccceeeecCC
Confidence             27888876655

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.70  E-value=0.0049  Score=45.56  Aligned_cols=72  Identities=14%  Similarity=0.045  Sum_probs=50.9

Q ss_pred             eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCcee
Q psy5757          32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYD  111 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  111 (139)
                      +++|+.||.|+.+..+....-.  .+.++|+++.+++..+.+...          . .+.+|+.+ +.   .......+|
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~----------~-~~~~Di~~-~~---~~~~~~~~D   64 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPN----------K-LIEGDITK-ID---EKDFIPDID   64 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCC----------C-CccCcccc-Cc---hhhcCCCCC
Confidence            6899999999999988876532  788999999998887777533          1 45566544 21   111024589


Q ss_pred             EEecCcccc
Q psy5757         112 FLPHAPAES  120 (139)
Q Consensus       112 ~vi~~~~~~  120 (139)
                      +++..++.+
T Consensus        65 ~l~~gpPCq   73 (275)
T cd00315          65 LLTGGFPCQ   73 (275)
T ss_pred             EEEeCCCCh
Confidence            999988744

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.44  E-value=0.0026  Score=44.71  Aligned_cols=101  Identities=17%  Similarity=0.249  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH------HHHhhccccccCCcEEEEEccchhhhHH
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ------NILHSNARLLTDGHIKFVALGMIKRIET  100 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~------~~~~~~~~~~~~~~i~~~~~d~~~~~~~  100 (139)
                      +++++.|+|+-.|.|++++-++...++++.|+++-..+...-..+.      ..+...     ..|.+.+-.+.    ..
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-----~aN~e~~~~~~----~A  116 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-----YANVEVIGKPL----VA  116 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-----hhhhhhhCCcc----cc
Confidence            4789999999999999999999999999999988655331111110      011111     13333332221    11


Q ss_pred             HhhhccCCceeEEecCcccccccc----------ceeeeeeeccCCCCC
Q psy5757         101 VELMMKFDRYDFLPHAPAESWMNI----------PVCINYTATMPEGSY  139 (139)
Q Consensus       101 ~~~~~~~~~~D~vi~~~~~~~~~~----------p~~~~~~~~~p~g~~  139 (139)
                      +  . ..+..|+++.+...|-|..          .....+..++|+|+|
T Consensus       117 ~--~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~  162 (238)
T COG4798         117 L--G-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVY  162 (238)
T ss_pred             c--C-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEE
Confidence            1  1 3455677777666554432          234558899999986

>KOG1331|consensus

Probab=96.34  E-value=0.00097  Score=49.20  Aligned_cols=90  Identities=17%  Similarity=0.213  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ...+..++|+|||.|..+.     ..|.+..++.|.+...+..+++.           .......+|+++      .+..
T Consensus        43 ~~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~-----------~~~~~~~ad~l~------~p~~  100 (293)
T KOG1331|consen   43 QPTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS-----------GGDNVCRADALK------LPFR  100 (293)
T ss_pred             cCCcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC-----------CCceeehhhhhc------CCCC
Confidence            3457789999999996332     12566899999998777766542           111466677655      2334


Q ss_pred             CCceeEEecCccccccccce------eeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPV------CINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~------~~~~~~~~p~g~  138 (139)
                      ..+||.+++-.+.||+..-.      ....+.+.|+|.
T Consensus       101 ~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~  138 (293)
T KOG1331|consen  101 EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGN  138 (293)
T ss_pred             CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCc
Confidence            67899999999999987543      333566677664

>KOG1099|consensus

Probab=96.09  E-value=0.0077  Score=43.46  Aligned_cols=96  Identities=13%  Similarity=0.215  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCC----Cc----eEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--h
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNS----TG----QVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--R   97 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~----~~----~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~   97 (139)
                      ..-++++|+++..|+++..+++++-.    ..    .++++|+++         +. .      -+.+..+++|+++  .
T Consensus        40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~---------Ma-P------I~GV~qlq~DIT~~st  103 (294)
T KOG1099|consen   40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP---------MA-P------IEGVIQLQGDITSAST  103 (294)
T ss_pred             hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc---------CC-c------cCceEEeecccCCHhH
Confidence            34468999999999999999998732    11    389999885         11 1      2677888899876  2


Q ss_pred             hHHHhhhccCCceeEEecCcc-----cccccc---------ceeeeeeeccCCCCC
Q psy5757          98 IETVELMMKFDRYDFLPHAPA-----ESWMNI---------PVCINYTATMPEGSY  139 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~-----~~~~~~---------p~~~~~~~~~p~g~~  139 (139)
                      .+.+-.....++.|+|+|..+     +|-+..         ...+.-..++|+|+|
T Consensus       104 ae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~F  159 (294)
T KOG1099|consen  104 AEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSF  159 (294)
T ss_pred             HHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCee
Confidence            233333344567999999887     666554         245556778888875

>KOG2651|consensus

Probab=96.04  E-value=0.028  Score=43.42  Aligned_cols=44  Identities=25%  Similarity=0.353  Sum_probs=37.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      .+-..++|+|+|.|+++.+++-.++-  .|.+||-|....+.|++.
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y~l--sV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGYGL--SVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhccCc--eEEEeccchHHHHHHHHH
Confidence            45678999999999999999999875  999999997776666543

>KOG4058|consensus

Probab=96.02  E-value=0.024  Score=38.28  Aligned_cols=57  Identities=25%  Similarity=0.343  Sum_probs=43.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      +...+.++.  -.+..+.+|+|+|.|....+.++..-.  ..+|+|.+|-.+..++-...+
T Consensus        61 v~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g~~--~a~GvELNpwLVaysrl~a~R  117 (199)
T KOG4058|consen   61 VENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCGLR--PAVGVELNPWLVAYSRLHAWR  117 (199)
T ss_pred             HHHHHHHcc--CCCCCcEEeccCCCceeehhhhhhCCC--cCCceeccHHHHHHHHHHHHH
Confidence            444444443  244468999999999999999998732  789999999998888766654

>KOG2352|consensus

Probab=95.98  E-value=0.031  Score=44.22  Aligned_cols=85  Identities=13%  Similarity=0.209  Sum_probs=63.1

Q ss_pred             CCCCC-eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENS-KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~-~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..+.. +++-+|||.-.++..+-+.+..  .++.+|+|+..++.....-...      .+...+...|+..    +  ..
T Consensus        45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~------~~~~~~~~~d~~~----l--~f  110 (482)
T KOG2352|consen   45 LSPSDFKILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKE------RPEMQMVEMDMDQ----L--VF  110 (482)
T ss_pred             hchhhceeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccC------CcceEEEEecchh----c--cC
Confidence            34445 8999999999999999888765  8999999998888876654332      2567788888544    2  23


Q ss_pred             cCCceeEEecCccccccccc
Q psy5757         106 KFDRYDFLPHAPAESWMNIP  125 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p  125 (139)
                      +.++||+|+.-..++....+
T Consensus       111 edESFdiVIdkGtlDal~~d  130 (482)
T KOG2352|consen  111 EDESFDIVIDKGTLDALFED  130 (482)
T ss_pred             CCcceeEEEecCccccccCC
Confidence            46789999988887765543

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.98  E-value=0.013  Score=37.22  Aligned_cols=45  Identities=13%  Similarity=0.238  Sum_probs=32.6

Q ss_pred             HHHHHHHhcccCC--CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCC
Q psy5757          16 ILTYLSIIQPHLN--ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHV   63 (139)
Q Consensus        16 ~~~~~~~l~~~~~--~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~   63 (139)
                      .++++........  +....+|+|||+|-+.--|....-   .-.|+|.-
T Consensus        43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy---~G~GiD~R   89 (112)
T PF07757_consen   43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY---PGWGIDAR   89 (112)
T ss_pred             HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC---Cccccccc
Confidence            4455555554332  456799999999999988888775   67888865

; GO: 0008168 methyltransferase activity

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=95.95  E-value=0.048  Score=43.68  Aligned_cols=108  Identities=14%  Similarity=0.100  Sum_probs=68.3

Q ss_pred             hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcC---CCceEEEEeCCHHHHHHHHHHHHh-hcccc
Q psy5757           6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMN---STGQVIGIEHVPQLVNSSIQNILH-SNARL   81 (139)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~---~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~   81 (139)
                      -|..+.+.+++..+.+.+.+...++..+.|..||+|.+.....+...   ...++++.|..+.+...++.++.. +.   
T Consensus       194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~---  270 (501)
T TIGR00497       194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI---  270 (501)
T ss_pred             CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC---
Confidence            35566777777777776654334667899999999998876554331   124689999999999999988654 22   


Q ss_pred             ccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757          82 LTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        82 ~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                       ..+......+|-...+.    .....++|++++||++..
T Consensus       271 -~~~t~~~~~~dtl~~~d----~~~~~~~D~v~~NpPf~~  305 (501)
T TIGR00497       271 -DYANFNIINADTLTTKE----WENENGFEVVVSNPPYSI  305 (501)
T ss_pred             -CccccCcccCCcCCCcc----ccccccCCEEeecCCccc
Confidence             01122233344222111    001245899999998643

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>KOG2671|consensus

Probab=95.93  E-value=0.013  Score=44.64  Aligned_cols=82  Identities=13%  Similarity=0.151  Sum_probs=60.0

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHH-------HHHHHHh-hccccccCCcEEEEEccchh-
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNS-------SIQNILH-SNARLLTDGHIKFVALGMIK-   96 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~-------a~~~~~~-~~~~~~~~~~i~~~~~d~~~-   96 (139)
                      ++++|.-|.|--.|||++....+..+.   .|+|.||+-.++..       .+.+++. +.    ...-+.+..+|..+ 
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa~FGa---~viGtDIDyr~vragrg~~~si~aNFkQYg~----~~~fldvl~~D~sn~  277 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAAHFGA---YVIGTDIDYRTVRAGRGEDESIKANFKQYGS----SSQFLDVLTADFSNP  277 (421)
T ss_pred             ccCCCCEEecCccccCceeeehhhhcc---eeeccccchheeecccCCCcchhHhHHHhCC----cchhhheeeecccCc
Confidence            468999999999999999999999876   99999999777662       2444544 32    12335777888665 


Q ss_pred             hhHHHhhhccCCceeEEecCcccc
Q psy5757          97 RIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        97 ~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      .+.      ....||+|++.|+..
T Consensus       278 ~~r------sn~~fDaIvcDPPYG  295 (421)
T KOG2671|consen  278 PLR------SNLKFDAIVCDPPYG  295 (421)
T ss_pred             chh------hcceeeEEEeCCCcc
Confidence            222      134699999999854

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=95.89  E-value=0.065  Score=41.53  Aligned_cols=79  Identities=15%  Similarity=0.182  Sum_probs=54.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCC-cEEEEEccchhhhHHHhhhcc
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDG-HIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .+.++||.=+|+|--+...+...+...+|+.-|+|+++++..++|+.. ++     .. ++++.+.|+...+.     ..
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~-----~~~~~~v~~~DAn~ll~-----~~  118 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL-----EDERIEVSNMDANVLLY-----SR  118 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT------SGCCEEEEES-HHHHHC-----HS
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc-----cCceEEEehhhHHHHhh-----hc
Confidence            345899999999999999999853334999999999999999999988 54     23 58888888655332     12


Q ss_pred             CCceeEEecCc
Q psy5757         107 FDRYDFLPHAP  117 (139)
Q Consensus       107 ~~~~D~vi~~~  117 (139)
                      ...||+|=..|
T Consensus       119 ~~~fD~IDlDP  129 (377)
T PF02005_consen  119 QERFDVIDLDP  129 (377)
T ss_dssp             TT-EEEEEE--
T ss_pred             cccCCEEEeCC
Confidence            45688884444

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.81  E-value=0.037  Score=41.20  Aligned_cols=71  Identities=18%  Similarity=0.165  Sum_probs=48.8

Q ss_pred             eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCcee
Q psy5757          32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYD  111 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  111 (139)
                      +++|+.||-|+++..+-+..-.  .+.++|+++.+.+.-+.+.          +  ....+|+.+.-.. ..+  . .+|
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~--~~~a~e~~~~a~~~y~~N~----------~--~~~~~Di~~~~~~-~l~--~-~~D   63 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFE--VVWAVEIDPDACETYKANF----------P--EVICGDITEIDPS-DLP--K-DVD   63 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEE--EEEEEESSHHHHHHHHHHH----------T--EEEESHGGGCHHH-HHH--H-T-S
T ss_pred             cEEEEccCccHHHHHHHhcCcE--EEEEeecCHHHHHhhhhcc----------c--ccccccccccccc-ccc--c-cce
Confidence            6899999999999999888732  7899999999777766664          3  6778887762221 111  1 489


Q ss_pred             EEecCcccc
Q psy5757         112 FLPHAPAES  120 (139)
Q Consensus       112 ~vi~~~~~~  120 (139)
                      +++..++.+
T Consensus        64 ~l~ggpPCQ   72 (335)
T PF00145_consen   64 LLIGGPPCQ   72 (335)
T ss_dssp             EEEEE---T
T ss_pred             EEEeccCCc
Confidence            999888733

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG1227|consensus

Probab=95.72  E-value=0.0038  Score=46.58  Aligned_cols=48  Identities=19%  Similarity=0.233  Sum_probs=41.4

Q ss_pred             CCCCCeEEEEcccCChhHH-HHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          27 LNENSKVLEIGSGSGYLTN-MISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~-~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      ...+..|+|+-+|-|+++. .+......  .|+++|.+|..++..+++++.
T Consensus       192 sc~~eviVDLYAGIGYFTlpflV~agAk--~V~A~EwNp~svEaLrR~~~~  240 (351)
T KOG1227|consen  192 SCDGEVIVDLYAGIGYFTLPFLVTAGAK--TVFACEWNPWSVEALRRNAEA  240 (351)
T ss_pred             ccccchhhhhhcccceEEeehhhccCcc--EEEEEecCHHHHHHHHHHHHh
Confidence            3566899999999999999 66666643  999999999999999999877

>KOG0822|consensus

Probab=95.58  E-value=0.06  Score=43.29  Aligned_cols=77  Identities=14%  Similarity=0.242  Sum_probs=55.8

Q ss_pred             CeEEEEcccCChhHHHH---HHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          31 SKVLEIGSGSGYLTNMI---SELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l---~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ..|.-+|+|.|-+....   ++....+.+++++|.+|.++...+.+--..+     ..+++++..|+.+ |.     ++.
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-----~~~Vtii~~DMR~-w~-----ap~  437 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-----DNRVTIISSDMRK-WN-----APR  437 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-----cCeeEEEeccccc-cC-----Cch
Confidence            36789999999765544   4444456689999999999988877433344     4789999999887 32     235


Q ss_pred             CceeEEecCcc
Q psy5757         108 DRYDFLPHAPA  118 (139)
Q Consensus       108 ~~~D~vi~~~~  118 (139)
                      .+.|+++|-..
T Consensus       438 eq~DI~VSELL  448 (649)
T KOG0822|consen  438 EQADIIVSELL  448 (649)
T ss_pred             hhccchHHHhh
Confidence            67899877554

>KOG2352|consensus

Probab=95.54  E-value=0.012  Score=46.50  Aligned_cols=81  Identities=16%  Similarity=0.134  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh-c
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM-M  105 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~  105 (139)
                      ..+..+|-+|-|+|.+...+....+ ..+++++|++|++++.|+..+.. ..      .+..+...|+.+.+.+.... .
T Consensus       294 ~~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~------~r~~V~i~dGl~~~~~~~k~~~  366 (482)
T KOG2352|consen  294 DTGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS------DRNKVHIADGLDFLQRTAKSQQ  366 (482)
T ss_pred             cccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh------hhhhhhHhhchHHHHHHhhccc
Confidence            4556788899999999999999884 66999999999999999998876 32      45566667777655544332 2


Q ss_pred             cCCceeEEec
Q psy5757         106 KFDRYDFLPH  115 (139)
Q Consensus       106 ~~~~~D~vi~  115 (139)
                      ...+||++..
T Consensus       367 ~~~~~dvl~~  376 (482)
T KOG2352|consen  367 EDICPDVLMV  376 (482)
T ss_pred             cccCCcEEEE
Confidence            3347999854

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.26  E-value=0.059  Score=39.24  Aligned_cols=46  Identities=22%  Similarity=0.304  Sum_probs=36.3

Q ss_pred             CeEEEEcccCChhHHHHHHHcCC-------CceEEEEeCCHHHHHHHHHHHHh
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNS-------TGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~-------~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      -+|+|+|+|+|.++.-+++.+..       ..+++-+|+|+.+.+.-++.+..
T Consensus        20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            58999999999999999887752       25899999999888777777654

; PDB: 4F3N_A 1ZKD_B.

>KOG2198|consensus

Probab=94.95  E-value=0.11  Score=39.93  Aligned_cols=64  Identities=17%  Similarity=0.263  Sum_probs=50.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCC---CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNS---TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~---~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ++++.+|||.++..|+-+..+.+..-+   ++.|++-|.++.-+......+.+     +..+++.+...|+.
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~-----l~~~~~~v~~~~~~  219 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR-----LPSPNLLVTNHDAS  219 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc-----cCCcceeeecccce
Confidence            689999999999999999999988732   34899999999988888888866     22356555555544

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.87  E-value=0.13  Score=32.39  Aligned_cols=66  Identities=17%  Similarity=0.208  Sum_probs=44.1

Q ss_pred             ccCChhHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecC
Q psy5757          38 SGSGYLTNMISELMNSTG-QVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHA  116 (139)
Q Consensus        38 ~G~G~~~~~l~~~~~~~~-~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~  116 (139)
                      ||.|..+..+++.+.... .++.+|.+++.++.+++.            .+.++.+|..+ ...+ ..+...+.+.+++.
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------------~~~~i~gd~~~-~~~l-~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------------GVEVIYGDATD-PEVL-ERAGIEKADAVVIL   69 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------------TSEEEES-TTS-HHHH-HHTTGGCESEEEEE
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------------ccccccccchh-hhHH-hhcCccccCEEEEc
Confidence            677889999988885555 799999999887776553            36688899876 2222 23344567766655


Q ss_pred             c
Q psy5757         117 P  117 (139)
Q Consensus       117 ~  117 (139)
                      .
T Consensus        70 ~   70 (116)
T PF02254_consen   70 T   70 (116)
T ss_dssp             S
T ss_pred             c
Confidence            4

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.73  E-value=0.18  Score=38.21  Aligned_cols=77  Identities=19%  Similarity=0.089  Sum_probs=52.4

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      ..+++|+.||-|++...+-...-.  -+.++|+++.+++.-+.+..          ...++..|+.+...   .....-.
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~--~~~a~Eid~~a~~ty~~n~~----------~~~~~~~di~~~~~---~~~~~~~   67 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFE--IVFANEIDPPAVATYKANFP----------HGDIILGDIKELDG---EALRKSD   67 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCe--EEEEEecCHHHHHHHHHhCC----------CCceeechHhhcCh---hhccccC
Confidence            357999999999999888887632  78899999988887766653          23455566443111   0101116


Q ss_pred             eeEEecCccccc
Q psy5757         110 YDFLPHAPAESW  121 (139)
Q Consensus       110 ~D~vi~~~~~~~  121 (139)
                      +|+++..++.+-
T Consensus        68 ~DvligGpPCQ~   79 (328)
T COG0270          68 VDVLIGGPPCQD   79 (328)
T ss_pred             CCEEEeCCCCcc
Confidence            899999988543

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.67  E-value=0.26  Score=38.01  Aligned_cols=74  Identities=12%  Similarity=0.125  Sum_probs=57.0

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      ..+|+|.=+|||.-+...+...+.. +++.-|+||.+++..++|...+.     ..+...+..|....+++.     ...
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~-----~~~~~v~n~DAN~lm~~~-----~~~  121 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNS-----GEDAEVINKDANALLHEL-----HRA  121 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcC-----cccceeecchHHHHHHhc-----CCC
Confidence            6789999999999999999988644 89999999999999999998831     256666667765544421     245


Q ss_pred             eeEEe
Q psy5757         110 YDFLP  114 (139)
Q Consensus       110 ~D~vi  114 (139)
                      ||+|=
T Consensus       122 fd~ID  126 (380)
T COG1867         122 FDVID  126 (380)
T ss_pred             ccEEe
Confidence            67763

>PTZ00357 methyltransferase; Provisional

Probab=94.59  E-value=0.16  Score=42.44  Aligned_cols=87  Identities=10%  Similarity=0.090  Sum_probs=52.0

Q ss_pred             eEEEEcccCChhHHHHHH---HcCCCceEEEEeCCHHHHHHHHHHHHh--hccc--cccCCcEEEEEccchhhhHH----
Q psy5757          32 KVLEIGSGSGYLTNMISE---LMNSTGQVIGIEHVPQLVNSSIQNILH--SNAR--LLTDGHIKFVALGMIKRIET----  100 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~---~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~--~~~~~~i~~~~~d~~~~~~~----  100 (139)
                      .|+-+|+|.|-+.....+   ..+.+.+++++|.++........+...  .+..  ..-..+++++..|+.++-..    
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            589999999976555544   334566899999997755554444321  1100  00124689999998873211    


Q ss_pred             -HhhhccCCceeEEecCcc
Q psy5757         101 -VELMMKFDRYDFLPHAPA  118 (139)
Q Consensus       101 -~~~~~~~~~~D~vi~~~~  118 (139)
                       ...+...+++|++||=..
T Consensus       783 s~~~P~~~gKaDIVVSELL  801 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELL  801 (1072)
T ss_pred             cccccccccccceehHhhh
Confidence             001112347999988543

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=94.59  E-value=0.12  Score=39.09  Aligned_cols=70  Identities=14%  Similarity=0.063  Sum_probs=48.0

Q ss_pred             EEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCceeE
Q psy5757          33 VLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDF  112 (139)
Q Consensus        33 iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~  112 (139)
                      ++|+.||-|+++..+-+..-.  .+.++|+++.+.+.-+.+.          ++ .++.+|+.+    +... ....+|+
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~--~~~a~e~~~~a~~ty~~N~----------~~-~~~~~Di~~----~~~~-~~~~~dv   62 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFK--CVFASEIDKYAQKTYEANF----------GN-KVPFGDITK----ISPS-DIPDFDI   62 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCe--EEEEEeCCHHHHHHHHHhC----------CC-CCCccChhh----hhhh-hCCCcCE
Confidence            589999999999999876631  5678999998888777664          22 345567444    2111 1234899


Q ss_pred             EecCcccc
Q psy5757         113 LPHAPAES  120 (139)
Q Consensus       113 vi~~~~~~  120 (139)
                      ++..++.+
T Consensus        63 l~gg~PCq   70 (315)
T TIGR00675        63 LLGGFPCQ   70 (315)
T ss_pred             EEecCCCc
Confidence            98887743

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=94.24  E-value=0.28  Score=37.43  Aligned_cols=90  Identities=12%  Similarity=0.095  Sum_probs=42.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc---------------CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCc--EEE
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM---------------NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGH--IKF   89 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~---------------~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~--i~~   89 (139)
                      .+.-+|+|+||.+|..+..++...               .|+-+|+--|.-.+=....=+.+.. ... .....+  +.-
T Consensus        15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~-~~~~~~~f~~g   93 (334)
T PF03492_consen   15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQS-LKKFRNYFVSG   93 (334)
T ss_dssp             TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHH-HHHTTSEEEEE
T ss_pred             CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhc-cCCCceEEEEe
Confidence            455689999999999888775433               1123667777432222221111111 000 000022  233


Q ss_pred             EEccchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757          90 VALGMIKRIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                      +.+++.+   ++   .|..++|+++|..++||+..
T Consensus        94 vpgSFy~---rL---fP~~Svh~~~Ss~alHWLS~  122 (334)
T PF03492_consen   94 VPGSFYG---RL---FPSNSVHFGHSSYALHWLSQ  122 (334)
T ss_dssp             EES-TTS--------S-TT-EEEEEEES-TTB-SS
T ss_pred             cCchhhh---cc---CCCCceEEEEEechhhhccc
Confidence            4455432   22   35678999999999999876

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=94.22  E-value=0.3  Score=37.54  Aligned_cols=68  Identities=22%  Similarity=0.211  Sum_probs=46.3

Q ss_pred             cccChHHHH--------HHHHHhcccCC-CCCeEEEEcccCChhHHHHHHHc---CC----CceEEEEeCCHHHHHHHHH
Q psy5757           9 AIGGISAIL--------TYLSIIQPHLN-ENSKVLEIGSGSGYLTNMISELM---NS----TGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus         9 ~~~~~~~~~--------~~~~~l~~~~~-~~~~iLdiG~G~G~~~~~l~~~~---~~----~~~v~~~d~~~~~~~~a~~   72 (139)
                      ++++|++-.        ++++.+..... ..-.++|+|+|+|.+..-+.+..   .|    ..++.-+|+|++..+.=++
T Consensus        48 FiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~  127 (370)
T COG1565          48 FITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKE  127 (370)
T ss_pred             eeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHH
Confidence            566776533        33333332223 34579999999999988887765   22    4689999999988777666


Q ss_pred             HHHh
Q psy5757          73 NILH   76 (139)
Q Consensus        73 ~~~~   76 (139)
                      +++.
T Consensus       128 ~L~~  131 (370)
T COG1565         128 TLKA  131 (370)
T ss_pred             HHhc
Confidence            6655

>KOG0024|consensus

Probab=94.16  E-value=0.35  Score=36.76  Aligned_cols=66  Identities=24%  Similarity=0.314  Sum_probs=47.6

Q ss_pred             cccccChHHHHHHHHHhcccCCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757           7 GAAIGGISAILTYLSIIQPHLNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus         7 ~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      |+.+.+.+.--+...+-  .++.+.++|-+|+| .|-.+...++.++ -.+|+..|++++.++.|++ +..
T Consensus       149 GAl~ePLsV~~HAcr~~--~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~Ga  215 (354)
T KOG0024|consen  149 GALIEPLSVGVHACRRA--GVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-FGA  215 (354)
T ss_pred             cccccchhhhhhhhhhc--CcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-hCC
Confidence            44444444333333333  27889999999999 5777777888886 4599999999999999998 544

>KOG2078|consensus

Probab=93.91  E-value=0.072  Score=41.75  Aligned_cols=72  Identities=11%  Similarity=0.069  Sum_probs=56.2

Q ss_pred             HHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh
Q psy5757          19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        19 ~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~   96 (139)
                      ..+.+...+++|..|.|+.||-|-+...++...   +.|++.|.+++++++.+.+++.+-   +...++.+...|+.+
T Consensus       239 Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNk---v~~~~iei~Nmda~~  310 (495)
T KOG2078|consen  239 EHERLSGLFKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLNK---VDPSAIEIFNMDAKD  310 (495)
T ss_pred             HHHHHhhccCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhccccc---cchhheeeecccHHH
Confidence            344454457899999999999999999999987   399999999999999999998722   222336666666554

>PRK10458 DNA cytosine methylase; Provisional

Probab=93.82  E-value=0.31  Score=38.91  Aligned_cols=43  Identities=14%  Similarity=0.110  Sum_probs=34.7

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI   74 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~   74 (139)
                      ..+++|+.||-|+++..+-.....  .+.++|+++.+.+.-+.++
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~--~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQ--CVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCE--EEEEEechHHHHHHHHHHc
Confidence            458999999999999999776542  6789999988777666664

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=93.79  E-value=0.2  Score=33.30  Aligned_cols=39  Identities=23%  Similarity=0.276  Sum_probs=26.5

Q ss_pred             EEcccCC--hhHHHHHH-HcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          35 EIGSGSG--YLTNMISE-LMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        35 diG~G~G--~~~~~l~~-~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      |+|+..|  ..+..++. ...+.++++++|.+|..++..+++
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  66666553 344567999999999999999888

; PDB: 2PY6_A.

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=93.49  E-value=0.41  Score=35.86  Aligned_cols=83  Identities=11%  Similarity=0.088  Sum_probs=46.8

Q ss_pred             EcccCChhHHHHHHHcCC--CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEE----EEEccchhhhHHHhhhccCCc
Q psy5757          36 IGSGSGYLTNMISELMNS--TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIK----FVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        36 iG~G~G~~~~~l~~~~~~--~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~----~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      +..|+|+.+..+.+..-.  ..+++.+|.++..+-..++.+....    ..+++.    .+.+|+.+ .+.+..-...-.
T Consensus         3 VTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~----~~~~v~~~~~~vigDvrd-~~~l~~~~~~~~   77 (293)
T PF02719_consen    3 VTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF----PDPKVRFEIVPVIGDVRD-KERLNRIFEEYK   77 (293)
T ss_dssp             EETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC------TTCEEEEE--CTSCCH-HHHHHHHTT--T
T ss_pred             EEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc----cccCcccccCceeecccC-HHHHHHHHhhcC
Confidence            345789999988887621  1489999999999988888875311    123343    45889887 333322222336


Q ss_pred             eeEEecCccccccc
Q psy5757         110 YDFLPHAPAESWMN  123 (139)
Q Consensus       110 ~D~vi~~~~~~~~~  123 (139)
                      .|+|++..++.|++
T Consensus        78 pdiVfHaAA~KhVp   91 (293)
T PF02719_consen   78 PDIVFHAAALKHVP   91 (293)
T ss_dssp             -SEEEE------HH
T ss_pred             CCEEEEChhcCCCC
Confidence            89999999987765

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=93.28  E-value=0.35  Score=37.64  Aligned_cols=19  Identities=16%  Similarity=0.249  Sum_probs=16.7

Q ss_pred             cCCceeEEecCcccccccc
Q psy5757         106 KFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~  124 (139)
                      |..++++++|..++||+..
T Consensus       159 P~~Slh~~~Ss~slHWLS~  177 (386)
T PLN02668        159 PARSIDVFHSAFSLHWLSQ  177 (386)
T ss_pred             CCCceEEEEeeccceeccc
Confidence            5678999999999999875

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=93.26  E-value=0.3  Score=35.97  Aligned_cols=38  Identities=26%  Similarity=0.506  Sum_probs=31.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcC----CCceEEEEeCCH
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMN----STGQVIGIEHVP   64 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~----~~~~v~~~d~~~   64 (139)
                      +.++..++|+|||.|.++.+++....    +...++.+|-..
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~   57 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS   57 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence            46777999999999999999999883    245888999754

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=93.17  E-value=0.57  Score=34.53  Aligned_cols=56  Identities=23%  Similarity=0.245  Sum_probs=45.6

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      .+...+...-.++..|+|.-+|+|.++........   ..+++|++++.++.+.+++..
T Consensus       211 l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r---~~ig~e~~~~y~~~~~~r~~~  266 (302)
T COG0863         211 LIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGR---RFIGIEINPEYVEVALKRLQE  266 (302)
T ss_pred             HHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCC---ceEEEecCHHHHHHHHHHHHh
Confidence            33333333347889999999999998888877765   899999999999999999886

>KOG1562|consensus

Probab=93.17  E-value=0.4  Score=36.06  Aligned_cols=85  Identities=18%  Similarity=0.201  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..+.+.++-+|-|.|...+..+++- .-.++.-+|++...++..++.+.. ...  +..+++.+..||....++++    
T Consensus       119 ~~npkkvlVVgggDggvlrevikH~-~ve~i~~~eiD~~Vie~sk~y~p~la~g--y~~~~v~l~iGDG~~fl~~~----  191 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKHK-SVENILLCEIDENVIESSKQYLPTLACG--YEGKKVKLLIGDGFLFLEDL----  191 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeeccc-cccceeeehhhHHHHHHHHHHhHHHhcc--cCCCceEEEeccHHHHHHHh----
Confidence            3556789999999999999999983 445889999999999988888765 211  45678999999976644432    


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      +.++||+|+...+
T Consensus       192 ~~~~~dVii~dss  204 (337)
T KOG1562|consen  192 KENPFDVIITDSS  204 (337)
T ss_pred             ccCCceEEEEecC
Confidence            3567999987764

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=93.14  E-value=0.43  Score=35.34  Aligned_cols=43  Identities=30%  Similarity=0.224  Sum_probs=36.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI   74 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~   74 (139)
                      ...+||-.|||.|.++..++.+.-   .+.|.|.|-.|+-...-.+
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiL   98 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFIL   98 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHH
Confidence            346899999999999999999975   8999999998876555443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG2920|consensus

Probab=92.80  E-value=0.19  Score=37.36  Aligned_cols=50  Identities=14%  Similarity=0.046  Sum_probs=36.9

Q ss_pred             HHHHHHHh-cccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHH
Q psy5757          16 ILTYLSII-QPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLV   67 (139)
Q Consensus        16 ~~~~~~~l-~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~   67 (139)
                      ...+.+.+ ......+++|||+|||+|-.+.........  .+...|.+...+
T Consensus       102 ~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~--~~~fqD~na~vl  152 (282)
T KOG2920|consen  102 LPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAV--SVHFQDFNAEVL  152 (282)
T ss_pred             HHHHHHHhhhheEecCceeEecCCcccccchhhhhhccc--eeeeEecchhhe
Confidence            44444444 334578899999999999999888887742  788888886665

>KOG2912|consensus

Probab=92.71  E-value=0.54  Score=35.80  Aligned_cols=82  Identities=18%  Similarity=0.122  Sum_probs=51.0

Q ss_pred             EEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhH-HHhhhccCCcee
Q psy5757          34 LEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIE-TVELMMKFDRYD  111 (139)
Q Consensus        34 LdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~~~~D  111 (139)
                      +|||+|.-..--.+-.+.. .=..+++|++.-....|..+... ++     .+.+.+++.+..+..- +.....+...||
T Consensus       107 iDIgtgasci~~llg~rq~-n~~f~~teidd~s~~~a~snV~qn~l-----ss~ikvV~~~~~ktll~d~~~~~~e~~yd  180 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQN-NWYFLATEIDDMSFNYAKSNVEQNNL-----SSLIKVVKVEPQKTLLMDALKEESEIIYD  180 (419)
T ss_pred             eeccCchhhhHHhhhchhc-cceeeeeeccccccchhhcccccccc-----ccceeeEEecchhhcchhhhccCccceee
Confidence            6887765443333322221 22678999999999999999887 65     5677777765433221 111111234699


Q ss_pred             EEecCccccc
Q psy5757         112 FLPHAPAESW  121 (139)
Q Consensus       112 ~vi~~~~~~~  121 (139)
                      .+-|||+|..
T Consensus       181 FcMcNPPFfe  190 (419)
T KOG2912|consen  181 FCMCNPPFFE  190 (419)
T ss_pred             EEecCCchhh
Confidence            9999999643

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=92.62  E-value=2.1  Score=33.55  Aligned_cols=90  Identities=14%  Similarity=0.100  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEc
Q psy5757          14 SAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVAL   92 (139)
Q Consensus        14 ~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~   92 (139)
                      .....+...+.+.....++++-+|+  |..+..+++.+.. ...++.+|.+++.++.+++..          .++.++.+
T Consensus       215 ~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----------~~~~~i~g  282 (453)
T PRK09496        215 EHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----------PNTLVLHG  282 (453)
T ss_pred             HHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----------CCCeEEEC
Confidence            3344555555433344567877666  7777777776632 348999999998887766542          34567788


Q ss_pred             cchhhhHHHhhhccCCceeEEecCc
Q psy5757          93 GMIKRIETVELMMKFDRYDFLPHAP  117 (139)
Q Consensus        93 d~~~~~~~~~~~~~~~~~D~vi~~~  117 (139)
                      |..+ ...+ ..+..+.+|.+++..
T Consensus       283 d~~~-~~~L-~~~~~~~a~~vi~~~  305 (453)
T PRK09496        283 DGTD-QELL-EEEGIDEADAFIALT  305 (453)
T ss_pred             CCCC-HHHH-HhcCCccCCEEEECC
Confidence            8765 2222 123345567766543

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=92.61  E-value=0.19  Score=36.36  Aligned_cols=52  Identities=17%  Similarity=0.105  Sum_probs=33.9

Q ss_pred             HHHhcccCC--CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q psy5757          20 LSIIQPHLN--ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI   74 (139)
Q Consensus        20 ~~~l~~~~~--~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~   74 (139)
                      +.+|.+.++  +..+++|+-||+|..+..+.....   +++.-|+++..+...+..+
T Consensus         9 ~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~---~vi~ND~~~~l~~~~~~~l   62 (260)
T PF02086_consen    9 AKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGK---RVIINDINPDLINFWKAVL   62 (260)
T ss_dssp             HHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SS---EEEEEES-HHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEEecchhHHHHHhccccc---ceeeeechHHHHHHHHHHH
Confidence            334433344  678999999999999998877544   8999999988777666443

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=92.46  E-value=0.48  Score=35.38  Aligned_cols=79  Identities=8%  Similarity=0.108  Sum_probs=57.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..|+.|+-+| ..--++.+++...-|+ ++..+|+++..++.-.+..+. +.      .|++.+.-|..+.+++-    -
T Consensus       151 L~gK~I~vvG-DDDLtsia~aLt~mpk-~iaVvDIDERli~fi~k~aee~g~------~~ie~~~~Dlr~plpe~----~  218 (354)
T COG1568         151 LEGKEIFVVG-DDDLTSIALALTGMPK-RIAVVDIDERLIKFIEKVAEELGY------NNIEAFVFDLRNPLPED----L  218 (354)
T ss_pred             cCCCeEEEEc-CchhhHHHHHhcCCCc-eEEEEechHHHHHHHHHHHHHhCc------cchhheeehhcccChHH----H
Confidence            3567899888 4445555555543233 899999999999999999888 54      78888888876654421    1


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      ..+||+.+..|+
T Consensus       219 ~~kFDvfiTDPp  230 (354)
T COG1568         219 KRKFDVFITDPP  230 (354)
T ss_pred             HhhCCeeecCch
Confidence            247999999887

>KOG1098|consensus

Probab=91.05  E-value=0.27  Score=40.38  Aligned_cols=39  Identities=23%  Similarity=0.415  Sum_probs=35.1

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCH
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVP   64 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~   64 (139)
                      ++.++..+||+||..|++....++.++..+-|+|+|+-|
T Consensus        41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            457888999999999999999999998888999999865

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=90.99  E-value=0.78  Score=35.11  Aligned_cols=45  Identities=18%  Similarity=0.262  Sum_probs=37.7

Q ss_pred             CCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          27 LNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        27 ~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      ++++++|+-.|+| .|..+..+++...  ++|+++|.+++..+.|++.
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l  209 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL  209 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh
Confidence            6789999888877 5678888888775  5999999999999888875

>KOG2782|consensus

Probab=90.80  E-value=0.4  Score=34.64  Aligned_cols=57  Identities=14%  Similarity=0.075  Sum_probs=46.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL   75 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~   75 (139)
                      ....++.+.  ..++...+|..-|.|+.+..+.+.- ++.++++.|-+|.+.+.|+....
T Consensus        32 ~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~   88 (303)
T KOG2782|consen   32 LDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSD   88 (303)
T ss_pred             hhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhH
Confidence            445566665  3678899999999999999999988 57899999999988888876653

>PRK07326 short chain dehydrogenase; Provisional

Probab=90.55  E-value=4.1  Score=28.61  Aligned_cols=82  Identities=15%  Similarity=0.125  Sum_probs=48.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.| |+|.++..+++.+. ...+|++++.++.......+.+..       ..+++++.+|+.+.  +.....  
T Consensus         5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~D~~~~~~~~~~~~~~   76 (237)
T PRK07326          5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN-------KGNVLGLAADVRDEADVQRAVDAI   76 (237)
T ss_pred             CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc-------cCcEEEEEccCCCHHHHHHHHHHH
Confidence            356788877 47777777776552 234899999887665555444432       14577788887651  111111  


Q ss_pred             hccCCceeEEecCcc
Q psy5757         104 MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~  118 (139)
                      ......+|+++.+..
T Consensus        77 ~~~~~~~d~vi~~ag   91 (237)
T PRK07326         77 VAAFGGLDVLIANAG   91 (237)
T ss_pred             HHHcCCCCEEEECCC
Confidence            112346898887754

>PRK07904 short chain dehydrogenase; Provisional

Probab=90.37  E-value=3.1  Score=29.96  Aligned_cols=86  Identities=9%  Similarity=0.093  Sum_probs=49.7

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCC--ceEEEEeCCHHH-HHHHHHHHHhhccccccCCcEEEEEccchhh--hHHH
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNST--GQVIGIEHVPQL-VNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETV  101 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~--~~v~~~d~~~~~-~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~  101 (139)
                      .-.++++|-.|+ +|..+..+++.+-.+  .+|+.++-+++. ++.+.+.++.     ....+++++..|+.+.  ..+.
T Consensus         5 ~~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~-----~~~~~v~~~~~D~~~~~~~~~~   78 (253)
T PRK07904          5 VGNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKA-----AGASSVEVIDFDALDTDSHPKV   78 (253)
T ss_pred             cCCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHh-----cCCCceEEEEecCCChHHHHHH
Confidence            345667888776 566777777664222  488888877654 5555444443     1114688888887651  1111


Q ss_pred             -hhhccCCceeEEecCcc
Q psy5757         102 -ELMMKFDRYDFLPHAPA  118 (139)
Q Consensus       102 -~~~~~~~~~D~vi~~~~  118 (139)
                       ..-...+.+|+++.+..
T Consensus        79 ~~~~~~~g~id~li~~ag   96 (253)
T PRK07904         79 IDAAFAGGDVDVAIVAFG   96 (253)
T ss_pred             HHHHHhcCCCCEEEEeee
Confidence             11111246898887654

>PRK06125 short chain dehydrogenase; Provisional

Probab=90.32  E-value=4.8  Score=28.81  Aligned_cols=83  Identities=12%  Similarity=0.123  Sum_probs=51.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhhc
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELMM  105 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~  105 (139)
                      .++.+|-.|+ +|..+..+++.+. ..++|+.++.+++..+.+.+.+....     ..++.++..|+.+.  +..+..  
T Consensus         6 ~~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~~--   77 (259)
T PRK06125          6 AGKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-----GVDVAVHALDLSSPEAREQLAA--   77 (259)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHH--
Confidence            4577887775 5556666665552 23489999988877766655554311     14677788887651  222211  


Q ss_pred             cCCceeEEecCccc
Q psy5757         106 KFDRYDFLPHAPAE  119 (139)
Q Consensus       106 ~~~~~D~vi~~~~~  119 (139)
                      ..+++|+++.+...
T Consensus        78 ~~g~id~lv~~ag~   91 (259)
T PRK06125         78 EAGDIDILVNNAGA   91 (259)
T ss_pred             HhCCCCEEEECCCC
Confidence            23578999988753

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=90.25  E-value=2.9  Score=31.93  Aligned_cols=47  Identities=19%  Similarity=0.340  Sum_probs=37.6

Q ss_pred             CCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH
Q psy5757          28 NENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL   75 (139)
Q Consensus        28 ~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~   75 (139)
                      +++.+++-+||| -|.++..+++..+ .++++.+|.+++.++.|++...
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g  214 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGG  214 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCC
Confidence            444589999999 5667777788775 4599999999999999988543

>PRK07454 short chain dehydrogenase; Provisional

Probab=90.23  E-value=4.7  Score=28.46  Aligned_cols=84  Identities=8%  Similarity=0.069  Sum_probs=50.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHh---h-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVE---L-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~---~-  103 (139)
                      +.+++|-.| |+|.++..+++.+- ...+|+.++.++...+...+....     . ..++.++..|+.+ .+.+.   . 
T Consensus         5 ~~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~-~~~~~~~~~D~~~-~~~~~~~~~~   76 (241)
T PRK07454          5 SMPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS-----T-GVKAAAYSIDLSN-PEAIAPGIAE   76 (241)
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----C-CCcEEEEEccCCC-HHHHHHHHHH
Confidence            345677776 57777777777662 234899999887655554444332     0 1467788888775 22211   1 


Q ss_pred             -hccCCceeEEecCcccc
Q psy5757         104 -MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~~  120 (139)
                       ......+|+++.+....
T Consensus        77 ~~~~~~~id~lv~~ag~~   94 (241)
T PRK07454         77 LLEQFGCPDVLINNAGMA   94 (241)
T ss_pred             HHHHcCCCCEEEECCCcc
Confidence             11234689999887643

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=90.17  E-value=3.2  Score=34.03  Aligned_cols=88  Identities=16%  Similarity=0.165  Sum_probs=61.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc---CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM---NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~---~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .+++||- ..|+|+.+..+.+..   +| .+++-+|.++..+..-.+.+...    +...++.+..+|+.+ ...+..-.
T Consensus       249 ~gK~vLV-TGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~----~~~~~~~~~igdVrD-~~~~~~~~  321 (588)
T COG1086         249 TGKTVLV-TGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREK----FPELKLRFYIGDVRD-RDRVERAM  321 (588)
T ss_pred             CCCEEEE-eCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhh----CCCcceEEEeccccc-HHHHHHHH
Confidence            4566765 457788777776655   23 38999999998888877777652    113678899999887 33333333


Q ss_pred             cCCceeEEecCccccccc
Q psy5757         106 KFDRYDFLPHAPAESWMN  123 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~  123 (139)
                      ..-+.|+|++..++.|++
T Consensus       322 ~~~kvd~VfHAAA~KHVP  339 (588)
T COG1086         322 EGHKVDIVFHAAALKHVP  339 (588)
T ss_pred             hcCCCceEEEhhhhccCc
Confidence            334689999999988876

>PRK08267 short chain dehydrogenase; Provisional

Probab=90.14  E-value=3.3  Score=29.63  Aligned_cols=79  Identities=13%  Similarity=0.038  Sum_probs=46.9

Q ss_pred             eEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhhc---
Q psy5757          32 KVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELMM---  105 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~---  105 (139)
                      ++|-.|+ +|..+..+++.+. ...+|+.++.+++.++...+....        .+++++..|+.+.  +.++....   
T Consensus         3 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~~~~~~~   73 (260)
T PRK08267          3 SIFITGA-ASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGA--------GNAWTGALDVTDRAAWDAALADFAAA   73 (260)
T ss_pred             EEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--------CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            4666664 4666666666542 234888998887766655443322        4678888888762  12111111   


Q ss_pred             cCCceeEEecCccc
Q psy5757         106 KFDRYDFLPHAPAE  119 (139)
Q Consensus       106 ~~~~~D~vi~~~~~  119 (139)
                      ..+++|+++.+...
T Consensus        74 ~~~~id~vi~~ag~   87 (260)
T PRK08267         74 TGGRLDVLFNNAGI   87 (260)
T ss_pred             cCCCCCEEEECCCC
Confidence            14568999988753

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=89.92  E-value=0.58  Score=38.79  Aligned_cols=103  Identities=15%  Similarity=0.098  Sum_probs=57.9

Q ss_pred             CeEEEEcccCChhHHHHHHHc------CC-----CceEEEEeCCH---HHHHHHH-----------HHHHh------hc-
Q psy5757          31 SKVLEIGSGSGYLTNMISELM------NS-----TGQVIGIEHVP---QLVNSSI-----------QNILH------SN-   78 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~------~~-----~~~v~~~d~~~---~~~~~a~-----------~~~~~------~~-   78 (139)
                      -+|+|+|-|+|.......+.+      .+     +.+++++|..|   +.+..+.           .....      ++ 
T Consensus        59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~  138 (662)
T PRK01747         59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH  138 (662)
T ss_pred             EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence            589999999999887777655      12     35889999754   2222221           11111      00 


Q ss_pred             cccccCC--cEEEEEccchhhhHHHhhhccCCceeEEecCcc------ccccccceeeeeeeccCCCC
Q psy5757          79 ARLLTDG--HIKFVALGMIKRIETVELMMKFDRYDFLPHAPA------ESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        79 ~~~~~~~--~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~------~~~~~~p~~~~~~~~~p~g~  138 (139)
                      +..+...  ++++..+|+.+.+.++.     ..+|+++...-      -.|-.+.....++...|+|.
T Consensus       139 ~~~~~~~~~~l~l~~gd~~~~~~~~~-----~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~  201 (662)
T PRK01747        139 RLLFDDGRVTLDLWFGDANELLPQLD-----ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGAT  201 (662)
T ss_pred             EEEecCCcEEEEEEecCHHHHHHhcc-----ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCE
Confidence            0011112  45677799776555432     45899987642      23444445555666666653

>PRK07814 short chain dehydrogenase; Provisional

Probab=89.64  E-value=5.8  Score=28.53  Aligned_cols=83  Identities=12%  Similarity=0.139  Sum_probs=50.3

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-  104 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-  104 (139)
                      +++.+|-.| |+|..+..+++.+ ....+|+.++.+++..+...+.+...      ..+++++..|+.+.  +.++... 
T Consensus         9 ~~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~   81 (263)
T PRK07814          9 DDQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA------GRRAHVVAADLAHPEATAGLAGQA   81 (263)
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence            467787777 4666777777655 22458999998877666555544331      13577777887652  1111111 


Q ss_pred             -ccCCceeEEecCcc
Q psy5757         105 -MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 -~~~~~~D~vi~~~~  118 (139)
                       ...+++|+++.+..
T Consensus        82 ~~~~~~id~vi~~Ag   96 (263)
T PRK07814         82 VEAFGRLDIVVNNVG   96 (263)
T ss_pred             HHHcCCCCEEEECCC
Confidence             12346899998764

>KOG2360|consensus

Probab=89.58  E-value=0.8  Score=35.59  Aligned_cols=81  Identities=14%  Similarity=0.225  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|+|..|-.|.-+..++.-+...++++++|.+..-.+..+..+.. +.      ..++...+|+... .   ....
T Consensus       212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~------~~~~~~~~df~~t-~---~~~~  281 (413)
T KOG2360|consen  212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV------SIVESVEGDFLNT-A---TPEK  281 (413)
T ss_pred             CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC------CccccccccccCC-C---Cccc
Confidence            5678999999999999999988887788999999999888888777776 43      6677778886552 1   1112


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      +..+-.++..|+
T Consensus       282 ~~~v~~iL~Dps  293 (413)
T KOG2360|consen  282 FRDVTYILVDPS  293 (413)
T ss_pred             ccceeEEEeCCC
Confidence            344666666665

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=89.56  E-value=5.5  Score=28.18  Aligned_cols=80  Identities=11%  Similarity=0.149  Sum_probs=48.2

Q ss_pred             CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHH---h--hh
Q psy5757          31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETV---E--LM  104 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~--~~  104 (139)
                      +++|-.| ++|.++..+++.+- ...+|+.++.++...+.....+...      ..++.++..|+.+ .+.+   .  ..
T Consensus         2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~-~~~~~~~~~~~~   73 (255)
T TIGR01963         2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA------GGSVIYLVADVTK-EDEIADMIAAAA   73 (255)
T ss_pred             CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEECCCCC-HHHHHHHHHHHH
Confidence            3455555 67888888877652 2347999998876665555444331      1467788888776 2211   0  11


Q ss_pred             ccCCceeEEecCcc
Q psy5757         105 MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 ~~~~~~D~vi~~~~  118 (139)
                      .....+|+++++..
T Consensus        74 ~~~~~~d~vi~~a~   87 (255)
T TIGR01963        74 AEFGGLDILVNNAG   87 (255)
T ss_pred             HhcCCCCEEEECCC
Confidence            12345899988774

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=89.41  E-value=6.1  Score=28.22  Aligned_cols=84  Identities=15%  Similarity=0.178  Sum_probs=51.8

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHh---h
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVE---L  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~---~  103 (139)
                      .+++++|-.| |+|..+..+++.+- ...+|+.++-++..++...+.+...      ..++.++..|+.+ .+.+.   .
T Consensus        10 ~~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~~~~~Dl~d-~~~i~~~~~   81 (259)
T PRK08213         10 LSGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL------GIDALWIAADVAD-EADIERLAE   81 (259)
T ss_pred             cCCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEccCCC-HHHHHHHHH
Confidence            3567788877 56777777777662 2348888888877666555544331      1357778888775 22221   1


Q ss_pred             --hccCCceeEEecCccc
Q psy5757         104 --MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 --~~~~~~~D~vi~~~~~  119 (139)
                        ......+|.++++...
T Consensus        82 ~~~~~~~~id~vi~~ag~   99 (259)
T PRK08213         82 ETLERFGHVDILVNNAGA   99 (259)
T ss_pred             HHHHHhCCCCEEEECCCC
Confidence              1112468999888753

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=89.05  E-value=0.87  Score=33.50  Aligned_cols=46  Identities=15%  Similarity=0.140  Sum_probs=30.7

Q ss_pred             CCCCeEEEEcccCChh-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          28 NENSKVLEIGSGSGYL-TNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~-~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      .++.++||+|||.-.. ...+.+...   +++..|..+.-.+..++.++.
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~f~---~I~l~dy~~~N~~el~kWl~~  101 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEWFE---EIVLSDYSEQNREELEKWLRK  101 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGTEE---EEEEEESSHHHHHHHHHHHTT
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHhhc---ceEEeeccHhhHHHHHHHHCC
Confidence            3567899999997543 444445554   899999998888777766644

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK05599 hypothetical protein; Provisional

Probab=89.05  E-value=6  Score=28.27  Aligned_cols=81  Identities=9%  Similarity=0.074  Sum_probs=48.3

Q ss_pred             eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhh--hcc
Q psy5757          32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVEL--MMK  106 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~~  106 (139)
                      .+|-.|++ ++.+..+++.+....+|+.++-+++.++.+.+.+.. +      ..++.++..|+.+.  +..+..  ...
T Consensus         2 ~vlItGas-~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~------~~~~~~~~~Dv~d~~~v~~~~~~~~~~   74 (246)
T PRK05599          2 SILILGGT-SDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG------ATSVHVLSFDAQDLDTHRELVKQTQEL   74 (246)
T ss_pred             eEEEEeCc-cHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc------CCceEEEEcccCCHHHHHHHHHHHHHh
Confidence            45656654 556666666664455888888887777666555544 2      13466777777651  222111  112


Q ss_pred             CCceeEEecCccc
Q psy5757         107 FDRYDFLPHAPAE  119 (139)
Q Consensus       107 ~~~~D~vi~~~~~  119 (139)
                      .+.+|+++.|...
T Consensus        75 ~g~id~lv~nag~   87 (246)
T PRK05599         75 AGEISLAVVAFGI   87 (246)
T ss_pred             cCCCCEEEEecCc
Confidence            4578999987653

>PRK06949 short chain dehydrogenase; Provisional

Probab=89.01  E-value=6.5  Score=27.96  Aligned_cols=84  Identities=15%  Similarity=0.150  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      ..++.+|-.| |+|..+..+++.+. ...+|+.++.+++.++.....+...      ..+++++..|+.+.  +.+... 
T Consensus         7 ~~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~   79 (258)
T PRK06949          7 LEGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE------GGAAHVVSLDVTDYQSIKAAVAH   79 (258)
T ss_pred             CCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHH
Confidence            3457788777 66777777777663 2347999998887766665554330      13577787787641  111111 


Q ss_pred             -hccCCceeEEecCcc
Q psy5757         104 -MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~  118 (139)
                       ....+.+|+++.+..
T Consensus        80 ~~~~~~~~d~li~~ag   95 (258)
T PRK06949         80 AETEAGTIDILVNNSG   95 (258)
T ss_pred             HHHhcCCCCEEEECCC
Confidence             112346899988876

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=88.89  E-value=6.7  Score=27.96  Aligned_cols=84  Identities=12%  Similarity=0.113  Sum_probs=51.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++++|-.| |+|..+..+++.+- ...+|+..+-+++.++...+.+...      -.++.++..|+.+.  +..+..  
T Consensus         9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~~~~~D~~~~~~~~~~~~~~   81 (255)
T PRK07523          9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ------GLSAHALAFDVTDHDAVRAAIDAF   81 (255)
T ss_pred             CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CceEEEEEccCCCHHHHHHHHHHH
Confidence            467888777 57777777777652 2348899988877666555554430      13577777887651  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|++...
T Consensus        82 ~~~~~~~d~li~~ag~   97 (255)
T PRK07523         82 EAEIGPIDILVNNAGM   97 (255)
T ss_pred             HHhcCCCCEEEECCCC
Confidence            1123568999988763

>PRK07774 short chain dehydrogenase; Provisional

Probab=88.73  E-value=6.7  Score=27.75  Aligned_cols=84  Identities=13%  Similarity=0.186  Sum_probs=49.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh--HHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI--ETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~--  103 (139)
                      .++++|-.| |+|..+..+++.+ ....+++.++-++...+...+.+...      ..++.++..|..+.-  ..+..  
T Consensus         5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~   77 (250)
T PRK07774          5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD------GGTAIAVQVDVSDPDSAKAMADAT   77 (250)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            456777666 6677777777755 22348999998876555554444330      135667778877521  11111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|++...
T Consensus        78 ~~~~~~id~vi~~ag~   93 (250)
T PRK07774         78 VSAFGGIDYLVNNAAI   93 (250)
T ss_pred             HHHhCCCCEEEECCCC
Confidence            1123468999988763

>KOG0821|consensus

Probab=88.72  E-value=0.9  Score=32.97  Aligned_cols=59  Identities=19%  Similarity=0.247  Sum_probs=44.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ....|.+||.|.|+.++.+.+..-.  ++..+|+++..+.-.+......      ..+..+.++|++
T Consensus        50 ~~~~v~eIgPgpggitR~il~a~~~--RL~vVE~D~RFip~LQ~L~EAa------~~~~~IHh~D~L  108 (326)
T KOG0821|consen   50 TNAYVYEIGPGPGGITRSILNADVA--RLLVVEKDTRFIPGLQMLSEAA------PGKLRIHHGDVL  108 (326)
T ss_pred             ccceeEEecCCCCchhHHHHhcchh--heeeeeeccccChHHHHHhhcC------CcceEEeccccc
Confidence            4568999999999999999988743  8889999987776665544331      245667777765

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=88.67  E-value=3.5  Score=29.61  Aligned_cols=72  Identities=15%  Similarity=0.172  Sum_probs=42.0

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNST-GQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      ++++-+|||  .++..+++.+... -.|+.+|.+++.++.....          ....+.+++|..+ ..-+ .++..+.
T Consensus         1 m~iiIiG~G--~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~----------~~~~~~v~gd~t~-~~~L-~~agi~~   66 (225)
T COG0569           1 MKIIIIGAG--RVGRSVARELSEEGHNVVLIDRDEERVEEFLAD----------ELDTHVVIGDATD-EDVL-EEAGIDD   66 (225)
T ss_pred             CEEEEECCc--HHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh----------hcceEEEEecCCC-HHHH-HhcCCCc
Confidence            345666665  4555555554322 2899999999877763321          1345677788776 2222 3444566


Q ss_pred             eeEEecC
Q psy5757         110 YDFLPHA  116 (139)
Q Consensus       110 ~D~vi~~  116 (139)
                      +|+++..
T Consensus        67 aD~vva~   73 (225)
T COG0569          67 ADAVVAA   73 (225)
T ss_pred             CCEEEEe
Confidence            7777544

>KOG3924|consensus

Probab=88.54  E-value=1.8  Score=33.79  Aligned_cols=88  Identities=13%  Similarity=0.169  Sum_probs=54.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh--hcccccc--CCcEEEEEccchhhhHHHh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH--SNARLLT--DGHIKFVALGMIKRIETVE  102 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~--~~~i~~~~~d~~~~~~~~~  102 (139)
                      +.++....|+|+|-|.+...++...+.. .-+|+|+.+..-+.|..+...  .++..++  ...+..+++++.+ .....
T Consensus       190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k-~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~-~~~v~  267 (419)
T KOG3924|consen  190 LGPADVFMDLGSGVGQLVCFVAAYAGCK-KSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD-PKRVT  267 (419)
T ss_pred             cCCCCcccCCCcccchhhHHHHHhhccc-cccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC-HHHHH
Confidence            5677889999999999999888877533 678999876655555444322  1111111  2347788888765 22111


Q ss_pred             hhccCCceeEEecCcc
Q psy5757         103 LMMKFDRYDFLPHAPA  118 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~  118 (139)
                      +-  ....+++++|..
T Consensus       268 eI--~~eatvi~vNN~  281 (419)
T KOG3924|consen  268 EI--QTEATVIFVNNV  281 (419)
T ss_pred             HH--hhcceEEEEecc
Confidence            11  123688888875

>KOG2793|consensus

Probab=88.48  E-value=1.1  Score=32.86  Aligned_cols=42  Identities=26%  Similarity=0.379  Sum_probs=28.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      +...|||+|+|+|-.+..++....  +++...|... .....+.+
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~-~~~~L~~~  127 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLG--AEVVLTDLPK-VVENLKFN  127 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhc--ceeccCCchh-hHHHHHHh
Confidence            355799999999977777777553  3777777663 34444444

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=88.46  E-value=3.8  Score=30.74  Aligned_cols=80  Identities=16%  Similarity=0.163  Sum_probs=47.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCC---ceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNST---GQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~---~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .++++|-.| |+|..+..+++.+-..   .+|++++.++.......+.+.        ..+++++.+|+.+ ...+..- 
T Consensus         3 ~~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~--------~~~~~~v~~Dl~d-~~~l~~~-   71 (324)
T TIGR03589         3 NNKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFP--------APCLRFFIGDVRD-KERLTRA-   71 (324)
T ss_pred             CCCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhC--------CCcEEEEEccCCC-HHHHHHH-
Confidence            356777655 5788888887765321   378888766443222221111        1468888999877 3333221 


Q ss_pred             cCCceeEEecCcccc
Q psy5757         106 KFDRYDFLPHAPAES  120 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~  120 (139)
                       .+.+|+||.+....
T Consensus        72 -~~~iD~Vih~Ag~~   85 (324)
T TIGR03589        72 -LRGVDYVVHAAALK   85 (324)
T ss_pred             -HhcCCEEEECcccC
Confidence             23489999877643

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK08339 short chain dehydrogenase; Provisional

Probab=88.37  E-value=6.8  Score=28.32  Aligned_cols=84  Identities=10%  Similarity=0.152  Sum_probs=49.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-  104 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-  104 (139)
                      +++.+|-.|+++ ..+..+++.+ ....+|+.++.+++.++.+.+.+....     ..++.++..|+.+.  +..+... 
T Consensus         7 ~~k~~lItGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~~~~   80 (263)
T PRK08339          7 SGKLAFTTASSK-GIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-----NVDVSYIVADLTKREDLERTVKEL   80 (263)
T ss_pred             CCCEEEEeCCCC-cHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHHHH
Confidence            456777766554 4455555544 123489999988877766665554310     14677888887752  2221111 


Q ss_pred             ccCCceeEEecCcc
Q psy5757         105 MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 ~~~~~~D~vi~~~~  118 (139)
                      ...+.+|+++.|..
T Consensus        81 ~~~g~iD~lv~nag   94 (263)
T PRK08339         81 KNIGEPDIFFFSTG   94 (263)
T ss_pred             HhhCCCcEEEECCC
Confidence            12456899988765

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=88.35  E-value=1.9  Score=30.57  Aligned_cols=74  Identities=18%  Similarity=0.227  Sum_probs=46.6

Q ss_pred             cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHc---CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcE
Q psy5757          11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELM---NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHI   87 (139)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~---~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i   87 (139)
                      ..++=+-.+.+.|-  -.+...|+|+|+-.|+-+.+.|..+   +...+|+++|++-..++.+...          .+.+
T Consensus        53 k~p~D~~~yQellw--~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------~p~i  120 (237)
T COG3510          53 KSPSDMWNYQELLW--ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------VPDI  120 (237)
T ss_pred             CCHHHHHHHHHHHH--hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----------CCCe
Confidence            34443444555553  2444688999998887666665543   4346999999985554444332          2678


Q ss_pred             EEEEccchh
Q psy5757          88 KFVALGMIK   96 (139)
Q Consensus        88 ~~~~~d~~~   96 (139)
                      .++.++..+
T Consensus       121 ~f~egss~d  129 (237)
T COG3510         121 LFIEGSSTD  129 (237)
T ss_pred             EEEeCCCCC
Confidence            888887665

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=88.24  E-value=1.8  Score=35.26  Aligned_cols=64  Identities=17%  Similarity=0.150  Sum_probs=42.1

Q ss_pred             ccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCceeEEec
Q psy5757          38 SGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPH  115 (139)
Q Consensus        38 ~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~  115 (139)
                      ||.|..+..+++.... .-.++.+|.+++.++.+++            .....+.+|..+ .+-+ .++.-++.|.++.
T Consensus       423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~------------~g~~~i~GD~~~-~~~L-~~a~i~~a~~viv  487 (558)
T PRK10669        423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE------------RGIRAVLGNAAN-EEIM-QLAHLDCARWLLL  487 (558)
T ss_pred             ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------CCCeEEEcCCCC-HHHH-HhcCccccCEEEE
Confidence            6677788888887632 3489999999988877754            245678888776 2222 2334456775543

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=88.11  E-value=7.4  Score=27.87  Aligned_cols=80  Identities=10%  Similarity=0.084  Sum_probs=47.9

Q ss_pred             CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--hc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--MM  105 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~  105 (139)
                      +++|-.|++ |..+..+++.+. ...+|+.++.++..++.+.+.+..       ..++.++..|+.+.  +.++..  ..
T Consensus         1 m~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~Dv~d~~~~~~~~~~~~~   72 (259)
T PRK08340          1 MNVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKE-------YGEVYAVKADLSDKDDLKNLVKEAWE   72 (259)
T ss_pred             CeEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-------cCCceEEEcCCCCHHHHHHHHHHHHH
Confidence            356667754 556666666552 234889999888777666555543       13567777887651  222211  11


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ..+.+|+++.|..
T Consensus        73 ~~g~id~li~naG   85 (259)
T PRK08340         73 LLGGIDALVWNAG   85 (259)
T ss_pred             hcCCCCEEEECCC
Confidence            2457899988865

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=88.05  E-value=3.2  Score=30.76  Aligned_cols=63  Identities=17%  Similarity=0.222  Sum_probs=28.8

Q ss_pred             hhhhhcccccChH-H------HHHHHHHhcc---cCCCCCeEEEEcccCC----hhHHHHHHHcCCCceEEEEeCCH
Q psy5757           2 NLVKIGAAIGGIS-A------ILTYLSIIQP---HLNENSKVLEIGSGSG----YLTNMISELMNSTGQVIGIEHVP   64 (139)
Q Consensus         2 ~~~~~~~~~~~~~-~------~~~~~~~l~~---~~~~~~~iLdiG~G~G----~~~~~l~~~~~~~~~v~~~d~~~   64 (139)
                      ++..||+...-+. .      ..++...+..   -++..++|+.+|+|+-    --+.-|.++++.++.++-.|+.+
T Consensus        24 ~l~NYg~~~~lp~G~~~NV~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d  100 (299)
T PF06460_consen   24 DLPNYGAPIKLPPGIMMNVAKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRD  100 (299)
T ss_dssp             S--S-S--TTS-TT--HHHHHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS-
T ss_pred             cccccCCCCCCCCcceeeHHHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhh
Confidence            3556777665442 1      2244444432   1367899999999964    34555666666677778888875

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>PRK06940 short chain dehydrogenase; Provisional

Probab=88.01  E-value=6.7  Score=28.60  Aligned_cols=80  Identities=11%  Similarity=0.156  Sum_probs=49.0

Q ss_pred             eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-ccCC
Q psy5757          32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-MKFD  108 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-~~~~  108 (139)
                      .+|--|+  |..+..+++.+....+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+... ...+
T Consensus         4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~i~~~~~~~~~~g   75 (275)
T PRK06940          4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA------GFDVSTQEVDVSSRESVKALAATAQTLG   75 (275)
T ss_pred             EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEeecCCHHHHHHHHHHHHhcC
Confidence            4444453  5788888888754568999998876665555444330      13567777787651  2222111 1245


Q ss_pred             ceeEEecCccc
Q psy5757         109 RYDFLPHAPAE  119 (139)
Q Consensus       109 ~~D~vi~~~~~  119 (139)
                      .+|+++.|...
T Consensus        76 ~id~li~nAG~   86 (275)
T PRK06940         76 PVTGLVHTAGV   86 (275)
T ss_pred             CCCEEEECCCc
Confidence            78999988763

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=87.94  E-value=4.4  Score=30.62  Aligned_cols=81  Identities=15%  Similarity=0.098  Sum_probs=44.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ++++||-.| |+|..+..+++.+- ...+|++++.++.......+.+..       ..+++++.+|+.+ ...+..-...
T Consensus         3 ~~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~-~~~~~~~~~~   73 (349)
T TIGR02622         3 QGKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNL-------AKKIEDHFGDIRD-AAKLRKAIAE   73 (349)
T ss_pred             CCCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhh-------cCCceEEEccCCC-HHHHHHHHhh
Confidence            357777765 67777777777662 223788888765432222111111       1356777888765 2222111111


Q ss_pred             CceeEEecCcc
Q psy5757         108 DRYDFLPHAPA  118 (139)
Q Consensus       108 ~~~D~vi~~~~  118 (139)
                      ..+|+|+....
T Consensus        74 ~~~d~vih~A~   84 (349)
T TIGR02622        74 FKPEIVFHLAA   84 (349)
T ss_pred             cCCCEEEECCc
Confidence            24688887765

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=87.83  E-value=5.8  Score=27.13  Aligned_cols=94  Identities=11%  Similarity=0.044  Sum_probs=57.5

Q ss_pred             cccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCc
Q psy5757           7 GAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGH   86 (139)
Q Consensus         7 ~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~   86 (139)
                      .|..-+......+.+.+.+...++.+|+=+||=+-+.  .+.+...+..+++-.|+|.....             ++ .+
T Consensus         3 sQfwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~--~l~~~~~~~~~~~Lle~D~RF~~-------------~~-~~   66 (162)
T PF10237_consen    3 SQFWYSDETAEFLARELLDGALDDTRIACLSTPSLYE--ALKKESKPRIQSFLLEYDRRFEQ-------------FG-GD   66 (162)
T ss_pred             cccccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHH--HHHhhcCCCccEEEEeecchHHh-------------cC-Cc
Confidence            3455566667777777775456678998888754443  33332334558999999953222             11 23


Q ss_pred             EEEEEccchhhhHHHhhhccCCceeEEecCccc
Q psy5757          87 IKFVALGMIKRIETVELMMKFDRYDFLPHAPAE  119 (139)
Q Consensus        87 i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~  119 (139)
                       +++.-|..+ ..+++... ..++|+|+..|+|
T Consensus        67 -~F~fyD~~~-p~~~~~~l-~~~~d~vv~DPPF   96 (162)
T PF10237_consen   67 -EFVFYDYNE-PEELPEEL-KGKFDVVVIDPPF   96 (162)
T ss_pred             -ceEECCCCC-hhhhhhhc-CCCceEEEECCCC
Confidence             466666554 23333232 3579999999997

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.43  E-value=8.1  Score=27.19  Aligned_cols=83  Identities=6%  Similarity=0.025  Sum_probs=50.3

Q ss_pred             CCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757          30 NSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M  104 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~  104 (139)
                      ++.++-.| |+|.++..+++.+ ....+|+.++.++...+...+.+...      ..++.++..|+.+.  +.....  .
T Consensus         7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~   79 (239)
T PRK07666          7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY------GVKVVIATADVSDYEEVTAAIEQLK   79 (239)
T ss_pred             CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCeEEEEECCCCCHHHHHHHHHHHH
Confidence            46677777 5778888877765 23458899998876655544444331      14677888887651  111111  1


Q ss_pred             ccCCceeEEecCccc
Q psy5757         105 MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~  119 (139)
                      .....+|+++++...
T Consensus        80 ~~~~~id~vi~~ag~   94 (239)
T PRK07666         80 NELGSIDILINNAGI   94 (239)
T ss_pred             HHcCCccEEEEcCcc
Confidence            123468999988653

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=87.23  E-value=2.3  Score=27.90  Aligned_cols=34  Identities=24%  Similarity=0.354  Sum_probs=20.6

Q ss_pred             CCCeEEEEcccCCh-hHHHHHHHcCCCceEEEEeCCHH
Q psy5757          29 ENSKVLEIGSGSGY-LTNMISELMNSTGQVIGIEHVPQ   65 (139)
Q Consensus        29 ~~~~iLdiG~G~G~-~~~~l~~~~~~~~~v~~~d~~~~   65 (139)
                      ...+++|+|-|.-. .+..|.++. .  .|+++|+++.
T Consensus        13 ~~~kiVEVGiG~~~~vA~~L~~~G-~--dV~~tDi~~~   47 (127)
T PF03686_consen   13 NYGKIVEVGIGFNPEVAKKLKERG-F--DVIATDINPR   47 (127)
T ss_dssp             -SSEEEEET-TT--HHHHHHHHHS----EEEEE-SS-S
T ss_pred             CCCcEEEECcCCCHHHHHHHHHcC-C--cEEEEECccc
Confidence            33499999999764 455555554 3  8999999986

; PDB: 2K4M_A.

>PRK05854 short chain dehydrogenase; Provisional

Probab=87.16  E-value=10  Score=28.23  Aligned_cols=85  Identities=11%  Similarity=0.100  Sum_probs=50.3

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHH---Hhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIET---VEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~-  103 (139)
                      .++.++-.|++ ++.+..+++.+. ...+|+...-+++..+.+.+.+...    ....++.++..|+.+ ..+   +.. 
T Consensus        13 ~gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~----~~~~~v~~~~~Dl~d-~~sv~~~~~~   86 (313)
T PRK05854         13 SGKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTA----VPDAKLSLRALDLSS-LASVAALGEQ   86 (313)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh----CCCCceEEEEecCCC-HHHHHHHHHH
Confidence            45677766654 555666665552 2348888888877666665555431    012467788888765 222   111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|++|.|...
T Consensus        87 ~~~~~~~iD~li~nAG~  103 (313)
T PRK05854         87 LRAEGRPIHLLINNAGV  103 (313)
T ss_pred             HHHhCCCccEEEECCcc
Confidence             1234579999998753

>PRK07890 short chain dehydrogenase; Provisional

Probab=87.13  E-value=8.7  Score=27.28  Aligned_cols=84  Identities=12%  Similarity=0.083  Sum_probs=50.2

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--  102 (139)
                      ..++++|-.|+ +|..+..+++.+- ...+|+.++.++...+.+.+.+...      ..+++++..|+.+.  +..+.  
T Consensus         3 l~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~   75 (258)
T PRK07890          3 LKGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL------GRRALAVPTDITDEDQCANLVAL   75 (258)
T ss_pred             cCCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh------CCceEEEecCCCCHHHHHHHHHH
Confidence            34577887665 5566666666542 2348999998877666555554431      14577888887651  21111  


Q ss_pred             hhccCCceeEEecCcc
Q psy5757         103 LMMKFDRYDFLPHAPA  118 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~  118 (139)
                      .....+.+|+++.+..
T Consensus        76 ~~~~~g~~d~vi~~ag   91 (258)
T PRK07890         76 ALERFGRVDALVNNAF   91 (258)
T ss_pred             HHHHcCCccEEEECCc
Confidence            1112356899998875

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=87.00  E-value=8.3  Score=27.74  Aligned_cols=84  Identities=14%  Similarity=0.053  Sum_probs=47.1

Q ss_pred             CCCeEEEEcccC-ChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGS-GYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~-G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      +++.+|-.|+++ ++.+..+++.+- ...+|+..+.++...+.+++.... .      ....++..|+.+.  +.++.. 
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~-~------~~~~~~~~D~~~~~~v~~~~~~   81 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEE-L------DAPIFLPLDVREPGQLEAVFAR   81 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHh-h------ccceEEecCcCCHHHHHHHHHH
Confidence            567888889887 377777777652 234777777775433323222222 1      2334566676651  222111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ...++++|+++.|...
T Consensus        82 ~~~~~g~ld~lv~nAg~   98 (258)
T PRK07533         82 IAEEWGRLDFLLHSIAF   98 (258)
T ss_pred             HHHHcCCCCEEEEcCcc
Confidence             1234679999998754

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.00  E-value=8.6  Score=27.09  Aligned_cols=83  Identities=10%  Similarity=0.117  Sum_probs=49.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-  104 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-  104 (139)
                      +++.+|-.|+ +|..+..+++.+. ...+++.++.++..++.+.+.+...      ..++.++..|+.+.  +..+... 
T Consensus         4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~   76 (253)
T PRK08217          4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL------GTEVRGYAANVTDEEDVEATFAQI   76 (253)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHHH
Confidence            4567887775 5666666666552 2347899998877666555544431      14677777886641  1111111 


Q ss_pred             -ccCCceeEEecCcc
Q psy5757         105 -MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 -~~~~~~D~vi~~~~  118 (139)
                       ...+.+|++|++..
T Consensus        77 ~~~~~~id~vi~~ag   91 (253)
T PRK08217         77 AEDFGQLNGLINNAG   91 (253)
T ss_pred             HHHcCCCCEEEECCC
Confidence             11246899998875

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=86.99  E-value=5.6  Score=29.57  Aligned_cols=83  Identities=16%  Similarity=0.205  Sum_probs=47.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++++|-.| |+|..+..+++.+-. ..+|+++..++............ +.     ..+++++.+|+.+ ...+..- 
T Consensus         3 ~~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~d-~~~~~~~-   74 (325)
T PLN02989          3 DGGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGA-----KERLKLFKADLLD-EGSFELA-   74 (325)
T ss_pred             CCCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCC-----CCceEEEeCCCCC-chHHHHH-
Confidence            3467787776 678888888876622 33676666554433322222111 11     1468888899876 2222111 


Q ss_pred             cCCceeEEecCccc
Q psy5757         106 KFDRYDFLPHAPAE  119 (139)
Q Consensus       106 ~~~~~D~vi~~~~~  119 (139)
                       .+.+|+|+++...
T Consensus        75 -~~~~d~vih~A~~   87 (325)
T PLN02989         75 -IDGCETVFHTASP   87 (325)
T ss_pred             -HcCCCEEEEeCCC
Confidence             2347988888763

>PRK05867 short chain dehydrogenase; Provisional

Probab=86.55  E-value=9.6  Score=27.15  Aligned_cols=84  Identities=11%  Similarity=0.057  Sum_probs=49.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +++.+|-.|++ |..+..+++.+- ...+|+.++.+++.++...+.+...      ..++..+..|+.+.  +..+..  
T Consensus         8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~   80 (253)
T PRK05867          8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS------GGKVVPVCCDVSQHQQVTSMLDQV   80 (253)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHHHHH
Confidence            46778887764 455555555442 2348888888877666665554431      13566777787651  221111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+++|+++.+...
T Consensus        81 ~~~~g~id~lv~~ag~   96 (253)
T PRK05867         81 TAELGGIDIAVCNAGI   96 (253)
T ss_pred             HHHhCCCCEEEECCCC
Confidence            1123578999988754

>PRK08251 short chain dehydrogenase; Provisional

Probab=86.54  E-value=9.3  Score=27.00  Aligned_cols=83  Identities=12%  Similarity=0.042  Sum_probs=50.1

Q ss_pred             CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--hc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--MM  105 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~  105 (139)
                      +.+|-.| |+|..+..+++.+. ...+++..+.++...+.....+....    ...+++++..|+.+.  +.++..  ..
T Consensus         3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~   77 (248)
T PRK08251          3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY----PGIKVAVAALDVNDHDQVFEVFAEFRD   77 (248)
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4677666 57777777777662 23488888888777666555443310    024678888887762  111111  11


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ..+.+|+++.+..
T Consensus        78 ~~~~id~vi~~ag   90 (248)
T PRK08251         78 ELGGLDRVIVNAG   90 (248)
T ss_pred             HcCCCCEEEECCC
Confidence            2456899988874

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=86.51  E-value=10  Score=27.77  Aligned_cols=80  Identities=21%  Similarity=0.241  Sum_probs=50.6

Q ss_pred             CCeEEEEcccCCh---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh--HHH--h
Q psy5757          30 NSKVLEIGSGSGY---LTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI--ETV--E  102 (139)
Q Consensus        30 ~~~iLdiG~G~G~---~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~--~  102 (139)
                      ++.++-=|+++|.   .+..+++...   +|+...-..+.++.....+..        .++..+..|+++.-  +.+  .
T Consensus         6 ~kv~lITGASSGiG~A~A~~l~~~G~---~vvl~aRR~drL~~la~~~~~--------~~~~~~~~DVtD~~~~~~~i~~   74 (246)
T COG4221           6 GKVALITGASSGIGEATARALAEAGA---KVVLAARREERLEALADEIGA--------GAALALALDVTDRAAVEAAIEA   74 (246)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHCCC---eEEEEeccHHHHHHHHHhhcc--------CceEEEeeccCCHHHHHHHHHH
Confidence            3455665666653   3444444443   899999998888887777643        35667777877631  111  1


Q ss_pred             hhccCCceeEEecCcccc
Q psy5757         103 LMMKFDRYDFLPHAPAES  120 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~~  120 (139)
                      ....++++|+++.|.-+.
T Consensus        75 ~~~~~g~iDiLvNNAGl~   92 (246)
T COG4221          75 LPEEFGRIDILVNNAGLA   92 (246)
T ss_pred             HHHhhCcccEEEecCCCC
Confidence            334577899999987533

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=86.43  E-value=9.5  Score=27.01  Aligned_cols=85  Identities=12%  Similarity=0.157  Sum_probs=50.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh----hhHHHh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK----RIETVE  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~----~~~~~~  102 (139)
                      .+++.+|-.| |+|..+..+++.+. ...+|+.++.++...+...+.++.     ....++.++..|+..    .+..+.
T Consensus        10 ~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~~d~~~~~~~~~~~~~   83 (247)
T PRK08945         10 LKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEA-----AGGPQPAIIPLDLLTATPQNYQQLA   83 (247)
T ss_pred             cCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHh-----cCCCCceEEEecccCCCHHHHHHHH
Confidence            4667888887 56777777766552 234899999987766665555544     111355666666531    111110


Q ss_pred             --hhccCCceeEEecCcc
Q psy5757         103 --LMMKFDRYDFLPHAPA  118 (139)
Q Consensus       103 --~~~~~~~~D~vi~~~~  118 (139)
                        ......++|.++++..
T Consensus        84 ~~~~~~~~~id~vi~~Ag  101 (247)
T PRK08945         84 DTIEEQFGRLDGVLHNAG  101 (247)
T ss_pred             HHHHHHhCCCCEEEECCc
Confidence              1112356899998864

>PRK06720 hypothetical protein; Provisional

Probab=86.41  E-value=8.3  Score=26.30  Aligned_cols=86  Identities=21%  Similarity=0.273  Sum_probs=47.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +++.++-.|.+.| .+..++..+ ....+++.++.+++..+.+.+.+..     . ..+..++..|..+.  +.++..  
T Consensus        15 ~gk~~lVTGa~~G-IG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~-----~-~~~~~~~~~Dl~~~~~v~~~v~~~   87 (169)
T PRK06720         15 AGKVAIVTGGGIG-IGRNTALLLAKQGAKVIVTDIDQESGQATVEEITN-----L-GGEALFVSYDMEKQGDWQRVISIT   87 (169)
T ss_pred             CCCEEEEecCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----c-CCcEEEEEccCCCHHHHHHHHHHH
Confidence            4567777776554 444444433 2234888889887766555444433     0 13455667776541  122111  


Q ss_pred             hccCCceeEEecCccccc
Q psy5757         104 MMKFDRYDFLPHAPAESW  121 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~~~  121 (139)
                      ....+.+|+++.|....+
T Consensus        88 ~~~~G~iDilVnnAG~~~  105 (169)
T PRK06720         88 LNAFSRIDMLFQNAGLYK  105 (169)
T ss_pred             HHHcCCCCEEEECCCcCC
Confidence            113467899998876444

>PRK06194 hypothetical protein; Provisional

Probab=86.34  E-value=8.7  Score=27.90  Aligned_cols=83  Identities=6%  Similarity=0.071  Sum_probs=49.3

Q ss_pred             CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M  104 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~  104 (139)
                      ++++|-.| |+|..+..+++.+. ...+|+.++.+++.++...+.+...      ..++.++.+|+.+.  +..+..  .
T Consensus         6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~d~~~~~~~~~~~~   78 (287)
T PRK06194          6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ------GAEVLGVRTDVSDAAQVEALADAAL   78 (287)
T ss_pred             CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHHHH
Confidence            45677555 55666766666552 2348899998876666554444331      13577788887751  222111  1


Q ss_pred             ccCCceeEEecCccc
Q psy5757         105 MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~  119 (139)
                      ...+.+|+++.+...
T Consensus        79 ~~~g~id~vi~~Ag~   93 (287)
T PRK06194         79 ERFGAVHLLFNNAGV   93 (287)
T ss_pred             HHcCCCCEEEECCCC
Confidence            123468999998864

>PRK11524 putative methyltransferase; Provisional

Probab=86.13  E-value=0.24  Score=36.73  Aligned_cols=32  Identities=6%  Similarity=0.141  Sum_probs=23.5

Q ss_pred             CcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          85 GHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        85 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      .+..++++|..+.+..    .+.++||+|+++|++.
T Consensus         7 ~~~~i~~gD~~~~l~~----l~~~siDlIitDPPY~   38 (284)
T PRK11524          7 EAKTIIHGDALTELKK----IPSESVDLIFADPPYN   38 (284)
T ss_pred             CCCEEEeccHHHHHHh----cccCcccEEEECCCcc
Confidence            4567889997775443    3457899999999863

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=86.09  E-value=3.9  Score=31.79  Aligned_cols=86  Identities=13%  Similarity=0.104  Sum_probs=50.3

Q ss_pred             EcccCChhHHHHHHHc--CCCceEEEEe---CCHHHHHHHHHHHHh-hccccccCCcEEEEEccchh---hhHHHhhhcc
Q psy5757          36 IGSGSGYLTNMISELM--NSTGQVIGIE---HVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIK---RIETVELMMK  106 (139)
Q Consensus        36 iG~G~G~~~~~l~~~~--~~~~~v~~~d---~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~---~~~~~~~~~~  106 (139)
                      +..+||.++.++...+  ..+++|+|.=   -++.+.+..++.+.. ....-+..+++..+.+|..+   +++...-..=
T Consensus         5 LTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~~~~L   84 (382)
T COG3320           5 LTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERTWQEL   84 (382)
T ss_pred             EecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHHHHHH
Confidence            4567999998887765  3346787765   334455555555541 11011224799999999764   1221111111


Q ss_pred             CCceeEEecCccccc
Q psy5757         107 FDRYDFLPHAPAESW  121 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~  121 (139)
                      .+++|.|+.+.+.++
T Consensus        85 a~~vD~I~H~gA~Vn   99 (382)
T COG3320          85 AENVDLIIHNAALVN   99 (382)
T ss_pred             hhhcceEEecchhhc
Confidence            246999999998544

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=86.01  E-value=3.4  Score=32.17  Aligned_cols=46  Identities=11%  Similarity=0.104  Sum_probs=32.6

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL   75 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~   75 (139)
                      +.++.+||-|.+|......++.....   +|+++|+||..+...+-++.
T Consensus        33 i~~~d~vl~ItSaG~N~L~yL~~~P~---~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   33 IGPDDRVLTITSAGCNALDYLLAGPK---RIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             CCCCCeEEEEccCCchHHHHHhcCCc---eEEEEeCCHHHHHHHHHHHH
Confidence            67889999996655555555444433   99999999987766655544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK07062 short chain dehydrogenase; Provisional

Probab=85.97  E-value=11  Score=27.09  Aligned_cols=86  Identities=12%  Similarity=0.108  Sum_probs=50.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|+ ++..+..+++.+. ...+|+.++.+++.++.+.+.+....    ...++.++..|+.+.  +.++..  
T Consensus         7 ~~k~~lItGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~   81 (265)
T PRK07062          7 EGRVAVVTGG-SSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKF----PGARLLAARCDVLDEADVAAFAAAV   81 (265)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEEecCCCHHHHHHHHHHH
Confidence            4567777775 4555666666552 24489999988877766655544310    013577777787762  112111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        82 ~~~~g~id~li~~Ag~   97 (265)
T PRK07062         82 EARFGGVDMLVNNAGQ   97 (265)
T ss_pred             HHhcCCCCEEEECCCC
Confidence            1134678999888753

>PRK05866 short chain dehydrogenase; Provisional

Probab=85.96  E-value=12  Score=27.66  Aligned_cols=82  Identities=13%  Similarity=0.231  Sum_probs=48.9

Q ss_pred             CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M  104 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~  104 (139)
                      ++++|-.|+ +|..+..+++.+. ...+|+.++.+++.++...+.+...      ..++.++..|+.+.  +..+..  .
T Consensus        40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~------~~~~~~~~~Dl~d~~~v~~~~~~~~  112 (293)
T PRK05866         40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA------GGDAMAVPCDLSDLDAVDALVADVE  112 (293)
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            467777765 5566666666552 2348999999877766655554330      13466777887651  222111  1


Q ss_pred             ccCCceeEEecCcc
Q psy5757         105 MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 ~~~~~~D~vi~~~~  118 (139)
                      ...+.+|+++.+..
T Consensus       113 ~~~g~id~li~~AG  126 (293)
T PRK05866        113 KRIGGVDILINNAG  126 (293)
T ss_pred             HHcCCCCEEEECCC
Confidence            12457899998865

>KOG3201|consensus

Probab=85.90  E-value=0.51  Score=32.55  Aligned_cols=48  Identities=19%  Similarity=0.167  Sum_probs=37.4

Q ss_pred             CCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          28 NENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        28 ~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      ..+.+|+|+|.| +|-.+.++|... +...|.-.|-+++.++..++..-.
T Consensus        28 ~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~   76 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNS   76 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhc
Confidence            356899999999 666666777666 456999999999999888776644

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=85.71  E-value=2.8  Score=34.75  Aligned_cols=71  Identities=14%  Similarity=0.180  Sum_probs=43.3

Q ss_pred             CeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      .+++-+|  .|..+..+++.... .-.++.+|.|++.++.+++            ....++.+|..+ .+-+ ..+..++
T Consensus       401 ~~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~------------~g~~v~~GDat~-~~~L-~~agi~~  464 (621)
T PRK03562        401 PRVIIAG--FGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK------------FGMKVFYGDATR-MDLL-ESAGAAK  464 (621)
T ss_pred             CcEEEEe--cChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh------------cCCeEEEEeCCC-HHHH-HhcCCCc
Confidence            4566654  55566666665422 2379999999998887754            234578888776 2222 2234456


Q ss_pred             eeEEecCc
Q psy5757         110 YDFLPHAP  117 (139)
Q Consensus       110 ~D~vi~~~  117 (139)
                      .|++++.-
T Consensus       465 A~~vvv~~  472 (621)
T PRK03562        465 AEVLINAI  472 (621)
T ss_pred             CCEEEEEe
Confidence            66665543

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=85.64  E-value=3.7  Score=33.86  Aligned_cols=70  Identities=14%  Similarity=0.080  Sum_probs=44.7

Q ss_pred             eEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCce
Q psy5757          32 KVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRY  110 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~  110 (139)
                      +++-  ||.|..+..+++... ..-+++.+|.|++.++.+++            ....++.+|..+ .+-+ ..+..++.
T Consensus       402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~------------~g~~v~~GDat~-~~~L-~~agi~~A  465 (601)
T PRK03659        402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK------------YGYKVYYGDATQ-LELL-RAAGAEKA  465 (601)
T ss_pred             CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh------------CCCeEEEeeCCC-HHHH-HhcCCccC
Confidence            4544  667777777777653 23489999999998887754            234578888776 2222 23345566


Q ss_pred             eEEecCc
Q psy5757         111 DFLPHAP  117 (139)
Q Consensus       111 D~vi~~~  117 (139)
                      |+++..-
T Consensus       466 ~~vv~~~  472 (601)
T PRK03659        466 EAIVITC  472 (601)
T ss_pred             CEEEEEe
Confidence            7665544

>PRK06172 short chain dehydrogenase; Provisional

Probab=85.46  E-value=11  Score=26.78  Aligned_cols=84  Identities=12%  Similarity=0.171  Sum_probs=50.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +++.+|-.|+ +|..+..+++.+. ...+|+.++-++..++.+.+.+...      ..++.++..|+.+.  +..+..  
T Consensus         6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~i~~~~~~~   78 (253)
T PRK06172          6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA------GGEALFVACDVTRDAEVKALVEQT   78 (253)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHHH
Confidence            4567888775 5566666665552 2348999998877666555554431      14678888887752  111111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+++|+++++...
T Consensus        79 ~~~~g~id~li~~ag~   94 (253)
T PRK06172         79 IAAYGRLDYAFNNAGI   94 (253)
T ss_pred             HHHhCCCCEEEECCCC
Confidence            1123568999988753

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=84.96  E-value=12  Score=26.72  Aligned_cols=83  Identities=14%  Similarity=0.093  Sum_probs=48.4

Q ss_pred             CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--hc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--MM  105 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~  105 (139)
                      +.+|-.| |+|..+..+++.+. ...+++.++.++...+...+.+....    ...++.++..|+.+.  +.++..  ..
T Consensus         3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~i~~~~~~~~~   77 (259)
T PRK12384          3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY----GEGMAYGFGADATSEQSVLALSRGVDE   77 (259)
T ss_pred             CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc----CCceeEEEEccCCCHHHHHHHHHHHHH
Confidence            4677777 56777777766552 23488999988766655544433210    013577888887751  111111  11


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ..+.+|+++.+..
T Consensus        78 ~~~~id~vv~~ag   90 (259)
T PRK12384         78 IFGRVDLLVYNAG   90 (259)
T ss_pred             HcCCCCEEEECCC
Confidence            2356899988875

>PRK07063 short chain dehydrogenase; Provisional

Probab=84.64  E-value=12  Score=26.67  Aligned_cols=85  Identities=12%  Similarity=0.094  Sum_probs=50.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|-.|++ |..+..+++.+- ...+|+.++.+++.++...+.+.. +.     ..++.++..|+.+.  +..+.. 
T Consensus         6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~   79 (260)
T PRK07063          6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVA-----GARVLAVPADVTDAASVAAAVAA   79 (260)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC-----CceEEEEEccCCCHHHHHHHHHH
Confidence            45678877754 555666666552 234888999887777666555543 11     24677888887652  111111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|+++.+...
T Consensus        80 ~~~~~g~id~li~~ag~   96 (260)
T PRK07063         80 AEEAFGPLDVLVNNAGI   96 (260)
T ss_pred             HHHHhCCCcEEEECCCc
Confidence             1124578999988753

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=84.64  E-value=3.3  Score=31.84  Aligned_cols=46  Identities=22%  Similarity=0.429  Sum_probs=37.0

Q ss_pred             CCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          27 LNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        27 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      +.++.+||..|+|. |..+..+++..+. .++++++.+++..+.+++.
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc
Confidence            56788999999887 7788888888753 3699999999888877764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=84.56  E-value=12  Score=26.62  Aligned_cols=79  Identities=16%  Similarity=0.180  Sum_probs=47.1

Q ss_pred             CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M  104 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~  104 (139)
                      ++.+|-.| |+|.++..+++.+. ...+|+.++.+++..+...+.+.         .++.++..|+.+.  +..+..  .
T Consensus         6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~~   75 (257)
T PRK07067          6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG---------PAAIAVSLDVTRQDSIDRIVAAAV   75 (257)
T ss_pred             CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC---------CceEEEEccCCCHHHHHHHHHHHH
Confidence            45677666 56677777776652 23488999888766555433321         3567777787651  221111  1


Q ss_pred             ccCCceeEEecCcc
Q psy5757         105 MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 ~~~~~~D~vi~~~~  118 (139)
                      ...+.+|+++.+..
T Consensus        76 ~~~~~id~li~~ag   89 (257)
T PRK07067         76 ERFGGIDILFNNAA   89 (257)
T ss_pred             HHcCCCCEEEECCC
Confidence            12356899988765

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.39  E-value=13  Score=26.92  Aligned_cols=85  Identities=12%  Similarity=0.075  Sum_probs=46.0

Q ss_pred             CCCeEEEEcccC-ChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGS-GYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~-G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      +++.+|-.|+++ ++.+.++++.+. ...+|+..+.+....+.+++....       ..+..++..|+.+.  +..+.. 
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~v~~~~~~   77 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQ-------LGSDIVLPCDVAEDASIDAMFAE   77 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhc-------cCCceEeecCCCCHHHHHHHHHH
Confidence            456788888876 366666666552 234777777653222222222111       12345666777651  222111 


Q ss_pred             -hccCCceeEEecCcccc
Q psy5757         104 -MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~~  120 (139)
                       ...++++|++|.|....
T Consensus        78 ~~~~~g~iD~linnAg~~   95 (262)
T PRK07984         78 LGKVWPKFDGFVHSIGFA   95 (262)
T ss_pred             HHhhcCCCCEEEECCccC
Confidence             11356799999998643

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.33  E-value=12  Score=26.86  Aligned_cols=82  Identities=17%  Similarity=0.148  Sum_probs=46.9

Q ss_pred             CCCeEEEEcccC-ChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGS-GYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~-G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|-.|+++ ++.+..+++.+- ...+|+..+.++...+.    +..     +...++.++..|+.+.  ++++.. 
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~----~~~-----~~~~~~~~~~~Dl~~~~~v~~~~~~   76 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKS----LQK-----LVDEEDLLVECDVASDESIERAFAT   76 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHH----HHh-----hccCceeEEeCCCCCHHHHHHHHHH
Confidence            457788888774 567777776662 33478877666332222    222     0014567777887752  222211 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+++|+++.|...
T Consensus        77 ~~~~~g~iD~lv~nAg~   93 (252)
T PRK06079         77 IKERVGKIDGIVHAIAY   93 (252)
T ss_pred             HHHHhCCCCEEEEcccc
Confidence             1134679999998764

>KOG2798|consensus

Probab=84.23  E-value=1.4  Score=33.51  Aligned_cols=56  Identities=16%  Similarity=0.121  Sum_probs=40.0

Q ss_pred             HHHHHHHhcccCCC------CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q psy5757          16 ILTYLSIIQPHLNE------NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI   74 (139)
Q Consensus        16 ~~~~~~~l~~~~~~------~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~   74 (139)
                      ...+++.|..++++      ..+||--|||.|.++..++..+.   ..-|-|.|-.|+-...-.+
T Consensus       131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiL  192 (369)
T KOG2798|consen  131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFIL  192 (369)
T ss_pred             hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHH
Confidence            34466666544433      55899999999999999999885   5666688877765544433

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=84.18  E-value=9.5  Score=25.07  Aligned_cols=82  Identities=16%  Similarity=0.199  Sum_probs=46.9

Q ss_pred             eEEEEcccCChhHHHHHHHcCCC--ceEEEEeCC--HHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          32 KVLEIGSGSGYLTNMISELMNST--GQVIGIEHV--PQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~~~--~~v~~~d~~--~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .+|-.|++ +..+..+++.+-.+  .+++.+.-+  .+..+.....+...      ..++.++..|+.+.  +..+..  
T Consensus         2 ~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~   74 (167)
T PF00106_consen    2 TVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP------GAKITFIECDLSDPESIRALIEEV   74 (167)
T ss_dssp             EEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT------TSEEEEEESETTSHHHHHHHHHHH
T ss_pred             EEEEECCC-CHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc------cccccccccccccccccccccccc
Confidence            35555544 56666666655222  267777777  45555554444431      26788888887751  222111  


Q ss_pred             hccCCceeEEecCcccc
Q psy5757         104 MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~~  120 (139)
                      ......+|++|.+....
T Consensus        75 ~~~~~~ld~li~~ag~~   91 (167)
T PF00106_consen   75 IKRFGPLDILINNAGIF   91 (167)
T ss_dssp             HHHHSSESEEEEECSCT
T ss_pred             ccccccccccccccccc
Confidence            12346799999887643

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK12829 short chain dehydrogenase; Provisional

Probab=84.11  E-value=13  Score=26.52  Aligned_cols=82  Identities=13%  Similarity=0.155  Sum_probs=48.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM  104 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~  104 (139)
                      .+++++|-.|+ +|..+..+++.+- ...+|++++.+++..+...+....        .++.++..|+.+.  +.++...
T Consensus         9 ~~~~~vlItGa-~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~   79 (264)
T PRK12829          9 LDGLRVLVTGG-ASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG--------AKVTATVADVADPAQVERVFDT   79 (264)
T ss_pred             cCCCEEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--------CceEEEEccCCCHHHHHHHHHH
Confidence            45678888776 4666777766652 234889999887655544333322        2567777787651  1111111


Q ss_pred             --ccCCceeEEecCcc
Q psy5757         105 --MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 --~~~~~~D~vi~~~~  118 (139)
                        .....+|.|+.+..
T Consensus        80 ~~~~~~~~d~vi~~ag   95 (264)
T PRK12829         80 AVERFGGLDVLVNNAG   95 (264)
T ss_pred             HHHHhCCCCEEEECCC
Confidence              11245899988765

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=84.02  E-value=6.2  Score=30.89  Aligned_cols=76  Identities=14%  Similarity=0.285  Sum_probs=46.2

Q ss_pred             CeEEEEcccCChhHHHHHHHcCC--CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNS--TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~--~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      ++||-|||  |..+..++.....  ..+|+..|-+.+.++.+.....         .+++....|+.+ .+.+..-  ..
T Consensus         2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~vD~~d-~~al~~l--i~   67 (389)
T COG1748           2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQVDAAD-VDALVAL--IK   67 (389)
T ss_pred             CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEEecccC-hHHHHHH--Hh
Confidence            57899999  5555555554321  2599999999877777655431         366677777655 2222111  12


Q ss_pred             ceeEEecCcccc
Q psy5757         109 RYDFLPHAPAES  120 (139)
Q Consensus       109 ~~D~vi~~~~~~  120 (139)
                      .+|+||+..+.+
T Consensus        68 ~~d~VIn~~p~~   79 (389)
T COG1748          68 DFDLVINAAPPF   79 (389)
T ss_pred             cCCEEEEeCCch
Confidence            358888777643

>KOG1205|consensus

Probab=83.98  E-value=9.8  Score=28.47  Aligned_cols=84  Identities=17%  Similarity=0.227  Sum_probs=52.4

Q ss_pred             CCCeEEEEcccCCh---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHh--
Q psy5757          29 ENSKVLEIGSGSGY---LTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVE--  102 (139)
Q Consensus        29 ~~~~iLdiG~G~G~---~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~--  102 (139)
                      .++.||-=||.+|.   ++..++++..   +++-+--..+-++...+.+.. .-     ..++..+..|+.+ ..+..  
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~---~l~lvar~~rrl~~v~~~l~~~~~-----~~~v~~~~~Dvs~-~~~~~~~   81 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA---KLVLVARRARRLERVAEELRKLGS-----LEKVLVLQLDVSD-EESVKKF   81 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC---ceEEeehhhhhHHHHHHHHHHhCC-----cCccEEEeCccCC-HHHHHHH
Confidence            45677877887773   4444444443   666666666667776555554 21     1258899999887 22221  


Q ss_pred             ---hhccCCceeEEecCccccc
Q psy5757         103 ---LMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus       103 ---~~~~~~~~D~vi~~~~~~~  121 (139)
                         ....++.+|+++.|.-+..
T Consensus        82 ~~~~~~~fg~vDvLVNNAG~~~  103 (282)
T KOG1205|consen   82 VEWAIRHFGRVDVLVNNAGISL  103 (282)
T ss_pred             HHHHHHhcCCCCEEEecCcccc
Confidence               1235788999999986443

>PRK07074 short chain dehydrogenase; Provisional

Probab=83.86  E-value=12  Score=26.55  Aligned_cols=78  Identities=10%  Similarity=0.121  Sum_probs=45.3

Q ss_pred             CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHh---h--h
Q psy5757          31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVE---L--M  104 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~---~--~  104 (139)
                      +++|-.|+ +|..+..+++.+. ...+++.++.++...+...+.+..        .+++++..|+.+ .+.+.   .  .
T Consensus         3 k~ilItGa-t~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~D~~~-~~~~~~~~~~~~   72 (257)
T PRK07074          3 RTALVTGA-AGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGD--------ARFVPVACDLTD-AASLAAALANAA   72 (257)
T ss_pred             CEEEEECC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC--------CceEEEEecCCC-HHHHHHHHHHHH
Confidence            45666665 4556777666552 234899999887655544333322        457777888765 22211   0  1


Q ss_pred             ccCCceeEEecCcc
Q psy5757         105 MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 ~~~~~~D~vi~~~~  118 (139)
                      ...+.+|+++.+..
T Consensus        73 ~~~~~~d~vi~~ag   86 (257)
T PRK07074         73 AERGPVDVLVANAG   86 (257)
T ss_pred             HHcCCCCEEEECCC
Confidence            12345899988875

>PRK05872 short chain dehydrogenase; Provisional

Probab=83.73  E-value=12  Score=27.50  Aligned_cols=83  Identities=7%  Similarity=0.086  Sum_probs=47.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +++.+|-.| |+|..+..+++.+. ...+|+.++.+++.++...+.+..       ..++..+..|+.+.  ..++..  
T Consensus         8 ~gk~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-------~~~~~~~~~Dv~d~~~v~~~~~~~   79 (296)
T PRK05872          8 AGKVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-------DDRVLTVVADVTDLAAMQAAAEEA   79 (296)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-------CCcEEEEEecCCCHHHHHHHHHHH
Confidence            456777666 45566666666552 234888899887766655444322       13445555676651  111111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.|.-.
T Consensus        80 ~~~~g~id~vI~nAG~   95 (296)
T PRK05872         80 VERFGGIDVVVANAGI   95 (296)
T ss_pred             HHHcCCCCEEEECCCc
Confidence            1123578999988764

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.60  E-value=13  Score=26.19  Aligned_cols=83  Identities=17%  Similarity=0.209  Sum_probs=48.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-  104 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-  104 (139)
                      +++++|-.|+ +|..+..+++.+- ...+|+.++-++...+.....+..       ..++.++..|+.+.  +..+... 
T Consensus         4 ~~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~   75 (251)
T PRK07231          4 EGKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-------GGRAIAVAADVSDEADVEAAVAAA   75 (251)
T ss_pred             CCcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-------CCeEEEEECCCCCHHHHHHHHHHH
Confidence            3456777664 5566666665542 234899999987666555444332       13577888887751  1111110 


Q ss_pred             -ccCCceeEEecCccc
Q psy5757         105 -MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 -~~~~~~D~vi~~~~~  119 (139)
                       ...+.+|++|.+...
T Consensus        76 ~~~~~~~d~vi~~ag~   91 (251)
T PRK07231         76 LERFGSVDILVNNAGT   91 (251)
T ss_pred             HHHhCCCCEEEECCCC
Confidence             123568999988753

>PRK08219 short chain dehydrogenase; Provisional

Probab=83.41  E-value=11  Score=26.05  Aligned_cols=76  Identities=13%  Similarity=0.152  Sum_probs=43.8

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhh-hccCCc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVEL-MMKFDR  109 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~~~~  109 (139)
                      +++|-.|+ +|..+..+++.+-.+.+|++++.++...+...+..          .+++++.+|+.+ ...+.. -...+.
T Consensus         4 ~~vlVtG~-~g~iG~~l~~~l~~~~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~D~~~-~~~~~~~~~~~~~   71 (227)
T PRK08219          4 PTALITGA-SRGIGAAIARELAPTHTLLLGGRPAERLDELAAEL----------PGATPFPVDLTD-PEAIAAAVEQLGR   71 (227)
T ss_pred             CEEEEecC-CcHHHHHHHHHHHhhCCEEEEeCCHHHHHHHHHHh----------ccceEEecCCCC-HHHHHHHHHhcCC
Confidence            46776665 56666666665422258999998865544332221          356778888776 222211 111235


Q ss_pred             eeEEecCcc
Q psy5757         110 YDFLPHAPA  118 (139)
Q Consensus       110 ~D~vi~~~~  118 (139)
                      +|.++.+..
T Consensus        72 id~vi~~ag   80 (227)
T PRK08219         72 LDVLVHNAG   80 (227)
T ss_pred             CCEEEECCC
Confidence            888887764

>PRK07109 short chain dehydrogenase; Provisional

Probab=83.36  E-value=16  Score=27.56  Aligned_cols=83  Identities=10%  Similarity=0.054  Sum_probs=49.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +++.+|-.| |+|..+..+++.+. ...+|+.++-+++.++...+.+..     . ..++.++..|+.+.  +..+..  
T Consensus         7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~-----~-g~~~~~v~~Dv~d~~~v~~~~~~~   79 (334)
T PRK07109          7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRA-----A-GGEALAVVADVADAEAVQAAADRA   79 (334)
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-----c-CCcEEEEEecCCCHHHHHHHHHHH
Confidence            345677766 45666666666552 234888888888777666555543     0 13577788887761  222111  


Q ss_pred             hccCCceeEEecCcc
Q psy5757         104 MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~  118 (139)
                      ....+.+|++|.|..
T Consensus        80 ~~~~g~iD~lInnAg   94 (334)
T PRK07109         80 EEELGPIDTWVNNAM   94 (334)
T ss_pred             HHHCCCCCEEEECCC
Confidence            112457899988875

>PLN02253 xanthoxin dehydrogenase

Probab=83.27  E-value=13  Score=26.86  Aligned_cols=83  Identities=13%  Similarity=0.162  Sum_probs=48.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~  103 (139)
                      .++++|-.| |+|..+..+++.+. ...+|+.++.++...+...+.+..       ..++.++..|+.+.  +..+.  .
T Consensus        17 ~~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~d~~~~~~~~~~~   88 (280)
T PLN02253         17 LGKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG-------EPNVCFFHCDVTVEDDVSRAVDFT   88 (280)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-------CCceEEEEeecCCHHHHHHHHHHH
Confidence            456777666 56677777776552 234888888876655444333321       24677888887762  11111  1


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+++|+++.+...
T Consensus        89 ~~~~g~id~li~~Ag~  104 (280)
T PLN02253         89 VDKFGTLDIMVNNAGL  104 (280)
T ss_pred             HHHhCCCCEEEECCCc
Confidence            1123568999988753

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.23  E-value=15  Score=26.49  Aligned_cols=83  Identities=8%  Similarity=0.003  Sum_probs=47.1

Q ss_pred             CCCeEEEEcccC-ChhHHHHHHHcC-CCceEEEEeCCH---HHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHH
Q psy5757          29 ENSKVLEIGSGS-GYLTNMISELMN-STGQVIGIEHVP---QLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETV  101 (139)
Q Consensus        29 ~~~~iLdiG~G~-G~~~~~l~~~~~-~~~~v~~~d~~~---~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~  101 (139)
                      .++.+|-.|+++ +..+..+++.+. ...+|+..+.+.   +.++...+...        ..++.++..|+.+.  .+.+
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~~Dv~d~~~v~~~   77 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--------GQESLLLPCDVTSDEEITAC   77 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--------CCceEEEecCCCCHHHHHHH
Confidence            467888888873 777777777663 234777665432   22222222211        14566777887752  2222


Q ss_pred             hh--hccCCceeEEecCccc
Q psy5757         102 EL--MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       102 ~~--~~~~~~~D~vi~~~~~  119 (139)
                      ..  ....+++|+++.|...
T Consensus        78 ~~~~~~~~g~ld~lv~nag~   97 (257)
T PRK08594         78 FETIKEEVGVIHGVAHCIAF   97 (257)
T ss_pred             HHHHHHhCCCccEEEECccc
Confidence            11  1234679999988653

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=83.22  E-value=7.3  Score=31.63  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=35.0

Q ss_pred             CCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          28 NENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        28 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++.+|+-+|+|. |..+...++..+.  +|+++|.+++.++.+++
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aes  206 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVES  206 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH
Confidence            4678999999995 5566677777764  89999999998888876

>PRK06914 short chain dehydrogenase; Provisional

Probab=83.15  E-value=15  Score=26.54  Aligned_cols=82  Identities=13%  Similarity=0.181  Sum_probs=48.3

Q ss_pred             CCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHh----h
Q psy5757          30 NSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVE----L  103 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~----~  103 (139)
                      ++.+|-.| |+|..+..+++.+ ....+|++++-+++..+...+.... +.     ..+++++..|+.+ .+.+.    .
T Consensus         3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~d-~~~~~~~~~~   75 (280)
T PRK06914          3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNL-----QQNIKVQQLDVTD-QNSIHNFQLV   75 (280)
T ss_pred             CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCceeEEecCCCC-HHHHHHHHHH
Confidence            34566666 5566667666654 2234888888887666555444333 11     2468888888876 22211    1


Q ss_pred             hccCCceeEEecCcc
Q psy5757         104 MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~  118 (139)
                      ....+.+|+++.+..
T Consensus        76 ~~~~~~id~vv~~ag   90 (280)
T PRK06914         76 LKEIGRIDLLVNNAG   90 (280)
T ss_pred             HHhcCCeeEEEECCc
Confidence            112356899988864

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=83.12  E-value=15  Score=27.31  Aligned_cols=84  Identities=11%  Similarity=-0.013  Sum_probs=48.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-  104 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-  104 (139)
                      .++.+|-.|+ +|..+..+++.+- ...+|+.++-+++..+.+.+.+...      ..++.++..|+.+.  +..+... 
T Consensus         5 ~~k~vlVTGa-s~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~v~~~~~~~   77 (322)
T PRK07453          5 AKGTVIITGA-SSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP------PDSYTIIHIDLGDLDSVRRFVDDF   77 (322)
T ss_pred             CCCEEEEEcC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc------CCceEEEEecCCCHHHHHHHHHHH
Confidence            3556776664 5666666666552 2348888888876655554443221      14677888887651  1211111 


Q ss_pred             -ccCCceeEEecCccc
Q psy5757         105 -MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 -~~~~~~D~vi~~~~~  119 (139)
                       .....+|++|.|...
T Consensus        78 ~~~~~~iD~li~nAg~   93 (322)
T PRK07453         78 RALGKPLDALVCNAAV   93 (322)
T ss_pred             HHhCCCccEEEECCcc
Confidence             123468999988753

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=83.05  E-value=15  Score=26.40  Aligned_cols=84  Identities=8%  Similarity=0.033  Sum_probs=49.4

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++++|-.|++. ..+..+++.+ ....+++..+.+++.++.+...+...      ..++.++..|+.+.  +.++..  
T Consensus         9 ~~k~~lItGa~~-~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~   81 (265)
T PRK07097          9 KGKIALITGASY-GIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL------GIEAHGYVCDVTDEDGVQAMVSQI   81 (265)
T ss_pred             CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHHH
Confidence            556788777654 4455555443 12347888888877766665555441      13577888887752  122111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++++...
T Consensus        82 ~~~~~~id~li~~ag~   97 (265)
T PRK07097         82 EKEVGVIDILVNNAGI   97 (265)
T ss_pred             HHhCCCCCEEEECCCC
Confidence            1123568999988763

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=83.04  E-value=14  Score=26.21  Aligned_cols=84  Identities=12%  Similarity=0.136  Sum_probs=51.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .+++++|-.| |+|..+..+++.+ ....+|+.++.+++.++...+.++..      ..++.++..|+.+.  +.++.. 
T Consensus         9 ~~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~   81 (256)
T PRK06124          9 LAGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA------GGAAEALAFDIADEEAVAAAFAR   81 (256)
T ss_pred             CCCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHHH
Confidence            3567888777 4666677766655 22458999999877666655554431      13577888887651  111111 


Q ss_pred             -hccCCceeEEecCcc
Q psy5757         104 -MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~  118 (139)
                       ....+++|.++.+..
T Consensus        82 ~~~~~~~id~vi~~ag   97 (256)
T PRK06124         82 IDAEHGRLDILVNNVG   97 (256)
T ss_pred             HHHhcCCCCEEEECCC
Confidence             112356899998875

>KOG1201|consensus

Probab=82.85  E-value=16  Score=27.53  Aligned_cols=82  Identities=18%  Similarity=0.212  Sum_probs=50.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~  103 (139)
                      .++.||-=|.|+|- ++.++..+ +..++++..|++++......+....       ..+++....|+.+.  +.++.  -
T Consensus        37 ~g~~vLITGgg~Gl-Gr~ialefa~rg~~~vl~Din~~~~~etv~~~~~-------~g~~~~y~cdis~~eei~~~a~~V  108 (300)
T KOG1201|consen   37 SGEIVLITGGGSGL-GRLIALEFAKRGAKLVLWDINKQGNEETVKEIRK-------IGEAKAYTCDISDREEIYRLAKKV  108 (300)
T ss_pred             cCCEEEEeCCCchH-HHHHHHHHHHhCCeEEEEeccccchHHHHHHHHh-------cCceeEEEecCCCHHHHHHHHHHH
Confidence            46677777777663 33333333 2233889999999888888777765       12566666676651  22211  1


Q ss_pred             hccCCceeEEecCcc
Q psy5757         104 MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~  118 (139)
                      ....+.+|+++.|..
T Consensus       109 k~e~G~V~ILVNNAG  123 (300)
T KOG1201|consen  109 KKEVGDVDILVNNAG  123 (300)
T ss_pred             HHhcCCceEEEeccc
Confidence            223567999999886

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=82.65  E-value=19  Score=27.25  Aligned_cols=81  Identities=11%  Similarity=0.140  Sum_probs=47.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..+++||-.| |+|..+..+++.+-. ..+|++++-++.........+..       ..+++++.+|+.+. ..+..-  
T Consensus         8 ~~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~-~~~~~~--   76 (353)
T PLN02896          8 SATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE-------GDRLRLFRADLQEE-GSFDEA--   76 (353)
T ss_pred             cCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc-------CCeEEEEECCCCCH-HHHHHH--
Confidence            5677888776 578888888886632 23788887665433222221111       24688888887762 222111  


Q ss_pred             CCceeEEecCccc
Q psy5757         107 FDRYDFLPHAPAE  119 (139)
Q Consensus       107 ~~~~D~vi~~~~~  119 (139)
                      ...+|+||.....
T Consensus        77 ~~~~d~Vih~A~~   89 (353)
T PLN02896         77 VKGCDGVFHVAAS   89 (353)
T ss_pred             HcCCCEEEECCcc
Confidence            1247888877753

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=82.59  E-value=4.1  Score=30.45  Aligned_cols=72  Identities=13%  Similarity=0.171  Sum_probs=49.8

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .+.+++.-+|+|+..|+.+-.|.++.=   .|+++|.-+ |   |+....        ...++.+..|..+ +.     -
T Consensus       208 rL~~~M~avDLGAcPGGWTyqLVkr~m---~V~aVDng~-m---a~sL~d--------tg~v~h~r~DGfk-~~-----P  266 (358)
T COG2933         208 RLAPGMWAVDLGACPGGWTYQLVKRNM---RVYAVDNGP-M---AQSLMD--------TGQVTHLREDGFK-FR-----P  266 (358)
T ss_pred             hhcCCceeeecccCCCccchhhhhcce---EEEEeccch-h---hhhhhc--------ccceeeeeccCcc-cc-----c
Confidence            357899999999999999999999874   899999764 1   111111        2567777777655 22     0


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      +-..+|..+|..+
T Consensus       267 ~r~~idWmVCDmV  279 (358)
T COG2933         267 TRSNIDWMVCDMV  279 (358)
T ss_pred             CCCCCceEEeehh
Confidence            1345788877765

>PRK07102 short chain dehydrogenase; Provisional

Probab=82.31  E-value=15  Score=25.92  Aligned_cols=81  Identities=9%  Similarity=0.024  Sum_probs=47.2

Q ss_pred             CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhhccC
Q psy5757          31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELMMKF  107 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~  107 (139)
                      ++++-.| |+|..+..+++.+- ...+|+.++.+++..+...+.+...     ...+++++..|..+.  +..+.... .
T Consensus         2 ~~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~-~   74 (243)
T PRK07102          2 KKILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR-----GAVAVSTHELDILDTASHAAFLDSL-P   74 (243)
T ss_pred             cEEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh-----cCCeEEEEecCCCChHHHHHHHHHH-h
Confidence            3567666 56777777766662 2348999998876655444433320     125788888887762  12221111 1


Q ss_pred             CceeEEecCcc
Q psy5757         108 DRYDFLPHAPA  118 (139)
Q Consensus       108 ~~~D~vi~~~~  118 (139)
                      ..+|+++.+..
T Consensus        75 ~~~d~vv~~ag   85 (243)
T PRK07102         75 ALPDIVLIAVG   85 (243)
T ss_pred             hcCCEEEECCc
Confidence            24699987653

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=82.24  E-value=4.6  Score=30.67  Aligned_cols=46  Identities=13%  Similarity=0.206  Sum_probs=36.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      ..+.+|+-+|+|.+....++++...   ++.++|+++.-+..-+-++..
T Consensus        62 g~ghrivtigSGGcn~L~ylsr~Pa---~id~VDlN~ahiAln~lklaA  107 (414)
T COG5379          62 GIGHRIVTIGSGGCNMLAYLSRAPA---RIDVVDLNPAHIALNRLKLAA  107 (414)
T ss_pred             CCCcEEEEecCCcchHHHHhhcCCc---eeEEEeCCHHHHHHHHHHHHH
Confidence            4567999999998888888887654   999999999887766555543

>PRK06197 short chain dehydrogenase; Provisional

Probab=82.10  E-value=18  Score=26.69  Aligned_cols=86  Identities=9%  Similarity=0.089  Sum_probs=50.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.| |+|..+..+++.+. ...+|+.+..+++..+.+.+.+....    ...++.++..|+.+.  +..+..  
T Consensus        15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~d~~~v~~~~~~~   89 (306)
T PRK06197         15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT----PGADVTLQELDLTSLASVRAAADAL   89 (306)
T ss_pred             CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCceEEEECCCCCHHHHHHHHHHH
Confidence            456777665 46666777766552 23478888888766665554443310    014677888887762  111111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.+...
T Consensus        90 ~~~~~~iD~li~nAg~  105 (306)
T PRK06197         90 RAAYPRIDLLINNAGV  105 (306)
T ss_pred             HhhCCCCCEEEECCcc
Confidence            1124568999998864

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.88  E-value=17  Score=26.22  Aligned_cols=85  Identities=14%  Similarity=0.042  Sum_probs=46.2

Q ss_pred             CCCeEEEEcc-cCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGS-GSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~-G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      +++.+|--|+ +++..+..+++.+. ...+|+....+....+.+++.....       .....+..|+.+.  ++++.. 
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~   77 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAEL-------DSELVFRCDVASDDEINQVFAD   77 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhcc-------CCceEEECCCCCHHHHHHHHHH
Confidence            4567888887 46777788877663 2347776655433223333322220       2234566777651  222211 


Q ss_pred             -hccCCceeEEecCcccc
Q psy5757         104 -MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~~  120 (139)
                       ....+.+|+++.|.-..
T Consensus        78 ~~~~~g~iD~lVnnAG~~   95 (261)
T PRK08690         78 LGKHWDGLDGLVHSIGFA   95 (261)
T ss_pred             HHHHhCCCcEEEECCccC
Confidence             11346799999998643

>PRK12939 short chain dehydrogenase; Provisional

Probab=81.85  E-value=15  Score=25.77  Aligned_cols=83  Identities=11%  Similarity=0.083  Sum_probs=50.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-  104 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-  104 (139)
                      +++.+|-.| |+|..+..+++.+. ...+++.++.+++.+....+.++..      ..++.++..|+.+.  +..+... 
T Consensus         6 ~~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~   78 (250)
T PRK12939          6 AGKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA------GGRAHAIAADLADPASVQRFFDAA   78 (250)
T ss_pred             CCCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence            356777665 56777777777662 2347888888877666655554431      14678888887751  1221111 


Q ss_pred             -ccCCceeEEecCcc
Q psy5757         105 -MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 -~~~~~~D~vi~~~~  118 (139)
                       ...+.+|+++.+..
T Consensus        79 ~~~~~~id~vi~~ag   93 (250)
T PRK12939         79 AAALGGLDGLVNNAG   93 (250)
T ss_pred             HHHcCCCCEEEECCC
Confidence             11246899988764

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=81.75  E-value=17  Score=26.07  Aligned_cols=81  Identities=14%  Similarity=0.099  Sum_probs=47.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +++.+|-.|+ +|..+..+++.+. ...+|+.++.+++.++...+..         ..++.++..|+.+.  +..+..  
T Consensus         5 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~   74 (263)
T PRK06200          5 HGQVALITGG-GSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF---------GDHVLVVEGDVTSYADNQRAVDQT   74 (263)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCcceEEEccCCCHHHHHHHHHHH
Confidence            4567777775 4555666555542 2348889998876655443332         13566777777651  121111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.+...
T Consensus        75 ~~~~g~id~li~~ag~   90 (263)
T PRK06200         75 VDAFGKLDCFVGNAGI   90 (263)
T ss_pred             HHhcCCCCEEEECCCC
Confidence            1124578999988764

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=81.58  E-value=17  Score=26.96  Aligned_cols=97  Identities=14%  Similarity=0.136  Sum_probs=67.8

Q ss_pred             ChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEE
Q psy5757          12 GISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVA   91 (139)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~   91 (139)
                      .+......++.+.. +.++.. +..-+||--++..+.+.-.   ++..+|..|.-....++++..       ..++.+..
T Consensus        73 lpa~l~~yl~~i~~-lN~~~~-l~~YpGSP~lA~~llR~qD---Rl~l~ELHp~D~~~L~~~f~~-------d~~vrv~~  140 (279)
T COG2961          73 LPAELEPYLDAVRQ-LNPGGG-LRYYPGSPLLARQLLREQD---RLVLTELHPSDAPLLRNNFAG-------DRRVRVLR  140 (279)
T ss_pred             chHHHHHHHHHHHH-hCCCCC-cccCCCCHHHHHHHcchhc---eeeeeecCccHHHHHHHHhCC-------CcceEEEe
Confidence            34445566666653 444444 7888999999988888775   899999999999999988876       57899999


Q ss_pred             ccchhhhHHHhhhccC-CceeEEecCccccccc
Q psy5757          92 LGMIKRIETVELMMKF-DRYDFLPHAPAESWMN  123 (139)
Q Consensus        92 ~d~~~~~~~~~~~~~~-~~~D~vi~~~~~~~~~  123 (139)
                      +|....+   ....+. ++=-+|+..|+|..-.
T Consensus       141 ~DG~~~l---~a~LPP~erRglVLIDPPfE~~~  170 (279)
T COG2961         141 GDGFLAL---KAHLPPKERRGLVLIDPPFELKD  170 (279)
T ss_pred             cCcHHHH---hhhCCCCCcceEEEeCCCccccc
Confidence            9965433   222222 2346777777766443

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=81.38  E-value=11  Score=23.79  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=27.1

Q ss_pred             cCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          39 GSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        39 G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      |.|..+..+++..+  +++++++.++...+.+++.
T Consensus         1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~   33 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL   33 (130)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh
Confidence            35778889999887  5999999999888887663

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=81.30  E-value=13  Score=26.75  Aligned_cols=82  Identities=11%  Similarity=0.126  Sum_probs=46.9

Q ss_pred             CCCeEEEEccc-CChhHHHHHHHcC-CCceEEEEeCCH--HHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh
Q psy5757          29 ENSKVLEIGSG-SGYLTNMISELMN-STGQVIGIEHVP--QLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE  102 (139)
Q Consensus        29 ~~~~iLdiG~G-~G~~~~~l~~~~~-~~~~v~~~d~~~--~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~  102 (139)
                      .++.+|-.|+| ++..+..+++.+. ...+|+..+.+.  +..+...+.+         ..++.++..|+.+.  +.++.
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~i~~~~   76 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---------PEPAPVLELDVTNEEHLASLA   76 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---------CCCCcEEeCCCCCHHHHHHHH
Confidence            45688888885 6777777777653 234787777553  3333322221         12455677777651  22221


Q ss_pred             h--hccCCceeEEecCccc
Q psy5757         103 L--MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       103 ~--~~~~~~~D~vi~~~~~  119 (139)
                      .  ....+++|+++.|...
T Consensus        77 ~~~~~~~g~iD~li~nAG~   95 (256)
T PRK07889         77 DRVREHVDGLDGVVHSIGF   95 (256)
T ss_pred             HHHHHHcCCCcEEEEcccc
Confidence            1  1134679999988753

>PRK07024 short chain dehydrogenase; Provisional

Probab=81.26  E-value=16  Score=26.10  Aligned_cols=80  Identities=8%  Similarity=0.056  Sum_probs=47.5

Q ss_pred             CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--hc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--MM  105 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~  105 (139)
                      +++|-.|+ +|..+..+++.+. ...+|+.++.+++.++...+.+..       ..++.++..|+.+.  +.+...  ..
T Consensus         3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~i~~~~~~~~~   74 (257)
T PRK07024          3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK-------AARVSVYAADVRDADALAAAAADFIA   74 (257)
T ss_pred             CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc-------CCeeEEEEcCCCCHHHHHHHHHHHHH
Confidence            45666664 6677777777662 234899999887666554443322       12677888887751  221111  11


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ..+.+|+++.+..
T Consensus        75 ~~g~id~lv~~ag   87 (257)
T PRK07024         75 AHGLPDVVIANAG   87 (257)
T ss_pred             hCCCCCEEEECCC
Confidence            2345899998875

>PRK06139 short chain dehydrogenase; Provisional

Probab=81.11  E-value=16  Score=27.63  Aligned_cols=83  Identities=8%  Similarity=0.079  Sum_probs=49.4

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--hhHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--RIETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~--  103 (139)
                      .++.+|-.|+ +|..+..+++.+. ...+|+.++-+++.++...+.+...      ..++.++..|+.+  .+..+..  
T Consensus         6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~------g~~~~~~~~Dv~d~~~v~~~~~~~   78 (330)
T PRK06139          6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL------GAEVLVVPTDVTDADQVKALATQA   78 (330)
T ss_pred             CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeeCCCHHHHHHHHHHH
Confidence            3467776665 5555666655442 2348999998888777666655441      1356667777765  1222211  


Q ss_pred             hccCCceeEEecCcc
Q psy5757         104 MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~  118 (139)
                      ....+.+|++|.|.-
T Consensus        79 ~~~~g~iD~lVnnAG   93 (330)
T PRK06139         79 ASFGGRIDVWVNNVG   93 (330)
T ss_pred             HHhcCCCCEEEECCC
Confidence            112356899998875

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=81.04  E-value=19  Score=29.72  Aligned_cols=87  Identities=9%  Similarity=0.033  Sum_probs=50.2

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hcccc--ccCCcEEEEEccchhhhHHHhh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARL--LTDGHIKFVALGMIKRIETVEL  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~--~~~~~i~~~~~d~~~~~~~~~~  103 (139)
                      +.++.+|-.| |+|.++..+++.+ ....+|+++..+++......+.+.. .+...  ....+++++.+|+.+ ...+..
T Consensus        78 ~~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD-~esI~~  155 (576)
T PLN03209         78 KDEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK-PDQIGP  155 (576)
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC-HHHHHH
Confidence            4566777665 4677788777765 2234788888887665544333221 10000  001358889999876 333322


Q ss_pred             hccCCceeEEecCcc
Q psy5757         104 MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~  118 (139)
                        ..+.+|+||++..
T Consensus       156 --aLggiDiVVn~AG  168 (576)
T PLN03209        156 --ALGNASVVICCIG  168 (576)
T ss_pred             --HhcCCCEEEEccc
Confidence              2345899888754

>PRK08264 short chain dehydrogenase; Validated

Probab=80.83  E-value=13  Score=26.08  Aligned_cols=75  Identities=12%  Similarity=0.115  Sum_probs=45.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCC-Cc-eEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNS-TG-QVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM  104 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~-~~-~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~  104 (139)
                      .++++|-.| |+|..+..+++.+.. .. +|+.++-++...+.      .       ..+++++..|+.+.  +..+.. 
T Consensus         5 ~~~~vlItG-gsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~------~-------~~~~~~~~~D~~~~~~~~~~~~-   69 (238)
T PRK08264          5 KGKVVLVTG-ANRGIGRAFVEQLLARGAAKVYAAARDPESVTD------L-------GPRVVPLQLDVTDPASVAAAAE-   69 (238)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCcccEEEEecChhhhhh------c-------CCceEEEEecCCCHHHHHHHHH-
Confidence            446777776 577777777776632 33 78888776543322      1       14677888887651  222211 


Q ss_pred             ccCCceeEEecCccc
Q psy5757         105 MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~  119 (139)
                       ....+|++|++...
T Consensus        70 -~~~~id~vi~~ag~   83 (238)
T PRK08264         70 -AASDVTILVNNAGI   83 (238)
T ss_pred             -hcCCCCEEEECCCc
Confidence             13458999888865

>PRK09072 short chain dehydrogenase; Provisional

Probab=80.83  E-value=18  Score=25.88  Aligned_cols=83  Identities=12%  Similarity=0.210  Sum_probs=48.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-  104 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-  104 (139)
                      +++.+|-.|++ |..+..+++.+ ....+|+.++.+++.++...+.+..       ..++.++..|+.+.  +..+... 
T Consensus         4 ~~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~~~   75 (263)
T PRK09072          4 KDKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPY-------PGRHRWVVADLTSEAGREAVLARA   75 (263)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhc-------CCceEEEEccCCCHHHHHHHHHHH
Confidence            34567777654 55666655544 2234899999887776665544422       24677888887651  1111111 


Q ss_pred             ccCCceeEEecCccc
Q psy5757         105 MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~  119 (139)
                      ...+.+|+++.+...
T Consensus        76 ~~~~~id~lv~~ag~   90 (263)
T PRK09072         76 REMGGINVLINNAGV   90 (263)
T ss_pred             HhcCCCCEEEECCCC
Confidence            113568999888653

>PRK05650 short chain dehydrogenase; Provisional

Probab=80.54  E-value=19  Score=25.93  Aligned_cols=80  Identities=9%  Similarity=0.056  Sum_probs=46.4

Q ss_pred             eEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--hcc
Q psy5757          32 KVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--MMK  106 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~~  106 (139)
                      ++|-.| |+|..+..+++.+- ...+|+.++.+++..+.+...+...      ..++.++..|+.+.  +..+..  ...
T Consensus         2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~i~~~   74 (270)
T PRK05650          2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA------GGDGFYQRCDVRDYSQLTALAQACEEK   74 (270)
T ss_pred             EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            466555 46666666666552 2348888888876666555544431      14577778887651  111111  112


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      .+.+|++|.+..
T Consensus        75 ~~~id~lI~~ag   86 (270)
T PRK05650         75 WGGIDVIVNNAG   86 (270)
T ss_pred             cCCCCEEEECCC
Confidence            346899998875

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=80.52  E-value=20  Score=26.13  Aligned_cols=84  Identities=15%  Similarity=0.089  Sum_probs=45.7

Q ss_pred             CCCeEEEEccc-CChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--hhHHHhh-
Q psy5757          29 ENSKVLEIGSG-SGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--RIETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G-~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~-  103 (139)
                      .++.+|-.|++ ++..+..+++.+. ...+|+....++...+.+++....     +  .....+..|+.+  ..+.+.. 
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~-----~--~~~~~~~~Dl~~~~~v~~~~~~   81 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAE-----L--GAFVAGHCDVTDEASIDAVFET   81 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHh-----c--CCceEEecCCCCHHHHHHHHHH
Confidence            45678888886 4677777777662 234776665443222323222222     1  223456677765  1222211 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|+++.|...
T Consensus        82 ~~~~~g~iD~lv~nAG~   98 (272)
T PRK08159         82 LEKKWGKLDFVVHAIGF   98 (272)
T ss_pred             HHHhcCCCcEEEECCcc
Confidence             1234679999998754

>KOG1253|consensus

Probab=80.50  E-value=1.2  Score=35.73  Aligned_cols=83  Identities=17%  Similarity=0.116  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||.=|++|.-++..+...+--.++++.|.++..+..-+++... +.     .+.++..+.|+...+  +.....
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----~~ive~~~~DA~~lM--~~~~~~  180 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----EDIVEPHHSDANVLM--YEHPMV  180 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----hhhcccccchHHHHH--Hhcccc
Confidence            4556899999999999999999886455899999999999999999887 33     344556666754322  222333


Q ss_pred             CCceeEEecCc
Q psy5757         107 FDRYDFLPHAP  117 (139)
Q Consensus       107 ~~~~D~vi~~~  117 (139)
                      ...||+|=..|
T Consensus       181 ~~~FDvIDLDP  191 (525)
T KOG1253|consen  181 AKFFDVIDLDP  191 (525)
T ss_pred             ccccceEecCC
Confidence            46788885544

>PRK05876 short chain dehydrogenase; Provisional

Probab=80.42  E-value=20  Score=26.13  Aligned_cols=84  Identities=6%  Similarity=-0.009  Sum_probs=49.3

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|+ +|..+..+++.+. ...+|+..+.+++.++.+.+.+...      ..++.++..|+.+.  +..+..  
T Consensus         5 ~~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~~~   77 (275)
T PRK05876          5 PGRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE------GFDVHGVMCDVRHREEVTHLADEA   77 (275)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEeCCCCCHHHHHHHHHHH
Confidence            4566776665 5666666666552 2348888888877666555444330      13577778887651  111111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.|...
T Consensus        78 ~~~~g~id~li~nAg~   93 (275)
T PRK05876         78 FRLLGHVDVVFSNAGI   93 (275)
T ss_pred             HHHcCCCCEEEECCCc
Confidence            1123568999988753

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=80.25  E-value=19  Score=25.68  Aligned_cols=84  Identities=11%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~  103 (139)
                      .++.+|-.|+ +|..+..+++.+ ....+++.++.+++..+.+...+...      ..++.++..|+.+.  +.++.  .
T Consensus        10 ~~k~vlVtG~-s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~i~~~~~~~   82 (255)
T PRK06113         10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------GGQAFACRCDITSEQELSALADFA   82 (255)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence            4678888885 455555555544 22347888887777666555544330      13566777887752  11111  1


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.+...
T Consensus        83 ~~~~~~~d~li~~ag~   98 (255)
T PRK06113         83 LSKLGKVDILVNNAGG   98 (255)
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1123568999888763

>PRK07576 short chain dehydrogenase; Provisional

Probab=80.05  E-value=20  Score=25.84  Aligned_cols=83  Identities=14%  Similarity=0.161  Sum_probs=48.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-  104 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-  104 (139)
                      +++++|-.| |+|..+..+++.+. ...+|+.++.+++.++...+.+...      ..++.++..|+.+.  +..+... 
T Consensus         8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~i~~~~~~~   80 (264)
T PRK07576          8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA------GPEGLGVSADVRDYAAVEAAFAQI   80 (264)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCceEEEECCCCCHHHHHHHHHHH
Confidence            456787776 56677776666552 2348999998877665554444331      13566777787651  1111111 


Q ss_pred             -ccCCceeEEecCcc
Q psy5757         105 -MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 -~~~~~~D~vi~~~~  118 (139)
                       .....+|++|.+..
T Consensus        81 ~~~~~~iD~vi~~ag   95 (264)
T PRK07576         81 ADEFGPIDVLVSGAA   95 (264)
T ss_pred             HHHcCCCCEEEECCC
Confidence             12346899998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
1i1n_A	226	Human Protein L-Isoaspartate O-Methyltransferase Wi		3e-11
1r18_A	227	Drosophila Protein Isoaspartyl Methyltransferase Wi		3e-06
2pbf_A	227	Crystal Structure Of A Putative Protein-L-Isoaspart		3e-05
2yxe_A	215	Crystal Structure Of L-Isoaspartyl Protein Carboxyl		2e-04

>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S- Adenosyl Homocysteine Length = 226

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 47/71 (66%)
Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L ++   L+E +K L++GSGSG LT   + ++  TG+VIGI+H+ +LV+ S+ N+   + 
Sbjct: 68  LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP 127
Query: 80  RLLTDGHIKFV 90
            LL+ G ++ V
Sbjct: 128 TLLSSGRVQLV 138

>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With S-Adenosyl-L- Homocysteine Length = 227

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-----QVIGIEHVPQLVNSSIQNI 74
           L  ++ HL   +++L++GSGSGYLT      + + G     +++GIEH  +LV  S  N+
Sbjct: 75  LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANL 134
Query: 75  LHSNARLLTDGHIKFV 90
              +  +L  G +  V
Sbjct: 135 NTDDRSMLDSGQLLIV 150

>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O- Methyltransferase Beta-Aspartate Methyltransferase (Pcmt) From Plasmodium Falciparum In Complex With S-Adenosyl-L-Homocysteine Length = 227

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 27  LNENSKVLEIGSGSGYLTNMISELMN----STGQVIGIEHVPQLVNSSIQNILHSNARLL 82
           L   S+ +++GSGSGYLT  ++  MN        VIG+E V  LVN S++NI      LL
Sbjct: 78  LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELL 137
Query: 83  TDGHIKFV 90
              + K +
Sbjct: 138 KIDNFKII 145

>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl Methyltranferase Length = 215

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 27  LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSS---IQNILHSNARLLT 83
           L    KVLEIG+G GY   + +E++   G V+ IE +P+L   +   ++ + + N  ++ 
Sbjct: 75  LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIV 134
Query: 84  -DGHIKFVALGMIKRIET 100
            DG + +  L    RI T
Sbjct: 135 GDGTLGYEPLAPYDRIYT 152

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	7e-20
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	2e-17
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	6e-17
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	1e-13
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	6e-13
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	6e-13
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	1e-11
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	3e-10
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	2e-07
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	1e-06
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	3e-06
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	2e-05
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	2e-05
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	3e-05
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	4e-05
2b25_A	336	Hypothetical protein; structural genomics, methyl	5e-05
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	5e-05
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	5e-05
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	9e-05
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-04
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	2e-04
3cc8_A	230	Putative methyltransferase; structural genomics, j	3e-04
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	5e-04
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	5e-04
3f4k_A	257	Putative methyltransferase; structural genomics, P	5e-04
3i9f_A	170	Putative type 11 methyltransferase; structural gen	6e-04
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	7e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	7e-04
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	8e-04

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Length = 226

 Score = 80.7 bits (200), Expect = 7e-20
 Identities = 27/71 (38%), Positives = 47/71 (66%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L ++   L+E +K L++GSGSG LT   + ++  TG+VIGI+H+ +LV+ S+ N+   + 
Sbjct: 68  LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP 127

Query: 80  RLLTDGHIKFV 90
            LL+ G ++ V
Sbjct: 128 TLLSSGRVQLV 138

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Length = 227

 Score = 74.6 bits (184), Expect = 2e-17
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-----QVIGIEHVPQLVNSSIQNI 74
           L  ++ HL   +++L++GSGSGYLT      + + G     +++GIEH  +LV  S  N+
Sbjct: 75  LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANL 134

Query: 75  LHSNARLLTDGHIKFV 90
              +  +L  G +  V
Sbjct: 135 NTDDRSMLDSGQLLIV 150

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Length = 227

 Score = 73.0 bits (180), Expect = 6e-17
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLT----NMISELMNSTGQVIGIEHVPQLVNSSIQNIL 75
           L  +   L   S+ +++GSGSGYLT      ++ L N    VIG+E V  LVN S++NI 
Sbjct: 71  LKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIK 130

Query: 76  HSNARLLTDGHIKFV 90
                LL   + K +
Sbjct: 131 RDKPELLKIDNFKII 145

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Length = 215

 Score = 63.7 bits (156), Expect = 1e-13
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 10/63 (15%)

Query: 22  IIQPH----------LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
           I   H          L    KVLEIG+G GY   + +E++   G V+ IE +P+L   + 
Sbjct: 60  ISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAE 119

Query: 72  QNI 74
           + +
Sbjct: 120 RTL 122

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235

 Score = 62.3 bits (152), Expect = 6e-13
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 26  HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
           +L     +LE+G+GSG+   +ISE++     V  IE +P+LV  + +N+
Sbjct: 88  NLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNL 134

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317

 Score = 63.2 bits (154), Expect = 6e-13
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 10/64 (15%)

Query: 21  SIIQPH----------LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSS 70
           +  QP           L++  +VLEIG G+GY   ++S ++   G V+ +E+  ++   +
Sbjct: 57  TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIA 116

Query: 71  IQNI 74
            +N+
Sbjct: 117 KRNV 120

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 15/76 (19%)

Query: 22  IIQPH----------LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
               +          L++  KVLEIG+G GY T +I+E+     +V+ +E   ++ N + 
Sbjct: 53  TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI---VDKVVSVEINEKMYNYAS 109

Query: 72  QNIL-HSNARLLT-DG 85
           + +  ++N +L+  DG
Sbjct: 110 KLLSYYNNIKLILGDG 125

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 13/63 (20%)

Query: 22  IIQPH----------LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
           I QP+          L   S+VLEIG+GSGY T +++ L      V  +E +  L   + 
Sbjct: 60  ISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQAR 116

Query: 72  QNI 74
           + +
Sbjct: 117 RRL 119

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 20  LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
           L +++P       VL++G   G+LT  I+     + +++G++   +L++S+ QNI H   
Sbjct: 37  LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS-RMVGLDIDSRLIHSARQNIRHY-- 93

Query: 80  RLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIP 125
            L  +  +    L      E  E      +    P +   S   I 
Sbjct: 94  -LSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIA 138

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVN 68
           + +   +++ G G GYL  ++  L+    +  GI+    L+ 
Sbjct: 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA 61

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI----LHS 77
           I+  + E   V++   G+G  T  ++ L+   G+V G +   + + ++ + +    L  
Sbjct: 15 YIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLID 74

Query: 78 NARLLTDGH 86
             L+ DGH
Sbjct: 75 RVTLIKDGH 83

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIEHVPQLVNSSIQNI 74
          +   L    P+     +VL+IG G G    +  E     G + IG++    ++       
Sbjct: 28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE----GIESIGVDINEDMIKFCEGKF 83

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARL 81
          I + H  E   ++++G G G  T  +++ +    Q+IG +    ++ ++      S    
Sbjct: 29 IDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY 88

Query: 82 LTDGHIKFV 90
              ++ F 
Sbjct: 89 ---KNVSFK 94

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDG 85
           L E   VL++G+G+G+    +S+++   G+V  I+     V   + N        L   
Sbjct: 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAID-----VQEEMVNYAWEKVNKLGLK 88

Query: 86 HIKFV 90
          +++ +
Sbjct: 89 NVEVL 93

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 14 SAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVN 68
          +  L  L          +KVLE G G G  T ++++  N   ++  I+  P+ + 
Sbjct: 22 AETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLE 75

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 22  IIQPH----------LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
           I  P           +N    VLE GSGSG ++  +S+ + S G+VI  E      + + 
Sbjct: 88  ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAK 147

Query: 72  QNI 74
           +N 
Sbjct: 148 KNY 150

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 17  LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
           L              + + IG G   LT ++   +    +V  +E  P +   S + I
Sbjct: 110 LLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG-MRVNVVEIEPDIAELSRKVI 166

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 40.5 bits (94), Expect = 5e-05
 Identities = 13/64 (20%), Positives = 30/64 (46%)

Query: 27  LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGH 86
             E + VL++G G+G    + S+L+   G+VIG++ +   +  + + + +   +      
Sbjct: 81  SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS 140

Query: 87  IKFV 90
              V
Sbjct: 141 RSNV 144

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 40.0 bits (93), Expect = 9e-05
 Identities = 16/122 (13%), Positives = 38/122 (31%), Gaps = 13/122 (10%)

Query: 13  ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ 72
            S I   L +      E  ++++ G GSG +  +++  + S+G+V   E   +    +  
Sbjct: 101 SSFIAMMLDV-----KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAES 155

Query: 73  NILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTA 132
           N+            ++ ++ G  ++          D        P          +    
Sbjct: 156 NLTKWGLIERVTIKVRDISEGFDEK--------DVDALFLDVPDPWNYIDKCWEALKGGG 207

Query: 133 TM 134
             
Sbjct: 208 RF 209

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 9/41 (21%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
          +   + ++ + ++VL++G G GY T  +S       + +G+
Sbjct: 44 IPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGV 81

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 12/103 (11%)

Query: 6   IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQ 65
               I            I     EN  +L++G+G+G L+  + E          ++    
Sbjct: 21  RRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEK-YPEATFTLVD---- 75

Query: 66  LVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD 108
               S + +  +  R   +  +K++           +   K+D
Sbjct: 76  ---MSEKMLEIAKNRFRGNLKVKYI----EADYSKYDFEEKYD 111

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%)

Query: 17 LTYLSIIQPHL-----NENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIEHVPQLVNSS 70
            Y + + P+L      E  +VL+IG  SG L       +   G +V GIE  P+    +
Sbjct: 15 GHYYNAVNPNLLKHIKKEWKEVLDIGCSSGAL----GAAIKENGTRVSGIEAFPEAAEQA 70

Query: 71 IQNILHSNARLLTDGHIKF 89
           + + H     +    + +
Sbjct: 71 KEKLDHVVLGDIETMDMPY 89

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
          +    K+LEIG G G L+ ++++ + S+G V GI
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI 74

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 37.4 bits (86), Expect = 5e-04
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 5   KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVP 64
           K+ AA+      L         + E  ++L +G  SG   + +S+++   G++ G+E  P
Sbjct: 61  KLAAALLKGLIEL--------PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAP 112

Query: 65  QLV 67
           +++
Sbjct: 113 RVM 115

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
          G   A    +S I   L +++K+ +IG G+G  T  +++ +   GQ+ GI
Sbjct: 29 GSPEATRKAVSFI-NELTDDAKIADIGCGTGGQTLFLADYVK--GQITGI 75

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 5/42 (11%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVN 68
            +   +++ G G+G+    + E      ++  I+     + 
Sbjct: 15 EGKKGVIVDYGCGNGFYCKYLLEF---ATKLYCIDINVIALK 53

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 37.3 bits (86), Expect = 7e-04
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 5/116 (4%)

Query: 27  LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGH 86
           ++    ++E G GSG LT  ++ ++   G+V+  E        + +NI  +         
Sbjct: 91  ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIK 150

Query: 87  IKFVALGMIKRIETVELMMKFDRYDFLPHA-----PAESWMNIPVCINYTATMPEG 137
           +K +  G+ +      ++        + HA     P   ++    C N    + E 
Sbjct: 151 LKDIYEGIEEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEK 206

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 37.4 bits (86), Expect = 7e-04
 Identities = 8/44 (18%), Positives = 15/44 (34%)

Query: 18  TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
            +   +Q HL     V  +  G       +        Q++GI+
Sbjct: 107 HFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGID 150

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 36.8 bits (85), Expect = 8e-04
 Identities = 7/39 (17%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
          ++  ++ +  KVL++  G G  + ++ +      +V+G+
Sbjct: 31 LLMKYMKKRGKVLDLACGVGGFSFLLEDY---GFEVVGV 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.76
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.68
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.66
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.66
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.66
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.65
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.65
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.64
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.64
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.64
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.64
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.63
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.62
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.62
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.62
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.61
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.61
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.61
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.61
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.61
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.6
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.6
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.6
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.6
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.6
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.59
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.59
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.59
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.59
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.59
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.59
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.59
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.58
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.58
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.58
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.58
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.58
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.58
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.58
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.58
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.58
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.58
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.57
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.57
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.57
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.57
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.56
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.56
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.56
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.56
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.56
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.56
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.56
3ocj_A	305	Putative exported protein; structural genomics, PS	99.56
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.55
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.55
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.55
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.55
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.55
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.55
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.54
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.54
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.54
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.54
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.54
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.54
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.54
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.54
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.53
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.53
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.53
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.53
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.53
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.53
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.53
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.53
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.53
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.52
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.52
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.52
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.52
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.52
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.52
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.52
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.52
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.51
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.51
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.51
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.51
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.5
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.5
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.5
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.49
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.49
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.49
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.49
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.49
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.49
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.49
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.49
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.49
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.48
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.48
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.48
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.48
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.48
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.48
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.48
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.48
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.48
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.47
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.47
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.47
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.47
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.47
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.47
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.47
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.47
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.47
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.47
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.46
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.46
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.46
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.46
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.46
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.45
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.45
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.45
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.45
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.45
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.45
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.45
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.45
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.44
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.44
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.44
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.44
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.44
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.44
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.44
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.43
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.43
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.43
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.43
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.43
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.43
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.43
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.42
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.42
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.42
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.42
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.41
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.41
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.4
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.4
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.4
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.39
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.39
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.38
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.38
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.38
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.38
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.38
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.38
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.38
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.37
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.37
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.37
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.37
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.37
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.36
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.36
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.36
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.36
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.35
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.35
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.35
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.34
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.34
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.34
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.34
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.34
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.34
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.33
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.33
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.33
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.33
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.33
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.33
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.32
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.32
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.32
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.32
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.32
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.31
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.31
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.31
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.31
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.31
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.31
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.31
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.31
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.3
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.3
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.3
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.29
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.29
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.29
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.28
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.28
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.28
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.28
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.28
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.28
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.28
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.27
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.27
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.27
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.27
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.27
2o07_A	304	Spermidine synthase; structural genomics, structur	99.27
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.26
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.26
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.25
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.24
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.23
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.23
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.22
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.22
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.21
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.21
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.21
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.2
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.2
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.2
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.2
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.2
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.19
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.19
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.18
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.18
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.17
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.17
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.17
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.16
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.16
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.15
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.15
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.11
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.09
3lkd_A	542	Type I restriction-modification system methyltrans	99.09
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.09
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	99.09
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.08
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.07
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.07
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.07
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.06
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.05
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.04
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.04
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.03
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.02
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.02
3khk_A	544	Type I restriction-modification system methylation	99.01
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.0
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.98
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.96
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.95
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.95
3ufb_A	530	Type I restriction-modification system methyltran	98.94
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.94
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.92
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.92
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.91
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.84
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.78
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.7
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.63
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	98.56
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.55
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.55
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.46
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.41
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.4
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.39
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.38
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.31
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.26
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.24
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.22
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.2
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.11
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.09
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.94
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.76
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.44
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.41
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.39
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.38
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.32
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.31
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.29
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.28
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.24
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.13
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.81
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.79
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.58
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.47
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.3
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.06
3me5_A	482	Cytosine-specific methyltransferase; structural ge	95.85
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	94.71
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	94.49
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	94.2
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	93.89
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.8
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	93.73
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.68
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	93.6
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	93.11
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	93.03
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.02
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.94
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	92.9
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	92.79
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	92.77
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	92.68
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.39
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	92.33
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	92.31
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	92.3
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	92.3
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	92.26
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	92.2
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	92.16
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	92.15
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	92.05
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	91.91
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	91.89
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	91.86
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	91.67
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	91.56
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	91.51
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.3
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	91.28
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	91.26
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.26
3imf_A	257	Short chain dehydrogenase; structural genomics, in	91.26
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	91.22
4g65_A	461	TRK system potassium uptake protein TRKA; structur	91.2
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	91.17
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	91.07
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	91.03
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.02
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	91.02
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	91.01
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	90.95
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	90.84
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	90.82
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	90.78
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	90.75
3gms_A	340	Putative NADPH:quinone reductase; structural genom	90.73
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	90.65
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	90.59
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	90.57
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	90.53
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	90.43
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	90.42
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	90.38
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	90.01
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.0
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	89.99
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	89.98
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	89.7
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	89.65
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	89.62
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	89.58
4eye_A	342	Probable oxidoreductase; structural genomics, niai	89.52
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	89.51
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	89.45
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	89.34
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	89.32
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	89.3
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	89.25
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	89.21
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	89.19
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	89.15
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	89.1
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	89.1
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	89.07
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	89.07
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	89.05
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	89.0
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	88.97
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	88.95
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	88.91
3rih_A	293	Short chain dehydrogenase or reductase; structural	88.85
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	88.75
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	88.72
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	88.66
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	88.54
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	88.41
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	88.36
4dqx_A	277	Probable oxidoreductase protein; structural genomi	88.33
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	88.31
1id1_A	153	Putative potassium channel protein; RCK domain, E.	88.22
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	88.2
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	88.14
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	88.12
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	88.1
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	88.0
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	87.97
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	87.91
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	87.91
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	87.91
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	87.8
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	87.79
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	87.65
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	87.52
3c85_A	183	Putative glutathione-regulated potassium-efflux S	87.51
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	87.49
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	87.49
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	87.48
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	87.48
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	87.45
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	87.43
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	87.43
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	87.42
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	87.4
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	87.39
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	87.36
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	87.29
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	87.19
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	87.17
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	87.15
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	87.12
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	87.08
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	87.05
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	87.03
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	86.98
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	86.97
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	86.95
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	86.87
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	86.73
3cxt_A	291	Dehydrogenase with different specificities; rossma	86.71
1lnq_A	336	MTHK channels, potassium channel related protein;	86.7
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	86.7
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	86.7
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	86.6
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	86.53
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	86.53
1xq1_A	266	Putative tropinone reducatse; structural genomics,	86.44
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	86.3
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	86.21
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	86.19
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	86.04
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	86.02
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	85.97
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	85.96
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	85.87
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	85.73
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	85.66
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	85.58
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	85.57
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	85.57
1xkq_A	280	Short-chain reductase family member (5D234); parra	85.56
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	85.55
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	85.47
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	85.46
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	85.41
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	85.37
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	85.33
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	85.24
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	85.18
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	84.92
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	84.87
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	84.79
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	84.72
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	84.72
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	84.69
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	84.59
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	84.5
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	84.5
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	84.46
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	84.39
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	84.26
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	84.13
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	84.1
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	84.09
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	84.08
1xhl_A	297	Short-chain dehydrogenase/reductase family member	84.04
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	83.96
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	83.73
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	83.72
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	83.7
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	83.45
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	83.38
1spx_A	278	Short-chain reductase family member (5L265); paral	83.34

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.76  E-value=1.3e-18  Score=126.02  Aligned_cols=105  Identities=10%  Similarity=0.226  Sum_probs=86.1

Q ss_pred             HHhcccCCCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhh
Q psy5757          21 SIIQPHLNENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRI   98 (139)
Q Consensus        21 ~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~   98 (139)
                      ..+..+++++.+|||+|||+|..+..+++... +.++++|+|+|+.|++.|++++.. +.     ..+++++++|+.+  
T Consensus        62 ~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~-----~~~v~~~~~D~~~--  134 (261)
T 4gek_A           62 MLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRD--  134 (261)
T ss_dssp             HHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCTTT--
T ss_pred             HHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc-----CceEEEeeccccc--
Confidence            33344578999999999999999999999874 456999999999999999999887 44     4689999999654  


Q ss_pred             HHHhhhccCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757          99 ETVELMMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus        99 ~~~~~~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                            .+.+.+|+|+++.++||+..+     ....++.++|+|.
T Consensus       135 ------~~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~  173 (261)
T 4gek_A          135 ------IAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGA  173 (261)
T ss_dssp             ------CCCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             ------ccccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcE
Confidence                  235679999999999999765     3455888999885

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.68  E-value=1.9e-16  Score=110.25  Aligned_cols=113  Identities=19%  Similarity=0.241  Sum_probs=90.6

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccccc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLT   83 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~   83 (139)
                      +.++.++.+.....+.+.+.  ..++.+|||+|||+|..+..+++...   +++++|+++.+++.|++++.. +.     
T Consensus        55 ~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~-----  124 (210)
T 3lbf_A           55 GQGQTISQPYMVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDL-----  124 (210)
T ss_dssp             TTSCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTC-----
T ss_pred             CCCCEeCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCC-----
Confidence            34567778888888888885  57889999999999999999999843   999999999999999999987 44     


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCC
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEG  137 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g  137 (139)
                       .+++++.+|+.+.+.      ..++||+|+++.++|++.+.   .++.++|+|
T Consensus       125 -~~v~~~~~d~~~~~~------~~~~~D~i~~~~~~~~~~~~---~~~~L~pgG  168 (210)
T 3lbf_A          125 -HNVSTRHGDGWQGWQ------ARAPFDAIIVTAAPPEIPTA---LMTQLDEGG  168 (210)
T ss_dssp             -CSEEEEESCGGGCCG------GGCCEEEEEESSBCSSCCTH---HHHTEEEEE
T ss_pred             -CceEEEECCcccCCc------cCCCccEEEEccchhhhhHH---HHHhcccCc
Confidence             689999999765322      24679999999999988763   234444444

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.66  E-value=1.9e-16  Score=111.81  Aligned_cols=113  Identities=25%  Similarity=0.364  Sum_probs=89.0

Q ss_pred             hhhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCC-----CceEEEEeCCHHHHHHHHHHHHh-h
Q psy5757           4 VKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNS-----TGQVIGIEHVPQLVNSSIQNILH-S   77 (139)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~-----~~~v~~~d~~~~~~~~a~~~~~~-~   77 (139)
                      ++++++++.+.....+++.+...+.++.+|||+|||+|..+..+++..+.     .++++++|+++.+++.|++++.. +
T Consensus        59 ~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  138 (227)
T 1r18_A           59 IGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD  138 (227)
T ss_dssp             EETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             cCCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcC
Confidence            35677889999999999999755788899999999999999999997642     35999999999999999998876 3


Q ss_pred             ccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757          78 NARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        78 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                      . ..+...+++++.+|+.+.+.      ...+||+|+++.+++++.
T Consensus       139 ~-~~~~~~~v~~~~~d~~~~~~------~~~~fD~I~~~~~~~~~~  177 (227)
T 1r18_A          139 R-SMLDSGQLLIVEGDGRKGYP------PNAPYNAIHVGAAAPDTP  177 (227)
T ss_dssp             H-HHHHHTSEEEEESCGGGCCG------GGCSEEEEEECSCBSSCC
T ss_pred             c-cccCCCceEEEECCcccCCC------cCCCccEEEECCchHHHH
Confidence            0 00001689999999765322      125799999999988765

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.66  E-value=9.5e-16  Score=105.35  Aligned_cols=113  Identities=13%  Similarity=-0.015  Sum_probs=83.5

Q ss_pred             HHHHHHHHHhcccC-CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEE
Q psy5757          14 SAILTYLSIIQPHL-NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVA   91 (139)
Q Consensus        14 ~~~~~~~~~l~~~~-~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~   91 (139)
                      .....+.+.+.... .++.+|||+|||+|..+..++...  ..+++++|+|+.+++.|++++.. +.      +++++++
T Consensus        28 ~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~------~~v~~~~   99 (189)
T 3p9n_A           28 RVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRG--AASVLFVESDQRSAAVIARNIEALGL------SGATLRR   99 (189)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEECCHHHHHHHHHHHHHHTC------SCEEEEE
T ss_pred             HHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCC--CCeEEEEECCHHHHHHHHHHHHHcCC------CceEEEE
Confidence            34455566664321 577899999999999999888754  33899999999999999999988 43      7899999


Q ss_pred             ccchhhhHHHhhhccCCceeEEecCcccccc-cc---ceeeeee--eccCCCC
Q psy5757          92 LGMIKRIETVELMMKFDRYDFLPHAPAESWM-NI---PVCINYT--ATMPEGS  138 (139)
Q Consensus        92 ~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~-~~---p~~~~~~--~~~p~g~  138 (139)
                      +|+.+...    ..+.++||+|++++++|+. .+   ......+  .++|+|.
T Consensus       100 ~d~~~~~~----~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~  148 (189)
T 3p9n_A          100 GAVAAVVA----AGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTV  148 (189)
T ss_dssp             SCHHHHHH----HCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCE
T ss_pred             ccHHHHHh----hccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeE
Confidence            99765322    2235689999999999985 22   2233344  7888874

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.66  E-value=4.1e-16  Score=109.84  Aligned_cols=116  Identities=28%  Similarity=0.365  Sum_probs=90.1

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcC----CCceEEEEeCCHHHHHHHHHHHHh-hcc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMN----STGQVIGIEHVPQLVNSSIQNILH-SNA   79 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~----~~~~v~~~d~~~~~~~~a~~~~~~-~~~   79 (139)
                      +.++.++.+.....+++.+...+.++.+|||+|||+|..+..+++...    +.++++++|+++.+++.|++++.. +. 
T Consensus        56 ~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-  134 (227)
T 2pbf_A           56 SHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKP-  134 (227)
T ss_dssp             ETTEEECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCG-
T ss_pred             CCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCc-
Confidence            456778889988888998865578889999999999999999999875    567999999999999999999877 31 


Q ss_pred             ccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757          80 RLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        80 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                      ..+...+++++.+|+.+.+....  ...++||+|+++.+++++.
T Consensus       135 ~~~~~~~v~~~~~d~~~~~~~~~--~~~~~fD~I~~~~~~~~~~  176 (227)
T 2pbf_A          135 ELLKIDNFKIIHKNIYQVNEEEK--KELGLFDAIHVGASASELP  176 (227)
T ss_dssp             GGGSSTTEEEEECCGGGCCHHHH--HHHCCEEEEEECSBBSSCC
T ss_pred             cccccCCEEEEECChHhcccccC--ccCCCcCEEEECCchHHHH
Confidence            00112689999999766331100  1135799999999988764

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.65  E-value=2e-16  Score=113.50  Aligned_cols=106  Identities=15%  Similarity=0.317  Sum_probs=84.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+++.+.  ..++.+|||+|||+|.++..+++...   +++++|+|+.+++.|++++.. +.      ++++++++|+
T Consensus        26 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~   94 (260)
T 1vl5_A           26 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDA   94 (260)
T ss_dssp             HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC
T ss_pred             HHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCC------CceEEEEecH
Confidence            455666664  46788999999999999999999874   999999999999999999877 44      6899999996


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      .+ +     +.+.++||+|+++.++||+.++...   .++.++|+|.
T Consensus        95 ~~-l-----~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~  135 (260)
T 1vl5_A           95 EQ-M-----PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQ  135 (260)
T ss_dssp             -C-C-----CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             Hh-C-----CCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCE
Confidence            54 1     2235689999999999999987533   3667777764

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.65  E-value=7.5e-16  Score=110.02  Aligned_cols=110  Identities=13%  Similarity=0.111  Sum_probs=86.6

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEE
Q psy5757          13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVA   91 (139)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~   91 (139)
                      +.....++..+.  +.++.+|||+|||+|..+..+++..+  ++++++|+++.+++.|++++.. ++     ..++++++
T Consensus        22 ~~~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~v~~~~   92 (256)
T 1nkv_A           22 EEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGV-----SERVHFIH   92 (256)
T ss_dssp             HHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEE
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEE
Confidence            334556666654  57889999999999999999999874  3899999999999999999887 54     35899999


Q ss_pred             ccchhhhHHHhhhccCCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757          92 LGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus        92 ~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      +|+.+ +.     . .++||+|++..++|++.++.   ...++.++|+|.
T Consensus        93 ~d~~~-~~-----~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~  135 (256)
T 1nkv_A           93 NDAAG-YV-----A-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGI  135 (256)
T ss_dssp             SCCTT-CC-----C-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEE
T ss_pred             CChHh-CC-----c-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeE
Confidence            99654 11     1 46799999999999998763   333777777774

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.64  E-value=9.3e-16  Score=107.12  Aligned_cols=105  Identities=23%  Similarity=0.381  Sum_probs=85.6

Q ss_pred             hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccC
Q psy5757           6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTD   84 (139)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~   84 (139)
                      .++.++.+.....+.+.+.  ..++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++.. +.      
T Consensus        56 ~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------  127 (215)
T 2yxe_A           56 YGQTISAIHMVGMMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY------  127 (215)
T ss_dssp             TTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC------
T ss_pred             CCcEeCcHHHHHHHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------
Confidence            4556677887888888774  67888999999999999999999985556999999999999999999877 44      


Q ss_pred             CcEEEEEccchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757          85 GHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        85 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                      .+++++.+|+.+.+.      ..++||+|+++.++|++.+
T Consensus       128 ~~v~~~~~d~~~~~~------~~~~fD~v~~~~~~~~~~~  161 (215)
T 2yxe_A          128 DNVIVIVGDGTLGYE------PLAPYDRIYTTAAGPKIPE  161 (215)
T ss_dssp             TTEEEEESCGGGCCG------GGCCEEEEEESSBBSSCCH
T ss_pred             CCeEEEECCcccCCC------CCCCeeEEEECCchHHHHH
Confidence            679999999644221      1357999999999998763

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.64  E-value=5.1e-17  Score=117.45  Aligned_cols=101  Identities=12%  Similarity=0.188  Sum_probs=79.0

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      .+.++|......+.+|||+|||+|..+..+++...   +|+|+|+|+.+++.|++           .++++++++|+.+ 
T Consensus        28 ~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~-----------~~~v~~~~~~~e~-   92 (257)
T 4hg2_A           28 ALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALR-----------HPRVTYAVAPAED-   92 (257)
T ss_dssp             HHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCC-----------CTTEEEEECCTTC-
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhh-----------cCCceeehhhhhh-
Confidence            34555554456678999999999999999999875   99999999999987643           2689999999654 


Q ss_pred             hHHHhhhccCCceeEEecCccccccccce--eeeeeeccCCCC
Q psy5757          98 IETVELMMKFDRYDFLPHAPAESWMNIPV--CINYTATMPEGS  138 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~~~~~~~p~--~~~~~~~~p~g~  138 (139)
                         +  +.+.++||+|++..++||+..+.  ....+.++|+|.
T Consensus        93 ---~--~~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~  130 (257)
T 4hg2_A           93 ---T--GLPPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAV  130 (257)
T ss_dssp             ---C--CCCSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEE
T ss_pred             ---h--cccCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCE
Confidence               2  23467899999999999987543  334778888874

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.64  E-value=5.4e-16  Score=108.42  Aligned_cols=108  Identities=19%  Similarity=0.264  Sum_probs=86.1

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      ..++..+.  +.++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++.. +.      ++++++.+|+.
T Consensus        27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~   98 (219)
T 3dh0_A           27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------KNVEVLKSEEN   98 (219)
T ss_dssp             HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECBTT
T ss_pred             HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEecccc
Confidence            45555554  57788999999999999999999986667999999999999999999887 54      68999999965


Q ss_pred             hhhHHHhhhccCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      + +     ..+.++||+|+++.++|++.++...   .++.++|+|.
T Consensus        99 ~-~-----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~  138 (219)
T 3dh0_A           99 K-I-----PLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAY  138 (219)
T ss_dssp             B-C-----SSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEE
T ss_pred             c-C-----CCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeE
Confidence            4 1     1235679999999999999876432   3566666663

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.64  E-value=6.7e-16  Score=108.67  Aligned_cols=107  Identities=13%  Similarity=0.090  Sum_probs=82.3

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++.. +.     .++++++++|+.+.++.+....
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~l~~~~~~~  130 (221)
T 3u81_A           56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL-----QDKVTILNGASQDLIPQLKKKY  130 (221)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHHGGGTTTTS
T ss_pred             hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC-----CCceEEEECCHHHHHHHHHHhc
Confidence            35678999999999999999999876577999999999999999999987 55     3579999999766444322111


Q ss_pred             cCCceeEEecCccccccccceeee--eeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPVCIN--YTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~~~~--~~~~~p~g~  138 (139)
                      ..++||+|+++...++...+....  .+.++|+|.
T Consensus       131 ~~~~fD~V~~d~~~~~~~~~~~~~~~~~~LkpgG~  165 (221)
T 3u81_A          131 DVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV  165 (221)
T ss_dssp             CCCCCSEEEECSCGGGHHHHHHHHHHTTCCCTTCE
T ss_pred             CCCceEEEEEcCCcccchHHHHHHHhccccCCCeE
Confidence            225799999999877766543221  278888885

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.63  E-value=8e-16  Score=109.36  Aligned_cols=111  Identities=14%  Similarity=0.167  Sum_probs=87.2

Q ss_pred             cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEE
Q psy5757          11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKF   89 (139)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~   89 (139)
                      +++......++.+.  +.++.+|||+|||+|..+..+++...   +++++|+++.+++.+++++.. +.      +++++
T Consensus         5 ~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~   73 (239)
T 1xxl_A            5 HHHHSLGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGV------ENVRF   73 (239)
T ss_dssp             -CHHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTC------CSEEE
T ss_pred             ccCCCcchHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCC------CCeEE
Confidence            34445566777775  68889999999999999999998874   999999999999999999877 44      68999


Q ss_pred             EEccchhhhHHHhhhccCCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757          90 VALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus        90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                      +++|+.+ +     +.+.++||+|+++.++||+.++..   ..++.++|+|.
T Consensus        74 ~~~d~~~-~-----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~  119 (239)
T 1xxl_A           74 QQGTAES-L-----PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGR  119 (239)
T ss_dssp             EECBTTB-C-----CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             Eeccccc-C-----CCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcE
Confidence            9999644 2     223568999999999999987643   23566667663

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.62  E-value=2e-15  Score=106.23  Aligned_cols=112  Identities=29%  Similarity=0.439  Sum_probs=87.5

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccccc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLT   83 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~   83 (139)
                      .+++.++.+.....+++.+..++.++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++.. +. ..+.
T Consensus        53 ~~~~~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~  131 (226)
T 1i1n_A           53 GFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP-TLLS  131 (226)
T ss_dssp             ETTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCT-HHHH
T ss_pred             CCCceecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc-cccC
Confidence            356778888888888888865577889999999999999999999876566999999999999999998876 21 0001


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                      ..+++++++|+.+...      ..++||+|+++.+++++.
T Consensus       132 ~~~v~~~~~d~~~~~~------~~~~fD~i~~~~~~~~~~  165 (226)
T 1i1n_A          132 SGRVQLVVGDGRMGYA------EEAPYDAIHVGAAAPVVP  165 (226)
T ss_dssp             TSSEEEEESCGGGCCG------GGCCEEEEEECSBBSSCC
T ss_pred             CCcEEEEECCcccCcc------cCCCcCEEEECCchHHHH
Confidence            2589999999654221      235799999998877654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.62  E-value=2.2e-15  Score=104.61  Aligned_cols=113  Identities=17%  Similarity=0.188  Sum_probs=88.9

Q ss_pred             cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEE
Q psy5757          11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKF   89 (139)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~   89 (139)
                      +.......++..+.  ..++.+|||+|||+|..+..+++.. +.++++++|+++.+++.|++++.. +.      +++++
T Consensus        24 ~~~~i~~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~   94 (204)
T 3e05_A           24 TKQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVA------RNVTL   94 (204)
T ss_dssp             CCHHHHHHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHTC------TTEEE
T ss_pred             ChHHHHHHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEE
Confidence            34444456666664  5788999999999999999999997 466999999999999999999887 44      78999


Q ss_pred             EEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          90 VALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      +.+|+.+.+.      ...+||+|+++.+++.........++.++|+|.
T Consensus        95 ~~~d~~~~~~------~~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~  137 (204)
T 3e05_A           95 VEAFAPEGLD------DLPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGV  137 (204)
T ss_dssp             EECCTTTTCT------TSCCCSEEEESCCTTCHHHHHHHHHHHCCTTCE
T ss_pred             EeCChhhhhh------cCCCCCEEEECCCCcCHHHHHHHHHHhcCCCeE
Confidence            9999755322      235699999999887555555666778888885

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.62  E-value=1.2e-15  Score=109.90  Aligned_cols=109  Identities=20%  Similarity=0.190  Sum_probs=84.3

Q ss_pred             HHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEcc
Q psy5757          15 AILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALG   93 (139)
Q Consensus        15 ~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d   93 (139)
                      ....++..+. .+.++.+|||+|||+|..+..+++.  +.++++++|+++.+++.|++++.. +.     .++++++++|
T Consensus        33 ~~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d  104 (267)
T 3kkz_A           33 VTLKALSFID-NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGL-----QNRVTGIVGS  104 (267)
T ss_dssp             HHHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECC
T ss_pred             HHHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCC-----CcCcEEEEcC
Confidence            3444555554 3578899999999999999999998  345999999999999999999887 54     3579999999


Q ss_pred             chhhhHHHhhhccCCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757          94 MIKRIETVELMMKFDRYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus        94 ~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      +.+ +     +.+.++||+|+++.++|++ ++.   ...++.++|+|.
T Consensus       105 ~~~-~-----~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~  145 (267)
T 3kkz_A          105 MDD-L-----PFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGY  145 (267)
T ss_dssp             TTS-C-----CCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEE
T ss_pred             hhh-C-----CCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCE
Confidence            654 2     1235689999999999998 443   233667777764

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.61  E-value=3e-15  Score=106.28  Aligned_cols=107  Identities=16%  Similarity=0.078  Sum_probs=83.2

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+...+.. ..++.+|||+|||+|..+..+++...   +++++|+++.+++.|++++.. ++     .++++++++|+
T Consensus        66 ~~~l~~~~~~-~~~~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~  136 (241)
T 3gdh_A           66 AEHIAGRVSQ-SFKCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGI-----ADKIEFICGDF  136 (241)
T ss_dssp             HHHHHHHHHH-HSCCSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCH
T ss_pred             HHHHHHHhhh-ccCCCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCC-----CcCeEEEECCh
Confidence            4444444442 34788999999999999999999763   999999999999999999987 43     25899999996


Q ss_pred             hhhhHHHhhhccCCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                      .+    +.   +.++||+|++++++|+..++..   ..++.++|+|.
T Consensus       137 ~~----~~---~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~  176 (241)
T 3gdh_A          137 LL----LA---SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGF  176 (241)
T ss_dssp             HH----HG---GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHH
T ss_pred             HH----hc---ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcce
Confidence            54    21   2468999999999999877643   23566788873

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.61  E-value=2.7e-15  Score=110.00  Aligned_cols=96  Identities=16%  Similarity=0.083  Sum_probs=81.2

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ++++.+|||+|||+|..+..+++..+  ++++++|+|+.+++.|+++... ++     ..+++++++|+.+    +    
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~----~----  134 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDS-----PRRKEVRIQGWEE----F----  134 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCC-----SSCEEEEECCGGG----C----
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECCHHH----c----
Confidence            47888999999999999999999864  4999999999999999999887 54     3589999999643    1    


Q ss_pred             cCCceeEEecCccccccccc------------eeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIP------------VCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p------------~~~~~~~~~p~g~  138 (139)
                       .++||+|+++.++|++++|            .....+.++|+|.
T Consensus       135 -~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~  178 (302)
T 3hem_A          135 -DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGR  178 (302)
T ss_dssp             -CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCE
T ss_pred             -CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcE
Confidence             4679999999999999776            2344788899885

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.61  E-value=1.6e-15  Score=108.36  Aligned_cols=110  Identities=18%  Similarity=0.212  Sum_probs=84.4

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEc
Q psy5757          14 SAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVAL   92 (139)
Q Consensus        14 ~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~   92 (139)
                      .....++..+. .+.++.+|||+|||+|..+..+++..+.  +++++|+++.+++.++++... ++     ..+++++++
T Consensus        32 ~~~~~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~  103 (257)
T 3f4k_A           32 EATRKAVSFIN-ELTDDAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANC-----ADRVKGITG  103 (257)
T ss_dssp             HHHHHHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEEC
T ss_pred             HHHHHHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEEC
Confidence            33445555554 3567889999999999999999999853  999999999999999999887 55     346999999


Q ss_pred             cchhhhHHHhhhccCCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757          93 GMIKRIETVELMMKFDRYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus        93 d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      |+.+ +     +.+.++||+|+++.++|++ ++.   ...++.++|+|.
T Consensus       104 d~~~-~-----~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~  145 (257)
T 3f4k_A          104 SMDN-L-----PFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGF  145 (257)
T ss_dssp             CTTS-C-----SSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEE
T ss_pred             Chhh-C-----CCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcE
Confidence            9644 2     2235689999999999998 432   333666777764

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.61  E-value=2.4e-15  Score=111.32  Aligned_cols=102  Identities=20%  Similarity=0.340  Sum_probs=83.6

Q ss_pred             ccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCc
Q psy5757           8 AAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGH   86 (139)
Q Consensus         8 ~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~   86 (139)
                      +..+.+.....+++.+.  ++++.+|||+|||+|.++..+++.....++|+++|+++++++.|++++.. +.      .+
T Consensus        56 q~~~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~------~~  127 (317)
T 1dl5_A           56 STSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------EN  127 (317)
T ss_dssp             EEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------CS
T ss_pred             eeccCHHHHHHHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CC
Confidence            45556677778888775  67889999999999999999999885346799999999999999999887 54      67


Q ss_pred             EEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757          87 IKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        87 i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                      ++++.+|+.+.+.      ..++||+|+++.++|++.
T Consensus       128 v~~~~~d~~~~~~------~~~~fD~Iv~~~~~~~~~  158 (317)
T 1dl5_A          128 VIFVCGDGYYGVP------EFSPYDVIFVTVGVDEVP  158 (317)
T ss_dssp             EEEEESCGGGCCG------GGCCEEEEEECSBBSCCC
T ss_pred             eEEEECChhhccc------cCCCeEEEEEcCCHHHHH
Confidence            9999999655221      235799999999999876

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.61  E-value=2e-15  Score=105.58  Aligned_cols=113  Identities=11%  Similarity=0.178  Sum_probs=84.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+.+.+.  ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++.. ++.. ....+++++.+|+
T Consensus        18 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~v~~~~~d~   93 (217)
T 3jwh_A           18 MNGVVAALK--QSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPR-NQWERLQLIQGAL   93 (217)
T ss_dssp             HHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCH-HHHTTEEEEECCT
T ss_pred             HHHHHHHHH--hcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCc-ccCcceEEEeCCc
Confidence            444555553  3577899999999999999999976 345999999999999999999875 3200 0012799999995


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                      .. .     ..+.++||+|+++.++|++.++     ....++.++|+|.
T Consensus        94 ~~-~-----~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  136 (217)
T 3jwh_A           94 TY-Q-----DKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIV  136 (217)
T ss_dssp             TS-C-----CGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEE
T ss_pred             cc-c-----cccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEE
Confidence            43 1     1224679999999999999876     3444778888873

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.60  E-value=2.5e-15  Score=101.68  Aligned_cols=113  Identities=12%  Similarity=0.064  Sum_probs=86.0

Q ss_pred             cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEE
Q psy5757          11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKF   89 (139)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~   89 (139)
                      +..++...+++.+.  ..++.+|||+|||+|..+..+++.. +.++++++|+++.+++.|++++.. +.     ..++ +
T Consensus         9 t~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~-~   79 (178)
T 3hm2_A            9 TKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGV-----SDRI-A   79 (178)
T ss_dssp             HHHHHHHHHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTC-----TTSE-E
T ss_pred             cHHHHHHHHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCC-----CCCE-E
Confidence            34445566666664  5778899999999999999999987 456999999999999999999887 54     2378 8


Q ss_pred             EEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          90 VALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      +.+|..+.++     ...++||+|+++.++|+ .......++.++|+|.
T Consensus        80 ~~~d~~~~~~-----~~~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~  122 (178)
T 3hm2_A           80 VQQGAPRAFD-----DVPDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGR  122 (178)
T ss_dssp             EECCTTGGGG-----GCCSCCSEEEECC-TTC-TTHHHHHHHTCCTTCE
T ss_pred             EecchHhhhh-----ccCCCCCEEEECCcccH-HHHHHHHHHhcCCCCE
Confidence            8888654332     11267999999999988 4445555777888875

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.60  E-value=1.5e-15  Score=105.59  Aligned_cols=95  Identities=16%  Similarity=0.215  Sum_probs=76.6

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      .+|||+|||+|..+..+++.  +..+++++|+++.+++.|++++.. +.     ..+++++++|+.+ +     +.+.++
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~-~-----~~~~~~  111 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANL-----NDRIQIVQGDVHN-I-----PIEDNY  111 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECBTTB-C-----SSCTTC
T ss_pred             CEEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccc-----cCceEEEEcCHHH-C-----CCCccc
Confidence            39999999999999999998  345999999999999999999887 54     3589999999654 1     223568


Q ss_pred             eeEEecCcccccccccee---eeeeeccCCCC
Q psy5757         110 YDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus       110 ~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                      ||+|+++.++|++.++..   ..++.++|+|.
T Consensus       112 ~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~  143 (219)
T 3dlc_A          112 ADLIVSRGSVFFWEDVATAFREIYRILKSGGK  143 (219)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             ccEEEECchHhhccCHHHHHHHHHHhCCCCCE
Confidence            999999999999977643   23666677664

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.60  E-value=2.9e-15  Score=107.98  Aligned_cols=99  Identities=15%  Similarity=0.147  Sum_probs=79.6

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.+|||+|||+|..+..+++..+  ++++++|+|+.+++.++++... +.     ..+++++.+|+.+ +     +.
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~-~-----~~  125 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARATAAGL-----ANRVTFSYADAMD-L-----PF  125 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHSC--CEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTS-C-----CS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEECcccc-C-----CC
Confidence            46788999999999999999999763  4999999999999999999877 54     3579999999654 1     22


Q ss_pred             cCCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                      +.++||+|+++.++||+.++..   ..++.++|+|.
T Consensus       126 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~  161 (273)
T 3bus_A          126 EDASFDAVWALESLHHMPDRGRALREMARVLRPGGT  161 (273)
T ss_dssp             CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEE
T ss_pred             CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeE
Confidence            3568999999999999987643   23666677764

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.60  E-value=3.4e-15  Score=104.87  Aligned_cols=116  Identities=16%  Similarity=0.240  Sum_probs=88.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...++..+.. ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++.. +.     ..+++++++|+
T Consensus        46 ~~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~  119 (223)
T 3duw_A           46 QGKFLQLLVQ-IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL-----NDRVEVRTGLA  119 (223)
T ss_dssp             HHHHHHHHHH-HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCH
T ss_pred             HHHHHHHHHH-hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCH
Confidence            4444544432 45678999999999999999999985567999999999999999999987 54     34699999998


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      .+.++.+... ..++||+|++....++.........+.++|+|.
T Consensus       120 ~~~~~~~~~~-~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~  162 (223)
T 3duw_A          120 LDSLQQIENE-KYEPFDFIFIDADKQNNPAYFEWALKLSRPGTV  162 (223)
T ss_dssp             HHHHHHHHHT-TCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCE
T ss_pred             HHHHHHHHhc-CCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcE
Confidence            7654443221 125699999988866655555566777888874

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.60  E-value=1.8e-15  Score=105.00  Aligned_cols=107  Identities=12%  Similarity=0.096  Sum_probs=86.5

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+.+.+...+.++.+|||+|||+|..+..+++..  ..+++++|+++.+++.|++++.. +.      .+++++.+|+
T Consensus        47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~  118 (205)
T 3grz_A           47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLG--AKSVLATDISDESMTAAEENAALNGI------YDIALQKTSL  118 (205)
T ss_dssp             HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTC------CCCEEEESST
T ss_pred             HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCC------CceEEEeccc
Confidence            455666666556788999999999999999988753  34999999999999999999887 44      5599999996


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      .+.        ..++||+|+++.++|++.......++.++|+|.
T Consensus       119 ~~~--------~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~  154 (205)
T 3grz_A          119 LAD--------VDGKFDLIVANILAEILLDLIPQLDSHLNEDGQ  154 (205)
T ss_dssp             TTT--------CCSCEEEEEEESCHHHHHHHGGGSGGGEEEEEE
T ss_pred             ccc--------CCCCceEEEECCcHHHHHHHHHHHHHhcCCCCE
Confidence            541        236799999999999887777777777788774

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.59  E-value=1.6e-15  Score=103.57  Aligned_cols=88  Identities=14%  Similarity=0.142  Sum_probs=69.5

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ......++...++++.+|||+|||+|..+..+++..   .+|+++|+|+.+++.|++++.. +.      +++++++++.
T Consensus         9 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~~~   79 (185)
T 3mti_A            9 IHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLS---KKVYAFDVQEQALGKTSQRLSDLGI------ENTELILDGH   79 (185)
T ss_dssp             HHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHHTC------CCEEEEESCG
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCcH
Confidence            444555555557889999999999999999999983   3999999999999999999987 54      7899999774


Q ss_pred             hhhhHHHhhhccCCceeEEecCc
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAP  117 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~  117 (139)
                      .+ +..    ...++||+|+++.
T Consensus        80 ~~-l~~----~~~~~fD~v~~~~   97 (185)
T 3mti_A           80 EN-LDH----YVREPIRAAIFNL   97 (185)
T ss_dssp             GG-GGG----TCCSCEEEEEEEE
T ss_pred             HH-HHh----hccCCcCEEEEeC
Confidence            43 221    1246799999984

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.59  E-value=1.4e-15  Score=106.05  Aligned_cols=104  Identities=11%  Similarity=-0.020  Sum_probs=77.6

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccc------cccCCcEEEEEccchhhhH
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNAR------LLTDGHIKFVALGMIKRIE   99 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~------~~~~~~i~~~~~d~~~~~~   99 (139)
                      +.++.+|||+|||+|..+..+++...   +|+|+|+|+.+++.|+++... ....      .....+++++++|+.+ ++
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-l~   95 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA-LT   95 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS-ST
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc-CC
Confidence            46788999999999999999999853   999999999999999887642 0000      0012578999999765 22


Q ss_pred             HHhhhccCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         100 TVELMMKFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       100 ~~~~~~~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                         .. ..++||+|+++.++|+++.+.     ...++.++|+|.
T Consensus        96 ---~~-~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~  135 (203)
T 1pjz_A           96 ---AR-DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS  135 (203)
T ss_dssp             ---HH-HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred             ---cc-cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence               11 015799999999999987542     345788888885

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.59  E-value=3.6e-15  Score=104.35  Aligned_cols=113  Identities=14%  Similarity=0.229  Sum_probs=83.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+.+.+.  ..++.+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++.. ++.. ....+++++.+|+
T Consensus        18 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~v~~~~~d~   93 (219)
T 3jwg_A           18 LGTVVAVLK--SVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPE-MQRKRISLFQSSL   93 (219)
T ss_dssp             HHHHHHHHH--HTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCH-HHHTTEEEEECCS
T ss_pred             HHHHHHHHh--hcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhcccc-ccCcceEEEeCcc
Confidence            344445553  2567899999999999999999977 346999999999999999999876 3300 0012899999996


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                      .. .     ....++||+|+++.++|++.++     ....++.++|+|.
T Consensus        94 ~~-~-----~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  136 (219)
T 3jwg_A           94 VY-R-----DKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTV  136 (219)
T ss_dssp             SS-C-----CGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEE
T ss_pred             cc-c-----ccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEE
Confidence            43 1     1224679999999999999876     2334777888773

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.59  E-value=4e-15  Score=104.53  Aligned_cols=115  Identities=12%  Similarity=0.100  Sum_probs=81.5

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      ..++..+.. ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++.. +.     ..+++++++|+.
T Consensus        53 ~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~  126 (225)
T 3tr6_A           53 AQLLALLVK-LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL-----SDKIGLRLSPAK  126 (225)
T ss_dssp             HHHHHHHHH-HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCHH
T ss_pred             HHHHHHHHH-hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEEeCCHH
Confidence            344444432 35678999999999999999999875567999999999999999999987 54     356999999976


Q ss_pred             hhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEG  137 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g  137 (139)
                      +.++.+......++||+|+++...+.........++.++|+|
T Consensus       127 ~~~~~~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG  168 (225)
T 3tr6_A          127 DTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGG  168 (225)
T ss_dssp             HHHHHHHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEE
T ss_pred             HHHHHhhhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCCc
Confidence            644433211111679999988764433333333445555555

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.59  E-value=4.6e-15  Score=108.31  Aligned_cols=99  Identities=15%  Similarity=0.121  Sum_probs=80.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.+|||+|||+|..+..+++..+  ++++++|+++.+++.++++... +.     .++++++++|+.+ +     +.
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~-~-----~~  146 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVKYGSFLE-I-----PC  146 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEEECCTTS-C-----SS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEEcCccc-C-----CC
Confidence            57788999999999999999999864  3999999999999999999877 54     3689999999654 1     22


Q ss_pred             cCCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                      +.++||+|++..++|++.++..   ..++.++|+|.
T Consensus       147 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~  182 (297)
T 2o57_A          147 EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGV  182 (297)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             CCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeE
Confidence            3568999999999999987643   23666777764

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.59  E-value=1.6e-15  Score=105.85  Aligned_cols=95  Identities=18%  Similarity=0.246  Sum_probs=78.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..++.+|||+|||+|..+..+++...   +++++|+++.+++.++++...       ..+++++++|+.+. .      +
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~-~------~  111 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKR-------WSHISWAATDILQF-S------T  111 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTT-------CSSEEEEECCTTTC-C------C
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhccc-------CCCeEEEEcchhhC-C------C
Confidence            35667999999999999999999874   999999999999999998766       35899999996541 1      3


Q ss_pred             CCceeEEecCccccccccc------eeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIP------VCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p------~~~~~~~~~p~g~  138 (139)
                      .++||+|+++.++||+.++      ....++.++|+|.
T Consensus       112 ~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~  149 (216)
T 3ofk_A          112 AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGH  149 (216)
T ss_dssp             SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEE
T ss_pred             CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999987      3444677777774

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.59  E-value=6.3e-15  Score=104.54  Aligned_cols=103  Identities=22%  Similarity=0.354  Sum_probs=83.6

Q ss_pred             hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccC
Q psy5757           6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTD   84 (139)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~   84 (139)
                      .++.++.+.....+++.+.  ..++.+|||+|||+|..+..+++..+  .+++++|+++.+++.|++++.. +.      
T Consensus        70 ~~~~~~~~~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~------  139 (235)
T 1jg1_A           70 AGQTVSAPHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGV------  139 (235)
T ss_dssp             TTCEECCHHHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTC------
T ss_pred             CCceeccHHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCC------
Confidence            4556677888888888884  67888999999999999999999984  4999999999999999999887 44      


Q ss_pred             CcEEEEEccchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757          85 GHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        85 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                      .+++++.+|+...+.      ....||+|+++.+++++.+
T Consensus       140 ~~v~~~~~d~~~~~~------~~~~fD~Ii~~~~~~~~~~  173 (235)
T 1jg1_A          140 KNVHVILGDGSKGFP------PKAPYDVIIVTAGAPKIPE  173 (235)
T ss_dssp             CSEEEEESCGGGCCG------GGCCEEEEEECSBBSSCCH
T ss_pred             CCcEEEECCcccCCC------CCCCccEEEECCcHHHHHH
Confidence            679999999633222      1235999999999887764

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.58  E-value=3.4e-15  Score=105.96  Aligned_cols=115  Identities=17%  Similarity=0.198  Sum_probs=84.3

Q ss_pred             cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEE
Q psy5757          11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKF   89 (139)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~   89 (139)
                      ..+.....+...+.  ..++.+|||+|||+|..+..+++.. +.++++++|+++.+++.|++++.. ++     .+++++
T Consensus        55 ~~~~~~~~l~~~~~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~  126 (232)
T 3ntv_A           55 VDRLTLDLIKQLIR--MNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHF-----ENQVRI  126 (232)
T ss_dssp             CCHHHHHHHHHHHH--HHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTC-----TTTEEE
T ss_pred             cCHHHHHHHHHHHh--hcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEE
Confidence            34444444444443  4577899999999999999999965 467999999999999999999987 54     358999


Q ss_pred             EEccchhhhH-HHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          90 VALGMIKRIE-TVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        90 ~~~d~~~~~~-~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      +++|+.+.++ .+     .++||+|+++.............++.++|+|.
T Consensus       127 ~~~d~~~~~~~~~-----~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~  171 (232)
T 3ntv_A          127 IEGNALEQFENVN-----DKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGL  171 (232)
T ss_dssp             EESCGGGCHHHHT-----TSCEEEEEEETTSSSHHHHHHHHGGGEEEEEE
T ss_pred             EECCHHHHHHhhc-----cCCccEEEEcCcHHHHHHHHHHHHHhcCCCeE
Confidence            9999766433 21     46799999887655544444444566666653

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.58  E-value=3.3e-15  Score=105.60  Aligned_cols=118  Identities=9%  Similarity=0.089  Sum_probs=84.5

Q ss_pred             cChHHHHHHHHHhcccCC--CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccC-Cc
Q psy5757          11 GGISAILTYLSIIQPHLN--ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTD-GH   86 (139)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~--~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~-~~   86 (139)
                      ..+. ...++..+.....  ++.+|||+|||+|..+..+++..++.++++++|+++.+++.|+++++. +.     . ++
T Consensus        37 i~~~-~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~~  110 (221)
T 3dr5_A           37 PDEM-TGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY-----SPSR  110 (221)
T ss_dssp             CCHH-HHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC-----CGGG
T ss_pred             CCHH-HHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcCc
Confidence            3443 3444444442222  334999999999999999999886678999999999999999999988 54     3 58


Q ss_pred             EEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          87 IKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        87 i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      ++++++|+.+.+..    ...++||+|++....+.........++.++|+|.
T Consensus       111 i~~~~gda~~~l~~----~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~  158 (221)
T 3dr5_A          111 VRFLLSRPLDVMSR----LANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGA  158 (221)
T ss_dssp             EEEECSCHHHHGGG----SCTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEE
T ss_pred             EEEEEcCHHHHHHH----hcCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcE
Confidence            99999997664332    1246899999987755444444444566666653

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.58  E-value=5.2e-15  Score=108.31  Aligned_cols=102  Identities=15%  Similarity=0.258  Sum_probs=78.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhh-ccccccCCcEEEEEccchhhhHHHhhhc-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHS-NARLLTDGHIKFVALGMIKRIETVELMM-  105 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-~~~~~~~~~i~~~~~d~~~~~~~~~~~~-  105 (139)
                      .++.+|||+|||+|..+..+++...+..+++|+|+|+.+++.|++++... .    ...+++++++|+.+ +.   ... 
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~v~~~~~d~~~-~~---~~~~  106 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD----TYKNVSFKISSSDD-FK---FLGA  106 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-----CCTTEEEEECCTTC-CG---GGCT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC----CCCceEEEEcCHHh-CC---cccc
Confidence            57889999999999999999987645669999999999999999998762 0    13689999999665 22   111 


Q ss_pred             ---cCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757         106 ---KFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       106 ---~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                         ..++||+|+++.++||+ ++...   ..+.++|+|.
T Consensus       107 ~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~  144 (299)
T 3g5t_A          107 DSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGT  144 (299)
T ss_dssp             TTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEE
T ss_pred             ccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcE
Confidence               12689999999999999 66432   2566666664

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.58  E-value=7.2e-15  Score=100.14  Aligned_cols=99  Identities=16%  Similarity=0.124  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEE
Q psy5757          13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVA   91 (139)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~   91 (139)
                      ......+.+.+.. ..++.+|||+|||+|..+..+++..  ..+++++|+++.+++.|++++.. +.     .+++++++
T Consensus        29 ~~~~~~~~~~l~~-~~~~~~vLD~GcG~G~~~~~~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~  100 (187)
T 2fhp_A           29 DKVKESIFNMIGP-YFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKE-----PEKFEVRK  100 (187)
T ss_dssp             HHHHHHHHHHHCS-CCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEE
T ss_pred             HHHHHHHHHHHHh-hcCCCCEEEeCCccCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCC-----CcceEEEE
Confidence            3345556666642 3577899999999999999988854  34999999999999999999887 43     35799999


Q ss_pred             ccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757          92 LGMIKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        92 ~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      +|+.+....+.  ...++||+|+++++++.
T Consensus       101 ~d~~~~~~~~~--~~~~~fD~i~~~~~~~~  128 (187)
T 2fhp_A          101 MDANRALEQFY--EEKLQFDLVLLDPPYAK  128 (187)
T ss_dssp             SCHHHHHHHHH--HTTCCEEEEEECCCGGG
T ss_pred             CcHHHHHHHHH--hcCCCCCEEEECCCCCc
Confidence            99766333221  12467999999999763

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.58  E-value=3.7e-15  Score=106.62  Aligned_cols=111  Identities=13%  Similarity=0.053  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHh---cccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEE
Q psy5757          13 ISAILTYLSII---QPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKF   89 (139)
Q Consensus        13 ~~~~~~~~~~l---~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~   89 (139)
                      ......+.+.+   ...+.++.+|||+|||+|..+..+++...   +++++|+|+.+++.+++++...      ..++++
T Consensus        20 ~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~------~~~~~~   90 (263)
T 2yqz_A           20 PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGV------DRKVQV   90 (263)
T ss_dssp             HHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTS------CTTEEE
T ss_pred             hHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhcc------CCceEE
Confidence            34455666666   33467788999999999999999998743   9999999999999999987222      268999


Q ss_pred             EEccchhhhHHHhhhccCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757          90 VALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus        90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      +++|+.+ +     +.+.++||+|+++.++||+.++...   .++.++|+|.
T Consensus        91 ~~~d~~~-~-----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~  136 (263)
T 2yqz_A           91 VQADARA-I-----PLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGA  136 (263)
T ss_dssp             EESCTTS-C-----CSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEE
T ss_pred             EEccccc-C-----CCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcE
Confidence            9999644 2     1235679999999999999876432   3666777764

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.58  E-value=4.9e-15  Score=107.03  Aligned_cols=99  Identities=17%  Similarity=0.259  Sum_probs=81.1

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++.. +.      ++++++.+|+.+ +     ..
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~-~-----~~  101 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGI------KNVKFLQANIFS-L-----PF  101 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGG-C-----CS
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEccccc-C-----CC
Confidence            4678899999999999999999986 456999999999999999999887 44      689999999654 1     22


Q ss_pred             cCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      +.++||+|+++.++|++.++...   ..+.++|+|.
T Consensus       102 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~  137 (276)
T 3mgg_A          102 EDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGT  137 (276)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             CCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcE
Confidence            35689999999999999887433   3666677664

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.58  E-value=1.3e-14  Score=104.03  Aligned_cols=117  Identities=15%  Similarity=0.119  Sum_probs=85.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...++..+.. ..++.+|||+|||+|+.+..+++..++.++++++|+++.+++.|++++.. +.     .++++++++|+
T Consensus        67 ~~~ll~~l~~-~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-----~~~i~~~~gda  140 (247)
T 1sui_A           67 EGQFLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDFREGPA  140 (247)
T ss_dssp             HHHHHHHHHH-HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEEEESCH
T ss_pred             HHHHHHHHHH-hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCH
Confidence            3344444432 35668999999999999999999985567999999999999999999987 54     36899999998


Q ss_pred             hhhhHHHhhhc-cCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          95 IKRIETVELMM-KFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~-~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      .+.++.+.... ..++||+|+++.............++.++|+|.
T Consensus       141 ~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~  185 (247)
T 1sui_A          141 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGV  185 (247)
T ss_dssp             HHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCC
T ss_pred             HHHHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeE
Confidence            76444331110 146799999887643333334445677788775

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.58  E-value=1.6e-15  Score=107.40  Aligned_cols=103  Identities=13%  Similarity=0.291  Sum_probs=80.7

Q ss_pred             HHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh
Q psy5757          19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI   98 (139)
Q Consensus        19 ~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~   98 (139)
                      +...+..+++++.+|||+|||+|..+..+++...   +++++|+++.+++.++++...        .+++++++|+.+ +
T Consensus        43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~-~  110 (242)
T 3l8d_A           43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEG--------PDLSFIKGDLSS-L  110 (242)
T ss_dssp             HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCB--------TTEEEEECBTTB-C
T ss_pred             HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhccc--------CCceEEEcchhc-C
Confidence            4455554567889999999999999999999843   999999999999999887533        689999999654 1


Q ss_pred             HHHhhhccCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757          99 ETVELMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus        99 ~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                           +.+.++||+|+++.++||+.++...   .++.++|+|.
T Consensus       111 -----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~  148 (242)
T 3l8d_A          111 -----PFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGY  148 (242)
T ss_dssp             -----SSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEE
T ss_pred             -----CCCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeE
Confidence                 2235689999999999999877432   3566666663

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.58  E-value=2.2e-15  Score=104.48  Aligned_cols=110  Identities=13%  Similarity=0.099  Sum_probs=64.0

Q ss_pred             hhhcccccChHHHHHHHHHhcccC---CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccc
Q psy5757           4 VKIGAAIGGISAILTYLSIIQPHL---NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNAR   80 (139)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~   80 (139)
                      +..+..++.+. ...+.+.+.+.+   .++.+|||+|||+|..+..+++.. +.++++++|+++.+++.|++++...-  
T Consensus         3 ~~~~~~~p~~~-~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~--   78 (215)
T 4dzr_A            3 VGPDCLIPRPD-TEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFG--   78 (215)
T ss_dssp             CSGGGGSCCHH-HHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-----------------
T ss_pred             CCCCccCCCcc-HHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhC--
Confidence            34566666665 344444443322   677899999999999999999997 46699999999999999999887611  


Q ss_pred             cccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757          81 LLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        81 ~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                         . +++++++|+.+.+....  ...++||+|++|+++++..
T Consensus        79 ---~-~~~~~~~d~~~~~~~~~--~~~~~fD~i~~npp~~~~~  115 (215)
T 4dzr_A           79 ---A-VVDWAAADGIEWLIERA--ERGRPWHAIVSNPPYIPTG  115 (215)
T ss_dssp             --------CCHHHHHHHHHHHH--HTTCCBSEEEECCCCCC--
T ss_pred             ---C-ceEEEEcchHhhhhhhh--hccCcccEEEECCCCCCCc
Confidence               2 68888888766333211  1236799999999876543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.58  E-value=7.1e-15  Score=98.74  Aligned_cols=115  Identities=13%  Similarity=0.070  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEc
Q psy5757          13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVAL   92 (139)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~   92 (139)
                      ......+.+.+...++++.+|||+|||+|..+..+++...   +++++|+++.+++.|++++....     . +++++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~-----~-~~~~~~~   95 (171)
T 1ws6_A           25 VRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTG-----L-GARVVAL   95 (171)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHT-----C-CCEEECS
T ss_pred             HHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcC-----C-ceEEEec
Confidence            3345556666653344788999999999999999999864   69999999999999999987721     2 7899999


Q ss_pred             cchhhhHHHhhhccCCceeEEecCcccc-ccccceeeee--eeccCCCC
Q psy5757          93 GMIKRIETVELMMKFDRYDFLPHAPAES-WMNIPVCINY--TATMPEGS  138 (139)
Q Consensus        93 d~~~~~~~~~~~~~~~~~D~vi~~~~~~-~~~~p~~~~~--~~~~p~g~  138 (139)
                      |+.+......  ...++||+|++++++| ...+......  +.++|+|.
T Consensus        96 d~~~~~~~~~--~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~  142 (171)
T 1ws6_A           96 PVEVFLPEAK--AQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGL  142 (171)
T ss_dssp             CHHHHHHHHH--HTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEE
T ss_pred             cHHHHHHhhh--ccCCceEEEEECCCCchhHHHHHHHHHhhcccCCCcE
Confidence            9766333221  1234799999999886 1112222222  55666663

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.57  E-value=6e-15  Score=107.17  Aligned_cols=98  Identities=17%  Similarity=0.255  Sum_probs=79.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++...   +++++|+++.+++.|++++.. +.     .++++++++|+.+. .    ...
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-~----~~~  133 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGV-----SDNMQFIHCAAQDV-A----SHL  133 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CC-----GGGEEEEESCGGGT-G----GGC
T ss_pred             CCCCEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEEcCHHHh-h----hhc
Confidence            4567999999999999999999843   999999999999999999887 44     36899999996552 1    123


Q ss_pred             CCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      .++||+|+++.++||+.++...   .++.++|+|.
T Consensus       134 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~  168 (285)
T 4htf_A          134 ETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGV  168 (285)
T ss_dssp             SSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEE
T ss_pred             CCCceEEEECchhhcccCHHHHHHHHHHHcCCCeE
Confidence            5789999999999999887433   3677777774

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.57  E-value=1.1e-14  Score=102.76  Aligned_cols=101  Identities=23%  Similarity=0.293  Sum_probs=82.2

Q ss_pred             hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCC
Q psy5757           6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDG   85 (139)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~   85 (139)
                      .++.+..+.....+++.+.  ..++.+|||+|||+|..+..+++...   +++++|+++.+++.+++++..       ..
T Consensus        49 ~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~-------~~  116 (231)
T 1vbf_A           49 PGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSY-------YN  116 (231)
T ss_dssp             TTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTT-------CS
T ss_pred             CCCccCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhh-------cC
Confidence            3556677777888888774  57888999999999999999999873   999999999999999998765       13


Q ss_pred             cEEEEEccchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757          86 HIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        86 ~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                      +++++.+|+.+.+.      ..++||+|+++.++|++.+
T Consensus       117 ~v~~~~~d~~~~~~------~~~~fD~v~~~~~~~~~~~  149 (231)
T 1vbf_A          117 NIKLILGDGTLGYE------EEKPYDRVVVWATAPTLLC  149 (231)
T ss_dssp             SEEEEESCGGGCCG------GGCCEEEEEESSBBSSCCH
T ss_pred             CeEEEECCcccccc------cCCCccEEEECCcHHHHHH
Confidence            78999999655221      2357999999999998764

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.57  E-value=4.7e-15  Score=104.67  Aligned_cols=97  Identities=15%  Similarity=0.267  Sum_probs=79.1

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++..       ..+++++++|+.+ +     .. 
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~-~-----~~-  106 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRG-------NLKVKYIEADYSK-Y-----DF-  106 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCS-------CTTEEEEESCTTT-C-----CC-
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhcc-------CCCEEEEeCchhc-c-----CC-
Confidence            4677899999999999999999997 466999999999999999998755       2489999999654 1     11 


Q ss_pred             CCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      .++||+|+++.++|++.++.     ...++.++|+|.
T Consensus       107 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  143 (234)
T 3dtn_A          107 EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGI  143 (234)
T ss_dssp             CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             CCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcE
Confidence            26899999999999998764     334677788774

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.57  E-value=6.5e-15  Score=105.54  Aligned_cols=114  Identities=15%  Similarity=0.215  Sum_probs=85.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...++..+.. ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++.. +.     .++++++++|+
T Consensus        51 ~~~~l~~l~~-~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----~~~v~~~~~d~  124 (248)
T 3tfw_A           51 QGQFLALLVR-LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV-----DQRVTLREGPA  124 (248)
T ss_dssp             HHHHHHHHHH-HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC-----TTTEEEEESCH
T ss_pred             HHHHHHHHHh-hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCH
Confidence            3444444432 45678999999999999999999985577999999999999999999987 55     35899999997


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      .+.++.+   ...++||+|++..............++.++|+|.
T Consensus       125 ~~~l~~~---~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~  165 (248)
T 3tfw_A          125 LQSLESL---GECPAFDLIFIDADKPNNPHYLRWALRYSRPGTL  165 (248)
T ss_dssp             HHHHHTC---CSCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCE
T ss_pred             HHHHHhc---CCCCCeEEEEECCchHHHHHHHHHHHHhcCCCeE
Confidence            6533321   1234799999887655544445555778888874

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.56  E-value=2e-14  Score=100.31  Aligned_cols=111  Identities=14%  Similarity=0.045  Sum_probs=83.2

Q ss_pred             ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEE
Q psy5757          10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIK   88 (139)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~   88 (139)
                      ++.......++..+.  +.++.+|||+|||+|.++..+++..   ++|+++|+++.+++.|+++++. +.     ..+++
T Consensus        38 ~~~~~~~~~~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~g~-----~~~v~  107 (204)
T 3njr_A           38 ITKSPMRALTLAALA--PRRGELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDTYGL-----SPRMR  107 (204)
T ss_dssp             CCCHHHHHHHHHHHC--CCTTCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTC-----TTTEE
T ss_pred             CCcHHHHHHHHHhcC--CCCCCEEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCC-----CCCEE
Confidence            344455556666664  5788999999999999999999983   3999999999999999999887 54     23899


Q ss_pred             EEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          89 FVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        89 ~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      ++.+|+.+.+.      ...+||+|+++..+.. . .....++.++|+|.
T Consensus       108 ~~~~d~~~~~~------~~~~~D~v~~~~~~~~-~-~l~~~~~~LkpgG~  149 (204)
T 3njr_A          108 AVQGTAPAALA------DLPLPEAVFIGGGGSQ-A-LYDRLWEWLAPGTR  149 (204)
T ss_dssp             EEESCTTGGGT------TSCCCSEEEECSCCCH-H-HHHHHHHHSCTTCE
T ss_pred             EEeCchhhhcc------cCCCCCEEEECCcccH-H-HHHHHHHhcCCCcE
Confidence            99999765322      1246999999875521 1 33444677788874

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.56  E-value=9.6e-15  Score=105.18  Aligned_cols=103  Identities=12%  Similarity=0.049  Sum_probs=75.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh----------h-cccc-ccCCcEEEEEccch
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH----------S-NARL-LTDGHIKFVALGMI   95 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~----------~-~~~~-~~~~~i~~~~~d~~   95 (139)
                      .++.+|||+|||+|..+..|++...   +|+|+|+|+.+++.|+++...          + .... -...+++++++|+.
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~  143 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF  143 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence            5778999999999999999999864   999999999999999876531          0 0000 00257999999976


Q ss_pred             hhhHHHhhhccCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      + +.   .. ..++||+|+++.++++++.+.     ...++.++|+|.
T Consensus       144 ~-l~---~~-~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~  186 (252)
T 2gb4_A          144 D-LP---RA-NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQ  186 (252)
T ss_dssp             T-GG---GG-CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEE
T ss_pred             c-CC---cc-cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeE
Confidence            5 22   11 126899999999999987543     234677777774

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.56  E-value=5.8e-15  Score=101.76  Aligned_cols=84  Identities=12%  Similarity=0.203  Sum_probs=69.8

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .++++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++.. +.     ..+++++++|+.+ +.   . 
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~---~-   88 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL-----IDRVTLIKDGHQN-MD---K-   88 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC-----GGGEEEECSCGGG-GG---G-
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCeEEEECCHHH-Hh---h-
Confidence            367889999999999999999999976567999999999999999999887 43     3689999999655 22   1 


Q ss_pred             ccCCceeEEecCccc
Q psy5757         105 MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~  119 (139)
                      ...++||+|++++++
T Consensus        89 ~~~~~fD~v~~~~~~  103 (197)
T 3eey_A           89 YIDCPVKAVMFNLGY  103 (197)
T ss_dssp             TCCSCEEEEEEEESB
T ss_pred             hccCCceEEEEcCCc
Confidence            123679999999865

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.56  E-value=3.8e-15  Score=106.15  Aligned_cols=102  Identities=17%  Similarity=0.155  Sum_probs=78.1

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +++|++|||+|||+|.++..+++..++.++|+++|+++++++.+++++..       ..|+..+.+|..+ ...+  ...
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-------~~ni~~V~~d~~~-p~~~--~~~  144 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-------RRNIFPILGDARF-PEKY--RHL  144 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-------CTTEEEEESCTTC-GGGG--TTT
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-------hcCeeEEEEeccC-cccc--ccc
Confidence            68999999999999999999999998899999999999999999888766       3688889888665 3322  223


Q ss_pred             CCceeEEecCccccccccc-eeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIP-VCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p-~~~~~~~~~p~g~  138 (139)
                      .+.+|+|++....++.... .....+.++|+|.
T Consensus       145 ~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~  177 (233)
T 4df3_A          145 VEGVDGLYADVAQPEQAAIVVRNARFFLRDGGY  177 (233)
T ss_dssp             CCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEE
T ss_pred             cceEEEEEEeccCChhHHHHHHHHHHhccCCCE
Confidence            4679999988776653221 2222456666664

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.56  E-value=1.2e-15  Score=109.16  Aligned_cols=116  Identities=16%  Similarity=0.184  Sum_probs=83.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...++..+.. ..++.+|||+|||+|..+..+++..++.++|+++|+++.+++.|++++.. +.     .++++++++|+
T Consensus        48 ~~~~l~~l~~-~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~gda  121 (242)
T 3r3h_A           48 QAQFMQMLIR-LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ-----EHKIKLRLGPA  121 (242)
T ss_dssp             HHHHHHHHHH-HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC-----TTTEEEEESCH
T ss_pred             HHHHHHHHHh-hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCH
Confidence            3444444432 45668999999999999999999886578999999999999999999988 55     36899999998


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEG  137 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g  137 (139)
                      .+.+..+......++||+|+++.............++.++|+|
T Consensus       122 ~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG  164 (242)
T 3r3h_A          122 LDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKG  164 (242)
T ss_dssp             HHHHHHHHHHHCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEE
T ss_pred             HHHHHHHhhccCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCe
Confidence            7644433211124679999998764333332333355555555

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.56  E-value=7.9e-15  Score=106.79  Aligned_cols=113  Identities=17%  Similarity=0.227  Sum_probs=88.8

Q ss_pred             ChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEE
Q psy5757          12 GISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVA   91 (139)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~   91 (139)
                      .+.....+.+.+. .+.++.+|||+|||+|..+..+++..+..++++++|+++.+++.|++++...      ..++++++
T Consensus         6 ~~~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~v~~~~   78 (284)
T 3gu3_A            6 NDDYVSFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL------PYDSEFLE   78 (284)
T ss_dssp             CHHHHHHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS------SSEEEEEE
T ss_pred             chHHHHHHHHHHh-ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc------CCceEEEE
Confidence            4555667777765 3577899999999999999999998754469999999999999999998761      13899999


Q ss_pred             ccchhhhHHHhhhccCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757          92 LGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus        92 ~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      +|+.+ +.   .   .++||+|+++.++|++.++...   .++.++|+|.
T Consensus        79 ~d~~~-~~---~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~  121 (284)
T 3gu3_A           79 GDATE-IE---L---NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGK  121 (284)
T ss_dssp             SCTTT-CC---C---SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEE
T ss_pred             cchhh-cC---c---CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCE
Confidence            99665 22   1   3589999999999999877433   3667777764

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.56  E-value=1.4e-14  Score=103.64  Aligned_cols=87  Identities=15%  Similarity=0.141  Sum_probs=66.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh-hHHHhhhcc
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR-IETVELMMK  106 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~  106 (139)
                      ++.+|||+|||+|..+..++... +.++++++|+++.+++.|++++.. ++     ..+++++++|+.+. ...+  ...
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~--~~~  136 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNL-----SDLIKVVKVPQKTLLMDAL--KEE  136 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTCSSTTTS--TTC
T ss_pred             CCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCC-----CccEEEEEcchhhhhhhhh--hcc
Confidence            56799999999999999999876 245999999999999999999987 54     24599999996541 1111  101


Q ss_pred             -CCceeEEecCccccccc
Q psy5757         107 -FDRYDFLPHAPAESWMN  123 (139)
Q Consensus       107 -~~~~D~vi~~~~~~~~~  123 (139)
                       .++||+|++|+++++..
T Consensus       137 ~~~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          137 SEIIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             CSCCBSEEEECCCCC---
T ss_pred             cCCcccEEEECCCCccCc
Confidence             25799999999988654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.56  E-value=2.8e-15  Score=110.22  Aligned_cols=105  Identities=17%  Similarity=0.180  Sum_probs=82.5

Q ss_pred             HhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHH
Q psy5757          22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIET  100 (139)
Q Consensus        22 ~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~  100 (139)
                      .+...+.++.+|||+|||+|..+..++....+.++++++|+++.+++.+++++.. +.     ..+++++++|+.+ +  
T Consensus       111 ~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~--  182 (305)
T 3ocj_A          111 ALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL-----AGQITLHRQDAWK-L--  182 (305)
T ss_dssp             HHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT-----GGGEEEEECCGGG-C--
T ss_pred             HHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECchhc-C--
Confidence            3333467889999999999999999974444567999999999999999999887 54     3569999999655 1  


Q ss_pred             HhhhccCCceeEEecCcccccccccee------eeeeeccCCCC
Q psy5757         101 VELMMKFDRYDFLPHAPAESWMNIPVC------INYTATMPEGS  138 (139)
Q Consensus       101 ~~~~~~~~~~D~vi~~~~~~~~~~p~~------~~~~~~~p~g~  138 (139)
                         ..+ ++||+|+++.++|+++++..      ..++.++|+|.
T Consensus       183 ---~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  222 (305)
T 3ocj_A          183 ---DTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGA  222 (305)
T ss_dssp             ---CCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEE
T ss_pred             ---Ccc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeE
Confidence               122 78999999999999987753      33667777774

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.55  E-value=4.3e-14  Score=103.95  Aligned_cols=100  Identities=19%  Similarity=0.154  Sum_probs=80.4

Q ss_pred             hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757           5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT   83 (139)
Q Consensus         5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~   83 (139)
                      .+|+ ++..+.++.++++.+.  +.++.+|||+|||+|.++..+++...   +|+++|+|+.+++.+++++..       
T Consensus        27 ~~GQnfL~d~~i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~-------   94 (295)
T 3gru_A           27 KLGQCFLIDKNFVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKEL-------   94 (295)
T ss_dssp             ---CCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHH-------
T ss_pred             ccCccccCCHHHHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhcc-------
Confidence            4577 6667788888888886  57888999999999999999999864   999999999999999998864       


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~  122 (139)
                      .++++++++|+.+ +.   .  +...||+|++|.++++.
T Consensus        95 ~~~v~vi~gD~l~-~~---~--~~~~fD~Iv~NlPy~is  127 (295)
T 3gru_A           95 YNNIEIIWGDALK-VD---L--NKLDFNKVVANLPYQIS  127 (295)
T ss_dssp             CSSEEEEESCTTT-SC---G--GGSCCSEEEEECCGGGH
T ss_pred             CCCeEEEECchhh-CC---c--ccCCccEEEEeCccccc
Confidence            3789999999765 11   1  22469999999987654

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.55  E-value=3.5e-15  Score=105.57  Aligned_cols=103  Identities=17%  Similarity=0.207  Sum_probs=81.3

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+.+.+.+ ..++.+|||+|||+|.++..+++...   +++++|+++.+++.|+++..         .+++++++|+.
T Consensus        30 ~~~~~~~l~~-~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~---------~~v~~~~~d~~   96 (250)
T 2p7i_A           30 HPFMVRAFTP-FFRPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLK---------DGITYIHSRFE   96 (250)
T ss_dssp             HHHHHHHHGG-GCCSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSC---------SCEEEEESCGG
T ss_pred             HHHHHHHHHh-hcCCCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhh---------CCeEEEEccHH
Confidence            4556666653 35678999999999999999998764   89999999999999988742         27899999965


Q ss_pred             hhhHHHhhhccCCceeEEecCccccccccceee---ee-eeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMNIPVCI---NY-TATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~-~~~~p~g~  138 (139)
                      +.       .+.++||+|+++.++||+.+|...   .+ +.++|+|.
T Consensus        97 ~~-------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~  136 (250)
T 2p7i_A           97 DA-------QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGR  136 (250)
T ss_dssp             GC-------CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEE
T ss_pred             Hc-------CcCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCE
Confidence            41       235689999999999999887433   36 77788774

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.55  E-value=1.5e-14  Score=105.77  Aligned_cols=100  Identities=12%  Similarity=0.172  Sum_probs=74.3

Q ss_pred             hcccccChHHHHHHHHHhcccC--CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757           6 IGAAIGGISAILTYLSIIQPHL--NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL   82 (139)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~   82 (139)
                      .+..++.+. ...+.+.+...+  .++.+|||+|||+|..+..++..  +.++++++|+|+.+++.|++++.. +.    
T Consensus        99 ~~~lipr~~-te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l----  171 (284)
T 1nv8_A           99 EGVFVPRPE-TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGV----  171 (284)
T ss_dssp             TTSCCCCTT-HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTC----
T ss_pred             CCceecChh-HHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCC----
Confidence            345555554 333333333222  36679999999999999999998  466999999999999999999988 54    


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCce---eEEecCccccc
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRY---DFLPHAPAESW  121 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~---D~vi~~~~~~~  121 (139)
                       ..+++++++|+.+.+.        ++|   |+|++||++..
T Consensus       172 -~~~v~~~~~D~~~~~~--------~~f~~~D~IvsnPPyi~  204 (284)
T 1nv8_A          172 -SDRFFVRKGEFLEPFK--------EKFASIEMILSNPPYVK  204 (284)
T ss_dssp             -TTSEEEEESSTTGGGG--------GGTTTCCEEEECCCCBC
T ss_pred             -CCceEEEECcchhhcc--------cccCCCCEEEEcCCCCC
Confidence             2359999999765221        356   99999988654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.55  E-value=9e-15  Score=103.16  Aligned_cols=101  Identities=14%  Similarity=0.178  Sum_probs=77.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++.. +...++|+|+++.+++.|++++.. ++      .|+.++++|+.+.++.   ..+
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l------~nv~~~~~Da~~~l~~---~~~  102 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGL------SNLRVMCHDAVEVLHK---MIP  102 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTC------SSEEEECSCHHHHHHH---HSC
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHH---HcC
Confidence            367899999999999999999987 467899999999999999999887 54      7899999997663332   234


Q ss_pred             CCceeEEecCcccccccc-----------ceeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNI-----------PVCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~-----------p~~~~~~~~~p~g~  138 (139)
                      .+++|.|+++.+..|...           .....++.++|+|.
T Consensus       103 ~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~  145 (218)
T 3dxy_A          103 DNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGV  145 (218)
T ss_dssp             TTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEE
T ss_pred             CCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcE
Confidence            678999999855444332           12333566777764

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.55  E-value=8.8e-15  Score=102.52  Aligned_cols=108  Identities=13%  Similarity=0.202  Sum_probs=80.2

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+.+.+...+.++.+|||+|||+|..+..+++...   +++++|+++.+++.++++.....      .+++++++|+.
T Consensus        25 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~   95 (227)
T 1ve3_A           25 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE------SNVEFIVGDAR   95 (227)
T ss_dssp             HHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCTT
T ss_pred             HHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC------CCceEEECchh
Confidence            3445555555566788999999999999999999874   99999999999999999887621      57899999965


Q ss_pred             hhhHHHhhhccCCceeEEecCcc--ccccccce---eeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPA--ESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~--~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      + +     ..+.++||+|+++.+  +++..++.   ...++.++|+|.
T Consensus        96 ~-~-----~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~  137 (227)
T 1ve3_A           96 K-L-----SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGK  137 (227)
T ss_dssp             S-C-----CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEE
T ss_pred             c-C-----CCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcE
Confidence            4 1     123468999999999  55554432   223556666663

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.55  E-value=4.8e-15  Score=112.35  Aligned_cols=111  Identities=14%  Similarity=0.179  Sum_probs=82.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc--ccccCCcEEEEEccchhhhHHH-h
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA--RLLTDGHIKFVALGMIKRIETV-E  102 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~--~~~~~~~i~~~~~d~~~~~~~~-~  102 (139)
                      ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++.. ...  -++..++++++++|+.+ +... .
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~-l~~~~~  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIEN-LATAEP  159 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTC-GGGCBS
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHH-hhhccc
Confidence            35778999999999999999999986677999999999999999998764 110  00112689999999665 2110 0


Q ss_pred             hhccCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757         103 LMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      ...+.++||+|+++.++||+.++...   .++.++|+|.
T Consensus       160 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~  198 (383)
T 4fsd_A          160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGE  198 (383)
T ss_dssp             CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCE
Confidence            02345689999999999999886433   3677777774

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.54  E-value=4.7e-15  Score=106.13  Aligned_cols=97  Identities=28%  Similarity=0.323  Sum_probs=77.2

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +.++.+|||+|||+|..+..+++..+  ++++++|+++.+++.++++...       ..+++++++|+.+ +     +.+
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~-~-----~~~  117 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKYG--AHTHGIDICSNIVNMANERVSG-------NNKIIFEANDILT-K-----EFP  117 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHTCCS-------CTTEEEEECCTTT-C-----CCC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhhc-------CCCeEEEECcccc-C-----CCC
Confidence            46788999999999999999999863  3999999999999999988655       2689999999654 1     223


Q ss_pred             CCceeEEecCcccccc--ccce---eeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWM--NIPV---CINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~--~~p~---~~~~~~~~p~g~  138 (139)
                      .++||+|+++.++|++  .++.   ...++.++|+|.
T Consensus       118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~  154 (266)
T 3ujc_A          118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGT  154 (266)
T ss_dssp             TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCE
Confidence            5789999999999999  5543   333666677664

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.54  E-value=1.1e-14  Score=107.32  Aligned_cols=98  Identities=10%  Similarity=0.086  Sum_probs=78.2

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.+|||+|||+|.++..+++..+  ++++++|+++.+++.|++++.. ++     ..+++++++|+.+ +     +.
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~-----~~  181 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFG--SRVEGVTLSAAQADFGNRRARELRI-----DDHVRSRVCNMLD-T-----PF  181 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEECCTTS-C-----CC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEECChhc-C-----CC
Confidence            46788999999999999999999853  3999999999999999999987 54     3589999999654 1     22


Q ss_pred             cCCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      +.++||+|+++.++|++. +.   ...++.++|+|.
T Consensus       182 ~~~~fD~V~~~~~l~~~~-~~~~l~~~~~~LkpgG~  216 (312)
T 3vc1_A          182 DKGAVTASWNNESTMYVD-LHDLFSEHSRFLKVGGR  216 (312)
T ss_dssp             CTTCEEEEEEESCGGGSC-HHHHHHHHHHHEEEEEE
T ss_pred             CCCCEeEEEECCchhhCC-HHHHHHHHHHHcCCCcE
Confidence            356899999999999984 32   223666777764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.54  E-value=8.3e-15  Score=105.45  Aligned_cols=85  Identities=16%  Similarity=0.324  Sum_probs=68.4

Q ss_pred             CC-CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          27 LN-ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        27 ~~-~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .. ++.+|||+|||+|..+..++++...  +++++|+++.+++.|++++.. ++     ..+++++++|+.+..    ..
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~-----~~~v~~~~~D~~~~~----~~  114 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQL-----EDQIEIIEYDLKKIT----DL  114 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTC-----TTTEEEECSCGGGGG----GT
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCC-----cccEEEEECcHHHhh----hh
Confidence            56 7899999999999999999998642  999999999999999999987 54     357999999976522    12


Q ss_pred             ccCCceeEEecCcccccc
Q psy5757         105 MKFDRYDFLPHAPAESWM  122 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~  122 (139)
                      .+.++||+|++|++++..
T Consensus       115 ~~~~~fD~Ii~npPy~~~  132 (259)
T 3lpm_A          115 IPKERADIVTCNPPYFAT  132 (259)
T ss_dssp             SCTTCEEEEEECCCC---
T ss_pred             hccCCccEEEECCCCCCC
Confidence            235689999999997554

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.54  E-value=2.2e-14  Score=101.00  Aligned_cols=88  Identities=14%  Similarity=0.157  Sum_probs=70.1

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++.. +.     ..+++++++|+.+.+..+....
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~~~~~~~~~~~  141 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----EHKIDLRLKPALETLDELLAAG  141 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----TTTEEEEESCHHHHHHHHHHTT
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CCeEEEEEcCHHHHHHHHHhcC
Confidence            46678999999999999999999875467999999999999999999887 54     3689999999876444432211


Q ss_pred             cCCceeEEecCccc
Q psy5757         106 KFDRYDFLPHAPAE  119 (139)
Q Consensus       106 ~~~~~D~vi~~~~~  119 (139)
                      ..++||+|++++..
T Consensus       142 ~~~~~D~v~~d~~~  155 (229)
T 2avd_A          142 EAGTFDVAVVDADK  155 (229)
T ss_dssp             CTTCEEEEEECSCS
T ss_pred             CCCCccEEEECCCH
Confidence            11579999998763

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.54  E-value=1.3e-14  Score=101.52  Aligned_cols=100  Identities=17%  Similarity=0.219  Sum_probs=78.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++.. +..+++|+|+++.+++.|++++.. +.      .+++++++|+.+ +..   ..+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~~~~~~~------~~v~~~~~d~~~-~~~---~~~  108 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSD-LTD---YFE  108 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSC-GGG---TSC
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHHHHHcCC------CCEEEEeCCHHH-HHh---hcC
Confidence            457899999999999999999987 466999999999999999999887 44      789999999765 321   123


Q ss_pred             CCceeEEecCcccccccc-----------ceeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNI-----------PVCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~-----------p~~~~~~~~~p~g~  138 (139)
                      .++||+|+++++.+|...           ......+.++|+|.
T Consensus       109 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  151 (214)
T 1yzh_A          109 DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGE  151 (214)
T ss_dssp             TTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCE
T ss_pred             CCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcE
Confidence            467999999988766442           22333667788874

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.54  E-value=3.1e-15  Score=109.60  Aligned_cols=109  Identities=20%  Similarity=0.285  Sum_probs=77.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccc--------------------------
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNAR--------------------------   80 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~--------------------------   80 (139)
                      .++++|||+|||+|..+..+++..+ ..+++|+|+++.+++.|++++.. +...                          
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            4678999999999999999999974 45999999999999999998765 2100                          


Q ss_pred             -------------------------cc-cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc------cc---
Q psy5757          81 -------------------------LL-TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN------IP---  125 (139)
Q Consensus        81 -------------------------~~-~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~------~p---  125 (139)
                                               .. -..+++++++|+.+....+ .....++||+|++..+++|+.      ++   
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~-~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~  202 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDL-VEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRM  202 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHH-HTTCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCcccc-ccccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence                                     00 0048999999976532211 122356899999999998874      22   


Q ss_pred             eeeeeeeccCCCC
Q psy5757         126 VCINYTATMPEGS  138 (139)
Q Consensus       126 ~~~~~~~~~p~g~  138 (139)
                      ....++.++|+|.
T Consensus       203 l~~~~~~LkpGG~  215 (292)
T 3g07_A          203 FRRIYRHLRPGGI  215 (292)
T ss_dssp             HHHHHHHEEEEEE
T ss_pred             HHHHHHHhCCCcE
Confidence            3444777777774

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.54  E-value=1.7e-14  Score=102.91  Aligned_cols=95  Identities=18%  Similarity=0.256  Sum_probs=76.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++.+|||+|||+|..+..+++....  +++++|+++.+++.++++...        .+++++.+|+.+ +     +.+.
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~-~-----~~~~  106 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTS--------PVVCYEQKAIED-I-----AIEP  106 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCC--------TTEEEEECCGGG-C-----CCCT
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhcc--------CCeEEEEcchhh-C-----CCCC
Confidence            37789999999999999999998642  899999999999999988653        689999999654 1     2235


Q ss_pred             CceeEEecCccccccccceee---eeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      ++||+|+++.++|++.++...   .++.++|+|.
T Consensus       107 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~  140 (253)
T 3g5l_A          107 DAYNVVLSSLALHYIASFDDICKKVYINLKSSGS  140 (253)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             CCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcE
Confidence            789999999999999876433   3666777764

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.54  E-value=1e-14  Score=104.18  Aligned_cols=94  Identities=13%  Similarity=0.248  Sum_probs=76.2

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..++.+|||+|||+|..+..+++.. +.++++++|+++.+++.++++.          ++++++++|+.+    +  . +
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~----~--~-~   92 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRL----------PNTNFGKADLAT----W--K-P   92 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHS----------TTSEEEECCTTT----C--C-C
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC----------CCcEEEECChhh----c--C-c
Confidence            3577899999999999999999987 3569999999999999998872          578899999654    1  1 3


Q ss_pred             CCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      .++||+|+++.++||+.++...   .++.++|+|.
T Consensus        93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~  127 (259)
T 2p35_A           93 AQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGV  127 (259)
T ss_dssp             SSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEE
T ss_pred             cCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeE
Confidence            5679999999999999876433   3677777764

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.53  E-value=2e-14  Score=102.18  Aligned_cols=121  Identities=9%  Similarity=0.059  Sum_probs=83.9

Q ss_pred             ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEE
Q psy5757          10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIK   88 (139)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~   88 (139)
                      ...+.....+...+.  ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++.. +.     ..+++
T Consensus        43 ~~~~~~~~~l~~l~~--~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----~~~v~  115 (239)
T 2hnk_A           43 QISPEEGQFLNILTK--ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL-----ENKIF  115 (239)
T ss_dssp             SCCHHHHHHHHHHHH--HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEE
T ss_pred             ccCHHHHHHHHHHHH--hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCEE
Confidence            445554444444443  45678999999999999999999975466999999999999999999887 54     24599


Q ss_pred             EEEccchhhhHHHhhh---------cc-C-CceeEEecCccccccccceeeeeeeccCCC
Q psy5757          89 FVALGMIKRIETVELM---------MK-F-DRYDFLPHAPAESWMNIPVCINYTATMPEG  137 (139)
Q Consensus        89 ~~~~d~~~~~~~~~~~---------~~-~-~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g  137 (139)
                      ++.+|+.+.+..+...         .+ . ++||+|+++...+..........+.++|+|
T Consensus       116 ~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG  175 (239)
T 2hnk_A          116 LKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGG  175 (239)
T ss_dssp             EEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEE
T ss_pred             EEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCe
Confidence            9999977644432110         11 1 679999998765443333333344445544

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.53  E-value=1.8e-14  Score=103.86  Aligned_cols=102  Identities=16%  Similarity=0.264  Sum_probs=78.3

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHH------HHHHHHHHHHh-hccccccCCcEEEEEcc-chhhh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQ------LVNSSIQNILH-SNARLLTDGHIKFVALG-MIKRI   98 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~------~~~~a~~~~~~-~~~~~~~~~~i~~~~~d-~~~~~   98 (139)
                      +.++.+|||+|||+|..+..+++..++.++++++|+++.      +++.|++++.. +.     .++++++++| +..  
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~--  113 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL-----GDRLTVHFNTNLSD--  113 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT-----GGGEEEECSCCTTT--
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC-----CCceEEEECChhhh--
Confidence            578899999999999999999999755569999999987      89999999877 43     3589999987 322  


Q ss_pred             HHHhhhccCCceeEEecCccccccccceeee--eeeccC-CC
Q psy5757          99 ETVELMMKFDRYDFLPHAPAESWMNIPVCIN--YTATMP-EG  137 (139)
Q Consensus        99 ~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~--~~~~~p-~g  137 (139)
                      ..  .+.+.++||+|+++.++|++.++....  ++.++| +|
T Consensus       114 ~~--~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG  153 (275)
T 3bkx_A          114 DL--GPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCD  153 (275)
T ss_dssp             CC--GGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCS
T ss_pred             cc--CCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCC
Confidence            11  122356899999999999998875422  334444 55

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=1.7e-14  Score=102.51  Aligned_cols=107  Identities=12%  Similarity=0.091  Sum_probs=81.2

Q ss_pred             HHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh
Q psy5757          19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI   98 (139)
Q Consensus        19 ~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~   98 (139)
                      .+..+...+.++.+|||+|||+|..+..+++...   +++++|+|+.+++.++++...        .+++++++|+.+ +
T Consensus        46 ~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~-~  113 (245)
T 3ggd_A           46 DLPRFELLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTA--------ANISYRLLDGLV-P  113 (245)
T ss_dssp             HHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCC--------TTEEEEECCTTC-H
T ss_pred             HHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcc--------cCceEEECcccc-c
Confidence            3444444567888999999999999999999885   899999999999999988633        589999999776 2


Q ss_pred             HHHhhhcc-CCceeEEecCccccccc--cc---eeeeeeeccCCCC
Q psy5757          99 ETVELMMK-FDRYDFLPHAPAESWMN--IP---VCINYTATMPEGS  138 (139)
Q Consensus        99 ~~~~~~~~-~~~~D~vi~~~~~~~~~--~p---~~~~~~~~~p~g~  138 (139)
                      ... .... ...||+|+++.++|++.  ++   ....++.++|+|.
T Consensus       114 ~~~-~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  158 (245)
T 3ggd_A          114 EQA-AQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGA  158 (245)
T ss_dssp             HHH-HHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCE
T ss_pred             ccc-cccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCE
Confidence            211 1111 12489999999999998  33   2344778888885

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.53  E-value=2.7e-14  Score=100.14  Aligned_cols=100  Identities=15%  Similarity=0.230  Sum_probs=77.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++.. +..+++|+|+++.+++.|++++.. ++      .|++++++|+.+ +..   ..+
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~------~nv~~~~~d~~~-l~~---~~~  105 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADT-LTD---VFE  105 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGG-HHH---HCC
T ss_pred             CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCC------CCEEEEeCCHHH-HHh---hcC
Confidence            467899999999999999999987 467999999999999999999887 44      789999999765 321   133


Q ss_pred             CCceeEEecCcccccccc-----------ceeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNI-----------PVCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~-----------p~~~~~~~~~p~g~  138 (139)
                      .++||.|+++.+..|...           ......+.++|+|.
T Consensus       106 ~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~  148 (213)
T 2fca_A          106 PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGS  148 (213)
T ss_dssp             TTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCE
T ss_pred             cCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCE
Confidence            567999988766555432           13334677888885

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.53  E-value=4.1e-14  Score=100.76  Aligned_cols=116  Identities=14%  Similarity=0.114  Sum_probs=81.1

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...++..+.. ..++++|||+|||+|+.+..+++..++.++++++|+++.+++.|++++.. +.     ..+++++++|+
T Consensus        58 ~~~~l~~l~~-~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~gda  131 (237)
T 3c3y_A           58 AGQLMSFVLK-LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV-----EHKINFIESDA  131 (237)
T ss_dssp             HHHHHHHHHH-HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCH
T ss_pred             HHHHHHHHHH-hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCH
Confidence            3444444432 35668999999999999999999986578999999999999999999987 54     35799999998


Q ss_pred             hhhhHHHhhhc-cCCceeEEecCccccccccceeeeeeeccCCC
Q psy5757          95 IKRIETVELMM-KFDRYDFLPHAPAESWMNIPVCINYTATMPEG  137 (139)
Q Consensus        95 ~~~~~~~~~~~-~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g  137 (139)
                      .+.++.+.... +.++||+|++...............+.++|+|
T Consensus       132 ~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG  175 (237)
T 3c3y_A          132 MLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGG  175 (237)
T ss_dssp             HHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEE
T ss_pred             HHHHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCe
Confidence            77444332111 14679999988653322222222334444544

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.53  E-value=2.7e-14  Score=103.71  Aligned_cols=96  Identities=16%  Similarity=0.140  Sum_probs=78.2

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.+|||+|||+|..+..+++..+.  +++++|+|+.+++.+++++.. +.     ..+++++.+|+.+    +    
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvd~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~----~----  126 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDV--NVVGLTLSKNQANHVQQLVANSEN-----LRSKRVLLAGWEQ----F----  126 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTCCC-----CSCEEEEESCGGG----C----
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC-----CCCeEEEECChhh----C----
Confidence            467889999999999999999977643  999999999999999999877 44     3689999999533    1    


Q ss_pred             cCCceeEEecCccccccc--cce---eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMN--IPV---CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~--~p~---~~~~~~~~p~g~  138 (139)
                      + ++||+|++..++|++.  ++.   ....+.++|+|.
T Consensus       127 ~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  163 (287)
T 1kpg_A          127 D-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGV  163 (287)
T ss_dssp             C-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCE
T ss_pred             C-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCE
Confidence            2 6799999999999994  332   334778889885

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.53  E-value=3.5e-14  Score=96.68  Aligned_cols=113  Identities=12%  Similarity=0.175  Sum_probs=85.7

Q ss_pred             ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEE
Q psy5757          10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIK   88 (139)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~   88 (139)
                      .+.......++..+.  ..++.+|||+|||+|..+..+++..   .+++++|+++.+++.+++++.. +.     ..+++
T Consensus        16 ~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~~~   85 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGL-----GDNVT   85 (192)
T ss_dssp             CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTC-----CTTEE
T ss_pred             CChHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCC-----CcceE
Confidence            344555566666664  5788899999999999999999987   3999999999999999999877 33     26899


Q ss_pred             EEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          89 FVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        89 ~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      ++.+|+.+.++      ..++||+|+++.++++.........+.++|+|.
T Consensus        86 ~~~~d~~~~~~------~~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~  129 (192)
T 1l3i_A           86 LMEGDAPEALC------KIPDIDIAVVGGSGGELQEILRIIKDKLKPGGR  129 (192)
T ss_dssp             EEESCHHHHHT------TSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEE
T ss_pred             EEecCHHHhcc------cCCCCCEEEECCchHHHHHHHHHHHHhcCCCcE
Confidence            99999654221      124799999999877766555555666666653

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.53  E-value=1.5e-14  Score=98.05  Aligned_cols=93  Identities=16%  Similarity=0.196  Sum_probs=72.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+.+.+.+ ..++.+|||+|||+|..+..+++..  ..+++++|+++.+++.|++++.. ++     ..+++++.+|+
T Consensus        19 ~~~~~~~l~~-~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d~   90 (177)
T 2esr_A           19 RGAIFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKA-----ENRFTLLKMEA   90 (177)
T ss_dssp             HHHHHHHHCS-CCCSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTC-----GGGEEEECSCH
T ss_pred             HHHHHHHHHh-hcCCCeEEEeCCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECcH
Confidence            4455555542 4577899999999999999999873  34999999999999999999987 44     25799999996


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccc
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      .+.+.     ...++||+|++++++++
T Consensus        91 ~~~~~-----~~~~~fD~i~~~~~~~~  112 (177)
T 2esr_A           91 ERAID-----CLTGRFDLVFLDPPYAK  112 (177)
T ss_dssp             HHHHH-----HBCSCEEEEEECCSSHH
T ss_pred             HHhHH-----hhcCCCCEEEECCCCCc
Confidence            65322     12356999999998753

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.53  E-value=2.4e-14  Score=101.26  Aligned_cols=120  Identities=14%  Similarity=0.229  Sum_probs=84.9

Q ss_pred             cccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCC
Q psy5757           7 GAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDG   85 (139)
Q Consensus         7 ~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~   85 (139)
                      +..+..+.....+...+.  ..++.+|||+|||+|..+..+++..+ .++++++|+++.+++.|++++.. +.     ..
T Consensus        34 ~~~~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~  105 (233)
T 2gpy_A           34 QVPIMDLLGMESLLHLLK--MAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGL-----ES  105 (233)
T ss_dssp             TCCCCCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTC-----TT
T ss_pred             CCCCcCHHHHHHHHHHHh--ccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC-----CC
Confidence            344556655555555553  45778999999999999999999973 56999999999999999999887 54     35


Q ss_pred             cEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCC
Q psy5757          86 HIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEG  137 (139)
Q Consensus        86 ~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g  137 (139)
                      +++++.+|+.+.++..   ...++||+|+++.+.+..........+.++|+|
T Consensus       106 ~v~~~~~d~~~~~~~~---~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG  154 (233)
T 2gpy_A          106 RIELLFGDALQLGEKL---ELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGG  154 (233)
T ss_dssp             TEEEECSCGGGSHHHH---TTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEE
T ss_pred             cEEEEECCHHHHHHhc---ccCCCccEEEECCCHHHHHHHHHHHHHHcCCCe
Confidence            7999999976643321   113579999998876533332233344444444

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.52  E-value=2.4e-14  Score=97.67  Aligned_cols=106  Identities=11%  Similarity=0.179  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCc--EEEE
Q psy5757          14 SAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGH--IKFV   90 (139)
Q Consensus        14 ~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~--i~~~   90 (139)
                      .....+++.+.  ..++.+|||+|||+|..+..+++..   .+++++|+++.+++.+++++.. +.      .+  ++++
T Consensus        39 ~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~------~~~~~~~~  107 (194)
T 1dus_A           39 KGTKILVENVV--VDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNL------DNYDIRVV  107 (194)
T ss_dssp             HHHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTC------TTSCEEEE
T ss_pred             hHHHHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHcCC------CccceEEE
Confidence            35566666664  4578899999999999999999883   3999999999999999999887 43      54  9999


Q ss_pred             EccchhhhHHHhhhccCCceeEEecCcccccc-cc---ceeeeeeeccCCC
Q psy5757          91 ALGMIKRIETVELMMKFDRYDFLPHAPAESWM-NI---PVCINYTATMPEG  137 (139)
Q Consensus        91 ~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~-~~---p~~~~~~~~~p~g  137 (139)
                      .+|+.+.+       +.++||+|++++++|+. .+   .....++.++|+|
T Consensus       108 ~~d~~~~~-------~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG  151 (194)
T 1dus_A          108 HSDLYENV-------KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNG  151 (194)
T ss_dssp             ECSTTTTC-------TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEE
T ss_pred             ECchhccc-------ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCC
Confidence            99965521       24579999999998873 21   2233345555655

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.52  E-value=6.5e-14  Score=94.75  Aligned_cols=91  Identities=15%  Similarity=0.156  Sum_probs=72.6

Q ss_pred             ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEE
Q psy5757          10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIK   88 (139)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~   88 (139)
                      .........+.+.+.  ..++.+|||+|||+|..+..+++   +..+++++|+++.+++.+++++.. +.      ++++
T Consensus        18 ~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~   86 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNI------KNCQ   86 (183)
T ss_dssp             CCCHHHHHHHHHHHC--CCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTC------CSEE
T ss_pred             cCHHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCC------CcEE
Confidence            344555566666664  56788999999999999999998   244999999999999999999887 43      6899


Q ss_pred             EEEccchhhhHHHhhhccCCceeEEecCcc
Q psy5757          89 FVALGMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        89 ~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      ++++|+.+.+       +.++||+|+++.+
T Consensus        87 ~~~~d~~~~~-------~~~~~D~i~~~~~  109 (183)
T 2yxd_A           87 IIKGRAEDVL-------DKLEFNKAFIGGT  109 (183)
T ss_dssp             EEESCHHHHG-------GGCCCSEEEECSC
T ss_pred             EEECCccccc-------cCCCCcEEEECCc
Confidence            9999965421       2357999999988

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.52  E-value=3e-14  Score=106.04  Aligned_cols=124  Identities=23%  Similarity=0.279  Sum_probs=85.0

Q ss_pred             hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-h----ccc
Q psy5757           6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-S----NAR   80 (139)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~----~~~   80 (139)
                      .++.+..+.....++..+.  +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.|++++.. +    +. 
T Consensus        84 ~~~~~~~~~~~~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln-  160 (336)
T 2b25_A           84 RGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLS-  160 (336)
T ss_dssp             CSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTT-
T ss_pred             CCCcccCHHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccc-
Confidence            3445555655677777774  67889999999999999999999875567999999999999999999875 2    00 


Q ss_pred             cc--cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          81 LL--TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        81 ~~--~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      .+  ...+++++++|+.+....    .+.++||+|+++...+|.  .....++.++|+|.
T Consensus       161 ~~~~~~~~v~~~~~d~~~~~~~----~~~~~fD~V~~~~~~~~~--~l~~~~~~LkpgG~  214 (336)
T 2b25_A          161 HVEEWPDNVDFIHKDISGATED----IKSLTFDAVALDMLNPHV--TLPVFYPHLKHGGV  214 (336)
T ss_dssp             CSSCCCCCEEEEESCTTCCC-----------EEEEEECSSSTTT--THHHHGGGEEEEEE
T ss_pred             cccccCCceEEEECChHHcccc----cCCCCeeEEEECCCCHHH--HHHHHHHhcCCCcE
Confidence            00  025899999997653211    123569999998764443  22333455555553

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.52  E-value=3.5e-14  Score=97.52  Aligned_cols=103  Identities=13%  Similarity=0.164  Sum_probs=77.7

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~   96 (139)
                      .+.+.+.  ..++.+|||+|||+|..+..+++...   +++++|+++.+++.+++++.. +.      ++++++.+|+.+
T Consensus        23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~   91 (199)
T 2xvm_A           23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENL------DNLHTRVVDLNN   91 (199)
T ss_dssp             HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTC------TTEEEEECCGGG
T ss_pred             HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCC------CCcEEEEcchhh
Confidence            4445553  34667999999999999999999843   999999999999999999877 43      579999999654


Q ss_pred             hhHHHhhhccCCceeEEecCccccccc--cc---eeeeeeeccCCCC
Q psy5757          97 RIETVELMMKFDRYDFLPHAPAESWMN--IP---VCINYTATMPEGS  138 (139)
Q Consensus        97 ~~~~~~~~~~~~~~D~vi~~~~~~~~~--~p---~~~~~~~~~p~g~  138 (139)
                       +     .. .++||+|+++.++|++.  ++   .....+.++|+|.
T Consensus        92 -~-----~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~  131 (199)
T 2xvm_A           92 -L-----TF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGY  131 (199)
T ss_dssp             -C-----CC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEE
T ss_pred             -C-----CC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeE
Confidence             1     11 46799999999999986  22   2222455555553

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.52  E-value=1.5e-14  Score=102.97  Aligned_cols=100  Identities=12%  Similarity=0.010  Sum_probs=75.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++.+|||||||+|..+..+++..+  .+++++|+++.+++.|+++.....      .++.++.+|+.+    +....+.
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~------~~~~~~~~~a~~----~~~~~~~  126 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWED----VAPTLPD  126 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHH----HGGGSCT
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC------CceEEEeehHHh----hcccccc
Confidence            6889999999999999999988753  389999999999999999887721      478888898544    2233456


Q ss_pred             CceeEEecCc-----cccccccce---eeeeeeccCCCCC
Q psy5757         108 DRYDFLPHAP-----AESWMNIPV---CINYTATMPEGSY  139 (139)
Q Consensus       108 ~~~D~vi~~~-----~~~~~~~p~---~~~~~~~~p~g~~  139 (139)
                      ++||.|+...     ..++..++.   ...+++++|+|.|
T Consensus       127 ~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l  166 (236)
T 3orh_A          127 GHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVL  166 (236)
T ss_dssp             TCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEE
T ss_pred             cCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEE
Confidence            6799987543     344444443   3458889999853

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.52  E-value=5.7e-14  Score=103.11  Aligned_cols=98  Identities=15%  Similarity=0.032  Sum_probs=73.2

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .++++++|||+|||+|..+..++.+. +.++|+++|+++++++.|++++.. +.      .+++++++|+.+ +      
T Consensus       119 ~l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl------~~v~~v~gDa~~-l------  184 (298)
T 3fpf_A          119 RFRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGV------DGVNVITGDETV-I------  184 (298)
T ss_dssp             TCCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTC------CSEEEEESCGGG-G------
T ss_pred             CCCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCC------CCeEEEECchhh-C------
Confidence            37899999999999998775554443 356999999999999999999987 54      789999999755 2      


Q ss_pred             ccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757         105 MKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                       +.++||+|++.....-........++.++|+|.
T Consensus       185 -~d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~  217 (298)
T 3fpf_A          185 -DGLEFDVLMVAALAEPKRRVFRNIHRYVDTETR  217 (298)
T ss_dssp             -GGCCCSEEEECTTCSCHHHHHHHHHHHCCTTCE
T ss_pred             -CCCCcCEEEECCCccCHHHHHHHHHHHcCCCcE
Confidence             246799999865421111223445777888885

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.52  E-value=4.1e-14  Score=99.67  Aligned_cols=86  Identities=20%  Similarity=0.240  Sum_probs=67.0

Q ss_pred             cCCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .++++.+|||+||| +|.++..+++..  ..+++++|+++.+++.|++++....     . +++++++|+.. +.    .
T Consensus        52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-----~-~v~~~~~d~~~-~~----~  118 (230)
T 3evz_A           52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNN-----S-NVRLVKSNGGI-IK----G  118 (230)
T ss_dssp             TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTT-----C-CCEEEECSSCS-ST----T
T ss_pred             hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhC-----C-CcEEEeCCchh-hh----h
Confidence            35788999999999 999999999985  2399999999999999999988721     2 78999999532 11    1


Q ss_pred             ccCCceeEEecCcccccccc
Q psy5757         105 MKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~~  124 (139)
                      .+.++||+|++|+++++..+
T Consensus       119 ~~~~~fD~I~~npp~~~~~~  138 (230)
T 3evz_A          119 VVEGTFDVIFSAPPYYDKPL  138 (230)
T ss_dssp             TCCSCEEEEEECCCCC----
T ss_pred             cccCceeEEEECCCCcCCcc
Confidence            22468999999999887543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.52  E-value=2.1e-14  Score=99.93  Aligned_cols=103  Identities=19%  Similarity=0.233  Sum_probs=79.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+.+.+. .+.++.+|||+|||+|..+..+++...   +++++|+++.+++.+++   .+      ..+++++++|+.
T Consensus        34 ~~~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~---~~------~~~~~~~~~d~~  100 (218)
T 3ou2_A           34 APAALERLR-AGNIRGDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGR---HG------LDNVEFRQQDLF  100 (218)
T ss_dssp             HHHHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGG---GC------CTTEEEEECCTT
T ss_pred             HHHHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHh---cC------CCCeEEEecccc
Confidence            345555554 356778999999999999999999843   99999999999999987   21      268999999965


Q ss_pred             hhhHHHhhhccCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                      +.       .+.++||+|+++.++|++.++     ....++.++|+|.
T Consensus       101 ~~-------~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~  141 (218)
T 3ou2_A          101 DW-------TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGV  141 (218)
T ss_dssp             SC-------CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             cC-------CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeE
Confidence            42       245789999999999999886     2333566666663

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.51  E-value=2e-13  Score=99.05  Aligned_cols=101  Identities=13%  Similarity=0.246  Sum_probs=77.3

Q ss_pred             cccccChHHHHHHHHHhcccC-CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccC
Q psy5757           7 GAAIGGISAILTYLSIIQPHL-NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTD   84 (139)
Q Consensus         7 ~~~~~~~~~~~~~~~~l~~~~-~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~   84 (139)
                      +..++.+. ...+.+.+...+ .++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.+++++.. +.      
T Consensus        87 ~~~ipr~~-te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~------  158 (276)
T 2b3t_A           87 ATLIPRPD-TECLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAI------  158 (276)
T ss_dssp             TSCCCCTT-HHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTC------
T ss_pred             CCcccCch-HHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------
Confidence            44455554 344444443333 567799999999999999999887 466999999999999999999987 54      


Q ss_pred             CcEEEEEccchhhhHHHhhhccCCceeEEecCcccccc
Q psy5757          85 GHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus        85 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~  122 (139)
                      .+++++++|+.+.+       +.++||+|++|+++++.
T Consensus       159 ~~v~~~~~d~~~~~-------~~~~fD~Iv~npPy~~~  189 (276)
T 2b3t_A          159 KNIHILQSDWFSAL-------AGQQFAMIVSNPPYIDE  189 (276)
T ss_dssp             CSEEEECCSTTGGG-------TTCCEEEEEECCCCBCT
T ss_pred             CceEEEEcchhhhc-------ccCCccEEEECCCCCCc
Confidence            68999999965521       24579999999987654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.51  E-value=3.5e-14  Score=100.74  Aligned_cols=115  Identities=16%  Similarity=0.178  Sum_probs=79.2

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+..+.. ..++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++.. +.     ..+++++.+|+.
T Consensus        61 ~~~l~~l~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----~~~i~~~~~d~~  134 (232)
T 3cbg_A           61 AQFLGLLIS-LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV-----AEKISLRLGPAL  134 (232)
T ss_dssp             HHHHHHHHH-HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHH
T ss_pred             HHHHHHHHH-hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHH
Confidence            334444332 34668999999999999999999885567999999999999999999887 54     357999999977


Q ss_pred             hhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEG  137 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g  137 (139)
                      +.+..+......++||+|+++..............+.++|+|
T Consensus       135 ~~l~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG  176 (232)
T 3cbg_A          135 ATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGG  176 (232)
T ss_dssp             HHHHHHHTSSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEE
T ss_pred             HHHHHHHhcCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCe
Confidence            654443221111679999988763322222222334444444

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.51  E-value=1.9e-14  Score=103.37  Aligned_cols=103  Identities=12%  Similarity=0.175  Sum_probs=79.7

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+.+.+....+++.+|||+|||+|.++..+++...   +++++|+++.+++.|+++.          .+++++++|+.
T Consensus        37 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~  103 (263)
T 3pfg_A           37 AADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRN----------PDAVLHHGDMR  103 (263)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHC----------TTSEEEECCTT
T ss_pred             HHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhC----------CCCEEEECChH
Confidence            4455566655567778999999999999999999864   8999999999999998874          46889999965


Q ss_pred             hhhHHHhhhccCCceeEEecCc-cccccccc------eeeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAP-AESWMNIP------VCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~-~~~~~~~p------~~~~~~~~~p~g~  138 (139)
                      + +.   .   .++||+|+++. ++||+.++      ....++.++|+|.
T Consensus       104 ~-~~---~---~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~  146 (263)
T 3pfg_A          104 D-FS---L---GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGV  146 (263)
T ss_dssp             T-CC---C---SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEE
T ss_pred             H-CC---c---cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcE
Confidence            4 21   1   46799999998 99998643      2334666777764

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.51  E-value=3.1e-14  Score=107.86  Aligned_cols=108  Identities=13%  Similarity=0.172  Sum_probs=77.1

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~   96 (139)
                      .+++.+.  ..++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.+++++.. +.   -...+++++.+|+.+
T Consensus       213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl---~~~~~v~~~~~D~~~  286 (375)
T 4dcm_A          213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMP---EALDRCEFMINNALS  286 (375)
T ss_dssp             HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCG---GGGGGEEEEECSTTT
T ss_pred             HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCC---CcCceEEEEechhhc
Confidence            4455553  2455899999999999999999997 456999999999999999999987 43   011368889999765


Q ss_pred             hhHHHhhhccCCceeEEecCcccccccc---c-----eeeeeeeccCCCC
Q psy5757          97 RIETVELMMKFDRYDFLPHAPAESWMNI---P-----VCINYTATMPEGS  138 (139)
Q Consensus        97 ~~~~~~~~~~~~~~D~vi~~~~~~~~~~---p-----~~~~~~~~~p~g~  138 (139)
                      .+       +.++||+|++|+++|+...   .     ....++.++|+|.
T Consensus       287 ~~-------~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~  329 (375)
T 4dcm_A          287 GV-------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGE  329 (375)
T ss_dssp             TC-------CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEE
T ss_pred             cC-------CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcE
Confidence            22       3468999999999996322   1     2233556666664

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.50  E-value=2e-13  Score=99.85  Aligned_cols=100  Identities=20%  Similarity=0.242  Sum_probs=79.5

Q ss_pred             hhcccc-cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757           5 KIGAAI-GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL   82 (139)
Q Consensus         5 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~   82 (139)
                      .+|+.+ ..+.+...+++.+.  ..++.+|||+|||+|.++..+++...   +++++|+|+.+++.+++++.. +.    
T Consensus         5 ~~gq~fl~d~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~----   75 (285)
T 1zq9_A            5 GIGQHILKNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPV----   75 (285)
T ss_dssp             ---CCEECCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTT----
T ss_pred             CCCcCccCCHHHHHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCC----
Confidence            467755 47777888888875  57888999999999999999999864   999999999999999998865 32    


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccc
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~  122 (139)
                       .++++++++|+.+ +       +..+||+|++|.+++|.
T Consensus        76 -~~~v~~~~~D~~~-~-------~~~~fD~vv~nlpy~~~  106 (285)
T 1zq9_A           76 -ASKLQVLVGDVLK-T-------DLPFFDTCVANLPYQIS  106 (285)
T ss_dssp             -GGGEEEEESCTTT-S-------CCCCCSEEEEECCGGGH
T ss_pred             -CCceEEEEcceec-c-------cchhhcEEEEecCcccc
Confidence             2589999999654 1       23369999999987764

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.50  E-value=1.7e-14  Score=103.74  Aligned_cols=106  Identities=21%  Similarity=0.289  Sum_probs=81.5

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+++.+...+.++.+|||+|||+|.++..+++...   +++++|+++.+++.+++++.. +.      . +++..+|+
T Consensus       107 t~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~------~-v~~~~~d~  176 (254)
T 2nxc_A          107 TRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGV------R-PRFLEGSL  176 (254)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTC------C-CEEEESCH
T ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCC------c-EEEEECCh
Confidence            4455666655567889999999999999999988653   999999999999999999887 43      3 88999986


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      .+.+       +.++||+|++|...|++........+.++|+|.
T Consensus       177 ~~~~-------~~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~  213 (254)
T 2nxc_A          177 EAAL-------PFGPFDLLVANLYAELHAALAPRYREALVPGGR  213 (254)
T ss_dssp             HHHG-------GGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEE
T ss_pred             hhcC-------cCCCCCEEEECCcHHHHHHHHHHHHHHcCCCCE
Confidence            5421       235799999998877765555555566666663

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.50  E-value=5.2e-14  Score=99.78  Aligned_cols=99  Identities=12%  Similarity=-0.016  Sum_probs=72.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..++.+|||+|||+|..+..+++...  .+++++|+|+.+++.|+++....      ..+++++++|+.+    +..+.+
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~------~~~v~~~~~d~~~----~~~~~~  125 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQ------THKVIPLKGLWED----VAPTLP  125 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGC------SSEEEEEESCHHH----HGGGSC
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhc------CCCeEEEecCHHH----hhcccC
Confidence            36778999999999999999976542  28999999999999999987661      1579999999554    211334


Q ss_pred             CCceeEEec-Cccccccccc--------eeeeeeeccCCCC
Q psy5757         107 FDRYDFLPH-APAESWMNIP--------VCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~-~~~~~~~~~p--------~~~~~~~~~p~g~  138 (139)
                      .++||+|++ ...+ ...++        ....++.++|+|.
T Consensus       126 ~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~  165 (236)
T 1zx0_A          126 DGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGV  165 (236)
T ss_dssp             TTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEE
T ss_pred             CCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeE
Confidence            578999999 4432 22222        4455778888874

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.49  E-value=8.5e-14  Score=98.75  Aligned_cols=94  Identities=14%  Similarity=0.156  Sum_probs=74.4

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .++++.+|||+|||+|.++..+++...   +++++|+|+.+++.++++             ++++.+|+.+..    .+.
T Consensus        38 ~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~-------------~~~~~~d~~~~~----~~~   97 (240)
T 3dli_A           38 YFKGCRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK-------------FNVVKSDAIEYL----KSL   97 (240)
T ss_dssp             GTTTCSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT-------------SEEECSCHHHHH----HTS
T ss_pred             hhcCCCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh-------------cceeeccHHHHh----hhc
Confidence            457789999999999999999999853   899999999999887653             567788855422    133


Q ss_pred             cCCceeEEecCccccccccc-----eeeeeeeccCCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGSY  139 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~~  139 (139)
                      +.++||+|+++.++||+.++     ....++.++|+|.+
T Consensus        98 ~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l  136 (240)
T 3dli_A           98 PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYI  136 (240)
T ss_dssp             CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCE
T ss_pred             CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEE
Confidence            45789999999999999866     34447889999863

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.49  E-value=4.6e-14  Score=101.38  Aligned_cols=98  Identities=9%  Similarity=-0.000  Sum_probs=72.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh-c
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM-M  105 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~  105 (139)
                      .++.+|||+|||+|..+..++... +.++|+++|+++.+++.|+++... ++      .+++++++|+.+    +... .
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l------~~v~~~~~d~~~----~~~~~~  147 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGL------KGARALWGRAEV----LAREAG  147 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEECCHHH----HTTSTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC------CceEEEECcHHH----hhcccc
Confidence            467899999999999999999987 467999999999999999999988 54      679999999554    2111 1


Q ss_pred             cCCceeEEecCccccccccceeeeeeeccCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPVCINYTATMPEG  137 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g  137 (139)
                      ..++||+|+++..-.+ ........+.++|+|
T Consensus       148 ~~~~fD~I~s~a~~~~-~~ll~~~~~~LkpgG  178 (249)
T 3g89_A          148 HREAYARAVARAVAPL-CVLSELLLPFLEVGG  178 (249)
T ss_dssp             TTTCEEEEEEESSCCH-HHHHHHHGGGEEEEE
T ss_pred             cCCCceEEEECCcCCH-HHHHHHHHHHcCCCe
Confidence            1367999999865322 222233344455554

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.49  E-value=1.1e-13  Score=101.80  Aligned_cols=100  Identities=19%  Similarity=0.249  Sum_probs=75.5

Q ss_pred             hhcccc-cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757           5 KIGAAI-GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL   82 (139)
Q Consensus         5 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~   82 (139)
                      .+|+.+ ..+.+...+++.+.  ..++.+|||+|||+|.++..+++...   +++++|+++.+++.+++++.. +.    
T Consensus        19 ~~Gq~fl~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~----   89 (299)
T 2h1r_A           19 FQGQHLLKNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGY----   89 (299)
T ss_dssp             ----CEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTC----
T ss_pred             ccccceecCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCC----
Confidence            467755 47777888888875  57788999999999999999998753   999999999999999999876 33    


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                        ++++++.+|+.+ +       +..+||+|++|++++|..
T Consensus        90 --~~v~~~~~D~~~-~-------~~~~~D~Vv~n~py~~~~  120 (299)
T 2h1r_A           90 --NNLEVYEGDAIK-T-------VFPKFDVCTANIPYKISS  120 (299)
T ss_dssp             --CCEEC----CCS-S-------CCCCCSEEEEECCGGGHH
T ss_pred             --CceEEEECchhh-C-------CcccCCEEEEcCCccccc
Confidence              689999999654 1       234799999999987654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.49  E-value=2.7e-14  Score=99.06  Aligned_cols=91  Identities=12%  Similarity=0.213  Sum_probs=72.8

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      .+...+..++.++.+|||+|||+|.++..+++....  +++++|+++.+++.++++...       ..+++++++|+.+ 
T Consensus        31 ~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~-------~~~i~~~~~d~~~-  100 (215)
T 2pxx_A           31 SFRALLEPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDVRK-  100 (215)
T ss_dssp             HHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTT-------CTTCEEEECCTTS-
T ss_pred             HHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhccc-------CCCcEEEEcchhc-
Confidence            455666656688899999999999999999998632  899999999999999988754       3678999999654 


Q ss_pred             hHHHhhhccCCceeEEecCccccccc
Q psy5757          98 IETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                      +     ..+.++||+|+++.+++++.
T Consensus       101 ~-----~~~~~~fD~v~~~~~~~~~~  121 (215)
T 2pxx_A          101 L-----DFPSASFDVVLEKGTLDALL  121 (215)
T ss_dssp             C-----CSCSSCEEEEEEESHHHHHT
T ss_pred             C-----CCCCCcccEEEECcchhhhc
Confidence            1     22346799999998887654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.49  E-value=8.3e-14  Score=102.66  Aligned_cols=96  Identities=16%  Similarity=0.134  Sum_probs=78.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.+|||+|||+|..+..+++..+.  +++++|+++.+++.++++... +.     ..+++++.+|+.+    +    
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~----~----  152 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVLASIDT-----NRSRQVLLQGWED----F----  152 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCGGG----C----
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChHH----C----
Confidence            467889999999999999999998633  999999999999999999887 44     3579999999543    1    


Q ss_pred             cCCceeEEecCccccccc--cce---eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMN--IPV---CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~--~p~---~~~~~~~~p~g~  138 (139)
                       .++||+|++..++|++.  ++.   ....+.++|+|.
T Consensus       153 -~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  189 (318)
T 2fk8_A          153 -AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGR  189 (318)
T ss_dssp             -CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCE
T ss_pred             -CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcE
Confidence             16799999999999994  332   334778888885

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.49  E-value=5.3e-14  Score=100.21  Aligned_cols=113  Identities=17%  Similarity=0.134  Sum_probs=76.5

Q ss_pred             HHHHHHHhcc-cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQP-HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~-~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~   94 (139)
                      ...++..+.. .++++.+|||+|||+|.++..+++..++.++|+++|+++.+++.+.+..+.       ..|+.++++|+
T Consensus        62 a~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-------r~nv~~i~~Da  134 (232)
T 3id6_C           62 AGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-------RPNIFPLLADA  134 (232)
T ss_dssp             HHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-------CTTEEEEECCT
T ss_pred             HHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCeEEEEccc
Confidence            3444444431 257899999999999999999999987788999999999987666554433       26899999997


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccceeee-eeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCIN-YTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~-~~~~~p~g~  138 (139)
                      .+... .  ....++||+|+++.+..+........ .+.++|+|.
T Consensus       135 ~~~~~-~--~~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~  176 (232)
T 3id6_C          135 RFPQS-Y--KSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGD  176 (232)
T ss_dssp             TCGGG-T--TTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEE
T ss_pred             ccchh-h--hccccceEEEEecCCChhHHHHHHHHHHHhCCCCeE
Confidence            65211 1  11135799999997753222111112 225666664

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.49  E-value=2.8e-14  Score=100.22  Aligned_cols=103  Identities=17%  Similarity=0.200  Sum_probs=78.7

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .++++.+|||+|||+|..+..+++...   +++++|+++.+++.++++... +.. .....+++++.+|+.+ +     .
T Consensus        27 ~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~d~~~-~-----~   96 (235)
T 3sm3_A           27 YLQEDDEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLN-QKTGGKAEFKVENASS-L-----S   96 (235)
T ss_dssp             HCCTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCC-SSSSCEEEEEECCTTS-C-----C
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCc-cccCcceEEEEecccc-c-----C
Confidence            457889999999999999999999843   999999999999999998876 320 0011368999999654 1     2


Q ss_pred             ccCCceeEEecCccccccccce------eeeeeeccCCCC
Q psy5757         105 MKFDRYDFLPHAPAESWMNIPV------CINYTATMPEGS  138 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~~p~------~~~~~~~~p~g~  138 (139)
                      .+.++||+|+++.++|++.++.      ...++.++|+|.
T Consensus        97 ~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~  136 (235)
T 3sm3_A           97 FHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAY  136 (235)
T ss_dssp             SCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEE
T ss_pred             CCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeE
Confidence            2356899999999999998764      223566677764

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.49  E-value=2.8e-14  Score=99.70  Aligned_cols=101  Identities=17%  Similarity=0.103  Sum_probs=80.1

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~   96 (139)
                      ..++..+.  ..++.+|||+|||+|..+..+++...   +++++|+++.+++.++++..         .+++++.+|+.+
T Consensus        35 ~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~---------~~~~~~~~d~~~  100 (220)
T 3hnr_A           35 EDILEDVV--NKSFGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLP---------KEFSITEGDFLS  100 (220)
T ss_dssp             HHHHHHHH--HTCCSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSC---------TTCCEESCCSSS
T ss_pred             HHHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCC---------CceEEEeCChhh
Confidence            34555554  35788999999999999999999843   99999999999999988752         367889999655


Q ss_pred             hhHHHhhhccCCceeEEecCcccccccccee-----eeeeeccCCCC
Q psy5757          97 RIETVELMMKFDRYDFLPHAPAESWMNIPVC-----INYTATMPEGS  138 (139)
Q Consensus        97 ~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~-----~~~~~~~p~g~  138 (139)
                       +     ..+ ++||+|+++.++|++.++..     ...+.++|+|.
T Consensus       101 -~-----~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  140 (220)
T 3hnr_A          101 -F-----EVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGK  140 (220)
T ss_dssp             -C-----CCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCE
T ss_pred             -c-----CCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCE
Confidence             2     122 68999999999999998753     44788889885

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.49  E-value=1.3e-13  Score=109.42  Aligned_cols=88  Identities=13%  Similarity=0.136  Sum_probs=73.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +..+.+|||+|||.|.++..|++.+.   +|+|+|.++.+++.|+..+.. +.      -++++.++++.+    +....
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~ga---~V~giD~~~~~i~~a~~~a~~~~~------~~~~~~~~~~~~----~~~~~  130 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASKGA---TIVGIDFQQENINVCRALAEENPD------FAAEFRVGRIEE----VIAAL  130 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHTSTT------SEEEEEECCHHH----HHHHC
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhCCC---EEEEECCCHHHHHHHHHHHHhcCC------CceEEEECCHHH----Hhhhc
Confidence            45567999999999999999999875   999999999999999998876 43      479999999544    32233


Q ss_pred             cCCceeEEecCcccccccccee
Q psy5757         106 KFDRYDFLPHAPAESWMNIPVC  127 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~~  127 (139)
                      ..++||+|++..++||+++|..
T Consensus       131 ~~~~fD~v~~~e~~ehv~~~~~  152 (569)
T 4azs_A          131 EEGEFDLAIGLSVFHHIVHLHG  152 (569)
T ss_dssp             CTTSCSEEEEESCHHHHHHHHC
T ss_pred             cCCCccEEEECcchhcCCCHHH
Confidence            4568999999999999998753

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.48  E-value=1.5e-14  Score=102.34  Aligned_cols=95  Identities=13%  Similarity=0.132  Sum_probs=73.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ++.+|||+|||+|..+..+++..   .+++++|+++.+++.|+++... +.     ..+++++++|+.+ +.      +.
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~------~~  130 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGSSPK-----AEYFSFVKEDVFT-WR------PT  130 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTTSGG-----GGGEEEECCCTTT-CC------CS
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhccCC-----CcceEEEECchhc-CC------CC
Confidence            44599999999999999997743   4899999999999999999876 33     3679999999655 11      34


Q ss_pred             CceeEEecCccccccc--cce---eeeeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMN--IPV---CINYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~--~p~---~~~~~~~~p~g~  138 (139)
                      ++||+|+++.++|+++  ++.   ...++.++|+|.
T Consensus       131 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  166 (235)
T 3lcc_A          131 ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGE  166 (235)
T ss_dssp             SCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEE
T ss_pred             CCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcE
Confidence            5899999999999987  332   333556666663

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.48  E-value=2.9e-13  Score=98.49  Aligned_cols=102  Identities=15%  Similarity=0.148  Sum_probs=77.5

Q ss_pred             CCCeEEEEcccC---ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHH-----
Q psy5757          29 ENSKVLEIGSGS---GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIET-----  100 (139)
Q Consensus        29 ~~~~iLdiG~G~---G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-----  100 (139)
                      ...+|||+|||+   |.++..+.+.. +.++|+++|+|+.+++.|++++..       ..+++++.+|+.+.-..     
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~~-------~~~v~~~~~D~~~~~~~~~~~~  148 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLAK-------DPNTAVFTADVRDPEYILNHPD  148 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHTT-------CTTEEEEECCTTCHHHHHHSHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcCC-------CCCeEEEEeeCCCchhhhccch
Confidence            447999999999   98877666655 567999999999999999998754       36799999998752110     


Q ss_pred             HhhhccCCceeEEecCcccccccc--c---eeeeeeeccCCCC
Q psy5757         101 VELMMKFDRYDFLPHAPAESWMNI--P---VCINYTATMPEGS  138 (139)
Q Consensus       101 ~~~~~~~~~~D~vi~~~~~~~~~~--p---~~~~~~~~~p~g~  138 (139)
                      +....+++++|+|+++.++||+.+  +   ....++.++|+|.
T Consensus       149 ~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~  191 (274)
T 2qe6_A          149 VRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSY  191 (274)
T ss_dssp             HHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCE
T ss_pred             hhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcE
Confidence            001233458999999999999987  3   3344777888875

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.48  E-value=4.9e-14  Score=100.03  Aligned_cols=96  Identities=14%  Similarity=0.102  Sum_probs=75.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ++.+|||+|||+|..+..+++...  .+++++|+++.+++.|++++.. +.      .+++++.+|+.+ +     ..+.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~-~-----~~~~  144 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCCGLQD-F-----TPEP  144 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGG------GEEEEEECCGGG-C-----CCCS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCC------ceEEEEEcChhh-c-----CCCC
Confidence            578999999999999999988763  3999999999999999998876 22      578999999544 1     1234


Q ss_pred             CceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      ++||+|+++.++|++.++.     ...++.++|+|.
T Consensus       145 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  180 (241)
T 2ex4_A          145 DSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGI  180 (241)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             CCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeE
Confidence            5799999999999998753     233566677664

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.48  E-value=3.3e-14  Score=103.86  Aligned_cols=106  Identities=13%  Similarity=0.096  Sum_probs=70.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc---CCCceE--EEEeCCHHHHHHHHHHHHh-hccccccCCcEEE--EEccchhhhH
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM---NSTGQV--IGIEHVPQLVNSSIQNILH-SNARLLTDGHIKF--VALGMIKRIE   99 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~---~~~~~v--~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~--~~~d~~~~~~   99 (139)
                      .++.+|||+|||+|..+..++...   .+..++  +++|+|++|++.|++++.. ..     ..++.+  ..++..+...
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~-----~~~v~~~~~~~~~~~~~~  125 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN-----LENVKFAWHKETSSEYQS  125 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS-----CTTEEEEEECSCHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC-----CCcceEEEEecchhhhhh
Confidence            356799999999998776544322   134444  9999999999999998765 11     144544  4555332111


Q ss_pred             HHhhhccCCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757         100 TVELMMKFDRYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus       100 ~~~~~~~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      ......+.++||+|+++.++||+++|.   ...++.++|+|.
T Consensus       126 ~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~  167 (292)
T 2aot_A          126 RMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAK  167 (292)
T ss_dssp             HHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEE
T ss_pred             hhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcE
Confidence            110112356899999999999999874   344778888874

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.48  E-value=6.1e-14  Score=97.71  Aligned_cols=99  Identities=10%  Similarity=-0.027  Sum_probs=72.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++..++.++++++|+++.+++.|++++.. +.     ..+++++++|+.+.++    . .
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~----~-~  124 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL-----IDRVELQVGDPLGIAA----G-Q  124 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG-----GGGEEEEESCHHHHHT----T-C
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----CceEEEEEecHHHHhc----c-C
Confidence            4668999999999999999999875467999999999999999999887 54     3579999999655322    1 1


Q ss_pred             CCceeEEecCccccccccceeeeeeeccCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVCINYTATMPEG  137 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g  137 (139)
                      .+ ||+|+++.............++.++|+|
T Consensus       125 ~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG  154 (210)
T 3c3p_A          125 RD-IDILFMDCDVFNGADVLERMNRCLAKNA  154 (210)
T ss_dssp             CS-EEEEEEETTTSCHHHHHHHHGGGEEEEE
T ss_pred             CC-CCEEEEcCChhhhHHHHHHHHHhcCCCe
Confidence            35 9999987653322222333344455554

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.48  E-value=5.3e-14  Score=97.49  Aligned_cols=109  Identities=16%  Similarity=0.056  Sum_probs=77.4

Q ss_pred             HHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccc
Q psy5757          15 AILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGM   94 (139)
Q Consensus        15 ~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+.++.+. ...++.+|||+|||+|..+..++...  ..+++++|+|+.+++.+++++....      .+++++++|+
T Consensus        10 ~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~   80 (209)
T 2p8j_A           10 QLYRFLKYCN-ESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENN------FKLNISKGDI   80 (209)
T ss_dssp             HHHHHHHHHH-HSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHT------CCCCEEECCT
T ss_pred             hHHHHHHHHh-ccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcC------CceEEEECch
Confidence            3455566554 35678899999999999865554443  2399999999999999999887621      4688899996


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccc--cce---eeeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMN--IPV---CINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~--~p~---~~~~~~~~p~g~  138 (139)
                      .+ +     +.+.++||+|+++.++|++.  ++.   ...++.++|+|.
T Consensus        81 ~~-~-----~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  123 (209)
T 2p8j_A           81 RK-L-----PFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGL  123 (209)
T ss_dssp             TS-C-----CSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             hh-C-----CCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcE
Confidence            54 1     22356899999999988883  332   223556666653

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.48  E-value=1.4e-13  Score=98.29  Aligned_cols=91  Identities=15%  Similarity=0.244  Sum_probs=72.8

Q ss_pred             HHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEcc
Q psy5757          15 AILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALG   93 (139)
Q Consensus        15 ~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d   93 (139)
                      ....+...+.  +.++.+|||+|||+|.++..+++...+.++++++|+++.+++.|++++.. +.     ..+++++++|
T Consensus        81 ~~~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----~~~v~~~~~d  153 (255)
T 3mb5_A           81 DAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-----DDRVTIKLKD  153 (255)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC-----TTTEEEECSC
T ss_pred             HHHHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC-----CCceEEEECc
Confidence            3445555553  57889999999999999999999965667999999999999999999987 54     2449999999


Q ss_pred             chhhhHHHhhhccCCceeEEecCccc
Q psy5757          94 MIKRIETVELMMKFDRYDFLPHAPAE  119 (139)
Q Consensus        94 ~~~~~~~~~~~~~~~~~D~vi~~~~~  119 (139)
                      +.+.       .+.++||+|+++++-
T Consensus       154 ~~~~-------~~~~~~D~v~~~~~~  172 (255)
T 3mb5_A          154 IYEG-------IEEENVDHVILDLPQ  172 (255)
T ss_dssp             GGGC-------CCCCSEEEEEECSSC
T ss_pred             hhhc-------cCCCCcCEEEECCCC
Confidence            6642       234679999998763

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.48  E-value=4.9e-14  Score=103.79  Aligned_cols=121  Identities=13%  Similarity=0.051  Sum_probs=79.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccc-ccCCcEEEEEcc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARL-LTDGHIKFVALG   93 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~-~~~~~i~~~~~d   93 (139)
                      +..+++.+.....++.+|||+|||+|..+..+++..  ..+++++|+++.+++.++++... +.+.. ....+++++++|
T Consensus        21 ~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D   98 (313)
T 3bgv_A           21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGR--INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITAD   98 (313)
T ss_dssp             HHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECC
T ss_pred             HHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEec
Confidence            444555554334577899999999999999999853  44999999999999999998765 20000 012478999999


Q ss_pred             chhhhHHHhhhccCCceeEEecCcccccc-ccc------eeeeeeeccCCCC
Q psy5757          94 MIKRIETVELMMKFDRYDFLPHAPAESWM-NIP------VCINYTATMPEGS  138 (139)
Q Consensus        94 ~~~~~~~~~~~~~~~~~D~vi~~~~~~~~-~~p------~~~~~~~~~p~g~  138 (139)
                      +.+....-....+.++||+|+++.++||+ .++      .....+.++|+|.
T Consensus        99 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~  150 (313)
T 3bgv_A           99 SSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGY  150 (313)
T ss_dssp             TTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEE
T ss_pred             ccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcE
Confidence            65411000011123489999999999998 332      2333666777764

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.48  E-value=6.9e-14  Score=99.56  Aligned_cols=96  Identities=17%  Similarity=0.191  Sum_probs=75.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++.+|||+|||+|..+..+++...  .+++++|+++.+++.++++...       ..+++++++|+.+ +     ..+.
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~-~-----~~~~  156 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAG-------MPVGKFILASMET-A-----TLPP  156 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCGGG-C-----CCCS
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhcc-------CCceEEEEccHHH-C-----CCCC
Confidence            5678999999999999999998863  2799999999999999998755       2578999999654 1     2235


Q ss_pred             CceeEEecCcccccccc--c---eeeeeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNI--P---VCINYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~--p---~~~~~~~~~p~g~  138 (139)
                      ++||+|++..++|++.+  +   ....++.++|+|.
T Consensus       157 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  192 (254)
T 1xtp_A          157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGY  192 (254)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             CCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeE
Confidence            68999999999999853  2   2333566666663

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.47  E-value=7.1e-14  Score=98.81  Aligned_cols=95  Identities=15%  Similarity=0.229  Sum_probs=74.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++.+|||+|||+|..+..+++...  .+++++|+++.+++.++++...        .+++++++|+.+ +     ..+.
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~-~-----~~~~  105 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPD--------TGITYERADLDK-L-----HLPQ  105 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCS--------SSEEEEECCGGG-C-----CCCT
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhccc--------CCceEEEcChhh-c-----cCCC
Confidence            5778999999999999999998742  2899999999999999887644        578999999654 1     1235


Q ss_pred             CceeEEecCccccccccceee---eeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      ++||+|+++.++|++.++...   .++.++|+|.
T Consensus       106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~  139 (243)
T 3bkw_A          106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGH  139 (243)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             CCceEEEEeccccccchHHHHHHHHHHhcCcCcE
Confidence            689999999999999776422   2556666653

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.47  E-value=4.8e-14  Score=102.18  Aligned_cols=99  Identities=19%  Similarity=0.327  Sum_probs=76.8

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      .+++.+.  ..++.+|||+|||+|..+..+++.   ..+++++|+++.+++.++++.          ++++++++|+.+ 
T Consensus        48 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~-  111 (279)
T 3ccf_A           48 DLLQLLN--PQPGEFILDLGCGTGQLTEKIAQS---GAEVLGTDNAATMIEKARQNY----------PHLHFDVADARN-  111 (279)
T ss_dssp             HHHHHHC--CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC----------TTSCEEECCTTT-
T ss_pred             HHHHHhC--CCCCCEEEEecCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHhhC----------CCCEEEECChhh-
Confidence            4455553  467789999999999999999983   349999999999999998764          467788898654 


Q ss_pred             hHHHhhhccCCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757          98 IETVELMMKFDRYDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                      ++      ..++||+|+++.++||+.++..   ..++.++|+|.
T Consensus       112 ~~------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~  149 (279)
T 3ccf_A          112 FR------VDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGR  149 (279)
T ss_dssp             CC------CSSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             CC------cCCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcE
Confidence            22      1367999999999999988743   23666777764

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.47  E-value=6.6e-14  Score=101.87  Aligned_cols=103  Identities=12%  Similarity=0.084  Sum_probs=77.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++...   +++|+|+|+.+++.|+++... ...  ....++.+..+|+.+....+   .+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~---~~  127 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKE--PAFDKWVIEEANWLTLDKDV---PA  127 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTS--HHHHTCEEEECCGGGHHHHS---CC
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccc--cccceeeEeecChhhCcccc---cc
Confidence            5678999999999999999999853   999999999999999887643 110  01257888899865421111   24


Q ss_pred             CCceeEEecC-cccccccc-------c---eeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHA-PAESWMNI-------P---VCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~-~~~~~~~~-------p---~~~~~~~~~p~g~  138 (139)
                      .++||+|+++ .++|++.+       +   ....++.++|+|.
T Consensus       128 ~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  170 (293)
T 3thr_A          128 GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGL  170 (293)
T ss_dssp             TTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEE
T ss_pred             CCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeE
Confidence            5689999998 89999988       3   2344777788774

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.47  E-value=1.9e-13  Score=105.08  Aligned_cols=115  Identities=10%  Similarity=-0.006  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHH-------HHHHHh-hccccccC
Q psy5757          13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSS-------IQNILH-SNARLLTD   84 (139)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a-------~~~~~~-~~~~~~~~   84 (139)
                      +..+..+++.+.  +.++.+|||+|||+|.++..+++..+ ..+++|+|+++.+++.|       ++++.. ++    ..
T Consensus       228 p~~v~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl----~~  300 (433)
T 1u2z_A          228 PNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGM----RL  300 (433)
T ss_dssp             HHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB----CC
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCC----CC
Confidence            666778887774  67889999999999999999999874 34899999999999998       777766 42    12


Q ss_pred             CcEEEEEccch-hhhHHHhhhccCCceeEEecCccccccccc---eeeeeeeccCCCC
Q psy5757          85 GHIKFVALGMI-KRIETVELMMKFDRYDFLPHAPAESWMNIP---VCINYTATMPEGS  138 (139)
Q Consensus        85 ~~i~~~~~d~~-~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p---~~~~~~~~~p~g~  138 (139)
                      .+++++++|.. +.+. +..  ...+||+|+++..++ ..++   ....++.++|+|.
T Consensus       301 ~nV~~i~gD~~~~~~~-~~~--~~~~FDvIvvn~~l~-~~d~~~~L~el~r~LKpGG~  354 (433)
T 1u2z_A          301 NNVEFSLKKSFVDNNR-VAE--LIPQCDVILVNNFLF-DEDLNKKVEKILQTAKVGCK  354 (433)
T ss_dssp             CCEEEEESSCSTTCHH-HHH--HGGGCSEEEECCTTC-CHHHHHHHHHHHTTCCTTCE
T ss_pred             CceEEEEcCccccccc-ccc--ccCCCCEEEEeCccc-cccHHHHHHHHHHhCCCCeE
Confidence            68999987543 2111 101  135699999986653 2332   2455777888875

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.47  E-value=7e-14  Score=99.48  Aligned_cols=99  Identities=10%  Similarity=0.095  Sum_probs=72.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh-c
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM-M  105 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~  105 (139)
                      .++.+|||+|||+|..+..++... +..+++++|+++.+++.|+++... ++      .+++++++|+.+    +... .
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~----~~~~~~  137 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAET----FGQRKD  137 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHH----HTTCTT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEeccHHH----hccccc
Confidence            467899999999999999999865 456999999999999999999887 54      679999999544    2111 1


Q ss_pred             cCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      ..++||+|++... ..........++.++|+|.
T Consensus       138 ~~~~fD~V~~~~~-~~~~~~l~~~~~~LkpgG~  169 (240)
T 1xdz_A          138 VRESYDIVTARAV-ARLSVLSELCLPLVKKNGL  169 (240)
T ss_dssp             TTTCEEEEEEECC-SCHHHHHHHHGGGEEEEEE
T ss_pred             ccCCccEEEEecc-CCHHHHHHHHHHhcCCCCE
Confidence            1357999999774 2122222333455666653

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.47  E-value=1.3e-13  Score=105.26  Aligned_cols=118  Identities=8%  Similarity=0.067  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-h-cccc--ccCCcEE
Q psy5757          13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-S-NARL--LTDGHIK   88 (139)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~-~~~~--~~~~~i~   88 (139)
                      +..+..+++.+.  +.++.+|||+|||+|..+..++...+. .+++|+|+++.+++.|+++... . ....  +...+++
T Consensus       159 ~~~i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~-~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVe  235 (438)
T 3uwp_A          159 FDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNC-KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT  235 (438)
T ss_dssp             HHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEE
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeE
Confidence            334666777664  688999999999999999999987643 3699999999999999876532 0 0000  1126899


Q ss_pred             EEEccchhhhHHHhhhccCCceeEEecCccccccccc---eeeeeeeccCCCC
Q psy5757          89 FVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIP---VCINYTATMPEGS  138 (139)
Q Consensus        89 ~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p---~~~~~~~~~p~g~  138 (139)
                      ++++|+.+ ++   .....+.+|+|++|+.+++ +++   +...++.++|+|.
T Consensus       236 fi~GD~~~-lp---~~d~~~~aDVVf~Nn~~F~-pdl~~aL~Ei~RvLKPGGr  283 (438)
T 3uwp_A          236 LERGDFLS-EE---WRERIANTSVIFVNNFAFG-PEVDHQLKERFANMKEGGR  283 (438)
T ss_dssp             EEECCTTS-HH---HHHHHHTCSEEEECCTTCC-HHHHHHHHHHHTTSCTTCE
T ss_pred             EEECcccC-Cc---cccccCCccEEEEcccccC-chHHHHHHHHHHcCCCCcE
Confidence            99999766 22   1111246999999988654 222   3334788899885

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.47  E-value=2.5e-13  Score=101.84  Aligned_cols=109  Identities=15%  Similarity=0.119  Sum_probs=80.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...++....  .+++.++||+|||+|.++..++....+..+++|+|+++.+++.|++++.. +.      ++++++++|+
T Consensus       192 a~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~------~~i~~~~~D~  263 (354)
T 3tma_A          192 AQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL------SWIRFLRADA  263 (354)
T ss_dssp             HHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC------TTCEEEECCG
T ss_pred             HHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC------CceEEEeCCh
Confidence            334444443  56788999999999999999999874456999999999999999999988 55      4899999997


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccc-----------eeeeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIP-----------VCINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p-----------~~~~~~~~~p~g~  138 (139)
                      .+ +.     .+.+.||+|++|+++++....           .....+.++|+|.
T Consensus       264 ~~-~~-----~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~  312 (354)
T 3tma_A          264 RH-LP-----RFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGR  312 (354)
T ss_dssp             GG-GG-----GTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCE
T ss_pred             hh-Cc-----cccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcE
Confidence            65 22     124568999999998764431           1223556667774

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.47  E-value=3.3e-13  Score=97.35  Aligned_cols=99  Identities=15%  Similarity=0.156  Sum_probs=76.7

Q ss_pred             hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757           5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT   83 (139)
Q Consensus         5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~   83 (139)
                      .+|+ ++..+.++.++++.+.  ..++.+|||+|||+|.++..+++...   +|+++|+|+.+++.+++++..       
T Consensus         6 ~~GQnFL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~~~~-------   73 (255)
T 3tqs_A            6 RFGQHFLHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKKYNQ-------   73 (255)
T ss_dssp             ---CCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHHHTT-------
T ss_pred             cCCcccccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHhh-------
Confidence            4677 4567778888998886  57888999999999999999999864   999999999999999998765       


Q ss_pred             CCcEEEEEccchhh-hHHHhhhccCCceeEEecCccc
Q psy5757          84 DGHIKFVALGMIKR-IETVELMMKFDRYDFLPHAPAE  119 (139)
Q Consensus        84 ~~~i~~~~~d~~~~-~~~~~~~~~~~~~D~vi~~~~~  119 (139)
                      .++++++++|+.+. ++.+   ...+.+| |++|+++
T Consensus        74 ~~~v~~i~~D~~~~~~~~~---~~~~~~~-vv~NlPY  106 (255)
T 3tqs_A           74 QKNITIYQNDALQFDFSSV---KTDKPLR-VVGNLPY  106 (255)
T ss_dssp             CTTEEEEESCTTTCCGGGS---CCSSCEE-EEEECCH
T ss_pred             CCCcEEEEcchHhCCHHHh---ccCCCeE-EEecCCc
Confidence            36899999997762 1211   1124688 8888873

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.47  E-value=7.1e-14  Score=96.55  Aligned_cols=97  Identities=10%  Similarity=-0.050  Sum_probs=74.2

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      ++.+..+|||+|||+|.++..++... |.++++++|+|+.+++.+++++.. +.     ..++.+  .|...       .
T Consensus        46 ~l~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g~-----~~~v~~--~d~~~-------~  110 (200)
T 3fzg_A           46 NIKHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLKT-----TIKYRF--LNKES-------D  110 (200)
T ss_dssp             HSCCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSCC-----SSEEEE--ECCHH-------H
T ss_pred             hcCCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCC-----CccEEE--ecccc-------c
Confidence            45778899999999999999999987 567999999999999999999988 54     125655  55332       1


Q ss_pred             ccCCceeEEecCccccccccceeee---eeeccCCC
Q psy5757         105 MKFDRYDFLPHAPAESWMNIPVCIN---YTATMPEG  137 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g  137 (139)
                      .+.++||+|++...+|.+.+..+..   +..++|+|
T Consensus       111 ~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pgg  146 (200)
T 3fzg_A          111 VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQN  146 (200)
T ss_dssp             HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEE
T ss_pred             CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCC
Confidence            2457799999999999996543322   45555554

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.47  E-value=8e-14  Score=98.50  Aligned_cols=107  Identities=7%  Similarity=0.088  Sum_probs=79.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+.+.+.....++.+|||+|||+|..+..+++...   +++++|+++.+++.++++.....      .+++++++|+.
T Consensus        24 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~------~~~~~~~~d~~   94 (246)
T 1y8c_A           24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQG------LKPRLACQDIS   94 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTT------CCCEEECCCGG
T ss_pred             HHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcC------CCeEEEecccc
Confidence            4455555543334778999999999999999998853   89999999999999999887611      27889999965


Q ss_pred             hhhHHHhhhccCCceeEEecCc-ccccccc---ce---eeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAP-AESWMNI---PV---CINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~-~~~~~~~---p~---~~~~~~~~p~g~  138 (139)
                      + +     ..+ ++||+|+++. ++|++.+   +.   ...++.++|+|.
T Consensus        95 ~-~-----~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~  137 (246)
T 1y8c_A           95 N-L-----NIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGV  137 (246)
T ss_dssp             G-C-----CCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEE
T ss_pred             c-C-----Ccc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcE
Confidence            4 1     112 6799999998 9999843   22   223566666663

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.46  E-value=5.4e-14  Score=103.67  Aligned_cols=108  Identities=11%  Similarity=0.082  Sum_probs=72.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhh--HHHhhhc
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRI--ETVELMM  105 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~  105 (139)
                      ++.+|||+|||+|..+..++...  ..+|+|+|+|+.+++.|+++... +........++++.+.|+....  .++....
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE--IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence            47899999999998777666543  23899999999999999998765 3200000013678788753211  2332233


Q ss_pred             cCCceeEEecCccccccccc------eeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIP------VCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p------~~~~~~~~~p~g~  138 (139)
                      +.++||+|++..++||+.++      ....++.++|+|.
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~  164 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGK  164 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEE
T ss_pred             cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCE
Confidence            45789999999999986432      3334777888874

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.46  E-value=7.5e-14  Score=101.67  Aligned_cols=97  Identities=13%  Similarity=0.031  Sum_probs=73.5

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .++++.+|||+|||+|.++..+++....  +|+++|+++.+++.|++++.. +.     ..+++++++|+.+..      
T Consensus       122 ~~~~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~-----~~~v~~~~~D~~~~~------  188 (278)
T 2frn_A          122 VAKPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRDFP------  188 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTTCC------
T ss_pred             hCCCCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEECCHHHhc------
Confidence            3577899999999999999999998753  799999999999999999987 54     245999999976521      


Q ss_pred             ccCCceeEEecCccccccccceeeeeeeccCCC
Q psy5757         105 MKFDRYDFLPHAPAESWMNIPVCINYTATMPEG  137 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g  137 (139)
                       ..++||+|+++++.+. .......++.++|+|
T Consensus       189 -~~~~fD~Vi~~~p~~~-~~~l~~~~~~LkpgG  219 (278)
T 2frn_A          189 -GENIADRILMGYVVRT-HEFIPKALSIAKDGA  219 (278)
T ss_dssp             -CCSCEEEEEECCCSSG-GGGHHHHHHHEEEEE
T ss_pred             -ccCCccEEEECCchhH-HHHHHHHHHHCCCCe
Confidence             1467999999988443 122222344455554

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.46  E-value=8.7e-14  Score=97.53  Aligned_cols=101  Identities=13%  Similarity=0.127  Sum_probs=71.5

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ++++.+|||+|||+|..+..+++..+ .++|+|+|+|+.+++.+.+..+.       ..++.++++|+.+. ... .. .
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~-------~~~v~~~~~d~~~~-~~~-~~-~  123 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE-------RNNIIPLLFDASKP-WKY-SG-I  123 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHH-------CSSEEEECSCTTCG-GGT-TT-T
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhc-------CCCeEEEEcCCCCc-hhh-cc-c
Confidence            46788999999999999999999885 66999999999988777665544       25788888886542 110 01 1


Q ss_pred             CCceeEEecCccccccccc-eeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIP-VCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p-~~~~~~~~~p~g~  138 (139)
                      .++||+|+++...+..... ....++.++|+|.
T Consensus       124 ~~~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~  156 (210)
T 1nt2_A          124 VEKVDLIYQDIAQKNQIEILKANAEFFLKEKGE  156 (210)
T ss_dssp             CCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEE
T ss_pred             ccceeEEEEeccChhHHHHHHHHHHHHhCCCCE
Confidence            2679999998543311111 2344777888774

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.46  E-value=4.5e-14  Score=97.60  Aligned_cols=90  Identities=21%  Similarity=0.199  Sum_probs=71.7

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      +.+|||+|||+|..+..+++...   +++++|+++.+++.++++.          .+++++++|+.+ +     +.+.++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~----------~~~~~~~~d~~~-~-----~~~~~~  102 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTH----------PSVTFHHGTITD-L-----SDSPKR  102 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHC----------TTSEEECCCGGG-G-----GGSCCC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhC----------CCCeEEeCcccc-c-----ccCCCC
Confidence            78999999999999999999843   8999999999999998873          578899999654 2     223578


Q ss_pred             eeEEecCccccccc--cce---eeeeeeccCCCC
Q psy5757         110 YDFLPHAPAESWMN--IPV---CINYTATMPEGS  138 (139)
Q Consensus       110 ~D~vi~~~~~~~~~--~p~---~~~~~~~~p~g~  138 (139)
                      ||+|+++.++|++.  ++.   ...++.++|+|.
T Consensus       103 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~  136 (203)
T 3h2b_A          103 WAGLLAWYSLIHMGPGELPDALVALRMAVEDGGG  136 (203)
T ss_dssp             EEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEE
T ss_pred             eEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcE
Confidence            99999999999986  332   333566666663

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.46  E-value=1e-12  Score=91.02  Aligned_cols=101  Identities=19%  Similarity=0.110  Sum_probs=76.8

Q ss_pred             hcccccChHHHHHHHHHhccc-CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccC
Q psy5757           6 IGAAIGGISAILTYLSIIQPH-LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTD   84 (139)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~   84 (139)
                      +++....+.....+...+... ..++.+|||+|||+|.++..+++...  .+++++|+++.+++.+++++....     .
T Consensus        25 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~-----~   97 (207)
T 1wy7_A           25 LEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFK-----G   97 (207)
T ss_dssp             GTCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGT-----T
T ss_pred             eeeecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcC-----C
Confidence            344455565666666555321 34678999999999999999998742  289999999999999999987611     2


Q ss_pred             CcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757          85 GHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        85 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                       +++++++|+.+ +        ..+||+|++|+++|+..
T Consensus        98 -~~~~~~~d~~~-~--------~~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           98 -KFKVFIGDVSE-F--------NSRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             -SEEEEESCGGG-C--------CCCCSEEEECCCCSSSS
T ss_pred             -CEEEEECchHH-c--------CCCCCEEEEcCCCcccc
Confidence             79999999654 1        13799999999988765

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.45  E-value=1.8e-13  Score=99.43  Aligned_cols=103  Identities=17%  Similarity=0.137  Sum_probs=78.4

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      .+++.+.  ..++.+|||+|||+|..+..+++...   +++++|+++.+++.+++++....      .+++++++|+.+ 
T Consensus       111 ~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~-  178 (286)
T 3m70_A          111 DVVDAAK--IISPCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKEN------LNISTALYDINA-  178 (286)
T ss_dssp             HHHHHHH--HSCSCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCGGG-
T ss_pred             HHHHHhh--ccCCCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcC------CceEEEEecccc-
Confidence            3444443  24778999999999999999999853   99999999999999999987721      278999999654 


Q ss_pred             hHHHhhhccCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757          98 IETVELMMKFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      +.      ..++||+|+++.++||+..+.     ....+.++|+|.
T Consensus       179 ~~------~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  218 (286)
T 3m70_A          179 AN------IQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGY  218 (286)
T ss_dssp             CC------CCSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEE
T ss_pred             cc------ccCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcE
Confidence            11      146799999999999987553     223555666653

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.45  E-value=6.3e-14  Score=98.81  Aligned_cols=92  Identities=13%  Similarity=0.132  Sum_probs=68.9

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ...++.+|||+|||+|..+..+++...   +++++|+++.+++.++++  .        ++++++++|+.+.++     .
T Consensus        45 ~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~--~--------~~~~~~~~d~~~~~~-----~  106 (226)
T 3m33_A           45 LLTPQTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARAN--A--------PHADVYEWNGKGELP-----A  106 (226)
T ss_dssp             HCCTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHH--C--------TTSEEEECCSCSSCC-----T
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHh--C--------CCceEEEcchhhccC-----C
Confidence            357889999999999999999999843   999999999999999887  2        678899999643222     2


Q ss_pred             c-CCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757         106 K-FDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus       106 ~-~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      + .++||+|+++..   ........++.++|+|.
T Consensus       107 ~~~~~fD~v~~~~~---~~~~l~~~~~~LkpgG~  137 (226)
T 3m33_A          107 GLGAPFGLIVSRRG---PTSVILRLPELAAPDAH  137 (226)
T ss_dssp             TCCCCEEEEEEESC---CSGGGGGHHHHEEEEEE
T ss_pred             cCCCCEEEEEeCCC---HHHHHHHHHHHcCCCcE
Confidence            3 468999999832   22223344566666664

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.45  E-value=7.5e-14  Score=105.96  Aligned_cols=78  Identities=19%  Similarity=0.255  Sum_probs=66.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|.++..+++...   +++++|+|+.+++.|++++.. +.       +++++++|+.+...      +
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~-------~v~~~~~D~~~~~~------~  295 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANAL-------KAQALHSDVDEALT------E  295 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTC-------CCEEEECSTTTTSC------T
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCC-------CeEEEEcchhhccc------c
Confidence            3678999999999999999999843   999999999999999999987 32       48899999765211      2


Q ss_pred             CCceeEEecCccccc
Q psy5757         107 FDRYDFLPHAPAESW  121 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~  121 (139)
                      .++||+|++|+++|+
T Consensus       296 ~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          296 EARFDIIVTNPPFHV  310 (381)
T ss_dssp             TCCEEEEEECCCCCT
T ss_pred             CCCeEEEEECCchhh
Confidence            468999999999998

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.45  E-value=5.1e-13  Score=92.85  Aligned_cols=92  Identities=16%  Similarity=0.119  Sum_probs=70.3

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+.+.+.. ..++.+|||+|||+|..+..++....  .+|+++|+++.+++.|++++.. +.      .+++++++|+
T Consensus        42 ~~~l~~~l~~-~~~~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~------~~v~~~~~D~  112 (202)
T 2fpo_A           42 RETLFNWLAP-VIVDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKA------GNARVVNSNA  112 (202)
T ss_dssp             HHHHHHHHHH-HHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCH
T ss_pred             HHHHHHHHHh-hcCCCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCH
Confidence            3344444432 12678999999999999998777653  2899999999999999999987 43      6899999996


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccc
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      .+.++     ...++||+|++++++|+
T Consensus       113 ~~~~~-----~~~~~fD~V~~~~p~~~  134 (202)
T 2fpo_A          113 MSFLA-----QKGTPHNIVFVDPPFRR  134 (202)
T ss_dssp             HHHHS-----SCCCCEEEEEECCSSST
T ss_pred             HHHHh-----hcCCCCCEEEECCCCCC
Confidence            55222     13457999999999773

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.45  E-value=9.4e-14  Score=100.20  Aligned_cols=91  Identities=10%  Similarity=0.182  Sum_probs=68.2

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh---hccccccCCcEEEEEccchhhhHHH-h
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH---SNARLLTDGHIKFVALGMIKRIETV-E  102 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~---~~~~~~~~~~i~~~~~d~~~~~~~~-~  102 (139)
                      ..++.+|||+|||+|..+..++.+. +..+++++|+++.+++.|++++..   .-   + .++++++++|+.+..... .
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~---l-~~~v~~~~~D~~~~~~~~~~  108 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAA---F-SARIEVLEADVTLRAKARVE  108 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTT---T-GGGEEEEECCTTCCHHHHHH
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCC---C-cceEEEEeCCHHHHhhhhhh
Confidence            4567899999999999999999998 356999999999999999999764   11   1 246999999977632211 1


Q ss_pred             hhccCCceeEEecCcccccc
Q psy5757         103 LMMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~~~~  122 (139)
                      ...+.++||+|++|+++++.
T Consensus       109 ~~~~~~~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          109 AGLPDEHFHHVIMNPPYNDA  128 (260)
T ss_dssp             TTCCTTCEEEEEECCCC---
T ss_pred             hccCCCCcCEEEECCCCcCC
Confidence            11235679999999988765

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.45  E-value=2e-13  Score=92.51  Aligned_cols=91  Identities=16%  Similarity=0.168  Sum_probs=70.0

Q ss_pred             cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEE
Q psy5757           9 AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIK   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~   88 (139)
                      .++.+. ...+++.+.....++.+|||+|||+|.++..+++..    +++++|+|+.+++.      .        .+++
T Consensus         4 ~~P~~~-~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~------~--------~~~~   64 (170)
T 3q87_B            4 YEPGED-TYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES------H--------RGGN   64 (170)
T ss_dssp             CCCCHH-HHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT------C--------SSSC
T ss_pred             cCcCcc-HHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc------c--------cCCe
Confidence            344443 556666664222567799999999999999999876    89999999999887      2        5678


Q ss_pred             EEEccchhhhHHHhhhccCCceeEEecCccccccccc
Q psy5757          89 FVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIP  125 (139)
Q Consensus        89 ~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p  125 (139)
                      ++++|+.+.+       +.++||+|++|+++|+..++
T Consensus        65 ~~~~d~~~~~-------~~~~fD~i~~n~~~~~~~~~   94 (170)
T 3q87_B           65 LVRADLLCSI-------NQESVDVVVFNPPYVPDTDD   94 (170)
T ss_dssp             EEECSTTTTB-------CGGGCSEEEECCCCBTTCCC
T ss_pred             EEECChhhhc-------ccCCCCEEEECCCCccCCcc
Confidence            9999965522       23679999999999987665

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.45  E-value=3.9e-14  Score=102.50  Aligned_cols=108  Identities=12%  Similarity=0.092  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEc
Q psy5757          13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVAL   92 (139)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~   92 (139)
                      +.....+++.+.  +.++.+|||+|||+|.++..+++...   +|+++|+|+.+++.|++++....      .+.++...
T Consensus        31 ~~~~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~------v~~~~~~~   99 (261)
T 3iv6_A           31 PSDRENDIFLEN--IVPGSTVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRC------VTIDLLDI   99 (261)
T ss_dssp             CCHHHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSC------CEEEECCT
T ss_pred             HHHHHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcc------ceeeeeec
Confidence            345566666664  57889999999999999999999864   99999999999999999875510      12222222


Q ss_pred             cchhhhHHHhhhccCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757          93 GMIKRIETVELMMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus        93 d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                      +..  ..    ....++||+|+++.++|++..+     ....++.+ |+|.
T Consensus       100 ~~~--~~----~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~  143 (261)
T 3iv6_A          100 TAE--IP----KELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGT  143 (261)
T ss_dssp             TSC--CC----GGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSE
T ss_pred             ccc--cc----cccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcE
Confidence            210  00    0113579999999999987532     23335566 8874

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.45  E-value=4e-13  Score=95.43  Aligned_cols=83  Identities=17%  Similarity=0.224  Sum_probs=66.9

Q ss_pred             hcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHH
Q psy5757          23 IQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETV  101 (139)
Q Consensus        23 l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~  101 (139)
                      +..+++++.+|+|+|||+|.++..+++.. +..+|+++|+++.+++.|++++.. ++     ..+++++++|..+.+.  
T Consensus        15 i~~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~~~al~~A~~N~~~~gl-----~~~I~~~~gD~l~~~~--   86 (230)
T 3lec_A           15 VANYVPKGARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVVNGPYQSALKNVSEHGL-----TSKIDVRLANGLSAFE--   86 (230)
T ss_dssp             HHTTSCTTEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGGCC--
T ss_pred             HHHhCCCCCEEEEECCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhhccc--
Confidence            34456888999999999999999999986 455899999999999999999988 65     4579999999766432  


Q ss_pred             hhhccCCceeEEecCc
Q psy5757         102 ELMMKFDRYDFLPHAP  117 (139)
Q Consensus       102 ~~~~~~~~~D~vi~~~  117 (139)
                          +.++||+|+...
T Consensus        87 ----~~~~~D~IviaG   98 (230)
T 3lec_A           87 ----EADNIDTITICG   98 (230)
T ss_dssp             ----GGGCCCEEEEEE
T ss_pred             ----cccccCEEEEeC
Confidence                123699876433

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.44  E-value=4.1e-13  Score=95.16  Aligned_cols=84  Identities=18%  Similarity=0.226  Sum_probs=67.3

Q ss_pred             HhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHH
Q psy5757          22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIET  100 (139)
Q Consensus        22 ~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~  100 (139)
                      .+..+++++.+|+|+|||+|.++..+++.. +..+|+++|+++.+++.|++++.. ++     ..+++++.+|..+.++ 
T Consensus         8 ~l~~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl-----~~~i~~~~~d~l~~l~-   80 (225)
T 3kr9_A            8 LVASFVSQGAILLDVGSDHAYLPIELVERG-QIKSAIAGEVVEGPYQSAVKNVEAHGL-----KEKIQVRLANGLAAFE-   80 (225)
T ss_dssp             HHHTTSCTTEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGGCC-
T ss_pred             HHHHhCCCCCEEEEeCCCcHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEECchhhhcc-
Confidence            334456888999999999999999999986 456899999999999999999998 65     3579999999765332 


Q ss_pred             HhhhccCCceeEEecCc
Q psy5757         101 VELMMKFDRYDFLPHAP  117 (139)
Q Consensus       101 ~~~~~~~~~~D~vi~~~  117 (139)
                           +.++||+|+...
T Consensus        81 -----~~~~~D~IviaG   92 (225)
T 3kr9_A           81 -----ETDQVSVITIAG   92 (225)
T ss_dssp             -----GGGCCCEEEEEE
T ss_pred             -----cCcCCCEEEEcC
Confidence                 112699887544

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.44  E-value=3.7e-14  Score=95.47  Aligned_cols=90  Identities=11%  Similarity=0.113  Sum_probs=72.8

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..++.+|||+|||+|..+..+++...   +++++|+++.+++.++++  .        ++++++.+|    .     +.+
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~--~--------~~v~~~~~d----~-----~~~   72 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEK--F--------DSVITLSDP----K-----EIP   72 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHH--C--------TTSEEESSG----G-----GSC
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHh--C--------CCcEEEeCC----C-----CCC
Confidence            56778999999999999999999884   999999999999999887  2        678888887    1     123


Q ss_pred             CCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                      .++||+|+++.++|++.++..   ..++.++|+|.
T Consensus        73 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~  107 (170)
T 3i9f_A           73 DNSVDFILFANSFHDMDDKQHVISEVKRILKDDGR  107 (170)
T ss_dssp             TTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEE
T ss_pred             CCceEEEEEccchhcccCHHHHHHHHHHhcCCCCE
Confidence            568999999999999987643   23566666663

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.44  E-value=8.3e-14  Score=100.15  Aligned_cols=103  Identities=12%  Similarity=0.111  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEc
Q psy5757          13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVAL   92 (139)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~   92 (139)
                      +.....+.+.+.  ..++.+|||+|||+|..+..+++.   .++++|+|+|+.+++.++++           .+++++++
T Consensus        20 ~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~~   83 (261)
T 3ege_A           20 IRIVNAIINLLN--LPKGSVIADIGAGTGGYSVALANQ---GLFVYAVEPSIVMRQQAVVH-----------PQVEWFTG   83 (261)
T ss_dssp             HHHHHHHHHHHC--CCTTCEEEEETCTTSHHHHHHHTT---TCEEEEECSCHHHHHSSCCC-----------TTEEEECC
T ss_pred             HHHHHHHHHHhC--CCCCCEEEEEcCcccHHHHHHHhC---CCEEEEEeCCHHHHHHHHhc-----------cCCEEEEC
Confidence            344555555554  467889999999999999999983   34999999999888766443           37899999


Q ss_pred             cchhhhHHHhhhccCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757          93 GMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus        93 d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      |+.+ +     +.+.++||+|+++.++|++.++...   .++.++ +|.
T Consensus        84 d~~~-~-----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~  125 (261)
T 3ege_A           84 YAEN-L-----ALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGT  125 (261)
T ss_dssp             CTTS-C-----CSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSC
T ss_pred             chhh-C-----CCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcE
Confidence            9654 2     2235689999999999999876533   366667 663

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.44  E-value=4.2e-13  Score=96.07  Aligned_cols=82  Identities=21%  Similarity=0.208  Sum_probs=66.2

Q ss_pred             hcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHH
Q psy5757          23 IQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETV  101 (139)
Q Consensus        23 l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~  101 (139)
                      +..+++++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++.. ++     ..+++++++|..+.+.  
T Consensus        15 i~~~v~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~avDi~~~al~~A~~N~~~~gl-----~~~I~v~~gD~l~~~~--   86 (244)
T 3gnl_A           15 VASYITKNERIADIGSDHAYLPCFAVKNQ-TASFAIAGEVVDGPFQSAQKQVRSSGL-----TEQIDVRKGNGLAVIE--   86 (244)
T ss_dssp             HHTTCCSSEEEEEETCSTTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTTC-----TTTEEEEECSGGGGCC--
T ss_pred             HHHhCCCCCEEEEECCccHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CceEEEEecchhhccC--
Confidence            34456888999999999999999999986 455899999999999999999988 65     3579999999766332  


Q ss_pred             hhhccCCceeEEecC
Q psy5757         102 ELMMKFDRYDFLPHA  116 (139)
Q Consensus       102 ~~~~~~~~~D~vi~~  116 (139)
                          +.++||+|+..
T Consensus        87 ----~~~~~D~Ivia   97 (244)
T 3gnl_A           87 ----KKDAIDTIVIA   97 (244)
T ss_dssp             ----GGGCCCEEEEE
T ss_pred             ----ccccccEEEEe
Confidence                12359988754

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.44  E-value=6.8e-13  Score=96.47  Aligned_cols=97  Identities=15%  Similarity=0.125  Sum_probs=77.7

Q ss_pred             hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757           5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT   83 (139)
Q Consensus         5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~   83 (139)
                      .+|+ ++..+.++.++++.+.  ..++ +|||+|||+|.++..+++...   +|+++|+|+.+++.+++++..       
T Consensus        24 ~~GQnfL~d~~i~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~-------   90 (271)
T 3fut_A           24 RFGQNFLVSEAHLRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSG-------   90 (271)
T ss_dssp             TSSCCEECCHHHHHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTT-------
T ss_pred             cCCccccCCHHHHHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCC-------
Confidence            4677 4457778888888886  5777 999999999999999999874   999999999999999988754       


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                       .+++++++|+.+ +.   .. ....+|.|++|++++
T Consensus        91 -~~v~vi~~D~l~-~~---~~-~~~~~~~iv~NlPy~  121 (271)
T 3fut_A           91 -LPVRLVFQDALL-YP---WE-EVPQGSLLVANLPYH  121 (271)
T ss_dssp             -SSEEEEESCGGG-SC---GG-GSCTTEEEEEEECSS
T ss_pred             -CCEEEEECChhh-CC---hh-hccCccEEEecCccc
Confidence             689999999765 21   11 112579999999854

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.44  E-value=8.7e-13  Score=91.12  Aligned_cols=97  Identities=19%  Similarity=0.200  Sum_probs=69.2

Q ss_pred             cccccChHHHHHHHHHhccc-CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCC
Q psy5757           7 GAAIGGISAILTYLSIIQPH-LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDG   85 (139)
Q Consensus         7 ~~~~~~~~~~~~~~~~l~~~-~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~   85 (139)
                      ++..........+...+... ..++.+|||+|||+|.++..+++..  ..+++++|+++.+++.|++++          .
T Consensus        28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~----------~   95 (200)
T 1ne2_A           28 EQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNC----------G   95 (200)
T ss_dssp             --CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHC----------T
T ss_pred             eecCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhc----------C
Confidence            34445555555666555321 3467899999999999999999873  237999999999999998875          3


Q ss_pred             cEEEEEccchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757          86 HIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        86 ~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                      +++++++|+.+ +        .++||+|++++++|+..+
T Consensus        96 ~~~~~~~d~~~-~--------~~~~D~v~~~~p~~~~~~  125 (200)
T 1ne2_A           96 GVNFMVADVSE-I--------SGKYDTWIMNPPFGSVVK  125 (200)
T ss_dssp             TSEEEECCGGG-C--------CCCEEEEEECCCC-----
T ss_pred             CCEEEECcHHH-C--------CCCeeEEEECCCchhccC
Confidence            67899999654 1        157999999999998864

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.44  E-value=8.3e-13  Score=91.73  Aligned_cols=94  Identities=15%  Similarity=0.108  Sum_probs=70.1

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+.+++.. ..++.+|||+|||+|.++..++....  .+|+++|+|+.+++.|++++.. +.    ..++++++.+|+
T Consensus        41 ~~~l~~~l~~-~~~~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~v~~~~~d~  113 (201)
T 2ift_A           41 KETLFNWLMP-YIHQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKC----SSEQAEVINQSS  113 (201)
T ss_dssp             HHHHHHHHHH-HHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTC----CTTTEEEECSCH
T ss_pred             HHHHHHHHHH-hcCCCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCC----CccceEEEECCH
Confidence            3445555542 12678999999999999998777653  3899999999999999999987 32    015899999996


Q ss_pred             hhhhHHHhhhccCCc-eeEEecCcccc
Q psy5757          95 IKRIETVELMMKFDR-YDFLPHAPAES  120 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~-~D~vi~~~~~~  120 (139)
                      .+...    ....++ ||+|+++++++
T Consensus       114 ~~~~~----~~~~~~~fD~I~~~~~~~  136 (201)
T 2ift_A          114 LDFLK----QPQNQPHFDVVFLDPPFH  136 (201)
T ss_dssp             HHHTT----SCCSSCCEEEEEECCCSS
T ss_pred             HHHHH----hhccCCCCCEEEECCCCC
Confidence            55221    112467 99999999976

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.43  E-value=2.7e-13  Score=95.56  Aligned_cols=103  Identities=11%  Similarity=0.180  Sum_probs=76.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+.+.+.....++.+|||+|||+|..+..+++...   +++++|+++.+++.++++.          ++++++++|+.
T Consensus        27 ~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~   93 (239)
T 3bxo_A           27 ASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL----------PDATLHQGDMR   93 (239)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC----------TTCEEEECCTT
T ss_pred             HHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC----------CCCEEEECCHH
Confidence            3345555554456788999999999999999999985   8999999999999998863          56888999965


Q ss_pred             hhhHHHhhhccCCceeEEe-cCccccccccc------eeeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLP-HAPAESWMNIP------VCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi-~~~~~~~~~~p------~~~~~~~~~p~g~  138 (139)
                      + +.      ..++||+|+ +..++||+.++      ....++.++|+|.
T Consensus        94 ~-~~------~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~  136 (239)
T 3bxo_A           94 D-FR------LGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGV  136 (239)
T ss_dssp             T-CC------CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEE
T ss_pred             H-cc------cCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeE
Confidence            4 11      145799999 45588988543      2233556666663

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.43  E-value=1.6e-13  Score=96.97  Aligned_cols=104  Identities=13%  Similarity=0.283  Sum_probs=77.1

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      ...+.+...++++.+|||+|||+|..+..+++. .   +++++|+++.+++.|+++.....      .+++++++|+.+ 
T Consensus        22 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~-   90 (243)
T 3d2l_A           22 EWVAWVLEQVEPGKRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETN------RHVDFWVQDMRE-   90 (243)
T ss_dssp             HHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCGGG-
T ss_pred             HHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcC------CceEEEEcChhh-
Confidence            344455545677899999999999999999887 3   99999999999999999887611      478899999654 


Q ss_pred             hHHHhhhccCCceeEEecCc-cccccccc------eeeeeeeccCCCC
Q psy5757          98 IETVELMMKFDRYDFLPHAP-AESWMNIP------VCINYTATMPEGS  138 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~-~~~~~~~p------~~~~~~~~~p~g~  138 (139)
                      +     .. .++||+|+++. ++||+.++      ....++.++|+|.
T Consensus        91 ~-----~~-~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~  132 (243)
T 3d2l_A           91 L-----EL-PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGK  132 (243)
T ss_dssp             C-----CC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEE
T ss_pred             c-----CC-CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeE
Confidence            1     11 26799999987 88888432      1223555666663

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.43  E-value=2e-13  Score=96.03  Aligned_cols=102  Identities=17%  Similarity=0.170  Sum_probs=73.6

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.++++++.       ..+++++++|+.+... +  ...
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-------~~~v~~~~~d~~~~~~-~--~~~  140 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-------RRNIVPILGDATKPEE-Y--RAL  140 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-------CTTEEEEECCTTCGGG-G--TTT
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-------cCCCEEEEccCCCcch-h--hcc
Confidence            45788999999999999999999875556999999999999999888765       2689999999765211 1  111


Q ss_pred             CCceeEEecCccccccccc-eeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIP-VCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p-~~~~~~~~~p~g~  138 (139)
                      .++||+|+++.+..+.... ....++.++|+|.
T Consensus       141 ~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~  173 (227)
T 1g8a_A          141 VPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGY  173 (227)
T ss_dssp             CCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEE
T ss_pred             cCCceEEEECCCCHhHHHHHHHHHHHhcCCCCE
Confidence            3479999998763222111 3333555666653

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.43  E-value=3.8e-13  Score=109.66  Aligned_cols=113  Identities=14%  Similarity=0.157  Sum_probs=83.1

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      +..+.+.+.  ..++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++.. ......+..+++++++|+
T Consensus       710 le~LLelL~--~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa  787 (950)
T 3htx_A          710 VEYALKHIR--ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI  787 (950)
T ss_dssp             HHHHHHHHH--HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred             HHHHHHHhc--ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence            334444443  24788999999999999999999885456999999999999999987653 110001236899999997


Q ss_pred             hhhhHHHhhhccCCceeEEecCcccccccccee-----eeeeeccCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVC-----INYTATMPE  136 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~-----~~~~~~~p~  136 (139)
                      .+ +     ....++||+|++..++||+.++..     ..++.++|+
T Consensus       788 ~d-L-----p~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG  828 (950)
T 3htx_A          788 LE-F-----DSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK  828 (950)
T ss_dssp             TS-C-----CTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             Hh-C-----CcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence            65 2     123568999999999999998653     235666664

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.43  E-value=7.9e-14  Score=96.99  Aligned_cols=92  Identities=18%  Similarity=0.246  Sum_probs=71.1

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .+.++.+|||+|||+|.++..+++...   +++++|+++.+++.++++.           +++++.+|+.+    +  . 
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~-----------~~~~~~~d~~~----~--~-   98 (211)
T 3e23_A           40 ELPAGAKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRL-----------GRPVRTMLFHQ----L--D-   98 (211)
T ss_dssp             TSCTTCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHH-----------TSCCEECCGGG----C--C-
T ss_pred             hcCCCCcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhc-----------CCceEEeeecc----C--C-
Confidence            467788999999999999999998843   9999999999999998875           24466777543    2  1 


Q ss_pred             cCCceeEEecCccccccc--cc---eeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMN--IP---VCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~--~p---~~~~~~~~~p~g~  138 (139)
                      ..++||+|+++.++|++.  ++   ....++.++|+|.
T Consensus        99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~  136 (211)
T 3e23_A           99 AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGL  136 (211)
T ss_dssp             CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcE
Confidence            357899999999999987  32   2333566666663

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.43  E-value=2e-12  Score=94.42  Aligned_cols=102  Identities=14%  Similarity=0.128  Sum_probs=76.3

Q ss_pred             hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5757           5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILHSNARLL   82 (139)
Q Consensus         5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~   82 (139)
                      .+|+ ++..+.+..++++.+.  ..++.+|||+|||+|.++..+++.... .++|+++|+|+.+++.++++. .      
T Consensus        19 ~~GQ~fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~------   89 (279)
T 3uzu_A           19 RFGQNFLVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G------   89 (279)
T ss_dssp             CCSCCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G------
T ss_pred             cCCccccCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C------
Confidence            4677 4557777888888886  578889999999999999999998852 244999999999999999884 3      


Q ss_pred             cCCcEEEEEccchhh-hHHHhhhccCCceeEEecCcc
Q psy5757          83 TDGHIKFVALGMIKR-IETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~-~~~~~~~~~~~~~D~vi~~~~  118 (139)
                        .+++++++|+.+. ++.+... .....+.|++|++
T Consensus        90 --~~v~~i~~D~~~~~~~~~~~~-~~~~~~~vv~NlP  123 (279)
T 3uzu_A           90 --ELLELHAGDALTFDFGSIARP-GDEPSLRIIGNLP  123 (279)
T ss_dssp             --GGEEEEESCGGGCCGGGGSCS-SSSCCEEEEEECC
T ss_pred             --CCcEEEECChhcCChhHhccc-ccCCceEEEEccC
Confidence              6899999997762 1211000 0003467888887

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.43  E-value=5.1e-13  Score=96.99  Aligned_cols=80  Identities=21%  Similarity=0.147  Sum_probs=68.2

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .+.++.+|||+|||+|.++..+++..+ .++|+++|+++.+++.|+++++. ++      .+++++.+|+.+. +     
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l------~~~~~~~~d~~~~-~-----  182 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKL------NNVIPILADNRDV-E-----  182 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTC------SSEEEEESCGGGC-C-----
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCC------CCEEEEECChHHc-C-----
Confidence            367889999999999999999999874 56999999999999999999988 54      6889999997652 2     


Q ss_pred             ccCCceeEEecCccc
Q psy5757         105 MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~  119 (139)
                       ..++||+|+++++.
T Consensus       183 -~~~~~D~Vi~d~p~  196 (272)
T 3a27_A          183 -LKDVADRVIMGYVH  196 (272)
T ss_dssp             -CTTCEEEEEECCCS
T ss_pred             -ccCCceEEEECCcc
Confidence             13579999999985

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.42  E-value=1.9e-13  Score=97.34  Aligned_cols=107  Identities=13%  Similarity=0.090  Sum_probs=72.8

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||||||+|.++..+++.. +...++|+|+++.+++.|++++.. .........|+.++++|+.+.++.   ..+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~---~~~  120 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPN---FFY  120 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHH---HCC
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhh---hCC
Confidence            566789999999999999999987 467999999999999999887653 100001136899999997653332   123


Q ss_pred             CCceeEEecCccccccc-----------cceeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMN-----------IPVCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~-----------~p~~~~~~~~~p~g~  138 (139)
                      .++||.|+++.+-.|..           .......+.++|+|.
T Consensus       121 ~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~  163 (235)
T 3ckk_A          121 KGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGL  163 (235)
T ss_dssp             TTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEE
T ss_pred             CcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCE
Confidence            56899998876655532           122334566667664

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.42  E-value=2e-13  Score=99.22  Aligned_cols=100  Identities=14%  Similarity=0.099  Sum_probs=75.6

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.+|||+|||+|..+..+++..  ..+++++|+++.+++.|++++.. +.     ..+++++++|+.+. +   .. 
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-~---~~-  129 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKR-----RFKVFFRAQDSYGR-H---MD-  129 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCC-----SSEEEEEESCTTTS-C---CC-
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCC-----CccEEEEECCcccc-c---cC-
Confidence            4788999999999999999988864  34899999999999999999877 33     25789999996541 1   10 


Q ss_pred             cCCceeEEecCcccccc----ccc---eeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWM----NIP---VCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~----~~p---~~~~~~~~~p~g~  138 (139)
                      +.++||+|+++.++|+.    .++   ....++.++|+|.
T Consensus       130 ~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~  169 (298)
T 1ri5_A          130 LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGY  169 (298)
T ss_dssp             CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEE
T ss_pred             CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCE
Confidence            35689999999999883    222   2333566667663

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.42  E-value=1.5e-13  Score=95.48  Aligned_cols=98  Identities=14%  Similarity=0.201  Sum_probs=72.7

Q ss_pred             HHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhH
Q psy5757          20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIE   99 (139)
Q Consensus        20 ~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~   99 (139)
                      ...+.....++.+|||+|||+|..+..+  ..   .+++++|+++.+++.++++.          .+++++++|+.+ + 
T Consensus        27 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l--~~---~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~-~-   89 (211)
T 2gs9_A           27 ERALKGLLPPGESLLEVGAGTGYWLRRL--PY---PQKVGVEPSEAMLAVGRRRA----------PEATWVRAWGEA-L-   89 (211)
T ss_dssp             HHHHHTTCCCCSEEEEETCTTCHHHHHC--CC---SEEEEECCCHHHHHHHHHHC----------TTSEEECCCTTS-C-
T ss_pred             HHHHHHhcCCCCeEEEECCCCCHhHHhC--CC---CeEEEEeCCHHHHHHHHHhC----------CCcEEEEccccc-C-
Confidence            3444433457889999999999998877  11   28999999999999998874          467788888544 1 


Q ss_pred             HHhhhccCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757         100 TVELMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       100 ~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                          +.+.++||+|+++.++|++.++...   ..+.++|+|.
T Consensus        90 ----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~  127 (211)
T 2gs9_A           90 ----PFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGA  127 (211)
T ss_dssp             ----CSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEE
T ss_pred             ----CCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCE
Confidence                2235689999999999999876432   2566666663

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.42  E-value=3.6e-13  Score=95.26  Aligned_cols=102  Identities=18%  Similarity=0.095  Sum_probs=72.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +.++.+|||+|||+|.++..+++..++.++++++|+++.+++.+.++.+.       ..+++++.+|+.+.. .+  +..
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-------~~~v~~~~~d~~~~~-~~--~~~  144 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-------RTNIIPVIEDARHPH-KY--RML  144 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-------CTTEEEECSCTTCGG-GG--GGG
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc-------cCCeEEEEcccCChh-hh--ccc
Confidence            46788999999999999999999975556999999999988888777765       268999999976521 11  123


Q ss_pred             CCceeEEecCccccccccc-eeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIP-VCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p-~~~~~~~~~p~g~  138 (139)
                      .++||+|+++.+..+.... ....++.++|+|.
T Consensus       145 ~~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~  177 (233)
T 2ipx_A          145 IAMVDVIFADVAQPDQTRIVALNAHTFLRNGGH  177 (233)
T ss_dssp             CCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEE
T ss_pred             CCcEEEEEEcCCCccHHHHHHHHHHHHcCCCeE
Confidence            4679999998762111110 2223556666653

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.41  E-value=1.3e-12  Score=97.49  Aligned_cols=110  Identities=14%  Similarity=0.157  Sum_probs=78.3

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCC-cEEEEEccch
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDG-HIKFVALGMI   95 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~-~i~~~~~d~~   95 (139)
                      .+.+.+.. ..++.+|||+|||+|.++..+++...   +|+++|+|+.+++.|++++.. ++     .. +++++++|+.
T Consensus       143 ~l~~~~~~-~~~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl-----~~~~v~~i~~D~~  213 (332)
T 2igt_A          143 WLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGL-----EQAPIRWICEDAM  213 (332)
T ss_dssp             HHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTC-----TTSCEEEECSCHH
T ss_pred             HHHHHHHh-cCCCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECcHH
Confidence            34444431 34678999999999999999999653   999999999999999999987 54     12 5999999987


Q ss_pred             hhhHHHhhhccCCceeEEecCccc-cc---------cccc---eeeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAE-SW---------MNIP---VCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~-~~---------~~~p---~~~~~~~~~p~g~  138 (139)
                      +.......  ..++||+|+++++. ..         ..+.   .....+.++|+|.
T Consensus       214 ~~l~~~~~--~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~  267 (332)
T 2igt_A          214 KFIQREER--RGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKAL  267 (332)
T ss_dssp             HHHHHHHH--HTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCC
T ss_pred             HHHHHHHh--cCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcE
Confidence            64332211  14579999999873 21         1111   2223567788885

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.41  E-value=3e-13  Score=93.71  Aligned_cols=107  Identities=13%  Similarity=0.046  Sum_probs=75.4

Q ss_pred             HHHHHHHhccc-CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEcc
Q psy5757          16 ILTYLSIIQPH-LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALG   93 (139)
Q Consensus        16 ~~~~~~~l~~~-~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d   93 (139)
                      ...+.+.+... ..++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++.. +.      .+++++++|
T Consensus        51 ~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~v~~~~~d  123 (207)
T 1jsx_A           51 VRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKL------ENIEPVQSR  123 (207)
T ss_dssp             HHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTC------SSEEEEECC
T ss_pred             HHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEecc
Confidence            34445544311 1247899999999999999999987 456999999999999999999887 44      569999999


Q ss_pred             chhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCC
Q psy5757          94 MIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEG  137 (139)
Q Consensus        94 ~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g  137 (139)
                      +.+. .      +.++||+|+++.. +..........+.++|+|
T Consensus       124 ~~~~-~------~~~~~D~i~~~~~-~~~~~~l~~~~~~L~~gG  159 (207)
T 1jsx_A          124 VEEF-P------SEPPFDGVISRAF-ASLNDMVSWCHHLPGEQG  159 (207)
T ss_dssp             TTTS-C------CCSCEEEEECSCS-SSHHHHHHHHTTSEEEEE
T ss_pred             hhhC-C------ccCCcCEEEEecc-CCHHHHHHHHHHhcCCCc
Confidence            6541 1      2467999998764 222222333344455554

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.40  E-value=2.5e-12  Score=97.25  Aligned_cols=93  Identities=19%  Similarity=0.191  Sum_probs=73.4

Q ss_pred             HHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEcc
Q psy5757          15 AILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALG   93 (139)
Q Consensus        15 ~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d   93 (139)
                      ....++...   ..++.+|||+|||+|.++..++... +.++++|+|+|+.+++.|++++.. ++     .++++++++|
T Consensus       206 la~~l~~~~---~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl-----~~~i~~~~~D  276 (373)
T 3tm4_A          206 IANAMIELA---ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGV-----LDKIKFIQGD  276 (373)
T ss_dssp             HHHHHHHHH---TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTC-----GGGCEEEECC
T ss_pred             HHHHHHHhh---cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCC-----CCceEEEECC
Confidence            344444444   4778899999999999999999986 355899999999999999999988 54     3689999999


Q ss_pred             chhhhHHHhhhccCCceeEEecCcccccc
Q psy5757          94 MIKRIETVELMMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus        94 ~~~~~~~~~~~~~~~~~D~vi~~~~~~~~  122 (139)
                      +.+ ++     .+.++||+|++|++++..
T Consensus       277 ~~~-~~-----~~~~~fD~Ii~npPyg~r  299 (373)
T 3tm4_A          277 ATQ-LS-----QYVDSVDFAISNLPYGLK  299 (373)
T ss_dssp             GGG-GG-----GTCSCEEEEEEECCCC--
T ss_pred             hhh-CC-----cccCCcCEEEECCCCCcc
Confidence            765 22     234689999999997653

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.40  E-value=9.9e-13  Score=95.11  Aligned_cols=94  Identities=18%  Similarity=0.159  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc--CCcEEEE
Q psy5757          13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT--DGHIKFV   90 (139)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~--~~~i~~~   90 (139)
                      +.....++..+.  +.++.+|||+|||+|.++..+++...+.++++++|+++.+++.|++++....    +  ..+++++
T Consensus        85 ~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----g~~~~~v~~~  158 (280)
T 1i9g_A           85 PKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY----GQPPDNWRLV  158 (280)
T ss_dssp             HHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH----TSCCTTEEEE
T ss_pred             HHHHHHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc----CCCCCcEEEE
Confidence            444556666664  6788899999999999999999986556799999999999999999986520    1  2689999


Q ss_pred             EccchhhhHHHhhhccCCceeEEecCcc
Q psy5757          91 ALGMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        91 ~~d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      ++|+.+.      ..+.++||+|+++..
T Consensus       159 ~~d~~~~------~~~~~~~D~v~~~~~  180 (280)
T 1i9g_A          159 VSDLADS------ELPDGSVDRAVLDML  180 (280)
T ss_dssp             CSCGGGC------CCCTTCEEEEEEESS
T ss_pred             ECchHhc------CCCCCceeEEEECCc
Confidence            9996542      122457999999764

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.40  E-value=8.8e-13  Score=95.60  Aligned_cols=88  Identities=14%  Similarity=0.228  Sum_probs=70.1

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      ..++..+.  +.++.+|||+|||+|.++..+++...+.++++++|+++.+++.|++++.. +.     .++++++.+|+.
T Consensus       102 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~  174 (277)
T 1o54_A          102 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----IERVTIKVRDIS  174 (277)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----GGGEEEECCCGG
T ss_pred             HHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----CCCEEEEECCHH
Confidence            34444443  56788999999999999999999965567999999999999999999877 43     257999999965


Q ss_pred             hhhHHHhhhccCCceeEEecCcc
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      +.       .+.++||+|+++++
T Consensus       175 ~~-------~~~~~~D~V~~~~~  190 (277)
T 1o54_A          175 EG-------FDEKDVDALFLDVP  190 (277)
T ss_dssp             GC-------CSCCSEEEEEECCS
T ss_pred             Hc-------ccCCccCEEEECCc
Confidence            52       12357999999875

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.39  E-value=3.9e-13  Score=96.04  Aligned_cols=117  Identities=13%  Similarity=0.053  Sum_probs=77.0

Q ss_pred             HHHHHhcccC--CCCCeEEEEcccCChhHHHHHHH--cCCCceEEEEeCCHHHHHHHHHHHHhhccccccCC-c------
Q psy5757          18 TYLSIIQPHL--NENSKVLEIGSGSGYLTNMISEL--MNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDG-H------   86 (139)
Q Consensus        18 ~~~~~l~~~~--~~~~~iLdiG~G~G~~~~~l~~~--~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~-~------   86 (139)
                      .+++.+...+  .++.+|||+|||+|.++..+++.  . +..+++|+|+|+.+++.|++++.....  .... +      
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~~~~--~~~~~~~~~~~~  114 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALLSP--AGLTARELERRE  114 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTTSH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHHhhh--ccccccchhhhh
Confidence            4444443322  25679999999999999999988  3 245899999999999999988765100  0001 1      


Q ss_pred             -------------------EE-------------EEEccchhhhHHHhhhccCCceeEEecCccccccccc---------
Q psy5757          87 -------------------IK-------------FVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIP---------  125 (139)
Q Consensus        87 -------------------i~-------------~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p---------  125 (139)
                                         ++             ++++|+.+....... ....+||+|++|++++...+.         
T Consensus       115 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~  193 (250)
T 1o9g_A          115 QSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAV-LAGSAPDVVLTDLPYGERTHWEGQVPGQPV  193 (250)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHH-HTTCCCSEEEEECCGGGSSSSSSCCCHHHH
T ss_pred             hhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccc-cCCCCceEEEeCCCeeccccccccccccHH
Confidence                               55             888997653211000 023479999999987765432         


Q ss_pred             ---eeeeeeeccCCCC
Q psy5757         126 ---VCINYTATMPEGS  138 (139)
Q Consensus       126 ---~~~~~~~~~p~g~  138 (139)
                         ....++.++|+|.
T Consensus       194 ~~~l~~~~~~LkpgG~  209 (250)
T 1o9g_A          194 AGLLRSLASALPAHAV  209 (250)
T ss_dssp             HHHHHHHHHHSCTTCE
T ss_pred             HHHHHHHHHhcCCCcE
Confidence               2334677888874

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.39  E-value=3.3e-12  Score=91.39  Aligned_cols=99  Identities=20%  Similarity=0.269  Sum_probs=72.7

Q ss_pred             hhcccc-cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757           5 KIGAAI-GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT   83 (139)
Q Consensus         5 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~   83 (139)
                      .+|+.+ ..+.....+.+.+.  ..++.+|||+|||+|.++..+++...   +++++|+|+.+++.+++++..       
T Consensus         7 ~~gQ~fl~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~-------   74 (244)
T 1qam_A            7 KHSQNFITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD-------   74 (244)
T ss_dssp             ---CCBCCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT-------
T ss_pred             cCCccccCCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhcc-------
Confidence            456643 45666677776664  46788999999999999999999874   999999999999999988754       


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      .++++++++|+.+ +.   .. ....+ .|++|+++++
T Consensus        75 ~~~v~~~~~D~~~-~~---~~-~~~~~-~vv~nlPy~~  106 (244)
T 1qam_A           75 HDNFQVLNKDILQ-FK---FP-KNQSY-KIFGNIPYNI  106 (244)
T ss_dssp             CCSEEEECCCGGG-CC---CC-SSCCC-EEEEECCGGG
T ss_pred             CCCeEEEEChHHh-CC---cc-cCCCe-EEEEeCCccc
Confidence            3689999999655 11   11 11235 6888887653

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.38  E-value=1.3e-12  Score=99.12  Aligned_cols=83  Identities=11%  Similarity=0.063  Sum_probs=67.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCC-cEEEEEccchhhhHHHhhhc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDG-HIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .++++|||+|||+|.++..++....  .+|+++|+|+.+++.|++++.. ++     .. +++++++|+.+.++.+..  
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~-----~~~~v~~~~~D~~~~l~~~~~--  281 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHL-----DMANHQLVVMDVFDYFKYARR--  281 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTC-----CCTTEEEEESCHHHHHHHHHH--
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCC-----CccceEEEECCHHHHHHHHHH--
Confidence            6778999999999999999998642  2899999999999999999988 54     23 899999998775443321  


Q ss_pred             cCCceeEEecCccc
Q psy5757         106 KFDRYDFLPHAPAE  119 (139)
Q Consensus       106 ~~~~~D~vi~~~~~  119 (139)
                      ...+||+|+++|+.
T Consensus       282 ~~~~fD~Ii~DPP~  295 (385)
T 2b78_A          282 HHLTYDIIIIDPPS  295 (385)
T ss_dssp             TTCCEEEEEECCCC
T ss_pred             hCCCccEEEECCCC
Confidence            23579999999885

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.38  E-value=2.1e-12  Score=92.10  Aligned_cols=91  Identities=20%  Similarity=0.252  Sum_probs=70.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...++..+.  +.++.+|||+|||+|.++..+++...+.++++++|+++.+++.|++++....    +.+++++..+|+.
T Consensus        85 ~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~----g~~~v~~~~~d~~  158 (258)
T 2pwy_A           85 ASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFW----QVENVRFHLGKLE  158 (258)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC----CCCCEEEEESCGG
T ss_pred             HHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc----CCCCEEEEECchh
Confidence            345555553  5788999999999999999999996556699999999999999999987620    1368999999965


Q ss_pred             hhhHHHhhhccCCceeEEecCcc
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      +.      ..+.++||+|+++..
T Consensus       159 ~~------~~~~~~~D~v~~~~~  175 (258)
T 2pwy_A          159 EA------ELEEAAYDGVALDLM  175 (258)
T ss_dssp             GC------CCCTTCEEEEEEESS
T ss_pred             hc------CCCCCCcCEEEECCc
Confidence            52      123457999998654

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.38  E-value=9.8e-13  Score=98.35  Aligned_cols=98  Identities=13%  Similarity=0.237  Sum_probs=71.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||+|.++..+++..  ..+++++|+++ +++.|+++++. ++     .++++++.+|+.+ +     ..
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g--~~~v~gvD~s~-~~~~a~~~~~~~~~-----~~~i~~~~~d~~~-~-----~~  127 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSE-ILYQAMDIIRLNKL-----EDTITLIKGKIEE-V-----HL  127 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESST-HHHHHHHHHHHTTC-----TTTEEEEESCTTT-S-----CC
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcC--CCEEEEEChHH-HHHHHHHHHHHcCC-----CCcEEEEEeeHHH-h-----cC
Confidence            4678899999999999999999974  24899999996 99999999877 44     3689999999654 1     22


Q ss_pred             cCCceeEEecCcc---ccccccce---eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPA---ESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~---~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      +.++||+|++++.   +++...+.   ....+.++|+|.
T Consensus       128 ~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~  166 (340)
T 2fyt_A          128 PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGS  166 (340)
T ss_dssp             SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEE
T ss_pred             CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcE
Confidence            3468999999883   33322221   222456666663

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.38  E-value=4.4e-13  Score=91.37  Aligned_cols=92  Identities=17%  Similarity=0.279  Sum_probs=69.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ++++.+|||+|||+|..+..+++...   +++++|+++.+++.++++.          .+++++++|+.+ +     ..+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~----------~~~~~~~~d~~~-~-----~~~  104 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDF----------PEARWVVGDLSV-D-----QIS  104 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHC----------TTSEEEECCTTT-S-----CCC
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhC----------CCCcEEEccccc-C-----CCC
Confidence            57888999999999999999999843   9999999999999998874          457888898654 1     123


Q ss_pred             CCceeEEecC-ccccccccc-----eeeeeeeccCCC
Q psy5757         107 FDRYDFLPHA-PAESWMNIP-----VCINYTATMPEG  137 (139)
Q Consensus       107 ~~~~D~vi~~-~~~~~~~~p-----~~~~~~~~~p~g  137 (139)
                      .++||+|+++ ..+|++..+     .....+.++|+|
T Consensus       105 ~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G  141 (195)
T 3cgg_A          105 ETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADG  141 (195)
T ss_dssp             CCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             CCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCC
Confidence            4679999998 678877432     222244555555

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.38  E-value=1.2e-13  Score=96.63  Aligned_cols=113  Identities=8%  Similarity=0.017  Sum_probs=73.7

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      ....+.+.  ..++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+.+.... ...  ...++++++++|+.
T Consensus        17 ~~~~~~l~--~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~--~~~~~v~~~~~d~~   91 (218)
T 3mq2_A           17 DAEFEQLR--SQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAK--GGLPNLLYLWATAE   91 (218)
T ss_dssp             HHHHHHHH--TTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGG--TCCTTEEEEECCST
T ss_pred             HHHHHHhh--ccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhh--cCCCceEEEecchh
Confidence            34445553  5778899999999999999999986 467999999999988864433322 000  11368999999966


Q ss_pred             hhhHHHhhhccCCceeEEecCcccc--ccccce---eeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAES--WMNIPV---CINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~--~~~~p~---~~~~~~~~p~g~  138 (139)
                      + ++   .....+.++++++....+  ++.++.   ...++.++|+|.
T Consensus        92 ~-l~---~~~~~d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  135 (218)
T 3mq2_A           92 R-LP---PLSGVGELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGAS  135 (218)
T ss_dssp             T-CC---SCCCEEEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEE
T ss_pred             h-CC---CCCCCCEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcE
Confidence            5 22   111114466555555553  665553   333667777764

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.38  E-value=5.8e-13  Score=95.08  Aligned_cols=87  Identities=16%  Similarity=0.164  Sum_probs=64.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhh-cccc--ccCCcEEEEEccchhhhHHHhhh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHS-NARL--LTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-~~~~--~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.+++++... ....  .+..|++++.+|+.+.+..   .
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~---~  123 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPN---F  123 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGG---T
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHH---h
Confidence            467899999999999999999988 4668999999999999999987651 0000  0236899999997653332   1


Q ss_pred             ccCCceeEEecCcc
Q psy5757         105 MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 ~~~~~~D~vi~~~~  118 (139)
                      .+.+++|.|+.+.+
T Consensus       124 ~~~~~~d~v~~~~p  137 (246)
T 2vdv_E          124 FEKGQLSKMFFCFP  137 (246)
T ss_dssp             SCTTCEEEEEEESC
T ss_pred             ccccccCEEEEECC
Confidence            23467898876544

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.38  E-value=1e-12  Score=95.57  Aligned_cols=105  Identities=13%  Similarity=0.124  Sum_probs=73.1

Q ss_pred             CCCeEEEEcccC--ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          29 ENSKVLEIGSGS--GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        29 ~~~~iLdiG~G~--G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ...++||+|||+  +..+..++.+..|.++|+++|.|+.|+..|+.++...     ...+++++++|+.+.-..+.....
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~-----~~~~~~~v~aD~~~~~~~l~~~~~  152 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST-----PEGRTAYVEADMLDPASILDAPEL  152 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC-----SSSEEEEEECCTTCHHHHHTCHHH
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC-----CCCcEEEEEecccChhhhhccccc
Confidence            346899999997  5566666666557889999999999999999987651     125799999998762111110100


Q ss_pred             CCcee-----EEecCccccccccce------eeeeeeccCCCC
Q psy5757         107 FDRYD-----FLPHAPAESWMNIPV------CINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D-----~vi~~~~~~~~~~p~------~~~~~~~~p~g~  138 (139)
                      ...||     .|+++.++||+.+..      ...+..++|+|.
T Consensus       153 ~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~  195 (277)
T 3giw_A          153 RDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSY  195 (277)
T ss_dssp             HTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCE
T ss_pred             ccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcE
Confidence            12243     688999999999853      233666777774

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.37  E-value=7.4e-13  Score=99.53  Aligned_cols=96  Identities=13%  Similarity=0.024  Sum_probs=76.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.|++++.. ++     .++++++.+|+.+.+       
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~-------  245 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGL-----ADRVTVAEGDFFKPL-------  245 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTSCC-------
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCC-----CCceEEEeCCCCCcC-------
Confidence            3567899999999999999999998 4679999999 9999999999877 54     358999999965411       


Q ss_pred             cCCceeEEecCccccccccce-----eeeeeeccCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPV-----CINYTATMPEG  137 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g  137 (139)
                      + ..||+|+++.++|++.++.     ...++.++|+|
T Consensus       246 ~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG  281 (374)
T 1qzz_A          246 P-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGG  281 (374)
T ss_dssp             S-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             C-CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCc
Confidence            1 2399999999999888763     22355666666

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.37  E-value=1.7e-12  Score=97.90  Aligned_cols=97  Identities=11%  Similarity=0.077  Sum_probs=79.7

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.|++++.. ++     .++++++.+|+.+       ..
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l-----~~~v~~~~~d~~~-------~~  265 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGL-----ADRCEILPGDFFE-------TI  265 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTT-------CC
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCc-----CCceEEeccCCCC-------CC
Confidence            3567899999999999999999997 5679999999 9999999999877 54     3689999999653       11


Q ss_pred             cCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      +. .||+|++..++|++.++.     ...++.++|+|.
T Consensus       266 p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~  302 (369)
T 3gwz_A          266 PD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSR  302 (369)
T ss_dssp             CS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCE
T ss_pred             CC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCE
Confidence            22 799999999999998774     334777888874

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.37  E-value=2.3e-13  Score=101.74  Aligned_cols=105  Identities=15%  Similarity=0.120  Sum_probs=77.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+++.+.  ..++.+|||+|||+|.++..+++.. +..+++++|+|+.+++.+++++.. +.       +.+++.+|+
T Consensus       185 ~~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~-------~~~~~~~d~  254 (343)
T 2pjd_A          185 SQLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANGV-------EGEVFASNV  254 (343)
T ss_dssp             HHHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTTC-------CCEEEECST
T ss_pred             HHHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC-------CCEEEEccc
Confidence            344555553  2356799999999999999999987 456999999999999999999877 33       356788886


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccc--------cceeeeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMN--------IPVCINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~--------~p~~~~~~~~~p~g~  138 (139)
                      .+.        ..++||+|++++++|+-.        ......++.++|+|.
T Consensus       255 ~~~--------~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~  298 (343)
T 2pjd_A          255 FSE--------VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGE  298 (343)
T ss_dssp             TTT--------CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred             ccc--------ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcE
Confidence            431        246799999999999621        123344667777764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.37  E-value=9.4e-13  Score=93.05  Aligned_cols=79  Identities=18%  Similarity=0.302  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +.++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+++++..       ..++.++.+|+.+.....  ...
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~-------~~~v~~~~~d~~~~~~~~--~~~  141 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAE-------RENIIPILGDANKPQEYA--NIV  141 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTT-------CTTEEEEECCTTCGGGGT--TTS
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhc-------CCCeEEEECCCCCccccc--ccC
Confidence            45788999999999999999999974 55999999999999999988765       368999999976511101  112


Q ss_pred             CCceeEEecC
Q psy5757         107 FDRYDFLPHA  116 (139)
Q Consensus       107 ~~~~D~vi~~  116 (139)
                       ++||+|++.
T Consensus       142 -~~~D~v~~~  150 (230)
T 1fbn_A          142 -EKVDVIYED  150 (230)
T ss_dssp             -CCEEEEEEC
T ss_pred             -ccEEEEEEe
Confidence             579999943

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.37  E-value=1.7e-13  Score=99.85  Aligned_cols=109  Identities=10%  Similarity=-0.057  Sum_probs=68.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc-cc---------c-c------------
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA-RL---------L-T------------   83 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~-~~---------~-~------------   83 (139)
                      .++.+|||+|||+|..+..++....  .+|+|+|+|+.+++.|++++.. ... .|         + +            
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  147 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  147 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCC--CeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence            3678999999999995544444332  3999999999999999886542 000 00         0 0            


Q ss_pred             -CCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc----cccc---eeeeeeeccCCCC
Q psy5757          84 -DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW----MNIP---VCINYTATMPEGS  138 (139)
Q Consensus        84 -~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~----~~~p---~~~~~~~~~p~g~  138 (139)
                       ...++++..|+.+..+.-....+.++||+|+++.++||    +.++   ....++.++|+|.
T Consensus       148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~  210 (289)
T 2g72_A          148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGH  210 (289)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred             HhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCE
Confidence             01145666775541110000122356999999999999    4443   3344788888875

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.36  E-value=8e-13  Score=98.08  Aligned_cols=95  Identities=12%  Similarity=0.028  Sum_probs=78.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      +..+|||+|||+|..+..+++.. +..+++++|+ +.+++.|++++.. ++     .++++++.+|+.+.       .+.
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-------~p~  234 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGL-----SGRAQVVVGSFFDP-------LPA  234 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTSC-------CCC
T ss_pred             CCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCc-----CcCeEEecCCCCCC-------CCC
Confidence            46799999999999999999988 4679999999 9999999999877 54     36899999996531       122


Q ss_pred             CceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                       .||+|++..++|++.++     ....++.++|+|.
T Consensus       235 -~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~  269 (332)
T 3i53_A          235 -GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGV  269 (332)
T ss_dssp             -SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCE
T ss_pred             -CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCE
Confidence             79999999999999886     2334778888885

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.36  E-value=8.3e-13  Score=99.37  Aligned_cols=99  Identities=11%  Similarity=0.091  Sum_probs=79.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .+..+|||+|||+|..+..+++.. |..+++++|+ +.+++.|++++.. +.     .++++++.+|+.+.-    .+.+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~----~~~p  246 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSG-----SERIHGHGANLLDRD----VPFP  246 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTT-----GGGEEEEECCCCSSS----CCCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCc-----ccceEEEEccccccC----CCCC
Confidence            456799999999999999999998 4679999999 9999999999876 43     368999999965410    0112


Q ss_pred             CCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                       +.||+|++..++|++.++.     ...++.++|+|.
T Consensus       247 -~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~  282 (363)
T 3dp7_A          247 -TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSK  282 (363)
T ss_dssp             -CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCE
T ss_pred             -CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcE
Confidence             5799999999999888763     334778888885

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.36  E-value=1.9e-12  Score=97.06  Aligned_cols=98  Identities=17%  Similarity=0.255  Sum_probs=73.8

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++++|||+|||+|.++..+++..  ..+|+|+|++ ++++.|+++... ++     ..+++++++|+.+ +     +.
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g--~~~v~gvD~s-~~l~~a~~~~~~~~~-----~~~v~~~~~d~~~-~-----~~  129 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECS-SISDYAVKIVKANKL-----DHVVTIIKGKVEE-V-----EL  129 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTT--CSEEEEEECS-THHHHHHHHHHHTTC-----TTTEEEEESCTTT-C-----CC
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCC--CCEEEEECcH-HHHHHHHHHHHHcCC-----CCcEEEEECcHHH-c-----cC
Confidence            3578899999999999999999983  3499999999 599999999887 55     3569999999655 1     23


Q ss_pred             cCCceeEEecCcccccc---ccce---eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWM---NIPV---CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~---~~p~---~~~~~~~~p~g~  138 (139)
                      +.++||+|++++..+++   ..+.   ....+.++|+|.
T Consensus       130 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~  168 (349)
T 3q7e_A          130 PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGL  168 (349)
T ss_dssp             SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEE
T ss_pred             CCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCE
Confidence            35789999998865544   2222   222566777764

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.36  E-value=2.7e-13  Score=96.56  Aligned_cols=111  Identities=14%  Similarity=0.006  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHH---cCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEE
Q psy5757          13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISEL---MNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKF   89 (139)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~---~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~   89 (139)
                      +.....+...+.  ..++.+|||+|||+|+.+..+++.   ..+.++|+++|+++.+++.|+.   .       ..++++
T Consensus        67 p~~~~~l~~~l~--~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~---~-------~~~v~~  134 (236)
T 2bm8_A           67 PDTQAVYHDMLW--ELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---D-------MENITL  134 (236)
T ss_dssp             HHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---G-------CTTEEE
T ss_pred             HHHHHHHHHHHH--hcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc---c-------CCceEE
Confidence            655555555554  235679999999999999999998   3456799999999999887761   1       268999


Q ss_pred             EEccchhhhHHHhhhccCCceeEEecCccccc-cccceeeeee-eccCCCC
Q psy5757          90 VALGMIKRIETVELMMKFDRYDFLPHAPAESW-MNIPVCINYT-ATMPEGS  138 (139)
Q Consensus        90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~-~~~p~~~~~~-~~~p~g~  138 (139)
                      +++|+.+. ..+.. ....+||+|+++.. |- ........++ .++|+|.
T Consensus       135 ~~gD~~~~-~~l~~-~~~~~fD~I~~d~~-~~~~~~~l~~~~r~~LkpGG~  182 (236)
T 2bm8_A          135 HQGDCSDL-TTFEH-LREMAHPLIFIDNA-HANTFNIMKWAVDHLLEEGDY  182 (236)
T ss_dssp             EECCSSCS-GGGGG-GSSSCSSEEEEESS-CSSHHHHHHHHHHHTCCTTCE
T ss_pred             EECcchhH-HHHHh-hccCCCCEEEECCc-hHhHHHHHHHHHHhhCCCCCE
Confidence            99997663 10111 11236999998766 32 1111222244 7888885

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.35  E-value=9.3e-13  Score=97.59  Aligned_cols=81  Identities=10%  Similarity=0.045  Sum_probs=65.4

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCce
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRY  110 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~  110 (139)
                      .+|||||||+|.++..+++.. +..+++++|+++.+++.|++++...     ..++++++++|+.+.+.    ..+.++|
T Consensus        91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~-----~~~rv~v~~~Da~~~l~----~~~~~~f  160 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIP-----RAPRVKIRVDDARMVAE----SFTPASR  160 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCC-----CTTTEEEEESCHHHHHH----TCCTTCE
T ss_pred             CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhcccc-----CCCceEEEECcHHHHHh----hccCCCC
Confidence            399999999999999999976 4569999999999999999988651     13789999999776433    2234689


Q ss_pred             eEEecCccccc
Q psy5757         111 DFLPHAPAESW  121 (139)
Q Consensus       111 D~vi~~~~~~~  121 (139)
                      |+|+++...++
T Consensus       161 DvIi~D~~~~~  171 (317)
T 3gjy_A          161 DVIIRDVFAGA  171 (317)
T ss_dssp             EEEEECCSTTS
T ss_pred             CEEEECCCCcc
Confidence            99999876553

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.35  E-value=1.3e-12  Score=94.78  Aligned_cols=81  Identities=19%  Similarity=0.279  Sum_probs=65.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +.++.+|||+|||+|..+..+++...+..+++++|+++.+++.|++++....    +.++++++.+|+.+.       .+
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----g~~~v~~~~~d~~~~-------~~  176 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY----DIGNVRTSRSDIADF-------IS  176 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS----CCTTEEEECSCTTTC-------CC
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcC----CCCcEEEEECchhcc-------Cc
Confidence            5678899999999999999999985455699999999999999999987620    236899999996552       12


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      .++||+|+++.+
T Consensus       177 ~~~fD~Vi~~~~  188 (275)
T 1yb2_A          177 DQMYDAVIADIP  188 (275)
T ss_dssp             SCCEEEEEECCS
T ss_pred             CCCccEEEEcCc
Confidence            457999999653

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.35  E-value=1e-12  Score=96.05  Aligned_cols=107  Identities=14%  Similarity=0.101  Sum_probs=76.5

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...++..+.   .++.+|||+|||+|..+..+++...   +++++|+++.+++.|++++.. +.   --..+++++++|+
T Consensus        72 ~~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~---~~~~~v~~~~~d~  142 (299)
T 3g2m_A           72 AREFATRTG---PVSGPVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPA---DVRDRCTLVQGDM  142 (299)
T ss_dssp             HHHHHHHHC---CCCSCEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCH---HHHTTEEEEECBT
T ss_pred             HHHHHHhhC---CCCCcEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhccc---ccccceEEEeCch
Confidence            344444443   3445999999999999999999853   899999999999999999876 21   0015799999996


Q ss_pred             hhhhHHHhhhccCCceeEEec-Cccccccccc-----eeeeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPH-APAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~-~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                      .+ ++      ..++||+|++ ..++|++...     ....++.++|+|.
T Consensus       143 ~~-~~------~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~  185 (299)
T 3g2m_A          143 SA-FA------LDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGK  185 (299)
T ss_dssp             TB-CC------CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             hc-CC------cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcE
Confidence            55 21      1467998884 5678877532     2344667777764

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.34  E-value=9.7e-13  Score=90.78  Aligned_cols=95  Identities=14%  Similarity=0.154  Sum_probs=69.6

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ++++ +|||+|||+|..+..+++...   +++++|+++.+++.++++.....      .+++++.+|+.+ +     ..+
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~-~-----~~~   91 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKG------VKITTVQSNLAD-F-----DIV   91 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHT------CCEEEECCBTTT-B-----SCC
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcC------CceEEEEcChhh-c-----CCC
Confidence            4666 999999999999999998743   99999999999999999887621      378899999654 1     123


Q ss_pred             CCceeEEecCccccc-cccc---eeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESW-MNIP---VCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~-~~~p---~~~~~~~~~p~g~  138 (139)
                      .++||+|+++.. |+ ..++   .....+.++|+|.
T Consensus        92 ~~~fD~v~~~~~-~~~~~~~~~~l~~~~~~L~pgG~  126 (202)
T 2kw5_A           92 ADAWEGIVSIFC-HLPSSLRQQLYPKVYQGLKPGGV  126 (202)
T ss_dssp             TTTCSEEEEECC-CCCHHHHHHHHHHHHTTCCSSEE
T ss_pred             cCCccEEEEEhh-cCCHHHHHHHHHHHHHhcCCCcE
Confidence            467999998643 33 1122   2333666777764

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.34  E-value=2.4e-12  Score=97.39  Aligned_cols=97  Identities=15%  Similarity=0.196  Sum_probs=74.5

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||+|.++..+++...  .+|+++|++ .+++.|+++++. ++     ..+++++++|+.+ +.     .
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~-~~-----~  126 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNL-----DHIVEVIEGSVED-IS-----L  126 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTC-----TTTEEEEESCGGG-CC-----C
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCC-----CCeEEEEECchhh-cC-----c
Confidence            46788999999999999999999853  399999999 999999999887 55     3569999999654 21     1


Q ss_pred             cCCceeEEecCcccccccc---c---eeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNI---P---VCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~---p---~~~~~~~~~p~g~  138 (139)
                      + ++||+|++++..|++..   +   ....++.++|+|.
T Consensus       127 ~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~  164 (376)
T 3r0q_C          127 P-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGV  164 (376)
T ss_dssp             S-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEE
T ss_pred             C-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeE
Confidence            2 68999999887666532   2   2233566777764

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.34  E-value=1.3e-12  Score=97.46  Aligned_cols=97  Identities=10%  Similarity=0.119  Sum_probs=75.6

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      +.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++... +.     .++++++.+|+.+...     ...+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~-----~~~~  247 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDL-----GGRVEFFEKNLLDARN-----FEGG  247 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTC-----GGGEEEEECCTTCGGG-----GTTC
T ss_pred             CCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCC-----CCceEEEeCCcccCcc-----cCCC
Confidence            7899999999999999999988 4679999999 8899999998877 44     3579999999765210     0234


Q ss_pred             ceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         109 RYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       109 ~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      .||+|++..++|++.++.     ...++.++|+|.
T Consensus       248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~  282 (352)
T 3mcz_A          248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGA  282 (352)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEE
T ss_pred             CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCE
Confidence            599999999999988752     223555666653

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.34  E-value=2.1e-13  Score=98.29  Aligned_cols=108  Identities=11%  Similarity=0.030  Sum_probs=72.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc-cc---------c-------------
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA-RL---------L-------------   82 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~-~~---------~-------------   82 (139)
                      ..++.+|||+|||+|.++..++....  .+|+|+|+|+.+++.|+++++. ... .|         +             
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  130 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence            35678999999999988777665542  2799999999999999987654 100 00         0             


Q ss_pred             cCCcEE-EEEccchhhhHHHhhhccCCceeEEecCccccccc----c---ceeeeeeeccCCCC
Q psy5757          83 TDGHIK-FVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN----I---PVCINYTATMPEGS  138 (139)
Q Consensus        83 ~~~~i~-~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~----~---p~~~~~~~~~p~g~  138 (139)
                      ...++. ++++|+.+..+ + ......+||+|+++.++|++.    +   .....++.++|+|.
T Consensus       131 ~~~~i~~~~~~D~~~~~~-~-~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~  192 (263)
T 2a14_A          131 LRAAVKRVLKCDVHLGNP-L-APAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGH  192 (263)
T ss_dssp             HHHHEEEEEECCTTSSST-T-TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred             HHhhhheEEeccccCCCC-C-CccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcE
Confidence            001343 78888655211 0 011245899999999999862    2   23445788888885

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.34  E-value=1.3e-11  Score=91.04  Aligned_cols=94  Identities=10%  Similarity=0.194  Sum_probs=73.4

Q ss_pred             HHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccc
Q psy5757          15 AILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGM   94 (139)
Q Consensus        15 ~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~   94 (139)
                      ....+++.+.  ..++.++||+|||+|..+..+++..+ .++|+++|+|+.+++.|++++..     .+ .+++++++|+
T Consensus        14 Ll~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~-----~g-~~v~~v~~d~   84 (301)
T 1m6y_A           14 MVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKE-----FS-DRVSLFKVSY   84 (301)
T ss_dssp             THHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGG-----GT-TTEEEEECCG
T ss_pred             HHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHh-----cC-CcEEEEECCH
Confidence            4667777775  57888999999999999999999974 56999999999999999999876     22 5899999997


Q ss_pred             hhhhHHHhhhccCCceeEEecCcc
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      .+ +..........+||.|++++.
T Consensus        85 ~~-l~~~l~~~g~~~~D~Vl~D~g  107 (301)
T 1m6y_A           85 RE-ADFLLKTLGIEKVDGILMDLG  107 (301)
T ss_dssp             GG-HHHHHHHTTCSCEEEEEEECS
T ss_pred             HH-HHHHHHhcCCCCCCEEEEcCc
Confidence            65 332111112257999998875

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.34  E-value=1.6e-12  Score=97.32  Aligned_cols=97  Identities=13%  Similarity=0.093  Sum_probs=76.2

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++.. +.     .++++++.+|+.+.+       
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~~-------  246 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGL-----SDRVDVVEGDFFEPL-------  246 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTC-----TTTEEEEECCTTSCC-------
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCC-----CCceEEEeCCCCCCC-------
Confidence            3567899999999999999999988 4679999999 8999999999877 54     358999999965421       


Q ss_pred             cCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      + ..||+|+++.++|++.++.     ...++.++|+|.
T Consensus       247 ~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~  283 (360)
T 1tw3_A          247 P-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGR  283 (360)
T ss_dssp             S-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEE
T ss_pred             C-CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcE
Confidence            1 2499999999999887663     223555666663

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.33  E-value=4e-12  Score=95.23  Aligned_cols=97  Identities=13%  Similarity=0.155  Sum_probs=72.5

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||+|.++..+++..  ..+|+++|+++ +++.|+++++. ++     .++++++.+|+.+ +.      
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~l-----~~~v~~~~~d~~~-~~------  112 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQAG--ARKIYAVEAST-MAQHAEVLVKSNNL-----TDRIVVIPGKVEE-VS------  112 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-HHHHHHHHHHHTTC-----TTTEEEEESCTTT-CC------
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhCC--CCEEEEECCHH-HHHHHHHHHHHcCC-----CCcEEEEEcchhh-CC------
Confidence            3578899999999999999999874  34999999996 88999988877 54     3689999999654 11      


Q ss_pred             cCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      ..++||+|+++..++++..+.     ....+.++|+|.
T Consensus       113 ~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~  150 (348)
T 2y1w_A          113 LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGN  150 (348)
T ss_dssp             CSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEE
T ss_pred             CCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeE
Confidence            125799999998866554321     122466677764

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.33  E-value=4.9e-12  Score=94.80  Aligned_cols=97  Identities=13%  Similarity=0.177  Sum_probs=77.5

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++.. +.     ..+++++.+|+.+.        
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~--------  252 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDIYKE--------  252 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTC-----TTTEEEEECCTTTS--------
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCC-----CCCEEEEeCccccC--------
Confidence            4677899999999999999999997 4679999999 9999999999877 44     34699999996541        


Q ss_pred             cCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                      +....|+|++..++|++.++     ....++.++|+|.
T Consensus       253 ~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~  290 (359)
T 1x19_A          253 SYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGR  290 (359)
T ss_dssp             CCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCE
T ss_pred             CCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCE
Confidence            12334999999999988762     2334777788874

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.33  E-value=2e-13  Score=96.61  Aligned_cols=100  Identities=14%  Similarity=0.063  Sum_probs=70.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCC-HHHHHHH---HHHHHh-hccccccCCcEEEEEccchhhhHHH
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHV-PQLVNSS---IQNILH-SNARLLTDGHIKFVALGMIKRIETV  101 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~-~~~~~~a---~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~  101 (139)
                      ..++.+|||+|||+|..+..+++.. +..+|+|+|+| +.+++.|   +++... +.      .++.++++|+.+ ++  
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~------~~v~~~~~d~~~-l~--   91 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGL------SNVVFVIAAAES-LP--   91 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTCC------SSEEEECCBTTB-CC--
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC------CCeEEEEcCHHH-hh--
Confidence            3677899999999999999999765 46799999999 6666665   776665 43      689999999665 22  


Q ss_pred             hhhccCCceeEEecCcccccc-----cc---ceeeeeeeccCCCC
Q psy5757         102 ELMMKFDRYDFLPHAPAESWM-----NI---PVCINYTATMPEGS  138 (139)
Q Consensus       102 ~~~~~~~~~D~vi~~~~~~~~-----~~---p~~~~~~~~~p~g~  138 (139)
                       .. .++.+|.+.++.+..+.     .+   .....++.++|+|.
T Consensus        92 -~~-~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~  134 (225)
T 3p2e_A           92 -FE-LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAH  134 (225)
T ss_dssp             -GG-GTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEE
T ss_pred             -hh-ccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcE
Confidence             11 23678888887653321     11   23344677777774

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.33  E-value=7.5e-12  Score=96.31  Aligned_cols=83  Identities=22%  Similarity=0.322  Sum_probs=67.5

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||+|.++..+++...   +|+|+|+++.+++.|++++.. ++      .+++++.+|+.+.+..+.  .
T Consensus       284 ~~~~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~------~~v~f~~~d~~~~l~~~~--~  352 (433)
T 1uwv_A          284 VQPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGL------QNVTFYHENLEEDVTKQP--W  352 (433)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCTTSCCSSSG--G
T ss_pred             CCCCCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCC------CceEEEECCHHHHhhhhh--h
Confidence            35678999999999999999999843   999999999999999999987 54      689999999766332211  1


Q ss_pred             cCCceeEEecCcccc
Q psy5757         106 KFDRYDFLPHAPAES  120 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~  120 (139)
                      ..++||+|+++|+..
T Consensus       353 ~~~~fD~Vv~dPPr~  367 (433)
T 1uwv_A          353 AKNGFDKVLLDPARA  367 (433)
T ss_dssp             GTTCCSEEEECCCTT
T ss_pred             hcCCCCEEEECCCCc
Confidence            235799999999854

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.33  E-value=3.4e-12  Score=91.90  Aligned_cols=104  Identities=13%  Similarity=-0.003  Sum_probs=76.3

Q ss_pred             cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEE
Q psy5757           9 AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIK   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~   88 (139)
                      ++..+.++.++++.+.  ..++.+|||+|||+|.++. +. .. .+.+|+++|+|+.+++.+++++..       .++++
T Consensus         3 fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~-~~~~v~avEid~~~~~~a~~~~~~-------~~~v~   70 (252)
T 1qyr_A            3 FLNDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GE-RLDQLTVIELDRDLAARLQTHPFL-------GPKLT   70 (252)
T ss_dssp             EECCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HT-TCSCEEEECCCHHHHHHHHTCTTT-------GGGEE
T ss_pred             CcCCHHHHHHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hC-CCCeEEEEECCHHHHHHHHHHhcc-------CCceE
Confidence            4556778888888885  5788899999999999999 65 44 322399999999999999887654       25899


Q ss_pred             EEEccchhh-hHHHhhhccCCceeEEecCcc--------ccccccce
Q psy5757          89 FVALGMIKR-IETVELMMKFDRYDFLPHAPA--------ESWMNIPV  126 (139)
Q Consensus        89 ~~~~d~~~~-~~~~~~~~~~~~~D~vi~~~~--------~~~~~~p~  126 (139)
                      ++++|+.+. ++..... + +..|.|++|++        +||+..+.
T Consensus        71 ~i~~D~~~~~~~~~~~~-~-~~~~~vvsNlPY~i~~~il~~ll~~~~  115 (252)
T 1qyr_A           71 IYQQDAMTFNFGELAEK-M-GQPLRVFGNLPYNISTPLMFHLFSYTD  115 (252)
T ss_dssp             EECSCGGGCCHHHHHHH-H-TSCEEEEEECCTTTHHHHHHHHHTTGG
T ss_pred             EEECchhhCCHHHhhcc-c-CCceEEEECCCCCccHHHHHHHHhcCC
Confidence            999998762 2222100 0 23589999998        66766543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.33  E-value=1.2e-12  Score=93.88  Aligned_cols=100  Identities=13%  Similarity=0.182  Sum_probs=71.2

Q ss_pred             HHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh
Q psy5757          19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI   98 (139)
Q Consensus        19 ~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~   98 (139)
                      +.+.+...+.++.+|||+|||+|..+..+++...   +++++|+|+.+++.++++..         .+  ++.+|+.+ +
T Consensus        44 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~---------~~--~~~~d~~~-~  108 (260)
T 2avn_A           44 IGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGV---------KN--VVEAKAED-L  108 (260)
T ss_dssp             HHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTC---------SC--EEECCTTS-C
T ss_pred             HHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcC---------CC--EEECcHHH-C
Confidence            3444444445788999999999999999998753   99999999999999988742         12  67788544 1


Q ss_pred             HHHhhhccCCceeEEecCcc-ccccccce---eeeeeeccCCCC
Q psy5757          99 ETVELMMKFDRYDFLPHAPA-ESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus        99 ~~~~~~~~~~~~D~vi~~~~-~~~~~~p~---~~~~~~~~p~g~  138 (139)
                           +.+.++||+|++..+ +|+..++.   ....+.++|+|.
T Consensus       109 -----~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  147 (260)
T 2avn_A          109 -----PFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGL  147 (260)
T ss_dssp             -----CSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEE
T ss_pred             -----CCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeE
Confidence                 123568999999864 55655543   223566666664

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.32  E-value=2.3e-12  Score=89.85  Aligned_cols=101  Identities=18%  Similarity=0.225  Sum_probs=70.4

Q ss_pred             HHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh
Q psy5757          19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI   98 (139)
Q Consensus        19 ~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~   98 (139)
                      ++..+.  ..++.+|||+|||+|..+..+++...   +++++|+++.+++.++++           .++.+...|+.+ +
T Consensus        44 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~~-~  106 (227)
T 3e8s_A           44 ILLAIL--GRQPERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAA-----------GAGEVHLASYAQ-L  106 (227)
T ss_dssp             HHHHHH--HTCCSEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHT-----------CSSCEEECCHHH-H
T ss_pred             HHHHhh--cCCCCEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHh-----------cccccchhhHHh-h
Confidence            444443  25668999999999999999999843   999999999999999876           245577777544 2


Q ss_pred             HHHhhhccCCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757          99 ETVELMMKFDRYDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus        99 ~~~~~~~~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                      .... .....+||+|+++.++| ..++..   ..++.++|+|.
T Consensus       107 ~~~~-~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~  147 (227)
T 3e8s_A          107 AEAK-VPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGA  147 (227)
T ss_dssp             HTTC-SCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEE
T ss_pred             cccc-cccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeE
Confidence            1101 11234599999999999 555432   22555666653

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.32  E-value=2e-12  Score=94.05  Aligned_cols=86  Identities=16%  Similarity=0.172  Sum_probs=67.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++++|||+|||+|..+..+++.. +..+++++|+++.+++.|++++.. +.  .+..++++++++|+.+.+..     .
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~--~~~~~rv~v~~~D~~~~l~~-----~  145 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAG--KLDDPRVDVQVDDGFMHIAK-----S  145 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHT--TTTSTTEEEEESCSHHHHHT-----C
T ss_pred             CCCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhcc--ccCCCceEEEECcHHHHHhh-----C
Confidence            466899999999999999999874 345999999999999999998754 11  02247899999998764331     2


Q ss_pred             CCceeEEecCccccc
Q psy5757         107 FDRYDFLPHAPAESW  121 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~  121 (139)
                      .++||+|+++...++
T Consensus       146 ~~~fD~Ii~d~~~~~  160 (275)
T 1iy9_A          146 ENQYDVIMVDSTEPV  160 (275)
T ss_dssp             CSCEEEEEESCSSCC
T ss_pred             CCCeeEEEECCCCCC
Confidence            467999999987654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.32  E-value=5.7e-12  Score=95.20  Aligned_cols=98  Identities=10%  Similarity=0.074  Sum_probs=75.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+| |+|.++..++... +..+++++|+++.+++.|++++.. ++      .+++++++|+.+.++   . ..
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~-~~~~v~~vDi~~~~l~~a~~~~~~~g~------~~v~~~~~D~~~~l~---~-~~  238 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSG-LPKRIAVLDIDERLTKFIEKAANEIGY------EDIEIFTFDLRKPLP---D-YA  238 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHHHHTC------CCEEEECCCTTSCCC---T-TT
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEEChhhhhch---h-hc
Confidence            4678999999 9999999998875 345999999999999999999988 54      489999999765222   1 01


Q ss_pred             CCceeEEecCccccccc--cceeeeeeeccCCC
Q psy5757         107 FDRYDFLPHAPAESWMN--IPVCINYTATMPEG  137 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~--~p~~~~~~~~~p~g  137 (139)
                      .++||+|++++++++..  ......++.++|+|
T Consensus       239 ~~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG  271 (373)
T 2qm3_A          239 LHKFDTFITDPPETLEAIRAFVGRGIATLKGPR  271 (373)
T ss_dssp             SSCBSEEEECCCSSHHHHHHHHHHHHHTBCSTT
T ss_pred             cCCccEEEECCCCchHHHHHHHHHHHHHcccCC
Confidence            35799999999887542  12233466777877

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.32  E-value=3.6e-12  Score=94.34  Aligned_cols=96  Identities=16%  Similarity=0.177  Sum_probs=74.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++.. +..+++++|++ .+++.|++++.. ++     ..+++++.+|+.+.      +. 
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~------~~-  229 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGV-----ASRYHTIAGSAFEV------DY-  229 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTC-----GGGEEEEESCTTTS------CC-
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCC-----CcceEEEecccccC------CC-
Confidence            667899999999999999999997 46699999999 999999999877 54     35799999996541      11 


Q ss_pred             CCceeEEecCccccccccce-----eeeeeeccCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPV-----CINYTATMPEG  137 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g  137 (139)
                      .+.||+|+++.++|++.++.     ...++.++|+|
T Consensus       230 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG  265 (335)
T 2r3s_A          230 GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEG  265 (335)
T ss_dssp             CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             CCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCc
Confidence            23499999999999886542     22245555555

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.31  E-value=8.6e-12  Score=93.17  Aligned_cols=105  Identities=9%  Similarity=0.116  Sum_probs=78.3

Q ss_pred             hhcccccChHHHHHHHHHhccc--CCCCCeEEEEcccCChhHHHHHHHcCCC----ceEEEEeCCHHHHHHHHHHHHh-h
Q psy5757           5 KIGAAIGGISAILTYLSIIQPH--LNENSKVLEIGSGSGYLTNMISELMNST----GQVIGIEHVPQLVNSSIQNILH-S   77 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~iLdiG~G~G~~~~~l~~~~~~~----~~v~~~d~~~~~~~~a~~~~~~-~   77 (139)
                      .+|..+++..+...+...+...  ..++.+|||+|||+|.++..+++.....    .+++|+|+++.+++.|+.++.. +
T Consensus       104 ~~g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g  183 (344)
T 2f8l_A          104 QVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR  183 (344)
T ss_dssp             CGGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             ccCcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC
Confidence            3577777776544444444211  2356799999999999999999887422    5899999999999999999876 3


Q ss_pred             ccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757          78 NARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        78 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                      .       +++++++|....       ...++||+|++||+++++.
T Consensus       184 ~-------~~~i~~~D~l~~-------~~~~~fD~Ii~NPPfg~~~  215 (344)
T 2f8l_A          184 Q-------KMTLLHQDGLAN-------LLVDPVDVVISDLPVGYYP  215 (344)
T ss_dssp             C-------CCEEEESCTTSC-------CCCCCEEEEEEECCCSEES
T ss_pred             C-------CceEEECCCCCc-------cccCCccEEEECCCCCCcC
Confidence            2       578899996541       1246799999999987764

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.31  E-value=1.1e-11  Score=87.84  Aligned_cols=106  Identities=20%  Similarity=0.224  Sum_probs=76.1

Q ss_pred             HHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEcc
Q psy5757          15 AILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALG   93 (139)
Q Consensus        15 ~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d   93 (139)
                      ....+...+.  +.++.+|||+|||+|..+..+++..   .+++++|+++.+++.|+++... +.     .+++++..+|
T Consensus        79 ~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~~~~~~~d  148 (248)
T 2yvl_A           79 DSFYIALKLN--LNKEKRVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKKFNL-----GKNVKFFNVD  148 (248)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHHHHTTC-----CTTEEEECSC
T ss_pred             hHHHHHHhcC--CCCCCEEEEeCCCccHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCC-----CCcEEEEEcC
Confidence            3444444443  5678899999999999999999983   3999999999999999999877 43     3689999999


Q ss_pred             chhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          94 MIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        94 ~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      +.+.+      .+.+.||+|++++.-.  ........+.++|+|.
T Consensus       149 ~~~~~------~~~~~~D~v~~~~~~~--~~~l~~~~~~L~~gG~  185 (248)
T 2yvl_A          149 FKDAE------VPEGIFHAAFVDVREP--WHYLEKVHKSLMEGAP  185 (248)
T ss_dssp             TTTSC------CCTTCBSEEEECSSCG--GGGHHHHHHHBCTTCE
T ss_pred             hhhcc------cCCCcccEEEECCcCH--HHHHHHHHHHcCCCCE
Confidence            65522      0235799999976411  1122333566777764

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.31  E-value=2.5e-12  Score=95.36  Aligned_cols=95  Identities=14%  Similarity=0.155  Sum_probs=76.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .+ .+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++.. ++     .++++++.+|+.+.       . 
T Consensus       167 ~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~~v~~~~~d~~~~-------~-  230 (334)
T 2ip2_A          167 RG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLA-----GERVSLVGGDMLQE-------V-  230 (334)
T ss_dssp             TT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHH-----TTSEEEEESCTTTC-------C-
T ss_pred             CC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCC-----CCcEEEecCCCCCC-------C-
Confidence            44 899999999999999999988 4669999999 9999999998876 54     36899999996541       1 


Q ss_pred             CCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      .+.||+|++..++|++.++.     ...++.++|+|.
T Consensus       231 ~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~  267 (334)
T 2ip2_A          231 PSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGR  267 (334)
T ss_dssp             CSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             CCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            25699999999999776653     333677788774

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.31  E-value=1.4e-12  Score=96.57  Aligned_cols=87  Identities=16%  Similarity=0.198  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++++|||+|||+|..+..+++.. +..+++++|+++.+++.|++++.. +. ..+..++++++++|+.+.++.     .
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~-~~~~~~~v~~~~~D~~~~l~~-----~  148 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLER-----T  148 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHH-----C
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhcc-ccccCCceEEEEchHHHHHHh-----c
Confidence            566899999999999999999875 345999999999999999998754 11 001136899999997663331     2


Q ss_pred             CCceeEEecCccccc
Q psy5757         107 FDRYDFLPHAPAESW  121 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~  121 (139)
                      .++||+|+++...|+
T Consensus       149 ~~~fD~Ii~d~~~~~  163 (314)
T 1uir_A          149 EERYDVVIIDLTDPV  163 (314)
T ss_dssp             CCCEEEEEEECCCCB
T ss_pred             CCCccEEEECCCCcc
Confidence            467999999988776

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.31  E-value=3e-11  Score=89.40  Aligned_cols=80  Identities=11%  Similarity=0.130  Sum_probs=67.7

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||+|..+..+++..+..++++++|+++.+++.+++++.+ +.      .+++++++|+.+ +.   .  
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~------~~v~~~~~D~~~-~~---~--  183 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLH-IG---E--  183 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGG-GG---G--
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC------CeEEEEECChhh-cc---c--
Confidence            57889999999999999999999886567999999999999999999988 54      689999999765 22   1  


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ..++||+|+++++
T Consensus       184 ~~~~fD~Il~d~P  196 (315)
T 1ixk_A          184 LNVEFDKILLDAP  196 (315)
T ss_dssp             GCCCEEEEEEECC
T ss_pred             ccccCCEEEEeCC
Confidence            2357999999765

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.31  E-value=2.9e-12  Score=94.42  Aligned_cols=104  Identities=14%  Similarity=0.079  Sum_probs=72.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++.. ..  ....++++++.+|+.+...    ...
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~~~----~~~  166 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISR--SLADPRATVRVGDGLAFVR----QTP  166 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHH----SSC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhc--ccCCCcEEEEECcHHHHHH----hcc
Confidence            567899999999999999999874 345999999999999999998742 10  0124789999999665222    113


Q ss_pred             CCceeEEecCcccccccc-------ceeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNI-------PVCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~-------p~~~~~~~~~p~g~  138 (139)
                      .++||+|+++.+.++.+.       .....++.++|+|.
T Consensus       167 ~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~  205 (304)
T 3bwc_A          167 DNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGI  205 (304)
T ss_dssp             TTCEEEEEEECC---------CCHHHHHHHHHHEEEEEE
T ss_pred             CCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcE
Confidence            568999999887665332       12333566666664

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.31  E-value=4.1e-12  Score=90.41  Aligned_cols=95  Identities=18%  Similarity=0.245  Sum_probs=68.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++.+|||+|||+|..+..+++...   +++++|+|+.+++.|+++.....      .+++++++|+.+ +.      ..
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~-~~------~~  103 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDVLE-IA------FK  103 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCGGG-CC------CC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcC------CceEEEECChhh-cc------cC
Confidence            4678999999999999999998743   99999999999999999987611      368999999654 11      12


Q ss_pred             CceeEEecCc-ccccccc--c---eeeeeeeccCCCC
Q psy5757         108 DRYDFLPHAP-AESWMNI--P---VCINYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~-~~~~~~~--p---~~~~~~~~~p~g~  138 (139)
                      ++||+|++.. .+++...  +   ....++.++|+|.
T Consensus       104 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~  140 (252)
T 1wzn_A          104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGV  140 (252)
T ss_dssp             SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeE
Confidence            5799999763 3444321  1   1223555566653

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.31  E-value=2.5e-12  Score=95.65  Aligned_cols=82  Identities=16%  Similarity=0.301  Sum_probs=65.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||+|.++..+++..  ..+|+++|++ .+++.|++++.. ++     .++++++.+|+.+ +     ..
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g--~~~v~~vD~s-~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~-~-----~~  101 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMS-SIIEMAKELVELNGF-----SDKITLLRGKLED-V-----HL  101 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESS-THHHHHHHHHHHTTC-----TTTEEEEESCTTT-S-----CC
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCC--CCEEEEEChH-HHHHHHHHHHHHcCC-----CCCEEEEECchhh-c-----cC
Confidence            3577899999999999999999874  2389999999 599999999887 54     3679999999655 2     12


Q ss_pred             cCCceeEEecCcccccc
Q psy5757         106 KFDRYDFLPHAPAESWM  122 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~  122 (139)
                      +.++||+|++++..+.+
T Consensus       102 ~~~~~D~Ivs~~~~~~l  118 (328)
T 1g6q_1          102 PFPKVDIIISEWMGYFL  118 (328)
T ss_dssp             SSSCEEEEEECCCBTTB
T ss_pred             CCCcccEEEEeCchhhc
Confidence            34689999998764443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.30  E-value=2.5e-11  Score=88.11  Aligned_cols=85  Identities=15%  Similarity=0.163  Sum_probs=68.3

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||+|..+..+++..+..++++++|+++.+++.+++++.. +.      .+++++++|+.+....+  ..
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~~~~~--~~  152 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV------LNTIIINADMRKYKDYL--LK  152 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEESCHHHHHHHH--HH
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC------CcEEEEeCChHhcchhh--hh
Confidence            57889999999999999999999875447999999999999999999988 54      68999999976522111  01


Q ss_pred             cCCceeEEecCccc
Q psy5757         106 KFDRYDFLPHAPAE  119 (139)
Q Consensus       106 ~~~~~D~vi~~~~~  119 (139)
                      ..++||+|+++++.
T Consensus       153 ~~~~fD~Vl~d~Pc  166 (274)
T 3ajd_A          153 NEIFFDKILLDAPC  166 (274)
T ss_dssp             TTCCEEEEEEEECC
T ss_pred             ccccCCEEEEcCCC
Confidence            24579999998764

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.30  E-value=5.2e-12  Score=97.08  Aligned_cols=94  Identities=14%  Similarity=0.144  Sum_probs=73.0

Q ss_pred             ccccc-ChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccC
Q psy5757           7 GAAIG-GISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTD   84 (139)
Q Consensus         7 ~~~~~-~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~   84 (139)
                      +.++. .+.....+..++.. +.++.+|||+|||+|.++..+++...   +|+++|+++.+++.|++++.. ++      
T Consensus       268 ~~F~q~n~~~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl------  337 (425)
T 2jjq_A          268 NSFFQTNSYQAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNV------  337 (425)
T ss_dssp             TSCCCSBHHHHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTC------
T ss_pred             ccccccCHHHHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCC------
Confidence            34443 33445555565544 57788999999999999999998754   999999999999999999987 54      


Q ss_pred             CcEEEEEccchhhhHHHhhhccCCceeEEecCccc
Q psy5757          85 GHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAE  119 (139)
Q Consensus        85 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~  119 (139)
                      . ++++.+|+.+.+.        ++||+|+++++.
T Consensus       338 ~-v~~~~~d~~~~~~--------~~fD~Vv~dPPr  363 (425)
T 2jjq_A          338 D-AEFEVASDREVSV--------KGFDTVIVDPPR  363 (425)
T ss_dssp             C-EEEEECCTTTCCC--------TTCSEEEECCCT
T ss_pred             c-EEEEECChHHcCc--------cCCCEEEEcCCc
Confidence            5 9999999765211        279999999984

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.30  E-value=1.1e-11  Score=94.26  Aligned_cols=85  Identities=20%  Similarity=0.207  Sum_probs=66.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++.+|||+|||+|.++..+++...  .+|+++|+++.+++.|++++..+-   +..++++++.+|+.+.+..+..  ..
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ng---l~~~~v~~~~~D~~~~~~~~~~--~~  291 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNK---LDLSKAEFVRDDVFKLLRTYRD--RG  291 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTT---CCGGGEEEEESCHHHHHHHHHH--TT
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcC---CCccceEEEECCHHHHHHHHHh--cC
Confidence            5778999999999999999999742  399999999999999999998721   1012899999998774443211  24


Q ss_pred             CceeEEecCccc
Q psy5757         108 DRYDFLPHAPAE  119 (139)
Q Consensus       108 ~~~D~vi~~~~~  119 (139)
                      .+||+|+++++.
T Consensus       292 ~~fD~Ii~dpP~  303 (396)
T 3c0k_A          292 EKFDVIVMDPPK  303 (396)
T ss_dssp             CCEEEEEECCSS
T ss_pred             CCCCEEEECCCC
Confidence            579999999874

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.29  E-value=1.1e-11  Score=90.28  Aligned_cols=104  Identities=17%  Similarity=0.146  Sum_probs=66.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeC-CHHHHHHHHHHH-----Hh-hccccccCCcEEEEEccchhhhHH
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEH-VPQLVNSSIQNI-----LH-SNARLLTDGHIKFVALGMIKRIET  100 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~-~~~~~~~a~~~~-----~~-~~~~~~~~~~i~~~~~d~~~~~~~  100 (139)
                      .++.+|||+|||+|..+..+++...  .+|+++|+ ++.+++.|+++.     .. +.. .-...+++++..+..+....
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~-~~~~~~v~~~~~~~~~~~~~  154 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSE-TVKRASPKVVPYRWGDSPDS  154 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCEEEECCTTSCTHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccc-cCCCCCeEEEEecCCCccHH
Confidence            5778999999999999999888642  38999999 899999999998     33 220 00003677776553321222


Q ss_pred             HhhhccCCceeEEecCccccccccce---eeeeeecc
Q psy5757         101 VELMMKFDRYDFLPHAPAESWMNIPV---CINYTATM  134 (139)
Q Consensus       101 ~~~~~~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~  134 (139)
                      +......++||+|++..++++..++.   ....+.++
T Consensus       155 ~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk  191 (281)
T 3bzb_A          155 LQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLA  191 (281)
T ss_dssp             HHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBC
T ss_pred             HHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhc
Confidence            21111246799999977777654432   22345555

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.29  E-value=7.9e-12  Score=95.03  Aligned_cols=84  Identities=18%  Similarity=0.340  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .+++++|||+|||+|.++..+++..  ..+|+++|+++.+++.|++++.. ++     ..+++++++|+.+.+..+..  
T Consensus       215 ~~~~~~VLDl~~G~G~~~~~la~~g--~~~v~~vD~s~~~l~~a~~n~~~n~~-----~~~v~~~~~d~~~~~~~~~~--  285 (396)
T 2as0_A          215 VQPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGV-----EDRMKFIVGSAFEEMEKLQK--  285 (396)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHHHHHHH--
T ss_pred             hhCCCeEEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCC-----CccceEEECCHHHHHHHHHh--
Confidence            3478899999999999999999873  23899999999999999999987 54     23899999997764433211  


Q ss_pred             cCCceeEEecCccc
Q psy5757         106 KFDRYDFLPHAPAE  119 (139)
Q Consensus       106 ~~~~~D~vi~~~~~  119 (139)
                      ...+||+|+++++.
T Consensus       286 ~~~~fD~Vi~dpP~  299 (396)
T 2as0_A          286 KGEKFDIVVLDPPA  299 (396)
T ss_dssp             TTCCEEEEEECCCC
T ss_pred             hCCCCCEEEECCCC
Confidence            24679999999874

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.29  E-value=1.8e-11  Score=89.25  Aligned_cols=83  Identities=16%  Similarity=0.113  Sum_probs=69.2

Q ss_pred             HhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHH
Q psy5757          22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIET  100 (139)
Q Consensus        22 ~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~  100 (139)
                      .+...++++++|||+|||+|.++..++....  ++|+++|++|.+++.++++++. ++     ..+++++.+|+.+ +. 
T Consensus       118 ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v-----~~~v~~~~~D~~~-~~-  188 (278)
T 3k6r_A          118 RMAKVAKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRD-FP-  188 (278)
T ss_dssp             HHHHHCCTTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTT-CC-
T ss_pred             HHHHhcCCCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCcHHH-hc-
Confidence            3444568899999999999999999998864  3899999999999999999998 65     4679999999765 21 


Q ss_pred             HhhhccCCceeEEecCcc
Q psy5757         101 VELMMKFDRYDFLPHAPA  118 (139)
Q Consensus       101 ~~~~~~~~~~D~vi~~~~  118 (139)
                           ..+.||.|+++++
T Consensus       189 -----~~~~~D~Vi~~~p  201 (278)
T 3k6r_A          189 -----GENIADRILMGYV  201 (278)
T ss_dssp             -----CCSCEEEEEECCC
T ss_pred             -----cccCCCEEEECCC
Confidence                 2357999999976

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.28  E-value=7.7e-13  Score=94.56  Aligned_cols=107  Identities=12%  Similarity=-0.002  Sum_probs=72.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc-cc---------c-c------------
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA-RL---------L-T------------   83 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~-~~---------~-~------------   83 (139)
                      .++.+|||+|||+|..+..++....  .+++++|+++.+++.+++++.. +.. .|         + +            
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            5667999999999999999887653  4899999999999999988755 100 00         0 0            


Q ss_pred             CCcE-EEEEccchhhhHHHhhhccCCceeEEecCcccc----ccccce---eeeeeeccCCCC
Q psy5757          84 DGHI-KFVALGMIKRIETVELMMKFDRYDFLPHAPAES----WMNIPV---CINYTATMPEGS  138 (139)
Q Consensus        84 ~~~i-~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~----~~~~p~---~~~~~~~~p~g~  138 (139)
                      ..++ +++++|+.+... . .....++||+|+++.++|    +..++.   ...++.++|+|.
T Consensus       133 ~~~v~~~~~~d~~~~~~-~-~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~  193 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQP-L-GGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGF  193 (265)
T ss_dssp             HHHEEEEEECCTTSSST-T-TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred             hhhheeEEEeeeccCCC-C-CccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcE
Confidence            0127 889999665211 0 011126799999999999    433332   333666777764

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.28  E-value=1.3e-12  Score=91.18  Aligned_cols=92  Identities=21%  Similarity=0.272  Sum_probs=68.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++.+|||+|||+|..+..+++. +  .+++++|+++.+++.++++.            .+++.+|+.+ +   ..+.+.
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~------------~~~~~~d~~~-~---~~~~~~   91 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKL------------DHVVLGDIET-M---DMPYEE   91 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTS------------SEEEESCTTT-C---CCCSCT
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC------------CcEEEcchhh-c---CCCCCC
Confidence            57789999999999999999998 3  49999999999999887653            2467777543 1   112234


Q ss_pred             CceeEEecCccccccccceee---eeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      ++||+|+++.++|++.++...   ..+.++|+|.
T Consensus        92 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~  125 (230)
T 3cc8_A           92 EQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGV  125 (230)
T ss_dssp             TCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEE
T ss_pred             CccCEEEECChhhhcCCHHHHHHHHHHHcCCCCE
Confidence            689999999999999876422   2555666653

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.28  E-value=5.7e-12  Score=90.61  Aligned_cols=86  Identities=15%  Similarity=0.314  Sum_probs=64.9

Q ss_pred             HHHHHhcccC-CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh
Q psy5757          18 TYLSIIQPHL-NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        18 ~~~~~l~~~~-~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~   96 (139)
                      .+.+.+...+ .++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|+++.          .++.+..+|+.+
T Consensus        73 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~  141 (269)
T 1p91_A           73 AIVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASSHR  141 (269)
T ss_dssp             HHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTTS
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC----------CCcEEEEcchhh
Confidence            3444444333 577899999999999999999986 3459999999999999998763          467788888543


Q ss_pred             hhHHHhhhccCCceeEEecCcccc
Q psy5757          97 RIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        97 ~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                       +     +.+.++||+|+++.+.+
T Consensus       142 -~-----~~~~~~fD~v~~~~~~~  159 (269)
T 1p91_A          142 -L-----PFSDTSMDAIIRIYAPC  159 (269)
T ss_dssp             -C-----SBCTTCEEEEEEESCCC
T ss_pred             -C-----CCCCCceeEEEEeCChh
Confidence             1     22346899999877643

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.28  E-value=3.2e-12  Score=93.91  Aligned_cols=86  Identities=16%  Similarity=0.125  Sum_probs=64.2

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++.. +.  .+..++++++++|+.+.+.     ..
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~l~-----~~  160 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSC--GFDDPRAEIVIANGAEYVR-----KF  160 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHGG-----GC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhcc--ccCCCceEEEECcHHHHHh-----hC
Confidence            456899999999999999999875 345999999999999999998754 11  0223789999999765332     12


Q ss_pred             CCceeEEecCccccc
Q psy5757         107 FDRYDFLPHAPAESW  121 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~  121 (139)
                      .++||+|++++..+|
T Consensus       161 ~~~fD~Ii~d~~~~~  175 (296)
T 1inl_A          161 KNEFDVIIIDSTDPT  175 (296)
T ss_dssp             SSCEEEEEEEC----
T ss_pred             CCCceEEEEcCCCcc
Confidence            467999999876553

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.28  E-value=7.2e-12  Score=93.55  Aligned_cols=85  Identities=20%  Similarity=0.141  Sum_probs=65.8

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.|++++.. +.  .+..++++++++|+.+.+.    ..+
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~--gl~~~rv~~~~~D~~~~l~----~~~  191 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAI--GYEDPRVNLVIGDGVAFLK----NAA  191 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG--GGGSTTEEEEESCHHHHHH----TSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhcc--ccCCCcEEEEECCHHHHHH----hcc
Confidence            566899999999999999999875 356999999999999999998764 10  0123689999999765332    112


Q ss_pred             CCceeEEecCccc
Q psy5757         107 FDRYDFLPHAPAE  119 (139)
Q Consensus       107 ~~~~D~vi~~~~~  119 (139)
                      .++||+|++++..
T Consensus       192 ~~~fDlIi~d~~~  204 (334)
T 1xj5_A          192 EGSYDAVIVDSSD  204 (334)
T ss_dssp             TTCEEEEEECCCC
T ss_pred             CCCccEEEECCCC
Confidence            4679999998763

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.28  E-value=8.9e-12  Score=90.72  Aligned_cols=104  Identities=11%  Similarity=0.191  Sum_probs=72.0

Q ss_pred             CCCeEEEEcccCCh----hHHHHHHHcCC---CceEEEEeCCHHHHHHHHHHHHh-hc-c--------ccc---c-----
Q psy5757          29 ENSKVLEIGSGSGY----LTNMISELMNS---TGQVIGIEHVPQLVNSSIQNILH-SN-A--------RLL---T-----   83 (139)
Q Consensus        29 ~~~~iLdiG~G~G~----~~~~l~~~~~~---~~~v~~~d~~~~~~~~a~~~~~~-~~-~--------~~~---~-----   83 (139)
                      +..+|||+|||||.    ++..+++..+.   ..+++|+|+|+.+++.|+++... .. +        ..+   .     
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45699999999998    55566666432   34899999999999999987521 00 0        000   0     


Q ss_pred             --------CCcEEEEEccchhhhHHHhhhcc-CCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757          84 --------DGHIKFVALGMIKRIETVELMMK-FDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus        84 --------~~~i~~~~~d~~~~~~~~~~~~~-~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                              ..+++|.+.|+.+ .     +.+ .++||+|+|..+++++.++     ....+..++|+|-
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~-~-----~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~  247 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLE-K-----QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGL  247 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTC-S-----SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEE
T ss_pred             ceeechhhcccCeEEecccCC-C-----CCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcE
Confidence                    0368899998654 1     111 3579999999999998766     3444778888874

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.28  E-value=7.5e-12  Score=94.84  Aligned_cols=80  Identities=13%  Similarity=0.252  Sum_probs=66.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ++.+|||+|||+|.++..++....   +|+++|+++.+++.|++++.. +.      .+++++++|+.+.+..+..  ..
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~n~~~n~~------~~~~~~~~d~~~~~~~~~~--~~  277 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFR---EVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLRRLEK--EG  277 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEE---EEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHHHHHH--TT
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCC------CCceEEECCHHHHHHHHHh--cC
Confidence            778999999999999999999843   999999999999999999988 54      6699999998774443211  24


Q ss_pred             CceeEEecCccc
Q psy5757         108 DRYDFLPHAPAE  119 (139)
Q Consensus       108 ~~~D~vi~~~~~  119 (139)
                      .+||+|+++++.
T Consensus       278 ~~fD~Ii~dpP~  289 (382)
T 1wxx_A          278 ERFDLVVLDPPA  289 (382)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCeeEEEECCCC
Confidence            679999999874

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.27  E-value=7.4e-13  Score=101.00  Aligned_cols=93  Identities=14%  Similarity=0.135  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEE--EEEccchhhhHHHhhhc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIK--FVALGMIKRIETVELMM  105 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~--~~~~d~~~~~~~~~~~~  105 (139)
                      .++.+|||+|||+|.++..+++...   +++++|+|+.+++.|+++- .        ....  +...+    ...+..  
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~-~--------~~~~~~~~~~~----~~~l~~--  167 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKG-I--------RVRTDFFEKAT----ADDVRR--  167 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTT-C--------CEECSCCSHHH----HHHHHH--
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcC-C--------Ccceeeechhh----Hhhccc--
Confidence            5778999999999999999998754   9999999999999988761 1        1111  11122    222222  


Q ss_pred             cCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      +.++||+|+++.++||+.+|...   .++.++|+|.
T Consensus       168 ~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~  203 (416)
T 4e2x_A          168 TEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGV  203 (416)
T ss_dssp             HHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEE
T ss_pred             CCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeE
Confidence            34689999999999999987543   3677777774

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.27  E-value=3.4e-12  Score=85.41  Aligned_cols=83  Identities=11%  Similarity=0.219  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh--HHHhhh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI--ETVELM  104 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~  104 (139)
                      ..++.+|||+|||+|..+..+++..++..+++++|+++ ++.               ..+++++.+|+.+.-  ..+...
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~---------------~~~~~~~~~d~~~~~~~~~~~~~   83 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP---------------IVGVDFLQGDFRDELVMKALLER   83 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC---------------CTTEEEEESCTTSHHHHHHHHHH
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc---------------cCcEEEEEcccccchhhhhhhcc
Confidence            57788999999999999999999965556999999997 532               257888999976521  111111


Q ss_pred             ccCCceeEEecCccccccccc
Q psy5757         105 MKFDRYDFLPHAPAESWMNIP  125 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~~p  125 (139)
                      .+.++||+|+++.++|+...+
T Consensus        84 ~~~~~~D~i~~~~~~~~~~~~  104 (180)
T 1ej0_A           84 VGDSKVQVVMSDMAPNMSGTP  104 (180)
T ss_dssp             HTTCCEEEEEECCCCCCCSCH
T ss_pred             CCCCceeEEEECCCccccCCC
Confidence            235689999999998876543

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.27  E-value=8e-12  Score=93.25  Aligned_cols=76  Identities=12%  Similarity=0.076  Sum_probs=63.6

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .+.++.+|||+|||+|.++.. ++.   ..+|+++|+|+.+++.|++++.. ++     ..+++++++|+.+.+      
T Consensus       192 ~~~~~~~VLDlg~G~G~~~l~-a~~---~~~V~~vD~s~~ai~~a~~n~~~n~l-----~~~v~~~~~D~~~~~------  256 (336)
T 2yx1_A          192 KVSLNDVVVDMFAGVGPFSIA-CKN---AKKIYAIDINPHAIELLKKNIKLNKL-----EHKIIPILSDVREVD------  256 (336)
T ss_dssp             HCCTTCEEEETTCTTSHHHHH-TTT---SSEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEESCGGGCC------
T ss_pred             hcCCCCEEEEccCccCHHHHh-ccC---CCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECChHHhc------
Confidence            456889999999999999999 773   34999999999999999999988 44     358999999965521      


Q ss_pred             ccCCceeEEecCccc
Q psy5757         105 MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~  119 (139)
                         ++||+|+++++.
T Consensus       257 ---~~fD~Vi~dpP~  268 (336)
T 2yx1_A          257 ---VKGNRVIMNLPK  268 (336)
T ss_dssp             ---CCEEEEEECCTT
T ss_pred             ---CCCcEEEECCcH
Confidence               679999999763

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.27  E-value=6.1e-12  Score=98.02  Aligned_cols=96  Identities=14%  Similarity=0.173  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|.++..+++..  ..+|+++|+++ +++.|++++.. ++     .++++++.+|+.+ +.      .
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~--~~~V~gvD~s~-~l~~A~~~~~~~gl-----~~~v~~~~~d~~~-~~------~  221 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAG--ARKIYAVEAST-MAQHAEVLVKSNNL-----TDRIVVIPGKVEE-VS------L  221 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTT--CSEEEEEECHH-HHHHHHHHHHHTTC-----TTTEEEEESCTTT-CC------C
T ss_pred             cCCCEEEEecCcccHHHHHHHHcC--CCEEEEEEcHH-HHHHHHHHHHHcCC-----CCcEEEEECchhh-Cc------c
Confidence            567899999999999999998853  34999999998 99999999887 54     3689999999654 11      1


Q ss_pred             CCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                      .++||+|++++.+++...+     .....+.++|+|.
T Consensus       222 ~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~  258 (480)
T 3b3j_A          222 PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGN  258 (480)
T ss_dssp             SSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEE
T ss_pred             CCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCE
Confidence            2579999999885544322     1112456666663

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.27  E-value=5.7e-12  Score=90.55  Aligned_cols=98  Identities=13%  Similarity=0.122  Sum_probs=75.0

Q ss_pred             hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757           5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT   83 (139)
Q Consensus         5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~   83 (139)
                      .+|+ ++..+.+..++++.+.  ..++.+|||+|||+|.++..+++..  ..+++++|+|+.+++.++++ ..       
T Consensus         8 ~~GQnfl~d~~i~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~~v~avEid~~~~~~~~~~-~~-------   75 (249)
T 3ftd_A            8 SFGQHLLVSEGVLKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQHP--LKKLYVIELDREMVENLKSI-GD-------   75 (249)
T ss_dssp             CCCSSCEECHHHHHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTSC--CSEEEEECCCHHHHHHHTTS-CC-------
T ss_pred             cccccccCCHHHHHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHcC--CCeEEEEECCHHHHHHHHhc-cC-------
Confidence            4677 5567778888888886  5678899999999999999999983  23999999999999999877 32       


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                       .+++++++|+.+ +.   .....+. ..|++|++++
T Consensus        76 -~~v~~i~~D~~~-~~---~~~~~~~-~~vv~NlPy~  106 (249)
T 3ftd_A           76 -ERLEVINEDASK-FP---FCSLGKE-LKVVGNLPYN  106 (249)
T ss_dssp             -TTEEEECSCTTT-CC---GGGSCSS-EEEEEECCTT
T ss_pred             -CCeEEEEcchhh-CC---hhHccCC-cEEEEECchh
Confidence             689999999765 21   1111123 3888888754

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.27  E-value=4e-12  Score=93.78  Aligned_cols=86  Identities=15%  Similarity=0.163  Sum_probs=65.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++.. ..  .+..++++++++|+.+.++     ..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~--~~~~~rv~v~~~Da~~~l~-----~~  165 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAI--GYSSSKLTLHVGDGFEFMK-----QN  165 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHH-----TC
T ss_pred             CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhc--ccCCCcEEEEECcHHHHHh-----hC
Confidence            566899999999999999999875 345999999999999999998754 10  0224789999999765333     13


Q ss_pred             CCceeEEecCccccc
Q psy5757         107 FDRYDFLPHAPAESW  121 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~  121 (139)
                      .++||+|+++...++
T Consensus       166 ~~~fD~Ii~d~~~~~  180 (304)
T 2o07_A          166 QDAFDVIITDSSDPM  180 (304)
T ss_dssp             SSCEEEEEEECC---
T ss_pred             CCCceEEEECCCCCC
Confidence            467999999887654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.26  E-value=4.6e-12  Score=92.40  Aligned_cols=85  Identities=18%  Similarity=0.168  Sum_probs=65.8

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccc-------cCCcEEEEEccchhhhH
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLL-------TDGHIKFVALGMIKRIE   99 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~-------~~~~i~~~~~d~~~~~~   99 (139)
                      ..++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++ ... ..+       ..++++++.+|+.+.+.
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~-~~l~~~~~~~~~~~v~~~~~D~~~~l~  148 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KID-NGLLEAMLNGKHEKAKLTIGDGFEFIK  148 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTT-TTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhc-cccccccccCCCCcEEEEECchHHHhc
Confidence            356689999999999999999998 3 459999999999999999987 300 001       24789999999765333


Q ss_pred             HHhhhccCCceeEEecCccccc
Q psy5757         100 TVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus       100 ~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                         .   .++||+|+++++.++
T Consensus       149 ---~---~~~fD~Ii~d~~~~~  164 (281)
T 1mjf_A          149 ---N---NRGFDVIIADSTDPV  164 (281)
T ss_dssp             ---H---CCCEEEEEEECCCCC
T ss_pred             ---c---cCCeeEEEECCCCCC
Confidence               1   467999999987554

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.26  E-value=5.3e-11  Score=89.80  Aligned_cols=95  Identities=13%  Similarity=0.164  Sum_probs=70.4

Q ss_pred             HHHHHHHhcccCC-CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEcc
Q psy5757          16 ILTYLSIIQPHLN-ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALG   93 (139)
Q Consensus        16 ~~~~~~~l~~~~~-~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d   93 (139)
                      ...+..++.+... .+.+|||+|||+|.++..+++...   +|+++|+++.+++.|++++.. ++      .+++++.+|
T Consensus       199 ~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~~---~V~gvd~~~~ai~~a~~n~~~ng~------~~v~~~~~d  269 (369)
T 3bt7_A          199 NIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFD---RVLATEIAKPSVAAAQYNIAANHI------DNVQIIRMA  269 (369)
T ss_dssp             HHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGSS---EEEEECCCHHHHHHHHHHHHHTTC------CSEEEECCC
T ss_pred             HHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCC------CceEEEECC
Confidence            3444444433332 357899999999999999998654   999999999999999999987 54      689999999


Q ss_pred             chhhhHHHhhhc----------cCCceeEEecCccc
Q psy5757          94 MIKRIETVELMM----------KFDRYDFLPHAPAE  119 (139)
Q Consensus        94 ~~~~~~~~~~~~----------~~~~~D~vi~~~~~  119 (139)
                      +.+.+..+....          ...+||+|+.+|+.
T Consensus       270 ~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr  305 (369)
T 3bt7_A          270 AEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPR  305 (369)
T ss_dssp             SHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCT
T ss_pred             HHHHHHHHhhccccccccccccccCCCCEEEECcCc
Confidence            876443321100          01379999999874

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.25  E-value=1.1e-11  Score=89.44  Aligned_cols=86  Identities=13%  Similarity=0.102  Sum_probs=65.5

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCH-------HHHHHHHHHHHh-hccccccCCcEEEEEccchhhh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVP-------QLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRI   98 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~-------~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~   98 (139)
                      ..++.+|||+|||+|..+..+++...   +|+++|+++       .+++.|+++... +.     ..+++++++|+.+.+
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~g~---~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~-----~~ri~~~~~d~~~~l  152 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASLGL---TVTAFEQHPAVACLLSDGIRRALLNPETQDT-----AARINLHFGNAAEQM  152 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHTTC---CEEEEECCHHHHHHHHHHHHHHHHSHHHHHH-----HTTEEEEESCHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHhCC---EEEEEECChhhhHHHHHHHHHHHhHHHhhCC-----ccCeEEEECCHHHHH
Confidence            34668999999999999999999753   899999999       999999888776 44     235999999976643


Q ss_pred             HHHhhhccCCceeEEecCcccccc
Q psy5757          99 ETVELMMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus        99 ~~~~~~~~~~~~D~vi~~~~~~~~  122 (139)
                      +.+...  .++||+|+++|.+++.
T Consensus       153 ~~~~~~--~~~fD~V~~dP~~~~~  174 (258)
T 2r6z_A          153 PALVKT--QGKPDIVYLDPMYPER  174 (258)
T ss_dssp             HHHHHH--HCCCSEEEECCCC---
T ss_pred             Hhhhcc--CCCccEEEECCCCCCc
Confidence            322110  1579999999988763

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.24  E-value=5.9e-11  Score=91.57  Aligned_cols=106  Identities=13%  Similarity=0.123  Sum_probs=82.0

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcC------------CCceEEEEeCCHHHHHHHHH
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMN------------STGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~------------~~~~v~~~d~~~~~~~~a~~   72 (139)
                      +.|+.+++..++..+.+.+.  ..++.+|+|+|||+|.+...+++...            ...+++|+|+++.+++.|+.
T Consensus       149 ~~G~fyTP~~v~~~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~  226 (445)
T 2okc_A          149 GAGQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASM  226 (445)
T ss_dssp             CCGGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHH
T ss_pred             cCCcccCcHHHHHHHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHH
Confidence            35778888888888888886  36678999999999999999988641            12389999999999999999


Q ss_pred             HHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757          73 NILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        73 ~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                      ++.. +.    ...+.++.++|.....       ...+||+|++||+++...
T Consensus       227 nl~l~g~----~~~~~~i~~gD~l~~~-------~~~~fD~Iv~NPPf~~~~  267 (445)
T 2okc_A          227 NLYLHGI----GTDRSPIVCEDSLEKE-------PSTLVDVILANPPFGTRP  267 (445)
T ss_dssp             HHHHTTC----CSSCCSEEECCTTTSC-------CSSCEEEEEECCCSSCCC
T ss_pred             HHHHhCC----CcCCCCEeeCCCCCCc-------ccCCcCEEEECCCCCCcc
Confidence            9876 43    1116778999965411       124799999999987543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.23  E-value=7.3e-12  Score=93.03  Aligned_cols=84  Identities=18%  Similarity=0.186  Sum_probs=65.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.|++++.. ..  .+..++++++++|+.+.++.     .
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~--~~~~~~v~~~~~D~~~~l~~-----~  186 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISC--GYEDKRVNVFIEDASKFLEN-----V  186 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSG--GGGSTTEEEEESCHHHHHHH-----C
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhcc--ccCCCcEEEEEccHHHHHhh-----c
Confidence            466899999999999999999875 345999999999999999998764 10  02236899999997653321     2


Q ss_pred             CCceeEEecCccc
Q psy5757         107 FDRYDFLPHAPAE  119 (139)
Q Consensus       107 ~~~~D~vi~~~~~  119 (139)
                      .++||+|++++..
T Consensus       187 ~~~fDvIi~d~~~  199 (321)
T 2pt6_A          187 TNTYDVIIVDSSD  199 (321)
T ss_dssp             CSCEEEEEEECCC
T ss_pred             CCCceEEEECCcC
Confidence            4679999998753

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.23  E-value=6.7e-12  Score=92.98  Aligned_cols=87  Identities=11%  Similarity=0.143  Sum_probs=65.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++.... ..+..++++++++|+.+.+..     ..
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~-~~~~~~rv~~~~~D~~~~l~~-----~~  179 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMS-CGFSHPKLDLFCGDGFEFLKN-----HK  179 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTS-GGGGCTTEEEECSCHHHHHHH-----CT
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhc-cccCCCCEEEEEChHHHHHHh-----cC
Confidence            456899999999999999999875 35699999999999999999876410 001236899999997663331     34


Q ss_pred             CceeEEecCccccc
Q psy5757         108 DRYDFLPHAPAESW  121 (139)
Q Consensus       108 ~~~D~vi~~~~~~~  121 (139)
                      ++||+|+++...++
T Consensus       180 ~~fD~Ii~d~~~~~  193 (314)
T 2b2c_A          180 NEFDVIITDSSDPV  193 (314)
T ss_dssp             TCEEEEEECCC---
T ss_pred             CCceEEEEcCCCCC
Confidence            67999999886443

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.22  E-value=1.4e-12  Score=93.19  Aligned_cols=98  Identities=20%  Similarity=0.316  Sum_probs=75.5

Q ss_pred             hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757           5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT   83 (139)
Q Consensus         5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~   83 (139)
                      .+|+ ++..+.....+++.+.  ..++.+|||+|||+|.++..+++...   +++++|+|+.+++.++++...       
T Consensus         6 ~~gq~fl~~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~~-------   73 (245)
T 1yub_A            6 KYSQNFLTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKL-------   73 (245)
T ss_dssp             CSCCCBCCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTT-------
T ss_pred             ccCCCCCCCHHHHHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhcc-------
Confidence            4677 5566777888888875  56788999999999999999999863   999999999999888776643       


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      .++++++++|+.+ +.   .. ..++| .|++|++++
T Consensus        74 ~~~v~~~~~D~~~-~~---~~-~~~~f-~vv~n~Py~  104 (245)
T 1yub_A           74 NTRVTLIHQDILQ-FQ---FP-NKQRY-KIVGNIPYH  104 (245)
T ss_dssp             CSEEEECCSCCTT-TT---CC-CSSEE-EEEEECCSS
T ss_pred             CCceEEEECChhh-cC---cc-cCCCc-EEEEeCCcc
Confidence            3689999999765 21   11 12468 788887654

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.22  E-value=1e-11  Score=90.71  Aligned_cols=86  Identities=17%  Similarity=0.176  Sum_probs=66.8

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++++|||+|||+|..+..+++.. +..+++++|+++.+++.|++++.. +.  .+..++++++++|+.+.+..     .
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~l~~-----~  148 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISC--GYEDKRVNVFIEDASKFLEN-----V  148 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSG--GGGSTTEEEEESCHHHHHHH-----C
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhcc--ccCCCcEEEEECChHHHHHh-----C
Confidence            466899999999999999999875 355999999999999999998764 10  01247899999997663331     2


Q ss_pred             CCceeEEecCccccc
Q psy5757         107 FDRYDFLPHAPAESW  121 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~  121 (139)
                      .++||+|+++...++
T Consensus       149 ~~~fD~Ii~d~~~~~  163 (283)
T 2i7c_A          149 TNTYDVIIVDSSDPI  163 (283)
T ss_dssp             CSCEEEEEEECCCTT
T ss_pred             CCCceEEEEcCCCCC
Confidence            467999999876544

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.21  E-value=2.6e-11  Score=92.31  Aligned_cols=95  Identities=14%  Similarity=0.192  Sum_probs=72.3

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccC
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTD   84 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~   84 (139)
                      ..|+.++++..+..+.+.+.  ..++.+|||+|||+|.++..++++..+..+++|+|+++.+++.|              
T Consensus        17 ~~g~~~TP~~l~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------   80 (421)
T 2ih2_A           17 SLGRVETPPEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------   80 (421)
T ss_dssp             ----CCCCHHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------
T ss_pred             cCceEeCCHHHHHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------------
Confidence            45778888888888888885  24567999999999999999999864456999999999877544              


Q ss_pred             CcEEEEEccchhhhHHHhhhccCCceeEEecCcccccc
Q psy5757          85 GHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus        85 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~  122 (139)
                      .+++++++|+.+. .      ..++||+|++||++...
T Consensus        81 ~~~~~~~~D~~~~-~------~~~~fD~Ii~NPPy~~~  111 (421)
T 2ih2_A           81 PWAEGILADFLLW-E------PGEAFDLILGNPPYGIV  111 (421)
T ss_dssp             TTEEEEESCGGGC-C------CSSCEEEEEECCCCCCB
T ss_pred             CCCcEEeCChhhc-C------ccCCCCEEEECcCccCc
Confidence            3678899996551 1      23579999999997544

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.21  E-value=1.9e-11  Score=84.10  Aligned_cols=80  Identities=19%  Similarity=0.243  Sum_probs=58.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh-------
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI-------   98 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------   98 (139)
                      ++++.+|||+|||+|.++..+++..++ .++++++|+++..         .       .++++++++|+.+..       
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~-------~~~v~~~~~d~~~~~~~~~~~~   83 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P-------IPNVYFIQGEIGKDNMNNIKNI   83 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C-------CTTCEEEECCTTTTSSCCC---
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C-------CCCceEEEccccchhhhhhccc
Confidence            577889999999999999999998743 5799999999721         1       257888888876521       


Q ss_pred             ------------HHHhhhccCCceeEEecCcccccc
Q psy5757          99 ------------ETVELMMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus        99 ------------~~~~~~~~~~~~D~vi~~~~~~~~  122 (139)
                                  ..+....+..+||+|+++.++|+.
T Consensus        84 ~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~  119 (201)
T 2plw_A           84 NYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCI  119 (201)
T ss_dssp             --------CHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred             cccccccchhhHHHHHhhcCCCcccEEEeCCCcCCC
Confidence                        011111234679999999988874

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.21  E-value=4.7e-11  Score=90.37  Aligned_cols=76  Identities=14%  Similarity=0.225  Sum_probs=62.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .+++.|||+|||+|.++..+++.+..  +|+++|.++ +++.|++.++. ++     .++++++.+++.+ +.   .   
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~-~~~~a~~~~~~n~~-----~~~i~~i~~~~~~-~~---l---  146 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGAR--RVYAVEASA-IWQQAREVVRFNGL-----EDRVHVLPGPVET-VE---L---  146 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCS--EEEEEECST-THHHHHHHHHHTTC-----TTTEEEEESCTTT-CC---C---
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCC--EEEEEeChH-HHHHHHHHHHHcCC-----CceEEEEeeeeee-ec---C---
Confidence            57899999999999999999887753  899999995 88999998887 65     5789999999655 21   1   


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      .+++|+|++.+.
T Consensus       147 pe~~DvivsE~~  158 (376)
T 4hc4_A          147 PEQVDAIVSEWM  158 (376)
T ss_dssp             SSCEEEEECCCC
T ss_pred             CccccEEEeecc
Confidence            367999999665

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.20  E-value=8.1e-11  Score=89.93  Aligned_cols=84  Identities=18%  Similarity=0.154  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +.++.+|||+|||+|..+..+++...   +|+++|+|+.+++.|++++....   .+..+++++++|+.+.+...    .
T Consensus        91 l~~g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~---~gl~~i~~i~~Da~~~L~~~----~  160 (410)
T 3ll7_A           91 IREGTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLL---NEGKDVNILTGDFKEYLPLI----K  160 (410)
T ss_dssp             SCTTCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHS---CTTCEEEEEESCGGGSHHHH----H
T ss_pred             cCCCCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhc---cCCCcEEEEECcHHHhhhhc----c
Confidence            44589999999999999999998764   99999999999999999997620   02368999999987744321    1


Q ss_pred             CCceeEEecCcccc
Q psy5757         107 FDRYDFLPHAPAES  120 (139)
Q Consensus       107 ~~~~D~vi~~~~~~  120 (139)
                      ..+||+|+++|+..
T Consensus       161 ~~~fDvV~lDPPrr  174 (410)
T 3ll7_A          161 TFHPDYIYVDPARR  174 (410)
T ss_dssp             HHCCSEEEECCEEC
T ss_pred             CCCceEEEECCCCc
Confidence            24699999999854

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.20  E-value=1.2e-11  Score=92.42  Aligned_cols=94  Identities=12%  Similarity=0.050  Sum_probs=71.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.+|||+|||+|..+..+++.. +..+++++|++ .++.  +++... +.     .++++++.+|+.+       ..
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~--~~~~~~~~~-----~~~v~~~~~d~~~-------~~  245 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDRA-EVVA--RHRLDAPDV-----AGRWKVVEGDFLR-------EV  245 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEECH-HHHT--TCCCCCGGG-----TTSEEEEECCTTT-------CC
T ss_pred             ccCCceEEEECCccCHHHHHHHHHC-CCCEEEEecCH-HHhh--cccccccCC-----CCCeEEEecCCCC-------CC
Confidence            4567899999999999999999998 46789999994 4444  333322 22     3679999999642       12


Q ss_pred             cCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      +  +||+|++..++|++.++.     ...++.++|+|.
T Consensus       246 p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~  281 (348)
T 3lst_A          246 P--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGR  281 (348)
T ss_dssp             C--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCE
T ss_pred             C--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            2  799999999999998872     334788888885

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.20  E-value=1.8e-10  Score=89.77  Aligned_cols=87  Identities=16%  Similarity=0.193  Sum_probs=69.9

Q ss_pred             HHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhH
Q psy5757          21 SIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIE   99 (139)
Q Consensus        21 ~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~   99 (139)
                      ..+.....++.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++++.+ +.      .+++++++|+.+ +.
T Consensus       109 ~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~------~nv~~~~~D~~~-~~  181 (479)
T 2frx_A          109 AALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI------SNVALTHFDGRV-FG  181 (479)
T ss_dssp             HHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC------CSEEEECCCSTT-HH
T ss_pred             HHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCCHHH-hh
Confidence            44442223889999999999999999999986567999999999999999999988 54      689999999765 22


Q ss_pred             HHhhhccCCceeEEecCcc
Q psy5757         100 TVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus       100 ~~~~~~~~~~~D~vi~~~~  118 (139)
                      .   . ..++||+|+++++
T Consensus       182 ~---~-~~~~fD~Il~D~P  196 (479)
T 2frx_A          182 A---A-VPEMFDAILLDAP  196 (479)
T ss_dssp             H---H-STTCEEEEEEECC
T ss_pred             h---h-ccccCCEEEECCC
Confidence            1   1 2357999999765

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.20  E-value=1.3e-10  Score=85.99  Aligned_cols=83  Identities=10%  Similarity=0.201  Sum_probs=67.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .+++.+|||+|||+|+.+..+++.....++|+++|+++.+++.+++++++ +.      .+++++++|+.+....   ..
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~------~~v~~~~~D~~~~~~~---~~  170 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAVSPS---DP  170 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGSCTT---CG
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCChHhcCcc---cc
Confidence            57889999999999999999999876567999999999999999999988 54      7899999997652110   00


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ...+||.|+++++
T Consensus       171 ~~~~fD~Vl~D~P  183 (309)
T 2b9e_A          171 RYHEVHYILLDPS  183 (309)
T ss_dssp             GGTTEEEEEECCC
T ss_pred             ccCCCCEEEEcCC
Confidence            1246999998776

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.20  E-value=1.3e-10  Score=90.04  Aligned_cols=87  Identities=13%  Similarity=0.103  Sum_probs=71.1

Q ss_pred             HHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh
Q psy5757          19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        19 ~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      ....+.  ..++.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++++.+ +.      .++.++++|+.+.
T Consensus        97 ~~~~L~--~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~------~nv~v~~~Da~~l  168 (456)
T 3m4x_A           97 VGTAAA--AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV------SNAIVTNHAPAEL  168 (456)
T ss_dssp             HHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC------SSEEEECCCHHHH
T ss_pred             HHHHcC--CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHh
Confidence            344443  57889999999999999999999886667999999999999999999998 65      7899999996652


Q ss_pred             hHHHhhhccCCceeEEecCcc
Q psy5757          98 IETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      ...     ..++||+|+++++
T Consensus       169 ~~~-----~~~~FD~Il~DaP  184 (456)
T 3m4x_A          169 VPH-----FSGFFDRIVVDAP  184 (456)
T ss_dssp             HHH-----HTTCEEEEEEECC
T ss_pred             hhh-----ccccCCEEEECCC
Confidence            111     1367999999876

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.19  E-value=1.1e-11  Score=90.90  Aligned_cols=96  Identities=10%  Similarity=0.068  Sum_probs=69.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEE-EccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFV-ALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~-~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||||.++..+++...  .+|+|+|+++.|++++.+.-          +++... ..|+.. +..  ...+
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~----------~rv~~~~~~ni~~-l~~--~~l~  148 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQD----------DRVRSMEQYNFRY-AEP--VDFT  148 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTC----------TTEEEECSCCGGG-CCG--GGCT
T ss_pred             ccccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhC----------cccceecccCcee-cch--hhCC
Confidence            3678999999999999999988742  39999999999998864431          333222 234222 110  1112


Q ss_pred             CCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      ..+||+++++.+||++.......++.++|+|.
T Consensus       149 ~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~  180 (291)
T 3hp7_A          149 EGLPSFASIDVSFISLNLILPALAKILVDGGQ  180 (291)
T ss_dssp             TCCCSEEEECCSSSCGGGTHHHHHHHSCTTCE
T ss_pred             CCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCE
Confidence            34599999999999988878888888999885

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.19  E-value=1.2e-10  Score=88.39  Aligned_cols=82  Identities=15%  Similarity=0.149  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcC-------------------------------------CCceEEEEeCCHHHHHH
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMN-------------------------------------STGQVIGIEHVPQLVNS   69 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~-------------------------------------~~~~v~~~d~~~~~~~~   69 (139)
                      ..++.++||++||+|.++..++....                                     +..+++|+|+++.+++.
T Consensus       193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~  272 (385)
T 3ldu_A          193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI  272 (385)
T ss_dssp             CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence            46778999999999999999988752                                     12479999999999999


Q ss_pred             HHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          70 SIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        70 a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      |++++.. ++     ..++++.++|+.+ +.      ..++||+|++||+++
T Consensus       273 Ar~Na~~~gl-----~~~i~~~~~D~~~-l~------~~~~~D~Iv~NPPyg  312 (385)
T 3ldu_A          273 ARENAEIAGV-----DEYIEFNVGDATQ-FK------SEDEFGFIITNPPYG  312 (385)
T ss_dssp             HHHHHHHHTC-----GGGEEEEECCGGG-CC------CSCBSCEEEECCCCC
T ss_pred             HHHHHHHcCC-----CCceEEEECChhh-cC------cCCCCcEEEECCCCc
Confidence            9999988 65     3579999999765 21      235799999999975

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.18  E-value=1.3e-10  Score=91.83  Aligned_cols=106  Identities=13%  Similarity=0.087  Sum_probs=80.5

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCC-----------------CceEEEEeCCHHHH
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNS-----------------TGQVIGIEHVPQLV   67 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~-----------------~~~v~~~d~~~~~~   67 (139)
                      +.|+.+++..++..+.+.+.  ..++.+|+|.+||+|.+...+++....                 ..+++|+|+++.++
T Consensus       147 ~~G~fyTP~~iv~~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~  224 (541)
T 2ar0_A          147 GAGQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR  224 (541)
T ss_dssp             ---CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred             cCCeeeCCHHHHHHHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHH
Confidence            35778888888888888886  367789999999999999998876521                 13799999999999


Q ss_pred             HHHHHHHHh-hccccccCCc-----EEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757          68 NSSIQNILH-SNARLLTDGH-----IKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        68 ~~a~~~~~~-~~~~~~~~~~-----i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                      +.|+.++.. +.      .+     .++.++|.+....     ....+||+|++||+++...
T Consensus       225 ~lA~~nl~l~gi------~~~~~~~~~I~~gDtL~~~~-----~~~~~fD~Vv~NPPf~~~~  275 (541)
T 2ar0_A          225 RLALMNCLLHDI------EGNLDHGGAIRLGNTLGSDG-----ENLPKAHIVATNPPFGSAA  275 (541)
T ss_dssp             HHHHHHHHTTTC------CCBGGGTBSEEESCTTSHHH-----HTSCCEEEEEECCCCTTCS
T ss_pred             HHHHHHHHHhCC------CccccccCCeEeCCCccccc-----ccccCCeEEEECCCccccc
Confidence            999999876 44      33     7788999654211     1246799999999977543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.18  E-value=1.3e-11  Score=93.90  Aligned_cols=97  Identities=18%  Similarity=0.250  Sum_probs=68.3

Q ss_pred             CCCCCeEEEEccc------CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHH
Q psy5757          27 LNENSKVLEIGSG------SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIET  100 (139)
Q Consensus        27 ~~~~~~iLdiG~G------~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  100 (139)
                      ..++.+|||||||      +|..+..+++...+.++++++|+++.+.       ..       .++++++++|+.+ ++.
T Consensus       214 ~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~~-------~~rI~fv~GDa~d-lpf  278 (419)
T 3sso_A          214 RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------VD-------ELRIRTIQGDQND-AEF  278 (419)
T ss_dssp             TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------GC-------BTTEEEEECCTTC-HHH
T ss_pred             cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------hc-------CCCcEEEEecccc-cch
Confidence            3567899999999      7888888888765678999999999862       11       3789999999766 221


Q ss_pred             H-hhhccCCceeEEecCccccccccc---eeeeeeeccCCCCC
Q psy5757         101 V-ELMMKFDRYDFLPHAPAESWMNIP---VCINYTATMPEGSY  139 (139)
Q Consensus       101 ~-~~~~~~~~~D~vi~~~~~~~~~~p---~~~~~~~~~p~g~~  139 (139)
                      . ......++||+|+++.+ |+..++   ....++.++|+|.|
T Consensus       279 ~~~l~~~d~sFDlVisdgs-H~~~d~~~aL~el~rvLKPGGvl  320 (419)
T 3sso_A          279 LDRIARRYGPFDIVIDDGS-HINAHVRTSFAALFPHVRPGGLY  320 (419)
T ss_dssp             HHHHHHHHCCEEEEEECSC-CCHHHHHHHHHHHGGGEEEEEEE
T ss_pred             hhhhhcccCCccEEEECCc-ccchhHHHHHHHHHHhcCCCeEE
Confidence            1 00011367999999865 554443   34447888888753

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.17  E-value=1.7e-10  Score=89.50  Aligned_cols=86  Identities=10%  Similarity=0.101  Sum_probs=69.8

Q ss_pred             HHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh
Q psy5757          19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        19 ~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      +...+.  ..++.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++++.+ +.      . ++++++|+.+ 
T Consensus        93 ~a~~L~--~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~------~-v~~~~~Da~~-  162 (464)
T 3m6w_A           93 VGVLLD--PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA------P-LAVTQAPPRA-  162 (464)
T ss_dssp             HHHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC------C-CEEECSCHHH-
T ss_pred             HHHhcC--cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------e-EEEEECCHHH-
Confidence            344443  57889999999999999999999986667999999999999999999998 55      5 8899999665 


Q ss_pred             hHHHhhhccCCceeEEecCcc
Q psy5757          98 IETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      +..    ...++||+|+++++
T Consensus       163 l~~----~~~~~FD~Il~D~P  179 (464)
T 3m6w_A          163 LAE----AFGTYFHRVLLDAP  179 (464)
T ss_dssp             HHH----HHCSCEEEEEEECC
T ss_pred             hhh----hccccCCEEEECCC
Confidence            221    11467999998776

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.17  E-value=3e-10  Score=92.15  Aligned_cols=81  Identities=10%  Similarity=0.087  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++++|||+|||+|.++..++....  .+|+++|+|+.+++.|++++.. ++    ..++++++++|+.+.+..     .
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl----~~~~v~~i~~D~~~~l~~-----~  606 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGL----TGRAHRLIQADCLAWLRE-----A  606 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTC----CSTTEEEEESCHHHHHHH-----C
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCC----CccceEEEecCHHHHHHh-----c
Confidence            4688999999999999999998653  2799999999999999999988 54    114899999998764432     2


Q ss_pred             CCceeEEecCccc
Q psy5757         107 FDRYDFLPHAPAE  119 (139)
Q Consensus       107 ~~~~D~vi~~~~~  119 (139)
                      .++||+|+++++.
T Consensus       607 ~~~fD~Ii~DPP~  619 (703)
T 3v97_A          607 NEQFDLIFIDPPT  619 (703)
T ss_dssp             CCCEEEEEECCCS
T ss_pred             CCCccEEEECCcc
Confidence            4679999999973

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.17  E-value=2.9e-11  Score=84.55  Aligned_cols=93  Identities=17%  Similarity=0.245  Sum_probs=66.8

Q ss_pred             HHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh
Q psy5757          19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI   98 (139)
Q Consensus        19 ~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~   98 (139)
                      .+..+.. ..++.+|||+|||+|..+..+++.       +++|+++.+++.++++            +++++.+|+.+ +
T Consensus        38 ~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~------------~~~~~~~d~~~-~   96 (219)
T 1vlm_A           38 ELQAVKC-LLPEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR------------GVFVLKGTAEN-L   96 (219)
T ss_dssp             HHHHHHH-HCCSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT------------TCEEEECBTTB-C
T ss_pred             HHHHHHH-hCCCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc------------CCEEEEccccc-C
Confidence            3344443 234889999999999998877543       9999999999988775            35678888543 1


Q ss_pred             HHHhhhccCCceeEEecCccccccccceee---eeeeccCCC
Q psy5757          99 ETVELMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEG  137 (139)
Q Consensus        99 ~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g  137 (139)
                           +.+.++||+|+++.++|++.++...   ..+.++|+|
T Consensus        97 -----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG  133 (219)
T 1vlm_A           97 -----PLKDESFDFALMVTTICFVDDPERALKEAYRILKKGG  133 (219)
T ss_dssp             -----CSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEE
T ss_pred             -----CCCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCc
Confidence                 1234679999999999999876422   245555655

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.16  E-value=1.9e-10  Score=87.64  Aligned_cols=83  Identities=17%  Similarity=0.193  Sum_probs=67.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCC-------------------------------------CceEEEEeCCHHHHHH
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNS-------------------------------------TGQVIGIEHVPQLVNS   69 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~-------------------------------------~~~v~~~d~~~~~~~~   69 (139)
                      ..++..+||++||+|.++..++.....                                     ..+++|+|+++.+++.
T Consensus       199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~  278 (393)
T 3k0b_A          199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI  278 (393)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence            467789999999999999988876531                                     1469999999999999


Q ss_pred             HHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757          70 SIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        70 a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      |++++.. ++     ..+++++++|+.+ +.      ..++||+|++||+++.
T Consensus       279 Ar~Na~~~gl-----~~~I~~~~~D~~~-~~------~~~~fD~Iv~NPPYg~  319 (393)
T 3k0b_A          279 AKQNAVEAGL-----GDLITFRQLQVAD-FQ------TEDEYGVVVANPPYGE  319 (393)
T ss_dssp             HHHHHHHTTC-----TTCSEEEECCGGG-CC------CCCCSCEEEECCCCCC
T ss_pred             HHHHHHHcCC-----CCceEEEECChHh-CC------CCCCCCEEEECCCCcc
Confidence            9999988 65     3469999999765 21      1357999999999753

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.16  E-value=3e-10  Score=86.25  Aligned_cols=83  Identities=11%  Similarity=0.093  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCC-------------------------------------CceEEEEeCCHHHHHH
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNS-------------------------------------TGQVIGIEHVPQLVNS   69 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~-------------------------------------~~~v~~~d~~~~~~~~   69 (139)
                      .+++..++|.+||+|.+...++.....                                     ..+++|+|+|+.+++.
T Consensus       192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~  271 (384)
T 3ldg_A          192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI  271 (384)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence            467889999999999999988876531                                     1469999999999999


Q ss_pred             HHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757          70 SIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        70 a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      |++++.. ++     ..+++++++|+.+ +.      ..++||+|++||+++.
T Consensus       272 Ar~Na~~~gl-----~~~I~~~~~D~~~-l~------~~~~fD~Iv~NPPYG~  312 (384)
T 3ldg_A          272 ARKNAREVGL-----EDVVKLKQMRLQD-FK------TNKINGVLISNPPYGE  312 (384)
T ss_dssp             HHHHHHHTTC-----TTTEEEEECCGGG-CC------CCCCSCEEEECCCCTT
T ss_pred             HHHHHHHcCC-----CCceEEEECChHH-CC------ccCCcCEEEECCchhh
Confidence            9999988 65     3569999999765 21      1247999999999764

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.15  E-value=4.7e-10  Score=85.40  Aligned_cols=78  Identities=9%  Similarity=0.073  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .+++++|||+|||+|.++..+++...   .|+++|+|+.+++.|++++.. +.      . ..+.++|+.+.+..    .
T Consensus       212 ~~~g~~VLDlg~GtG~~sl~~a~~ga---~V~avDis~~al~~a~~n~~~ng~------~-~~~~~~D~~~~l~~----~  277 (393)
T 4dmg_A          212 VRPGERVLDVYSYVGGFALRAARKGA---YALAVDKDLEALGVLDQAALRLGL------R-VDIRHGEALPTLRG----L  277 (393)
T ss_dssp             CCTTCEEEEESCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTC------C-CEEEESCHHHHHHT----C
T ss_pred             hcCCCeEEEcccchhHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHhCC------C-CcEEEccHHHHHHH----h
Confidence            45689999999999999999999753   699999999999999999988 54      2 24668997664332    1


Q ss_pred             cCCceeEEecCccc
Q psy5757         106 KFDRYDFLPHAPAE  119 (139)
Q Consensus       106 ~~~~~D~vi~~~~~  119 (139)
                       .+.||+|+++++.
T Consensus       278 -~~~fD~Ii~dpP~  290 (393)
T 4dmg_A          278 -EGPFHHVLLDPPT  290 (393)
T ss_dssp             -CCCEEEEEECCCC
T ss_pred             -cCCCCEEEECCCc
Confidence             2349999999874

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.15  E-value=7.9e-11  Score=88.35  Aligned_cols=96  Identities=17%  Similarity=0.169  Sum_probs=76.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .+..+|+|+|||+|..+..++++. |..+++..|. |++++.|++++....     .++++++.+|+.+        .+.
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~-----~~rv~~~~gD~~~--------~~~  242 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQE-----EEQIDFQEGDFFK--------DPL  242 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC-------CCSEEEEESCTTT--------SCC
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcc-----cCceeeecCcccc--------CCC
Confidence            456799999999999999999999 5778888887 789999988876522     3799999999654        123


Q ss_pred             CceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      ..+|++++..++|.++++.     ...+++++|+|.
T Consensus       243 ~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~  278 (353)
T 4a6d_A          243 PEADLYILARVLHDWADGKCSHLLERIYHTCKPGGG  278 (353)
T ss_dssp             CCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCE
T ss_pred             CCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCE
Confidence            4589999999999988874     334777888875

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.11  E-value=5.2e-10  Score=86.45  Aligned_cols=82  Identities=12%  Similarity=0.107  Sum_probs=66.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++.+|||+|||+|..+..+++..+..++++++|+++.+++.+++++.. +.      .+++++++|+.+. .   ...
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~------~~v~~~~~D~~~~-~---~~~  326 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI------KIVKPLVKDARKA-P---EII  326 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC------CSEEEECSCTTCC-S---SSS
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEEEcChhhc-c---hhh
Confidence            57889999999999999999999885447999999999999999999988 54      6899999996552 1   111


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      +.++||+|+++++
T Consensus       327 ~~~~fD~Vl~D~P  339 (450)
T 2yxl_A          327 GEEVADKVLLDAP  339 (450)
T ss_dssp             CSSCEEEEEEECC
T ss_pred             ccCCCCEEEEcCC
Confidence            2357999998654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.09  E-value=1.2e-10  Score=79.73  Aligned_cols=78  Identities=17%  Similarity=0.256  Sum_probs=55.5

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCC--------ceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEE-Eccchhh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNST--------GQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFV-ALGMIKR   97 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~--------~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~-~~d~~~~   97 (139)
                      ++++.+|||+|||+|.++..+++..+..        ++++++|+++..          .      ..+++++ .+|+.+.
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~------~~~~~~~~~~d~~~~   83 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------P------LEGATFLCPADVTDP   83 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------C------CTTCEEECSCCTTSH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------c------CCCCeEEEeccCCCH
Confidence            5788999999999999999999997532        699999999731          1      2567888 8886542


Q ss_pred             h-H-HHhhhccCCceeEEecCcccc
Q psy5757          98 I-E-TVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        98 ~-~-~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      . . .+....+.++||+|+++.+++
T Consensus        84 ~~~~~~~~~~~~~~fD~V~~~~~~~  108 (196)
T 2nyu_A           84 RTSQRILEVLPGRRADVILSDMAPN  108 (196)
T ss_dssp             HHHHHHHHHSGGGCEEEEEECCCCC
T ss_pred             HHHHHHHHhcCCCCCcEEEeCCCCC
Confidence            1 1 111112235799999976544

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.09  E-value=5.4e-10  Score=88.19  Aligned_cols=108  Identities=15%  Similarity=0.023  Sum_probs=84.2

Q ss_pred             hhcccccChHHHHHHHHHhcccC--CCCCeEEEEcccCChhHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHHHh-hcc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHL--NENSKVLEIGSGSGYLTNMISELMN--STGQVIGIEHVPQLVNSSIQNILH-SNA   79 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~iLdiG~G~G~~~~~l~~~~~--~~~~v~~~d~~~~~~~~a~~~~~~-~~~   79 (139)
                      +.|+.+++++++..+.+.+....  .++.+|+|.+||||.+...+++...  ...+++|+|+++.++..|+.++.. +. 
T Consensus       195 ~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi-  273 (542)
T 3lkd_A          195 KAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV-  273 (542)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC-
T ss_pred             cCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC-
Confidence            35888999999999999886322  4678999999999999999998863  245899999999999999999876 43 


Q ss_pred             ccccCCcEEEEEccchhh-hHHHhhhccCCceeEEecCcccc
Q psy5757          80 RLLTDGHIKFVALGMIKR-IETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        80 ~~~~~~~i~~~~~d~~~~-~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                         ..+++++.++|.+.. ++.    ....+||+|++||++.
T Consensus       274 ---~~~~~~I~~gDtL~~d~p~----~~~~~fD~IvaNPPf~  308 (542)
T 3lkd_A          274 ---PIENQFLHNADTLDEDWPT----QEPTNFDGVLMNPPYS  308 (542)
T ss_dssp             ---CGGGEEEEESCTTTSCSCC----SSCCCBSEEEECCCTT
T ss_pred             ---CcCccceEecceecccccc----cccccccEEEecCCcC
Confidence               124788999996541 110    1346799999999976

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.09  E-value=2.6e-10  Score=82.34  Aligned_cols=88  Identities=9%  Similarity=0.129  Sum_probs=65.3

Q ss_pred             CCCC--CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccccc---CCcEEEEEccchhhhHH
Q psy5757          27 LNEN--SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLT---DGHIKFVALGMIKRIET  100 (139)
Q Consensus        27 ~~~~--~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~---~~~i~~~~~d~~~~~~~  100 (139)
                      ++++  .+|||+|||+|..+..++....   +|+++|+++.+...++++++. .....++   ..+++++++|..+.+..
T Consensus        84 l~~g~~~~VLDl~~G~G~dal~lA~~g~---~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~  160 (258)
T 2oyr_A           84 IKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD  160 (258)
T ss_dssp             CBTTBCCCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT
T ss_pred             ccCCCCCEEEEcCCcCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh
Confidence            3566  8999999999999999999854   899999999987777777654 2100011   15799999997663332


Q ss_pred             HhhhccCCceeEEecCcccccc
Q psy5757         101 VELMMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus       101 ~~~~~~~~~~D~vi~~~~~~~~  122 (139)
                      +     .++||+|+++|.+++-
T Consensus       161 ~-----~~~fDvV~lDP~y~~~  177 (258)
T 2oyr_A          161 I-----TPRPQVVYLDPMFPHK  177 (258)
T ss_dssp             C-----SSCCSEEEECCCCCCC
T ss_pred             C-----cccCCEEEEcCCCCCc
Confidence            1     2369999999998763

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=99.09  E-value=1.1e-09  Score=79.53  Aligned_cols=101  Identities=14%  Similarity=0.133  Sum_probs=75.1

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+++.+.  ++++..+||.+||.|+.+..+++.   .++|+|+|.|+.+++.|++ +..        ++++++++|+.
T Consensus        11 l~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~--------~rv~lv~~~f~   76 (285)
T 1wg8_A           11 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL--------PGLTVVQGNFR   76 (285)
T ss_dssp             HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC--------TTEEEEESCGG
T ss_pred             HHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc--------CCEEEEECCcc
Confidence            566777775  578899999999999999999998   3599999999999999998 643        58999999977


Q ss_pred             hhhHHHhhhccCCceeEEecCcc---ccccccceeeeee
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPA---ESWMNIPVCINYT  131 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~---~~~~~~p~~~~~~  131 (139)
                      + +..+-.....+++|.|+++.-   +|+-..-.++.|+
T Consensus        77 ~-l~~~L~~~g~~~vDgIL~DLGvSS~Qld~~~RGFSf~  114 (285)
T 1wg8_A           77 H-LKRHLAALGVERVDGILADLGVSSFHLDDPSRGFSYQ  114 (285)
T ss_dssp             G-HHHHHHHTTCSCEEEEEEECSCCHHHHHCGGGCCCSS
T ss_pred             h-HHHHHHHcCCCCcCEEEeCCccccccccccccCcccc
Confidence            6 443222333467999997654   3332222455554

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.08  E-value=2.4e-10  Score=86.62  Aligned_cols=84  Identities=12%  Similarity=0.022  Sum_probs=64.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcc----------ccccCCcEEEEEccchhhh
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA----------RLLTDGHIKFVALGMIKRI   98 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~----------~~~~~~~i~~~~~d~~~~~   98 (139)
                      ++.+|||+|||+|..+..++++.+ ..+|+++|+++.+++.++++++.+..          ...+..+++++++|+.+.+
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence            678999999999999999999863 34899999999999999999987300          0002345999999976633


Q ss_pred             HHHhhhccCCceeEEecCcc
Q psy5757          99 ETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        99 ~~~~~~~~~~~~D~vi~~~~  118 (139)
                      ...     .++||+|+.+|.
T Consensus       126 ~~~-----~~~fD~I~lDP~  140 (378)
T 2dul_A          126 AER-----HRYFHFIDLDPF  140 (378)
T ss_dssp             HHS-----TTCEEEEEECCS
T ss_pred             Hhc-----cCCCCEEEeCCC
Confidence            321     346999998875

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.07  E-value=5.2e-11  Score=89.06  Aligned_cols=90  Identities=16%  Similarity=0.192  Sum_probs=71.1

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +.+..+|||+|||+|..+..+++.. |..+++++|+ +.+++.+++   .        ++++++.+|+.+.       .+
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~--------~~v~~~~~d~~~~-------~p  245 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG---S--------NNLTYVGGDMFTS-------IP  245 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC---B--------TTEEEEECCTTTC-------CC
T ss_pred             cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhccc---C--------CCcEEEeccccCC-------CC
Confidence            4567899999999999999999988 4669999999 888876653   1        5699999996431       12


Q ss_pred             CCceeEEecCccccccccce-----eeeeeeccC---CCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPV-----CINYTATMP---EGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p---~g~  138 (139)
                        .||+|+++.++|++.++.     ...++.++|   +|.
T Consensus       246 --~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~  283 (352)
T 1fp2_A          246 --NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGK  283 (352)
T ss_dssp             --CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCE
T ss_pred             --CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcE
Confidence              399999999999888765     333777888   774

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.07  E-value=2.7e-11  Score=91.28  Aligned_cols=90  Identities=18%  Similarity=0.166  Sum_probs=69.7

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +.++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++           .++++++.+|+.+.       .+
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~-------~~  266 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP-----------LSGIEHVGGDMFAS-------VP  266 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTC-------CC
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh-----------cCCCEEEeCCcccC-------CC
Confidence            3567899999999999999999998 4678999999 888876543           15799999996541       12


Q ss_pred             CCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                        .+|+|+++.++|++.++.     ...++.++|+|.
T Consensus       267 --~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~  301 (372)
T 1fp1_D          267 --QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGK  301 (372)
T ss_dssp             --CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             --CCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCE
Confidence              299999999999998764     333666677663

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.07  E-value=4.8e-11  Score=89.92  Aligned_cols=90  Identities=13%  Similarity=0.148  Sum_probs=70.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +.+..+|||+|||+|..+..+++.. |..+++++|+ +.+++.+++           .++++++.+|+.+.       .+
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~~-------~p  260 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPA-----------FSGVEHLGGDMFDG-------VP  260 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTC-------CC
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhh-----------cCCCEEEecCCCCC-------CC
Confidence            3456899999999999999999998 5779999999 887765542           26899999996541       12


Q ss_pred             CCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      . . |+|++..++|++.++.     ...+++++|+|.
T Consensus       261 ~-~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~  295 (368)
T 3reo_A          261 K-G-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGK  295 (368)
T ss_dssp             C-C-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCE
T ss_pred             C-C-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCE
Confidence            2 2 9999999999888763     334778888884

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.06  E-value=2.3e-10  Score=82.47  Aligned_cols=85  Identities=11%  Similarity=0.022  Sum_probs=70.7

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .+.+..+|||+|||+|-++..++... +.++++++|+++.+++.+++++.. +.       +..+.+.|...       .
T Consensus       129 ~i~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~-------~~~~~v~D~~~-------~  193 (281)
T 3lcv_B          129 HLPRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNV-------PHRTNVADLLE-------D  193 (281)
T ss_dssp             GSCCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTC-------CEEEEECCTTT-------S
T ss_pred             ccCCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCC-------CceEEEeeecc-------c
Confidence            34567799999999999999999876 578999999999999999999988 43       47888888543       2


Q ss_pred             ccCCceeEEecCccccccccc
Q psy5757         105 MKFDRYDFLPHAPAESWMNIP  125 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~~p  125 (139)
                      .+..++|+++++.++|++.+-
T Consensus       194 ~p~~~~DvaL~lkti~~Le~q  214 (281)
T 3lcv_B          194 RLDEPADVTLLLKTLPCLETQ  214 (281)
T ss_dssp             CCCSCCSEEEETTCHHHHHHH
T ss_pred             CCCCCcchHHHHHHHHHhhhh
Confidence            345789999999999988653

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.05  E-value=5.5e-11  Score=84.53  Aligned_cols=56  Identities=16%  Similarity=0.144  Sum_probs=43.6

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI   74 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~   74 (139)
                      ...+++.+. ...++.+|||+|||+|.++..+++...  .+|+|+|+++.+++.++++.
T Consensus        25 L~~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~   80 (232)
T 3opn_A           25 LEKALKEFH-LEINGKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSD   80 (232)
T ss_dssp             HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTC
T ss_pred             HHHHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhC
Confidence            444555543 124567999999999999999999842  29999999999999887754

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.04  E-value=5.1e-10  Score=79.88  Aligned_cols=80  Identities=13%  Similarity=0.039  Sum_probs=65.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .+..+|||+|||+|.++.++.    +..+++++|+|+.+++.+++++....      .+..+.+.|...       ..+.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g------~~~~~~v~D~~~-------~~~~  166 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKD------WDFTFALQDVLC-------APPA  166 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTT------CEEEEEECCTTT-------SCCC
T ss_pred             CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcC------CCceEEEeeccc-------CCCC
Confidence            567899999999999999888    45699999999999999999987721      577888888543       1234


Q ss_pred             CceeEEecCcccccccc
Q psy5757         108 DRYDFLPHAPAESWMNI  124 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~  124 (139)
                      +++|+++++.++|++.+
T Consensus       167 ~~~DvvLllk~lh~LE~  183 (253)
T 3frh_A          167 EAGDLALIFKLLPLLER  183 (253)
T ss_dssp             CBCSEEEEESCHHHHHH
T ss_pred             CCcchHHHHHHHHHhhh
Confidence            68999999999888754

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.04  E-value=3e-11  Score=87.35  Aligned_cols=76  Identities=13%  Similarity=0.126  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..+++|||+|||+|..+..+++. +  .+++++|+++.+++.|++++.. ..  .+..++++++.+|+.+.+        
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~--~~~~~rv~~~~~D~~~~~--------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQLLDLDI--------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHH--HHTCTTEEEESSGGGSCC--------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhcc--ccCCCeEEEEechHHHHH--------
Confidence            45689999999999999999988 4  5999999999999999887643 10  022468999999965421        


Q ss_pred             CCceeEEecCc
Q psy5757         107 FDRYDFLPHAP  117 (139)
Q Consensus       107 ~~~~D~vi~~~  117 (139)
                       ++||+|+++.
T Consensus       138 -~~fD~Ii~d~  147 (262)
T 2cmg_A          138 -KKYDLIFCLQ  147 (262)
T ss_dssp             -CCEEEEEESS
T ss_pred             -hhCCEEEECC
Confidence             5799999985

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.03  E-value=2e-10  Score=86.49  Aligned_cols=90  Identities=16%  Similarity=0.127  Sum_probs=69.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +.+..+|||+|||+|..+..+++.. |..+++++|+ +.+++.+++           .++++++.+|+.+.       .+
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~-------~p  258 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ-----------FPGVTHVGGDMFKE-------VP  258 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC-----------CTTEEEEECCTTTC-------CC
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh-----------cCCeEEEeCCcCCC-------CC
Confidence            4567899999999999999999998 5679999999 777765542           26899999996541       12


Q ss_pred             CCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      . . |+|++..++|++.++.     ...+++++|+|.
T Consensus       259 ~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~  293 (364)
T 3p9c_A          259 S-G-DTILMKWILHDWSDQHCATLLKNCYDALPAHGK  293 (364)
T ss_dssp             C-C-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCE
T ss_pred             C-C-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCE
Confidence            2 2 9999999999887653     334778888874

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.02  E-value=1.7e-09  Score=83.02  Aligned_cols=89  Identities=11%  Similarity=0.082  Sum_probs=69.4

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+...+.  ..++.+|||+|||+|..+..+++..+ .++++++|+++.+++.+++++.. +.       +++++++|+
T Consensus       235 s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~-------~~~~~~~D~  304 (429)
T 1sqg_A          235 AQGCMTWLA--PQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGM-------KATVKQGDG  304 (429)
T ss_dssp             HHTHHHHHC--CCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTC-------CCEEEECCT
T ss_pred             HHHHHHHcC--CCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCC-------CeEEEeCch
Confidence            334445554  57889999999999999999999884 47999999999999999999987 43       478889997


Q ss_pred             hhhhHHHhhhccCCceeEEecCcc
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      .+....    .+.++||+|+++++
T Consensus       305 ~~~~~~----~~~~~fD~Vl~D~P  324 (429)
T 1sqg_A          305 RYPSQW----CGEQQFDRILLDAP  324 (429)
T ss_dssp             TCTHHH----HTTCCEEEEEEECC
T ss_pred             hhchhh----cccCCCCEEEEeCC
Confidence            652211    12357999998765

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.02  E-value=2.2e-10  Score=87.12  Aligned_cols=80  Identities=10%  Similarity=-0.010  Sum_probs=64.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCc-EEEEEccchhhhH-HHhhh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGH-IKFVALGMIKRIE-TVELM  104 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~-i~~~~~d~~~~~~-~~~~~  104 (139)
                      .++.+|||++||+|.++..++.+.+-..+|+++|+++.+++.++++++. ++     ..+ ++++.+|+.+.+. .    
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl-----~~~~v~v~~~Da~~~l~~~----  121 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI-----PEDRYEIHGMEANFFLRKE----  121 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC-----CGGGEEEECSCHHHHHHSC----
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCceEEEEeCCHHHHHHHh----
Confidence            4578999999999999999999753124899999999999999999998 54     234 9999999766332 2    


Q ss_pred             ccCCceeEEecCc
Q psy5757         105 MKFDRYDFLPHAP  117 (139)
Q Consensus       105 ~~~~~~D~vi~~~  117 (139)
                       ..++||+|+.+|
T Consensus       122 -~~~~fD~V~lDP  133 (392)
T 3axs_A          122 -WGFGFDYVDLDP  133 (392)
T ss_dssp             -CSSCEEEEEECC
T ss_pred             -hCCCCcEEEECC
Confidence             135799999999

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.01  E-value=3.3e-10  Score=89.47  Aligned_cols=104  Identities=16%  Similarity=0.113  Sum_probs=78.1

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCC--------------CceEEEEeCCHHHHHHH
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNS--------------TGQVIGIEHVPQLVNSS   70 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~--------------~~~v~~~d~~~~~~~~a   70 (139)
                      +.|+.+++++++..+.+.+.+  .++ +|+|.+||||.+...+++....              ..+++|+|+++.++..|
T Consensus       223 ~~G~fyTP~~Vv~lmv~ll~p--~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA  299 (544)
T 3khk_A          223 QGGQYYTPKSIVTLIVEMLEP--YKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLA  299 (544)
T ss_dssp             CSTTTCCCHHHHHHHHHHHCC--CSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHH
T ss_pred             cCCeEeCCHHHHHHHHHHHhc--CCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHH
Confidence            457889999999999998863  343 9999999999998888665410              34899999999999999


Q ss_pred             HHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757          71 IQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        71 ~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      +.++.. +.     ..++.+.++|.+...     ..+..+||+|++||++..
T Consensus       300 ~~Nl~l~gi-----~~~i~i~~gDtL~~~-----~~~~~~fD~Iv~NPPf~~  341 (544)
T 3khk_A          300 AMNMVIRGI-----DFNFGKKNADSFLDD-----QHPDLRADFVMTNPPFNM  341 (544)
T ss_dssp             HHHHHHTTC-----CCBCCSSSCCTTTSC-----SCTTCCEEEEEECCCSSC
T ss_pred             HHHHHHhCC-----CcccceeccchhcCc-----ccccccccEEEECCCcCC
Confidence            999877 54     234444777754311     112457999999999873

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.00  E-value=1.2e-11  Score=90.17  Aligned_cols=94  Identities=11%  Similarity=0.017  Sum_probs=62.5

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEE--EccchhhhHHHhhh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFV--ALGMIKRIETVELM  104 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~--~~d~~~~~~~~~~~  104 (139)
                      ++++.+|||+|||+|.++..+++. .   +|+|+|+++ ++..+++......  .. ..+++++  ++|+.+        
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~-~---~V~gVD~s~-m~~~a~~~~~~~~--~~-~~~v~~~~~~~D~~~--------  143 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ-P---NVREVKAYT-LGTSGHEKPRLVE--TF-GWNLITFKSKVDVTK--------  143 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS-T---TEEEEEEEC-CCCTTSCCCCCCC--CT-TGGGEEEECSCCGGG--------
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc-C---CEEEEECch-hhhhhhhchhhhh--hc-CCCeEEEeccCcHhh--------
Confidence            467889999999999999999988 3   899999997 5332221110000  00 1278888  888544        


Q ss_pred             ccCCceeEEecCcccccccc----------ceeeeeeeccCCC
Q psy5757         105 MKFDRYDFLPHAPAESWMNI----------PVCINYTATMPEG  137 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~~----------p~~~~~~~~~p~g  137 (139)
                      .+.++||+|+++.+ ++...          .....++.++|+|
T Consensus       144 l~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG  185 (276)
T 2wa2_A          144 MEPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQ  185 (276)
T ss_dssp             CCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             CCCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCC
Confidence            12467999999877 43222          1233467788888

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.98  E-value=2.3e-09  Score=86.98  Aligned_cols=95  Identities=13%  Similarity=0.094  Sum_probs=71.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHc-----------------------------------------CCC
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELM-----------------------------------------NST   54 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~-----------------------------------------~~~   54 (139)
                      ...++....  .+++..++|.+||||.+...++...                                         .+.
T Consensus       179 Aa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~  256 (703)
T 3v97_A          179 AAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS  256 (703)
T ss_dssp             HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence            344444443  4677899999999999999888753                                         112


Q ss_pred             ceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757          55 GQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        55 ~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      .+++|+|+++.+++.|++++.. ++     ...+++.++|+.+ +.   .+...+++|+|++||++..
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~agv-----~~~i~~~~~D~~~-~~---~~~~~~~~d~Iv~NPPYG~  315 (703)
T 3v97_A          257 SHFYGSDSDARVIQRARTNARLAGI-----GELITFEVKDVAQ-LT---NPLPKGPYGTVLSNPPYGE  315 (703)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEECCGGG-CC---CSCTTCCCCEEEECCCCCC
T ss_pred             ccEEEEECCHHHHHHHHHHHHHcCC-----CCceEEEECChhh-Cc---cccccCCCCEEEeCCCccc
Confidence            5899999999999999999998 66     3459999999765 21   1111237999999999764

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.96  E-value=2.8e-11  Score=87.69  Aligned_cols=93  Identities=10%  Similarity=0.063  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEE--EccchhhhHHHhh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFV--ALGMIKRIETVEL  103 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~--~~d~~~~~~~~~~  103 (139)
                      ++++.+|||+|||+|.++..+++. .   +|+|+|+++ ++..+++.... ..   . ..+++++  ++|+.+       
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~-~---~V~gvD~s~-m~~~a~~~~~~~~~---~-~~~v~~~~~~~D~~~-------  135 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR-P---HVMDVRAYT-LGVGGHEVPRITES---Y-GWNIVKFKSRVDIHT-------  135 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS-T---TEEEEEEEC-CCCSSCCCCCCCCB---T-TGGGEEEECSCCTTT-------
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc-C---cEEEEECch-hhhhhhhhhhhhhc---c-CCCeEEEecccCHhH-------
Confidence            567889999999999999999987 3   899999997 43222111000 00   0 0278888  888654       


Q ss_pred             hccCCceeEEecCcccccccc----------ceeeeeeeccCCC
Q psy5757         104 MMKFDRYDFLPHAPAESWMNI----------PVCINYTATMPEG  137 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~~~~~~----------p~~~~~~~~~p~g  137 (139)
                       .+.++||+|+++.+ +....          .....++.++|+|
T Consensus       136 -l~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG  177 (265)
T 2oxt_A          136 -LPVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNP  177 (265)
T ss_dssp             -SCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             -CCCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCC
Confidence             12467999999877 33222          1233467888888

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.95  E-value=1.5e-10  Score=80.45  Aligned_cols=87  Identities=11%  Similarity=0.041  Sum_probs=60.2

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      .+++.+. ...++.+|||+|||+|..+..++      .+++++|+++.                    +++++.+|+.+ 
T Consensus        57 ~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~--------------------~~~~~~~d~~~-  108 (215)
T 2zfu_A           57 RIARDLR-QRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL--------------------DPRVTVCDMAQ-  108 (215)
T ss_dssp             HHHHHHH-TSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS--------------------STTEEESCTTS-
T ss_pred             HHHHHHh-ccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC--------------------CceEEEecccc-
Confidence            3455554 24577899999999999888773      38999999974                    34467777544 


Q ss_pred             hHHHhhhccCCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757          98 IETVELMMKFDRYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      +     +.+.++||+|+++.++|+ .++.   ...++.++|+|.
T Consensus       109 ~-----~~~~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~gG~  146 (215)
T 2zfu_A          109 V-----PLEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGL  146 (215)
T ss_dssp             C-----SCCTTCEEEEEEESCCCS-SCHHHHHHHHHHHEEEEEE
T ss_pred             C-----CCCCCCEeEEEEehhccc-cCHHHHHHHHHHhCCCCeE
Confidence            1     223567999999999986 4442   223566666663

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.95  E-value=2.6e-10  Score=85.41  Aligned_cols=89  Identities=19%  Similarity=0.221  Sum_probs=69.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++           .++++++.+|+.+       .  .
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~d~~~-------~--~  249 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG-----------NENLNFVGGDMFK-------S--I  249 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC-----------CSSEEEEECCTTT-------C--C
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc-----------CCCcEEEeCccCC-------C--C
Confidence            466899999999999999999998 4678999999 677765543           1569999999643       1  1


Q ss_pred             CceeEEecCccccccccce-----eeeeeeccC---CCC
Q psy5757         108 DRYDFLPHAPAESWMNIPV-----CINYTATMP---EGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p---~g~  138 (139)
                      ..||+|+++.++|++.++.     ...++.++|   +|.
T Consensus       250 ~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~  288 (358)
T 1zg3_A          250 PSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGK  288 (358)
T ss_dssp             CCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCE
T ss_pred             CCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcE
Confidence            2499999999999988765     233677777   764

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.94  E-value=3.2e-09  Score=83.67  Aligned_cols=106  Identities=14%  Similarity=0.079  Sum_probs=80.7

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCC------------CceEEEEeCCHHHHHHHHH
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNS------------TGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~------------~~~v~~~d~~~~~~~~a~~   72 (139)
                      +.|+++++++++..+.+.+.  ..++.+|+|.+||||++...+.+....            ...++|+|+++.+...|+.
T Consensus       195 ~~GqfyTP~~Vv~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~m  272 (530)
T 3ufb_A          195 DSGEFYTPRPVVRFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQM  272 (530)
T ss_dssp             SCCCCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHH
T ss_pred             cCceECCcHHHHHHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHH
Confidence            45889999999999999987  467789999999999999888775521            2369999999999999999


Q ss_pred             HHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          73 NILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        73 ~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      ++.. +.      ...++.++|.....  .....+..+||+|++||+|.
T Consensus       273 Nl~lhg~------~~~~I~~~dtL~~~--~~~~~~~~~fD~Il~NPPf~  313 (530)
T 3ufb_A          273 NLLLHGL------EYPRIDPENSLRFP--LREMGDKDRVDVILTNPPFG  313 (530)
T ss_dssp             HHHHHTC------SCCEEECSCTTCSC--GGGCCGGGCBSEEEECCCSS
T ss_pred             HHHhcCC------ccccccccccccCc--hhhhcccccceEEEecCCCC
Confidence            8876 54      45567778765311  11112235799999999975

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.92  E-value=8.1e-11  Score=86.84  Aligned_cols=94  Identities=13%  Similarity=0.095  Sum_probs=63.7

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeC----CHHHHHHHHHHHHhhccccccCCcEEEEEc-cchhhhHHH
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEH----VPQLVNSSIQNILHSNARLLTDGHIKFVAL-GMIKRIETV  101 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~----~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~  101 (139)
                      ++++.+|||+|||+|.++..+++. .   +|+++|+    ++..++.+.  ...     ...++++++.+ |+.+     
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~-~---~V~gvD~~~~~~~~~~~~~~--~~~-----~~~~~v~~~~~~D~~~-----  143 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL-K---NVREVKGLTKGGPGHEEPIP--MST-----YGWNLVRLQSGVDVFF-----  143 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS-T---TEEEEEEECCCSTTSCCCCC--CCS-----TTGGGEEEECSCCTTT-----
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc-C---CEEEEeccccCchhHHHHHH--hhh-----cCCCCeEEEecccccc-----
Confidence            567889999999999999999987 3   8999999    543321110  111     11257899988 8543     


Q ss_pred             hhhccCCceeEEecCccc---cccccc------eeeeeeeccCCCCC
Q psy5757         102 ELMMKFDRYDFLPHAPAE---SWMNIP------VCINYTATMPEGSY  139 (139)
Q Consensus       102 ~~~~~~~~~D~vi~~~~~---~~~~~p------~~~~~~~~~p~g~~  139 (139)
                         .+.++||+|+++.++   ||..+.      ....++.++|+|.+
T Consensus       144 ---l~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~  187 (305)
T 2p41_A          144 ---IPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQF  187 (305)
T ss_dssp             ---SCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEE
T ss_pred             ---CCcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEE
Confidence               124679999998775   343322      23346888999853

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.92  E-value=6.2e-09  Score=71.70  Aligned_cols=74  Identities=18%  Similarity=0.367  Sum_probs=54.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh--HHHhhh
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI--ETVELM  104 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~  104 (139)
                      ++++.+|||+|||+|.++..+++.   .++|+|+|+++..         .       .++++++++|+.+.-  ..+...
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~---------~-------~~~v~~~~~D~~~~~~~~~~~~~   83 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME---------E-------IAGVRFIRCDIFKETIFDDIDRA   83 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC---------C-------CTTCEEEECCTTSSSHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc---------c-------CCCeEEEEccccCHHHHHHHHHH
Confidence            578899999999999999999998   3499999999731         1       268999999987521  111111


Q ss_pred             cc---CCceeEEecCccc
Q psy5757         105 MK---FDRYDFLPHAPAE  119 (139)
Q Consensus       105 ~~---~~~~D~vi~~~~~  119 (139)
                      ..   .++||+|+++...
T Consensus        84 ~~~~~~~~~D~Vlsd~~~  101 (191)
T 3dou_A           84 LREEGIEKVDDVVSDAMA  101 (191)
T ss_dssp             HHHHTCSSEEEEEECCCC
T ss_pred             hhcccCCcceEEecCCCc
Confidence            11   1389999998753

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.91  E-value=1.1e-08  Score=83.67  Aligned_cols=109  Identities=14%  Similarity=0.110  Sum_probs=75.2

Q ss_pred             hhcccccChHHHHHHHHH----hcccCCCCCeEEEEcccCChhHHHHHHHcC--CCceEEEEeCCHHHHHHH--HHHHHh
Q psy5757           5 KIGAAIGGISAILTYLSI----IQPHLNENSKVLEIGSGSGYLTNMISELMN--STGQVIGIEHVPQLVNSS--IQNILH   76 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~----l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~--~~~~v~~~d~~~~~~~~a--~~~~~~   76 (139)
                      +.|++++++.++..+.+.    +.....++.+|+|.|||+|.+...+++..+  ...+++|+|+++.+++.|  +.++..
T Consensus       293 k~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~l  372 (878)
T 3s1s_A          293 HEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLF  372 (878)
T ss_dssp             CCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTS
T ss_pred             cCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence            457888888888888877    322335678999999999999999998773  135899999999999999  444432


Q ss_pred             -hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          77 -SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        77 -~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                       ...  -+.....+...|+.+ ..    .....+||+|++||++.
T Consensus       373 N~Ll--hGi~~~~I~~dD~L~-~~----~~~~~kFDVVIgNPPYg  410 (878)
T 3s1s_A          373 PQLV--SSNNAPTITGEDVCS-LN----PEDFANVSVVVMNPPYV  410 (878)
T ss_dssp             TTTC--BTTBCCEEECCCGGG-CC----GGGGTTEEEEEECCBCC
T ss_pred             hhhh--cCCCcceEEecchhc-cc----ccccCCCCEEEECCCcc
Confidence             110  011233555566443 11    11246799999999984

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.84  E-value=4e-10  Score=76.14  Aligned_cols=82  Identities=11%  Similarity=-0.002  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhh-c
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELM-M  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~  105 (139)
                      +.++.+|||+|||.                 +++|+++.+++.|+++...         +++++++|+.+ +.   .. .
T Consensus        10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~---------~~~~~~~d~~~-~~---~~~~   59 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN---------EGRVSVENIKQ-LL---QSAH   59 (176)
T ss_dssp             CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT---------TSEEEEEEGGG-GG---GGCC
T ss_pred             CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc---------CcEEEEechhc-Cc---cccC
Confidence            57899999999985                 2389999999999887532         47889999654 22   20 1


Q ss_pred             cCCceeEEecCcccccc-ccce---eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWM-NIPV---CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~-~~p~---~~~~~~~~p~g~  138 (139)
                      +.++||+|+++.++||+ .++.   ...++.++|+|.
T Consensus        60 ~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~   96 (176)
T 2ld4_A           60 KESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGC   96 (176)
T ss_dssp             CSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEE
T ss_pred             CCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEE
Confidence            45789999999999999 6653   334778888875

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.78  E-value=4.6e-08  Score=72.73  Aligned_cols=91  Identities=11%  Similarity=0.137  Sum_probs=70.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+++.+.  .+++..++|..+|.|+.+..+++..++.++|+|+|.++.+++.++ ++.        ..+++++++++.
T Consensus        46 l~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~--------~~Rv~lv~~nF~  114 (347)
T 3tka_A           46 LDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID--------DPRFSIIHGPFS  114 (347)
T ss_dssp             THHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC--------CTTEEEEESCGG
T ss_pred             HHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc--------CCcEEEEeCCHH
Confidence            345666664  578899999999999999999999878889999999999999884 432        378999999977


Q ss_pred             hhhHHHhhhccC-CceeEEecCcc
Q psy5757          96 KRIETVELMMKF-DRYDFLPHAPA  118 (139)
Q Consensus        96 ~~~~~~~~~~~~-~~~D~vi~~~~  118 (139)
                      + +.++...... +++|.|+.+.-
T Consensus       115 ~-l~~~L~~~g~~~~vDgILfDLG  137 (347)
T 3tka_A          115 A-LGEYVAERDLIGKIDGILLDLG  137 (347)
T ss_dssp             G-HHHHHHHTTCTTCEEEEEEECS
T ss_pred             H-HHHHHHhcCCCCcccEEEECCc
Confidence            6 3332222222 36999988875

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.70  E-value=2.5e-09  Score=78.37  Aligned_cols=67  Identities=10%  Similarity=0.205  Sum_probs=48.9

Q ss_pred             CCCCCeEEEEcccC------ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEE-EEccchhhhH
Q psy5757          27 LNENSKVLEIGSGS------GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKF-VALGMIKRIE   99 (139)
Q Consensus        27 ~~~~~~iLdiG~G~------G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~-~~~d~~~~~~   99 (139)
                      ++++.+|||+|||+      |.  ..+++..++.++|+++|+++.            +      +++++ +++|+.+ +.
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------------v------~~v~~~i~gD~~~-~~  119 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------------V------SDADSTLIGDCAT-VH  119 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------------B------CSSSEEEESCGGG-CC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------------C------CCCEEEEECcccc-CC
Confidence            57889999999966      44  556666655679999999986            1      35677 9999654 11


Q ss_pred             HHhhhccCCceeEEecCcccc
Q psy5757         100 TVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus       100 ~~~~~~~~~~~D~vi~~~~~~  120 (139)
                            ..++||+|+++...+
T Consensus       120 ------~~~~fD~Vvsn~~~~  134 (290)
T 2xyq_A          120 ------TANKWDLIISDMYDP  134 (290)
T ss_dssp             ------CSSCEEEEEECCCCC
T ss_pred             ------ccCcccEEEEcCCcc
Confidence                  125799999987543

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.63  E-value=7e-08  Score=67.14  Aligned_cols=85  Identities=18%  Similarity=0.104  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--------
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--------   97 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--------   97 (139)
                      +.+.++|||+||  |+-+..+++..  .++|+++|.+++..+.|+++++. +.   -...+++++.+|+.+.        
T Consensus        28 l~~a~~VLEiGt--GySTl~lA~~~--~g~VvtvE~d~~~~~~ar~~l~~~g~---~~~~~I~~~~gda~~~~~wg~p~~  100 (202)
T 3cvo_A           28 YEEAEVILEYGS--GGSTVVAAELP--GKHVTSVESDRAWARMMKAWLAANPP---AEGTEVNIVWTDIGPTGDWGHPVS  100 (202)
T ss_dssp             HHHCSEEEEESC--SHHHHHHHTST--TCEEEEEESCHHHHHHHHHHHHHSCC---CTTCEEEEEECCCSSBCGGGCBSS
T ss_pred             hhCCCEEEEECc--hHHHHHHHHcC--CCEEEEEeCCHHHHHHHHHHHHHcCC---CCCCceEEEEeCchhhhccccccc
Confidence            356789999998  57888888742  56999999999999999999988 41   0026899999996542        


Q ss_pred             ------hHHHhh---hc-cCCceeEEecCcc
Q psy5757          98 ------IETVEL---MM-KFDRYDFLPHAPA  118 (139)
Q Consensus        98 ------~~~~~~---~~-~~~~~D~vi~~~~  118 (139)
                            ++++..   .. ..++||+|+....
T Consensus       101 ~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~  131 (202)
T 3cvo_A          101 DAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR  131 (202)
T ss_dssp             STTGGGTTHHHHGGGGCTTCCCCSEEEECSS
T ss_pred             chhhhhHHHHhhhhhccccCCCCCEEEEeCC
Confidence                  232211   11 2357999998876

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=98.56  E-value=5.1e-07  Score=67.75  Aligned_cols=83  Identities=12%  Similarity=0.067  Sum_probs=66.4

Q ss_pred             hhcc-cccChHHHHHHHHHhcccCC----CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcc
Q psy5757           5 KIGA-AIGGISAILTYLSIIQPHLN----ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA   79 (139)
Q Consensus         5 ~~~~-~~~~~~~~~~~~~~l~~~~~----~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~   79 (139)
                      .+|+ ++..+.++.++++.+...-.    ++..|||||+|.|.+|..|++...+ .+++++|+++.++...++.+ .   
T Consensus        29 ~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~vvavE~D~~l~~~L~~~~-~---  103 (353)
T 1i4w_A           29 FYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKF-E---  103 (353)
T ss_dssp             GGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHT-T---
T ss_pred             CCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCC-CEEEEEecCHHHHHHHHHhc-c---
Confidence            4677 55678888899988862111    3589999999999999999997532 28999999999999888876 3   


Q ss_pred             ccccCCcEEEEEccchh
Q psy5757          80 RLLTDGHIKFVALGMIK   96 (139)
Q Consensus        80 ~~~~~~~i~~~~~d~~~   96 (139)
                          .++++++.+|+.+
T Consensus       104 ----~~~l~ii~~D~l~  116 (353)
T 1i4w_A          104 ----GSPLQILKRDPYD  116 (353)
T ss_dssp             ----TSSCEEECSCTTC
T ss_pred             ----CCCEEEEECCccc
Confidence                3789999999876

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.55  E-value=4.2e-07  Score=72.85  Aligned_cols=76  Identities=14%  Similarity=0.193  Sum_probs=55.0

Q ss_pred             CCeEEEEcccCChhHHHH---HHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          30 NSKVLEIGSGSGYLTNMI---SELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l---~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ...|+|+|||+|.++.+.   +++...+.+|+++|.++ +...|++..+. ++     .++|+++++|+.+ +.      
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~-----~dkVtVI~gd~ee-v~------  424 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEW-----GSQVTVVSSDMRE-WV------  424 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTT-----GGGEEEEESCTTT-CC------
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccC-----CCeEEEEeCccee-cc------
Confidence            347999999999984444   44444445789999997 45566666665 55     5789999999766 22      


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ..+++|+|||=+-
T Consensus       425 LPEKVDIIVSEwM  437 (637)
T 4gqb_A          425 APEKADIIVSELL  437 (637)
T ss_dssp             CSSCEEEEECCCC
T ss_pred             CCcccCEEEEEcC
Confidence            2368999998664

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.55  E-value=5.6e-07  Score=65.90  Aligned_cols=86  Identities=19%  Similarity=0.203  Sum_probs=67.8

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .+..++||-||.|.|...+.+++..+ ..+++.+|+++..++.+++.+.......+..++++++.+|+.+.+.     ..
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~-----~~  154 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN-----QT  154 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTS-----CS
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHh-----hc
Confidence            35668999999999999999998763 4499999999999999999875411111446899999999887544     23


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      .++||+|+....
T Consensus       155 ~~~yDvIi~D~~  166 (294)
T 3o4f_A          155 SQTFDVIISDCT  166 (294)
T ss_dssp             SCCEEEEEESCC
T ss_pred             cccCCEEEEeCC
Confidence            568999998875

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.46  E-value=7.4e-08  Score=69.40  Aligned_cols=110  Identities=15%  Similarity=0.044  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc------CCC-----ceEEEEeCCH---HHHH-----------HHHHHHHhhc----
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM------NST-----GQVIGIEHVP---QLVN-----------SSIQNILHSN----   78 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~------~~~-----~~v~~~d~~~---~~~~-----------~a~~~~~~~~----   78 (139)
                      ++..+|||+|+|+|+.+..+++..      .|.     .+++++|..|   +.+.           .|++.+..+.    
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            345699999999999998887764      443     5899999876   4433           4444443210    


Q ss_pred             ---ccccc--CCcEEEEEccchhhhHHHhhhccCCceeEEecCcc-c--c---ccccceeeeeeeccCCCC
Q psy5757          79 ---ARLLT--DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPA-E--S---WMNIPVCINYTATMPEGS  138 (139)
Q Consensus        79 ---~~~~~--~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~-~--~---~~~~p~~~~~~~~~p~g~  138 (139)
                         +..+.  ..+++++.+|+.+.++++... ....||+|+..+- .  +   |-.+.....++.++|+|.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~-~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~  208 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDS-LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGT  208 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGG-GTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEE
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccc-cCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcE
Confidence               00011  146789999987765543111 1137999998741 1  1   223334455667777664

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.41  E-value=5.5e-07  Score=72.67  Aligned_cols=85  Identities=13%  Similarity=0.137  Sum_probs=58.2

Q ss_pred             CCeEEEEcccCChhHHHHHHHc---C---------CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757          30 NSKVLEIGSGSGYLTNMISELM---N---------STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~---~---------~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      +..|+|+|||+|.++.+.++..   +         ...+|+++|.++.+...+++....++     .++++++.+|+.+ 
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~-----~d~VtVI~gd~ee-  483 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTW-----KRRVTIIESDMRS-  483 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTT-----TTCSEEEESCGGG-
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCC-----CCeEEEEeCchhh-
Confidence            4579999999999975443332   1         23499999999988877666655544     3679999999776 


Q ss_pred             hHHHhhhccCCceeEEecCcccc
Q psy5757          98 IETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      +.--......+++|+|||=+--.
T Consensus       484 v~lp~~~~~~ekVDIIVSElmGs  506 (745)
T 3ua3_A          484 LPGIAKDRGFEQPDIIVSELLGS  506 (745)
T ss_dssp             HHHHHHHTTCCCCSEEEECCCBT
T ss_pred             cccccccCCCCcccEEEEecccc
Confidence            32100011247899999877633

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.40  E-value=6.5e-07  Score=59.03  Aligned_cols=50  Identities=16%  Similarity=0.234  Sum_probs=38.9

Q ss_pred             HHHHHHHHhcccCCCCCeEEEEcccCC-hhHHHHHHHcCCCceEEEEeCCHHH
Q psy5757          15 AILTYLSIIQPHLNENSKVLEIGSGSG-YLTNMISELMNSTGQVIGIEHVPQL   66 (139)
Q Consensus        15 ~~~~~~~~l~~~~~~~~~iLdiG~G~G-~~~~~l~~~~~~~~~v~~~d~~~~~   66 (139)
                      +...+.+.+.....++.++||+|||+| ..+..|++..+.  .|+++|+++.+
T Consensus        21 m~e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~--~V~atDInp~A   71 (153)
T 2k4m_A           21 MWNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKV--DLVLTDIKPSH   71 (153)
T ss_dssp             HHHHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCC--EEEEECSSCSS
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCC--eEEEEECCccc
Confidence            345566666655677789999999999 699999985443  89999999753

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.39  E-value=1.4e-06  Score=63.78  Aligned_cols=57  Identities=14%  Similarity=0.177  Sum_probs=47.7

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          14 SAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        14 ~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      ..+.++++...   .++..|||++||+|.++..+++...   +++|+|+++.+++.|++++..
T Consensus       223 ~l~~~~i~~~~---~~~~~vlD~f~GsGt~~~~a~~~g~---~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          223 ELAERLVRMFS---FVGDVVLDPFAGTGTTLIAAARWGR---RALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             HHHHHHHHHHC---CTTCEEEETTCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHcCC---eEEEEeCCHHHHHHHHHHHHH
Confidence            34555555543   6788999999999999999888764   999999999999999999876

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.38  E-value=4.5e-07  Score=68.74  Aligned_cols=86  Identities=14%  Similarity=0.041  Sum_probs=51.9

Q ss_pred             CCeEEEEcccCChhHHHHHHHc----------------CCCceEEEEeCC-----------HHHHHHHHHHHHhhccccc
Q psy5757          30 NSKVLEIGSGSGYLTNMISELM----------------NSTGQVIGIEHV-----------PQLVNSSIQNILHSNARLL   82 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~----------------~~~~~v~~~d~~-----------~~~~~~a~~~~~~~~~~~~   82 (139)
                      ..+|+|+||++|..+..++...                .|+-+|+..|+.           +...+.+++....      
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~------  126 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR------  126 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC------
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC------
Confidence            5789999999999999887761                245577788865           3333322221110      


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccc
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIP  125 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p  125 (139)
                       ..+.-++.+..-..+.+   -.+..++|+|+|+.++||+.+.
T Consensus       127 -~~~~~f~~gvpgSFy~r---lfp~~S~d~v~Ss~aLHWls~~  165 (384)
T 2efj_A          127 -KIGSCLIGAMPGSFYSR---LFPEESMHFLHSCYCLHWLSQV  165 (384)
T ss_dssp             -CTTSEEEEECCSCTTSC---CSCTTCEEEEEEESCTTBCSSS
T ss_pred             -CCCceEEEecchhhhhc---cCCCCceEEEEecceeeecCCC
Confidence             01223444332211111   2346789999999999998864

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.31  E-value=1.9e-06  Score=65.15  Aligned_cols=91  Identities=13%  Similarity=0.082  Sum_probs=51.4

Q ss_pred             CCeEEEEcccCChhHHHHHHHc--------------CCCceEEEEeCCHHHHHHHHHHHHh-hccc------c-cc-CCc
Q psy5757          30 NSKVLEIGSGSGYLTNMISELM--------------NSTGQVIGIEHVPQLVNSSIQNILH-SNAR------L-LT-DGH   86 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~--------------~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~------~-~~-~~~   86 (139)
                      ..+|+|+|||+|..+..++...              .|+-+++..|+...-....=+.+.. ..+.      . .. .+.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            5789999999999998873321              2456777878665544433333222 0000      0 00 001


Q ss_pred             -EEEEEccchhhhHHHhhhccCCceeEEecCccccccccce
Q psy5757          87 -IKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPV  126 (139)
Q Consensus        87 -i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~  126 (139)
                       +.-+.+++.   .+   ..+.+++|+|+|+.++||+.+..
T Consensus       133 f~~gvpgSFy---~r---lfP~~S~d~v~Ss~aLHWls~~p  167 (374)
T 3b5i_A          133 FVAGVPGSFY---RR---LFPARTIDFFHSAFSLHWLSQVP  167 (374)
T ss_dssp             EEEEEESCTT---SC---CSCTTCEEEEEEESCTTBCSSCC
T ss_pred             EEEecChhhh---cc---cCCCcceEEEEecceeeeeccCc
Confidence             111223321   11   13467899999999999998543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.26  E-value=6.1e-06  Score=62.35  Aligned_cols=87  Identities=14%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-h--ccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-S--NARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~--~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .+.++||-+|.|.|...+.+.+.. + .+++.+|+++..++.+++.+.. .  .......++++++.+|+.+.+.+... 
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~-~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~-  280 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLK-P-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK-  280 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTC-C-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH-
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcC-C-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh-
Confidence            456899999999999999999864 3 4899999999999999998643 1  10111235689999998886654432 


Q ss_pred             ccCCceeEEecCcc
Q psy5757         105 MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 ~~~~~~D~vi~~~~  118 (139)
                       ..++||+|+....
T Consensus       281 -~~~~yDvIIvDl~  293 (381)
T 3c6k_A          281 -EGREFDYVINDLT  293 (381)
T ss_dssp             -HTCCEEEEEEECC
T ss_pred             -ccCceeEEEECCC
Confidence             2467999998754

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.24  E-value=1.4e-06  Score=63.47  Aligned_cols=84  Identities=13%  Similarity=0.114  Sum_probs=61.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcC----CCceEEEEeCCHH--------------------------HHHHHHHHHHh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMN----STGQVIGIEHVPQ--------------------------LVNSSIQNILH-   76 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~----~~~~v~~~d~~~~--------------------------~~~~a~~~~~~-   76 (139)
                      .....|||+|+..|+.+..+++..+    +.++++++|..+.                          .++.+++++.+ 
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            3456999999999999999887653    3569999995321                          35667888877 


Q ss_pred             hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccc
Q psy5757          77 SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAE  119 (139)
Q Consensus        77 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~  119 (139)
                      ++    ..++++++.+|+.+.+++    .+.++||+|+.....
T Consensus       185 gl----~~~~I~li~Gda~etL~~----~~~~~~d~vfIDaD~  219 (282)
T 2wk1_A          185 DL----LDEQVRFLPGWFKDTLPT----APIDTLAVLRMDGDL  219 (282)
T ss_dssp             TC----CSTTEEEEESCHHHHSTT----CCCCCEEEEEECCCS
T ss_pred             CC----CcCceEEEEeCHHHHHhh----CCCCCEEEEEEcCCc
Confidence            43    127899999997765543    234679999988763

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.22  E-value=1.1e-05  Score=60.61  Aligned_cols=86  Identities=12%  Similarity=0.089  Sum_probs=66.3

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .++|++|||++||.|+-+..++..+. .+.+++.|+++.-+...++++.+ +........++.+...|... +..    .
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~-~~~----~  219 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRK-WGE----L  219 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGG-HHH----H
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhh-cch----h
Confidence            68899999999999999999998774 56899999999999999999887 43111112578888888765 321    1


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ..++||.|+...+
T Consensus       220 ~~~~fD~VLlDaP  232 (359)
T 4fzv_A          220 EGDTYDRVLVDVP  232 (359)
T ss_dssp             STTCEEEEEEECC
T ss_pred             ccccCCEEEECCc
Confidence            3467999987766

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.20  E-value=3.2e-06  Score=63.72  Aligned_cols=73  Identities=14%  Similarity=0.231  Sum_probs=54.8

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +++|+++||+||..|+++..++++..   +|+++|..+ +-..    +..       .++++++.+|+.. +.     .+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~---~V~aVD~~~-l~~~----l~~-------~~~V~~~~~d~~~-~~-----~~  267 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNM---WVYSVDNGP-MAQS----LMD-------TGQVTWLREDGFK-FR-----PT  267 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTC---EEEEECSSC-CCHH----HHT-------TTCEEEECSCTTT-CC-----CC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCC---EEEEEEhhh-cChh----hcc-------CCCeEEEeCcccc-cc-----CC
Confidence            57899999999999999999999864   999999764 1111    111       3789999999655 21     12


Q ss_pred             CCceeEEecCcccc
Q psy5757         107 FDRYDFLPHAPAES  120 (139)
Q Consensus       107 ~~~~D~vi~~~~~~  120 (139)
                      ...+|+|+|..+.+
T Consensus       268 ~~~~D~vvsDm~~~  281 (375)
T 4auk_A          268 RSNISWMVCDMVEK  281 (375)
T ss_dssp             SSCEEEEEECCSSC
T ss_pred             CCCcCEEEEcCCCC
Confidence            35799999998754

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.11  E-value=5.6e-07  Score=67.67  Aligned_cols=89  Identities=10%  Similarity=0.062  Sum_probs=56.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHH---------------cCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEcc
Q psy5757          29 ENSKVLEIGSGSGYLTNMISEL---------------MNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALG   93 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~---------------~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d   93 (139)
                      ...+|+|+||++|..+..++..               ..|+-+|+..|...+....+-+.+....    ...+.-++.+.
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~----~~~~~~f~~gv  126 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN----DVDGVCFINGV  126 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC----SCTTCEEEEEE
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc----ccCCCEEEEec
Confidence            3457999999999888776555               2456788999988777776655543300    00122333332


Q ss_pred             chhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757          94 MIKRIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        94 ~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                      .-..+.+   -.+..++|+++|+.++||+.+
T Consensus       127 pgSFy~r---lfp~~S~d~v~Ss~aLHWls~  154 (359)
T 1m6e_X          127 PGSFYGR---LFPRNTLHFIHSSYSLMWLSQ  154 (359)
T ss_dssp             ESCSSSC---CSCTTCBSCEEEESCTTBCSS
T ss_pred             chhhhhc---cCCCCceEEEEehhhhhhccc
Confidence            1111111   235678999999999999886

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.09  E-value=1.6e-05  Score=56.98  Aligned_cols=56  Identities=23%  Similarity=0.201  Sum_probs=46.8

Q ss_pred             HHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          15 AILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        15 ~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      .+.+++....   .++..|||..||+|.++.+..+...   +++|+|+++..++.+++++..
T Consensus       201 l~~~~i~~~~---~~~~~vlD~f~GsGtt~~~a~~~gr---~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          201 LIERIIRASS---NPNDLVLDCFMGSGTTAIVAKKLGR---NFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             HHHHHHHHHC---CTTCEEEESSCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHcCC---eEEEEeCCHHHHHHHHHHHHh
Confidence            4445555443   7888999999999999999888764   999999999999999999876

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.94  E-value=7.2e-06  Score=59.33  Aligned_cols=99  Identities=12%  Similarity=-0.007  Sum_probs=59.6

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ++++.+|||+|||.|.++..+++..+ ...+.++|+.-.+ .   ......  .+.. .++..+..++.. .     ..+
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl-~---~~pi~~--~~~g-~~ii~~~~~~dv-~-----~l~  137 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDG-H---EKPMNV--QSLG-WNIITFKDKTDI-H-----RLE  137 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTT-C---CCCCCC--CBTT-GGGEEEECSCCT-T-----TSC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccC-c---cccccc--CcCC-CCeEEEecccee-h-----hcC
Confidence            57888999999999999999988753 2367888876321 0   000000  0000 144445555311 1     123


Q ss_pred             CCceeEEecCcccc----ccccce-----eeeeeeccCC-CCC
Q psy5757         107 FDRYDFLPHAPAES----WMNIPV-----CINYTATMPE-GSY  139 (139)
Q Consensus       107 ~~~~D~vi~~~~~~----~~~~p~-----~~~~~~~~p~-g~~  139 (139)
                      ..++|+|+|+.+.+    |.....     .+..+.++|+ |++
T Consensus       138 ~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~F  180 (277)
T 3evf_A          138 PVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNF  180 (277)
T ss_dssp             CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEE
T ss_pred             CCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeE
Confidence            56799999998766    544432     4446777888 753

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.76  E-value=1e-05  Score=58.87  Aligned_cols=91  Identities=13%  Similarity=0.111  Sum_probs=69.3

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~   96 (139)
                      ..+.+.+..  ..+..+||+-+|||.++..+.+...   +++.+|.++..++..++++..       ..+++++..|+..
T Consensus        81 ~~yf~~l~~--~n~~~~LDlfaGSGaLgiEaLS~~d---~~vfvE~~~~a~~~L~~Nl~~-------~~~~~V~~~D~~~  148 (283)
T 2oo3_A           81 LEYISVIKQ--INLNSTLSYYPGSPYFAINQLRSQD---RLYLCELHPTEYNFLLKLPHF-------NKKVYVNHTDGVS  148 (283)
T ss_dssp             HHHHHHHHH--HSSSSSCCEEECHHHHHHHHSCTTS---EEEEECCSHHHHHHHTTSCCT-------TSCEEEECSCHHH
T ss_pred             HHHHHHHHH--hcCCCceeEeCCcHHHHHHHcCCCC---eEEEEeCCHHHHHHHHHHhCc-------CCcEEEEeCcHHH
Confidence            344555542  2345689999999999999988553   999999999999988888765       3679999999766


Q ss_pred             hhHHHhhhccCCceeEEecCccccc
Q psy5757          97 RIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        97 ~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      .+..+.  .+..++|+|+..|++..
T Consensus       149 ~L~~l~--~~~~~fdLVfiDPPYe~  171 (283)
T 2oo3_A          149 KLNALL--PPPEKRGLIFIDPSYER  171 (283)
T ss_dssp             HHHHHC--SCTTSCEEEEECCCCCS
T ss_pred             HHHHhc--CCCCCccEEEECCCCCC
Confidence            554331  12346999999999874

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.44  E-value=0.00038  Score=52.56  Aligned_cols=78  Identities=15%  Similarity=0.030  Sum_probs=56.6

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh-HHHhh-hccCC
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI-ETVEL-MMKFD  108 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~-~~~~~  108 (139)
                      .+++|+.||.|+++..+....-.  .+.++|+++.+++..+.++          ++..++++|+.+.. ..+.. .....
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~--~v~avE~d~~a~~t~~~N~----------~~~~~~~~DI~~~~~~~~~~~~~~~~   70 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFD--VKMAVEIDQHAINTHAINF----------PRSLHVQEDVSLLNAEIIKGFFKNDM   70 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCE--EEEEECSCHHHHHHHHHHC----------TTSEEECCCGGGCCHHHHHHHHCSCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCc--EEEEEeCCHHHHHHHHHhC----------CCCceEecChhhcCHHHHHhhcccCC
Confidence            58999999999999999887742  6789999999888777664          45667888877621 12211 11235


Q ss_pred             ceeEEecCcccc
Q psy5757         109 RYDFLPHAPAES  120 (139)
Q Consensus       109 ~~D~vi~~~~~~  120 (139)
                      .+|+++..++.+
T Consensus        71 ~~D~i~ggpPCQ   82 (376)
T 3g7u_A           71 PIDGIIGGPPCQ   82 (376)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CeeEEEecCCCC
Confidence            699999998844

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.41  E-value=6e-05  Score=54.64  Aligned_cols=81  Identities=19%  Similarity=0.087  Sum_probs=49.0

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .++++++|||+|||.|.++..+++..+ ...++++|+...+...+... ..     . ..++.....++.  +.    ..
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~-~~-----~-g~~ii~~~~~~d--v~----~l  152 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMR-TT-----L-GWNLIRFKDKTD--VF----NM  152 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCC-CB-----T-TGGGEEEECSCC--GG----GS
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCcccccccc-cc-----C-CCceEEeeCCcc--hh----hc
Confidence            357888999999999999999997653 34788999874321111000 00     0 123333332211  11    12


Q ss_pred             cCCceeEEecCcccc
Q psy5757         106 KFDRYDFLPHAPAES  120 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~  120 (139)
                      +..++|+|+|..+.+
T Consensus       153 ~~~~~DvVLSDmApn  167 (282)
T 3gcz_A          153 EVIPGDTLLCDIGES  167 (282)
T ss_dssp             CCCCCSEEEECCCCC
T ss_pred             CCCCcCEEEecCccC
Confidence            356799999998865

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.39  E-value=0.0005  Score=50.79  Aligned_cols=57  Identities=18%  Similarity=0.205  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          14 SAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        14 ~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      ..+.+++....   .++..|||..||+|.++.+..+...   +.+++|+++..++.+++++..
T Consensus       240 ~l~~~~i~~~~---~~~~~VlDpF~GsGtt~~aa~~~gr---~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          240 KLPEFFIRMLT---EPDDLVVDIFGGSNTTGLVAERESR---KWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             HHHHHHHHHHC---CTTCEEEETTCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHh
Confidence            44556655543   7889999999999999998887764   999999999999999999876

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.38  E-value=0.00019  Score=53.50  Aligned_cols=76  Identities=18%  Similarity=0.151  Sum_probs=54.7

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhH-HHhhhccCC
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIE-TVELMMKFD  108 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~~  108 (139)
                      ..+++|+.||.|+++..+....-.-..++++|+++.+++..+.++.          +..++.+|+.+... .+.    ..
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~----------~~~~~~~Di~~~~~~~~~----~~   67 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP----------HTQLLAKTIEGITLEEFD----RL   67 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----------TSCEECSCGGGCCHHHHH----HH
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc----------ccccccCCHHHccHhHcC----cC
Confidence            3579999999999999998875211178999999999998888763          33467788765221 121    11


Q ss_pred             ceeEEecCccc
Q psy5757         109 RYDFLPHAPAE  119 (139)
Q Consensus       109 ~~D~vi~~~~~  119 (139)
                      .+|+++..++.
T Consensus        68 ~~D~l~~gpPC   78 (343)
T 1g55_A           68 SFDMILMSPPC   78 (343)
T ss_dssp             CCSEEEECCC-
T ss_pred             CcCEEEEcCCC
Confidence            58999999983

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.32  E-value=0.00085  Score=49.55  Aligned_cols=58  Identities=16%  Similarity=0.219  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCH---HHHHHHHHHHHh
Q psy5757          13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVP---QLVNSSIQNILH   76 (139)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~---~~~~~a~~~~~~   76 (139)
                      ...+.+++....   .++..|||..||+|.++.+..+...   +.+++|+++   ..++.+++++..
T Consensus       229 ~~l~~~~i~~~~---~~~~~vlDpF~GsGtt~~aa~~~~r---~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          229 AAVIERLVRALS---HPGSTVLDFFAGSGVTARVAIQEGR---NSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             HHHHHHHHHHHS---CTTCEEEETTCTTCHHHHHHHHHTC---EEEEEESSTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHhC---CCCCEEEecCCCCCHHHHHHHHcCC---cEEEEECCccHHHHHHHHHHHHHH
Confidence            344556665553   7889999999999999999988875   999999999   999999999876

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.31  E-value=0.00076  Score=51.40  Aligned_cols=49  Identities=12%  Similarity=0.049  Sum_probs=42.5

Q ss_pred             CCCCeEEEEcccCChhHHHHH-HHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          28 NENSKVLEIGSGSGYLTNMIS-ELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~-~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      +++..++|+||+.|..+..++ +..++.++|+++|.+|...+..++++..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            678899999999999999988 4454346999999999999999998875

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.29  E-value=7.5e-05  Score=53.54  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=28.0

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHH--cCC-CceEEEEe
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISEL--MNS-TGQVIGIE   61 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~--~~~-~~~v~~~d   61 (139)
                      .++++++|||+||+.|+++..+++.  ... .+.++++|
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D  108 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGP  108 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCST
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccc
Confidence            4688999999999999999999998  421 23455555

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.28  E-value=0.0016  Score=47.67  Aligned_cols=92  Identities=12%  Similarity=0.095  Sum_probs=55.8

Q ss_pred             hhhhhcccccChH-------HHHHHHHHhcc---cCCCCCeEEEEcccC----ChhHHHHHHHcCCC-ceEEEEeCCHHH
Q psy5757           2 NLVKIGAAIGGIS-------AILTYLSIIQP---HLNENSKVLEIGSGS----GYLTNMISELMNST-GQVIGIEHVPQL   66 (139)
Q Consensus         2 ~~~~~~~~~~~~~-------~~~~~~~~l~~---~~~~~~~iLdiG~G~----G~~~~~l~~~~~~~-~~v~~~d~~~~~   66 (139)
                      |+.+||+.+.-|.       ...++...+..   -++.+++|||+|+|+    .--+ .+++++.++ +.++++|+.+- 
T Consensus        72 ~l~nyg~~~~lp~g~~~nv~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS-~VLr~~~p~g~~VVavDL~~~-  149 (344)
T 3r24_A           72 DLQNYGENAVIPKGIMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-  149 (344)
T ss_dssp             CCCCCSCCTTSCTTCCHHHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-
T ss_pred             ccccCCCCCCCCCCcEeeHHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH-HHHHHhCCCCcEEEEeeCccc-
Confidence            4567777765544       12344444421   246789999999842    2222 344444565 69999999862 


Q ss_pred             HHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcc
Q psy5757          67 VNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        67 ~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                              ..       ... .++++|... .      ....+||+|+|..+
T Consensus       150 --------~s-------da~-~~IqGD~~~-~------~~~~k~DLVISDMA  178 (344)
T 3r24_A          150 --------VS-------DAD-STLIGDCAT-V------HTANKWDLIISDMY  178 (344)
T ss_dssp             --------BC-------SSS-EEEESCGGG-E------EESSCEEEEEECCC
T ss_pred             --------cc-------CCC-eEEEccccc-c------ccCCCCCEEEecCC
Confidence                    11       123 458899543 1      12467999999876

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.24  E-value=0.00012  Score=52.00  Aligned_cols=78  Identities=14%  Similarity=0.137  Sum_probs=52.4

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEc-cchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVAL-GMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~  104 (139)
                      .+++++.|+|+||++|+++.+++...+.. +|+|+|+-..-.+.= ...+.     ++-..++|..+ |+..        
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~-~V~avdvG~~ghe~P-~~~~s-----~gwn~v~fk~gvDv~~--------  139 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVT-EVRGYTKGGPGHEEP-VPMST-----YGWNIVKLMSGKDVFY--------  139 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTTEE-EEEEECCCSTTSCCC-CCCCC-----TTTTSEEEECSCCGGG--------
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcCCC-EEEEEecCCCCccCc-chhhh-----cCcCceEEEeccceee--------
Confidence            36788999999999999999999887543 899999864211000 00111     22267889888 8522        


Q ss_pred             ccCCceeEEecCcc
Q psy5757         105 MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 ~~~~~~D~vi~~~~  118 (139)
                      .+...+|+++|...
T Consensus       140 ~~~~~~DtllcDIg  153 (267)
T 3p8z_A          140 LPPEKCDTLLCDIG  153 (267)
T ss_dssp             CCCCCCSEEEECCC
T ss_pred             cCCccccEEEEecC
Confidence            12356899988765

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.13  E-value=0.0015  Score=48.41  Aligned_cols=74  Identities=11%  Similarity=-0.059  Sum_probs=54.1

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      +.+++|+.||.|+++..+....-.  .+.++|+++.+++..+.++..          ..  ++|+.+...    . ....
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~--~v~~~e~d~~a~~t~~~N~~~----------~~--~~Di~~~~~----~-~~~~   71 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAE--CVYSNEWDKYAQEVYEMNFGE----------KP--EGDITQVNE----K-TIPD   71 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCE--EEEEECCCHHHHHHHHHHHSC----------CC--BSCGGGSCG----G-GSCC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCe--EEEEEeCCHHHHHHHHHHcCC----------CC--cCCHHHcCH----h-hCCC
Confidence            468999999999999999887642  688999999998888887643          11  577655211    1 1235


Q ss_pred             eeEEecCcccccc
Q psy5757         110 YDFLPHAPAESWM  122 (139)
Q Consensus       110 ~D~vi~~~~~~~~  122 (139)
                      +|+++..++.+-+
T Consensus        72 ~D~l~~gpPCQ~f   84 (327)
T 2c7p_A           72 HDILCAGFPCQAF   84 (327)
T ss_dssp             CSEEEEECCCTTT
T ss_pred             CCEEEECCCCCCc
Confidence            8999999885543

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.81  E-value=0.0089  Score=43.64  Aligned_cols=80  Identities=9%  Similarity=0.036  Sum_probs=56.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhH-HHhhhc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQ-VIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIE-TVELMM  105 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~-v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~  105 (139)
                      +...+++|+.||.|+++..+.+..- +.. +.++|+++.+.+..+.+.          ++..++.+|+.+... .+.   
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~-~~~~v~a~E~d~~a~~ty~~N~----------~~~~~~~~DI~~i~~~~i~---   79 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGI-QVDRYIASEVCEDSITVGMVRH----------QGKIMYVGDVRSVTQKHIQ---   79 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTB-CEEEEEEECCCHHHHHHHHHHT----------TTCEEEECCGGGCCHHHHH---
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCC-ccceEEEEECCHHHHHHHHHhC----------CCCceeCCChHHccHHHhc---
Confidence            4556899999999999999988763 223 699999998877666553          344577888776222 221   


Q ss_pred             cCCceeEEecCccccc
Q psy5757         106 KFDRYDFLPHAPAESW  121 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~  121 (139)
                      ....+|+++..++.+-
T Consensus        80 ~~~~~Dll~ggpPCQ~   95 (295)
T 2qrv_A           80 EWGPFDLVIGGSPCND   95 (295)
T ss_dssp             HTCCCSEEEECCCCGG
T ss_pred             ccCCcCEEEecCCCcc
Confidence            1246899999887443

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.79  E-value=0.0043  Score=45.49  Aligned_cols=72  Identities=17%  Similarity=0.117  Sum_probs=52.5

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCce
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRY  110 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~  110 (139)
                      ++++|+-||-|+++..+-+..-.  .+.++|+++.+.+.-+.+.          + -+++.+|+.+ +.   . .....+
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~--~v~a~e~d~~a~~ty~~N~----------~-~~~~~~DI~~-i~---~-~~~~~~   62 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFR--IICANEYDKSIWKTYESNH----------S-AKLIKGDISK-IS---S-DEFPKC   62 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCE--EEEEEECCTTTHHHHHHHC----------C-SEEEESCGGG-CC---G-GGSCCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCE--EEEEEeCCHHHHHHHHHHC----------C-CCcccCChhh-CC---H-hhCCcc
Confidence            57999999999999998876632  6789999998877766653          2 2467788655 21   1 123468


Q ss_pred             eEEecCcccc
Q psy5757         111 DFLPHAPAES  120 (139)
Q Consensus       111 D~vi~~~~~~  120 (139)
                      |+++..++.+
T Consensus        63 D~l~ggpPCQ   72 (331)
T 3ubt_Y           63 DGIIGGPPSQ   72 (331)
T ss_dssp             SEEECCCCGG
T ss_pred             cEEEecCCCC
Confidence            9999988744

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.58  E-value=0.0045  Score=45.95  Aligned_cols=76  Identities=16%  Similarity=0.079  Sum_probs=53.0

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhH-HHhhhccCCc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIE-TVELMMKFDR  109 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~~~  109 (139)
                      .+++|+.||.|+++..+.+..-.--.+.++|+++.+.+.-+.++.          ...++.+|+.+.-. .+    +...
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~----------~~~~~~~DI~~~~~~~~----~~~~   69 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP----------ETNLLNRNIQQLTPQVI----KKWN   69 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT----------TSCEECCCGGGCCHHHH----HHTT
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC----------CCceeccccccCCHHHh----ccCC
Confidence            479999999999999998875211268899999988887777653          33456778665211 12    1125


Q ss_pred             eeEEecCcccc
Q psy5757         110 YDFLPHAPAES  120 (139)
Q Consensus       110 ~D~vi~~~~~~  120 (139)
                      +|+++..++.+
T Consensus        70 ~D~l~ggpPCQ   80 (333)
T 4h0n_A           70 VDTILMSPPCQ   80 (333)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCEEEecCCCc
Confidence            89999888744

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.47  E-value=0.0048  Score=45.72  Aligned_cols=80  Identities=13%  Similarity=-0.014  Sum_probs=54.8

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceE-EEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh-HHHhhhc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQV-IGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI-ETVELMM  105 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v-~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~  105 (139)
                      ....+++|+.||.|+++..+.+..-.--.+ .++|+++.+.+..+.++..          . ++.+|+.+.- ..+.   
T Consensus         8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~----------~-~~~~DI~~~~~~~i~---   73 (327)
T 3qv2_A            8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE----------E-VQVKNLDSISIKQIE---   73 (327)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC----------C-CBCCCTTTCCHHHHH---
T ss_pred             CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC----------C-cccCChhhcCHHHhc---
Confidence            345689999999999999998875211156 7999999988887777633          1 4567765521 1221   


Q ss_pred             cCCceeEEecCcccccc
Q psy5757         106 KFDRYDFLPHAPAESWM  122 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~  122 (139)
                       ...+|+++..++.+-+
T Consensus        74 -~~~~Dil~ggpPCQ~f   89 (327)
T 3qv2_A           74 -SLNCNTWFMSPPCQPY   89 (327)
T ss_dssp             -HTCCCEEEECCCCTTC
T ss_pred             -cCCCCEEEecCCccCc
Confidence             1258999988884433

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.30  E-value=0.0036  Score=45.78  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCH
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVP   64 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~   64 (139)
                      ++++..|||+||++|+++.+++...+.. +|+|+|+-.
T Consensus        92 l~~~~~VlDLGaapGGwsq~~~~~~gv~-~V~avdvG~  128 (321)
T 3lkz_A           92 LEPVGKVIDLGCGRGGWCYYMATQKRVQ-EVRGYTKGG  128 (321)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHTTCTTEE-EEEEECCCS
T ss_pred             CCCCCEEEEeCCCCCcHHHHHHhhcCCC-EEEEEEcCC
Confidence            5788899999999999999888877543 899999864

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.06  E-value=0.01  Score=43.32  Aligned_cols=38  Identities=21%  Similarity=0.221  Sum_probs=31.5

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCH
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVP   64 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~   64 (139)
                      .++++++|||+||+.|+++..+++..+ -..|.++|+..
T Consensus        78 l~~~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~  115 (300)
T 3eld_A           78 YLRITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGI  115 (300)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEecc
Confidence            467889999999999999999998653 23788999864

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=95.85  E-value=0.014  Score=45.46  Aligned_cols=80  Identities=11%  Similarity=0.034  Sum_probs=54.7

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhH----------
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIE----------   99 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----------   99 (139)
                      ..+++|+.||.|+++..+.+....  .+.++|+++.+.+.-+.++..       .++..++.+|+.+...          
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~--~v~avE~d~~A~~ty~~N~~~-------~p~~~~~~~DI~~i~~~~~~~~~~~~  158 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQ--CVFTSEWNKHAVRTYKANHYC-------DPATHHFNEDIRDITLSHQEGVSDEA  158 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEE--EEEEECCCHHHHHHHHHHSCC-------CTTTCEEESCTHHHHCTTCTTSCHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCE--EEEEEeCCHHHHHHHHHhccc-------CCCcceeccchhhhhhccccccchhh
Confidence            358999999999999999876532  689999999888777766532       1344567788665210          


Q ss_pred             ---HHhhhccCCceeEEecCcccc
Q psy5757         100 ---TVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus       100 ---~~~~~~~~~~~D~vi~~~~~~  120 (139)
                         .+.  .....+|+++..++.+
T Consensus       159 ~~~~i~--~~~~~~Dvl~gGpPCQ  180 (482)
T 3me5_A          159 AAEHIR--QHIPEHDVLLAGFPCQ  180 (482)
T ss_dssp             HHHHHH--HHSCCCSEEEEECCCC
T ss_pred             HHhhhh--hcCCCCCEEEecCCCc
Confidence               000  1124589999888744

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=94.71  E-value=0.11  Score=42.51  Aligned_cols=46  Identities=13%  Similarity=0.071  Sum_probs=35.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCC---C-ceEEEEeCCHHHHHHHHHHH
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNS---T-GQVIGIEHVPQLVNSSIQNI   74 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~---~-~~v~~~d~~~~~~~~a~~~~   74 (139)
                      +..+++|+.||-|+++..+.+....   . -.+.++|+++.+++--+.|.
T Consensus       211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            3458999999999999988776410   0 06789999999888777765

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=94.49  E-value=0.48  Score=33.63  Aligned_cols=83  Identities=20%  Similarity=0.311  Sum_probs=54.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~  103 (139)
                      +++.+|-=|+++| .+..+++.+ ...++|+.+|.+++.++.+.+.+...      -.++..+..|+.+.  .+++.  .
T Consensus         6 ~gKvalVTGas~G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~------g~~~~~~~~Dvt~~~~v~~~~~~~   78 (254)
T 4fn4_A            6 KNKVVIVTGAGSG-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM------GKEVLGVKADVSKKKDVEEFVRRT   78 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence            4567776665554 455555544 22459999999999988888777661      14688888998862  22221  1


Q ss_pred             hccCCceeEEecCcc
Q psy5757         104 MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~  118 (139)
                      ...++++|+++.|.-
T Consensus        79 ~~~~G~iDiLVNNAG   93 (254)
T 4fn4_A           79 FETYSRIDVLCNNAG   93 (254)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCc
Confidence            224578999998875

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=94.20  E-value=0.21  Score=42.23  Aligned_cols=80  Identities=15%  Similarity=0.051  Sum_probs=53.6

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhh------
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVEL------  103 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~------  103 (139)
                      ..+++|+.||.|+++..+.+..-. -.+.++|+++.+.+.-+.+.          ++..++.+|+.+.......      
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~-~vv~avEid~~A~~ty~~N~----------p~~~~~~~DI~~l~~~~~~~di~~~  608 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGIS-DTLWAIEMWDPAAQAFRLNN----------PGSTVFTEDCNILLKLVMAGETTNS  608 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSE-EEEEEECSSHHHHHHHHHHC----------TTSEEECSCHHHHHHHHHHTCSBCT
T ss_pred             CCeEEEeccCccHHHHHHHHCCCC-ceEEEEECCHHHHHHHHHhC----------CCCccccccHHHHhhhccchhhhhh
Confidence            348999999999999999887631 16889999998887666653          4556777775442111100      


Q ss_pred             ---hc-cCCceeEEecCcccc
Q psy5757         104 ---MM-KFDRYDFLPHAPAES  120 (139)
Q Consensus       104 ---~~-~~~~~D~vi~~~~~~  120 (139)
                         .. ..+.+|+++..++-+
T Consensus       609 ~~~~lp~~~~vDll~GGpPCQ  629 (1002)
T 3swr_A          609 RGQRLPQKGDVEMLCGGPPCQ  629 (1002)
T ss_dssp             TCCBCCCTTTCSEEEECCCCT
T ss_pred             hhhhcccCCCeeEEEEcCCCc
Confidence               01 123589999888744

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=93.89  E-value=0.41  Score=36.20  Aligned_cols=44  Identities=20%  Similarity=0.250  Sum_probs=33.2

Q ss_pred             CeEEEEcccCChhHHHHHHHcC------CCceEEEEeCCHHHHHHHHHHH
Q psy5757          31 SKVLEIGSGSGYLTNMISELMN------STGQVIGIEHVPQLVNSSIQNI   74 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~------~~~~v~~~d~~~~~~~~a~~~~   74 (139)
                      -.|+|+|+|+|.+..-+.+...      ...+++.+|+|+...+.=++.+
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L  131 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL  131 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence            3699999999999888876542      2348999999987766444444

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.80  E-value=0.52  Score=36.33  Aligned_cols=88  Identities=15%  Similarity=0.126  Sum_probs=60.3

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      +......+...-++-++++-+|  .|..+..+++.+....++.-+|.+++.++.+.+.+          ++..+++||++
T Consensus       221 i~~~~~~~g~~~~~~~~v~I~G--gG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l----------~~~~Vi~GD~t  288 (461)
T 4g65_A          221 IRSVMSELQRLEKPYRRIMIVG--GGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEEL----------ENTIVFCGDAA  288 (461)
T ss_dssp             HHHHHHHTTGGGSCCCEEEEEC--CSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHC----------TTSEEEESCTT
T ss_pred             HHHHHHhhccccccccEEEEEc--chHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHC----------CCceEEecccc
Confidence            5555555543334556787765  56677888888866679999999998888776654          66789999988


Q ss_pred             hhhHHHhhhccCCceeEEecCc
Q psy5757          96 KRIETVELMMKFDRYDFLPHAP  117 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~  117 (139)
                      + ..-+ .++.-+..|++++.-
T Consensus       289 d-~~~L-~ee~i~~~D~~ia~T  308 (461)
T 4g65_A          289 D-QELL-TEENIDQVDVFIALT  308 (461)
T ss_dssp             C-HHHH-HHTTGGGCSEEEECC
T ss_pred             c-hhhH-hhcCchhhcEEEEcc
Confidence            7 2222 333456678887643

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=93.73  E-value=1.1  Score=32.96  Aligned_cols=95  Identities=15%  Similarity=0.105  Sum_probs=59.8

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hc-cccc--------------cCCcEEEEE
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SN-ARLL--------------TDGHIKFVA   91 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~-~~~~--------------~~~~i~~~~   91 (139)
                      .+...|+.+|||.......+....+ ..+++-+|. |+.++.-++.+.. +. +..+              ..++.+++.
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~-~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~  173 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA  173 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCC-CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence            3557899999999999999887653 345555555 6777777766655 21 0001              126789999


Q ss_pred             ccchh-hh-HHHhhhc-cCCceeEEecCcccccccc
Q psy5757          92 LGMIK-RI-ETVELMM-KFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        92 ~d~~~-~~-~~~~~~~-~~~~~D~vi~~~~~~~~~~  124 (139)
                      .|+.+ .+ ..+.... ..+...++++=.+++++..
T Consensus       174 ~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~  209 (334)
T 1rjd_A          174 CDLNDITETTRLLDVCTKREIPTIVISECLLCYMHN  209 (334)
T ss_dssp             CCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCH
T ss_pred             cCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCH
Confidence            99886 22 2221122 2245677777777776653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.68  E-value=0.61  Score=29.27  Aligned_cols=73  Identities=7%  Similarity=0.009  Sum_probs=45.1

Q ss_pred             CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      .++++-+|+  |..+..+++.+. ...+|+.+|.+++.++.+++            ..+.++.+|..+ ...+ .....+
T Consensus         6 ~~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~------------~~~~~~~gd~~~-~~~l-~~~~~~   69 (141)
T 3llv_A            6 RYEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED------------EGFDAVIADPTD-ESFY-RSLDLE   69 (141)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH------------TTCEEEECCTTC-HHHH-HHSCCT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH------------CCCcEEECCCCC-HHHH-HhCCcc
Confidence            357888887  556776666552 13389999999887665543            235677788765 2222 122334


Q ss_pred             ceeEEecCcc
Q psy5757         109 RYDFLPHAPA  118 (139)
Q Consensus       109 ~~D~vi~~~~  118 (139)
                      .+|+++....
T Consensus        70 ~~d~vi~~~~   79 (141)
T 3llv_A           70 GVSAVLITGS   79 (141)
T ss_dssp             TCSEEEECCS
T ss_pred             cCCEEEEecC
Confidence            6788776554

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=93.60  E-value=0.015  Score=53.33  Aligned_cols=97  Identities=18%  Similarity=0.136  Sum_probs=48.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCC----CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNS----TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVEL  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~----~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  103 (139)
                      .+..+|||+|+|+|..+..+.+....    ..+.+..|+++...+.++++++.        -+++.-..|..+ .    .
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~--------~di~~~~~d~~~-~----~ 1305 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ--------LHVTQGQWDPAN-P----A 1305 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH--------HTEEEECCCSSC-C----C
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh--------cccccccccccc-c----c
Confidence            34679999999999988887776542    13677889998877777776644        112221112111 0    0


Q ss_pred             hccCCceeEEecCcccccccc---ceeeeeeeccCCC
Q psy5757         104 MMKFDRYDFLPHAPAESWMNI---PVCINYTATMPEG  137 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~~~~~~---p~~~~~~~~~p~g  137 (139)
                      ......||+|+...++|--.+   -+......++|+|
T Consensus      1306 ~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G 1342 (2512)
T 2vz8_A         1306 PGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGG 1342 (2512)
T ss_dssp             C-----CCEEEEECC--------------------CC
T ss_pred             cCCCCceeEEEEcccccccccHHHHHHHHHHhcCCCc
Confidence            001245999999998884332   2333345566666

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=93.11  E-value=0.74  Score=32.13  Aligned_cols=85  Identities=14%  Similarity=0.189  Sum_probs=52.7

Q ss_pred             CCCeEEEEcc-cCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGS-GSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~-G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|-.|+ |+| .+..+++.+ ....+|+.++.+++.++.+.+.+..     ....++.++..|+.+.  +..+.. 
T Consensus        21 ~~k~vlITGasg~G-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~~Dl~~~~~v~~~~~~   94 (266)
T 3o38_A           21 KGKVVLVTAAAGTG-IGSTTARRALLEGADVVISDYHERRLGETRDQLAD-----LGLGRVEAVVCDVTSTEAVDALITQ   94 (266)
T ss_dssp             TTCEEEESSCSSSS-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT-----TCSSCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCc-hHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHh-----cCCCceEEEEeCCCCHHHHHHHHHH
Confidence            4667887776 444 344444433 1234899999998888777776655     1125789999998762  222111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+++|++|.|...
T Consensus        95 ~~~~~g~id~li~~Ag~  111 (266)
T 3o38_A           95 TVEKAGRLDVLVNNAGL  111 (266)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHhCCCcEEEECCCc
Confidence             1123578999998864

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=93.03  E-value=0.51  Score=34.53  Aligned_cols=81  Identities=15%  Similarity=0.195  Sum_probs=52.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCC--Cc-eEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNS--TG-QVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~--~~-~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      ..+++||-.| |+|..+..+++.+-.  .. +|++++.++.......+.+..        .++.++.+|+.+ ...+..-
T Consensus        19 ~~~k~vlVTG-atG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~--------~~v~~~~~Dl~d-~~~l~~~   88 (344)
T 2gn4_A           19 LDNQTILITG-GTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFND--------PRMRFFIGDVRD-LERLNYA   88 (344)
T ss_dssp             TTTCEEEEET-TTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCC--------TTEEEEECCTTC-HHHHHHH
T ss_pred             hCCCEEEEEC-CCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcC--------CCEEEEECCCCC-HHHHHHH
Confidence            3457887655 678888888776522  22 899999987665554443322        578899999876 3332222


Q ss_pred             ccCCceeEEecCcccc
Q psy5757         105 MKFDRYDFLPHAPAES  120 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~  120 (139)
                        .+.+|+||.+....
T Consensus        89 --~~~~D~Vih~Aa~~  102 (344)
T 2gn4_A           89 --LEGVDICIHAAALK  102 (344)
T ss_dssp             --TTTCSEEEECCCCC
T ss_pred             --HhcCCEEEECCCCC
Confidence              24589999887643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.02  E-value=0.44  Score=30.15  Aligned_cols=71  Identities=15%  Similarity=0.157  Sum_probs=43.4

Q ss_pred             CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      .+++-+|+  |..+..+++.+. ....++++|.+++.++.+++            ..+.++.+|..+ ...+ .......
T Consensus         8 ~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~------------~g~~~i~gd~~~-~~~l-~~a~i~~   71 (140)
T 3fwz_A            8 NHALLVGY--GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE------------RGVRAVLGNAAN-EEIM-QLAHLEC   71 (140)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH------------TTCEEEESCTTS-HHHH-HHTTGGG
T ss_pred             CCEEEECc--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------cCCCEEECCCCC-HHHH-HhcCccc
Confidence            46777776  556666655542 13389999999988776653            245678888765 2212 1223345


Q ss_pred             eeEEecCc
Q psy5757         110 YDFLPHAP  117 (139)
Q Consensus       110 ~D~vi~~~  117 (139)
                      .|+++...
T Consensus        72 ad~vi~~~   79 (140)
T 3fwz_A           72 AKWLILTI   79 (140)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEEC
Confidence            78777544

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=92.94  E-value=0.15  Score=41.08  Aligned_cols=87  Identities=14%  Similarity=-0.029  Sum_probs=51.3

Q ss_pred             CCeEEEEcccCChhHHHHHHHcC------C-----CceEEEEeC---CHHHHHHHHH-----------HHHhhc------
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMN------S-----TGQVIGIEH---VPQLVNSSIQ-----------NILHSN------   78 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~------~-----~~~v~~~d~---~~~~~~~a~~-----------~~~~~~------   78 (139)
                      .-+|+|+|.|+|.....+.+.+.      |     ..+++.+|.   +.+.+..+-.           .+..+-      
T Consensus        59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  138 (689)
T 3pvc_A           59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC  138 (689)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred             ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence            34899999999998888877541      1     257899998   4444443221           111100      


Q ss_pred             -cccccC--CcEEEEEccchhhhHHHhhhccCCceeEEecCc
Q psy5757          79 -ARLLTD--GHIKFVALGMIKRIETVELMMKFDRYDFLPHAP  117 (139)
Q Consensus        79 -~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~  117 (139)
                       |..+..  -++++..+|+.+.++++... ...++|.++...
T Consensus       139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~-~~~~~da~flD~  179 (689)
T 3pvc_A          139 HRILLADGAITLDLWFGDVNTLLPTLDDS-LNNQVDAWFLDG  179 (689)
T ss_dssp             EEEEETTTTEEEEEEESCHHHHGGGCCGG-GTTCEEEEEECS
T ss_pred             eEEEecCCcEEEEEEccCHHHHHhhcccc-cCCceeEEEECC
Confidence             111211  25678889987766543211 135799998854

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=92.90  E-value=0.95  Score=31.72  Aligned_cols=87  Identities=8%  Similarity=0.014  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcccCC-hhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh-
Q psy5757          28 NENSKVLEIGSGSG-YLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE-  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G-~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~-  102 (139)
                      .+++.+|--|++++ +.+..+++.+ ...++|+..+.+++..+.+.+.+..     ....++.++..|+.+.  ..++. 
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~Dv~~~~~v~~~~~   78 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQ-----LNQPEAHLYQIDVQSDEEVINGFE   78 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGG-----GTCSSCEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----cCCCcEEEEEccCCCHHHHHHHHH
Confidence            46788888886442 4455555443 1234899999998888888777766     1125788888888762  11111 


Q ss_pred             -hhccCCceeEEecCccc
Q psy5757         103 -LMMKFDRYDFLPHAPAE  119 (139)
Q Consensus       103 -~~~~~~~~D~vi~~~~~  119 (139)
                       ....++++|+++.|...
T Consensus        79 ~~~~~~G~iD~lvnnAg~   96 (256)
T 4fs3_A           79 QIGKDVGNIDGVYHSIAF   96 (256)
T ss_dssp             HHHHHHCCCSEEEECCCC
T ss_pred             HHHHHhCCCCEEEecccc
Confidence             11235689999988653

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=92.79  E-value=1.7  Score=30.33  Aligned_cols=84  Identities=10%  Similarity=0.147  Sum_probs=53.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--  102 (139)
                      ..++.+|--|++.| .+..+++.+ ....+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+.  
T Consensus         9 l~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~   81 (264)
T 3ucx_A            9 LTDKVVVISGVGPA-LGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT------GRRALSVGTDITDDAQVAHLVDE   81 (264)
T ss_dssp             TTTCEEEEESCCTT-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHH
Confidence            35677887776554 445554444 12348999999988887777666551      14788888898762  22211  


Q ss_pred             hhccCCceeEEecCcc
Q psy5757         103 LMMKFDRYDFLPHAPA  118 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~  118 (139)
                      ....++.+|+++.|..
T Consensus        82 ~~~~~g~id~lv~nAg   97 (264)
T 3ucx_A           82 TMKAYGRVDVVINNAF   97 (264)
T ss_dssp             HHHHTSCCSEEEECCC
T ss_pred             HHHHcCCCcEEEECCC
Confidence            1123467999999874

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=92.77  E-value=2.2  Score=31.44  Aligned_cols=46  Identities=15%  Similarity=0.302  Sum_probs=36.0

Q ss_pred             cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++++||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH
Confidence            367899999999875 6777788877652 269999999988887754

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=92.39  E-value=1.1  Score=31.21  Aligned_cols=86  Identities=10%  Similarity=0.026  Sum_probs=52.5

Q ss_pred             CCCCeEEEEccc-CChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh
Q psy5757          28 NENSKVLEIGSG-SGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL  103 (139)
Q Consensus        28 ~~~~~iLdiG~G-~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~  103 (139)
                      .+++++|-.|++ +|..+..+++.+. ...+|+.++.++...+.+++....       ..++.++..|+.+.  +..+..
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~   84 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAE-------FGSELVFPCDVADDAQIDALFA   84 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH-------TTCCCEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHH-------cCCcEEEECCCCCHHHHHHHHH
Confidence            567788888874 3666666666552 234899998886555544444333       13567888888762  222111


Q ss_pred             --hccCCceeEEecCcccc
Q psy5757         104 --MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 --~~~~~~~D~vi~~~~~~  120 (139)
                        ....+.+|++|.|....
T Consensus        85 ~~~~~~g~id~lv~nAg~~  103 (271)
T 3ek2_A           85 SLKTHWDSLDGLVHSIGFA  103 (271)
T ss_dssp             HHHHHCSCEEEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCccC
Confidence              11345799999987643

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=92.33  E-value=0.14  Score=39.26  Aligned_cols=46  Identities=15%  Similarity=0.248  Sum_probs=35.1

Q ss_pred             CCeEEEEcccCChhHHHHHHHcC----CCceEEEEeCCHHHHHHHHHHHH
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMN----STGQVIGIEHVPQLVNSSIQNIL   75 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~----~~~~v~~~d~~~~~~~~a~~~~~   75 (139)
                      .-.|+|+|+|+|.+..-+.+.+.    ...+++-+|+|+.+.+.=++.+.
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            46899999999998888876552    12379999999887766666554

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=92.31  E-value=2.5  Score=31.07  Aligned_cols=45  Identities=18%  Similarity=0.311  Sum_probs=35.3

Q ss_pred             cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++.+||-+|+|. |..+..+++..+  +++++++.+++.++.+++
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~  231 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAFA  231 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHHH
Confidence            367899999999764 667777777765  399999999888877655

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=92.30  E-value=0.66  Score=32.89  Aligned_cols=86  Identities=19%  Similarity=0.097  Sum_probs=55.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--  102 (139)
                      .+++.+|--|+ +++.+..+++.+ ...++|+..|.+++.++.+.+.+...      -.++..+..|+.+.  .+.+.  
T Consensus         7 L~gKvalVTGa-s~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~------g~~~~~~~~Dv~~~~~v~~~~~~   79 (255)
T 4g81_D            7 LTGKTALVTGS-ARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK------GYDAHGVAFDVTDELAIEAAFSK   79 (255)
T ss_dssp             CTTCEEEETTC-SSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT------TCCEEECCCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeeCCCHHHHHHHHHH
Confidence            35666666554 455566666655 22459999999999888877777651      14677888888762  22221  


Q ss_pred             hhccCCceeEEecCcccc
Q psy5757         103 LMMKFDRYDFLPHAPAES  120 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~~  120 (139)
                      ....++++|+++.|.-..
T Consensus        80 ~~~~~G~iDiLVNNAG~~   97 (255)
T 4g81_D           80 LDAEGIHVDILINNAGIQ   97 (255)
T ss_dssp             HHHTTCCCCEEEECCCCC
T ss_pred             HHHHCCCCcEEEECCCCC
Confidence            122467899999988643

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=92.30  E-value=1.2  Score=31.28  Aligned_cols=83  Identities=17%  Similarity=0.163  Sum_probs=52.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhhh
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVELM  104 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~~  104 (139)
                      .++.+|--| |+|..+..+++.+ ....+|+.++.+++.++.+.+.+.. ..     ..++.++..|..+.  +..+.. 
T Consensus         9 ~~k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~D~~~~~~~~~~~~-   81 (267)
T 3t4x_A            9 KGKTALVTG-STAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYP-----DAILQPVVADLGTEQGCQDVIE-   81 (267)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCT-----TCEEEEEECCTTSHHHHHHHHH-
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCC-----CceEEEEecCCCCHHHHHHHHH-
Confidence            456777665 4566666666655 2234899999998877776666554 21     24677788887752  222222 


Q ss_pred             ccCCceeEEecCccc
Q psy5757         105 MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~  119 (139)
                       ..+.+|+++.|...
T Consensus        82 -~~g~id~lv~nAg~   95 (267)
T 3t4x_A           82 -KYPKVDILINNLGI   95 (267)
T ss_dssp             -HCCCCSEEEECCCC
T ss_pred             -hcCCCCEEEECCCC
Confidence             34679999988763

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=92.26  E-value=1.1  Score=26.76  Aligned_cols=73  Identities=12%  Similarity=0.110  Sum_probs=45.4

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCC-C-ceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNS-T-GQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~-~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++|+-+|+  |..+..+++.+.. . .+++.++.+++..+.+.    .        .++.++..|..+ ...+...  .
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~--------~~~~~~~~d~~~-~~~~~~~--~   67 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R--------MGVATKQVDAKD-EAGLAKA--L   67 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T--------TTCEEEECCTTC-HHHHHHH--T
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h--------CCCcEEEecCCC-HHHHHHH--H
Confidence            467888887  7777776665521 2 48999999987665543    2        345567777654 2222211  2


Q ss_pred             CceeEEecCccc
Q psy5757         108 DRYDFLPHAPAE  119 (139)
Q Consensus       108 ~~~D~vi~~~~~  119 (139)
                      ..+|+|+.....
T Consensus        68 ~~~d~vi~~~~~   79 (118)
T 3ic5_A           68 GGFDAVISAAPF   79 (118)
T ss_dssp             TTCSEEEECSCG
T ss_pred             cCCCEEEECCCc
Confidence            458998877653

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=92.20  E-value=1.2  Score=31.22  Aligned_cols=85  Identities=13%  Similarity=0.188  Sum_probs=53.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|--| |+|..+..+++.+. ...+|+.++.+++.++.+.+.+..     ....++.++..|+.+.  +..+..  
T Consensus         9 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (262)
T 3pk0_A            9 QGRSVVVTG-GTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQ-----LGSGKVIGVQTDVSDRAQCDALAGRA   82 (262)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT-----TSSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----hCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence            456666655 45666666666552 234899999998888777766655     1125788899998762  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        83 ~~~~g~id~lvnnAg~   98 (262)
T 3pk0_A           83 VEEFGGIDVVCANAGV   98 (262)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHHhCCCCEEEECCCC
Confidence            1123579999988763

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=92.16  E-value=0.95  Score=32.04  Aligned_cols=84  Identities=10%  Similarity=0.116  Sum_probs=54.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh---hHHHhh
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR---IETVEL  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~---~~~~~~  103 (139)
                      .++.+|-.|+ +|+.+..+++.+ ....+|+.++.++...+.+.+.+.. +      ..++.++..|+.+.   +..+..
T Consensus        11 ~~k~vlITGa-s~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~Dl~~~~~~v~~~~~   83 (311)
T 3o26_A           11 KRRCAVVTGG-NKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN------HENVVFHQLDVTDPIATMSSLAD   83 (311)
T ss_dssp             -CCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------CCSEEEEECCTTSCHHHHHHHHH
T ss_pred             CCcEEEEecC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CCceEEEEccCCCcHHHHHHHHH
Confidence            4566776654 566666666655 2244999999998887777776655 2      25788999888763   122111


Q ss_pred             --hccCCceeEEecCccc
Q psy5757         104 --MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 --~~~~~~~D~vi~~~~~  119 (139)
                        ....+.+|++|.|...
T Consensus        84 ~~~~~~g~iD~lv~nAg~  101 (311)
T 3o26_A           84 FIKTHFGKLDILVNNAGV  101 (311)
T ss_dssp             HHHHHHSSCCEEEECCCC
T ss_pred             HHHHhCCCCCEEEECCcc
Confidence              1123579999999864

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=92.15  E-value=1.5  Score=30.47  Aligned_cols=85  Identities=11%  Similarity=0.122  Sum_probs=52.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      ..++.+|--|+ +|..+..+++.+- ...+|+.++.+++..+.+.+.+...      ..++.++..|+.+.  +..+.. 
T Consensus        10 l~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~~~   82 (256)
T 3gaf_A           10 LNDAVAIVTGA-AAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA------GGKAIGLECNVTDEQHREAVIKA   82 (256)
T ss_dssp             CTTCEEEECSC-SSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHHH
Confidence            35567776665 4555555555441 1238999999988877776666551      15788888888762  121111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|+++.|...
T Consensus        83 ~~~~~g~id~lv~nAg~   99 (256)
T 3gaf_A           83 ALDQFGKITVLVNNAGG   99 (256)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence             1123578999998764

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=92.05  E-value=0.15  Score=37.42  Aligned_cols=103  Identities=18%  Similarity=0.179  Sum_probs=53.0

Q ss_pred             CeEEEEcccCChhHHHHHH---HcCCCc--eEEEEeCCH--------HHHHHHHHHHHhhccccccCC--cEEEEEccch
Q psy5757          31 SKVLEIGSGSGYLTNMISE---LMNSTG--QVIGIEHVP--------QLVNSSIQNILHSNARLLTDG--HIKFVALGMI   95 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~---~~~~~~--~v~~~d~~~--------~~~~~a~~~~~~~~~~~~~~~--~i~~~~~d~~   95 (139)
                      -+|+|+|-|+|........   ...+..  +.+.+|..+        +......+.+..... ++...  .+++..+|+.
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p-~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVP-EYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCS-EEECSSEEEEEEESCHH
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCc-cccCCcEEEEEEechHH
Confidence            4799999999986554432   233444  456777421        111222221211000 01123  3567789977


Q ss_pred             hhhHHHhhhccCCceeEEecCcc------ccccccceeeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPA------ESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~------~~~~~~p~~~~~~~~~p~g~  138 (139)
                      +.++++    ...++|+++...-      -.|-.+.....++...|+|.
T Consensus       177 ~~l~~l----~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~  221 (308)
T 3vyw_A          177 KRIKEV----ENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGY  221 (308)
T ss_dssp             HHGGGC----CSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEE
T ss_pred             HHHhhh----cccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcE
Confidence            655543    2346999987651      22333334445566666553

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=91.91  E-value=1.3  Score=32.84  Aligned_cols=72  Identities=11%  Similarity=0.109  Sum_probs=45.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      ..++|+-+||  |..+..+++.+.....++..|.+...++.+++             .+..+..|+.+ ...+...  ..
T Consensus        15 ~~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~-------------~~~~~~~d~~d-~~~l~~~--~~   76 (365)
T 3abi_A           15 RHMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE-------------FATPLKVDASN-FDKLVEV--MK   76 (365)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT-------------TSEEEECCTTC-HHHHHHH--HT
T ss_pred             CccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc-------------cCCcEEEecCC-HHHHHHH--Hh
Confidence            4578999988  77777777777555689999999776655422             33445556554 2322221  23


Q ss_pred             ceeEEecCcc
Q psy5757         109 RYDFLPHAPA  118 (139)
Q Consensus       109 ~~D~vi~~~~  118 (139)
                      ..|+|++..+
T Consensus        77 ~~DvVi~~~p   86 (365)
T 3abi_A           77 EFELVIGALP   86 (365)
T ss_dssp             TCSEEEECCC
T ss_pred             CCCEEEEecC
Confidence            4788887665

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=91.89  E-value=1.1  Score=31.20  Aligned_cols=83  Identities=14%  Similarity=0.132  Sum_probs=53.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|++ |..+..+++.+ ....+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+..  
T Consensus         6 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~   78 (252)
T 3h7a_A            6 RNATVAVIGAG-DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA------GGRIVARSLDARNEDEVTAFLNAA   78 (252)
T ss_dssp             CSCEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECcCCCHHHHHHHHHHH
Confidence            45677776655 55555655554 12348999999988887777766551      15788889998762  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ... +.+|+++.|...
T Consensus        79 ~~~-g~id~lv~nAg~   93 (252)
T 3h7a_A           79 DAH-APLEVTIFNVGA   93 (252)
T ss_dssp             HHH-SCEEEEEECCCC
T ss_pred             Hhh-CCceEEEECCCc
Confidence            112 579999998864

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=91.86  E-value=2.5  Score=30.88  Aligned_cols=45  Identities=13%  Similarity=0.323  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          27 LNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        27 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      ++++.+||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~  209 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGA-GRIFAVGSRKHCCDIALE  209 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTC-SSEEEECCCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH
Confidence            68899999999763 6667777776542 279999999888777765

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=91.67  E-value=1.5  Score=31.37  Aligned_cols=82  Identities=12%  Similarity=0.102  Sum_probs=51.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--  102 (139)
                      .+++.+|--|+++| .+..+++.+ ...++|+..+.+++.++.+.+.+.         .+...+..|+.+.  .+++.  
T Consensus        27 L~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g---------~~~~~~~~Dv~~~~~v~~~~~~   96 (273)
T 4fgs_A           27 LNAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG---------GGAVGIQADSANLAELDRLYEK   96 (273)
T ss_dssp             TTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------TTCEEEECCTTCHHHHHHHHHH
T ss_pred             hCCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---------CCeEEEEecCCCHHHHHHHHHH
Confidence            35667777665554 555555554 224599999999988877655542         3556777887752  22221  


Q ss_pred             hhccCCceeEEecCccc
Q psy5757         103 LMMKFDRYDFLPHAPAE  119 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~  119 (139)
                      ....++++|+++.|.-.
T Consensus        97 ~~~~~G~iDiLVNNAG~  113 (273)
T 4fgs_A           97 VKAEAGRIDVLFVNAGG  113 (273)
T ss_dssp             HHHHHSCEEEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence            11235789999988753

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=91.56  E-value=2.9  Score=30.20  Aligned_cols=85  Identities=9%  Similarity=0.088  Sum_probs=54.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|--|++ |+.+..+++.+ ....+|+.++.+++.++.+.+.+.. +.     ..++.++..|+.+.  +..+.. 
T Consensus         7 ~~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~   80 (319)
T 3ioy_A            7 AGRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGS-----GPEVMGVQLDVASREGFKMAADE   80 (319)
T ss_dssp             TTCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCeEEEEECCCCCHHHHHHHHHH
Confidence            45678777765 55555555544 2234899999999888877766654 21     13788899998762  222111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|++|.|...
T Consensus        81 ~~~~~g~id~lv~nAg~   97 (319)
T 3ioy_A           81 VEARFGPVSILCNNAGV   97 (319)
T ss_dssp             HHHHTCCEEEEEECCCC
T ss_pred             HHHhCCCCCEEEECCCc
Confidence             1124578999999864

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=91.51  E-value=2  Score=29.75  Aligned_cols=87  Identities=17%  Similarity=0.142  Sum_probs=52.3

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|--|++ |..+..+++.+. ...+|+.++.+++.++.+.+.+....   -...++.++..|+.+.  +..+..  
T Consensus         6 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~   81 (250)
T 3nyw_A            6 QKGLAIITGAS-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSN---KHVQEPIVLPLDITDCTKADTEIKDI   81 (250)
T ss_dssp             CCCEEEEESTT-SHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHC---TTSCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc---cccCcceEEeccCCCHHHHHHHHHHH
Confidence            45677776655 455555554441 12389999999888877766665410   0125678888888762  111111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        82 ~~~~g~iD~lvnnAg~   97 (250)
T 3nyw_A           82 HQKYGAVDILVNAAAM   97 (250)
T ss_dssp             HHHHCCEEEEEECCCC
T ss_pred             HHhcCCCCEEEECCCc
Confidence            1123579999988864

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=91.30  E-value=0.83  Score=36.62  Aligned_cols=86  Identities=13%  Similarity=-0.026  Sum_probs=51.3

Q ss_pred             CeEEEEcccCChhHHHHHHHcC-----------CCceEEEEeC---CHHHHHHHHH-----------HHHhhc-------
Q psy5757          31 SKVLEIGSGSGYLTNMISELMN-----------STGQVIGIEH---VPQLVNSSIQ-----------NILHSN-------   78 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~-----------~~~~v~~~d~---~~~~~~~a~~-----------~~~~~~-------   78 (139)
                      -+|+|+|-|+|.......+.+.           .+.+++++|.   +++.+..+-.           .+..+.       
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  147 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence            4899999999998877766541           1246899998   7666663322           111110       


Q ss_pred             cccccC--CcEEEEEccchhhhHHHhhhccCCceeEEecCc
Q psy5757          79 ARLLTD--GHIKFVALGMIKRIETVELMMKFDRYDFLPHAP  117 (139)
Q Consensus        79 ~~~~~~--~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~  117 (139)
                      +..+..  -.+++..+|+.+.++++... ...++|+++...
T Consensus       148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~-~~~~~d~~~~D~  187 (676)
T 3ps9_A          148 RLLLDAGRVTLDLWFGDINELTSQLDDS-LNQKVDAWFLDG  187 (676)
T ss_dssp             EEEEGGGTEEEEEEESCHHHHGGGBCGG-GTTCEEEEEECC
T ss_pred             EEEecCCcEEEEEecCCHHHHHHhcccc-cCCcccEEEECC
Confidence            000111  34567788977766543211 135699998854

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=91.28  E-value=1.5  Score=30.73  Aligned_cols=85  Identities=9%  Similarity=0.105  Sum_probs=53.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|--| |+|..+..+++.+- ...+|+.++.+++.++.+.+.+....     ..++.++..|+.+.  +..+..  
T Consensus        19 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~   92 (266)
T 4egf_A           19 DGKRALITG-ATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF-----GTDVHTVAIDLAEPDAPAELARRA   92 (266)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTSTTHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHHHHHHHH
Confidence            456666655 45566666666552 23489999999888877766654411     25788888888762  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        93 ~~~~g~id~lv~nAg~  108 (266)
T 4egf_A           93 AEAFGGLDVLVNNAGI  108 (266)
T ss_dssp             HHHHTSCSEEEEECCC
T ss_pred             HHHcCCCCEEEECCCc
Confidence            1123578999988763

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=91.26  E-value=0.68  Score=40.36  Aligned_cols=81  Identities=14%  Similarity=0.038  Sum_probs=53.4

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHh------
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVE------  102 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~------  102 (139)
                      ...+++|+.||.|+++..+.+..- .-.+.++|+++.+++.-+.+.          ++..++.+|+.+......      
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~-~~vv~avEid~~A~~ty~~N~----------p~~~~~~~DI~~l~~~~~~gdi~~  918 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMWDPAAQAFRLNN----------PGTTVFTEDCNVLLKLVMAGEVTN  918 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTS-EEEEEEECCSHHHHHHHHHHC----------TTSEEECSCHHHHHHHHTTTCSBC
T ss_pred             CCceEEecccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhC----------CCCcEeeccHHHHhHhhhccchhh
Confidence            346899999999999999887652 116889999998887766653          344566777554221110      


Q ss_pred             ---hhcc-CCceeEEecCcccc
Q psy5757         103 ---LMMK-FDRYDFLPHAPAES  120 (139)
Q Consensus       103 ---~~~~-~~~~D~vi~~~~~~  120 (139)
                         ...+ .+.+|+++..++.+
T Consensus       919 ~~~~~lp~~~~vDvl~GGpPCQ  940 (1330)
T 3av4_A          919 SLGQRLPQKGDVEMLCGGPPCQ  940 (1330)
T ss_dssp             SSCCBCCCTTTCSEEEECCCCT
T ss_pred             hhhhhccccCccceEEecCCCc
Confidence               0001 13589999888744

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.26  E-value=2.2  Score=29.70  Aligned_cols=81  Identities=9%  Similarity=0.053  Sum_probs=50.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|--|+ +|..+..+++.+ ....+|+.++.+++.++...+.+.         .++.++..|+.+.  +..+..  
T Consensus         7 ~gk~~lVTGa-s~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~   76 (255)
T 4eso_A            7 QGKKAIVIGG-THGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG---------PRVHALRSDIADLNEIAVLGAAA   76 (255)
T ss_dssp             TTCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CcceEEEccCCCHHHHHHHHHHH
Confidence            4567777765 455566665554 223489999999877766555441         4678888888762  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        77 ~~~~g~id~lv~nAg~   92 (255)
T 4eso_A           77 GQTLGAIDLLHINAGV   92 (255)
T ss_dssp             HHHHSSEEEEEECCCC
T ss_pred             HHHhCCCCEEEECCCC
Confidence            1124579999988753

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=91.26  E-value=1.4  Score=30.75  Aligned_cols=84  Identities=19%  Similarity=0.215  Sum_probs=53.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +++.+|-.| |+|..+..+++.+ ....+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+..  
T Consensus         5 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~   77 (257)
T 3imf_A            5 KEKVVIITG-GSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF------PGQILTVQMDVRNTDDIQKMIEQI   77 (257)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS------TTCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence            456676655 4566666666655 22348999999988887777666441      14788888898762  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        78 ~~~~g~id~lv~nAg~   93 (257)
T 3imf_A           78 DEKFGRIDILINNAAG   93 (257)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1123578999988763

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=91.22  E-value=3  Score=29.69  Aligned_cols=91  Identities=9%  Similarity=-0.023  Sum_probs=55.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHH---c---CCCceEEEEe-----CCHH-------------------HHHHHHHHHH--
Q psy5757          28 NENSKVLEIGSGSGYLTNMISEL---M---NSTGQVIGIE-----HVPQ-------------------LVNSSIQNIL--   75 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~---~---~~~~~v~~~d-----~~~~-------------------~~~~a~~~~~--   75 (139)
                      .-...|+|+|+-.|..+..++..   .   .+..+++++|     ..+.                   ..+..++.+.  
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            33458999999999988886653   1   2456999999     2210                   0111222111  


Q ss_pred             -hhccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcc
Q psy5757          76 -HSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        76 -~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                       ...+.....++++++.|++.+.++.+....+..++|+++....
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D  191 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD  191 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc
Confidence             0000011137899999998887765533344567999988775

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=91.20  E-value=1.1  Score=34.58  Aligned_cols=72  Identities=10%  Similarity=0.129  Sum_probs=49.1

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      .|+|+-+|  .|..+..+++.+.. .-.|+.+|.+++.++.+.+.+           .+..++||+.+ ..-+ ..+.-+
T Consensus         3 ~M~iiI~G--~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-----------~~~~i~Gd~~~-~~~L-~~Agi~   67 (461)
T 4g65_A            3 AMKIIILG--AGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-----------DLRVVNGHASH-PDVL-HEAGAQ   67 (461)
T ss_dssp             CEEEEEEC--CSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-----------SCEEEESCTTC-HHHH-HHHTTT
T ss_pred             cCEEEEEC--CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-----------CcEEEEEcCCC-HHHH-HhcCCC
Confidence            46777655  56788888888743 337999999999888776543           45678899876 2222 233455


Q ss_pred             ceeEEecC
Q psy5757         109 RYDFLPHA  116 (139)
Q Consensus       109 ~~D~vi~~  116 (139)
                      ..|++++.
T Consensus        68 ~ad~~ia~   75 (461)
T 4g65_A           68 DADMLVAV   75 (461)
T ss_dssp             TCSEEEEC
T ss_pred             cCCEEEEE
Confidence            67877653

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=91.17  E-value=2.7  Score=30.79  Aligned_cols=46  Identities=13%  Similarity=0.150  Sum_probs=36.6

Q ss_pred             CCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          27 LNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        27 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      ++++++||-+|+|. |..+..+++..+. ..|++++.+++..+.+++.
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGA-CPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTC-CSEEEEESCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh
Confidence            68899999999863 6677777777653 1499999999999988876

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=91.07  E-value=1.8  Score=29.73  Aligned_cols=80  Identities=14%  Similarity=0.090  Sum_probs=50.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM  104 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~  104 (139)
                      .+++++|-.|+ +|..+..+++.+. ...+|+.++.+++.++...+.+.         .++.+...|..+.  +.++.. 
T Consensus        12 ~~~k~vlVTGa-s~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~-   80 (249)
T 3f9i_A           12 LTGKTSLITGA-SSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK---------DNYTIEVCNLANKEECSNLIS-   80 (249)
T ss_dssp             CTTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------SSEEEEECCTTSHHHHHHHHH-
T ss_pred             CCCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc---------cCccEEEcCCCCHHHHHHHHH-
Confidence            46677876665 5666666666552 23489999999877766554432         4677888887752  222211 


Q ss_pred             ccCCceeEEecCccc
Q psy5757         105 MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~  119 (139)
                       ..+.+|+++.|...
T Consensus        81 -~~~~id~li~~Ag~   94 (249)
T 3f9i_A           81 -KTSNLDILVCNAGI   94 (249)
T ss_dssp             -TCSCCSEEEECCC-
T ss_pred             -hcCCCCEEEECCCC
Confidence             23569999988763

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=91.03  E-value=1.6  Score=31.72  Aligned_cols=45  Identities=16%  Similarity=0.152  Sum_probs=36.8

Q ss_pred             cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++++||-.|+|. |..+..+++..+.  +|++++.+++..+.+++
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGL--RVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHH
Confidence            367899999999874 7788888887754  99999999988887755

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.02  E-value=3  Score=29.70  Aligned_cols=86  Identities=16%  Similarity=0.068  Sum_probs=51.2

Q ss_pred             CCCCeEEEEcccCC-hhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh
Q psy5757          28 NENSKVLEIGSGSG-YLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G-~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~  103 (139)
                      ..++.+|--|+++| +.+..+++.+ ....+|+.++.++...+.+++....       ..++.++..|+.+.  +..+..
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~  101 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEE-------LGAFVAGHCDVADAASIDAVFE  101 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHH-------HTCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-------cCCceEEECCCCCHHHHHHHHH
Confidence            45678888887643 3555555444 1234899999886655555444433       14577888888762  222211


Q ss_pred             --hccCCceeEEecCcccc
Q psy5757         104 --MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 --~~~~~~~D~vi~~~~~~  120 (139)
                        ...++.+|++|.|....
T Consensus       102 ~~~~~~g~iD~lVnnAG~~  120 (293)
T 3grk_A          102 TLEKKWGKLDFLVHAIGFS  120 (293)
T ss_dssp             HHHHHTSCCSEEEECCCCC
T ss_pred             HHHHhcCCCCEEEECCccC
Confidence              12346799999887643

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=91.02  E-value=2.2  Score=30.13  Aligned_cols=84  Identities=8%  Similarity=0.124  Sum_probs=52.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|--|+ +|..+..+++.+ ....+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+..  
T Consensus        23 ~~k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~~~   95 (279)
T 3sju_A           23 RPQTAFVTGV-SSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA------GHDVDGSSCDVTSTDEVHAAVAAA   95 (279)
T ss_dssp             --CEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHHHH
Confidence            4567777664 555666665554 12348999999988887776666551      14688888898762  121111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.|...
T Consensus        96 ~~~~g~id~lv~nAg~  111 (279)
T 3sju_A           96 VERFGPIGILVNSAGR  111 (279)
T ss_dssp             HHHHCSCCEEEECCCC
T ss_pred             HHHcCCCcEEEECCCC
Confidence            1123578999988764

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=91.01  E-value=1.7  Score=30.30  Aligned_cols=84  Identities=13%  Similarity=0.156  Sum_probs=54.3

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~  103 (139)
                      .++.+|-.| |+|..+..+++.+ ....+|+.++.+++.++...+.+...      ..++.++..|+.+.  +..+.  .
T Consensus        28 ~~k~vlITG-as~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~  100 (262)
T 3rkr_A           28 SGQVAVVTG-ASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA------GGEAESHACDLSHSDAIAAFATGV  100 (262)
T ss_dssp             TTCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh------CCceeEEEecCCCHHHHHHHHHHH
Confidence            456777666 4566777776655 22348999999988887777766551      15688888888762  22111  1


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+++|++|.+...
T Consensus       101 ~~~~g~id~lv~~Ag~  116 (262)
T 3rkr_A          101 LAAHGRCDVLVNNAGV  116 (262)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHhcCCCCEEEECCCc
Confidence            1123578999998765

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=90.95  E-value=3  Score=29.31  Aligned_cols=84  Identities=11%  Similarity=0.115  Sum_probs=53.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|--|+ +|..+..+++.+ ....+|+.++.+++..+.+.+.+....     ..++.++..|+.+.  +..+..  
T Consensus        26 ~~k~~lVTGa-s~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~   99 (277)
T 4fc7_A           26 RDKVAFITGG-GSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT-----GRRCLPLSMDVRAPPAVMAAVDQA   99 (277)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-----CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            4567777665 566666666655 234589999999877766665554311     25788888998762  111111  


Q ss_pred             hccCCceeEEecCcc
Q psy5757         104 MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~  118 (139)
                      ....+.+|+++.|..
T Consensus       100 ~~~~g~id~lv~nAg  114 (277)
T 4fc7_A          100 LKEFGRIDILINCAA  114 (277)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCc
Confidence            112357999999886

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=90.84  E-value=2.6  Score=29.37  Aligned_cols=87  Identities=6%  Similarity=0.017  Sum_probs=53.3

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      ..++.+|--|++ +..+..+++.+ ....+|+.++.+++.++.+.+.+....    ...++.++..|+.+.  ...+.. 
T Consensus         6 l~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~   80 (265)
T 3lf2_A            6 LSEAVAVVTGGS-SGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRF----PGARLFASVCDVLDALQVRAFAEA   80 (265)
T ss_dssp             CTTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS----TTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc----CCceEEEEeCCCCCHHHHHHHHHH
Confidence            345677777655 55555555544 123489999999888877766664410    123588888888762  122111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|+++.|...
T Consensus        81 ~~~~~g~id~lvnnAg~   97 (265)
T 3lf2_A           81 CERTLGCASILVNNAGQ   97 (265)
T ss_dssp             HHHHHCSCSEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence             1123578999998864

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=90.82  E-value=1.5  Score=30.29  Aligned_cols=84  Identities=18%  Similarity=0.234  Sum_probs=53.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|+ +|..+..+++.+- ...+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+..  
T Consensus         8 ~~k~vlITGa-s~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~   80 (253)
T 3qiv_A            8 ENKVGIVTGS-GGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD------GGTAISVAVDVSDPESAKAMADRT   80 (253)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence            4567777765 5566666666552 2348999999988888777666551      15678888898762  122111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.|...
T Consensus        81 ~~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           81 LAEFGGIDYLVNNAAI   96 (253)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCc
Confidence            1123478999998754

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=90.78  E-value=2.8  Score=29.80  Aligned_cols=86  Identities=13%  Similarity=0.130  Sum_probs=53.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc----CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM----NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE  102 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~----~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~  102 (139)
                      .++.+|-.|++ |..+..+++.+    ....+|+..+.+++.++.+.+.+....    ...++.++..|+.+.  +..+.
T Consensus        32 ~~k~~lVTGas-~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dv~d~~~v~~~~  106 (287)
T 3rku_A           32 AKKTVLITGAS-AGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEF----PNAKVHVAQLDITQAEKIKPFI  106 (287)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHC----TTCEEEEEECCTTCGGGHHHHH
T ss_pred             CCCEEEEecCC-ChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhC----CCCeEEEEECCCCCHHHHHHHH
Confidence            35677777754 55566665544    212389999999888877766665410    025688888888762  22221


Q ss_pred             hh--ccCCceeEEecCccc
Q psy5757         103 LM--MKFDRYDFLPHAPAE  119 (139)
Q Consensus       103 ~~--~~~~~~D~vi~~~~~  119 (139)
                      ..  ...+.+|++|.|...
T Consensus       107 ~~~~~~~g~iD~lVnnAG~  125 (287)
T 3rku_A          107 ENLPQEFKDIDILVNNAGK  125 (287)
T ss_dssp             HTSCGGGCSCCEEEECCCC
T ss_pred             HHHHHhcCCCCEEEECCCc
Confidence            11  123579999998764

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=90.75  E-value=2.3  Score=29.10  Aligned_cols=84  Identities=11%  Similarity=0.062  Sum_probs=53.4

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~  103 (139)
                      .++.+|-.| |+|..+..+++.+- ...+|+.++.++...+...+.+...      ..++.++..|+.+.  +..+.  .
T Consensus         4 ~~k~vlITG-as~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~   76 (247)
T 3lyl_A            4 NEKVALVTG-ASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK------GFKARGLVLNISDIESIQNFFAEI   76 (247)
T ss_dssp             TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHH
Confidence            356677666 45666666666552 2348999999988887777666551      14688888888762  22211  1


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+++|+++.|...
T Consensus        77 ~~~~~~id~li~~Ag~   92 (247)
T 3lyl_A           77 KAENLAIDILVNNAGI   92 (247)
T ss_dssp             HHTTCCCSEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1234578999998764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=90.73  E-value=1.2  Score=32.37  Aligned_cols=45  Identities=20%  Similarity=0.333  Sum_probs=35.9

Q ss_pred             cCCCCCeEEEEccc--CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSG--SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~G--~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++++||-.|+|  .|..+..+++..+.  +|++++.+++.++.+++
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQILNF--RLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHH
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHh
Confidence            36889999999987  56777777777653  99999999887777765

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=90.65  E-value=2.6  Score=28.67  Aligned_cols=85  Identities=9%  Similarity=0.094  Sum_probs=52.4

Q ss_pred             CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M  104 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~  104 (139)
                      ++.+|-.| |+|..+..+++.+. ...+|+.++.+++.++.+.+.+....     ..++.++..|+.+.  +..+..  .
T Consensus         2 ~k~vlITG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~   75 (235)
T 3l77_A            2 MKVAVITG-ASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ-----GVEVFYHHLDVSKAESVEEFSKKVL   75 (235)
T ss_dssp             CCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTCHHHHHHHCC-HH
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCeEEEEEeccCCHHHHHHHHHHHH
Confidence            35566666 45666666666552 23489999999888777766665311     25788888998762  111110  1


Q ss_pred             ccCCceeEEecCcccc
Q psy5757         105 MKFDRYDFLPHAPAES  120 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~  120 (139)
                      ...+.+|+++.|....
T Consensus        76 ~~~g~id~li~~Ag~~   91 (235)
T 3l77_A           76 ERFGDVDVVVANAGLG   91 (235)
T ss_dssp             HHHSSCSEEEECCCCC
T ss_pred             HhcCCCCEEEECCccc
Confidence            1124689999987643

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=90.59  E-value=2.3  Score=29.85  Aligned_cols=84  Identities=11%  Similarity=0.131  Sum_probs=50.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeC-------------CHHHHHHHHHHHHhhccccccCCcEEEEEccc
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEH-------------VPQLVNSSIQNILHSNARLLTDGHIKFVALGM   94 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~-------------~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~   94 (139)
                      .++.+|--|++ +..+..+++.+ ....+|+.++.             +++.++.+.+.+...      ..++.++..|+
T Consensus        10 ~~k~~lVTGas-~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~   82 (277)
T 3tsc_A           10 EGRVAFITGAA-RGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA------NRRIVAAVVDT   82 (277)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT------TCCEEEEECCT
T ss_pred             CCCEEEEECCc-cHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc------CCeEEEEECCC
Confidence            45677776654 45555555544 12348999987             566666655554441      25688888888


Q ss_pred             hhh--hHHHhh--hccCCceeEEecCccc
Q psy5757          95 IKR--IETVEL--MMKFDRYDFLPHAPAE  119 (139)
Q Consensus        95 ~~~--~~~~~~--~~~~~~~D~vi~~~~~  119 (139)
                      .+.  +..+..  ....+++|+++.|...
T Consensus        83 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~  111 (277)
T 3tsc_A           83 RDFDRLRKVVDDGVAALGRLDIIVANAGV  111 (277)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            762  122111  1123579999998864

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=90.57  E-value=2.6  Score=27.87  Aligned_cols=73  Identities=14%  Similarity=0.205  Sum_probs=47.6

Q ss_pred             eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhhccCCc
Q psy5757          32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELMMKFDR  109 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~~~  109 (139)
                      ++|-.| |+|..+..+++.+-.+ +|+.++.++...+...+.+          .. +++..|+.+.  +..+...  .+.
T Consensus         2 ~vlVtG-asg~iG~~la~~l~~~-~V~~~~r~~~~~~~~~~~~----------~~-~~~~~D~~~~~~~~~~~~~--~~~   66 (207)
T 2yut_A            2 RVLITG-ATGGLGGAFARALKGH-DLLLSGRRAGALAELAREV----------GA-RALPADLADELEAKALLEE--AGP   66 (207)
T ss_dssp             EEEEET-TTSHHHHHHHHHTTTS-EEEEECSCHHHHHHHHHHH----------TC-EECCCCTTSHHHHHHHHHH--HCS
T ss_pred             EEEEEc-CCcHHHHHHHHHHHhC-CEEEEECCHHHHHHHHHhc----------cC-cEEEeeCCCHHHHHHHHHh--cCC
Confidence            455554 6888999999998666 9999999876655443322          12 6677787651  2222111  346


Q ss_pred             eeEEecCccc
Q psy5757         110 YDFLPHAPAE  119 (139)
Q Consensus       110 ~D~vi~~~~~  119 (139)
                      +|+++.+...
T Consensus        67 id~vi~~ag~   76 (207)
T 2yut_A           67 LDLLVHAVGK   76 (207)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999988753

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=90.53  E-value=3  Score=28.81  Aligned_cols=85  Identities=12%  Similarity=0.149  Sum_probs=53.2

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc--hh--hhHHH
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM--IK--RIETV  101 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~--~~--~~~~~  101 (139)
                      ..++.+|--|+ +|..+..+++.+ ....+|+.++.+++.++.+.+.+.. +-      .++.++..|+  .+  .+.++
T Consensus        10 l~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~   82 (252)
T 3f1l_A           10 LNDRIILVTGA-SDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETG------RQPQWFILDLLTCTSENCQQL   82 (252)
T ss_dssp             TTTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS------CCCEEEECCTTTCCHHHHHHH
T ss_pred             cCCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC------CCceEEEEecccCCHHHHHHH
Confidence            34567777665 555666666554 2234899999998888777666654 21      4677888887  33  12221


Q ss_pred             h--hhccCCceeEEecCccc
Q psy5757         102 E--LMMKFDRYDFLPHAPAE  119 (139)
Q Consensus       102 ~--~~~~~~~~D~vi~~~~~  119 (139)
                      .  .....+.+|+++.|...
T Consensus        83 ~~~~~~~~g~id~lv~nAg~  102 (252)
T 3f1l_A           83 AQRIAVNYPRLDGVLHNAGL  102 (252)
T ss_dssp             HHHHHHHCSCCSEEEECCCC
T ss_pred             HHHHHHhCCCCCEEEECCcc
Confidence            1  11234679999998764

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=90.43  E-value=1.6  Score=28.89  Aligned_cols=44  Identities=14%  Similarity=0.176  Sum_probs=30.7

Q ss_pred             cCCCCCeEEEEcc--cCChhHHHHHHHcCCCceEEEEeCCHHHHHHHH
Q psy5757          26 HLNENSKVLEIGS--GSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI   71 (139)
Q Consensus        26 ~~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~   71 (139)
                      .++++++||..|+  |.|.....++...+  ++|++++.+++..+.++
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMIG--ARIYTTAGSDAKREMLS   80 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHH
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence            3678899999984  34455555555544  38999999987766553

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=90.42  E-value=3  Score=29.22  Aligned_cols=85  Identities=8%  Similarity=0.128  Sum_probs=51.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCC------------HHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHV------------PQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~------------~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      .++.+|--|+ +|..+..+++.+ ....+|+.++.+            ++.++...+.+...      ..++.++..|+.
T Consensus        12 ~gk~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~   84 (278)
T 3sx2_A           12 TGKVAFITGA-ARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI------GSRIVARQADVR   84 (278)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH------TCCEEEEECCTT
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhc------CCeEEEEeCCCC
Confidence            4567777664 555566665554 123489999876            55565555554441      157888999987


Q ss_pred             hh--hHHHhh--hccCCceeEEecCcccc
Q psy5757          96 KR--IETVEL--MMKFDRYDFLPHAPAES  120 (139)
Q Consensus        96 ~~--~~~~~~--~~~~~~~D~vi~~~~~~  120 (139)
                      +.  +..+..  ....+.+|++|.|....
T Consensus        85 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~  113 (278)
T 3sx2_A           85 DRESLSAALQAGLDELGRLDIVVANAGIA  113 (278)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            62  222111  11235799999988643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=90.38  E-value=1.2  Score=33.25  Aligned_cols=46  Identities=20%  Similarity=0.224  Sum_probs=36.1

Q ss_pred             cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++.+||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGA-ACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH
Confidence            368899999999875 7778888887642 289999999887777653

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=90.01  E-value=1.8  Score=30.55  Aligned_cols=82  Identities=13%  Similarity=0.120  Sum_probs=51.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|-.| |+|..+..+++.+. ...+|+.++.+++.++...+.+.. +      ..++.++..|+.+.  +..+.. 
T Consensus        27 ~~k~vlITG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~d~~~v~~~~~~   99 (286)
T 1xu9_A           27 QGKKVIVTG-ASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG------AASAHYIAGTMEDMTFAEQFVAQ   99 (286)
T ss_dssp             TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT------CSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC------CCceEEEeCCCCCHHHHHHHHHH
Confidence            456777666 55667777666551 234899999998877766555544 2      14688888898761  222111 


Q ss_pred             -hccCCceeEEecCc
Q psy5757         104 -MMKFDRYDFLPHAP  117 (139)
Q Consensus       104 -~~~~~~~D~vi~~~  117 (139)
                       ....+.+|++|.|.
T Consensus       100 ~~~~~g~iD~li~na  114 (286)
T 1xu9_A          100 AGKLMGGLDMLILNH  114 (286)
T ss_dssp             HHHHHTSCSEEEECC
T ss_pred             HHHHcCCCCEEEECC
Confidence             11234689999883

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=90.00  E-value=2  Score=30.46  Aligned_cols=84  Identities=15%  Similarity=0.198  Sum_probs=52.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|-.| |+|..+..+++.+ ....+|+.++.+++.++.+.+.+.. +-      ..+.++..|+.+.  +..+.. 
T Consensus        32 ~gk~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~  104 (281)
T 4dry_A           32 EGRIALVTG-GGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTG------NIVRAVVCDVGDPDQVAALFAA  104 (281)
T ss_dssp             --CEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS------SCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC------CeEEEEEcCCCCHHHHHHHHHH
Confidence            456666655 4566666666655 2234899999998888777666654 22      3457888888762  222111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|++|.|...
T Consensus       105 ~~~~~g~iD~lvnnAG~  121 (281)
T 4dry_A          105 VRAEFARLDLLVNNAGS  121 (281)
T ss_dssp             HHHHHSCCSEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence             1124578999998864

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=89.99  E-value=2.5  Score=29.04  Aligned_cols=84  Identities=11%  Similarity=0.156  Sum_probs=52.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.| |+|..+..+++.+- ...+|+.++.++...+...+.+...      ..++.++..|+.+.  +..+..  
T Consensus        12 ~~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~   84 (260)
T 3awd_A           12 DNRVAIVTG-GAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRME------GHDVSSVVMDVTNTESVQNAVRSV   84 (260)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHH
Confidence            456777766 55667777766552 2348999999987666555555431      14688888998762  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.+...
T Consensus        85 ~~~~~~id~vi~~Ag~  100 (260)
T 3awd_A           85 HEQEGRVDILVACAGI  100 (260)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1123468999988753

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=89.98  E-value=1.8  Score=31.02  Aligned_cols=86  Identities=3%  Similarity=-0.042  Sum_probs=54.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      ..++.+|-.|++ |..+..+++.+ ....+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+.. 
T Consensus        29 l~gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~~  101 (301)
T 3tjr_A           29 FDGRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ------GFDAHGVVCDVRHLDEMVRLADE  101 (301)
T ss_dssp             STTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHHH
Confidence            356678777655 55556665554 12348999999988888777766551      14788888898762  222111 


Q ss_pred             -hccCCceeEEecCcccc
Q psy5757         104 -MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~~  120 (139)
                       ....+.+|++|.|....
T Consensus       102 ~~~~~g~id~lvnnAg~~  119 (301)
T 3tjr_A          102 AFRLLGGVDVVFSNAGIV  119 (301)
T ss_dssp             HHHHHSSCSEEEECCCCC
T ss_pred             HHHhCCCCCEEEECCCcC
Confidence             11234789999987643

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=89.70  E-value=3.6  Score=28.86  Aligned_cols=85  Identities=9%  Similarity=0.100  Sum_probs=51.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeC-------------CHHHHHHHHHHHHhhccccccCCcEEEEEcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEH-------------VPQLVNSSIQNILHSNARLLTDGHIKFVALG   93 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~-------------~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d   93 (139)
                      ..++.+|--|++ |..+..+++.+ ....+|+.++.             +++.++.+.+.+...      ..++.++..|
T Consensus        13 l~gk~~lVTGas-~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D   85 (280)
T 3pgx_A           13 LQGRVAFITGAA-RGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ------GRKALTRVLD   85 (280)
T ss_dssp             TTTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT------TCCEEEEECC
T ss_pred             cCCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc------CCeEEEEEcC
Confidence            355677776655 55555555544 22348999987             566666666555441      1467888888


Q ss_pred             chhh--hHHHhh--hccCCceeEEecCccc
Q psy5757          94 MIKR--IETVEL--MMKFDRYDFLPHAPAE  119 (139)
Q Consensus        94 ~~~~--~~~~~~--~~~~~~~D~vi~~~~~  119 (139)
                      +.+.  +..+..  ....+.+|+++.|...
T Consensus        86 v~~~~~v~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           86 VRDDAALRELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             TTCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            8762  222111  1124579999998764

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=89.65  E-value=3  Score=29.54  Aligned_cols=84  Identities=11%  Similarity=0.124  Sum_probs=52.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +++.+|--|+ +|..+..+++.+ ....+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+..  
T Consensus        27 ~~k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~~~   99 (283)
T 3v8b_A           27 PSPVALITGA-GSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA------GGQAIALEADVSDELQMRNAVRDL   99 (283)
T ss_dssp             CCCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence            4566776664 455666666554 22348999999988777776666441      14688888898762  122111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus       100 ~~~~g~iD~lVnnAg~  115 (283)
T 3v8b_A          100 VLKFGHLDIVVANAGI  115 (283)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCCCEEEECCCC
Confidence            1124579999998764

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=89.62  E-value=1.2  Score=32.25  Aligned_cols=46  Identities=17%  Similarity=0.271  Sum_probs=34.8

Q ss_pred             cCCCCCeEEEEcc--cCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGS--GSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        26 ~~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      .++++++||-.|+  |.|.....+++..+  ++|++++.+++..+.+.+.
T Consensus       146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~~  193 (336)
T 4b7c_A          146 QPKNGETVVISGAAGAVGSVAGQIARLKG--CRVVGIAGGAEKCRFLVEE  193 (336)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHH
Confidence            3688999999997  35666777777665  3999999998877776443

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=89.58  E-value=1.8  Score=30.54  Aligned_cols=86  Identities=16%  Similarity=0.088  Sum_probs=54.2

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--  102 (139)
                      ..++.+|--| |+|..+..+++.+ ....+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+.  
T Consensus        24 l~gk~~lVTG-as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~~   96 (271)
T 4ibo_A           24 LGGRTALVTG-SSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNV------GHDAEAVAFDVTSESEIIEAFAR   96 (271)
T ss_dssp             CTTCEEEETT-CSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT------TCCEEECCCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHH
Confidence            3556776665 5566666666655 22348999999988877776666541      14688888888762  22211  


Q ss_pred             hhccCCceeEEecCcccc
Q psy5757         103 LMMKFDRYDFLPHAPAES  120 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~~  120 (139)
                      .....+.+|+++.|....
T Consensus        97 ~~~~~g~iD~lv~nAg~~  114 (271)
T 4ibo_A           97 LDEQGIDVDILVNNAGIQ  114 (271)
T ss_dssp             HHHHTCCCCEEEECCCCC
T ss_pred             HHHHCCCCCEEEECCCCC
Confidence            112345799999987643

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=89.52  E-value=4.5  Score=29.43  Aligned_cols=45  Identities=22%  Similarity=0.288  Sum_probs=35.3

Q ss_pred             cCCCCCeEEEEcc--cCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGS--GSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++++||-.|+  |.|..+..+++..+.  +|++++.+++..+.+++
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~~  202 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGA--KVIAVVNRTAATEFVKS  202 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHh
Confidence            3678999999997  356777777777653  99999999887777765

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=89.51  E-value=2.8  Score=29.08  Aligned_cols=84  Identities=13%  Similarity=0.092  Sum_probs=51.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|+ +|..+..+++.+- ...+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+..  
T Consensus         8 ~~k~vlVTGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~   80 (260)
T 2ae2_A            8 EGCTALVTGG-SRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK------GFKVEASVCDLSSRSERQELMNTV   80 (260)
T ss_dssp             TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            4567776664 5666666666552 2348999999987776655554431      14678888888762  222111  


Q ss_pred             hccC-CceeEEecCccc
Q psy5757         104 MMKF-DRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~-~~~D~vi~~~~~  119 (139)
                      .... +.+|+++.|...
T Consensus        81 ~~~~~g~id~lv~~Ag~   97 (260)
T 2ae2_A           81 ANHFHGKLNILVNNAGI   97 (260)
T ss_dssp             HHHTTTCCCEEEECCCC
T ss_pred             HHHcCCCCCEEEECCCC
Confidence            1123 578999988763

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=89.45  E-value=2.3  Score=31.68  Aligned_cols=46  Identities=20%  Similarity=0.247  Sum_probs=35.7

Q ss_pred             cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++.+||-+|+|. |..+..+++..+. .+|+++|.+++.++.+++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga-~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCC-CeEEEEcCCHHHHHHHHH
Confidence            367899999999764 6777788887642 279999999988887754

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=89.34  E-value=3.7  Score=28.70  Aligned_cols=84  Identities=7%  Similarity=0.026  Sum_probs=52.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++++|-.| |+|..+..+++.+. ...+|+.++.++...+...+.+...      ..++.++..|+.+.  +.++..  
T Consensus        30 ~~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~v~~~~~~~  102 (272)
T 1yb1_A           30 TGEIVLITG-AGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL------GAKVHTFVVDCSNREDIYSSAKKV  102 (272)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc------CCeEEEEEeeCCCHHHHHHHHHHH
Confidence            456777766 45667777766552 2348999999987776665555441      14688888888762  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.+...
T Consensus       103 ~~~~g~iD~li~~Ag~  118 (272)
T 1yb1_A          103 KAEIGDVSILVNNAGV  118 (272)
T ss_dssp             HHHTCCCSEEEECCCC
T ss_pred             HHHCCCCcEEEECCCc
Confidence            1124578999988753

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=89.32  E-value=3.2  Score=28.79  Aligned_cols=81  Identities=12%  Similarity=0.039  Sum_probs=50.6

Q ss_pred             CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhhc-
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELMM-  105 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~-  105 (139)
                      ++.+|--| |+|..+..+++.+. ...+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+.... 
T Consensus         5 ~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (260)
T 2qq5_A            5 GQVCVVTG-ASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL------GGQCVPVVCDSSQESEVRSLFEQVD   77 (260)
T ss_dssp             TCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH------SSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc------CCceEEEECCCCCHHHHHHHHHHHH
Confidence            45666655 56666776666552 2348999999987776665555431      14678888888762  22221111 


Q ss_pred             --cCCceeEEecCc
Q psy5757         106 --KFDRYDFLPHAP  117 (139)
Q Consensus       106 --~~~~~D~vi~~~  117 (139)
                        ..+++|+++.|.
T Consensus        78 ~~~~g~id~lvnnA   91 (260)
T 2qq5_A           78 REQQGRLDVLVNNA   91 (260)
T ss_dssp             HHHTTCCCEEEECC
T ss_pred             HhcCCCceEEEECC
Confidence              156789999987

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=89.30  E-value=2.7  Score=29.54  Aligned_cols=84  Identities=11%  Similarity=0.086  Sum_probs=52.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|--| |+|..+..+++.+ ....+|+.++.+++..+...+.+...      ..++.++..|+.+.  +..+..  
T Consensus        27 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~~~~   99 (270)
T 3ftp_A           27 DKQVAIVTG-ASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA------GLEGRGAVLNVNDATAVDALVEST   99 (270)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH------TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEEeCCCHHHHHHHHHHH
Confidence            455666555 5666666666655 22348999999988877776666551      13577788887752  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ...++.+|++|.|...
T Consensus       100 ~~~~g~iD~lvnnAg~  115 (270)
T 3ftp_A          100 LKEFGALNVLVNNAGI  115 (270)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1124578999998763

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=89.25  E-value=2.1  Score=30.54  Aligned_cols=84  Identities=17%  Similarity=0.057  Sum_probs=50.4

Q ss_pred             CCCeEEEEcccC-ChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGS-GYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~-G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|-.|+++ ...+..+++.+ ....+|+.++.++...+.+.+....       ..++.++..|+.+.  +..+.. 
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~~  101 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAES-------LGVKLTVPCDVSDAESVDNMFKV  101 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH-------HTCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh-------cCCeEEEEcCCCCHHHHHHHHHH
Confidence            467888888754 35555555544 1234899999987655555544443       13457788887762  222211 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|++|.|...
T Consensus       102 ~~~~~g~iD~lVnnAG~  118 (296)
T 3k31_A          102 LAEEWGSLDFVVHAVAF  118 (296)
T ss_dssp             HHHHHSCCSEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCc
Confidence             1123578999998864

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=89.21  E-value=4.7  Score=29.25  Aligned_cols=45  Identities=16%  Similarity=0.223  Sum_probs=34.9

Q ss_pred             cCCCCCeEEEEcc--cCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGS--GSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .+++++++|-.|+  |.|.....+++..+  +++++++.+++.++.+++
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~~  209 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFG--ARVIATAGSEDKLRRAKA  209 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHh
Confidence            3678899999998  45667777777664  389999999888877754

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=89.19  E-value=3.9  Score=28.83  Aligned_cols=85  Identities=13%  Similarity=0.185  Sum_probs=51.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeC-CHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEH-VPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--  102 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~-~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--  102 (139)
                      .++.+|--|+ +|..+..+++.+ ....+|+..+. +++.++...+.+...     ...++.++..|+.+.  +..+.  
T Consensus        24 ~~k~~lVTGa-s~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~~~v~~~~~~   97 (281)
T 3v2h_A           24 MTKTAVITGS-TSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGL-----SSGTVLHHPADMTKPSEIADMMAM   97 (281)
T ss_dssp             TTCEEEEETC-SSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTT-----CSSCEEEECCCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhc-----cCCcEEEEeCCCCCHHHHHHHHHH
Confidence            4567777665 455566666554 22348999987 666666655555441     125788888888762  22211  


Q ss_pred             hhccCCceeEEecCccc
Q psy5757         103 LMMKFDRYDFLPHAPAE  119 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~  119 (139)
                      .....+.+|+++.|...
T Consensus        98 ~~~~~g~iD~lv~nAg~  114 (281)
T 3v2h_A           98 VADRFGGADILVNNAGV  114 (281)
T ss_dssp             HHHHTSSCSEEEECCCC
T ss_pred             HHHHCCCCCEEEECCCC
Confidence            11234579999988764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=89.15  E-value=1.9  Score=29.17  Aligned_cols=72  Identities=14%  Similarity=0.061  Sum_probs=43.1

Q ss_pred             CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      ++|+-+|+  |..+..+++.+. ....++.+|.+++.++...+.           .+..++.+|..+ ...+. .+....
T Consensus         1 M~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-----------~~~~~i~gd~~~-~~~l~-~a~i~~   65 (218)
T 3l4b_C            1 MKVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-----------LKATIIHGDGSH-KEILR-DAEVSK   65 (218)
T ss_dssp             CCEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-----------SSSEEEESCTTS-HHHHH-HHTCCT
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-----------cCCeEEEcCCCC-HHHHH-hcCccc
Confidence            35666664  667777776552 234899999998877654432           235577888765 22221 222345


Q ss_pred             eeEEecCc
Q psy5757         110 YDFLPHAP  117 (139)
Q Consensus       110 ~D~vi~~~  117 (139)
                      .|+++...
T Consensus        66 ad~vi~~~   73 (218)
T 3l4b_C           66 NDVVVILT   73 (218)
T ss_dssp             TCEEEECC
T ss_pred             CCEEEEec
Confidence            67776554

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=89.10  E-value=2.2  Score=29.99  Aligned_cols=77  Identities=14%  Similarity=0.134  Sum_probs=46.2

Q ss_pred             CeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--hhc
Q psy5757          31 SKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--LMM  105 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~~~  105 (139)
                      +.+|--|++ ++.+..+++.+ ...++|+.+|.+++..+...+.          ..++..+..|+.+.  ..++.  ...
T Consensus         3 K~vlVTGas-~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~v~~~~~   71 (247)
T 3ged_A            3 RGVIVTGGG-HGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE----------RPNLFYFHGDVADPLTLKKFVEYAME   71 (247)
T ss_dssp             CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT----------CTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEecCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----------cCCEEEEEecCCCHHHHHHHHHHHHH
Confidence            456655554 44555555544 2235999999997665543322          25677888888762  22221  122


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      .++++|+++.|..
T Consensus        72 ~~g~iDiLVNNAG   84 (247)
T 3ged_A           72 KLQRIDVLVNNAC   84 (247)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            3578999998875

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=89.10  E-value=3.4  Score=28.24  Aligned_cols=84  Identities=11%  Similarity=0.147  Sum_probs=52.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++++|-.| |+|..+..+++.+- ...+|+.++.++...+...+.+...      ..++.++..|+.+.  +..+..  
T Consensus        10 ~~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~   82 (255)
T 1fmc_A           10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------GGQAFACRCDITSEQELSALADFA   82 (255)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh------CCceEEEEcCCCCHHHHHHHHHHH
Confidence            456776655 67778888877662 2358999999987766655555431      14678888887751  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.+...
T Consensus        83 ~~~~~~~d~vi~~Ag~   98 (255)
T 1fmc_A           83 ISKLGKVDILVNNAGG   98 (255)
T ss_dssp             HHHHSSCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCC
Confidence            1113468999988753

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=89.07  E-value=3  Score=28.53  Aligned_cols=84  Identities=13%  Similarity=0.150  Sum_probs=52.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc--hh--hhHHHh
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM--IK--RIETVE  102 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~--~~--~~~~~~  102 (139)
                      +++.+|-.|+ +|..+..+++.+- ...+|+.++.+++.++.+.+.+.. +.      .+..++..|.  .+  .+..+.
T Consensus        13 ~~k~vlITGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~~d~d~~~~~~~~~~~   85 (247)
T 3i1j_A           13 KGRVILVTGA-ARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQ------PQPLIIALNLENATAQQYRELA   85 (247)
T ss_dssp             TTCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTS------CCCEEEECCTTTCCHHHHHHHH
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC------CCceEEEeccccCCHHHHHHHH
Confidence            4567776664 5666666666552 234899999998888887777665 32      4566776665  32  122211


Q ss_pred             h--hccCCceeEEecCccc
Q psy5757         103 L--MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       103 ~--~~~~~~~D~vi~~~~~  119 (139)
                      .  ....+.+|++|.|...
T Consensus        86 ~~~~~~~g~id~lv~nAg~  104 (247)
T 3i1j_A           86 ARVEHEFGRLDGLLHNASI  104 (247)
T ss_dssp             HHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHhCCCCCEEEECCcc
Confidence            1  1123578999998764

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=89.07  E-value=1.5  Score=31.09  Aligned_cols=84  Identities=13%  Similarity=0.099  Sum_probs=52.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|--|+ +|..+..+++.+ ....+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+..  
T Consensus         7 ~gk~vlVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~   79 (280)
T 3tox_A            7 EGKIAIVTGA-SSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG------GGEAAALAGDVGDEALHEALVELA   79 (280)
T ss_dssp             TTCEEEESST-TSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT------TCCEEECCCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHHHH
Confidence            4566766664 455666666554 12348999999988777776665441      14678888888762  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.|...
T Consensus        80 ~~~~g~iD~lvnnAg~   95 (280)
T 3tox_A           80 VRRFGGLDTAFNNAGA   95 (280)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1123579999988763

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=89.05  E-value=3  Score=29.29  Aligned_cols=83  Identities=14%  Similarity=0.189  Sum_probs=52.0

Q ss_pred             CCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757          30 NSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M  104 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~  104 (139)
                      ++.+|--|+ +|+.+..+++.+ ....+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+..  .
T Consensus         4 ~k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~~~~   76 (264)
T 3tfo_A            4 DKVILITGA-SGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA------GGTALAQVLDVTDRHSVAAFAQAAV   76 (264)
T ss_dssp             TCEEEESST-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            456666554 456666666655 22348999999988887777666551      14677888888762  222111  1


Q ss_pred             ccCCceeEEecCccc
Q psy5757         105 MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~  119 (139)
                      ...+.+|+++.|...
T Consensus        77 ~~~g~iD~lVnnAG~   91 (264)
T 3tfo_A           77 DTWGRIDVLVNNAGV   91 (264)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence            124579999988754

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=89.00  E-value=3.2  Score=29.31  Aligned_cols=81  Identities=10%  Similarity=0.083  Sum_probs=49.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|++ |..+..+++.+ ....+|+.++.+++.++.+.+.+ .        .++.++..|+.+.  +..+..  
T Consensus        28 ~gk~vlVTGas-~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-~--------~~~~~~~~Dv~d~~~v~~~~~~~   97 (277)
T 3gvc_A           28 AGKVAIVTGAG-AGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-G--------CGAAACRVDVSDEQQIIAMVDAC   97 (277)
T ss_dssp             TTCEEEETTTT-STHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-C--------SSCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-C--------CcceEEEecCCCHHHHHHHHHHH
Confidence            45667766654 55555555544 22348999999987776655543 1        4677888887762  122111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        98 ~~~~g~iD~lvnnAg~  113 (277)
T 3gvc_A           98 VAAFGGVDKLVANAGV  113 (277)
T ss_dssp             HHHHSSCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1124578999988764

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=88.97  E-value=3.4  Score=28.49  Aligned_cols=81  Identities=23%  Similarity=0.215  Sum_probs=49.3

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|--|+ +|..+..+++.+ ....+|+.++.+++..+...+.+.         .+..++..|+.+.  +..+..  
T Consensus         8 ~gk~~lVTGa-s~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~d~~~v~~~~~~~   77 (248)
T 3op4_A            8 EGKVALVTGA-SRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG---------DNGKGMALNVTNPESIEAVLKAI   77 (248)
T ss_dssp             TTCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---------ccceEEEEeCCCHHHHHHHHHHH
Confidence            4567776664 455666666554 223489999999877766655442         3456777887752  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        78 ~~~~g~iD~lv~nAg~   93 (248)
T 3op4_A           78 TDEFGGVDILVNNAGI   93 (248)
T ss_dssp             HHHHCCCSEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1123578999998764

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=88.95  E-value=3.2  Score=29.02  Aligned_cols=85  Identities=11%  Similarity=0.066  Sum_probs=51.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      +++.+|-.| |+|..+..+++.+. ...+|+.++.++..++...+.+.. +.     ..++.++..|+.+.  +..+.. 
T Consensus        31 ~~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~  104 (279)
T 1xg5_A           31 RDRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY-----PGTLIPYRCDLSNEEDILSMFSA  104 (279)
T ss_dssp             TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----SSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCC-----CceEEEEEecCCCHHHHHHHHHH
Confidence            346677666 56677777766552 234899999998777666555544 21     24677888887752  221111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|++|.+...
T Consensus       105 ~~~~~g~iD~vi~~Ag~  121 (279)
T 1xg5_A          105 IRSQHSGVDICINNAGL  121 (279)
T ss_dssp             HHHHHCCCSEEEECCCC
T ss_pred             HHHhCCCCCEEEECCCC
Confidence             1123468999988753

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=88.91  E-value=3  Score=29.47  Aligned_cols=79  Identities=11%  Similarity=0.108  Sum_probs=50.4

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhhc
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELMM  105 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~  105 (139)
                      +++.+|--|+ +|..+..+++.+. ...+|+.++.++...+.+.+.+         ..++.++..|+.+.  +..+... 
T Consensus        15 ~gk~vlVTGa-s~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~d~~~v~~~~~~-   83 (291)
T 3rd5_A           15 AQRTVVITGA-NSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM---------AGQVEVRELDLQDLSSVRRFADG-   83 (291)
T ss_dssp             TTCEEEEECC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS---------SSEEEEEECCTTCHHHHHHHHHT-
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------cCCeeEEEcCCCCHHHHHHHHHh-
Confidence            5567776664 5666666666552 2348999999977665544332         25788899998762  2222222 


Q ss_pred             cCCceeEEecCccc
Q psy5757         106 KFDRYDFLPHAPAE  119 (139)
Q Consensus       106 ~~~~~D~vi~~~~~  119 (139)
                       .+.+|+++.|...
T Consensus        84 -~~~iD~lv~nAg~   96 (291)
T 3rd5_A           84 -VSGADVLINNAGI   96 (291)
T ss_dssp             -CCCEEEEEECCCC
T ss_pred             -cCCCCEEEECCcC
Confidence             2578999998764

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=88.85  E-value=1.7  Score=31.16  Aligned_cols=85  Identities=16%  Similarity=0.192  Sum_probs=53.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~  103 (139)
                      .++.+|--| |+|..+..+++.+ ....+|+.++.+++.++.+.+.+..     ....++.++..|+.+.  +..+.  .
T Consensus        40 ~~k~vlVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~~Dv~d~~~v~~~~~~~  113 (293)
T 3rih_A           40 SARSVLVTG-GTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGE-----LGAGNVIGVRLDVSDPGSCADAARTV  113 (293)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTT-----SSSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----hCCCcEEEEEEeCCCHHHHHHHHHHH
Confidence            455666555 5566666666655 2234899999998877777666654     1125788899998762  11211  1


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ...++.+|++|.|...
T Consensus       114 ~~~~g~iD~lvnnAg~  129 (293)
T 3rih_A          114 VDAFGALDVVCANAGI  129 (293)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1124578999988763

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=88.75  E-value=3.5  Score=28.87  Aligned_cols=84  Identities=11%  Similarity=0.111  Sum_probs=51.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|+ +|..+..+++.+. ...+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+..  
T Consensus        20 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~   92 (273)
T 1ae1_A           20 KGTTALVTGG-SKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK------GLNVEGSVCDLLSRTERDKLMQTV   92 (273)
T ss_dssp             TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEECCCCCHHHHHHHHHHH
Confidence            4567777664 5666666666552 2348999999987776665555431      14678888887752  222111  


Q ss_pred             hccC-CceeEEecCccc
Q psy5757         104 MMKF-DRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~-~~~D~vi~~~~~  119 (139)
                      .... +.+|+++.|...
T Consensus        93 ~~~~~g~id~lv~nAg~  109 (273)
T 1ae1_A           93 AHVFDGKLNILVNNAGV  109 (273)
T ss_dssp             HHHTTSCCCEEEECCCC
T ss_pred             HHHcCCCCcEEEECCCC
Confidence            1123 678999998763

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=88.72  E-value=0.79  Score=32.98  Aligned_cols=83  Identities=13%  Similarity=0.129  Sum_probs=48.2

Q ss_pred             CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      +++||-.| |+|..+..+++.+- ...+|++++.++.......+.+....     ..++.++.+|+.+ ...+..-....
T Consensus         5 ~~~vlVTG-atG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d-~~~~~~~~~~~   77 (341)
T 3enk_A            5 KGTILVTG-GAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKIT-----GKTPAFHETDVSD-ERALARIFDAH   77 (341)
T ss_dssp             SCEEEEET-TTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHH-----SCCCEEECCCTTC-HHHHHHHHHHS
T ss_pred             CcEEEEec-CCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhc-----CCCceEEEeecCC-HHHHHHHHhcc
Confidence            46777655 67888888777652 23489999876544333333332200     2568888899876 22221111113


Q ss_pred             ceeEEecCccc
Q psy5757         109 RYDFLPHAPAE  119 (139)
Q Consensus       109 ~~D~vi~~~~~  119 (139)
                      .+|+|+.+...
T Consensus        78 ~~d~vih~A~~   88 (341)
T 3enk_A           78 PITAAIHFAAL   88 (341)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECccc
Confidence            58999887753

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=88.66  E-value=2.9  Score=31.22  Aligned_cols=45  Identities=20%  Similarity=0.220  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          27 LNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        27 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      ++++.+||-+|+|. |..+..+++..+. .+|++++.+++.++.+++
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~~~~  256 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGA-SKVILSEPSEVRRNLAKE  256 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH
Confidence            67889999999853 5666677776642 289999999988887765

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=88.54  E-value=3.3  Score=29.83  Aligned_cols=44  Identities=16%  Similarity=0.265  Sum_probs=34.2

Q ss_pred             CCCCCeEEEEcc--cCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          27 LNENSKVLEIGS--GSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        27 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      ++++++||-.|+  |.|.....+++..+.  +|++++.+++.++.+++
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~~  183 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGA--KLIGTVSSPEKAAHAKA  183 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH
Confidence            678899999883  356677777777653  89999999988887764

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=88.41  E-value=3.5  Score=29.35  Aligned_cols=83  Identities=16%  Similarity=0.147  Sum_probs=50.2

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEE-EccchhhhHHHhhhc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFV-ALGMIKRIETVELMM  105 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~-~~d~~~~~~~~~~~~  105 (139)
                      .++++||-.| |+|..+..+++.+- ...+|++++.++.......+.+....     ..+++++ .+|+.+ ...+..  
T Consensus         9 ~~~~~vlVTG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~d-~~~~~~--   79 (342)
T 1y1p_A            9 PEGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY-----PGRFETAVVEDMLK-QGAYDE--   79 (342)
T ss_dssp             CTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-----TTTEEEEECSCTTS-TTTTTT--
T ss_pred             CCCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC-----CCceEEEEecCCcC-hHHHHH--
Confidence            4567888765 56877777776552 23489999988766554444332210     1467887 788765 221111  


Q ss_pred             cCCceeEEecCccc
Q psy5757         106 KFDRYDFLPHAPAE  119 (139)
Q Consensus       106 ~~~~~D~vi~~~~~  119 (139)
                      -.+.+|+|+++...
T Consensus        80 ~~~~~d~vih~A~~   93 (342)
T 1y1p_A           80 VIKGAAGVAHIASV   93 (342)
T ss_dssp             TTTTCSEEEECCCC
T ss_pred             HHcCCCEEEEeCCC
Confidence            12358999887753

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=88.36  E-value=1.2  Score=32.66  Aligned_cols=45  Identities=22%  Similarity=0.369  Sum_probs=34.8

Q ss_pred             CCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          27 LNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        27 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      ++++.+||-+|+|. |..+..+++..+. .+|++++.+++..+.+++
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH
Confidence            67899999999864 6677777776642 289999999887777754

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=88.33  E-value=3.9  Score=28.79  Aligned_cols=82  Identities=13%  Similarity=0.099  Sum_probs=49.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      ..++.+|--|+ +|..+..+++.+ ....+|+.++.+++.++...+.+         ..++.++..|+.+.  +..+.. 
T Consensus        25 l~~k~vlVTGa-s~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~d~~~v~~~~~~   94 (277)
T 4dqx_A           25 LNQRVCIVTGG-GSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI---------GSKAFGVRVDVSSAKDAESMVEK   94 (277)
T ss_dssp             TTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---------CTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCceEEEEecCCCHHHHHHHHHH
Confidence            34567777665 455666666554 22348999999987666554442         14677888888762  222111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+++|+++.|...
T Consensus        95 ~~~~~g~iD~lv~nAg~  111 (277)
T 4dqx_A           95 TTAKWGRVDVLVNNAGF  111 (277)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCc
Confidence             1123578999998764

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=88.31  E-value=2.1  Score=31.15  Aligned_cols=46  Identities=20%  Similarity=0.259  Sum_probs=36.3

Q ss_pred             cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++.+||-+|+|. |..+..+++..+ ..+|+++|.+++..+.+++
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~  214 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALARE  214 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH
Confidence            468899999999864 677777887763 3499999999988887755

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=88.22  E-value=3.5  Score=26.15  Aligned_cols=74  Identities=11%  Similarity=0.051  Sum_probs=43.3

Q ss_pred             CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCC-HHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHV-PQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~-~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      .+++-+|+  |..+..+++.+. ....++.+|.+ ++..+...+..         ...+.++.+|..+ ...+ .....+
T Consensus         4 ~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~---------~~~~~~i~gd~~~-~~~l-~~a~i~   70 (153)
T 1id1_A            4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL---------GDNADVIPGDSND-SSVL-KKAGID   70 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH---------CTTCEEEESCTTS-HHHH-HHHTTT
T ss_pred             CcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh---------cCCCeEEEcCCCC-HHHH-HHcChh
Confidence            46777664  777777776652 13389999997 45444443322         1356788888765 2222 122345


Q ss_pred             ceeEEecCc
Q psy5757         109 RYDFLPHAP  117 (139)
Q Consensus       109 ~~D~vi~~~  117 (139)
                      ..|+|+..-
T Consensus        71 ~ad~vi~~~   79 (153)
T 1id1_A           71 RCRAILALS   79 (153)
T ss_dssp             TCSEEEECS
T ss_pred             hCCEEEEec
Confidence            577777654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=88.20  E-value=4.6  Score=28.32  Aligned_cols=86  Identities=10%  Similarity=0.161  Sum_probs=53.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|--|+ +|..+..+++.+ ....+|+.++.+++.++.+.+.+.. +.    ...++.++..|+.+.  +..+.. 
T Consensus        10 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~   84 (281)
T 3svt_A           10 QDRTYLVTGG-GSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGA----NGGAIRYEPTDITNEDETARAVDA   84 (281)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCC----SSCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCceEEEEeCCCCCHHHHHHHHHH
Confidence            4567777665 555566665554 2234899999998888777766655 21    012788888998762  122111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|+++.|...
T Consensus        85 ~~~~~g~id~lv~nAg~  101 (281)
T 3svt_A           85 VTAWHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCc
Confidence             1123578999998864

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=88.14  E-value=4.7  Score=28.31  Aligned_cols=85  Identities=8%  Similarity=0.119  Sum_probs=50.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCC----------------HHHHHHHHHHHHhhccccccCCcEEEEE
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHV----------------PQLVNSSIQNILHSNARLLTDGHIKFVA   91 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~----------------~~~~~~a~~~~~~~~~~~~~~~~i~~~~   91 (139)
                      .++.+|--|+++ ..+..+++.+ ....+|+.+|.+                ++.++...+.+...      ..++.++.
T Consensus        10 ~~k~~lVTGas~-gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~   82 (286)
T 3uve_A           10 EGKVAFVTGAAR-GQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH------NRRIVTAE   82 (286)
T ss_dssp             TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT------TCCEEEEE
T ss_pred             CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc------CCceEEEE
Confidence            456777776554 4555555544 223489999876                55566555554441      15788888


Q ss_pred             ccchhh--hHHHhh--hccCCceeEEecCcccc
Q psy5757          92 LGMIKR--IETVEL--MMKFDRYDFLPHAPAES  120 (139)
Q Consensus        92 ~d~~~~--~~~~~~--~~~~~~~D~vi~~~~~~  120 (139)
                      .|+.+.  +..+..  ....+.+|++|.|....
T Consensus        83 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~  115 (286)
T 3uve_A           83 VDVRDYDALKAAVDSGVEQLGRLDIIVANAGIG  115 (286)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence            888762  222111  11235799999988643

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=88.12  E-value=4.5  Score=28.26  Aligned_cols=86  Identities=13%  Similarity=0.035  Sum_probs=51.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      ..++.+|-.|+ +|..+..+++.+. ...+|+.++.+++.++.+.+.+....     ..++.++..|+.+.  +..+.. 
T Consensus        19 l~~k~~lVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~   92 (267)
T 1vl8_A           19 LRGRVALVTGG-SRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-----GVETMAFRCDVSNYEEVKKLLEA   92 (267)
T ss_dssp             CTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-----CCeEEEEEcCCCCHHHHHHHHHH
Confidence            34567776664 5666666666552 23489999999877766655542200     14677888887751  221111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|++|.|...
T Consensus        93 ~~~~~g~iD~lvnnAg~  109 (267)
T 1vl8_A           93 VKEKFGKLDTVVNAAGI  109 (267)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCc
Confidence             1123568999988753

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=88.10  E-value=2.5  Score=29.80  Aligned_cols=85  Identities=8%  Similarity=0.025  Sum_probs=53.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      ..++.+|--|++ |..+..+++.+ ....+|+.++.+++.++...+.+...      ..++.++..|+.+.  +..+.. 
T Consensus        30 l~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~d~~~v~~~~~~  102 (276)
T 3r1i_A           30 LSGKRALITGAS-TGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV------GGKALPIRCDVTQPDQVRGMLDQ  102 (276)
T ss_dssp             CTTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT------TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCHHHHHHHHHH
Confidence            456777776654 55566665554 12348999999988777766666541      14678888888762  222111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|+++.|...
T Consensus       103 ~~~~~g~iD~lvnnAg~  119 (276)
T 3r1i_A          103 MTGELGGIDIAVCNAGI  119 (276)
T ss_dssp             HHHHHSCCSEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence             1123579999998764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.00  E-value=5  Score=28.06  Aligned_cols=84  Identities=8%  Similarity=0.083  Sum_probs=50.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCC------------HHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHV------------PQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~------------~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      .++.+|--|++ |..+..+++.+ ....+|+.++.+            ...++.+...+...      ..++.++..|+.
T Consensus         9 ~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~   81 (287)
T 3pxx_A            9 QDKVVLVTGGA-RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT------GRKAYTAEVDVR   81 (287)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT------TSCEEEEECCTT
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc------CCceEEEEccCC
Confidence            45677776654 55566655554 123489999876            55566555555441      257888888887


Q ss_pred             hh--hHHHhh--hccCCceeEEecCccc
Q psy5757          96 KR--IETVEL--MMKFDRYDFLPHAPAE  119 (139)
Q Consensus        96 ~~--~~~~~~--~~~~~~~D~vi~~~~~  119 (139)
                      +.  +.++..  ....+.+|++|.|...
T Consensus        82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~  109 (287)
T 3pxx_A           82 DRAAVSRELANAVAEFGKLDVVVANAGI  109 (287)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            62  111111  1123578999998764

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=87.97  E-value=2.6  Score=28.78  Aligned_cols=83  Identities=10%  Similarity=0.047  Sum_probs=50.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +++.+|-.| |+|..+..+++.+. ...+|+.++.+++..+...+.+..       ..+++++..|+.+.  +..+..  
T Consensus         5 ~~k~vlVtG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~   76 (251)
T 1zk4_A            5 DGKVAIITG-GTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-------PDQIQFFQHDSSDEDGWTKLFDAT   76 (251)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc-------cCceEEEECCCCCHHHHHHHHHHH
Confidence            346676655 56777777776552 234899999987766555444322       14688888887751  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.+...
T Consensus        77 ~~~~~~id~li~~Ag~   92 (251)
T 1zk4_A           77 EKAFGPVSTLVNNAGI   92 (251)
T ss_dssp             HHHHSSCCEEEECCCC
T ss_pred             HHHhCCCCEEEECCCC
Confidence            1123468999988753

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=87.91  E-value=5.3  Score=28.13  Aligned_cols=84  Identities=12%  Similarity=0.063  Sum_probs=49.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeC-CHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEH-VPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~-~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|--|+ +|..+..+++.+- ...+|+.++. +++..+...+.+...      ..++.++..|+.+.  +..+.. 
T Consensus        28 ~~k~~lVTGa-s~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~~~  100 (280)
T 4da9_A           28 ARPVAIVTGG-RRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL------GARVIFLRADLADLSSHQATVDA  100 (280)
T ss_dssp             CCCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT------TCCEEEEECCTTSGGGHHHHHHH
T ss_pred             CCCEEEEecC-CCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHH
Confidence            4566776664 5555666665542 2348988885 666666655555441      15788888888762  222111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|++|.|...
T Consensus       101 ~~~~~g~iD~lvnnAg~  117 (280)
T 4da9_A          101 VVAEFGRIDCLVNNAGI  117 (280)
T ss_dssp             HHHHHSCCCEEEEECC-
T ss_pred             HHHHcCCCCEEEECCCc
Confidence             1123578999988764

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=87.91  E-value=2.5  Score=30.44  Aligned_cols=82  Identities=16%  Similarity=0.198  Sum_probs=48.3

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHH----HHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhh
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQ----LVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVEL  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~----~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  103 (139)
                      .+++||-.| |+|..+..+++.+- ...+|++++.++.    .+..........     ...+++++.+|+.+ ...+..
T Consensus        24 ~~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d-~~~~~~   96 (351)
T 3ruf_A           24 SPKTWLITG-VAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTE-----QWSRFCFIEGDIRD-LTTCEQ   96 (351)
T ss_dssp             SCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHH-----HHTTEEEEECCTTC-HHHHHH
T ss_pred             CCCeEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccc-----cCCceEEEEccCCC-HHHHHH
Confidence            457888765 67888888877652 2348999987533    222222211110     01578999999876 333322


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      -  .+.+|+||.....
T Consensus        97 ~--~~~~d~Vih~A~~  110 (351)
T 3ruf_A           97 V--MKGVDHVLHQAAL  110 (351)
T ss_dssp             H--TTTCSEEEECCCC
T ss_pred             H--hcCCCEEEECCcc
Confidence            2  2368999887753

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=87.91  E-value=2.4  Score=30.01  Aligned_cols=84  Identities=12%  Similarity=0.087  Sum_probs=49.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--  102 (139)
                      .+++.+|--|+++| .+..+++.+ ...++|+.++.+++..+.+.+..+.       ..++.++..|+.+.  ..++.  
T Consensus         5 L~gKvalVTGas~G-IG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~v~~   76 (258)
T 4gkb_A            5 LQDKVVIVTGGASG-IGGAISMRLAEERAIPVVFARHAPDGAFLDALAQR-------QPRATYLPVELQDDAQCRDAVAQ   76 (258)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHH-------CTTCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhc-------CCCEEEEEeecCCHHHHHHHHHH
Confidence            35677777776655 444444433 1234888888876554444333333       25677888888762  12211  


Q ss_pred             hhccCCceeEEecCccc
Q psy5757         103 LMMKFDRYDFLPHAPAE  119 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~  119 (139)
                      ....++++|+++.|.-.
T Consensus        77 ~~~~~G~iDiLVNnAGi   93 (258)
T 4gkb_A           77 TIATFGRLDGLVNNAGV   93 (258)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHhCCCCEEEECCCC
Confidence            12235789999998864

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=87.80  E-value=3.7  Score=29.69  Aligned_cols=45  Identities=16%  Similarity=0.338  Sum_probs=34.1

Q ss_pred             cCCCCCeEEEEcc--cCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGS--GSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++++||-.|+  |.|..+..+++..+  ++|++++.+++.++.+++
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~  191 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMKG--AHTIAVASTDEKLKIAKE  191 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            3678899999984  35666777777664  489999999887776654

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=87.79  E-value=4.6  Score=29.05  Aligned_cols=84  Identities=10%  Similarity=0.136  Sum_probs=49.3

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCC------------HHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHV------------PQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~------------~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      .++.+|--|+ +|..+..+++.+ ....+|+.+|.+            ++.++.+.+.+...      ..++.++..|+.
T Consensus        45 ~gk~~lVTGa-s~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~  117 (317)
T 3oec_A           45 QGKVAFITGA-ARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ------GRRIIARQADVR  117 (317)
T ss_dssp             TTCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT------TCCEEEEECCTT
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc------CCeEEEEECCCC
Confidence            4556666554 555666666655 223489998875            55555554444431      146888888887


Q ss_pred             hh--hHHHhh--hccCCceeEEecCccc
Q psy5757          96 KR--IETVEL--MMKFDRYDFLPHAPAE  119 (139)
Q Consensus        96 ~~--~~~~~~--~~~~~~~D~vi~~~~~  119 (139)
                      +.  +..+..  ...++.+|++|.|...
T Consensus       118 d~~~v~~~~~~~~~~~g~iD~lVnnAg~  145 (317)
T 3oec_A          118 DLASLQAVVDEALAEFGHIDILVSNVGI  145 (317)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            62  222111  1124579999998763

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=87.65  E-value=1.7  Score=33.01  Aligned_cols=73  Identities=14%  Similarity=0.167  Sum_probs=46.0

Q ss_pred             CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      .++|+-+|+  |.++..+++.+. ....++.+|.+++.++.+++            ..+.++.+|..+ ...+ ..+..+
T Consensus         4 ~~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~------------~g~~vi~GDat~-~~~L-~~agi~   67 (413)
T 3l9w_A            4 GMRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK------------FGMKVFYGDATR-MDLL-ESAGAA   67 (413)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH------------TTCCCEESCTTC-HHHH-HHTTTT
T ss_pred             CCeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh------------CCCeEEEcCCCC-HHHH-HhcCCC
Confidence            356777665  666666666552 13489999999998887753            234578888776 2222 223345


Q ss_pred             ceeEEecCcc
Q psy5757         109 RYDFLPHAPA  118 (139)
Q Consensus       109 ~~D~vi~~~~  118 (139)
                      ..|+|+....
T Consensus        68 ~A~~viv~~~   77 (413)
T 3l9w_A           68 KAEVLINAID   77 (413)
T ss_dssp             TCSEEEECCS
T ss_pred             ccCEEEECCC
Confidence            6777766543

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=87.52  E-value=4.7  Score=29.49  Aligned_cols=45  Identities=18%  Similarity=0.244  Sum_probs=32.8

Q ss_pred             cCCCCCeEEEEcc--cCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGS--GSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++++||-.|+  |.|.....+++..+  ++|++++.+++..+.+++
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~~  213 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVLQ  213 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCChhHHHHHHH
Confidence            3678899999996  34556666666654  489999999887775543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=87.51  E-value=3.1  Score=27.19  Aligned_cols=72  Identities=11%  Similarity=0.069  Sum_probs=40.7

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCC--CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc-c
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNS--TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM-K  106 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~--~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-~  106 (139)
                      +++|+-+|+  |..+..+++.+..  ..+|+++|.+++.++.+++            ..+.++.+|..+ ...+ ... .
T Consensus        39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~------------~g~~~~~gd~~~-~~~l-~~~~~  102 (183)
T 3c85_A           39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS------------EGRNVISGDATD-PDFW-ERILD  102 (183)
T ss_dssp             TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH------------TTCCEEECCTTC-HHHH-HTBCS
T ss_pred             CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH------------CCCCEEEcCCCC-HHHH-HhccC
Confidence            457888775  5555555554421  2379999999877665543            133456666543 1211 122 2


Q ss_pred             CCceeEEecCc
Q psy5757         107 FDRYDFLPHAP  117 (139)
Q Consensus       107 ~~~~D~vi~~~  117 (139)
                      .+.+|+|+...
T Consensus       103 ~~~ad~vi~~~  113 (183)
T 3c85_A          103 TGHVKLVLLAM  113 (183)
T ss_dssp             CCCCCEEEECC
T ss_pred             CCCCCEEEEeC
Confidence            34578777643

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=87.49  E-value=3.4  Score=29.19  Aligned_cols=85  Identities=8%  Similarity=0.120  Sum_probs=52.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++++|-.| |+|..+..+++.+. ...+|+.++.++...+...+.+....     ..++.++..|+.+.  +..+..  
T Consensus        25 ~~k~vlITG-asggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~   98 (302)
T 1w6u_A           25 QGKVAFITG-GGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-----GNKVHAIQCDVRDPDMVQNTVSEL   98 (302)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc-----CCceEEEEeCCCCHHHHHHHHHHH
Confidence            456777666 45666777666552 23489999999877766655554310     15688889998751  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.+...
T Consensus        99 ~~~~g~id~li~~Ag~  114 (302)
T 1w6u_A           99 IKVAGHPNIVINNAAG  114 (302)
T ss_dssp             HHHTCSCSEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1124578999988764

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=87.49  E-value=5.7  Score=27.85  Aligned_cols=84  Identities=10%  Similarity=0.093  Sum_probs=51.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +++.+|-.|+ +|..+..+++.+. ...+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+..  
T Consensus        21 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~~~~~v~~~~~~~   93 (277)
T 2rhc_B           21 DSEVALVTGA-TSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA------GVEADGRTCDVRSVPEIEALVAAV   93 (277)
T ss_dssp             TSCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEECCCCCHHHHHHHHHHH
Confidence            4567777664 5666666666552 2348999999987776665555431      14677888887752  121111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.|...
T Consensus        94 ~~~~g~iD~lv~~Ag~  109 (277)
T 2rhc_B           94 VERYGPVDVLVNNAGR  109 (277)
T ss_dssp             HHHTCSCSEEEECCCC
T ss_pred             HHHhCCCCEEEECCCC
Confidence            1124578999988753

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=87.48  E-value=5.1  Score=27.81  Aligned_cols=83  Identities=12%  Similarity=0.122  Sum_probs=48.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEE-eCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGI-EHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~-d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|--|++ |..+..+++.+. ...+|+.+ +.+++..+.+.+.+...      ..++.++..|+.+.  +..+.. 
T Consensus         7 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~   79 (259)
T 3edm_A            7 TNRTIVVAGAG-RDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL------GRSALAIKADLTNAAEVEAAISA   79 (259)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT------TSCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHH
Confidence            45677777654 455555555541 23477777 66666666665555441      14678888888762  222111 


Q ss_pred             -hccCCceeEEecCcc
Q psy5757         104 -MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~  118 (139)
                       ....+.+|+++.|..
T Consensus        80 ~~~~~g~id~lv~nAg   95 (259)
T 3edm_A           80 AADKFGEIHGLVHVAG   95 (259)
T ss_dssp             HHHHHCSEEEEEECCC
T ss_pred             HHHHhCCCCEEEECCC
Confidence             112357999998875

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=87.48  E-value=1.1  Score=33.29  Aligned_cols=45  Identities=16%  Similarity=0.225  Sum_probs=35.6

Q ss_pred             cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++.+||-+|+|. |..+..+++..+.  +|++++.+++.++.+++
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga--~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH
Confidence            368899999999874 6677777777653  89999999888887765

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=87.45  E-value=5.4  Score=28.36  Aligned_cols=84  Identities=11%  Similarity=0.124  Sum_probs=50.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCC------------HHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHV------------PQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~------------~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      .++.+|--|++ +..+..+++.+ ....+|+.++.+            ++.++.+.+.+...      ..++.++..|+.
T Consensus        27 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~   99 (299)
T 3t7c_A           27 EGKVAFITGAA-RGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL------GRRIIASQVDVR   99 (299)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT------TCCEEEEECCTT
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhc------CCceEEEECCCC
Confidence            45677777655 45555555544 223489999876            55565555554441      157888889987


Q ss_pred             hh--hHHHhh--hccCCceeEEecCccc
Q psy5757          96 KR--IETVEL--MMKFDRYDFLPHAPAE  119 (139)
Q Consensus        96 ~~--~~~~~~--~~~~~~~D~vi~~~~~  119 (139)
                      +.  +..+..  ....+.+|++|.|...
T Consensus       100 ~~~~v~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          100 DFDAMQAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            62  122111  1124579999988764

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=87.43  E-value=4.9  Score=29.71  Aligned_cols=45  Identities=20%  Similarity=0.258  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          27 LNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        27 ~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      ++++.+||-+|+| .|..+..+++..+ -.+|++++.+++..+.+++
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~  238 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE  238 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH
Confidence            6788999999965 3566667777654 1389999999988877763

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=87.43  E-value=1.4  Score=32.16  Aligned_cols=44  Identities=18%  Similarity=0.359  Sum_probs=34.4

Q ss_pred             CCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          27 LNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        27 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      ++++.+||-+|+|. |..+..+++..+.  +|++++.+++..+.+++
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHH
Confidence            67899999999763 5667777776653  79999999988887754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=87.42  E-value=3.9  Score=29.52  Aligned_cols=43  Identities=16%  Similarity=0.220  Sum_probs=31.9

Q ss_pred             cCCCCCeEEEEcc--cCChhHHHHHHHcCCCceEEEEeCCHHHHHHH
Q psy5757          26 HLNENSKVLEIGS--GSGYLTNMISELMNSTGQVIGIEHVPQLVNSS   70 (139)
Q Consensus        26 ~~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a   70 (139)
                      .+++++++|-.|+  |.|.....+++..+  ++|++++.+++.++.+
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G--~~V~~~~~~~~~~~~~  186 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYL  186 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHTT--CEEEEEESSHHHHHHH
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHH
Confidence            3678899999997  34555556666554  3899999998877776

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=87.40  E-value=4.7  Score=27.74  Aligned_cols=84  Identities=10%  Similarity=0.131  Sum_probs=51.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|+ +|..+..+++.+. ...+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+..  
T Consensus         6 ~~k~~lVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~~~~~~~~~~~~~   78 (247)
T 2jah_A            6 QGKVALITGA-SSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAA------GAKVHVLELDVADRQGVDAAVAST   78 (247)
T ss_dssp             TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHHHH
Confidence            4567777664 5666666666552 2348999999987777665555431      14678888888762  221111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        79 ~~~~g~id~lv~nAg~   94 (247)
T 2jah_A           79 VEALGGLDILVNNAGI   94 (247)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1123578999988753

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=87.39  E-value=4.8  Score=27.84  Aligned_cols=85  Identities=13%  Similarity=0.128  Sum_probs=50.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +++.+|-.|+ +|..+..+++.+. ...+|+.++.+++.++.+.+.+....     ..++.++..|+.+.  +..+..  
T Consensus         6 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   79 (263)
T 3ai3_A            6 SGKVAVITGS-SSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF-----GVRVLEVAVDVATPEGVDAVVESV   79 (263)
T ss_dssp             TTCEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhc-----CCceEEEEcCCCCHHHHHHHHHHH
Confidence            4567776664 5666666666552 23489999999877666555543310     14678888888762  221111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        80 ~~~~g~id~lv~~Ag~   95 (263)
T 3ai3_A           80 RSSFGGADILVNNAGT   95 (263)
T ss_dssp             HHHHSSCSEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1123468999988753

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=87.36  E-value=4.1  Score=28.55  Aligned_cols=81  Identities=12%  Similarity=0.128  Sum_probs=49.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++++|--| |+|..+..+++.+ ....+|+..+.+++.++...+.+         ..++.++..|+.+.  +..+..  
T Consensus        26 ~gk~vlVTG-as~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~d~~~v~~~~~~~   95 (266)
T 3grp_A           26 TGRKALVTG-ATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL---------GKDVFVFSANLSDRKSIKQLAEVA   95 (266)
T ss_dssp             TTCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------CSSEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCceEEEEeecCCHHHHHHHHHHH
Confidence            456677665 4566666666655 22348999999987766554432         14678888888762  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.|...
T Consensus        96 ~~~~g~iD~lvnnAg~  111 (266)
T 3grp_A           96 EREMEGIDILVNNAGI  111 (266)
T ss_dssp             HHHHTSCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1123579999998763

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=87.29  E-value=0.78  Score=33.56  Aligned_cols=45  Identities=16%  Similarity=0.186  Sum_probs=35.8

Q ss_pred             cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++.+||-+|+|. |..+..+++..+  ++|++++.+++..+.+++
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDALS  218 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHh
Confidence            368899999999864 677777787765  389999999888877755

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=87.19  E-value=5.4  Score=27.92  Aligned_cols=85  Identities=14%  Similarity=0.142  Sum_probs=50.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeC-CHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEH-VPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~-~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|--| |+|..+..+++.+- ...+|+..+. ++...+...+.+...      ..++.++..|+.+.  +..+.. 
T Consensus        27 ~~k~vlVTG-as~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~d~~~v~~~~~~   99 (269)
T 4dmm_A           27 TDRIALVTG-ASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA------GGEAFAVKADVSQESEVEALFAA   99 (269)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHHH
Confidence            456666655 55666666666552 2348888887 666666655555441      14688888898762  222111 


Q ss_pred             -hccCCceeEEecCcccc
Q psy5757         104 -MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~~  120 (139)
                       ....+.+|+++.|....
T Consensus       100 ~~~~~g~id~lv~nAg~~  117 (269)
T 4dmm_A          100 VIERWGRLDVLVNNAGIT  117 (269)
T ss_dssp             HHHHHSCCCEEEECCCCC
T ss_pred             HHHHcCCCCEEEECCCCC
Confidence             11235789999987643

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=87.17  E-value=5.7  Score=27.47  Aligned_cols=81  Identities=14%  Similarity=0.082  Sum_probs=50.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~  103 (139)
                      .++.+|-.| |+|..+..+++.+ ....+|+.++.+++..+...+.+.         .++.++..|+.+.  +..+.  .
T Consensus         7 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~   76 (259)
T 4e6p_A            7 EGKSALITG-SARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG---------PAAYAVQMDVTRQDSIDAAIAAT   76 (259)
T ss_dssp             TTCEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CCceEEEeeCCCHHHHHHHHHHH
Confidence            456777766 4566666666554 223489999999876665554431         4677888887751  22111  1


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        77 ~~~~g~id~lv~~Ag~   92 (259)
T 4e6p_A           77 VEHAGGLDILVNNAAL   92 (259)
T ss_dssp             HHHSSSCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCc
Confidence            1234579999998764

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=87.15  E-value=5.8  Score=27.50  Aligned_cols=84  Identities=8%  Similarity=0.083  Sum_probs=51.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|+ +|..+..+++.+- ...+|+.++.+++.++.+.+.+...      ..++.++..|+.+.  +..+..  
T Consensus         6 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~   78 (262)
T 1zem_A            6 NGKVCLVTGA-GGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK------GVEARSYVCDVTSEEAVIGTVDSV   78 (262)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------TSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHHH
Confidence            4567776665 5566666666552 2348999999987776665555441      14678888887752  111111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        79 ~~~~g~id~lv~nAg~   94 (262)
T 1zem_A           79 VRDFGKIDFLFNNAGY   94 (262)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCCCEEEECCCC
Confidence            1123578999998754

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=87.12  E-value=5.2  Score=27.75  Aligned_cols=84  Identities=13%  Similarity=0.072  Sum_probs=50.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEE-eCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGI-EHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~-d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      +++.+|--| |+|..+..+++.+- ...+|+.. +.+++..+.+.+.+...      ..++.++..|+.+.  +..+.. 
T Consensus         3 ~~k~vlVTG-as~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~   75 (258)
T 3oid_A            3 QNKCALVTG-SSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKL------GVKVLVVKANVGQPAKIKEMFQQ   75 (258)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEec-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHH
Confidence            345666555 55666666666552 23477775 78877777666665541      14688888898762  222111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+++|+++.|...
T Consensus        76 ~~~~~g~id~lv~nAg~   92 (258)
T 3oid_A           76 IDETFGRLDVFVNNAAS   92 (258)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence             1123578999998853

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=87.08  E-value=3.6  Score=28.99  Aligned_cols=83  Identities=12%  Similarity=0.092  Sum_probs=50.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|+ +|..+..+++.+. ...+|+.++.+++.++...+.+..       ..++.++..|+.+.  +..+..  
T Consensus        28 ~~k~vlVTGa-s~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~Dv~d~~~v~~~~~~~   99 (276)
T 2b4q_A           28 AGRIALVTGG-SRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSA-------YGDCQAIPADLSSEAGARRLAQAL   99 (276)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTT-------SSCEEECCCCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCceEEEEeeCCCHHHHHHHHHHH
Confidence            4567776664 5666666666552 234899999998766655544432       13677788887762  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.|...
T Consensus       100 ~~~~g~iD~lvnnAg~  115 (276)
T 2b4q_A          100 GELSARLDILVNNAGT  115 (276)
T ss_dssp             HHHCSCCSEEEECCCC
T ss_pred             HHhcCCCCEEEECCCC
Confidence            1124578999988763

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=87.05  E-value=4.8  Score=27.79  Aligned_cols=83  Identities=17%  Similarity=0.168  Sum_probs=47.8

Q ss_pred             CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHH--HHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQL--VNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~--~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      ++.+|-.|+ +|..+..+++.+. ...+|+.++.+++.  ++...+.+...      ..++.++..|+.+.  +..+.. 
T Consensus         2 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~   74 (258)
T 3a28_C            2 SKVAMVTGG-AQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAA------DQKAVFVGLDVTDKANFDSAIDE   74 (258)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHH
Confidence            356666664 5556666655441 12389999988765  55544444331      14678888888752  222111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|++|.|...
T Consensus        75 ~~~~~g~iD~lv~nAg~   91 (258)
T 3a28_C           75 AAEKLGGFDVLVNNAGI   91 (258)
T ss_dssp             HHHHHTCCCEEEECCCC
T ss_pred             HHHHhCCCCEEEECCCC
Confidence             1123578999988764

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=87.03  E-value=4.7  Score=27.69  Aligned_cols=83  Identities=14%  Similarity=0.112  Sum_probs=51.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN--STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~--~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      +++++|-.| |+|..+..+++.+-  ...+|+.++.++...+.+.+.+...      ..++.++..|+.+.  +..+.. 
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~~~   75 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE------GLSPRFHQLDIDDLQSIRALRDF   75 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT------TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc------CCeeEEEECCCCCHHHHHHHHHH
Confidence            345666555 67777777777652  2358999999887766665555441      14678888887751  222111 


Q ss_pred             -hccCCceeEEecCcc
Q psy5757         104 -MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~  118 (139)
                       ....+.+|++|.+..
T Consensus        76 ~~~~~g~id~li~~Ag   91 (276)
T 1wma_A           76 LRKEYGGLDVLVNNAG   91 (276)
T ss_dssp             HHHHHSSEEEEEECCC
T ss_pred             HHHhcCCCCEEEECCc
Confidence             112346999998875

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=86.98  E-value=4.2  Score=28.24  Aligned_cols=82  Identities=16%  Similarity=0.194  Sum_probs=49.3

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++++|-.| |+|..+..+++.+- ...+|+.++.++...+...+.+..       ..++.++..|+.+.  +..+..  
T Consensus        15 ~~k~vlITG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~   86 (278)
T 2bgk_A           15 QDKVAIITG-GAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-------PDVISFVHCDVTKDEDVRNLVDTT   86 (278)
T ss_dssp             TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCC-------CCceEEEECCCCCHHHHHHHHHHH
Confidence            456777766 46677777766552 234899999887665544333322       13688888998761  222111  


Q ss_pred             hccCCceeEEecCcc
Q psy5757         104 MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~  118 (139)
                      ....+.+|++|.+..
T Consensus        87 ~~~~~~id~li~~Ag  101 (278)
T 2bgk_A           87 IAKHGKLDIMFGNVG  101 (278)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCc
Confidence            111346899998775

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=86.97  E-value=5.9  Score=27.47  Aligned_cols=86  Identities=13%  Similarity=0.130  Sum_probs=51.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|+ +|..+..+++.+. ...+|+.++.+++.++.+.+.+...    ....++.++..|+.+.  +..+..  
T Consensus        12 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~D~~~~~~v~~~~~~~   86 (267)
T 1iy8_A           12 TDRVVLITGG-GSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLET----APDAEVLTTVADVSDEAQVEAYVTAT   86 (267)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----CTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh----cCCceEEEEEccCCCHHHHHHHHHHH
Confidence            4567777665 5666666666552 2348999999987776665554331    0014678888888762  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.|...
T Consensus        87 ~~~~g~id~lv~nAg~  102 (267)
T 1iy8_A           87 TERFGRIDGFFNNAGI  102 (267)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHHcCCCCEEEECCCc
Confidence            1123568999988753

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=86.95  E-value=5.2  Score=27.14  Aligned_cols=85  Identities=14%  Similarity=0.110  Sum_probs=51.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.| |+|..+..+++.+- ...+|+.++.+++..+...+.+....     ..++.++..|+.+.  +..+..  
T Consensus         6 ~~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~   79 (248)
T 2pnf_A            6 QGKVSLVTG-STRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY-----GVKAHGVEMNLLSEESINKAFEEI   79 (248)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH-----CCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc-----CCceEEEEccCCCHHHHHHHHHHH
Confidence            456666555 56777777776552 23489999999877666555443200     14678888887751  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.+...
T Consensus        80 ~~~~~~~d~vi~~Ag~   95 (248)
T 2pnf_A           80 YNLVDGIDILVNNAGI   95 (248)
T ss_dssp             HHHSSCCSEEEECCCC
T ss_pred             HHhcCCCCEEEECCCC
Confidence            1123568999988753

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=86.87  E-value=4.8  Score=28.42  Aligned_cols=89  Identities=9%  Similarity=0.137  Sum_probs=52.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.| |+|..+..+++.+. ...+|+.++.+++.++.+.+.+...... ....++.++..|+.+.  +..+..  
T Consensus        17 ~~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~   94 (303)
T 1yxm_A           17 QGQVAIVTG-GATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP-TKQARVIPIQCNIRNEEEVNNLVKST   94 (303)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT-TCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccc-cCCccEEEEecCCCCHHHHHHHHHHH
Confidence            456777766 56777777766552 2348999999987776665554331000 0024688888998762  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.+...
T Consensus        95 ~~~~g~id~li~~Ag~  110 (303)
T 1yxm_A           95 LDTFGKINFLVNNGGG  110 (303)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1123468999998763

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=86.73  E-value=4.3  Score=27.67  Aligned_cols=72  Identities=8%  Similarity=-0.092  Sum_probs=45.3

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      ..++++-+|+  |..+..+++.+...+.++.+|.+++.++.+.    .         ++.++.+|..+ ...+ ..+..+
T Consensus         8 ~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~----~---------~~~~i~gd~~~-~~~l-~~a~i~   70 (234)
T 2aef_A            8 KSRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR----S---------GANFVHGDPTR-VSDL-EKANVR   70 (234)
T ss_dssp             --CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH----T---------TCEEEESCTTC-HHHH-HHTTCT
T ss_pred             CCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh----c---------CCeEEEcCCCC-HHHH-HhcCcc
Confidence            4457887776  7899999998854334889999987765543    2         35677888765 2222 122344


Q ss_pred             ceeEEecCc
Q psy5757         109 RYDFLPHAP  117 (139)
Q Consensus       109 ~~D~vi~~~  117 (139)
                      ..|+++...
T Consensus        71 ~ad~vi~~~   79 (234)
T 2aef_A           71 GARAVIVDL   79 (234)
T ss_dssp             TCSEEEECC
T ss_pred             hhcEEEEcC
Confidence            567776543

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=86.70  E-value=1.9  Score=31.30  Aligned_cols=71  Identities=8%  Similarity=-0.055  Sum_probs=46.9

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      .++++-+|  .|..+..+++.....+.++.+|.+++.++ +++            .++.++.+|..+ .+.+ ..+..+.
T Consensus       115 ~~~viI~G--~G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~~------------~~~~~i~gd~~~-~~~L-~~a~i~~  177 (336)
T 1lnq_A          115 SRHVVICG--WSESTLECLRELRGSEVFVLAEDENVRKK-VLR------------SGANFVHGDPTR-VSDL-EKANVRG  177 (336)
T ss_dssp             -CEEEEES--CCHHHHHHHTTGGGSCEEEEESCGGGHHH-HHH------------TTCEEEESCTTS-HHHH-HHTCSTT
T ss_pred             cCCEEEEC--CcHHHHHHHHHHHhCCcEEEEeCChhhhh-HHh------------CCcEEEEeCCCC-HHHH-HhcChhh
Confidence            34677766  48888999988743334899999998776 432            356788899776 2222 2334556


Q ss_pred             eeEEecCc
Q psy5757         110 YDFLPHAP  117 (139)
Q Consensus       110 ~D~vi~~~  117 (139)
                      .|.++...
T Consensus       178 a~~vi~~~  185 (336)
T 1lnq_A          178 ARAVIVDL  185 (336)
T ss_dssp             EEEEEECC
T ss_pred             ccEEEEcC
Confidence            78877644

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=86.70  E-value=3.3  Score=31.17  Aligned_cols=78  Identities=14%  Similarity=0.151  Sum_probs=47.7

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCC----ceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--hhHHHhhh
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNST----GQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--RIETVELM  104 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~----~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~  104 (139)
                      ++|+-+||  |..+..+++.+...    .+++..+.+++..+...+.+...     ...++..+..|+.+  .+..+...
T Consensus         2 ~kVlIiGa--GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~-----~~~~~~~~~~D~~d~~~l~~~l~~   74 (405)
T 4ina_A            2 AKVLQIGA--GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAK-----GYGEIDITTVDADSIEELVALINE   74 (405)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHT-----TCCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhh-----cCCceEEEEecCCCHHHHHHHHHh
Confidence            36888887  56777777765322    27899999988777665555430     01357777778654  12222111


Q ss_pred             ccCCceeEEecCcc
Q psy5757         105 MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 ~~~~~~D~vi~~~~  118 (139)
                         ..+|+|+.+..
T Consensus        75 ---~~~DvVin~ag   85 (405)
T 4ina_A           75 ---VKPQIVLNIAL   85 (405)
T ss_dssp             ---HCCSEEEECSC
T ss_pred             ---hCCCEEEECCC
Confidence               13798887754

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=86.70  E-value=5.4  Score=27.24  Aligned_cols=80  Identities=8%  Similarity=-0.007  Sum_probs=49.0

Q ss_pred             CCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757          30 NSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M  104 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~  104 (139)
                      ++.+|-.|+ +|..+..+++.+ ....+|+.++.+++.++...+.+.         .++.++..|+.+.  +..+..  .
T Consensus         3 ~k~vlVTGa-s~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~   72 (235)
T 3l6e_A            3 LGHIIVTGA-GSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG---------NAVIGIVADLAHHEDVDVAFAAAV   72 (235)
T ss_dssp             CCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---------CCceEEECCCCCHHHHHHHHHHHH
Confidence            345666664 455666666554 223489999999887776655542         3578888888762  221111  1


Q ss_pred             ccCCceeEEecCccc
Q psy5757         105 MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~  119 (139)
                      ...+.+|+++.|...
T Consensus        73 ~~~g~id~lvnnAg~   87 (235)
T 3l6e_A           73 EWGGLPELVLHCAGT   87 (235)
T ss_dssp             HHHCSCSEEEEECCC
T ss_pred             HhcCCCcEEEECCCC
Confidence            123578999988764

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=86.60  E-value=6.3  Score=27.55  Aligned_cols=79  Identities=11%  Similarity=0.125  Sum_probs=49.4

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-  104 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-  104 (139)
                      .++.+|-.|+ +|..+..+++.+ ....+|+.++.+++.++.+.+.+         ..++.++..|+.+.  +..+... 
T Consensus        29 ~~k~vlVTGa-s~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~~~~~v~~~~~~~   98 (281)
T 3ppi_A           29 EGASAIVSGG-AGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL---------GNRAEFVSTNVTSEDSVLAAIEAA   98 (281)
T ss_dssp             TTEEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------CTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---------CCceEEEEcCCCCHHHHHHHHHHH
Confidence            4556776665 555666666554 22348999999987776665544         14688888888762  2222111 


Q ss_pred             ccCCceeEEecCc
Q psy5757         105 MKFDRYDFLPHAP  117 (139)
Q Consensus       105 ~~~~~~D~vi~~~  117 (139)
                      ...+.+|+++.+.
T Consensus        99 ~~~~~id~lv~~a  111 (281)
T 3ppi_A           99 NQLGRLRYAVVAH  111 (281)
T ss_dssp             TTSSEEEEEEECC
T ss_pred             HHhCCCCeEEEcc
Confidence            2345789999883

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=86.53  E-value=3.9  Score=24.98  Aligned_cols=74  Identities=11%  Similarity=0.122  Sum_probs=40.9

Q ss_pred             CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      +++|+-+|+  |..+..+++.+. ...+++.+|.+++.++.+++.           ..+.++.+|..+ ...+. .....
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-----------~~~~~~~~d~~~-~~~l~-~~~~~   68 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-----------IDALVINGDCTK-IKTLE-DAGIE   68 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----------CSSEEEESCTTS-HHHHH-HTTTT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh-----------cCcEEEEcCCCC-HHHHH-HcCcc
Confidence            467888766  666666665542 123899999998766554332           133455666443 22111 11234


Q ss_pred             ceeEEecCcc
Q psy5757         109 RYDFLPHAPA  118 (139)
Q Consensus       109 ~~D~vi~~~~  118 (139)
                      .+|+|+....
T Consensus        69 ~~d~vi~~~~   78 (140)
T 1lss_A           69 DADMYIAVTG   78 (140)
T ss_dssp             TCSEEEECCS
T ss_pred             cCCEEEEeeC
Confidence            5787766543

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=86.44  E-value=3.7  Score=28.41  Aligned_cols=83  Identities=14%  Similarity=0.087  Sum_probs=50.4

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-  104 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-  104 (139)
                      .++++|-.| |+|..+..+++.+- ...+|+.++.++..++...+.+...      ..++.++..|+.+.  +..+... 
T Consensus        13 ~~k~vlITG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~   85 (266)
T 1xq1_A           13 KAKTVLVTG-GTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK------GFQVTGSVCDASLRPEREKLMQTV   85 (266)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeeEEEECCCCCHHHHHHHHHHH
Confidence            456676655 56777777776552 2348999999887666655555431      14678888887752  2221111 


Q ss_pred             -ccC-CceeEEecCcc
Q psy5757         105 -MKF-DRYDFLPHAPA  118 (139)
Q Consensus       105 -~~~-~~~D~vi~~~~  118 (139)
                       ... +.+|++|.+..
T Consensus        86 ~~~~~~~id~li~~Ag  101 (266)
T 1xq1_A           86 SSMFGGKLDILINNLG  101 (266)
T ss_dssp             HHHHTTCCSEEEEECC
T ss_pred             HHHhCCCCcEEEECCC
Confidence             011 56899998875

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=86.30  E-value=5.2  Score=28.14  Aligned_cols=81  Identities=11%  Similarity=0.055  Sum_probs=49.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|++ +..+..+++.+ ....+|+.++.+++.++...+..         ..++.++..|+.+.  +..+..  
T Consensus         4 ~gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~   73 (281)
T 3zv4_A            4 TGEVALITGGA-SGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH---------GGNAVGVVGDVRSLQDQKRAAERC   73 (281)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---------BTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc---------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            45677777654 55555555554 12348999999987666544432         14678888888762  121111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        74 ~~~~g~iD~lvnnAg~   89 (281)
T 3zv4_A           74 LAAFGKIDTLIPNAGI   89 (281)
T ss_dssp             HHHHSCCCEEECCCCC
T ss_pred             HHhcCCCCEEEECCCc
Confidence            1124578999999864

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=86.21  E-value=3.6  Score=28.38  Aligned_cols=81  Identities=16%  Similarity=0.195  Sum_probs=49.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|++ |..+..+++.+ ....+|+.++.+++.++...+.+         ..++.++..|+.+.  +.++..  
T Consensus         8 ~~k~vlITGas-~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~   77 (261)
T 3n74_A            8 EGKVALITGAG-SGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---------GDAALAVAADISKEADVDAAVEAA   77 (261)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------CTTEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---------CCceEEEEecCCCHHHHHHHHHHH
Confidence            45677777765 45555555544 12348999999987776665543         14678888887762  121111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        78 ~~~~g~id~li~~Ag~   93 (261)
T 3n74_A           78 LSKFGKVDILVNNAGI   93 (261)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCcc
Confidence            1123468999998764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=86.19  E-value=6.5  Score=27.82  Aligned_cols=84  Identities=10%  Similarity=0.063  Sum_probs=48.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHH-HHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQL-VNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--  102 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~-~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--  102 (139)
                      +++.+|--|+ +|..+..+++.+- ...+|+.++.++.. .+.+.+.....      ..++.++..|+.+.  +..+.  
T Consensus        46 ~gk~vlVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~~~  118 (291)
T 3ijr_A           46 KGKNVLITGG-DSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKE------GVKCVLLPGDLSDEQHCKDIVQE  118 (291)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT------TCCEEEEESCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHHH
Confidence            4567777665 5556666666552 23488899887653 33344433331      14788888998762  12211  


Q ss_pred             hhccCCceeEEecCccc
Q psy5757         103 LMMKFDRYDFLPHAPAE  119 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~  119 (139)
                      .....+.+|++|.|...
T Consensus       119 ~~~~~g~iD~lvnnAg~  135 (291)
T 3ijr_A          119 TVRQLGSLNILVNNVAQ  135 (291)
T ss_dssp             HHHHHSSCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence            11124578999988653

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=86.04  E-value=3.4  Score=28.42  Aligned_cols=81  Identities=11%  Similarity=0.077  Sum_probs=46.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCC-Cce-EEEEeCCHH--HHHHHHHHHHhhccccccCCcEEEEEccchhh---hHHH
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNS-TGQ-VIGIEHVPQ--LVNSSIQNILHSNARLLTDGHIKFVALGMIKR---IETV  101 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~-~~~-v~~~d~~~~--~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~  101 (139)
                      +++++|-.|+ +|..+..+++.+-. ..+ |+.++.++.  .++...+..        ...++.++..|+.+.   +.++
T Consensus         4 ~~k~vlVtGa-s~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~--------~~~~~~~~~~D~~~~~~~~~~~   74 (254)
T 1sby_A            4 TNKNVIFVAA-LGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAIN--------PKVNITFHTYDVTVPVAESKKL   74 (254)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHC--------TTSEEEEEECCTTSCHHHHHHH
T ss_pred             CCcEEEEECC-CChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhC--------CCceEEEEEEecCCChHHHHHH
Confidence            4567877775 67777777776632 234 888887752  222222111        114678888888752   2221


Q ss_pred             hh--hccCCceeEEecCcc
Q psy5757         102 EL--MMKFDRYDFLPHAPA  118 (139)
Q Consensus       102 ~~--~~~~~~~D~vi~~~~  118 (139)
                      ..  ....+.+|++|.|..
T Consensus        75 ~~~~~~~~g~id~lv~~Ag   93 (254)
T 1sby_A           75 LKKIFDQLKTVDILINGAG   93 (254)
T ss_dssp             HHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHhcCCCCEEEECCc
Confidence            11  112346899998875

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=86.02  E-value=6  Score=26.98  Aligned_cols=81  Identities=9%  Similarity=0.083  Sum_probs=48.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcE-EEEEccchhh--hHHHhhh
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHI-KFVALGMIKR--IETVELM  104 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i-~~~~~d~~~~--~~~~~~~  104 (139)
                      .++.+|-.| |+|..+..+++.+. ...+|+.++.+++.++...+.+.         .++ .++..|+.+.  +..+...
T Consensus        10 ~~k~vlITG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~   79 (254)
T 2wsb_A           10 DGACAAVTG-AGSGIGLEICRAFAASGARLILIDREAAALDRAAQELG---------AAVAARIVADVTDAEAMTAAAAE   79 (254)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---------ccceeEEEEecCCHHHHHHHHHH
Confidence            456777666 55677777766552 23489999998776655544431         345 7788887752  2221110


Q ss_pred             -ccCCceeEEecCccc
Q psy5757         105 -MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 -~~~~~~D~vi~~~~~  119 (139)
                       ...+.+|++|.+...
T Consensus        80 ~~~~~~id~li~~Ag~   95 (254)
T 2wsb_A           80 AEAVAPVSILVNSAGI   95 (254)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHhhCCCcEEEECCcc
Confidence             013568999988753

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=85.97  E-value=6.2  Score=26.72  Aligned_cols=79  Identities=14%  Similarity=0.109  Sum_probs=47.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhh-cc
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELM-MK  106 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~  106 (139)
                      +++++|-.| |+|..+..+++.+. ...+|+.++.++...+...+..          .+++++..|+.+ ...+..- ..
T Consensus         6 ~~~~vlVTG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~D~~~-~~~~~~~~~~   73 (244)
T 1cyd_A            6 SGLRALVTG-AGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----------PGIEPVCVDLGD-WDATEKALGG   73 (244)
T ss_dssp             TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTC-HHHHHHHHTT
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----------cCCCcEEecCCC-HHHHHHHHHH
Confidence            456777665 56777777766552 2348999999876554433221          345667888776 2222111 12


Q ss_pred             CCceeEEecCccc
Q psy5757         107 FDRYDFLPHAPAE  119 (139)
Q Consensus       107 ~~~~D~vi~~~~~  119 (139)
                      .+.+|+++.+...
T Consensus        74 ~~~id~vi~~Ag~   86 (244)
T 1cyd_A           74 IGPVDLLVNNAAL   86 (244)
T ss_dssp             CCCCSEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            4568999988763

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=85.96  E-value=6.1  Score=27.33  Aligned_cols=87  Identities=14%  Similarity=0.044  Sum_probs=50.9

Q ss_pred             CCCCeEEEEcccCC-hhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh
Q psy5757          28 NENSKVLEIGSGSG-YLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G-~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~  103 (139)
                      ..++++|-.|++.+ +.+..+++.+ ....+|+.++.++...+.+.+....     ....++.++..|+.+.  +..+..
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~~D~~~~~~v~~~~~   79 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGT-----LDRNDSIILPCDVTNDAEIETCFA   79 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHT-----SSSCCCEEEECCCSSSHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHh-----cCCCCceEEeCCCCCHHHHHHHHH
Confidence            35678888887632 2444444444 1234899998887655555555444     1124788888888761  222211


Q ss_pred             --hccCCceeEEecCccc
Q psy5757         104 --MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 --~~~~~~~D~vi~~~~~  119 (139)
                        ....+.+|+++.+...
T Consensus        80 ~~~~~~g~id~li~~Ag~   97 (266)
T 3oig_A           80 SIKEQVGVIHGIAHCIAF   97 (266)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHHhCCeeEEEEcccc
Confidence              1123578999988764

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=85.87  E-value=7.2  Score=27.37  Aligned_cols=83  Identities=18%  Similarity=0.163  Sum_probs=51.8

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M  104 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~  104 (139)
                      ++.+|-.| |+|..+..+++.+.. ..+|+.++.+++..+.+.+.+...      ..++.++..|+.+.  +..+..  .
T Consensus        44 ~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~d~~~v~~~~~~~~  116 (285)
T 2c07_A           44 NKVALVTG-AGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF------GYESSGYAGDVSKKEEISEVINKIL  116 (285)
T ss_dssp             SCEEEEES-TTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT------TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc------CCceeEEECCCCCHHHHHHHHHHHH
Confidence            45676665 567788888877632 347888888877666655555431      14678888887762  222111  1


Q ss_pred             ccCCceeEEecCccc
Q psy5757         105 MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~  119 (139)
                      ...+.+|++|.+...
T Consensus       117 ~~~~~id~li~~Ag~  131 (285)
T 2c07_A          117 TEHKNVDILVNNAGI  131 (285)
T ss_dssp             HHCSCCCEEEECCCC
T ss_pred             HhcCCCCEEEECCCC
Confidence            124568999988763

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=85.73  E-value=6  Score=28.41  Aligned_cols=45  Identities=16%  Similarity=0.313  Sum_probs=32.8

Q ss_pred             cCCCCCeEEEEcc--cCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGS--GSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++++||-.|+  |.|.....+++..+  ++|++++.+++..+.+++
T Consensus       137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~V~~~~~~~~~~~~~~~  183 (327)
T 1qor_A          137 EIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSALK  183 (327)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH
Confidence            3678899999984  34555666666554  389999999887777755

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=85.66  E-value=7.4  Score=27.31  Aligned_cols=81  Identities=7%  Similarity=0.028  Sum_probs=48.7

Q ss_pred             CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh--c
Q psy5757          31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM--M  105 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~--~  105 (139)
                      +.+|-.|+ +|..+..+++.+. ...+|+.++.+++.++...+.+..       ..++.++..|+.+.  +..+...  .
T Consensus        22 k~vlVTGa-s~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~~~~~   93 (272)
T 2nwq_A           22 STLFITGA-TSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSA-------KTRVLPLTLDVRDRAAMSAAVDNLPE   93 (272)
T ss_dssp             CEEEESST-TTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTT-------TSCEEEEECCTTCHHHHHHHHHTCCG
T ss_pred             cEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc-------CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            56666664 4555555555441 234899999998776665544422       13678888888762  2222111  1


Q ss_pred             cCCceeEEecCccc
Q psy5757         106 KFDRYDFLPHAPAE  119 (139)
Q Consensus       106 ~~~~~D~vi~~~~~  119 (139)
                      ..+.+|++|.|...
T Consensus        94 ~~g~iD~lvnnAG~  107 (272)
T 2nwq_A           94 EFATLRGLINNAGL  107 (272)
T ss_dssp             GGSSCCEEEECCCC
T ss_pred             HhCCCCEEEECCCC
Confidence            23568999998754

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=85.58  E-value=4.4  Score=28.52  Aligned_cols=84  Identities=18%  Similarity=0.098  Sum_probs=51.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-  104 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-  104 (139)
                      .++.+|--| |+|..+..+++.+ ....+|+.++.+++..+.+.+.+...      ..++.++..|+.+.  ...+... 
T Consensus        32 ~gk~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~~~~~~~~~  104 (275)
T 4imr_A           32 RGRTALVTG-SSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIAS------GGTAQELAGDLSEAGAGTDLIERA  104 (275)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHT------TCCEEEEECCTTSTTHHHHHHHHH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEEecCCCHHHHHHHHHHH
Confidence            456677655 5566666666655 22348999999887777666665441      15688888887752  1221110 


Q ss_pred             ccCCceeEEecCccc
Q psy5757         105 MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~  119 (139)
                      ...+.+|+++.|...
T Consensus       105 ~~~g~iD~lvnnAg~  119 (275)
T 4imr_A          105 EAIAPVDILVINASA  119 (275)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCCCEEEECCCC
Confidence            011578999988864

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=85.57  E-value=6.9  Score=26.93  Aligned_cols=82  Identities=12%  Similarity=0.079  Sum_probs=49.8

Q ss_pred             CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--hc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--MM  105 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~  105 (139)
                      +.+|-.| |+|..+..+++.+. ...+|+.++.+++..+...+.+...      ..++.++..|+.+.  +..+..  ..
T Consensus         3 k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~   75 (256)
T 1geg_A            3 KVALVTG-AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA------GGHAVAVKVDVSDRDQVFAAVEQARK   75 (256)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4566655 45666666666552 2348999999987766665555431      14677888888762  222111  11


Q ss_pred             cCCceeEEecCccc
Q psy5757         106 KFDRYDFLPHAPAE  119 (139)
Q Consensus       106 ~~~~~D~vi~~~~~  119 (139)
                      ..+.+|++|.|...
T Consensus        76 ~~g~id~lv~nAg~   89 (256)
T 1geg_A           76 TLGGFDVIVNNAGV   89 (256)
T ss_dssp             HTTCCCEEEECCCC
T ss_pred             HhCCCCEEEECCCC
Confidence            24579999998753

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=85.57  E-value=8.2  Score=27.77  Aligned_cols=45  Identities=16%  Similarity=0.205  Sum_probs=33.3

Q ss_pred             cCCCCCeEEEEcc--cCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGS--GSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .+++++++|-.|+  |.|.....+++..+  ++|++++.+++.++.+++
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--~~Vi~~~~~~~~~~~~~~  188 (333)
T 1wly_A          142 KVKPGDYVLIHAAAGGMGHIMVPWARHLG--ATVIGTVSTEEKAETARK  188 (333)
T ss_dssp             CCCTTCEEEETTTTSTTHHHHHHHHHHTT--CEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            3678899999985  45556666666654  489999999877777654

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=85.56  E-value=5.2  Score=28.03  Aligned_cols=86  Identities=15%  Similarity=0.199  Sum_probs=51.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|-.| |+|..+..+++.+- ...+|+.++.+++.++.+.+.+.. +.    ...++.++..|+.+.  +..+.. 
T Consensus         5 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~   79 (280)
T 1xkq_A            5 SNKTVIITG-SSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV----SEKQVNSVVADVTTEDGQDQIINS   79 (280)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC----CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcceEEEEecCCCHHHHHHHHHH
Confidence            345666655 56666666666552 234899999998777666555543 10    002688888998762  121111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|++|.|...
T Consensus        80 ~~~~~g~iD~lv~nAg~   96 (280)
T 1xkq_A           80 TLKQFGKIDVLVNNAGA   96 (280)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHhcCCCCEEEECCCC
Confidence             1123568999998753

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=85.55  E-value=4.2  Score=28.00  Aligned_cols=81  Identities=11%  Similarity=0.097  Sum_probs=49.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|++ |..+..+++.+ ....+|+.++.+++.++.+.+.+         ..++.++..|+.+.  +..+..  
T Consensus         5 ~gk~vlVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~   74 (247)
T 3rwb_A            5 AGKTALVTGAA-QGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---------GKKARAIAADISDPGSVKALFAEI   74 (247)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---------CTTEEECCCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCceEEEEcCCCCHHHHHHHHHHH
Confidence            45677777654 55555555544 22348999999987766655443         14677888887751  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        75 ~~~~g~id~lv~nAg~   90 (247)
T 3rwb_A           75 QALTGGIDILVNNASI   90 (247)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHHCCCCCEEEECCCC
Confidence            1123578999988864

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=85.47  E-value=7.1  Score=26.92  Aligned_cols=79  Identities=11%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             CeEEEEcccCChhHHHHHHHcC---CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          31 SKVLEIGSGSGYLTNMISELMN---STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~---~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +.+|-.| |+|..+..+++.+-   ....|+..+.+++.++...+.+.         .++.++..|+.+.  +..+..  
T Consensus         3 k~~lVTG-as~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~   72 (254)
T 3kzv_A            3 KVILVTG-VSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG---------DRFFYVVGDITEDSVLKQLVNAA   72 (254)
T ss_dssp             CEEEECS-TTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHG---------GGEEEEESCTTSHHHHHHHHHHH
T ss_pred             CEEEEEC-CCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhC---------CceEEEECCCCCHHHHHHHHHHH
Confidence            4556555 45566666665541   23488889999877766555431         4678888888762  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+++|+++.|...
T Consensus        73 ~~~~g~id~lvnnAg~   88 (254)
T 3kzv_A           73 VKGHGKIDSLVANAGV   88 (254)
T ss_dssp             HHHHSCCCEEEEECCC
T ss_pred             HHhcCCccEEEECCcc
Confidence            1124578999988764

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=85.46  E-value=6.7  Score=26.61  Aligned_cols=79  Identities=15%  Similarity=0.173  Sum_probs=46.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhh-cc
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELM-MK  106 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~  106 (139)
                      +++++|-.| |+|..+..+++.+. ...+|+.++.++..++...+..          .+++++..|+.+ .+.+..- ..
T Consensus         6 ~~k~vlITG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~D~~~-~~~~~~~~~~   73 (244)
T 3d3w_A            6 AGRRVLVTG-AGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC----------PGIEPVCVDLGD-WEATERALGS   73 (244)
T ss_dssp             TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTC-HHHHHHHHTT
T ss_pred             CCcEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----------CCCCEEEEeCCC-HHHHHHHHHH
Confidence            456777665 45666666666552 2348999998876554433221          345566788776 2222111 12


Q ss_pred             CCceeEEecCccc
Q psy5757         107 FDRYDFLPHAPAE  119 (139)
Q Consensus       107 ~~~~D~vi~~~~~  119 (139)
                      .+.+|++|.+...
T Consensus        74 ~~~id~vi~~Ag~   86 (244)
T 3d3w_A           74 VGPVDLLVNNAAV   86 (244)
T ss_dssp             CCCCCEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            4568999988763

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=85.41  E-value=7.3  Score=27.16  Aligned_cols=84  Identities=13%  Similarity=0.091  Sum_probs=48.8

Q ss_pred             CCCeEEEEccc-CChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSG-SGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G-~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|-.|++ +|..+..+++.+. ...+|+.++.++. .+...+.+....      .++.++..|+.+.  +..+.. 
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~------~~~~~~~~D~~~~~~v~~~~~~   77 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQEL------NSPYVYELDVSKEEHFKSLYNS   77 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHT------TCCCEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhc------CCcEEEEcCCCCHHHHHHHHHH
Confidence            45678888875 3777777777662 2458999998865 222222222211      2366777887751  222111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|++|.|...
T Consensus        78 ~~~~~g~id~lv~nAg~   94 (275)
T 2pd4_A           78 VKKDLGSLDFIVHSVAF   94 (275)
T ss_dssp             HHHHTSCEEEEEECCCC
T ss_pred             HHHHcCCCCEEEECCcc
Confidence             1124579999998864

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=85.37  E-value=1.9  Score=32.71  Aligned_cols=46  Identities=17%  Similarity=0.075  Sum_probs=35.9

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCce----EEEEeCCHHHHHHHHHHHHh
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQ----VIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~----v~~~d~~~~~~~~a~~~~~~   76 (139)
                      .+++|+.||.|+.+..+-+...+--.    |.++|+++.+++.-+.+...
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            48999999999999999876521013    88999999988877777643

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=85.33  E-value=6.3  Score=27.72  Aligned_cols=85  Identities=13%  Similarity=0.131  Sum_probs=49.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCH-HHHHHHHHHHHhhccccccCCcEEEEEccchh----h--hHH
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVP-QLVNSSIQNILHSNARLLTDGHIKFVALGMIK----R--IET  100 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~-~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~----~--~~~  100 (139)
                      .++.+|-.| |+|..+..+++.+- ...+|+.++.++ +..+.+.+.+....     ..++.++..|+.+    .  +..
T Consensus        22 ~~k~~lVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~~~~~~~~~v~~   95 (288)
T 2x9g_A           22 EAPAAVVTG-AAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER-----SNTAVVCQADLTNSNVLPASCEE   95 (288)
T ss_dssp             CCCEEEETT-CSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHS-----TTCEEEEECCCSCSTTHHHHHHH
T ss_pred             CCCEEEEeC-CCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhc-----CCceEEEEeecCCccCCHHHHHH
Confidence            456666655 45666666665541 124899999887 66665555543100     1467888888765    1  222


Q ss_pred             Hhh--hccCCceeEEecCccc
Q psy5757         101 VEL--MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       101 ~~~--~~~~~~~D~vi~~~~~  119 (139)
                      +..  ....+.+|++|.|...
T Consensus        96 ~~~~~~~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A           96 IINSCFRAFGRCDVLVNNASA  116 (288)
T ss_dssp             HHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHhcCCCCEEEECCCC
Confidence            111  1123578999998764

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=85.24  E-value=5.8  Score=27.88  Aligned_cols=84  Identities=17%  Similarity=0.150  Sum_probs=47.9

Q ss_pred             CCCeEEEEcccC-ChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGS-GYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~-G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|-.|+++ |..+..+++.+. ...+|+.++.++...+.++ .+...      ..++.++..|+.+.  +..+.. 
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~l~~~------~~~~~~~~~Dl~~~~~v~~~~~~   92 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVR-EIAKG------FGSDLVVKCDVSLDEDIKNLKKF   92 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HHHHH------TTCCCEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HHHHh------cCCeEEEEcCCCCHHHHHHHHHH
Confidence            456788877752 667777766552 2348999998875222222 22221      12356777887751  222111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|++|.|...
T Consensus        93 ~~~~~g~iD~lv~~Ag~  109 (285)
T 2p91_A           93 LEENWGSLDIIVHSIAY  109 (285)
T ss_dssp             HHHHTSCCCEEEECCCC
T ss_pred             HHHHcCCCCEEEECCCC
Confidence             1124578999998764

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=85.18  E-value=8.9  Score=27.82  Aligned_cols=90  Identities=7%  Similarity=0.036  Sum_probs=58.1

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhH-HHhhh-cc
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIE-TVELM-MK  106 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~-~~~~~-~~  106 (139)
                      ...||++|||.=.....+.  .+...+++-+| .|..+...++.+.. +.   ....+.+++..|+.+.+. .+... ..
T Consensus       103 ~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD-~P~vi~~k~~lL~~~~~---~~~~~~~~v~~Dl~d~~~~~l~~~g~d  176 (310)
T 2uyo_A          103 IRQFVILASGLDSRAYRLD--WPTGTTVYEID-QPKVLAYKSTTLAEHGV---TPTADRREVPIDLRQDWPPALRSAGFD  176 (310)
T ss_dssp             CCEEEEETCTTCCHHHHSC--CCTTCEEEEEE-CHHHHHHHHHHHHHTTC---CCSSEEEEEECCTTSCHHHHHHHTTCC
T ss_pred             CCeEEEeCCCCCchhhhcc--CCCCcEEEEcC-CHHHHHHHHHHHHhcCC---CCCCCeEEEecchHhhHHHHHHhccCC
Confidence            3579999999877644443  12235888888 58889988888864 21   124678899999886443 22111 12


Q ss_pred             CCceeEEecCccccccccc
Q psy5757         107 FDRYDFLPHAPAESWMNIP  125 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p  125 (139)
                      .+.--++++-.++|++...
T Consensus       177 ~~~Pt~~i~Egvl~Yl~~~  195 (310)
T 2uyo_A          177 PSARTAWLAEGLLMYLPAT  195 (310)
T ss_dssp             TTSCEEEEECSCGGGSCHH
T ss_pred             CCCCEEEEEechHhhCCHH
Confidence            2345677777778887753

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=84.92  E-value=4.3  Score=28.28  Aligned_cols=84  Identities=13%  Similarity=0.008  Sum_probs=47.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|+ +|..+..+++.+. ...+|+.++.++...+...+.+...      ..++.++..|+.+.  +.++..  
T Consensus        33 ~~k~vlITGa-sggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~  105 (279)
T 3ctm_A           33 KGKVASVTGS-SGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY------GVHSKAYKCNISDPKSVEETISQQ  105 (279)
T ss_dssp             TTCEEEETTT-TSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHH------CSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcceEEEeecCCHHHHHHHHHHH
Confidence            4567776664 5555555555441 1238999887765554444443331      14678888887751  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.+...
T Consensus       106 ~~~~g~id~li~~Ag~  121 (279)
T 3ctm_A          106 EKDFGTIDVFVANAGV  121 (279)
T ss_dssp             HHHHSCCSEEEECGGG
T ss_pred             HHHhCCCCEEEECCcc
Confidence            1123468999988764

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=84.87  E-value=6.5  Score=27.59  Aligned_cols=81  Identities=11%  Similarity=0.080  Sum_probs=49.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.| |+|..+..+++.+ ....+|+.++.+++.++.+.+.+.         .++.++..|+.+.  +..+..  
T Consensus        27 ~~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~d~~~v~~~~~~~   96 (272)
T 4dyv_A           27 GKKIAIVTG-AGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG---------DDALCVPTDVTDPDSVRALFTAT   96 (272)
T ss_dssp             -CCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT---------SCCEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------CCeEEEEecCCCHHHHHHHHHHH
Confidence            345566554 5566666666655 223489999999877666554431         4677888888762  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.|...
T Consensus        97 ~~~~g~iD~lVnnAg~  112 (272)
T 4dyv_A           97 VEKFGRVDVLFNNAGT  112 (272)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1123579999998764

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=84.79  E-value=6.2  Score=26.84  Aligned_cols=82  Identities=11%  Similarity=0.103  Sum_probs=49.7

Q ss_pred             CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHH-HhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNI-LHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~-~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      ++.+|-.| |+|..+..+++.+. ...+|+.++.++..++...+.+ ...      ..++.++..|+.+.  +.++..  
T Consensus         2 ~k~vlItG-asggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~   74 (250)
T 2cfc_A            2 SRVAIVTG-ASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAY------ADKVLRVRADVADEGDVNAAIAAT   74 (250)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTT------GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHHH
Confidence            35566666 55777777766552 2348999999987766655544 221      14688888888761  222111  


Q ss_pred             hccCCceeEEecCcc
Q psy5757         104 MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~  118 (139)
                      ....+.+|+++.+..
T Consensus        75 ~~~~~~id~li~~Ag   89 (250)
T 2cfc_A           75 MEQFGAIDVLVNNAG   89 (250)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCCEEEECCC
Confidence            112346899998875

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=84.72  E-value=7.6  Score=28.05  Aligned_cols=46  Identities=13%  Similarity=0.110  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEcccCC-hhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          27 LNENSKVLEIGSGSG-YLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G-~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      .+++.+||-+|+|.. .....+++... .++|+++|.+++.++.+++.
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~~~  207 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAKKI  207 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhhhc
Confidence            678999999998854 45555555442 35999999999877766553

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=84.72  E-value=4.2  Score=28.46  Aligned_cols=82  Identities=13%  Similarity=0.165  Sum_probs=49.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|--|+ +|..+..+++.+- ...+|+.++.+++.++.+.+.+.         .++.++..|+.+.  +.++..  
T Consensus        10 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~   79 (271)
T 3tzq_B           10 ENKVAIITGA-CGGIGLETSRVLARAGARVVLADLPETDLAGAAASVG---------RGAVHHVVDLTNEVSVRALIDFT   79 (271)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHC---------TTCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC---------CCeEEEECCCCCHHHHHHHHHHH
Confidence            4567776665 4555656555541 23489999988776665554431         4567788887752  222111  


Q ss_pred             hccCCceeEEecCcccc
Q psy5757         104 MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~~  120 (139)
                      ....+.+|+++.|....
T Consensus        80 ~~~~g~id~lv~nAg~~   96 (271)
T 3tzq_B           80 IDTFGRLDIVDNNAAHS   96 (271)
T ss_dssp             HHHHSCCCEEEECCCCC
T ss_pred             HHHcCCCCEEEECCCCC
Confidence            11235789999987643

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=84.69  E-value=2.2  Score=28.28  Aligned_cols=44  Identities=16%  Similarity=0.224  Sum_probs=32.7

Q ss_pred             HHHHHhcccC-CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeC
Q psy5757          18 TYLSIIQPHL-NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEH   62 (139)
Q Consensus        18 ~~~~~l~~~~-~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~   62 (139)
                      .++++..... .-...|||+|-|+|.+---+.+.+ |...++.+|-
T Consensus        28 ~~L~~a~~~v~~~~GpVlElGLGNGRTydHLRe~~-P~R~I~vfDR   72 (174)
T 3iht_A           28 ACLEHAIAQTAGLSGPVYELGLGNGRTYHHLRQHV-QGREIYVFER   72 (174)
T ss_dssp             HHHHHHHHHTTTCCSCEEEECCTTCHHHHHHHHHC-CSSCEEEEES
T ss_pred             HHHHHHHHHhcCCCCceEEecCCCChhHHHHHHhC-CCCcEEEEEe
Confidence            3444443323 234579999999999999999999 4669999993

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=84.59  E-value=4.7  Score=29.62  Aligned_cols=46  Identities=15%  Similarity=0.290  Sum_probs=34.7

Q ss_pred             cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH
Confidence            367889999999763 5667777776642 279999999888877754

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=84.50  E-value=2.7  Score=29.06  Aligned_cols=82  Identities=10%  Similarity=0.218  Sum_probs=43.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|--|++ |..+..+++.+ ....+|+.++.+++..+.+.+.+         ..++.++..|+.+.  +..+..  
T Consensus         6 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~   75 (257)
T 3tpc_A            6 KSRVFIVTGAS-SGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL---------GAAVRFRNADVTNEADATAALAFA   75 (257)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESSCC---------------------CEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---------CCceEEEEccCCCHHHHHHHHHHH
Confidence            45677776654 55556665554 12348999998876655444332         14577888887762  222111  


Q ss_pred             hccCCceeEEecCcccc
Q psy5757         104 MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~~  120 (139)
                      ....+.+|+++.|....
T Consensus        76 ~~~~g~id~lv~nAg~~   92 (257)
T 3tpc_A           76 KQEFGHVHGLVNCAGTA   92 (257)
T ss_dssp             HHHHSCCCEEEECCCCC
T ss_pred             HHHcCCCCEEEECCCCC
Confidence            11245799999987643

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=84.50  E-value=7  Score=26.98  Aligned_cols=85  Identities=9%  Similarity=0.008  Sum_probs=50.4

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|+ +|..+..+++.+- ...+|+.++.+++..+.+.+.+....    ...++.++..|+.+.  +..+..  
T Consensus         6 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~   80 (260)
T 2z1n_A            6 QGKLAVVTAG-SSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLV----SGAQVDIVAGDIREPGDIDRLFEKA   80 (260)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS----TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCeEEEEEccCCCHHHHHHHHHHH
Confidence            4567776664 5666666666552 23489999999877766555543310    012688888888752  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+ +|+++.|...
T Consensus        81 ~~~~g-id~lv~~Ag~   95 (260)
T 2z1n_A           81 RDLGG-ADILVYSTGG   95 (260)
T ss_dssp             HHTTC-CSEEEECCCC
T ss_pred             HHhcC-CCEEEECCCC
Confidence            11234 8999988763

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=84.46  E-value=7.6  Score=27.01  Aligned_cols=84  Identities=8%  Similarity=0.014  Sum_probs=49.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeC-CHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEH-VPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~-~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++++|-.|+ +|..+..+++.+- ...+|+.++. ++...+...+.+...      ..++.++..|+.+.  +.++.. 
T Consensus        28 ~~k~vlITGa-s~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~  100 (271)
T 4iin_A           28 TGKNVLITGA-SKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEK------GYKAAVIKFDAASESDFIEAIQT  100 (271)
T ss_dssp             SCCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc------CCceEEEECCCCCHHHHHHHHHH
Confidence            4567776654 5556666666552 2348888887 555555555555441      14788888888762  121111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|++|.|...
T Consensus       101 ~~~~~g~id~li~nAg~  117 (271)
T 4iin_A          101 IVQSDGGLSYLVNNAGV  117 (271)
T ss_dssp             HHHHHSSCCEEEECCCC
T ss_pred             HHHhcCCCCEEEECCCc
Confidence             1123579999998764

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=84.39  E-value=8  Score=26.62  Aligned_cols=78  Identities=15%  Similarity=0.157  Sum_probs=46.0

Q ss_pred             eEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh--cc
Q psy5757          32 KVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM--MK  106 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~--~~  106 (139)
                      .+|-.| |+|..+..+++.+. ...+|+.++.+++.++.+.+.+.         .++.++..|+.+.  +..+...  ..
T Consensus         2 ~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~~   71 (248)
T 3asu_A            2 IVLVTG-ATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG---------DNLYIAQLDVRNRAAIEEMLASLPAE   71 (248)
T ss_dssp             EEEETT-TTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------TTEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred             EEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---------CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            344444 45666666665541 23489999999876655444331         4677888888761  2222111  12


Q ss_pred             CCceeEEecCccc
Q psy5757         107 FDRYDFLPHAPAE  119 (139)
Q Consensus       107 ~~~~D~vi~~~~~  119 (139)
                      .+.+|+++.|...
T Consensus        72 ~g~iD~lvnnAg~   84 (248)
T 3asu_A           72 WCNIDILVNNAGL   84 (248)
T ss_dssp             TCCCCEEEECCCC
T ss_pred             CCCCCEEEECCCc
Confidence            3579999998764

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=84.26  E-value=8.1  Score=28.17  Aligned_cols=44  Identities=9%  Similarity=0.086  Sum_probs=32.0

Q ss_pred             cCCCCCeEEEEcc--cCChhHHHHHHHcCCCceEEEEeCCHHHHHHHH
Q psy5757          26 HLNENSKVLEIGS--GSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI   71 (139)
Q Consensus        26 ~~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~   71 (139)
                      .++++++||-.|+  |.|.....+++..+  ++|++++.+++.++.++
T Consensus       159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~  204 (354)
T 2j8z_A          159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAG--AIPLVTAGSQKKLQMAE  204 (354)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH
Confidence            3678899999884  34555566666554  48999999988877774

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=84.13  E-value=7.3  Score=26.98  Aligned_cols=81  Identities=10%  Similarity=0.062  Sum_probs=47.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|+ +|..+..+++.+. ...+|+.++.+++..+...+.+.         .++.++..|+.+.  +..+..  
T Consensus         6 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~   75 (260)
T 1nff_A            6 TGKVALVSGG-ARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA---------DAARYVHLDVTQPAQWKAAVDTA   75 (260)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh---------cCceEEEecCCCHHHHHHHHHHH
Confidence            4567776664 5666666666541 23489999998766655443331         2477788887751  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        76 ~~~~g~iD~lv~~Ag~   91 (260)
T 1nff_A           76 VTAFGGLHVLVNNAGI   91 (260)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1123468999988763

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=84.10  E-value=7  Score=26.95  Aligned_cols=84  Identities=13%  Similarity=0.056  Sum_probs=50.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.| |+|..+..+++.+. ...+|+.++.+++.++...+.+...      ..++.++..|+.+.  +..+..  
T Consensus        13 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~   85 (260)
T 2zat_A           13 ENKVALVTA-STDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE------GLSVTGTVCHVGKAEDRERLVAMA   85 (260)
T ss_dssp             TTCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHHHH
Confidence            456676655 56666777766552 2348999999987766655555431      13677788887651  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        86 ~~~~g~iD~lv~~Ag~  101 (260)
T 2zat_A           86 VNLHGGVDILVSNAAV  101 (260)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1123478999988753

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=84.09  E-value=5  Score=28.86  Aligned_cols=84  Identities=12%  Similarity=0.097  Sum_probs=49.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCC----------HHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHV----------PQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~----------~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      .++.+|-.| |+|..+..+++.+ ....+|+.++.+          ....+...+.+...      ..++.++..|+.+.
T Consensus        26 ~gk~vlVTG-as~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~   98 (322)
T 3qlj_A           26 DGRVVIVTG-AGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA------GGEAVADGSNVADW   98 (322)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHT------TCEEEEECCCTTSH
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhc------CCcEEEEECCCCCH
Confidence            456676665 4566666666655 223489998876          45555555555441      14677888888762


Q ss_pred             --hHHHhh--hccCCceeEEecCccc
Q psy5757          98 --IETVEL--MMKFDRYDFLPHAPAE  119 (139)
Q Consensus        98 --~~~~~~--~~~~~~~D~vi~~~~~  119 (139)
                        +..+..  ...++.+|++|.|...
T Consensus        99 ~~v~~~~~~~~~~~g~iD~lv~nAg~  124 (322)
T 3qlj_A           99 DQAAGLIQTAVETFGGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEECCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence              111111  1123578999998864

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=84.08  E-value=6.8  Score=27.14  Aligned_cols=85  Identities=11%  Similarity=0.124  Sum_probs=50.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.| |+|..+..+++.+- ...+|+.++.+++..+.+.+.+...    ....++.++..|+.+.  +..+..  
T Consensus         6 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~~D~~~~~~v~~~~~~~   80 (267)
T 2gdz_A            6 NGKVALVTG-AAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ----FEPQKTLFIQCDVADQQQLRDTFRKV   80 (267)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT----SCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh----cCCCceEEEecCCCCHHHHHHHHHHH
Confidence            356777766 45666666666552 2348999999987666554444320    0014678888888762  222111  


Q ss_pred             hccCCceeEEecCcc
Q psy5757         104 MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~  118 (139)
                      ....+.+|+++.|..
T Consensus        81 ~~~~g~id~lv~~Ag   95 (267)
T 2gdz_A           81 VDHFGRLDILVNNAG   95 (267)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence            112356899998875

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=84.04  E-value=6.5  Score=27.95  Aligned_cols=86  Identities=16%  Similarity=0.192  Sum_probs=52.0

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|-.| |+|..+..+++.+. ...+|+.++.+++.++.+.+.+.. +.    ...++.++..|+.+.  +..+.. 
T Consensus        25 ~~k~vlVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~~Dv~d~~~v~~~~~~   99 (297)
T 1xhl_A           25 SGKSVIITG-SSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV----PAEKINAVVADVTEASGQDDIINT   99 (297)
T ss_dssp             TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC----CCceEEEEecCCCCHHHHHHHHHH
Confidence            456666555 56667777766552 234899999998777666555543 10    001688888898762  122111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|++|.|...
T Consensus       100 ~~~~~g~iD~lvnnAG~  116 (297)
T 1xhl_A          100 TLAKFGKIDILVNNAGA  116 (297)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHhcCCCCEEEECCCc
Confidence             1123578999998753

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=83.96  E-value=6.6  Score=26.61  Aligned_cols=82  Identities=6%  Similarity=0.036  Sum_probs=50.1

Q ss_pred             CeEEEEcccCChhHHHHHHHcCC-Cc-------eEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHH
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNS-TG-------QVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IET  100 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~-~~-------~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~  100 (139)
                      +.+|-.| |+|..+..+++.+-. ..       +|+.++.++..++...+.+...      ..++.++..|+.+.  +..
T Consensus         3 k~vlITG-asggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~   75 (244)
T 2bd0_A            3 HILLITG-AGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE------GALTDTITADISDMADVRR   75 (244)
T ss_dssp             EEEEEET-TTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT------TCEEEEEECCTTSHHHHHH
T ss_pred             CEEEEEC-CCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc------CCeeeEEEecCCCHHHHHH
Confidence            4566555 567777777766522 22       6899999987776665555431      14688888898762  222


Q ss_pred             Hhh--hccCCceeEEecCccc
Q psy5757         101 VEL--MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       101 ~~~--~~~~~~~D~vi~~~~~  119 (139)
                      +..  ....+.+|++|.+...
T Consensus        76 ~~~~~~~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           76 LTTHIVERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHHHHHHHTSCCSEEEECCCC
T ss_pred             HHHHHHHhCCCCCEEEEcCCc
Confidence            111  1123568999988753

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=83.73  E-value=6.9  Score=27.32  Aligned_cols=80  Identities=14%  Similarity=0.142  Sum_probs=47.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      .++.+|-.|+ +|..+..+++.+- ...+|+.++.+++..+...+.+          .++.++..|+.+.  +..+..  
T Consensus         8 ~~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~Dv~d~~~v~~~~~~~   76 (270)
T 1yde_A            8 AGKVVVVTGG-GRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL----------PGAVFILCDVTQEDDVKTLVSET   76 (270)
T ss_dssp             TTCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------TTEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------cCCeEEEcCCCCHHHHHHHHHHH
Confidence            4567776664 5666666666552 2348999999976655443321          3477788887751  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|++|.|...
T Consensus        77 ~~~~g~iD~lv~nAg~   92 (270)
T 1yde_A           77 IRRFGRLDCVVNNAGH   92 (270)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1123578999988754

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=83.72  E-value=7  Score=26.71  Aligned_cols=83  Identities=14%  Similarity=0.091  Sum_probs=49.7

Q ss_pred             CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeC-CHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEH-VPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~-~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      ++.+|-.| |+|..+..+++.+. ...+|+.++. +++..+.+.+.+...      ..++.++..|+.+.  +..+..  
T Consensus         4 ~k~vlVTG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~   76 (246)
T 2uvd_A            4 GKVALVTG-ASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL------GSDAIAVRADVANAEDVTNMVKQT   76 (246)
T ss_dssp             TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            45666554 56777777766552 2348888888 777666655555431      14677888887752  222111  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ....+.+|+++.|...
T Consensus        77 ~~~~g~id~lv~nAg~   92 (246)
T 2uvd_A           77 VDVFGQVDILVNNAGV   92 (246)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1123468999988763

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=83.70  E-value=3.9  Score=28.84  Aligned_cols=82  Identities=13%  Similarity=0.150  Sum_probs=46.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .+++.+|-=|++ +..+..+++.+ ...++|+..|.+..  +.+.+.+...      -.++..+..|+.+. .....-..
T Consensus         7 L~GKvalVTGas-~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~------g~~~~~~~~Dv~d~-~~v~~~~~   76 (247)
T 4hp8_A            7 LEGRKALVTGAN-TGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKD------GGNASALLIDFADP-LAAKDSFT   76 (247)
T ss_dssp             CTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHT------TCCEEEEECCTTST-TTTTTSST
T ss_pred             CCCCEEEEeCcC-CHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHh------CCcEEEEEccCCCH-HHHHHHHH
Confidence            356666665544 45555555544 22348988888743  2233333331      14678888887762 22222223


Q ss_pred             CCceeEEecCccc
Q psy5757         107 FDRYDFLPHAPAE  119 (139)
Q Consensus       107 ~~~~D~vi~~~~~  119 (139)
                      +.++|+++.|.-.
T Consensus        77 ~g~iDiLVNNAGi   89 (247)
T 4hp8_A           77 DAGFDILVNNAGI   89 (247)
T ss_dssp             TTCCCEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence            4679999988754

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=83.45  E-value=2.3  Score=30.98  Aligned_cols=45  Identities=16%  Similarity=0.226  Sum_probs=34.3

Q ss_pred             CCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          27 LNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        27 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      + ++.+||-+|+|. |..+..+++...+.++|++++.+++..+.+++
T Consensus       169 ~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          169 F-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE  214 (344)
T ss_dssp             C-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred             C-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence            5 889999999863 56777777776112489999999888877765

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=83.38  E-value=5  Score=29.48  Aligned_cols=46  Identities=15%  Similarity=0.242  Sum_probs=34.3

Q ss_pred             cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++++||-+|+|. |..+..+++..+. .+|++++.+++.++.+++
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGA-KRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH
Confidence            367889999999753 5666777776642 279999999888887754

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=83.34  E-value=5.7  Score=27.67  Aligned_cols=86  Identities=14%  Similarity=0.182  Sum_probs=50.4

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .++.+|-.| |+|..+..+++.+. ...+|+.++.+++.++.+.+.+.. ..    ...++.++..|+.+.  +..+.. 
T Consensus         5 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~   79 (278)
T 1spx_A            5 AEKVAIITG-SSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV----SEQNVNSVVADVTTDAGQDEILST   79 (278)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccc----CCCceeEEecccCCHHHHHHHHHH
Confidence            345666555 45666766666552 234899999998777766555521 00    014678888888752  222111 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ....+.+|+++.|...
T Consensus        80 ~~~~~g~id~lv~~Ag~   96 (278)
T 1spx_A           80 TLGKFGKLDILVNNAGA   96 (278)
T ss_dssp             HHHHHSCCCEEEECCC-
T ss_pred             HHHHcCCCCEEEECCCC
Confidence             1123478999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	2e-07
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	2e-06
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	5e-05
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	1e-04
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	2e-04
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	3e-04
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	8e-04
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	0.001
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	0.002
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	0.002
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.002
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.003
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	0.003
d1zq9a1	278	c.66.1.24 (A:36-313) Probable dimethyladenosine tr	0.003
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	0.004

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 2e-07
 Identities = 28/100 (28%), Positives = 48/100 (48%)

Query: 22  IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARL 81
           ++   L+E +K L++GSGSG LT   + ++  TG+VIGI+H+ +LV+ S+ N+   +  L
Sbjct: 69  LLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTL 128

Query: 82  LTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW 121
           L+ G ++ V                       P  P    
Sbjct: 129 LSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALI 168

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 2e-06
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 22  IIQPH----------LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
           I  P           +N    VLE GSGSG ++  +S+ + S G+VI  E      + + 
Sbjct: 81  ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAK 140

Query: 72  QNI 74
           +N 
Sbjct: 141 KNY 143

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 39.5 bits (91), Expect = 5e-05
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEH 62
           + +   +++ G G GYL  ++  L+    +  GI+ 
Sbjct: 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDS 60

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 13  ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ 72
            S I+    +          +LE+G GSG +++ I   +N  G +  +E     +  ++ 
Sbjct: 74  ASYIIMRCGL-----RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMD 128

Query: 73  NI 74
           N+
Sbjct: 129 NL 130

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVN 68
          L  N +VL++ +G G++ N  +       +V+  +    ++ 
Sbjct: 13 LKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILK 51

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.0 bits (85), Expect = 3e-04
 Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 5  KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVP 64
          K+ A I     +          L  + +VL +G+ SG   + ++++++    +  +E+  
Sbjct: 41 KLAAMILKGHRL---------KLRGDERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSA 90

Query: 65 QLV 67
          +  
Sbjct: 91 KPF 93

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 35.9 bits (82), Expect = 8e-04
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 5   KIGAAI-GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHV 63
           K+ AAI  G+  +          +  +SK+L +G+ +G   + ++++ +    V  IE+ 
Sbjct: 58  KLAAAIIKGLKVM---------PIKRDSKILYLGASAGTTPSHVADIADKG-IVYAIEYA 107

Query: 64  PQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN 123
           P+     ++ +L + A       I   A    +    VE +         P+       N
Sbjct: 108 PR----IMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKN 163

Query: 124 I 124
            
Sbjct: 164 A 164

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 13  ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ 72
            + I+         +   ++VLE G+GSG LT  +   +   GQVI  E        + +
Sbjct: 85  AAQIVHEG-----DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARR 139

Query: 73  NI 74
           N+
Sbjct: 140 NV 141

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 14/134 (10%)

Query: 5   KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVP 64
           K+GAAI           +    +     VL +G  SG   + +S+++   G++ GIE  P
Sbjct: 57  KLGAAI--------MNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP 108

Query: 65  QLVNSSIQNILHSNARLLTDGHIKFVAL-----GMIKRIETVELMMKFDRYDFLPHAPAE 119
           +++   +  +      +   G              +  I    +         + +A   
Sbjct: 109 RVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED-VAQPTQAKILIDNAEVY 167

Query: 120 SWMNIPVCINYTAT 133
                   I   + 
Sbjct: 168 LKRGGYGMIAVKSR 181

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.002
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 18 TYLSIIQ--PHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLV 67
          +Y   I   PH+ ++  VL++G G+G L+   ++      +V+G++    L 
Sbjct: 22 SYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILY 71

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQ 65
               +VL+IG+G+G+     S       + IG++   +
Sbjct: 14 CRAEHRVLDIGAGAGHTALAFSPY---VQECIGVDATKE 49

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.003
 Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 26  HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDG 85
            + ++   +++GSG G +   ++    +     G+E        +          +   G
Sbjct: 148 KMTDDDLFVDLGSGVGQVVLQVA-AATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG 206

Query: 86  H 86
            
Sbjct: 207 K 207

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 8/118 (6%)

Query: 22  IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARL 81
           +I+ +      VL++G G G             G+  G++     +N +     +   R 
Sbjct: 17  LIRLYTKRGDSVLDLGCGKGGDLLKYER--AGIGEYYGVDIAEVSINDARVRARNMKRRF 74

Query: 82  LTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHA--PAESWMNIPVCINYTATMPEG 137
                + F A     R   +          F  H        ++I          P G
Sbjct: 75  ----KVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGG 128

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} Length = 278

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.003
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 13/94 (13%)

Query: 27  LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNAR------ 80
           L     VLE+G G+G +T    +L+    +V+  E  P+LV    + +  +         
Sbjct: 19  LRPTDVVLEVGPGTGNMTV---KLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVL 75

Query: 81  ----LLTDGHIKFVALGMIKRIETVELMMKFDRY 110
               L TD       +  +    +   + K   +
Sbjct: 76  VGDVLKTDLPFFDTCVANLPYQISSPFVFKLLLH 109

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.0 bits (77), Expect = 0.004
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 25 PHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQ 65
           HL ++  VL++GSG+G L    ++      +VIGIE    
Sbjct: 29 RHLFKDKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSI 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.81
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.81
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.8
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.8
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.75
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.74
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.73
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.73
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.72
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.71
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.71
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.7
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.69
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.66
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.66
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.65
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.65
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.64
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.63
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.63
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.63
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.62
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.62
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.61
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.61
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.6
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.6
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.59
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.56
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.55
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.55
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.55
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.55
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.55
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.55
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.54
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.52
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.52
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.51
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.5
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.5
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.49
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.49
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.48
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.46
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.45
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.44
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.43
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.42
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.42
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.41
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.4
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.4
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.38
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.37
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.37
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.37
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.34
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.33
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.33
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	99.33
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.32
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	99.31
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.3
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.3
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.29
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.27
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.26
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.25
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.21
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.17
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	99.12
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.12
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	99.11
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.05
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.04
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.91
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.9
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.74
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.67
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.64
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.61
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.6
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.59
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.56
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.56
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	98.53
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.53
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.46
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.45
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.44
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.41
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.41
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.38
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.29
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.29
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.27
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.21
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.09
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.04
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.9
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.89
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.78
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.69
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.17
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.69
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	96.45
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.43
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.4
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.39
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.12
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	96.07
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.05
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	95.83
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.64
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	95.63
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.46
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.38
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.37
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.26
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.2
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.14
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.08
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.97
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.9
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.83
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.73
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.7
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.65
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.61
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.58
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	94.54
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	94.5
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.46
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.36
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.35
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.3
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.25
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	94.13
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.1
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.09
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.08
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	93.96
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.91
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.88
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.88
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.7
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	93.7
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.69
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.67
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	93.57
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.42
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	93.38
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	93.32
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.28
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	93.25
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.25
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.15
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.96
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	92.94
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.89
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	92.82
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.47
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.44
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.38
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	92.27
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	92.03
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.01
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	91.99
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.54
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.52
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	91.51
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.43
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	91.42
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.41
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	91.4
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	91.06
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	91.04
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	90.85
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	90.62
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	90.56
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	90.45
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	90.42
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	89.77
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	89.53
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.11
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.13
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	87.34
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	87.28
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	86.65
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	86.64
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	86.16
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	83.27
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.39
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	81.88
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	81.2
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	80.78
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	80.29

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=1.9e-20  Score=131.48  Aligned_cols=106  Identities=14%  Similarity=0.194  Sum_probs=88.2

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+++...  ++++++|||+|||+|.++..+++...   +++|+|+|+.+++.|++++.. +.      +++.++++|+
T Consensus         5 ~~~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~------~~~~~~~~d~   73 (234)
T d1xxla_           5 LGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGV------ENVRFQQGTA   73 (234)
T ss_dssp             HHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTC------CSEEEEECBT
T ss_pred             HHHHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhccccc------cccccccccc
Confidence            445566664  79999999999999999999999874   899999999999999999887 54      7899999996


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      .+ +     +.+.++||+|++..++||+++|...   .++.++|+|.
T Consensus        74 ~~-~-----~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~  114 (234)
T d1xxla_          74 ES-L-----PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGR  114 (234)
T ss_dssp             TB-C-----CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             cc-c-----cccccccceeeeeceeecccCHHHHHHHHHHeeCCCcE
Confidence            54 2     2346789999999999999987543   3788888874

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.6e-20  Score=128.90  Aligned_cols=114  Identities=28%  Similarity=0.427  Sum_probs=95.9

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccccc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLT   83 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~   83 (139)
                      +.++++++|+++.++++.|...++++.+|||+|||+|+.+..+++..++.++|+++|+++++++.|++++++ +. ..+.
T Consensus        52 ~~~~~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~-~~~~  130 (224)
T d1i1na_          52 GFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP-TLLS  130 (224)
T ss_dssp             ETTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCT-HHHH
T ss_pred             cchhhhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCc-cccc
Confidence            568899999999999999976689999999999999999999999988888999999999999999999876 22 1123


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIP  125 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p  125 (139)
                      ..+++++++|+.+++.      +...||+|+++.+.+++++.
T Consensus       131 ~~~~~~~~gD~~~~~~------~~~~fD~I~~~~~~~~ip~~  166 (224)
T d1i1na_         131 SGRVQLVVGDGRMGYA------EEAPYDAIHVGAAAPVVPQA  166 (224)
T ss_dssp             TSSEEEEESCGGGCCG------GGCCEEEEEECSBBSSCCHH
T ss_pred             ccceEEEEeecccccc------hhhhhhhhhhhcchhhcCHH
Confidence            4688999999766443      24579999999998887653

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.80  E-value=2.7e-20  Score=129.93  Aligned_cols=106  Identities=15%  Similarity=0.314  Sum_probs=88.2

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ..++++.+.  ++++++|||||||+|.++..+++...   +++|+|+|+.+++.|++++.. +.      ++++++++|+
T Consensus         4 ~~~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~------~~i~~~~~d~   72 (231)
T d1vl5a_           4 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGH------QQVEYVQGDA   72 (231)
T ss_dssp             HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCC
T ss_pred             HHHHHHhcC--CCCcCEEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhccccccc------cccccccccc
Confidence            345666664  78999999999999999999998874   999999999999999999887 54      8999999996


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      .+    +  +.+.++||+|++..++||+.+|...   .++.++|+|.
T Consensus        73 ~~----l--~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~  113 (231)
T d1vl5a_          73 EQ----M--PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQ  113 (231)
T ss_dssp             -C----C--CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             cc----c--cccccccccccccccccccCCHHHHHHHHHHhcCCCcE
Confidence            54    2  2346789999999999999998543   4888888884

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=9.8e-20  Score=126.73  Aligned_cols=116  Identities=19%  Similarity=0.293  Sum_probs=97.6

Q ss_pred             hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccC
Q psy5757           6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTD   84 (139)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~   84 (139)
                      .+.++++|+++.++++.+.  ++++++|||+|||+|+.+..+++..++.++|+++|+++++++.|++++.. +.      
T Consensus        54 ~~~~i~~P~~~a~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~------  125 (213)
T d1dl5a1          54 EYSTSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------  125 (213)
T ss_dssp             CEEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------
T ss_pred             cceeeccchhhHHHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc------
Confidence            3467888999999999996  89999999999999999999999988888999999999999999999988 54      


Q ss_pred             CcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          85 GHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        85 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      .|+.++++|..+.+.      ..++||+|+++.+++++++..   ++.++|+|.
T Consensus       126 ~n~~~~~~d~~~~~~------~~~~fD~I~~~~~~~~~p~~l---~~~LkpGG~  170 (213)
T d1dl5a1         126 ENVIFVCGDGYYGVP------EFSPYDVIFVTVGVDEVPETW---FTQLKEGGR  170 (213)
T ss_dssp             CSEEEEESCGGGCCG------GGCCEEEEEECSBBSCCCHHH---HHHEEEEEE
T ss_pred             cccccccCchHHccc------cccchhhhhhhccHHHhHHHH---HHhcCCCcE
Confidence            899999999765333      235799999999999887542   455666664

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=3.2e-18  Score=120.71  Aligned_cols=110  Identities=13%  Similarity=0.112  Sum_probs=88.8

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEE
Q psy5757          13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVA   91 (139)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~   91 (139)
                      +.....+.+.+.  +.++++|||+|||+|..+..+++..+  ++++|+|+|+.+++.|+++... ++     .+++++++
T Consensus        19 ~~~~~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl-----~~~v~~~~   89 (245)
T d1nkva_          19 EEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGV-----SERVHFIH   89 (245)
T ss_dssp             HHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTC-----TTTEEEEE
T ss_pred             HHHHHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhc-----cccchhhh
Confidence            344555666664  78999999999999999999998764  4999999999999999999887 65     46799999


Q ss_pred             ccchhhhHHHhhhccCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757          92 LGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus        92 ~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      +|+.+.       ...++||+|++..+++|+.++...   ..+.++|+|.
T Consensus        90 ~d~~~~-------~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~  132 (245)
T d1nkva_          90 NDAAGY-------VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGI  132 (245)
T ss_dssp             SCCTTC-------CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEE
T ss_pred             hHHhhc-------cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcE
Confidence            996551       135689999999999999887533   3777888874

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.74  E-value=2.8e-18  Score=123.35  Aligned_cols=99  Identities=14%  Similarity=0.125  Sum_probs=83.4

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++.+|||+|||+|..+..++++.+.  +|+|+|+++.+++.|+++... ++     .++++++++|+.+    +  +.
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~i~~a~~~~~~~gl-----~~~v~~~~~d~~~----l--~~  131 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGV--SIDCLNIAPVQNKRNEEYNNQAGL-----ADNITVKYGSFLE----I--PC  131 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHHTC-----TTTEEEEECCTTS----C--SS
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCc--EEEEEeccchhhhhhhcccccccc-----ccccccccccccc----c--cc
Confidence            578899999999999999999998643  899999999999999999888 66     4689999999654    2  23


Q ss_pred             cCCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                      +.++||+|++..++||++++..   ..++.++|+|.
T Consensus       132 ~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~  167 (282)
T d2o57a1         132 EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGV  167 (282)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred             cccccchhhccchhhhccCHHHHHHHHHHhcCCCcE
Confidence            4678999999999999998753   33778888874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.73  E-value=6e-18  Score=118.33  Aligned_cols=103  Identities=22%  Similarity=0.279  Sum_probs=88.3

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccC
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTD   84 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~   84 (139)
                      ..|++++.|+...++++.+.  ++++++|||+|||+|+.+..+++...   +|+++|+++++++.|++++..       .
T Consensus        48 ~~g~~~~~p~~~a~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~~---~V~aiE~~~~~~~~A~~~~~~-------~  115 (224)
T d1vbfa_          48 LPGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSY-------Y  115 (224)
T ss_dssp             ETTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTT-------C
T ss_pred             CCCCceehhhhHHHHHHHhh--hcccceEEEecCCCCHHHHHHHHHhc---ccccccccHHHHHHHHHHHhc-------c
Confidence            35778999999999999986  89999999999999999999999875   999999999999999988765       4


Q ss_pred             CcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccc
Q psy5757          85 GHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIP  125 (139)
Q Consensus        85 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p  125 (139)
                      .|++++++|...+++      ...+||+|++..+.+++++.
T Consensus       116 ~nv~~~~~d~~~g~~------~~~pfD~Iiv~~a~~~ip~~  150 (224)
T d1vbfa_         116 NNIKLILGDGTLGYE------EEKPYDRVVVWATAPTLLCK  150 (224)
T ss_dssp             SSEEEEESCGGGCCG------GGCCEEEEEESSBBSSCCHH
T ss_pred             cccccccCchhhcch------hhhhHHHHHhhcchhhhhHH
Confidence            789999999776554      13569999999888877653

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=2.7e-18  Score=118.82  Aligned_cols=108  Identities=13%  Similarity=0.240  Sum_probs=84.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ..++...+.++++++.+|||+|||+|.++..+++...   +++|+|+|+.+++.|++++....      .++.++++|+.
T Consensus        24 ~~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~------~~~~~~~~d~~   94 (226)
T d1ve3a1          24 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE------SNVEFIVGDAR   94 (226)
T ss_dssp             HHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCTT
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhcccc------ccccccccccc
Confidence            3444555555678889999999999999999998754   99999999999999999887611      45778888865


Q ss_pred             hhhHHHhhhccCCceeEEecCccccccc--cc---eeeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMN--IP---VCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~--~p---~~~~~~~~~p~g~  138 (139)
                      + +     +.+.++||+|++..++||+.  ++   .....++++|+|.
T Consensus        95 ~-l-----~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~  136 (226)
T d1ve3a1          95 K-L-----SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGK  136 (226)
T ss_dssp             S-C-----CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEE
T ss_pred             c-c-----cccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcE
Confidence            5 2     23467899999999999986  33   3344788888874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.72  E-value=8.9e-18  Score=116.78  Aligned_cols=106  Identities=23%  Similarity=0.375  Sum_probs=92.4

Q ss_pred             hhhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757           4 VKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL   82 (139)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~   82 (139)
                      ++.|+++++|+++.++++.+.  ++++.+|||+|||+|+.+..+++..+  ++|+++|.++++++.|+++++. +.    
T Consensus        55 i~~g~~is~P~~~a~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~----  126 (215)
T d1jg1a_          55 IPAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGV----  126 (215)
T ss_dssp             CSTTCEECCHHHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTC----
T ss_pred             cchhhhhhhhhhHHHHHHhhc--cCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCC----
Confidence            356889999999999999996  89999999999999999999998865  3899999999999999999998 54    


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccc
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIP  125 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p  125 (139)
                        .|+.++++|..++++      ....||.|++..+...+++.
T Consensus       127 --~nv~~~~gd~~~g~~------~~~pfD~Iiv~~a~~~ip~~  161 (215)
T d1jg1a_         127 --KNVHVILGDGSKGFP------PKAPYDVIIVTAGAPKIPEP  161 (215)
T ss_dssp             --CSEEEEESCGGGCCG------GGCCEEEEEECSBBSSCCHH
T ss_pred             --ceeEEEECccccCCc------ccCcceeEEeecccccCCHH
Confidence              899999999877654      24679999999988776643

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.71  E-value=1.5e-17  Score=113.14  Aligned_cols=110  Identities=13%  Similarity=0.196  Sum_probs=86.9

Q ss_pred             ChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEE
Q psy5757          12 GISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFV   90 (139)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~   90 (139)
                      ..++...++..+.  +.++.+|||+|||+|.++..+++...   +|+++|+++.+++.|+++++. ++     .++++++
T Consensus        18 ~~eir~~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl-----~~~v~~~   87 (186)
T d1l3ia_          18 AMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGL-----GDNVTLM   87 (186)
T ss_dssp             CHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTC-----CTTEEEE
T ss_pred             hHHHHHHHHHhcC--CCCCCEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCC-----CcceEEE
Confidence            4445567777775  68999999999999999999998764   999999999999999999988 65     4699999


Q ss_pred             EccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCC
Q psy5757          91 ALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEG  137 (139)
Q Consensus        91 ~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g  137 (139)
                      ++|+.+.+.      +...||+|+++...+...+........++|+|
T Consensus        88 ~gda~~~~~------~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG  128 (186)
T d1l3ia_          88 EGDAPEALC------KIPDIDIAVVGGSGGELQEILRIIKDKLKPGG  128 (186)
T ss_dssp             ESCHHHHHT------TSCCEEEEEESCCTTCHHHHHHHHHHTEEEEE
T ss_pred             ECchhhccc------ccCCcCEEEEeCccccchHHHHHHHHHhCcCC
Confidence            999655221      34679999999987766665555555566665

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=4.6e-18  Score=118.91  Aligned_cols=114  Identities=25%  Similarity=0.354  Sum_probs=91.1

Q ss_pred             hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCC-----CceEEEEeCCHHHHHHHHHHHHhhcc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNS-----TGQVIGIEHVPQLVNSSIQNILHSNA   79 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~-----~~~v~~~d~~~~~~~~a~~~~~~~~~   79 (139)
                      +.|+++++|+++.++++.+...++++.+|||+|||+|+.+..+++..++     ..+|+++|+++++++.|++++.....
T Consensus        56 ~~~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~  135 (223)
T d1r18a_          56 GGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDR  135 (223)
T ss_dssp             ETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             cCCceeehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcch
Confidence            5688999999999999999655889999999999999999999988643     23899999999999999988754110


Q ss_pred             ccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757          80 RLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        80 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                      ......|+.++++|..+++.      +...||.|++..+.+.+++
T Consensus       136 ~~~~~~nv~~~~~d~~~~~~------~~~~fD~Iiv~~a~~~~p~  174 (223)
T d1r18a_         136 SMLDSGQLLIVEGDGRKGYP------PNAPYNAIHVGAAAPDTPT  174 (223)
T ss_dssp             HHHHHTSEEEEESCGGGCCG------GGCSEEEEEECSCBSSCCH
T ss_pred             hhcCccEEEEEecccccccc------cccceeeEEEEeechhchH
Confidence            11123689999999877554      2357999999998776654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=4.1e-18  Score=121.24  Aligned_cols=117  Identities=21%  Similarity=0.300  Sum_probs=89.2

Q ss_pred             hhccccc--ChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccc
Q psy5757           5 KIGAAIG--GISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARL   81 (139)
Q Consensus         5 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~   81 (139)
                      .+|..|.  ....+..+++++....+++++|||+|||+|.++..+++...   +|+|+|+|+.+++.|+++++. +.   
T Consensus        94 ~pg~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~---  167 (254)
T d2nxca1          94 EPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGV---  167 (254)
T ss_dssp             CCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTC---
T ss_pred             ccccccCccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCC---
Confidence            4555553  22346788888887789999999999999999998887653   899999999999999999988 43   


Q ss_pred             ccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          82 LTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        82 ~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                          +.+++++|..+.       .+.++||+|++|...+.+.+......+.++|+|.
T Consensus       168 ----~~~~~~~d~~~~-------~~~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~  213 (254)
T d2nxca1         168 ----RPRFLEGSLEAA-------LPFGPFDLLVANLYAELHAALAPRYREALVPGGR  213 (254)
T ss_dssp             ----CCEEEESCHHHH-------GGGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEE
T ss_pred             ----ceeEEecccccc-------ccccccchhhhccccccHHHHHHHHHHhcCCCcE
Confidence                457888885432       2346899999998877776666666777888774

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.69  E-value=2.7e-17  Score=114.57  Aligned_cols=108  Identities=14%  Similarity=0.214  Sum_probs=85.6

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      .+...+..+.+++.+|||+|||+|..+..+++... +..+++|+|+|+.|++.|+++++. +.     ..++++..+|+.
T Consensus        28 ~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~-----~~~~~~~~~d~~  102 (225)
T d1im8a_          28 AIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIR  102 (225)
T ss_dssp             HHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC-----SSCEEEECSCTT
T ss_pred             HHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc-----cchhhhccchhh
Confidence            34444455678999999999999999999998763 567999999999999999999876 43     367888888854


Q ss_pred             hhhHHHhhhccCCceeEEecCccccccc--cc---eeeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMN--IP---VCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~--~p---~~~~~~~~~p~g~  138 (139)
                      +        .+.+.+|+++++..+||+.  ++   ....|+.++|+|.
T Consensus       103 ~--------~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~  142 (225)
T d1im8a_         103 H--------VEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGV  142 (225)
T ss_dssp             T--------CCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEE
T ss_pred             c--------cccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCce
Confidence            3        2456799999999999985  33   3445889999885

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.66  E-value=6.2e-17  Score=116.47  Aligned_cols=110  Identities=16%  Similarity=0.209  Sum_probs=86.2

Q ss_pred             HHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccc
Q psy5757          15 AILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGM   94 (139)
Q Consensus        15 ~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~   94 (139)
                      ....+++.+. .+.++.+|||+|||+|..+..+++..+..++++|+|+|+.+++.|+++.....      .+++++++|+
T Consensus        14 ~l~~l~~~~~-~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~------~~~~f~~~d~   86 (281)
T d2gh1a1          14 YVSFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YDSEFLEGDA   86 (281)
T ss_dssp             HHHHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS------SEEEEEESCT
T ss_pred             HHHHHHHHHh-ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc------cccccccccc
Confidence            3445555443 25677899999999999999999988656789999999999999999987711      3789999996


Q ss_pred             hhhhHHHhhhccCCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVC---INYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~  138 (139)
                      .+ ++      ..++||+|+++.++||+++|..   ..++.++|+|.
T Consensus        87 ~~-~~------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~  126 (281)
T d2gh1a1          87 TE-IE------LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGK  126 (281)
T ss_dssp             TT-CC------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEE
T ss_pred             cc-cc------ccCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcE
Confidence            54 21      1357999999999999999853   34778888874

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=5.6e-16  Score=111.08  Aligned_cols=103  Identities=13%  Similarity=0.233  Sum_probs=81.3

Q ss_pred             hhhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757           4 VKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL   82 (139)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~   82 (139)
                      +..++.+++|+.-..+...+......+.+|||+|||+|..+..++... |..+++++|+|+.+++.|++|+.. ++    
T Consensus        83 v~~~VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~----  157 (274)
T d2b3ta1          83 VSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAI----  157 (274)
T ss_dssp             CCTTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTC----
T ss_pred             EeccccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCc----
Confidence            456788898884333333333223566789999999999999999988 578999999999999999999998 54    


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                        .+++++++|..+.+       +..+||+|++||++-
T Consensus       158 --~~v~~~~~d~~~~~-------~~~~fDlIvsNPPYi  186 (274)
T d2b3ta1         158 --KNIHILQSDWFSAL-------AGQQFAMIVSNPPYI  186 (274)
T ss_dssp             --CSEEEECCSTTGGG-------TTCCEEEEEECCCCB
T ss_pred             --ccceeeeccccccc-------CCCceeEEEecchhh
Confidence              78999999965522       246899999999853

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.65  E-value=2e-16  Score=112.84  Aligned_cols=113  Identities=17%  Similarity=0.149  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEE
Q psy5757          13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVA   91 (139)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~   91 (139)
                      |.-+..++..+.  +.++++|||+|||+|+++..|++..+|.++|+++|+++++++.|++++.. ..   ...+|+++++
T Consensus        82 pkD~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~---~~~~nv~~~~  156 (264)
T d1i9ga_          82 PKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG---QPPDNWRLVV  156 (264)
T ss_dssp             HHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---SCCTTEEEEC
T ss_pred             hHHHHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc---CCCceEEEEe
Confidence            333677777776  79999999999999999999999998999999999999999999999876 21   1247899999


Q ss_pred             ccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          92 LGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        92 ~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      +|+.+      ...+...||.|+.+.+-.|..  ....++.++|+|.
T Consensus       157 ~d~~~------~~~~~~~fDaV~ldlp~P~~~--l~~~~~~LkpGG~  195 (264)
T d1i9ga_         157 SDLAD------SELPDGSVDRAVLDMLAPWEV--LDAVSRLLVAGGV  195 (264)
T ss_dssp             SCGGG------CCCCTTCEEEEEEESSCGGGG--HHHHHHHEEEEEE
T ss_pred             ccccc------ccccCCCcceEEEecCCHHHH--HHHHHhccCCCCE
Confidence            99654      123457899999865544422  2223666666663

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.65  E-value=1.4e-16  Score=108.84  Aligned_cols=107  Identities=11%  Similarity=0.158  Sum_probs=81.5

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ...+++.+.  ..++++|||+|||+|.++..+++..+   +++++|+|+.+++.++++++. ++    ...++++..+|.
T Consensus        41 t~lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l----~~~~i~~~~~d~  111 (194)
T d1dusa_          41 TKILVENVV--VDKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNL----DNYDIRVVHSDL  111 (194)
T ss_dssp             HHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTC----TTSCEEEEECST
T ss_pred             HHHHHHhCC--cCCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCC----ccceEEEEEcch
Confidence            344555554  57789999999999999999998775   899999999999999999987 43    235689999996


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccc----eeeeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIP----VCINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p----~~~~~~~~~p~g~  138 (139)
                      .+.+       +.++||+|++++++|+..+.    .....+.++|+|.
T Consensus       112 ~~~~-------~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~  152 (194)
T d1dusa_         112 YENV-------KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGE  152 (194)
T ss_dssp             TTTC-------TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEE
T ss_pred             hhhh-------ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcE
Confidence            5422       34689999999999886543    2223455666663

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.64  E-value=1.8e-16  Score=108.44  Aligned_cols=93  Identities=13%  Similarity=0.151  Sum_probs=75.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ++.+|||+|||+|..+..++++..   +++++|+|+.+++.+++.... +.      +++++...|+.+.       ...
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~------~~~~~~~~d~~~~-------~~~   93 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGL------DNLQTDLVDLNTL-------TFD   93 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTC------TTEEEEECCTTTC-------CCC
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccc------cchhhhheecccc-------ccc
Confidence            345999999999999999999874   999999999999999998887 54      7899999996541       134


Q ss_pred             CceeEEecCccccccccce-----eeeeeeccCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPV-----CINYTATMPEG  137 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g  137 (139)
                      ++||+|+++.++|+++.+.     ...++.++|+|
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG  128 (198)
T d2i6ga1          94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGG  128 (198)
T ss_dssp             CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEE
T ss_pred             ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCc
Confidence            6799999999999997652     22355666665

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.63  E-value=1.4e-16  Score=112.99  Aligned_cols=107  Identities=18%  Similarity=0.244  Sum_probs=79.5

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      +..++.++.  +++|++|||+|||+|+++..+++..++.++|+++|.++++++.|++++.. +.     ..++++.++|+
T Consensus        74 ~~~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~-----~~nv~~~~~Di  146 (250)
T d1yb2a1          74 ASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----IGNVRTSRSDI  146 (250)
T ss_dssp             -------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----CTTEEEECSCT
T ss_pred             HHHHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC-----CCceEEEEeee
Confidence            345555554  78999999999999999999999988888999999999999999999987 33     47999999996


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      .+.+       +...||.|+.+.+-.|-  .+...++.++|+|.
T Consensus       147 ~~~~-------~~~~fD~V~ld~p~p~~--~l~~~~~~LKpGG~  181 (250)
T d1yb2a1         147 ADFI-------SDQMYDAVIADIPDPWN--HVQKIASMMKPGSV  181 (250)
T ss_dssp             TTCC-------CSCCEEEEEECCSCGGG--SHHHHHHTEEEEEE
T ss_pred             eccc-------ccceeeeeeecCCchHH--HHHHHHHhcCCCce
Confidence            5522       34679999987654442  12333566677664

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=8.8e-17  Score=111.78  Aligned_cols=97  Identities=13%  Similarity=0.105  Sum_probs=77.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++.+|||+|||+|..+..++.....  +|+++|+|+.+++.|++++.. +.      .+++++++|+.+ +     ..+
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~------~~~~f~~~d~~~-~-----~~~  124 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCCGLQD-F-----TPE  124 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGG------GEEEEEECCGGG-C-----CCC
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccc------cccccccccccc-c-----ccc
Confidence            45679999999999999998766543  899999999999999999877 44      688999999655 2     224


Q ss_pred             CCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      .++||+|++..++||++++.     ...++.++|+|.
T Consensus       125 ~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~  161 (222)
T d2ex4a1         125 PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGI  161 (222)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             cccccccccccccccchhhhhhhHHHHHHHhcCCcce
Confidence            57899999999999998763     233666677663

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=9.8e-17  Score=112.12  Aligned_cols=98  Identities=13%  Similarity=0.206  Sum_probs=74.9

Q ss_pred             HHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHH
Q psy5757          21 SIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIET  100 (139)
Q Consensus        21 ~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  100 (139)
                      ..+.++.+++.+|||+|||+|..+..+++...   +|+|+|+|+.+++.|+++...         +  ++.+|+.+    
T Consensus        34 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~---------~--~~~~~~~~----   95 (246)
T d2avna1          34 SFLEEYLKNPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVK---------N--VVEAKAED----   95 (246)
T ss_dssp             HHHHHHCCSCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCS---------C--EEECCTTS----
T ss_pred             HHHHHhcCCCCEEEEECCCCchhcccccccce---EEEEeeccccccccccccccc---------c--cccccccc----
Confidence            33444567888999999999999999998754   999999999999999886422         2  45677544    


Q ss_pred             HhhhccCCceeEEecC-ccccccccceee---eeeeccCCCC
Q psy5757         101 VELMMKFDRYDFLPHA-PAESWMNIPVCI---NYTATMPEGS  138 (139)
Q Consensus       101 ~~~~~~~~~~D~vi~~-~~~~~~~~p~~~---~~~~~~p~g~  138 (139)
                      +  +.+.++||+|++. .++||+++|...   ..+.++|+|.
T Consensus        96 l--~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~  135 (246)
T d2avna1          96 L--PFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGL  135 (246)
T ss_dssp             C--CSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEE
T ss_pred             c--ccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcE
Confidence            2  2346789999974 689999988643   3678888874

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.62  E-value=5e-16  Score=109.23  Aligned_cols=107  Identities=7%  Similarity=0.090  Sum_probs=79.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+.+.+.....++.+|||+|||+|..+..+++...   +++|+|.|+.|++.|+++.....      .+++++++|+.
T Consensus        24 ~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~------~~v~~~~~d~~   94 (246)
T d1y8ca_          24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQG------LKPRLACQDIS   94 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTT------CCCEEECCCGG
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccC------ccceeeccchh
Confidence            4445555543345668999999999999999999875   89999999999999999887611      37899999965


Q ss_pred             hhhHHHhhhccCCceeEEecC-ccccccccc------eeeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHA-PAESWMNIP------VCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~-~~~~~~~~p------~~~~~~~~~p~g~  138 (139)
                      + ++      ..++||+|++. .+++++..+      ....++.++|+|.
T Consensus        95 ~-~~------~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  137 (246)
T d1y8ca_          95 N-LN------INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGV  137 (246)
T ss_dssp             G-CC------CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEE
T ss_pred             h-hc------ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeE
Confidence            4 21      23579999875 567777644      2344777777774

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.62  E-value=3.3e-16  Score=109.08  Aligned_cols=102  Identities=17%  Similarity=0.211  Sum_probs=79.6

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~   96 (139)
                      ..+++.+.+. .++.+|||+|||+|.++..+++...   +|+|+|+|+++++.|+++..         .+++++.+|+.+
T Consensus         9 ~~~~~~~~~~-~~~~~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~---------~~~~~~~~~~~~   75 (225)
T d2p7ia1           9 PFMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLK---------DGITYIHSRFED   75 (225)
T ss_dssp             HHHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSC---------SCEEEEESCGGG
T ss_pred             HHHHHHhhhh-CCCCcEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhcccc---------cccccccccccc
Confidence            4555666543 4456899999999999999998874   89999999999999987642         478899998544


Q ss_pred             hhHHHhhhccCCceeEEecCccccccccceeee---e-eeccCCCC
Q psy5757          97 RIETVELMMKFDRYDFLPHAPAESWMNIPVCIN---Y-TATMPEGS  138 (139)
Q Consensus        97 ~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~---~-~~~~p~g~  138 (139)
                          +   ...++||+|++..++||+.+|....   + +.++|+|.
T Consensus        76 ----~---~~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~  114 (225)
T d2p7ia1          76 ----A---QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGR  114 (225)
T ss_dssp             ----C---CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEE
T ss_pred             ----c---ccccccccccccceeEecCCHHHHHHHHHHHhcCCCce
Confidence                1   1246899999999999999987643   3 45777773

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=1e-15  Score=110.11  Aligned_cols=96  Identities=16%  Similarity=0.143  Sum_probs=80.6

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ++++++|||||||.|+++..+++..+.  +|+|+++|++.++.|+++.+. ++     ..++.+...|..+         
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~g~--~v~gi~ls~~q~~~a~~~~~~~~l-----~~~~~~~~~d~~~---------  113 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVLASIDT-----NRSRQVLLQGWED---------  113 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTSCC-----SSCEEEEESCGGG---------
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhCce--eEEEecchHHHHHHHHHHHHhhcc-----ccchhhhhhhhhh---------
Confidence            679999999999999999999998754  999999999999999999988 65     4677787777432         


Q ss_pred             cCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                      ..++||.|++...++++..+     ....++.++|+|.
T Consensus       114 ~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~  151 (280)
T d2fk8a1         114 FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGR  151 (280)
T ss_dssp             CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCE
T ss_pred             hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCce
Confidence            24679999999999998765     3445899999995

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=1.4e-15  Score=109.98  Aligned_cols=104  Identities=15%  Similarity=0.064  Sum_probs=84.6

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      ..+++.+.  +++|++|||||||.|+++..+++..+.  +++|+++|++.++.++++... ++     ..++++...|..
T Consensus        51 ~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g~--~v~git~s~~q~~~a~~~~~~~~l-----~~~v~~~~~d~~  121 (291)
T d1kpia_          51 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYDV--NVIGLTLSENQYAHDKAMFDEVDS-----PRRKEVRIQGWE  121 (291)
T ss_dssp             HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHSCC-----SSCEEEEECCGG
T ss_pred             HHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcCc--ceeeccchHHHHHHHHHHHHhhcc-----chhhhhhhhccc
Confidence            34444443  689999999999999999999998864  999999999999999999988 65     467888888832


Q ss_pred             hhhHHHhhhccCCceeEEecCccccccccc------------eeeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMNIP------------VCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p------------~~~~~~~~~p~g~  138 (139)
                               ...++||.|+|...+.|+.++            ....+++++|+|.
T Consensus       122 ---------~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~  167 (291)
T d1kpia_         122 ---------EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGR  167 (291)
T ss_dssp             ---------GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCE
T ss_pred             ---------ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCc
Confidence                     134689999999999998765            2335789999985

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.60  E-value=6.6e-16  Score=109.22  Aligned_cols=101  Identities=14%  Similarity=0.056  Sum_probs=78.5

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      +.+++.+|||+|||+|..+..+++...  ++++|+|+|+.+++.|+++... +.     ..++.++++|+.....     
T Consensus        21 ~~~~~~~VLDlGCG~G~~~~~~~~~~~--~~v~GiD~S~~~l~~A~~r~~~~~~-----~~~v~f~~~D~~~~~~-----   88 (252)
T d1ri5a_          21 YTKRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKR-----RFKVFFRAQDSYGRHM-----   88 (252)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCC-----SSEEEEEESCTTTSCC-----
T ss_pred             hCCCcCEEEEecccCcHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHhcCC-----CcceEEEEcchhhhcc-----
Confidence            457889999999999999999988753  2899999999999999998876 33     3589999999643110     


Q ss_pred             ccCCceeEEecCccccccccce-------eeeeeeccCCCC
Q psy5757         105 MKFDRYDFLPHAPAESWMNIPV-------CINYTATMPEGS  138 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~~~~p~-------~~~~~~~~p~g~  138 (139)
                      ...++||+|++..++||+.++.       ...++.++|+|.
T Consensus        89 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~  129 (252)
T d1ri5a_          89 DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGY  129 (252)
T ss_dssp             CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEE
T ss_pred             cccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCE
Confidence            1245799999999999986542       334677777774

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.60  E-value=7e-16  Score=108.37  Aligned_cols=95  Identities=17%  Similarity=0.281  Sum_probs=74.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .+.++|||+|||+|..+..+++...   +++|+|+|+.|++.|+++++...      .+++++++|+.+    +..   .
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~------~~i~~~~~d~~~----l~~---~  103 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERN------LKIEFLQGDVLE----IAF---K  103 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT------CCCEEEESCGGG----CCC---C
T ss_pred             CCCCEEEEeCCCCCccchhhcccce---EEEEEeecccccccccccccccc------ccchheehhhhh----ccc---c
Confidence            5667999999999999999999764   89999999999999999987721      379999999655    211   3


Q ss_pred             CceeEEecC-ccccccccc-----eeeeeeeccCCCC
Q psy5757         108 DRYDFLPHA-PAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~-~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                      ++||+|++. .+++|+..+     ....++.++|+|.
T Consensus       104 ~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~  140 (251)
T d1wzna1         104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGV  140 (251)
T ss_dssp             SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcE
Confidence            579999885 577776432     3445888888874

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.59  E-value=1.6e-15  Score=107.56  Aligned_cols=96  Identities=17%  Similarity=0.197  Sum_probs=75.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .+..+|||+|||+|..+..++.....  +|+++|+++.+++.|++++..       ..++++.++|+.+ +     ..+.
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~-------~~~~~~~~~d~~~-~-----~~~~  156 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAG-------MPVGKFILASMET-A-----TLPP  156 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTT-------SSEEEEEESCGGG-C-----CCCS
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccc-------cccceeEEccccc-c-----ccCC
Confidence            46679999999999999998876642  899999999999999988755       3568899999654 2     2345


Q ss_pred             CceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      ++||+|++..++||++++.     ...++.++|+|.
T Consensus       157 ~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~  192 (254)
T d1xtpa_         157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGY  192 (254)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             CccceEEeeccccccchhhhHHHHHHHHHhcCCCcE
Confidence            7899999999999998763     333666666663

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.56  E-value=1.4e-14  Score=99.15  Aligned_cols=95  Identities=18%  Similarity=0.207  Sum_probs=71.0

Q ss_pred             hhcccccChHHHHHHHHHhccc-CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPH-LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT   83 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~   83 (139)
                      +..|+.+++++...++..+... -..|++|||+|||+|.++..++.....  +|+++|+++.+++.|+++.         
T Consensus        23 ~leQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~---------   91 (197)
T d1ne2a_          23 YLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNC---------   91 (197)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHC---------
T ss_pred             ccccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHcc---------
Confidence            3456677777777766555421 246899999999999999888887632  8999999999999998875         


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                       .+++++++|+.+         ..++||+|++||+|.
T Consensus        92 -~~~~~~~~D~~~---------l~~~fD~Vi~NPPfg  118 (197)
T d1ne2a_          92 -GGVNFMVADVSE---------ISGKYDTWIMNPPFG  118 (197)
T ss_dssp             -TTSEEEECCGGG---------CCCCEEEEEECCCC-
T ss_pred             -ccccEEEEehhh---------cCCcceEEEeCcccc
Confidence             567889999543         136799999999974

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.2e-15  Score=102.48  Aligned_cols=120  Identities=9%  Similarity=0.014  Sum_probs=87.6

Q ss_pred             cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc--------
Q psy5757           9 AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA--------   79 (139)
Q Consensus         9 ~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~--------   79 (139)
                      ....+..+..+...+.  ..++.+|||+|||+|..+..|++..-   +|+|+|+|+.+++.|+++... ...        
T Consensus        27 ~~~~~~l~~~~~~~l~--~~~~~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~  101 (229)
T d2bzga1          27 EQGHQLLKKHLDTFLK--GKSGLRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPG  101 (229)
T ss_dssp             TTCCHHHHHHHHHHHT--TCCSCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTT
T ss_pred             CCCCHHHHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccc
Confidence            3345555555555554  57888999999999999999999875   999999999999999887653 110        


Q ss_pred             ---ccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757          80 ---RLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus        80 ---~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                         ......+++++++|+.+ +.    ......||+|+...++|++....     ...++.++|+|.
T Consensus       102 ~~~~~~~~~~v~~~~~d~~~-l~----~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~  163 (229)
T d2bzga1         102 TKVFKSSSGNISLYCCSIFD-LP----RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQ  163 (229)
T ss_dssp             CEEEEETTSSEEEEESCGGG-GG----GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEE
T ss_pred             cceeeecCCcEEEEEcchhh-cc----ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcce
Confidence               00123578999999655 21    12346799999999999987543     344777777774

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=6.1e-15  Score=105.30  Aligned_cols=108  Identities=14%  Similarity=0.161  Sum_probs=83.7

Q ss_pred             ChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEE
Q psy5757          12 GISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFV   90 (139)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~   90 (139)
                      -|.-..+++.++.  ++++++|||+|||+|+++..+++..++.++|+++|+++++++.|++++.. +.     ..++.+.
T Consensus        88 ypkd~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~-----~~~v~~~  160 (266)
T d1o54a_          88 YPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----IERVTIK  160 (266)
T ss_dssp             CHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----GGGEEEE
T ss_pred             chHHHHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc-----ccCcEEE
Confidence            3334677788886  89999999999999999999999998889999999999999999999988 54     4688888


Q ss_pred             EccchhhhHHHhhhccCCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757          91 ALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus        91 ~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      ..|+.+.       .....+|.|+...     ++|.   ....+.++|+|.
T Consensus       161 ~~d~~~~-------~~~~~~D~V~~d~-----p~p~~~l~~~~~~LKpGG~  199 (266)
T d1o54a_         161 VRDISEG-------FDEKDVDALFLDV-----PDPWNYIDKCWEALKGGGR  199 (266)
T ss_dssp             CCCGGGC-------CSCCSEEEEEECC-----SCGGGTHHHHHHHEEEEEE
T ss_pred             ecccccc-------ccccceeeeEecC-----CCHHHHHHHHHhhcCCCCE
Confidence            8885432       2345689887654     4443   223566667664

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.4e-15  Score=107.80  Aligned_cols=115  Identities=23%  Similarity=0.284  Sum_probs=82.5

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccc-----ccCCcEEE
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARL-----LTDGHIKF   89 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~-----~~~~~i~~   89 (139)
                      +..++..+.  +.+|++|||+|||+|+++..|++..++.++|+++|+++++++.|+++++. +....     -..+|+++
T Consensus        87 ~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~  164 (324)
T d2b25a1          87 INMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF  164 (324)
T ss_dssp             HHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred             HHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence            667777776  89999999999999999999999998899999999999999999999876 22000     01368999


Q ss_pred             EEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          90 VALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      .++|+.+...    ..+...||.|+...+-.|..  +...++.++|+|.
T Consensus       165 ~~~di~~~~~----~~~~~~fD~V~LD~p~P~~~--l~~~~~~LKpGG~  207 (324)
T d2b25a1         165 IHKDISGATE----DIKSLTFDAVALDMLNPHVT--LPVFYPHLKHGGV  207 (324)
T ss_dssp             EESCTTCCC-----------EEEEEECSSSTTTT--HHHHGGGEEEEEE
T ss_pred             Eecchhhccc----ccCCCCcceEeecCcCHHHH--HHHHHHhccCCCE
Confidence            9999665322    22345699999865544422  2233566666663

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=1.1e-14  Score=104.95  Aligned_cols=96  Identities=16%  Similarity=0.135  Sum_probs=80.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +++|.+|||||||.|.++..+++..+  ++|+|+++|++.++.|+++.+. ++     .+++++...|..+    +    
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~-----~~~v~~~~~d~~~----~----  124 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSEN-----LRSKRVLLAGWEQ----F----  124 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCC-----CSCEEEEESCGGG----C----
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhhh-----hhhhHHHHhhhhc----c----
Confidence            58999999999999999999999986  4999999999999999999887 66     5889999999433    1    


Q ss_pred             cCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                       .++||.|++...+.++...     ....++.++|+|.
T Consensus       125 -~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~  161 (285)
T d1kpga_         125 -DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGV  161 (285)
T ss_dssp             -CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCE
T ss_pred             -cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCc
Confidence             3579999999998888543     3445888999985

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=4.1e-14  Score=97.11  Aligned_cols=101  Identities=20%  Similarity=0.105  Sum_probs=76.7

Q ss_pred             hhcccccChHHHHHHHHHhccc-CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPH-LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT   83 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~   83 (139)
                      ..+++.++++.+..+....... -.+|++|||+|||+|.++..++.+..  .+|+++|+|+.+++.+++++....     
T Consensus        21 ~l~qy~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~-----   93 (201)
T d1wy7a1          21 WLEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFK-----   93 (201)
T ss_dssp             GGTCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGT-----
T ss_pred             ccccCCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcC-----
Confidence            3456667777766666544321 24788999999999999998887653  289999999999999999987721     


Q ss_pred             CCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccc
Q psy5757          84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus        84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~  122 (139)
                       .+.+++.+|..+         ..++||+|++||+++..
T Consensus        94 -~~~~~~~~d~~~---------~~~~fD~Vi~nPP~~~~  122 (201)
T d1wy7a1          94 -GKFKVFIGDVSE---------FNSRVDIVIMNPPFGSQ  122 (201)
T ss_dssp             -TSEEEEESCGGG---------CCCCCSEEEECCCCSSS
T ss_pred             -CCceEEECchhh---------hCCcCcEEEEcCccccc
Confidence             467888888543         13579999999997653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=3.6e-15  Score=106.49  Aligned_cols=101  Identities=15%  Similarity=0.243  Sum_probs=76.5

Q ss_pred             HHHHHHhcccC-CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHL-NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~-~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ..+...+.... .++.+|||+|||+|..+..+++.. +..+++|+|+|+.+++.|+++.          ++++++++|+.
T Consensus        71 ~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~----------~~~~~~~~d~~  139 (268)
T d1p91a_          71 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY----------PQVTFCVASSH  139 (268)
T ss_dssp             HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC----------TTSEEEECCTT
T ss_pred             HHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc----------ccccceeeehh
Confidence            33444443322 567899999999999999999988 5679999999999999988763          67889999965


Q ss_pred             hhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~  138 (139)
                      +    +  +.+.++||+|++..+.|++.+    ..+.++|+|.
T Consensus       140 ~----l--~~~~~sfD~v~~~~~~~~~~e----~~rvLkpgG~  172 (268)
T d1p91a_         140 R----L--PFSDTSMDAIIRIYAPCKAEE----LARVVKPGGW  172 (268)
T ss_dssp             S----C--SBCTTCEEEEEEESCCCCHHH----HHHHEEEEEE
T ss_pred             h----c--cCCCCCEEEEeecCCHHHHHH----HHHHhCCCcE
Confidence            4    2  334678999999988887643    3555666663

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.54  E-value=6.5e-15  Score=99.34  Aligned_cols=110  Identities=13%  Similarity=0.016  Sum_probs=80.5

Q ss_pred             HHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc------ccccCCcEEEEE
Q psy5757          19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA------RLLTDGHIKFVA   91 (139)
Q Consensus        19 ~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~------~~~~~~~i~~~~   91 (139)
                      ....+.  ++++.+|||+|||+|..+..|+++..   +|+|+|+|+.+++.|+++.+. ...      .+....+.+++.
T Consensus        12 ~~~~l~--~~~~~rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (201)
T d1pjza_          12 YWSSLN--VVPGARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC   86 (201)
T ss_dssp             HHHHHC--CCTTCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred             HHHHcC--CCCCCEEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence            344443  68899999999999999999999875   999999999999999998865 210      001124567888


Q ss_pred             ccchhhhHHHhhhccCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757          92 LGMIKRIETVELMMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS  138 (139)
Q Consensus        92 ~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~  138 (139)
                      +|+.+...     .....+|+|++..++|++.+.     ....++.++|+|.
T Consensus        87 ~d~~~l~~-----~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~  133 (201)
T d1pjza_          87 GDFFALTA-----RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS  133 (201)
T ss_dssp             ECCSSSTH-----HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred             cccccccc-----ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcE
Confidence            88665222     123469999999999998753     3445777788774

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.52  E-value=6.9e-15  Score=104.08  Aligned_cols=97  Identities=13%  Similarity=0.066  Sum_probs=79.2

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.+.++|||+|||+|..+..++++. |..+++++|+ +++++.+++++.. +.     ..+++++.+|+.+.        
T Consensus        78 ~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~-----~~rv~~~~~D~~~~--------  142 (253)
T d1tw3a2          78 WTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGL-----SDRVDVVEGDFFEP--------  142 (253)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTC-----TTTEEEEECCTTSC--------
T ss_pred             CccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhc-----ccchhhccccchhh--------
Confidence            3566799999999999999999998 5779999998 5789999998887 55     47899999996541        


Q ss_pred             cCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      ...+||+|+++.++|++.++.     ...+++++|+|.
T Consensus       143 ~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~  180 (253)
T d1tw3a2         143 LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGR  180 (253)
T ss_dssp             CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEE
T ss_pred             cccchhheeeccccccCCchhhHHHHHHHHHhcCCCcE
Confidence            135699999999999987763     345788888885

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.52  E-value=6.8e-15  Score=101.64  Aligned_cols=102  Identities=13%  Similarity=0.120  Sum_probs=74.8

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .++++++|||+|||+|..+..+++.. ++++|+|+|+++.+++.|+++.+.       ..|+.++++|..+ ....  ..
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~-------~~ni~~i~~d~~~-~~~~--~~  121 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRE-------RNNIIPLLFDASK-PWKY--SG  121 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHH-------CSSEEEECSCTTC-GGGT--TT
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhc-------cCCceEEEeeccC-cccc--cc
Confidence            36899999999999999999999988 467999999999999999998876       3689999998665 2221  12


Q ss_pred             cCCceeEEecCcccccccc-ceeeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNI-PVCINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~-p~~~~~~~~~p~g~  138 (139)
                      ..+.+|++++....++... .....++.++|+|.
T Consensus       122 ~~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~  155 (209)
T d1nt2a_         122 IVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGE  155 (209)
T ss_dssp             TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEE
T ss_pred             ccceEEEEEecccChhhHHHHHHHHHHHhccCCe
Confidence            3456888876644333221 12333667777764

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.2e-14  Score=100.06  Aligned_cols=113  Identities=14%  Similarity=0.079  Sum_probs=78.2

Q ss_pred             hhhcccccChHHHH----HHHHHhcccC---CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757           4 VKIGAAIGGISAIL----TYLSIIQPHL---NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus         4 ~~~~~~~~~~~~~~----~~~~~l~~~~---~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      ++.+..++++....    .+.+.+....   .+..++||+|||+|..+..++.+. +..+++|+|+++.+++.|+++++.
T Consensus        29 v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~  107 (250)
T d2h00a1          29 IPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQ  107 (250)
T ss_dssp             CCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHH
T ss_pred             eCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHH
Confidence            44566777665422    3333332111   234589999999999999999988 477999999999999999999998


Q ss_pred             -hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccc
Q psy5757          77 -SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus        77 -~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~  122 (139)
                       ++     ..++.+++.+..+.+.........++||+|+|||+++.-
T Consensus       108 n~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~  149 (250)
T d2h00a1         108 NNL-----SDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFAN  149 (250)
T ss_dssp             TTC-----TTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC--
T ss_pred             hCC-----CcceeeeeeccHHhhhhhhhhcccCceeEEEecCccccc
Confidence             65     467888876543322211112234579999999998853

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-14  Score=100.72  Aligned_cols=100  Identities=12%  Similarity=0.012  Sum_probs=73.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      .++++|||||||+|..+..+++..+  .+++++|+|+.+++.|+++.....      .++..+..++.+    .....+.
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~----~~~~~~~  119 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWED----VAPTLPD  119 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHH----HGGGSCT
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcc------cccccccccccc----ccccccc
Confidence            6788999999999999999998653  389999999999999999987621      467778887544    2233456


Q ss_pred             CceeEEec-----Cccccccccce---eeeeeeccCCCCC
Q psy5757         108 DRYDFLPH-----APAESWMNIPV---CINYTATMPEGSY  139 (139)
Q Consensus       108 ~~~D~vi~-----~~~~~~~~~p~---~~~~~~~~p~g~~  139 (139)
                      ++||.|+.     ...++++.++.   ...++.++|+|.+
T Consensus       120 ~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~  159 (229)
T d1zx0a1         120 GHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVL  159 (229)
T ss_dssp             TCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEE
T ss_pred             ccccceeecccccccccccccCHHHHHHHHHHHcCCCcEE
Confidence            67888874     33455555543   4457888888853

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.50  E-value=2.7e-14  Score=98.30  Aligned_cols=101  Identities=15%  Similarity=0.226  Sum_probs=81.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++..|||||||+|..+..+|+.. |+..++|+|+++.++..|.++... ++      .|+.++++|+.+...    ..+
T Consensus        28 ~~~PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~~l------~Nv~~~~~Da~~l~~----~~~   96 (204)
T d2fcaa1          28 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEA------QNVKLLNIDADTLTD----VFE   96 (204)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCC------SSEEEECCCGGGHHH----HCC
T ss_pred             CCCceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHHhc------cCchhcccchhhhhc----ccC
Confidence            345689999999999999999997 578999999999999999999988 55      899999999765322    235


Q ss_pred             CCceeEEecCccccccccc-----------eeeeeeeccCCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIP-----------VCINYTATMPEGSY  139 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p-----------~~~~~~~~~p~g~~  139 (139)
                      .+++|.|+.+.+..|....           +....+.++|+|.+
T Consensus        97 ~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l  140 (204)
T d2fcaa1          97 PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSI  140 (204)
T ss_dssp             TTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEE
T ss_pred             chhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEE
Confidence            6779999888887776543           23346888999853

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=8.7e-15  Score=100.22  Aligned_cols=87  Identities=17%  Similarity=0.243  Sum_probs=67.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +.++.+|||+|||+|.++..+    .   +++|+|+|+.+++.|+++            ++.++++|+.+ +     +.+
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~~----~---~~~giD~s~~~~~~a~~~------------~~~~~~~d~~~-l-----~~~   88 (208)
T d1vlma_          34 LLPEGRGVEIGVGTGRFAVPL----K---IKIGVEPSERMAEIARKR------------GVFVLKGTAEN-L-----PLK   88 (208)
T ss_dssp             HCCSSCEEEETCTTSTTHHHH----T---CCEEEESCHHHHHHHHHT------------TCEEEECBTTB-C-----CSC
T ss_pred             hCCCCeEEEECCCCccccccc----c---eEEEEeCChhhccccccc------------ccccccccccc-c-----ccc
Confidence            455678999999999987665    2   578999999999988753            57789999654 2     234


Q ss_pred             CCceeEEecCccccccccceeee---eeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPVCIN---YTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g~  138 (139)
                      .++||+|+++.++||+++|....   ++.++|+|.
T Consensus        89 ~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~  123 (208)
T d1vlma_          89 DESFDFALMVTTICFVDDPERALKEAYRILKKGGY  123 (208)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEE
T ss_pred             cccccccccccccccccccccchhhhhhcCCCCce
Confidence            57899999999999999886433   777777774

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-14  Score=103.66  Aligned_cols=105  Identities=11%  Similarity=0.065  Sum_probs=73.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-----CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcE--EEEEccchhhhHH
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-----NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHI--KFVALGMIKRIET  100 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-----~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i--~~~~~d~~~~~~~  100 (139)
                      +..+|||+|||+|.++..+++..     +...+++++|+|+.+++.++++++. ..     ..++  ++...++.+....
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  114 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN-----LENVKFAWHKETSSEYQSR  114 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS-----CTTEEEEEECSCHHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc-----cccccccchhhhhhhhcch
Confidence            33489999999999998887754     1234689999999999999998876 22     2344  4455554332222


Q ss_pred             HhhhccCCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757         101 VELMMKFDRYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus       101 ~~~~~~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      .....+.++||+|++..++||+.+|.   ...++.++|+|.
T Consensus       115 ~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~  155 (280)
T d1jqea_         115 MLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAK  155 (280)
T ss_dssp             HTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEE
T ss_pred             hcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCE
Confidence            22334567899999999999999874   333777777763

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.48  E-value=2.9e-13  Score=88.92  Aligned_cols=89  Identities=18%  Similarity=0.242  Sum_probs=71.4

Q ss_pred             HHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh
Q psy5757          19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        19 ~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      +.++|.. ..++.+|||+|||+|.++..++.+...  +|+++|.++.+++.+++++.. +.     ..+++++++|+.+.
T Consensus         5 ~fn~l~~-~~~g~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~-----~~~~~ii~~D~~~~   76 (152)
T d2esra1           5 IFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKA-----ENRFTLLKMEAERA   76 (152)
T ss_dssp             HHHHHCS-CCCSCEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTC-----GGGEEEECSCHHHH
T ss_pred             HHHHHHh-hCCCCeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhccc-----ccchhhhccccccc
Confidence            4455553 346889999999999999988887643  999999999999999999988 55     46799999997664


Q ss_pred             hHHHhhhccCCceeEEecCcccc
Q psy5757          98 IETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      ++     ...++||+|+++|++.
T Consensus        77 l~-----~~~~~fDiIf~DPPy~   94 (152)
T d2esra1          77 ID-----CLTGRFDLVFLDPPYA   94 (152)
T ss_dssp             HH-----HBCSCEEEEEECCSSH
T ss_pred             cc-----ccccccceeEechhhc
Confidence            43     2356899999999843

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=2.4e-13  Score=91.03  Aligned_cols=94  Identities=15%  Similarity=0.125  Sum_probs=69.9

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      .+.+.+++...+.++.+|||+|||+|.++..++.+..   +++++|.|+.+++.++++++. +.     ..++  ...+.
T Consensus        28 ~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga---~vv~vD~~~~a~~~~~~N~~~~~~-----~~~v--~~~~~   97 (171)
T d1ws6a1          28 RKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGL-----GARV--VALPV   97 (171)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTC-----CCEE--ECSCH
T ss_pred             HHHHHHHhhccccCCCeEEEeccccchhhhhhhhccc---hhhhcccCHHHHhhhhHHHHhhcc-----ccce--eeeeh
Confidence            3455567765678889999999999999999888764   899999999999999999988 54     2344  44443


Q ss_pred             hhhhHHHhhhccCCceeEEecCccccc
Q psy5757          95 IKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      .......  ....++||+|+++|+++.
T Consensus        98 d~~~~~~--~~~~~~fD~If~DPPY~~  122 (171)
T d1ws6a1          98 EVFLPEA--KAQGERFTVAFMAPPYAM  122 (171)
T ss_dssp             HHHHHHH--HHTTCCEEEEEECCCTTS
T ss_pred             hcccccc--cccCCccceeEEcccccc
Confidence            3222221  224568999999999764

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.45  E-value=7.1e-14  Score=97.77  Aligned_cols=99  Identities=14%  Similarity=0.072  Sum_probs=73.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ++++.+|||+|||+|.++..+++.. +.+.|+|+|+|+.+++.++++...       ..++..+.+|... ...    ..
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~-------~~ni~~i~~d~~~-~~~----~~  138 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAE-------RENIIPILGDANK-PQE----YA  138 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTT-------CTTEEEEECCTTC-GGG----GT
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhh-------hcccceEEEeecc-Ccc----cc
Confidence            5889999999999999999999986 578999999999999999988766       3677888888654 221    12


Q ss_pred             CCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757         107 FDRYDFLPHAPAESWMNIPV---CINYTATMPEGS  138 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~  138 (139)
                      ...+|++++...+++..++.   ....+.++|+|.
T Consensus       139 ~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~  173 (230)
T d1g8sa_         139 NIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGY  173 (230)
T ss_dssp             TTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEE
T ss_pred             cccceeEEeeccccchHHHHHHHHHHHHhcccCce
Confidence            23456655556667766653   233556666663

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.44  E-value=1e-12  Score=88.66  Aligned_cols=92  Identities=16%  Similarity=0.133  Sum_probs=74.3

Q ss_pred             HHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh
Q psy5757          19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        19 ~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      +-++|. ...++.+|||++||+|.++...+.+...  +|+++|.++.+++.++++++. +.     ..++++++.|+.+.
T Consensus        32 lFn~l~-~~~~~~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~~~~~-----~~~~~i~~~D~~~~  103 (182)
T d2fhpa1          32 IFNMIG-PYFDGGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKE-----PEKFEVRKMDANRA  103 (182)
T ss_dssp             HHHHHC-SCCSSCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHHHH
T ss_pred             HHHHHH-HhcCCCEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhhhhhc-----ccccccccccchhh
Confidence            334444 3557899999999999999999988753  899999999999999999987 54     45899999998876


Q ss_pred             hHHHhhhccCCceeEEecCcccc
Q psy5757          98 IETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      ++++..  ...+||+|+.+|+++
T Consensus       104 l~~~~~--~~~~fDlIflDPPY~  124 (182)
T d2fhpa1         104 LEQFYE--EKLQFDLVLLDPPYA  124 (182)
T ss_dssp             HHHHHH--TTCCEEEEEECCCGG
T ss_pred             hhhhcc--cCCCcceEEechhhh
Confidence            654422  245799999999865

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.5e-13  Score=93.50  Aligned_cols=101  Identities=13%  Similarity=0.118  Sum_probs=82.1

Q ss_pred             cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEE
Q psy5757          11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKF   89 (139)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~   89 (139)
                      .++. ..+.+..+.. ..+.++|||+|||+|+.+..+++..+.+++++++|.+++..+.|++++.. +.     .+++++
T Consensus        43 i~~~-~g~lL~~L~~-~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~-----~~~i~~  115 (219)
T d2avda1          43 MTCE-QAQLLANLAR-LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----EHKIDL  115 (219)
T ss_dssp             CCHH-HHHHHHHHHH-HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----TTTEEE
T ss_pred             cCHH-HHHHHHHHHH-ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc-----cceEEE
Confidence            3444 4555666653 45668999999999999999999997789999999999999999999998 66     578999


Q ss_pred             EEccchhhhHHHhhhccCCceeEEecCcc
Q psy5757          90 VALGMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      +.+|+.+.++++.......+||+|+....
T Consensus       116 ~~Gda~e~l~~~~~~~~~~~fD~ifiD~d  144 (219)
T d2avda1         116 RLKPALETLDELLAAGEAGTFDVAVVDAD  144 (219)
T ss_dssp             EESCHHHHHHHHHHTTCTTCEEEEEECSC
T ss_pred             EEeehhhcchhhhhhcccCCccEEEEeCC
Confidence            99998887765544434568999999876

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.42  E-value=1.2e-13  Score=96.33  Aligned_cols=83  Identities=19%  Similarity=0.280  Sum_probs=66.7

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +++|++|||+|||+|.++..+++..++.++|+|+|+++.+++.++++++.       ..++..+..|... ...+  ...
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-------~~~~~~i~~d~~~-~~~~--~~~  140 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-------RRNIVPILGDATK-PEEY--RAL  140 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-------CTTEEEEECCTTC-GGGG--TTT
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-------cCCceEEEEECCC-cccc--ccc
Confidence            58999999999999999999999998889999999999999999998766       3567778887654 2222  122


Q ss_pred             CCceeEEecCccc
Q psy5757         107 FDRYDFLPHAPAE  119 (139)
Q Consensus       107 ~~~~D~vi~~~~~  119 (139)
                      ...+|++++..+.
T Consensus       141 ~~~vD~i~~d~~~  153 (227)
T d1g8aa_         141 VPKVDVIFEDVAQ  153 (227)
T ss_dssp             CCCEEEEEECCCS
T ss_pred             ccceEEEEEEccc
Confidence            4578999887553

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.42  E-value=2.5e-13  Score=93.30  Aligned_cols=99  Identities=16%  Similarity=0.205  Sum_probs=79.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ....+||||||+|..+..+|+.. |+..++|+|+++.++..|.++... ++      +|+.++.+|+.+ +.   ...+.
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l------~Ni~~~~~da~~-l~---~~~~~   99 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGV------PNIKLLWVDGSD-LT---DYFED   99 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCC------SSEEEEECCSSC-GG---GTSCT
T ss_pred             CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhcc------ccceeeecCHHH-Hh---hhccC
Confidence            45689999999999999999998 577999999999999999998888 55      899999999776 32   22356


Q ss_pred             CceeEEecCccccccccc-----------eeeeeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIP-----------VCINYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p-----------~~~~~~~~~p~g~  138 (139)
                      .++|.|+++.+-.|....           .....+.++|+|.
T Consensus       100 ~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~  141 (204)
T d1yzha1         100 GEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGE  141 (204)
T ss_dssp             TCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCE
T ss_pred             CceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcE
Confidence            779999888876665532           3344677888885

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.41  E-value=1.2e-12  Score=95.68  Aligned_cols=90  Identities=17%  Similarity=0.308  Sum_probs=73.9

Q ss_pred             HHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhh
Q psy5757          20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRI   98 (139)
Q Consensus        20 ~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~   98 (139)
                      ..++...++++++|||++||+|.++..++.....  +|+++|+++.+++.+++++.. ++     ..+++++++|+.+.+
T Consensus       136 r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl-----~~~~~~~~~d~~~~~  208 (324)
T d2as0a2         136 RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGV-----EDRMKFIVGSAFEEM  208 (324)
T ss_dssp             HHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTC-----GGGEEEEESCHHHHH
T ss_pred             HHHHHhhcCCCCeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCC-----Cccceeeechhhhhh
Confidence            3444445688999999999999999999987632  899999999999999999998 65     468999999988765


Q ss_pred             HHHhhhccCCceeEEecCcc
Q psy5757          99 ETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        99 ~~~~~~~~~~~~D~vi~~~~  118 (139)
                      ..+..  ...+||+|+++++
T Consensus       209 ~~~~~--~~~~fD~Vi~DpP  226 (324)
T d2as0a2         209 EKLQK--KGEKFDIVVLDPP  226 (324)
T ss_dssp             HHHHH--TTCCEEEEEECCC
T ss_pred             HHHHh--ccCCCCchhcCCc
Confidence            54432  3568999999998

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.40  E-value=1.6e-13  Score=97.18  Aligned_cols=97  Identities=12%  Similarity=-0.005  Sum_probs=78.0

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.+..+|||||||+|..+..++++. |..+++++|+ +++++.+++++.. +.     .+++.++.+|+.+.        
T Consensus        79 ~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~-----~~ri~~~~~d~~~~--------  143 (256)
T d1qzza2          79 WSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGL-----ADRVTVAEGDFFKP--------  143 (256)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTC-----TTTEEEEECCTTSC--------
T ss_pred             CccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCC-----cceeeeeeeecccc--------
Confidence            3566799999999999999999998 5789999998 7889999998877 55     47899999996441        


Q ss_pred             cCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                      ....+|++++..++|.+.++.     ...++.++|+|.
T Consensus       144 ~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~  181 (256)
T d1qzza2         144 LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGR  181 (256)
T ss_dssp             CSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred             ccccchhhhccccccccCcHHHHHHHHHHHhhcCCcce
Confidence            124599999999999887753     334677778774

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=1.9e-13  Score=98.20  Aligned_cols=111  Identities=11%  Similarity=0.115  Sum_probs=76.0

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      ..+.+.+.  .+++.+|||+|||+|..+..+++...   +|+|+|+|+.|++.|+++... +..  ....+..+...++.
T Consensus        46 ~~l~~~l~--~~~~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~--~~~~~~~~~~~~~~  118 (292)
T d1xvaa_          46 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKE--PAFDKWVIEEANWL  118 (292)
T ss_dssp             HHHHHHHH--HTTCCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTS--HHHHTCEEEECCGG
T ss_pred             HHHHHHhh--hcCCCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccc--cccceeeeeecccc
Confidence            33444443  35678999999999999999999863   899999999999999988765 220  00123445556643


Q ss_pred             hhhHHHhhhc-cCCceeEEecC-ccccccccc----------eeeeeeeccCCCC
Q psy5757          96 KRIETVELMM-KFDRYDFLPHA-PAESWMNIP----------VCINYTATMPEGS  138 (139)
Q Consensus        96 ~~~~~~~~~~-~~~~~D~vi~~-~~~~~~~~p----------~~~~~~~~~p~g~  138 (139)
                      . ..   ... ..++||+|++. .+++|+.++          ....++.++|+|.
T Consensus       119 ~-~~---~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  169 (292)
T d1xvaa_         119 T-LD---KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGL  169 (292)
T ss_dssp             G-HH---HHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEE
T ss_pred             c-cc---cccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcE
Confidence            3 11   111 24579988864 578888764          3445888888885

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=5.5e-13  Score=92.22  Aligned_cols=96  Identities=15%  Similarity=0.161  Sum_probs=77.7

Q ss_pred             HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757          17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~   95 (139)
                      .+++..+.. ..+.++|||+|||+|+.+..+++..++.++++++|++++..+.|++++.. ++     .++++++.+|..
T Consensus        45 G~lL~~lv~-~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl-----~~~i~l~~Gd~~  118 (214)
T d2cl5a1          45 GQIMDAVIR-EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL-----QDKVTILNGASQ  118 (214)
T ss_dssp             HHHHHHHHH-HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC-----GGGEEEEESCHH
T ss_pred             HHHHHHHHH-hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC-----Cccceeeecccc
Confidence            334444432 23447999999999999999999987678999999999999999999988 76     478999999988


Q ss_pred             hhhHHHhhhccCCceeEEecCcc
Q psy5757          96 KRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      +.++.+......++||+|+....
T Consensus       119 e~l~~l~~~~~~~~~D~ifiD~~  141 (214)
T d2cl5a1         119 DLIPQLKKKYDVDTLDMVFLDHW  141 (214)
T ss_dssp             HHGGGHHHHSCCCCEEEEEECSC
T ss_pred             ccccchhhcccccccceeeeccc
Confidence            87776655555678999998854

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.37  E-value=3.5e-12  Score=92.38  Aligned_cols=102  Identities=15%  Similarity=0.152  Sum_probs=77.2

Q ss_pred             cccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCC
Q psy5757           7 GAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDG   85 (139)
Q Consensus         7 ~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~   85 (139)
                      |-+......-..+.+.+. ...++.+|||++||+|.++..++....   +|+++|.|+.+++.|++++.. ++    ...
T Consensus       111 G~f~dqr~nr~~~~~~~~-~~~~~~rVLdlf~~tG~~sl~aa~~GA---~V~~VD~s~~al~~a~~N~~ln~~----~~~  182 (309)
T d2igta1         111 GVFPEQIVHWEWLKNAVE-TADRPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGL----EQA  182 (309)
T ss_dssp             SCCGGGHHHHHHHHHHHH-HSSSCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTC----TTS
T ss_pred             ccccchhHHHHHHHHHHh-hccCCCeEEEecCCCcHHHHHHHhCCC---eEEEEeChHHHHHHHHHhhhhhcc----cCC
Confidence            333444443344444444 356788999999999999999988764   899999999999999999987 44    234


Q ss_pred             cEEEEEccchhhhHHHhhhccCCceeEEecCcc
Q psy5757          86 HIKFVALGMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        86 ~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      +++++++|+.+.+.....  ...+||+||++|+
T Consensus       183 ~~~~i~~D~~~~l~~~~~--~~~~fD~IilDPP  213 (309)
T d2igta1         183 PIRWICEDAMKFIQREER--RGSTYDIILTDPP  213 (309)
T ss_dssp             CEEEECSCHHHHHHHHHH--HTCCBSEEEECCC
T ss_pred             cEEEEeCCHHHhHHHHhh--cCCCCCEEEECCC
Confidence            699999999886654332  2468999999998

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=2.2e-12  Score=91.93  Aligned_cols=104  Identities=14%  Similarity=0.180  Sum_probs=78.1

Q ss_pred             hhhcccccChHHHHHHHHHhcccC--CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccc
Q psy5757           4 VKIGAAIGGISAILTYLSIIQPHL--NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNAR   80 (139)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~   80 (139)
                      +..++.+++|+ +..+++.+....  .+..+++|+|||+|..+..+++.  +.++++++|+|+.+++.|++|++. +.  
T Consensus        84 v~~~vlIPRpe-TE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~--  158 (271)
T d1nv8a_          84 VEEGVFVPRPE-TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGV--  158 (271)
T ss_dssp             CCTTSCCCCTT-HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTC--
T ss_pred             EecCccCchhh-hhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCC--
Confidence            45677888888 344444443222  34468999999999999998864  467999999999999999999998 55  


Q ss_pred             cccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          81 LLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        81 ~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                         ..++.+..+|..+.+.     ...++||+|++||+.-
T Consensus       159 ---~~~~~i~~~~~~~~~~-----~~~~~fDlIVsNPPYI  190 (271)
T d1nv8a_         159 ---SDRFFVRKGEFLEPFK-----EKFASIEMILSNPPYV  190 (271)
T ss_dssp             ---TTSEEEEESSTTGGGG-----GGTTTCCEEEECCCCB
T ss_pred             ---CceeEEeecccccccc-----cccCcccEEEEccccc
Confidence               4567888888655332     2346899999999843

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.1e-13  Score=97.76  Aligned_cols=118  Identities=8%  Similarity=0.059  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc--cc-ccCCcEE
Q psy5757          13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA--RL-LTDGHIK   88 (139)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~--~~-~~~~~i~   88 (139)
                      +..+..+++.+.  ++++..|||+|||+|..+..+++..+ ..+++|+|+++.+++.|++..+. ..+  .+ +...+++
T Consensus       137 ~~~~~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~  213 (328)
T d1nw3a_         137 FDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT  213 (328)
T ss_dssp             HHHHHHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             HHHHHHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence            344666777764  78899999999999999999998875 34899999999999999887654 210  00 2346899


Q ss_pred             EEEccchhhhHHHhhhccCCceeEEecCccccccccc---eeeeeeeccCCCC
Q psy5757          89 FVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIP---VCINYTATMPEGS  138 (139)
Q Consensus        89 ~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p---~~~~~~~~~p~g~  138 (139)
                      ++++|+.+ .+   ........|+|+++...|+ +++   +...++.++|+|.
T Consensus       214 ~~~gd~~~-~~---~~~~~~~advi~~~~~~f~-~~~~~~l~e~~r~LKpGg~  261 (328)
T d1nw3a_         214 LERGDFLS-EE---WRERIANTSVIFVNNFAFG-PEVDHQLKERFANMKEGGR  261 (328)
T ss_dssp             EEECCTTS-HH---HHHHHHHCSEEEECCTTTC-HHHHHHHHHHHTTCCTTCE
T ss_pred             EEECcccc-cc---cccccCcceEEEEcceecc-hHHHHHHHHHHHhCCCCcE
Confidence            99999765 22   1111123688888765443 332   3445777888874

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=2.9e-12  Score=86.46  Aligned_cols=81  Identities=17%  Similarity=0.118  Sum_probs=67.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ..+.++||++||+|.++...+.+...  +|+.+|.++.+++.+++++..     +...+.+++..|+.+.+.     ...
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~-----~~~~~~~ii~~d~~~~l~-----~~~  109 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLAT-----LKAGNARVVNSNAMSFLA-----QKG  109 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHH-----TTCCSEEEECSCHHHHHS-----SCC
T ss_pred             cchhhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhh-----ccccceeeeeeccccccc-----ccc
Confidence            46789999999999999988887753  899999999999999999987     223788999999766332     235


Q ss_pred             CceeEEecCcccc
Q psy5757         108 DRYDFLPHAPAES  120 (139)
Q Consensus       108 ~~~D~vi~~~~~~  120 (139)
                      .+||+|+++|++.
T Consensus       110 ~~fDlIf~DPPY~  122 (183)
T d2fpoa1         110 TPHNIVFVDPPFR  122 (183)
T ss_dssp             CCEEEEEECCSSS
T ss_pred             cccCEEEEcCccc
Confidence            6799999999855

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.33  E-value=2.7e-12  Score=89.43  Aligned_cols=116  Identities=15%  Similarity=0.123  Sum_probs=85.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM   94 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~   94 (139)
                      ..+.+..+.. ..+.++|||+|+++|+-+..+++..+..++++++|.+++..+.|++++.+ +.     .++++++++++
T Consensus        47 ~g~~L~~L~~-~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~-----~~~i~~~~g~a  120 (227)
T d1susa1          47 EGQFLSMLLK-LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----DHKIDFREGPA  120 (227)
T ss_dssp             HHHHHHHHHH-HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----GGGEEEEESCH
T ss_pred             HHHHHHHHHH-hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc-----ccceeeeehHH
Confidence            4455555543 34568999999999999999999997789999999999999999999998 66     57899999999


Q ss_pred             hhhhHHHhhhc-cCCceeEEecCccccccccceeeeeeeccCCC
Q psy5757          95 IKRIETVELMM-KFDRYDFLPHAPAESWMNIPVCINYTATMPEG  137 (139)
Q Consensus        95 ~~~~~~~~~~~-~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g  137 (139)
                      .+.++++.... ..++||+|+....-..-..-.......+.|+|
T Consensus       121 ~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gG  164 (227)
T d1susa1         121 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGG  164 (227)
T ss_dssp             HHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTC
T ss_pred             HHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCc
Confidence            88777653321 24579999998763322222222234444554

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=1.8e-12  Score=94.66  Aligned_cols=98  Identities=14%  Similarity=0.227  Sum_probs=73.7

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++++|||+|||+|.++..+++.+..  +|+++|.++ ++..|++.... +.     ..+++++++|+.+ +     ..
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~-~~~~a~~~~~~~~~-----~~~i~~i~~~~~~-l-----~~  101 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSS-IIEMAKELVELNGF-----SDKITLLRGKLED-V-----HL  101 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCS--EEEEEESST-HHHHHHHHHHHTTC-----TTTEEEEESCTTT-S-----CC
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCH-HHHHHHHHHHHhCc-----cccceEEEeehhh-c-----cC
Confidence            357899999999999999999998743  999999996 67788887777 55     5789999999654 2     23


Q ss_pred             cCCceeEEecCccccccccce------eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPV------CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~------~~~~~~~~p~g~  138 (139)
                      +..++|+|++....+.+....      ....+.++|+|.
T Consensus       102 ~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~  140 (328)
T d1g6q1_         102 PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGL  140 (328)
T ss_dssp             SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEE
T ss_pred             cccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeE
Confidence            467899999988876655422      222456777763

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=99.33  E-value=9.3e-14  Score=97.95  Aligned_cols=99  Identities=18%  Similarity=0.272  Sum_probs=80.3

Q ss_pred             hhhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5757           4 VKIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLL   82 (139)
Q Consensus         4 ~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~   82 (139)
                      .++|| ++..+.++.++++.+.  +.++..|||||||+|.+|..|++...   +++++|+|+.+++.+++++..      
T Consensus         5 ~k~GQnFL~d~~ii~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~~---~v~aIE~D~~l~~~l~~~~~~------   73 (245)
T d1yuba_           5 IKYSQNFLTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKL------   73 (245)
T ss_dssp             CCSCCCBCCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTT------
T ss_pred             CCCCCcccCCHHHHHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhcC---ceeEeeecccchhhhhhhhhh------
Confidence            46788 5567777889998886  67889999999999999999999875   999999999988877766544      


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                       .+|++++++|+.+ +.     .+....+.+++|.++|
T Consensus        74 -~~n~~ii~~D~l~-~~-----~~~~~~~~vv~NLPY~  104 (245)
T d1yuba_          74 -NTRVTLIHQDILQ-FQ-----FPNKQRYKIVGNIPYH  104 (245)
T ss_dssp             -CSEEEECCSCCTT-TT-----CCCSSEEEEEEECCSS
T ss_pred             -ccchhhhhhhhhc-cc-----cccceeeeEeeeeehh
Confidence             4789999999776 22     2345678899999855

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=4.4e-12  Score=92.37  Aligned_cols=80  Identities=13%  Similarity=0.239  Sum_probs=68.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .++++|||++||+|.++..++....   +|+++|+|+.+++.|+++++. ++      .+++++++|..+....+..  .
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~---~V~~vD~s~~al~~a~~n~~~ngl------~~~~~i~~d~~~~~~~~~~--~  212 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFR---EVVAVDSSAEALRRAEENARLNGL------GNVRVLEANAFDLLRRLEK--E  212 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEE---EEEEEESCHHHHHHHHHHHHHTTC------TTEEEEESCHHHHHHHHHH--T
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCC---cEEeecchHHHHHHHHHHHHHcCC------CCcceeeccHHHHhhhhHh--h
Confidence            4688999999999999999987654   999999999999999999998 55      7899999998875554432  3


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      .++||+|+++++
T Consensus       213 ~~~fD~Vi~DpP  224 (318)
T d1wxxa2         213 GERFDLVVLDPP  224 (318)
T ss_dssp             TCCEEEEEECCC
T ss_pred             hcCCCEEEEcCC
Confidence            468999999987

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=99.31  E-value=8.4e-12  Score=87.27  Aligned_cols=93  Identities=19%  Similarity=0.259  Sum_probs=72.4

Q ss_pred             ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEE
Q psy5757          10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKF   89 (139)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~   89 (139)
                      +-...++.++++.+.  +.++.+|||||||+|.+|..+++...   +++++|+|+.+++.++++...       .+|+++
T Consensus         4 L~d~~i~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~~---~v~avE~D~~l~~~l~~~~~~-------~~n~~i   71 (235)
T d1qama_           4 ITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD-------HDNFQV   71 (235)
T ss_dssp             CCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT-------CCSEEE
T ss_pred             cCCHHHHHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCcC---ceEEEeeccchHHHHHHHhhc-------ccchhh
Confidence            344556667777765  67899999999999999999999875   999999999999999887655       478999


Q ss_pred             EEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          90 VALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      +.+|+.+ +.     .+......|++|.+++
T Consensus        72 ~~~D~l~-~~-----~~~~~~~~vv~NLPYn   96 (235)
T d1qama_          72 LNKDILQ-FK-----FPKNQSYKIFGNIPYN   96 (235)
T ss_dssp             ECCCGGG-CC-----CCSSCCCEEEEECCGG
T ss_pred             hhhhhhh-cc-----ccccccceeeeeehhh
Confidence            9999776 21     1223345678888854

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=3e-12  Score=93.00  Aligned_cols=98  Identities=17%  Similarity=0.225  Sum_probs=72.3

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      +.++++|||+|||+|.++..+++.+..  +|+++|.++. ...+++.... +.     .++++++.+|+.+ +     ..
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~-~~~a~~~~~~n~~-----~~~v~~~~~~~~~-~-----~~   96 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSI-SDYAVKIVKANKL-----DHVVTIIKGKVEE-V-----EL   96 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTT-HHHHHHHHHHTTC-----TTTEEEEESCTTT-C-----CC
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHH-HhhhhhHHHHhCC-----ccccceEeccHHH-c-----cc
Confidence            357899999999999999999997643  8999999975 4666666665 54     4789999999655 2     23


Q ss_pred             cCCceeEEecCccccccccce------eeeeeeccCCCC
Q psy5757         106 KFDRYDFLPHAPAESWMNIPV------CINYTATMPEGS  138 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~~p~------~~~~~~~~p~g~  138 (139)
                      +.+++|+|++....+++....      ....+.++|+|.
T Consensus        97 ~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~  135 (316)
T d1oria_          97 PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGL  135 (316)
T ss_dssp             SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEE
T ss_pred             ccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeE
Confidence            457899999988877655332      223566677663

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.30  E-value=5.2e-12  Score=89.61  Aligned_cols=82  Identities=16%  Similarity=0.099  Sum_probs=68.3

Q ss_pred             hcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHH
Q psy5757          23 IQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETV  101 (139)
Q Consensus        23 l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~  101 (139)
                      +...++++++|||+|||+|.++..++++..  ++|+++|+++.+++.++++++. ++     ..+++++++|+.+..   
T Consensus       101 i~~~~~~g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l-----~~~v~~~~~D~~~~~---  170 (260)
T d2frna1         101 MAKVAKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKV-----EDRMSAYNMDNRDFP---  170 (260)
T ss_dssp             HHHHCCTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTC-----TTTEEEECSCTTTCC---
T ss_pred             HHhhcCCccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCC-----CceEEEEEcchHHhc---
Confidence            333468899999999999999999998763  4999999999999999999998 65     467999999976521   


Q ss_pred             hhhccCCceeEEecCcc
Q psy5757         102 ELMMKFDRYDFLPHAPA  118 (139)
Q Consensus       102 ~~~~~~~~~D~vi~~~~  118 (139)
                          +.+.+|.|+++++
T Consensus       171 ----~~~~~D~Ii~~~p  183 (260)
T d2frna1         171 ----GENIADRILMGYV  183 (260)
T ss_dssp             ----CCSCEEEEEECCC
T ss_pred             ----cCCCCCEEEECCC
Confidence                2357999999876

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.29  E-value=1.9e-11  Score=88.94  Aligned_cols=85  Identities=9%  Similarity=0.041  Sum_probs=70.0

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM  104 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~  104 (139)
                      .+.++++|||++||+|.++..++.....  +|+++|+|+.+++.+++++.. ++    ...+++++.+|+.+.+..+.. 
T Consensus       141 ~~~~g~~VLdlf~~~G~~sl~aa~~ga~--~V~~vD~s~~a~~~a~~N~~~n~l----~~~~~~~i~~d~~~~l~~~~~-  213 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTAAFSVAAAMGGAM--ATTSVDLAKRSRALSLAHFEANHL----DMANHQLVVMDVFDYFKYARR-  213 (317)
T ss_dssp             TTTBTCEEEEETCTTTHHHHHHHHTTBS--EEEEEESCTTHHHHHHHHHHHTTC----CCTTEEEEESCHHHHHHHHHH-
T ss_pred             HhhCCCceeecCCCCcHHHHHHHhCCCc--eEEEecCCHHHHHHHHHHHHHhcc----cCcceEEEEccHHHHHHHHHh-
Confidence            3567899999999999999988875532  899999999999999999987 43    235799999999886665432 


Q ss_pred             ccCCceeEEecCcc
Q psy5757         105 MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 ~~~~~~D~vi~~~~  118 (139)
                       ...+||+|+++|+
T Consensus       214 -~~~~fD~Ii~DPP  226 (317)
T d2b78a2         214 -HHLTYDIIIIDPP  226 (317)
T ss_dssp             -TTCCEEEEEECCC
T ss_pred             -hcCCCCEEEEcCh
Confidence             3468999999987

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.3e-11  Score=87.10  Aligned_cols=83  Identities=14%  Similarity=0.291  Sum_probs=64.5

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      ..++++|||+|||+|.++..+++.+..  +|+++|.++.+.. +++.... +.     ..+++++++|+.+ +     ..
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~--~V~aid~s~~~~~-a~~~~~~~~~-----~~~i~~~~~~~~~-l-----~~   98 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQ-AMDIIRLNKL-----EDTITLIKGKIEE-V-----HL   98 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHH-HHHHHHHTTC-----TTTEEEEESCTTT-S-----CC
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCC--EEEEEeCHHHHHH-HHHHHHHhCC-----CccceEEEeeHHH-h-----cC
Confidence            467899999999999999999998743  8999999998765 4444444 44     4789999999655 2     23


Q ss_pred             cCCceeEEecCccccccc
Q psy5757         106 KFDRYDFLPHAPAESWMN  123 (139)
Q Consensus       106 ~~~~~D~vi~~~~~~~~~  123 (139)
                      +.+++|+|++....|...
T Consensus        99 ~~~~~D~Ivse~~~~~~~  116 (311)
T d2fyta1          99 PVEKVDVIISEWMGYFLL  116 (311)
T ss_dssp             SCSCEEEEEECCCBTTBT
T ss_pred             ccccceEEEEeeeeeecc
Confidence            457899999988877654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.26  E-value=5.7e-11  Score=80.60  Aligned_cols=92  Identities=10%  Similarity=0.182  Sum_probs=74.8

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+++++.  ..++..+||++||+|+.+..+++.. +.++++|+|.++++++.|+++++..      ..++.++++++.
T Consensus        12 l~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~------~~r~~~~~~~f~   82 (192)
T d1m6ya2          12 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEF------SDRVSLFKVSYR   82 (192)
T ss_dssp             HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGG------TTTEEEEECCGG
T ss_pred             HHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhccc------cccccchhHHHh
Confidence            566778886  5888999999999999999999998 5789999999999999999998771      158999999977


Q ss_pred             hhhHHHhhhccCCceeEEecCc
Q psy5757          96 KRIETVELMMKFDRYDFLPHAP  117 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~  117 (139)
                      + +..+......++||.|+...
T Consensus        83 ~-~~~~~~~~~~~~vdgIl~Dl  103 (192)
T d1m6ya2          83 E-ADFLLKTLGIEKVDGILMDL  103 (192)
T ss_dssp             G-HHHHHHHTTCSCEEEEEEEC
T ss_pred             h-HHHHHHHcCCCCcceeeecc
Confidence            6 44333344467899987654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.8e-13  Score=94.43  Aligned_cols=108  Identities=10%  Similarity=0.012  Sum_probs=68.1

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccc-c---------cc------------
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNAR-L---------LT------------   83 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~-~---------~~------------   83 (139)
                      ..++.+|||+|||+|..+..++.....  +|+|+|+|+.+++.|++++.. .... +         +.            
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~--~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  126 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccccC--cEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence            356779999999999988777765432  799999999999999998865 2100 0         00            


Q ss_pred             -CCcE-EEEEccchhhhHHHhhhccCCceeEEecCcccccccc----c---eeeeeeeccCCCC
Q psy5757          84 -DGHI-KFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNI----P---VCINYTATMPEGS  138 (139)
Q Consensus        84 -~~~i-~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~----p---~~~~~~~~~p~g~  138 (139)
                       ...+ .....+...  .......+.++||+|++..++|++..    +   ....++.++|+|.
T Consensus       127 ~~~~~~~~~~~~~~~--~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~  188 (257)
T d2a14a1         127 LRAAVKRVLKCDVHL--GNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGH  188 (257)
T ss_dssp             HHHHEEEEEECCTTS--SSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred             Hhhhhhccccccccc--ccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcE
Confidence             0000 011111100  00112334568999999999999852    2   2445778888774

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=2.4e-11  Score=90.92  Aligned_cols=120  Identities=12%  Similarity=0.080  Sum_probs=80.1

Q ss_pred             ChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc-cc--ccCCcE
Q psy5757          12 GISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA-RL--LTDGHI   87 (139)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~-~~--~~~~~i   87 (139)
                      .+..+..+++.+.  ++++.++||+|||+|..+..+++..+. .+++|+|+++.+++.|+++... ..+ .+  ......
T Consensus       201 ~~~~i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~-~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~  277 (406)
T d1u2za_         201 LPNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV  277 (406)
T ss_dssp             CHHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred             CHHHHHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence            4556788888885  799999999999999999999999853 4899999999999999988765 221 00  111233


Q ss_pred             EE-EEccchhhhHHHhhhccCCceeEEecCccccccccc---eeeeeeeccCCCC
Q psy5757          88 KF-VALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIP---VCINYTATMPEGS  138 (139)
Q Consensus        88 ~~-~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p---~~~~~~~~~p~g~  138 (139)
                      .+ ..+++.+ .+..  ......+|+++.+.. ++.++.   +...++.++|||.
T Consensus       278 ~~~~~~~f~~-~~~~--d~~~~~adVV~inn~-~f~~~l~~~L~ei~r~LKPGGr  328 (406)
T d1u2za_         278 EFSLKKSFVD-NNRV--AELIPQCDVILVNNF-LFDEDLNKKVEKILQTAKVGCK  328 (406)
T ss_dssp             EEEESSCSTT-CHHH--HHHGGGCSEEEECCT-TCCHHHHHHHHHHHTTCCTTCE
T ss_pred             eeeeeechhh-cccc--ccccccceEEEEecc-cCchHHHHHHHHHHHhcCCCcE
Confidence            33 2344332 1111  112345788888754 333332   3445778888874

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=5.5e-11  Score=87.35  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=75.8

Q ss_pred             ccccc-ChHHHHHHHHHhccc--CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757           7 GAAIG-GISAILTYLSIIQPH--LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL   82 (139)
Q Consensus         7 ~~~~~-~~~~~~~~~~~l~~~--~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~   82 (139)
                      ++++. .+.....+.+.+.+.  ..++.+|||+.||+|.++..|++...   +|+|+|.++.+++.|+++++. ++    
T Consensus       187 ~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~---~V~gvE~~~~ai~~A~~na~~n~i----  259 (358)
T d1uwva2         187 RDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGL----  259 (358)
T ss_dssp             SSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTC----
T ss_pred             chhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccccc---EEEeccCcHHHHHHHHHhHHhccc----
Confidence            44443 333444444444332  35778999999999999999999886   999999999999999999998 55    


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCceeEEecCcc
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                        .|++++.++..+.+....  ....++|+|+.+|+
T Consensus       260 --~n~~~~~~~~~~~~~~~~--~~~~~~d~vilDPP  291 (358)
T d1uwva2         260 --QNVTFYHENLEEDVTKQP--WAKNGFDKVLLDPA  291 (358)
T ss_dssp             --CSEEEEECCTTSCCSSSG--GGTTCCSEEEECCC
T ss_pred             --ccceeeecchhhhhhhhh--hhhccCceEEeCCC
Confidence              899999998766443221  12356899999997

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=9e-11  Score=82.70  Aligned_cols=98  Identities=14%  Similarity=0.085  Sum_probs=74.0

Q ss_pred             cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEE
Q psy5757           9 AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIK   88 (139)
Q Consensus         9 ~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~   88 (139)
                      ++..+.++.++++.+.  ..++..|||||||+|.+|..|++...   +++++|+|+.+++.+++....       .++++
T Consensus         3 FL~d~~~~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------~~~~~   70 (252)
T d1qyra_           3 FLNDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERLD---QLTVIELDRDLAARLQTHPFL-------GPKLT   70 (252)
T ss_dssp             EECCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTCS---CEEEECCCHHHHHHHHTCTTT-------GGGEE
T ss_pred             ccCCHHHHHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccCC---ceEEEEeccchhHHHHHHhhh-------ccchh
Confidence            3456677888888886  57888999999999999999999875   899999999999998876543       37899


Q ss_pred             EEEccchhh-hHHHhhhccCCceeEEecCcccc
Q psy5757          89 FVALGMIKR-IETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        89 ~~~~d~~~~-~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      ++.+|+.+. +.++...  .+.--.|++|.+++
T Consensus        71 ii~~D~l~~~~~~~~~~--~~~~~~vvgNlPY~  101 (252)
T d1qyra_          71 IYQQDAMTFNFGELAEK--MGQPLRVFGNLPYN  101 (252)
T ss_dssp             EECSCGGGCCHHHHHHH--HTSCEEEEEECCTT
T ss_pred             HHhhhhhhhcccccccc--cCCCeEEEecchHH
Confidence            999998862 2222211  12234677887744

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=9.3e-12  Score=88.19  Aligned_cols=109  Identities=11%  Similarity=-0.050  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc-cc-----------------------c
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA-RL-----------------------L   82 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~-~~-----------------------~   82 (139)
                      .++.++||+|||+|..+...+.....  +|+++|+|+.+++.+++++.. ... .|                       .
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~--~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCS--EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCC--eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            56789999999999887655544432  899999999999999988754 210 00                       0


Q ss_pred             cCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccccc----c---eeeeeeeccCCCC
Q psy5757          83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNI----P---VCINYTATMPEGS  138 (139)
Q Consensus        83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~----p---~~~~~~~~~p~g~  138 (139)
                      ..........|+.+...........++||+|++..++|++..    +   +...++.++|+|.
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~  193 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGH  193 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEE
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCE
Confidence            000112233343221110001112347999999999999852    2   3445888888874

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=4.6e-10  Score=80.04  Aligned_cols=93  Identities=18%  Similarity=0.236  Sum_probs=74.6

Q ss_pred             ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEE
Q psy5757          10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIK   88 (139)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~   88 (139)
                      +..+.++.++++.+.  ..++..|||||+|+|.+|..|++...   +++++|+|+.+++.+++.+.. ..     ..+++
T Consensus         4 L~d~~i~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~~---~v~aiE~D~~l~~~L~~~~~~~~~-----~~~~~   73 (278)
T d1zq9a1           4 LKNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPV-----ASKLQ   73 (278)
T ss_dssp             ECCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTT-----GGGEE
T ss_pred             cCCHHHHHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcCC---cEEEEEEccchhHHHHHHHhhhcc-----ccchh
Confidence            445667777877775  57888999999999999999999875   999999999999999998866 22     36899


Q ss_pred             EEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          89 FVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        89 ~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      ++.+|+.+ +       .....+.|++|.+++
T Consensus        74 ~i~~D~l~-~-------~~~~~~~vV~NLPY~   97 (278)
T d1zq9a1          74 VLVGDVLK-T-------DLPFFDTCVANLPYQ   97 (278)
T ss_dssp             EEESCTTT-S-------CCCCCSEEEEECCGG
T ss_pred             hhHHHHhh-h-------hhhhhhhhhcchHHH
Confidence            99999765 1       123457889998854

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=3.2e-10  Score=82.31  Aligned_cols=104  Identities=9%  Similarity=0.112  Sum_probs=76.4

Q ss_pred             hhcccccChHHHHHHHHHhccc--CCCCCeEEEEcccCChhHHHHHHHcC----CCceEEEEeCCHHHHHHHHHHHHhhc
Q psy5757           5 KIGAAIGGISAILTYLSIIQPH--LNENSKVLEIGSGSGYLTNMISELMN----STGQVIGIEHVPQLVNSSIQNILHSN   78 (139)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~iLdiG~G~G~~~~~l~~~~~----~~~~v~~~d~~~~~~~~a~~~~~~~~   78 (139)
                      ..|+.++++.++..+.+.+...  .+++.+|+|.+||+|.+...+.+.+.    ...+++|+|+++.++..|+.++....
T Consensus        91 ~~g~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~  170 (328)
T d2f8la1          91 QVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR  170 (328)
T ss_dssp             CGGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             cCCeEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh
Confidence            3466777777777777666432  35667899999999999999887652    23479999999999999988877622


Q ss_pred             cccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757          79 ARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        79 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                            .+....++|...       .....+||+|++||++..
T Consensus       171 ------~~~~~~~~d~~~-------~~~~~~fD~vi~NPPy~~  200 (328)
T d2f8la1         171 ------QKMTLLHQDGLA-------NLLVDPVDVVISDLPVGY  200 (328)
T ss_dssp             ------CCCEEEESCTTS-------CCCCCCEEEEEEECCCSE
T ss_pred             ------hhhhhhcccccc-------ccccccccccccCCCCCC
Confidence                  456677777433       123568999999999753

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.04  E-value=6.5e-10  Score=74.65  Aligned_cols=85  Identities=14%  Similarity=0.099  Sum_probs=66.2

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      ..+.++||+.||||.++...+.+...  +|+.+|.+..+++..+++++. +.    ......++..|..+.+.   ....
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~----~~~~~~~~~~d~~~~l~---~~~~  112 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKC----SSEQAEVINQSSLDFLK---QPQN  112 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTC----CTTTEEEECSCHHHHTT---SCCS
T ss_pred             cccceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcc----ccccccccccccccccc---cccc
Confidence            46789999999999999999998864  999999999999999999987 43    12356777777654332   1222


Q ss_pred             CCceeEEecCccccc
Q psy5757         107 FDRYDFLPHAPAESW  121 (139)
Q Consensus       107 ~~~~D~vi~~~~~~~  121 (139)
                      ..+||+|++.|+++.
T Consensus       113 ~~~fDlIFlDPPY~~  127 (183)
T d2ifta1         113 QPHFDVVFLDPPFHF  127 (183)
T ss_dssp             SCCEEEEEECCCSSS
T ss_pred             CCcccEEEechhHhh
Confidence            346999999999654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.91  E-value=2.5e-09  Score=72.96  Aligned_cols=89  Identities=12%  Similarity=0.143  Sum_probs=67.4

Q ss_pred             ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEE
Q psy5757          10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKF   89 (139)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~   89 (139)
                      +++++++..+++.+.  .+++.+|||.|||+|.+...+.+.......++|+|+++..+..              ..+..+
T Consensus         2 ~TP~~i~~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~--------------~~~~~~   65 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL--------------PPWAEG   65 (223)
T ss_dssp             CCCHHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC--------------CTTEEE
T ss_pred             CCCHHHHHHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh--------------ccccee
Confidence            456777888888875  5788899999999999999998887656689999999753321              135567


Q ss_pred             EEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757          90 VALGMIKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      +++|...       .....+||++++|+++..
T Consensus        66 ~~~~~~~-------~~~~~~fd~ii~npP~~~   90 (223)
T d2ih2a1          66 ILADFLL-------WEPGEAFDLILGNPPYGI   90 (223)
T ss_dssp             EESCGGG-------CCCSSCEEEEEECCCCCC
T ss_pred             eeeehhc-------cccccccceecccCcccc
Confidence            7888543       123568999999999654

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.90  E-value=5.5e-09  Score=78.30  Aligned_cols=103  Identities=14%  Similarity=0.129  Sum_probs=80.9

Q ss_pred             hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCC------------ceEEEEeCCHHHHHHHHHH
Q psy5757           6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNST------------GQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~------------~~v~~~d~~~~~~~~a~~~   73 (139)
                      .|+.+++.+++..+++.+.  ..++.+|+|.+||+|.+...+.+.....            ..++|+|+++.+...|+.+
T Consensus       141 ~G~f~TP~~Iv~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n  218 (425)
T d2okca1         141 AGQYFTPRPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN  218 (425)
T ss_dssp             CGGGCCCHHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred             chhhccchhhhHhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhh
Confidence            5889999999999999986  3677899999999999999988876321            2599999999999999988


Q ss_pred             HHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757          74 ILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus        74 ~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~  121 (139)
                      +.. +.    ...+..+..+|..+       ..+..+||+|++||++..
T Consensus       219 ~~l~g~----~~~~~~i~~~d~l~-------~~~~~~fD~Ii~NPPfg~  256 (425)
T d2okca1         219 LYLHGI----GTDRSPIVCEDSLE-------KEPSTLVDVILANPPFGT  256 (425)
T ss_dssp             HHHTTC----CSSCCSEEECCTTT-------SCCSSCEEEEEECCCSSC
T ss_pred             hhhcCC----ccccceeecCchhh-------hhcccccceEEecCCCCC
Confidence            766 33    22345677777543       123567999999999864

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.74  E-value=7.4e-08  Score=64.37  Aligned_cols=87  Identities=15%  Similarity=0.120  Sum_probs=68.0

Q ss_pred             HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757          16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI   95 (139)
Q Consensus        16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~   95 (139)
                      ...+++.+.  .++++.++|..+|.|+.+..+.+..   ++|+|+|.+++++..+++..         ..++.++++++.
T Consensus         7 l~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~~---~~viaiD~D~~ai~~a~~~~---------~~~~~~~~~~f~   72 (182)
T d1wg8a2           7 YQEALDLLA--VRPGGVYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKGLH---------LPGLTVVQGNFR   72 (182)
T ss_dssp             HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHTC---------CTTEEEEESCGG
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhccc---CcEEEEhhhhhHHHHHhhcc---------ccceeEeehHHH
Confidence            455667775  5889999999999999999999864   49999999999999887642         368899999877


Q ss_pred             hhhHHHhhhccCCceeEEecCc
Q psy5757          96 KRIETVELMMKFDRYDFLPHAP  117 (139)
Q Consensus        96 ~~~~~~~~~~~~~~~D~vi~~~  117 (139)
                      + +.........+.+|.|+...
T Consensus        73 ~-~~~~l~~~~~~~vdgIl~DL   93 (182)
T d1wg8a2          73 H-LKRHLAALGVERVDGILADL   93 (182)
T ss_dssp             G-HHHHHHHTTCSCEEEEEEEC
T ss_pred             H-HHHHHHHcCCCccCEEEEEc
Confidence            6 44433333456799998765

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.67  E-value=5.4e-08  Score=70.18  Aligned_cols=86  Identities=16%  Similarity=0.181  Sum_probs=66.7

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .+..++||.+|.|.|.....+.+.. +..+++++|+++.+++.+++.+.......+..++++++.+|+.+.+.+     .
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~-----~  148 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER-----T  148 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-----C
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhh-----c
Confidence            3566899999999999999998865 456999999999999999998754111113467999999998775542     3


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      .++||+|++...
T Consensus       149 ~~~yDvIi~D~~  160 (312)
T d1uira_         149 EERYDVVIIDLT  160 (312)
T ss_dssp             CCCEEEEEEECC
T ss_pred             CCcccEEEEeCC
Confidence            467999997664

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.64  E-value=7.7e-09  Score=72.28  Aligned_cols=88  Identities=19%  Similarity=0.197  Sum_probs=64.4

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ....+|||+|||+|..+..++++. |+.+++.+|.. +.++.      ...     .++++++.+|+.+.       .+ 
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~------~~~-----~~ri~~~~gd~~~~-------~p-  138 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLP-QVIEN------APP-----LSGIEHVGGDMFAS-------VP-  138 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHTT------CCC-----CTTEEEEECCTTTC-------CC-
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecch-hhhhc------cCC-----CCCeEEecCCcccc-------cc-
Confidence            455799999999999999999999 68899999975 33321      111     47899999996541       12 


Q ss_pred             CceeEEecCccccccccceee-----eeeeccCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPVCI-----NYTATMPEG  137 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~~~-----~~~~~~p~g  137 (139)
                       ..|++++..++|...+..++     .+.++.|+|
T Consensus       139 -~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg  172 (244)
T d1fp1d2         139 -QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNG  172 (244)
T ss_dssp             -CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred             -cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCc
Confidence             35999999999998875433     255555555

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.61  E-value=8.4e-09  Score=72.08  Aligned_cols=88  Identities=17%  Similarity=0.251  Sum_probs=65.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ....+|||+|||+|..+..++++. |+.+++..|.. +.++.+      ..     .++++++.+|+.+.         .
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~vi~~~------~~-----~~rv~~~~gD~f~~---------~  136 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDRP-QVVENL------SG-----SNNLTYVGGDMFTS---------I  136 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HHHTTC------CC-----BTTEEEEECCTTTC---------C
T ss_pred             cCceEEEEecCCccHHHHHHHHhC-CCCeEEEecCH-HHHHhC------cc-----cCceEEEecCcccC---------C
Confidence            345689999999999999999999 57899999985 333322      11     37899999996541         1


Q ss_pred             CceeEEecCccccccccceee-----eeeeccCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPVCI-----NYTATMPEG  137 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~~~-----~~~~~~p~g  137 (139)
                      ..+|+++...++|...+..+.     .+.+++|+|
T Consensus       137 p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg  171 (244)
T d1fp2a2         137 PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDG  171 (244)
T ss_dssp             CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGG
T ss_pred             CCCcEEEEEeecccCChHHHHHHHHHHHHHcCccc
Confidence            247999999999998887533     355666664

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.1e-07  Score=66.44  Aligned_cols=89  Identities=9%  Similarity=0.191  Sum_probs=71.0

Q ss_pred             HHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh
Q psy5757          19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR   97 (139)
Q Consensus        19 ~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~   97 (139)
                      ....+.  ..++.+|||.+||.|+-+..++..+...++++++|+++.-++.+++++++ +.      .++.+...|..+.
T Consensus        86 ~~~~L~--~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~------~~~~~~~~d~~~~  157 (293)
T d2b9ea1          86 PAMLLD--PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------SCCELAEEDFLAV  157 (293)
T ss_dssp             HHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------CSEEEEECCGGGS
T ss_pred             cccccC--CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc------cceeeeehhhhhh
Confidence            334444  57899999999999999999999887778999999999999999999999 55      8899999886652


Q ss_pred             hHHHhhhccCCceeEEecCcc
Q psy5757          98 IETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        98 ~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      -+.   ....++||.|+..++
T Consensus       158 ~~~---~~~~~~fD~VL~DaP  175 (293)
T d2b9ea1         158 SPS---DPRYHEVHYILLDPS  175 (293)
T ss_dssp             CTT---CGGGTTEEEEEECCC
T ss_pred             ccc---ccccceeeEEeecCc
Confidence            111   112357999988876

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=2.4e-07  Score=63.05  Aligned_cols=76  Identities=12%  Similarity=0.081  Sum_probs=63.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ++.+++|+|||.|..+..++-.. |+.+++.+|.+..-+...++.... ++      .|+++++..+.+ +      ...
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~-~------~~~  130 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKL------ENIEPVQSRVEE-F------PSE  130 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTC------SSEEEEECCTTT-S------CCC
T ss_pred             cCCceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHHHHcCC------cceeeeccchhh-h------ccc
Confidence            45799999999999999999877 678999999999999999988887 54      899999988544 1      123


Q ss_pred             CceeEEecCcc
Q psy5757         108 DRYDFLPHAPA  118 (139)
Q Consensus       108 ~~~D~vi~~~~  118 (139)
                      .+||+|++...
T Consensus       131 ~~fD~V~sRA~  141 (207)
T d1jsxa_         131 PPFDGVISRAF  141 (207)
T ss_dssp             SCEEEEECSCS
T ss_pred             cccceehhhhh
Confidence            57999998886

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.56  E-value=2e-07  Score=66.62  Aligned_cols=83  Identities=17%  Similarity=0.137  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      +..++||-+|.|.|.....+.+.. +..+++++|+++.+++.+++.+.. ..  .+..++++++.+|+.+.+.+     .
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~--~~~d~rv~v~~~Da~~~l~~-----~  159 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSC--GFDDPRAEIVIANGAEYVRK-----F  159 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHGGG-----C
T ss_pred             CCCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcc--cccCCCcEEEhhhHHHHHhc-----C
Confidence            566899999999999999999876 345899999999999999998754 21  13468999999998775542     3


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      .++||+|++...
T Consensus       160 ~~~yDvIi~D~~  171 (295)
T d1inla_         160 KNEFDVIIIDST  171 (295)
T ss_dssp             SSCEEEEEEEC-
T ss_pred             CCCCCEEEEcCC
Confidence            467999998764

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=2.9e-07  Score=70.51  Aligned_cols=107  Identities=14%  Similarity=0.094  Sum_probs=74.1

Q ss_pred             hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCC-----------------ceEEEEeCCHHHHH
Q psy5757           6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNST-----------------GQVIGIEHVPQLVN   68 (139)
Q Consensus         6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~-----------------~~v~~~d~~~~~~~   68 (139)
                      .|+.+++.+++..|++.+.  ..++.+|+|..||+|.+...+.+.+...                 ..++|+|+++.+..
T Consensus       143 ~GqfyTP~~Iv~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~  220 (524)
T d2ar0a1         143 AGQYFTPRPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR  220 (524)
T ss_dssp             --CCCCCHHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred             cchhccccchhHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHH
Confidence            4889999999999999886  3677899999999999998887765211                 15899999999999


Q ss_pred             HHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757          69 SSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES  120 (139)
Q Consensus        69 ~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~  120 (139)
                      .|+.++.. +....+. ..-.+..++...  .   ......+||+|++||+|.
T Consensus       221 la~~nl~l~~~~~~i~-~~~~~~~~~~l~--~---d~~~~~kfD~Ii~NPPfg  267 (524)
T d2ar0a1         221 LALMNCLLHDIEGNLD-HGGAIRLGNTLG--S---DGENLPKAHIVATNPPFG  267 (524)
T ss_dssp             HHHHHHHTTTCCCBGG-GTBSEEESCTTS--H---HHHTSCCEEEEEECCCCT
T ss_pred             HHHHHHHhhccccccc-ccchhhhhhhhh--h---cccccccceeEEecCCcc
Confidence            99988865 3211110 111233444322  0   111346799999999975

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=2.7e-07  Score=66.70  Aligned_cols=82  Identities=12%  Similarity=0.075  Sum_probs=65.6

Q ss_pred             hcc-cccChHHHHHHHHHhc--ccC--CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccc
Q psy5757           6 IGA-AIGGISAILTYLSIIQ--PHL--NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNAR   80 (139)
Q Consensus         6 ~~~-~~~~~~~~~~~~~~l~--~~~--~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~   80 (139)
                      +|+ ++..+.+...+++.+.  ...  .++..|||+|+|.|.+|..+.+...++ +++++|+++...+..++.+..    
T Consensus        15 ~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~-~v~~iE~D~~~~~~L~~~~~~----   89 (322)
T d1i4wa_          15 YGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPR-QYSLLEKRSSLYKFLNAKFEG----   89 (322)
T ss_dssp             GGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCS-EEEEECCCHHHHHHHHHHTTT----
T ss_pred             ccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCC-EEEEEECCHHHHHHHHHhccC----
Confidence            677 5677888888888874  111  246789999999999999999986433 899999999999988876544    


Q ss_pred             cccCCcEEEEEccchh
Q psy5757          81 LLTDGHIKFVALGMIK   96 (139)
Q Consensus        81 ~~~~~~i~~~~~d~~~   96 (139)
                          .+++++++|+.+
T Consensus        90 ----~~~~ii~~D~l~  101 (322)
T d1i4wa_          90 ----SPLQILKRDPYD  101 (322)
T ss_dssp             ----SSCEEECSCTTC
T ss_pred             ----CCcEEEeCchhh
Confidence                678999999876

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.53  E-value=3.7e-07  Score=64.58  Aligned_cols=84  Identities=14%  Similarity=0.158  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .++.++||-+|.|.|..+..+.+..+ ..+++.+|+++..++.|++.+.. ..  .+..++++++.+|+.+.+.+     
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~--~~~d~r~~i~~~D~~~~l~~-----  144 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAG--KLDDPRVDVQVDDGFMHIAK-----  144 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHT--TTTSTTEEEEESCSHHHHHT-----
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcc--cccCCCeEEEechHHHHHhh-----
Confidence            35668999999999999999998753 44999999999999999998754 11  14468999999998775542     


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ..++||+|+....
T Consensus       145 ~~~~yDvIi~D~~  157 (274)
T d1iy9a_         145 SENQYDVIMVDST  157 (274)
T ss_dssp             CCSCEEEEEESCS
T ss_pred             cCCCCCEEEEcCC
Confidence            3568999998875

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=5.5e-07  Score=64.02  Aligned_cols=85  Identities=14%  Similarity=0.139  Sum_probs=66.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .+..++||-+|.|.|..+..+.+..+ ..+++.+|+++.+++.|++.+.... ..+..++++++.+|+.+.+.+     .
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~-~~~~d~rv~i~~~Da~~~l~~-----~  148 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMA-IGYSSSKLTLHVGDGFEFMKQ-----N  148 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHH-GGGGCTTEEEEESCHHHHHHT-----C
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhc-cccCCCCceEEEccHHHHHhc-----C
Confidence            35668999999999999999998753 4499999999999999999875410 113468999999998775542     3


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      .++||+|++...
T Consensus       149 ~~~yDvIi~D~~  160 (285)
T d2o07a1         149 QDAFDVIITDSS  160 (285)
T ss_dssp             SSCEEEEEEECC
T ss_pred             CCCCCEEEEcCC
Confidence            468999998864

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.45  E-value=6.6e-07  Score=63.29  Aligned_cols=84  Identities=17%  Similarity=0.101  Sum_probs=63.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hc----cccccCCcEEEEEccchhhhHHH
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SN----ARLLTDGHIKFVALGMIKRIETV  101 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~----~~~~~~~~i~~~~~d~~~~~~~~  101 (139)
                      .++.++||.+|+|.|.....+.+.. . .+++.+|+++.+++.|++.+.. ..    ......++++++.+|+.+.+.+ 
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~-~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-  146 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHD-V-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-  146 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSC-C-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred             CCCCceEEEecCCchHHHHHHHHhC-C-ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-
Confidence            4667899999999999999988754 3 4899999999999999987643 10    0002357899999998775431 


Q ss_pred             hhhccCCceeEEecCcc
Q psy5757         102 ELMMKFDRYDFLPHAPA  118 (139)
Q Consensus       102 ~~~~~~~~~D~vi~~~~  118 (139)
                           .++||+|+....
T Consensus       147 -----~~~yDvIi~D~~  158 (276)
T d1mjfa_         147 -----NRGFDVIIADST  158 (276)
T ss_dssp             -----CCCEEEEEEECC
T ss_pred             -----cCCCCEEEEeCC
Confidence                 467999998765

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.44  E-value=4.9e-07  Score=65.00  Aligned_cols=85  Identities=11%  Similarity=0.132  Sum_probs=67.2

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .+..++||-+|.|.|.....+.+..+ -.+++.+|+++.+++.+++.+.... ..+..++++++.+|+.+.+.+     .
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~~~~-~~~~dprv~i~i~Da~~~l~~-----~  176 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMS-CGFSHPKLDLFCGDGFEFLKN-----H  176 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTS-GGGGCTTEEEECSCHHHHHHH-----C
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhchhhc-cccCCCCeEEEEchHHHHHHh-----C
Confidence            35668999999999999999998663 3499999999999999999875411 114468999999998775542     3


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      .++||+|+....
T Consensus       177 ~~~yDvII~D~~  188 (312)
T d2b2ca1         177 KNEFDVIITDSS  188 (312)
T ss_dssp             TTCEEEEEECCC
T ss_pred             CCCCCEEEEcCC
Confidence            567999998865

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.41  E-value=2.8e-06  Score=61.04  Aligned_cols=87  Identities=10%  Similarity=0.102  Sum_probs=70.1

Q ss_pred             HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchh
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~   96 (139)
                      .....+.  .+++.+|||++||.|+-+..++.....++.+++.|+++.-+...++++++ +.      .++.....|...
T Consensus       107 l~~~~l~--~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~------~~i~~~~~d~~~  178 (313)
T d1ixka_         107 YPPVALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------LNVILFHSSSLH  178 (313)
T ss_dssp             HHHHHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------CSEEEESSCGGG
T ss_pred             chhhccc--CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh------hccccccccccc
Confidence            3344443  58899999999999999999999998788999999999999999999998 55      788888877554


Q ss_pred             hhHHHhhhccCCceeEEecCcc
Q psy5757          97 RIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        97 ~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                       +.     .....||.|+..++
T Consensus       179 -~~-----~~~~~fD~ILvDaP  194 (313)
T d1ixka_         179 -IG-----ELNVEFDKILLDAP  194 (313)
T ss_dssp             -GG-----GGCCCEEEEEEECC
T ss_pred             -cc-----cccccccEEEEccc
Confidence             22     22457999988765

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.41  E-value=1.2e-06  Score=62.45  Aligned_cols=85  Identities=19%  Similarity=0.128  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ++.++||-+|.|.|.....+.+..+ -.+++++|+++++++.+++.+.... ..+..++++++.+|+.+.+.+    .+.
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~-~~~~~~r~~i~~~Da~~~l~~----~~~  152 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVA-IGYEDPRVNLVIGDGVAFLKN----AAE  152 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHH-GGGGSTTEEEEESCHHHHHHT----SCT
T ss_pred             CCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhh-ccccCCCcEEEEccHHHHHhh----ccc
Confidence            5667999999999999999988763 3489999999999999999875410 013458999999998775542    234


Q ss_pred             CceeEEecCcc
Q psy5757         108 DRYDFLPHAPA  118 (139)
Q Consensus       108 ~~~D~vi~~~~  118 (139)
                      ++||+|+....
T Consensus       153 ~~yDvIi~D~~  163 (290)
T d1xj5a_         153 GSYDAVIVDSS  163 (290)
T ss_dssp             TCEEEEEECCC
T ss_pred             cCccEEEEcCC
Confidence            58999998765

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.38  E-value=5.9e-07  Score=60.28  Aligned_cols=123  Identities=8%  Similarity=0.115  Sum_probs=70.8

Q ss_pred             ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhH----HHHHHHcC---CCceEEEEeCCHHHHHHHHHHHHh-hc-c-
Q psy5757          10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLT----NMISELMN---STGQVIGIEHVPQLVNSSIQNILH-SN-A-   79 (139)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~----~~l~~~~~---~~~~v~~~d~~~~~~~~a~~~~~~-~~-~-   79 (139)
                      |-.+.....+.+.+.+ -.+..+||++|||+|.-.    ..+.+...   .+.+++|.|+++.+++.|++..-. .. + 
T Consensus         6 FRd~~~f~~L~~~~~~-~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~   84 (193)
T d1af7a2           6 FREAHHFPILAEHARR-RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKT   84 (193)
T ss_dssp             TTTTTHHHHHHHHHHH-SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTT
T ss_pred             cCCcHHHHHHHHHHhc-cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhh
Confidence            3344444555555543 234459999999999633    33343332   234799999999999999865422 10 0 


Q ss_pred             -------ccc-----cC-----------CcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccce-----eeeee
Q psy5757          80 -------RLL-----TD-----------GHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPV-----CINYT  131 (139)
Q Consensus        80 -------~~~-----~~-----------~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~-----~~~~~  131 (139)
                             ..+     ..           ..+++...+..+.     ...+...||+|+|..+++.+..+.     ...+.
T Consensus        85 ~~~~~~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~  159 (193)
T d1af7a2          85 LSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEK-----QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVP  159 (193)
T ss_dssp             SCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCS-----SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGG
T ss_pred             hhHHHHhhceeecCCCccceeehHHHHHHHHHHhhhhcccc-----ccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHH
Confidence                   000     00           1122222221110     112346799999999999988763     44577


Q ss_pred             eccCCCC
Q psy5757         132 ATMPEGS  138 (139)
Q Consensus       132 ~~~p~g~  138 (139)
                      .++|+|-
T Consensus       160 ~L~pGG~  166 (193)
T d1af7a2         160 LLKPDGL  166 (193)
T ss_dssp             GEEEEEE
T ss_pred             HhCCCcE
Confidence            7888773

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=5.2e-06  Score=55.01  Aligned_cols=78  Identities=10%  Similarity=0.178  Sum_probs=59.3

Q ss_pred             cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh--HHHhh
Q psy5757          26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI--ETVEL  103 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~  103 (139)
                      .++++.+|||+||+.|+++..+.+.....+.++++|+.+-         ..       .+++.++.+|+.+..  .....
T Consensus        19 l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~~-------i~~~~~~~~d~~~~~~~~~~~~   82 (180)
T d1ej0a_          19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DP-------IVGVDFLQGDFRDELVMKALLE   82 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CC-------CTTEEEEESCTTSHHHHHHHHH
T ss_pred             ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------cc-------cCCceEeecccccchhhhhhhh
Confidence            3688999999999999999999998877789999998751         11       378899999987522  12222


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      .....++|+|+|..+.
T Consensus        83 ~~~~~~~DlVlSD~ap   98 (180)
T d1ej0a_          83 RVGDSKVQVVMSDMAP   98 (180)
T ss_dssp             HHTTCCEEEEEECCCC
T ss_pred             hccCcceeEEEecccc
Confidence            3344679999998873

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.29  E-value=1.8e-06  Score=60.06  Aligned_cols=82  Identities=10%  Similarity=0.105  Sum_probs=62.5

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc---cCCcEEEEEccchhhhHHHhhhcc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL---TDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~---~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      .+|||..||.|..+..++....   +|+++|.++.+....++.+.+ ......   ...+++++++|..+.+.+     .
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~---~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~-----~  161 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-----I  161 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT-----C
T ss_pred             CEEEECCCcccHHHHHHHhCCC---EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhc-----c
Confidence            4899999999999999999874   899999999988887777655 210000   024899999997775542     2


Q ss_pred             CCceeEEecCcccc
Q psy5757         107 FDRYDFLPHAPAES  120 (139)
Q Consensus       107 ~~~~D~vi~~~~~~  120 (139)
                      .+.||+|+..|-|.
T Consensus       162 ~~~~DvIYlDPMFp  175 (250)
T d2oyra1         162 TPRPQVVYLDPMFP  175 (250)
T ss_dssp             SSCCSEEEECCCCC
T ss_pred             CCCCCEEEECCCCc
Confidence            35699999999764

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.27  E-value=1.5e-07  Score=65.44  Aligned_cols=89  Identities=15%  Similarity=0.072  Sum_probs=63.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ....+|||+|||+|..+..++++. |+.+++..|..+. ++.+      ..     .++++++.+|+.+.       .|.
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-i~~~------~~-----~~r~~~~~~d~~~~-------~P~  139 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-IEDA------PS-----YPGVEHVGGDMFVS-------IPK  139 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-TTTC------CC-----CTTEEEEECCTTTC-------CCC
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-hhhc------cc-----CCceEEeccccccc-------CCC
Confidence            345789999999999999999999 6889999998753 2111      11     37899999996542       122


Q ss_pred             CceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757         108 DRYDFLPHAPAESWMNIPV-----CINYTATMPEGS  138 (139)
Q Consensus       108 ~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~  138 (139)
                        .|+++....+|...+..     ...+++.+|+|.
T Consensus       140 --ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~  173 (243)
T d1kyza2         140 --ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGK  173 (243)
T ss_dssp             --CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSC
T ss_pred             --cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCce
Confidence              46677778888776543     334777777775

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.21  E-value=6.4e-06  Score=56.92  Aligned_cols=79  Identities=10%  Similarity=0.088  Sum_probs=63.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh-cc
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM-MK  106 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~  106 (139)
                      ...+++|+|+|.|..+..++-.. |+.+++-+|.+..-+...+..... ++      .|+++++..+.+    +... ..
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L------~n~~i~~~R~E~----~~~~~~~  138 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQL------ENTTFCHDRAET----FGQRKDV  138 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTC------SSEEEEESCHHH----HTTCTTT
T ss_pred             CCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCC------CCcEEEeehhhh----ccccccc
Confidence            56799999999999999999877 577999999999999998888877 55      899999987443    2111 12


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      .++||+|++...
T Consensus       139 ~~~~D~v~sRAv  150 (239)
T d1xdza_         139 RESYDIVTARAV  150 (239)
T ss_dssp             TTCEEEEEEECC
T ss_pred             cccceEEEEhhh
Confidence            357999998876

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.09  E-value=1.7e-05  Score=58.21  Aligned_cols=104  Identities=11%  Similarity=0.032  Sum_probs=70.7

Q ss_pred             cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccc-------
Q psy5757           9 AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNAR-------   80 (139)
Q Consensus         9 ~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~-------   80 (139)
                      ++.+.....+-+..+.-...++.+|||..||||..++..+...+ ..+|++.|+|+.+++.++++++. +...       
T Consensus        25 FYNp~q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~  103 (375)
T d2dula1          25 FYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGR  103 (375)
T ss_dssp             CCCGGGHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSE
T ss_pred             ccCHHHhhhhHHHHHHHHHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCcccccccccc
Confidence            44444555554443322234678999999999999998888764 34899999999999999999987 3210       


Q ss_pred             --cccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcc
Q psy5757          81 --LLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        81 --~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                        .....++.+.+.|+...+.     ...+.||+|...|-
T Consensus       104 ~~~~~~~~~~~~~~Da~~~~~-----~~~~~fDvIDiDPf  138 (375)
T d2dula1         104 AILKGEKTIVINHDDANRLMA-----ERHRYFHFIDLDPF  138 (375)
T ss_dssp             EEEESSSEEEEEESCHHHHHH-----HSTTCEEEEEECCS
T ss_pred             ccccccceeEeehhhhhhhhH-----hhcCcCCcccCCCC
Confidence              0122356777778654322     12456999988873

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=3e-05  Score=54.71  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=62.5

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      .+++.+|||++++.|+-+..++.... .+.++++|+++.-+...++++++ +.      .++.....|...  ..   ..
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~------~~~~~~~~~~~~--~~---~~  167 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGM------KATVKQGDGRYP--SQ---WC  167 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTC------CCEEEECCTTCT--HH---HH
T ss_pred             ccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcccc------cceeeecccccc--ch---hc
Confidence            57889999999999999999998774 57999999999999999999998 54      566555555322  11   11


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ....||.|+..++
T Consensus       168 ~~~~fd~IL~DaP  180 (284)
T d1sqga2         168 GEQQFDRILLDAP  180 (284)
T ss_dssp             TTCCEEEEEEECC
T ss_pred             ccccccEEEEecc
Confidence            2357999988776

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.90  E-value=3.1e-05  Score=52.89  Aligned_cols=56  Identities=23%  Similarity=0.197  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH
Q psy5757          14 SAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL   75 (139)
Q Consensus        14 ~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~   75 (139)
                      ..+.+++....   .+|..|||.-||+|.++.+..+...   +.+|+|++++.++.|++++.
T Consensus       200 ~L~~~lI~~~s---~~gd~VlDpF~GSGTT~~aa~~~~R---~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         200 DLIERIIRASS---NPNDLVLDCFMGSGTTAIVAKKLGR---NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHC---CTTCEEEESSCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhC---CCCCEEEECCCCchHHHHHHHHcCC---eEEEEeCCHHHHHHHHHHHc
Confidence            34555555554   7889999999999999988888775   99999999999999999874

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.89  E-value=2.9e-06  Score=58.51  Aligned_cols=94  Identities=16%  Similarity=0.109  Sum_probs=58.4

Q ss_pred             cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHc---CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcE
Q psy5757          11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELM---NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHI   87 (139)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~---~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i   87 (139)
                      ..|.-+..+.+.+.. .+ .+.|||+|++.|+.+..++...   ++.++++++|+++......     ..     ..+++
T Consensus        64 k~p~d~~~~~eli~~-~K-Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----~~-----~~~~I  131 (232)
T d2bm8a1          64 KDPDTQAVYHDMLWE-LR-PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----AS-----DMENI  131 (232)
T ss_dssp             SCHHHHHHHHHHHHH-HC-CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----GG-----GCTTE
T ss_pred             cCHHHHHHHHHHHHH-hC-CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----hc-----cccce
Confidence            345445555555542 34 4799999999998887776543   4578999999986432211     11     14789


Q ss_pred             EEEEccchhhhHHHhhhccCCceeEEecCcc
Q psy5757          88 KFVALGMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        88 ~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      +++.+|..+ ...+ .......+|+|+....
T Consensus       132 ~~i~gDs~~-~~~~-~~l~~~~~dlIfID~~  160 (232)
T d2bm8a1         132 TLHQGDCSD-LTTF-EHLREMAHPLIFIDNA  160 (232)
T ss_dssp             EEEECCSSC-SGGG-GGGSSSCSSEEEEESS
T ss_pred             eeeeccccc-HHHH-HHHHhcCCCEEEEcCC
Confidence            999998654 2211 1222335677776654

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.78  E-value=3.4e-05  Score=54.21  Aligned_cols=59  Identities=17%  Similarity=0.184  Sum_probs=49.9

Q ss_pred             ChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          12 GISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      +...+.+++....   .++..|||..||+|.++.+..+...   +.+|+|++++.++.|++++..
T Consensus       236 P~~L~~rlI~~~s---~~gdiVlDpF~GSGTT~~AA~~lgR---~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         236 PAKLPEFFIRMLT---EPDDLVVDIFGGSNTTGLVAERESR---KWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CTHHHHHHHHHHC---CTTCEEEETTCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHGGGSC
T ss_pred             chHHHHHhhhhcc---cCCCEEEecCCCCcHHHHHHHHcCC---cEEEEeCCHHHHHHHHHHHHh
Confidence            4455677776665   7889999999999999998888765   999999999999999988755

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.69  E-value=9.8e-05  Score=50.96  Aligned_cols=56  Identities=16%  Similarity=0.194  Sum_probs=47.7

Q ss_pred             HHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          15 AILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        15 ~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      .+.++++...   .++..|||.-||+|..+.+..+...   +.+|+|++++..+.|++++..
T Consensus       196 L~~~~I~~~s---~~gdiVLDpF~GSGTT~~Aa~~lgR---~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         196 VIERLVRALS---HPGSTVLDFFAGSGVTARVAIQEGR---NSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             HHHHHHHHHS---CTTCEEEETTCTTCHHHHHHHHHTC---EEEEEESSTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhc---CCCCEEEecCCCCcHHHHHHHHhCC---eEEEEeCCHHHHHHHHHHHHH
Confidence            4555555553   7889999999999999988888775   999999999999999999876

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.17  E-value=6e-05  Score=52.20  Aligned_cols=90  Identities=9%  Similarity=0.067  Sum_probs=59.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcC---C------------------------------------CceEEEEeCCHHHHH
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMN---S------------------------------------TGQVIGIEHVPQLVN   68 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~---~------------------------------------~~~v~~~d~~~~~~~   68 (139)
                      ..+..++|..||||.+....+....   |                                    ...+++.|+++.+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            4455799999999998887765321   0                                    124567777887777


Q ss_pred             HHH---HHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757          69 SSI---QNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN  123 (139)
Q Consensus        69 ~a~---~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~  123 (139)
                      .|+   +++.. ++     ...+++...|+.+..+ .....+....++|++||+....-
T Consensus       129 ~A~~~r~n~~~Agl-----~~~i~i~~~d~f~~~~-~~~~~~~~~~GlIVtNPPYGERl  181 (249)
T d1o9ga_         129 AARRLRERLTAEGG-----ALPCAIRTADVFDPRA-LSAVLAGSAPDVVLTDLPYGERT  181 (249)
T ss_dssp             HHHHHHHHHHHTTS-----SCCEEEEECCTTCGGG-HHHHHTTCCCSEEEEECCGGGSS
T ss_pred             HHHHHHHHHHHcCC-----CceeeeeecchhccCc-chhccCCCCCCEEEeCCCccccc
Confidence            774   46666 55     4678888898765222 11122345679999999966543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.69  E-value=0.0044  Score=43.04  Aligned_cols=72  Identities=17%  Similarity=0.105  Sum_probs=51.4

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCce
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRY  110 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~  110 (139)
                      ++|+|+-||-|+++..+-+..- + .+.++|+++.+.+..+.+.          + -+++.+|+.+ +.    ......+
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~-~-~~~a~e~d~~a~~~~~~N~----------~-~~~~~~Di~~-~~----~~~~~~~   62 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGF-R-IICANEYDKSIWKTYESNH----------S-AKLIKGDISK-IS----SDEFPKC   62 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTC-E-EEEEEECCHHHHHHHHHHC----------C-SEEEESCTTT-SC----GGGSCCC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCC-E-EEEEEeCCHHHHHHHHHHC----------C-CCCccCChhh-CC----HhHcccc
Confidence            4799999999999998877653 2 5679999998777666654          2 2356788655 21    1123468


Q ss_pred             eEEecCcccc
Q psy5757         111 DFLPHAPAES  120 (139)
Q Consensus       111 D~vi~~~~~~  120 (139)
                      |+++..++.+
T Consensus        63 dll~~g~PCq   72 (324)
T d1dcta_          63 DGIIGGPPCQ   72 (324)
T ss_dssp             SEEEECCCCT
T ss_pred             cEEeeccccc
Confidence            9999888744

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0022  Score=45.12  Aligned_cols=75  Identities=20%  Similarity=0.177  Sum_probs=51.0

Q ss_pred             CCeEEEEcccCChhHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh-HHHhhhccC
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMNSTG-QVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI-ETVELMMKF  107 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~~~~-~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~~  107 (139)
                      .++++|+.||-|+++..+-+..- .. .+.++|+++.+++..+.+.          ++..++.+|+.+.- ..+    +.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~-~~~~~~a~E~~~~a~~~~~~n~----------~~~~~~~~di~~~~~~~~----~~   66 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCI-PAQVVAAIDVNTVANEVYKYNF----------PHTQLLAKTIEGITLEEF----DR   66 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTC-SEEEEEEECCCHHHHHHHHHHC----------TTSCEECSCGGGCCHHHH----HH
T ss_pred             CCEEEEcCcCccHHHHHHHHcCC-CCeEEEEEECCHHHHHHHHHHC----------CCCCcccCchhhCCHhHc----CC
Confidence            46899999999999988866542 22 4779999998888776664          34456667765421 122    11


Q ss_pred             CceeEEecCccc
Q psy5757         108 DRYDFLPHAPAE  119 (139)
Q Consensus       108 ~~~D~vi~~~~~  119 (139)
                      ..+|+++..++.
T Consensus        67 ~~~Dll~ggpPC   78 (343)
T d1g55a_          67 LSFDMILMSPPC   78 (343)
T ss_dssp             HCCSEEEECCC-
T ss_pred             CCccEEEeeccc
Confidence            258999888873

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.43  E-value=0.0031  Score=44.23  Aligned_cols=74  Identities=9%  Similarity=-0.066  Sum_probs=52.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      ..+++++|+.||-|+++..+-+..- + .+.++|+++.+++..+.+...            ..++|+.+ +.   .. ..
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~-~-~v~a~e~d~~a~~~~~~N~~~------------~~~~Di~~-~~---~~-~~   69 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGA-E-CVYSNEWDKYAQEVYEMNFGE------------KPEGDITQ-VN---EK-TI   69 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTC-E-EEEEECCCHHHHHHHHHHHSC------------CCBSCGGG-SC---GG-GS
T ss_pred             CCCCeEEEECccccHHHHHHHHCCC-e-EEEEEeCCHHHHHHHHHHCCC------------CCcCchhc-Cc---hh-hc
Confidence            3678999999999999999877663 2 567899999988888777633            12467554 21   11 23


Q ss_pred             CceeEEecCcccc
Q psy5757         108 DRYDFLPHAPAES  120 (139)
Q Consensus       108 ~~~D~vi~~~~~~  120 (139)
                      ..+|+++..++.+
T Consensus        70 ~~~Dll~ggpPCq   82 (327)
T d2c7pa1          70 PDHDILCAGFPCQ   82 (327)
T ss_dssp             CCCSEEEEECCCT
T ss_pred             ceeeeeecccccc
Confidence            4589998888743

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.40  E-value=0.0083  Score=38.63  Aligned_cols=47  Identities=19%  Similarity=0.239  Sum_probs=37.6

Q ss_pred             cCCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        26 ~~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      .++++.+||-+|+| .|.....+++..+.. +|+++|.+++.++.+++.
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~-~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAE-NVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTBS-EEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCccchhheecccccccc-cccccccccccccccccc
Confidence            36789999999987 467777888877532 899999999998888653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.39  E-value=0.029  Score=35.85  Aligned_cols=46  Identities=26%  Similarity=0.428  Sum_probs=37.8

Q ss_pred             cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++.+|+-+|||. |..+..+++..+. .+++++|.+++.++.+++
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHHHHHh
Confidence            478999999999985 7788888887753 279999999988888865

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.12  E-value=0.073  Score=34.58  Aligned_cols=47  Identities=19%  Similarity=0.244  Sum_probs=37.8

Q ss_pred             cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      .++++.+||-+|||. |..+..+++..+ -.+++++|.+++.++.|++.
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhc
Confidence            378999999999997 556677777664 34899999999988888764

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=96.07  E-value=0.014  Score=41.82  Aligned_cols=47  Identities=19%  Similarity=0.220  Sum_probs=34.8

Q ss_pred             CCeEEEEcccCChhHHHHHHHcC------CCceEEEEeCCHHHHHHHHHHHHh
Q psy5757          30 NSKVLEIGSGSGYLTNMISELMN------STGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~~------~~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      .-.|+|+|+|+|.++.-+.+...      ...+++-+|.|+.+.+.-++.+..
T Consensus        80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~  132 (365)
T d1zkda1          80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  132 (365)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence            34799999999999988877653      234688999998766655555543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.05  E-value=0.021  Score=34.75  Aligned_cols=71  Identities=11%  Similarity=0.133  Sum_probs=46.0

Q ss_pred             CeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      |+|+-+|  .|..+..+++.+.. .-.++.+|.+++.++.+.+.+           +..++.+|..+ ...+ .....+.
T Consensus         1 M~IvI~G--~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----------~~~vi~Gd~~~-~~~l-~~~~i~~   65 (132)
T d1lssa_           1 MYIIIAG--IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----------DALVINGDCTK-IKTL-EDAGIED   65 (132)
T ss_dssp             CEEEEEC--CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------SSEEEESCTTS-HHHH-HHTTTTT
T ss_pred             CEEEEEC--CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----------hhhhccCcccc-hhhh-hhcChhh
Confidence            4566655  58888888876632 238999999999888765532           45678888776 2222 2334456


Q ss_pred             eeEEecC
Q psy5757         110 YDFLPHA  116 (139)
Q Consensus       110 ~D~vi~~  116 (139)
                      .|.+++.
T Consensus        66 a~~vv~~   72 (132)
T d1lssa_          66 ADMYIAV   72 (132)
T ss_dssp             CSEEEEC
T ss_pred             hhhhccc
Confidence            6777653

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=95.83  E-value=0.0032  Score=43.23  Aligned_cols=35  Identities=26%  Similarity=0.465  Sum_probs=28.9

Q ss_pred             CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeC
Q psy5757          27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEH   62 (139)
Q Consensus        27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~   62 (139)
                      ++++.+|+|+|||.|+++..++...+ -..+.|+++
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~i   98 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTK   98 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECC
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhcC-CCceeEEEe
Confidence            57888999999999999999998752 336777776

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.087  Score=33.25  Aligned_cols=45  Identities=18%  Similarity=0.261  Sum_probs=35.4

Q ss_pred             cCCCCCeEEEEcc--cCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGS--GSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++++||-.|+  |.|..+..+++..+.  ++++++.+++..+.+++
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~--~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYGL--KILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEEeccccccccccccccccCc--ccccccccccccccccc
Confidence            4789999999996  366777888888754  89999989877776654

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=95.63  E-value=0.019  Score=41.74  Aligned_cols=49  Identities=12%  Similarity=0.088  Sum_probs=41.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILH   76 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~   76 (139)
                      .++..++|+||-.|..+..++...+. ..+++++|.++...+..+++++.
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~  260 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  260 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            46679999999999999888876642 35899999999999999998875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.46  E-value=0.027  Score=35.61  Aligned_cols=46  Identities=20%  Similarity=0.253  Sum_probs=37.8

Q ss_pred             cCCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        26 ~~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      .++++.+|+-+|+| .|..+..+++..+.  +++++|.+++.++.+++.
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHH
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccc--cccccccchhHHHHhhcc
Confidence            47899999999988 66777788877754  999999999988887663

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.38  E-value=0.091  Score=33.24  Aligned_cols=47  Identities=15%  Similarity=0.275  Sum_probs=35.6

Q ss_pred             cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      .++++.+|+-+|||. |..+..+++..+. .+++..|.++..++.+++.
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~   72 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQL   72 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHc
Confidence            378999999999873 4466677776653 3788999999888888763

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.098  Score=32.89  Aligned_cols=46  Identities=22%  Similarity=0.341  Sum_probs=35.8

Q ss_pred             CCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          27 LNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        27 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      ++++.+|+-+|+|. |..+..+++..+. .+++++|.++..++.|++.
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHh
Confidence            68899999999974 4566666666643 3899999999999988764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.085  Score=35.67  Aligned_cols=87  Identities=9%  Similarity=0.097  Sum_probs=56.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVE-  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~-  102 (139)
                      .+++.+|--|+++| .+..+++.+ ....+|+..+.+++.++.+.+.++. +.     ..++..+..|+.+.  ...+. 
T Consensus         8 lk~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-----~~~~~~~~~Dls~~~~v~~~v~   81 (257)
T d1xg5a_           8 WRDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY-----PGTLIPYRCDLSNEEDILSMFS   81 (257)
T ss_dssp             GTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----SSEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----CceEEEEEccCCCHHHHHHHHH
Confidence            35677888886655 444444444 2244999999999999988887776 32     24788888888761  22211 


Q ss_pred             -hhccCCceeEEecCcccc
Q psy5757         103 -LMMKFDRYDFLPHAPAES  120 (139)
Q Consensus       103 -~~~~~~~~D~vi~~~~~~  120 (139)
                       ....++.+|++|.|....
T Consensus        82 ~~~~~~g~iD~lVnnAg~~  100 (257)
T d1xg5a_          82 AIRSQHSGVDICINNAGLA  100 (257)
T ss_dssp             HHHHHHCCCSEEEECCCCC
T ss_pred             HHHHhcCCCCEEEeccccc
Confidence             112356799999887643

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.12  Score=34.64  Aligned_cols=88  Identities=9%  Similarity=0.100  Sum_probs=56.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      -.|+.+|--|+++| .+..+++.+ ....+|+..+.+++.++...+.+...      ..++..+..|+.+.  ...+.. 
T Consensus         5 l~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~------~~~~~~~~~Dvs~~~~v~~~~~~   77 (244)
T d1yb1a_           5 VTGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL------GAKVHTFVVDCSNREDIYSSAKK   77 (244)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeeCCCHHHHHHHHHH
Confidence            35667777676665 344444433 12349999999999998888877661      15788899998872  111111 


Q ss_pred             -hccCCceeEEecCcccccc
Q psy5757         104 -MMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~~~~  122 (139)
                       ....+.+|+++.|....+.
T Consensus        78 i~~~~g~idilinnag~~~~   97 (244)
T d1yb1a_          78 VKAEIGDVSILVNNAGVVYT   97 (244)
T ss_dssp             HHHHTCCCSEEEECCCCCCC
T ss_pred             HHHHcCCCceeEeecccccc
Confidence             1246679999988875543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.14  E-value=0.12  Score=34.94  Aligned_cols=86  Identities=16%  Similarity=0.202  Sum_probs=54.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVE--  102 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~--  102 (139)
                      +++.+|--|+++| .+..+++.+ ...++|+..+.+++.++.+.+.+.. ..     ..++..+..|+.+.  ..++.  
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~-----~~~~~~~~~Dvt~~~~v~~~~~~   76 (258)
T d1iy8a_           3 TDRVVLITGGGSG-LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP-----DAEVLTTVADVSDEAQVEAYVTA   76 (258)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT-----TCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC-----CCeEEEEeccCCCHHHHHHHHHH
Confidence            4567777776555 444444443 1234999999999988887776654 21     24778888888761  22221  


Q ss_pred             hhccCCceeEEecCcccc
Q psy5757         103 LMMKFDRYDFLPHAPAES  120 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~~  120 (139)
                      ....++.+|+++.|.-..
T Consensus        77 ~~~~~G~iDiLVnnAG~~   94 (258)
T d1iy8a_          77 TTERFGRIDGFFNNAGIE   94 (258)
T ss_dssp             HHHHHSCCSEEEECCCCC
T ss_pred             HHHHhCCCCEEEECCccc
Confidence            112356799999887543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.08  E-value=0.085  Score=35.80  Aligned_cols=84  Identities=14%  Similarity=0.170  Sum_probs=54.8

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .+++.+|--|+++| .+..+++.+ ...++|+.+|.+++.++.+.+.+..       ..++.++..|+.+.  +.++.. 
T Consensus         4 L~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-------~~~~~~~~~Dv~~~~~v~~~~~~   75 (268)
T d2bgka1           4 LQDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-------PDVISFVHCDVTKDEDVRNLVDT   75 (268)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-------CCceEEEEccCCCHHHHHHHHHH
Confidence            35678888886655 555555544 2245999999999888877776654       24577788888752  222211 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ...++++|+++.|.-.
T Consensus        76 ~~~~~g~iD~lVnnAG~   92 (268)
T d2bgka1          76 TIAKHGKLDIMFGNVGV   92 (268)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHcCCcceecccccc
Confidence             1235689999988753

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.15  Score=34.02  Aligned_cols=81  Identities=15%  Similarity=0.166  Sum_probs=52.6

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM  104 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~  104 (139)
                      .+|+.+|--|+++ +.+..+++.+ ...++|+.++.+++.++.+.+..          .++..++.|+.+.  ++++.  
T Consensus         5 L~GK~~lITGas~-GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~----------~~~~~~~~Dv~d~~~v~~~~--   71 (244)
T d1pr9a_           5 LAGRRVLVTGAGK-GIGRGTVQALHATGARVVAVSRTQADLDSLVREC----------PGIEPVCVDLGDWEATERAL--   71 (244)
T ss_dssp             CTTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHHH--
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc----------CCCeEEEEeCCCHHHHHHHH--
Confidence            4678888888665 4455555544 22349999999988777665443          4566777887762  22322  


Q ss_pred             ccCCceeEEecCccccc
Q psy5757         105 MKFDRYDFLPHAPAESW  121 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~  121 (139)
                      ...+++|+++.|.....
T Consensus        72 ~~~g~iDilVnnAg~~~   88 (244)
T d1pr9a_          72 GSVGPVDLLVNNAAVAL   88 (244)
T ss_dssp             TTCCCCCEEEECCCCCC
T ss_pred             HHhCCceEEEecccccc
Confidence            24678999998876443

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.90  E-value=0.15  Score=34.36  Aligned_cols=84  Identities=8%  Similarity=0.118  Sum_probs=54.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~  103 (139)
                      +++.+|--|+++| .+..+++.+ ...++|+.+|.+++.++.+.+.+...      ..++..+..|+.+.  .+++.  .
T Consensus         4 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~------g~~~~~~~~Dv~~~~~v~~~~~~~   76 (260)
T d1zema1           4 NGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREK------GVEARSYVCDVTSEEAVIGTVDSV   76 (260)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------TSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence            5677887775544 455555544 22348999999999999888877661      14678888888752  22221  1


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ...++.+|+++.|.-.
T Consensus        77 ~~~~g~iDilVnnaG~   92 (260)
T d1zema1          77 VRDFGKIDFLFNNAGY   92 (260)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCCCeehhhhcc
Confidence            1235689999988653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.83  E-value=0.23  Score=31.10  Aligned_cols=55  Identities=15%  Similarity=0.196  Sum_probs=38.3

Q ss_pred             HHHHHhcccCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          18 TYLSIIQPHLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        18 ~~~~~l~~~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      +.+......++++..||-+|+|. |..+..+++..+. .+++++|.+++.++.+++.
T Consensus        21 ~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2          21 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHT
T ss_pred             HHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhc
Confidence            34443332368899999999874 4455667766643 3889999999888877764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.73  E-value=0.084  Score=33.64  Aligned_cols=48  Identities=17%  Similarity=0.221  Sum_probs=37.7

Q ss_pred             cCCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI   74 (139)
Q Consensus        26 ~~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~   74 (139)
                      .++++..|+-+|+| .|..+..+++..+ -.+|+++|.+++.++.|++.=
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~G   74 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAVG   74 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHHT
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhcC
Confidence            37899999999998 4456666666664 248999999999999888763

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.70  E-value=0.068  Score=33.53  Aligned_cols=45  Identities=18%  Similarity=0.317  Sum_probs=37.4

Q ss_pred             CCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          27 LNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        27 ~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      ++++.+|+-+||| .|..+..+++..+  ++++++|.+++.++.|++.
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHHc
Confidence            6889999999988 5667777777765  4999999999998888774

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.65  E-value=0.16  Score=34.10  Aligned_cols=85  Identities=13%  Similarity=0.090  Sum_probs=53.7

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +++.+|--|+++| .+..+++.+ ...++|+..+.+++.++.+.+.+....     ..++..+..|+.+.  .+++..  
T Consensus         4 ~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~   77 (251)
T d1vl8a_           4 RGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY-----GVETMAFRCDVSNYEEVKKLLEAV   77 (251)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-----CCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-----CCcEEEEEccCCCHHHHHHHHHHH
Confidence            5677887776654 455555544 223499999999888887766654411     14677888888752  222211  


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ...++++|++|.|.-.
T Consensus        78 ~~~~g~iDiLVnnAG~   93 (251)
T d1vl8a_          78 KEKFGKLDTVVNAAGI   93 (251)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence            1235679999988754

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.16  Score=34.12  Aligned_cols=83  Identities=17%  Similarity=0.208  Sum_probs=52.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--  102 (139)
                      .+++.+|--|+++| .+..+++.+ ...++|+..|.+++.++...+..          .+..++..|+.+.  .+++.  
T Consensus         4 l~GK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~----------~~~~~~~~Dvs~~~~v~~~~~~   72 (250)
T d1ydea1           4 YAGKVVVVTGGGRG-IGAGIVRAFVNSGARVVICDKDESGGRALEQEL----------PGAVFILCDVTQEDDVKTLVSE   72 (250)
T ss_dssp             TTTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------TTEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----------CCCeEEEccCCCHHHHHHHHHH
Confidence            35778888776654 555555544 22359999999988777665543          4567888888761  22221  


Q ss_pred             hhccCCceeEEecCccccc
Q psy5757         103 LMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~~~  121 (139)
                      ....++++|+++.|.-.+.
T Consensus        73 ~~~~~g~iDilVnnAG~~~   91 (250)
T d1ydea1          73 TIRRFGRLDCVVNNAGHHP   91 (250)
T ss_dssp             HHHHHSCCCEEEECCCCCC
T ss_pred             HHHhcCCCCEEEecccccc
Confidence            1123567999999986443

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.11  Score=35.33  Aligned_cols=85  Identities=14%  Similarity=0.133  Sum_probs=58.3

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--hhHHHh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN--STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--RIETVE--  102 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~--~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~--  102 (139)
                      .|++|.=|.-|+++.+..+++.+-  ...+|+..+.+++.++.+.+.++...      .++.++..|+.+  ..+++.  
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dvs~~~sv~~~~~~   74 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG------LSPRFHQLDIDDLQSIRALRDF   74 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT------CCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEEecCCHHHHHHHHHH
Confidence            367887776677777777766542  13489999999999998888877611      467888888876  122221  


Q ss_pred             hhccCCceeEEecCccc
Q psy5757         103 LMMKFDRYDFLPHAPAE  119 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~  119 (139)
                      .....+++|++|.|.-.
T Consensus        75 ~~~~~g~iDiLVnNAGi   91 (275)
T d1wmaa1          75 LRKEYGGLDVLVNNAGI   91 (275)
T ss_dssp             HHHHHSSEEEEEECCCC
T ss_pred             HHHhcCCcEEEEEcCCc
Confidence            11235689999999864

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.54  E-value=0.061  Score=34.70  Aligned_cols=80  Identities=9%  Similarity=0.027  Sum_probs=47.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      -+++++|-.|++.| .+..+++.+ ...++|+.++.+++.++.+.+.+...       .++.+...|..+ ..++..  -
T Consensus        21 l~gK~vlItGasgG-IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~d~~~-~~~~~~--~   89 (191)
T d1luaa1          21 VKGKKAVVLAGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR-------FKVNVTAAETAD-DASRAE--A   89 (191)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-------HTCCCEEEECCS-HHHHHH--H
T ss_pred             CCCCEEEEECCCHH-HHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc-------cchhhhhhhccc-HHHHHH--H
Confidence            47789988876555 444444333 12349999999998888887776551       123334444333 222211  2


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      .+.+|++|.+..
T Consensus        90 ~~~iDilin~Ag  101 (191)
T d1luaa1          90 VKGAHFVFTAGA  101 (191)
T ss_dssp             TTTCSEEEECCC
T ss_pred             hcCcCeeeecCc
Confidence            456899998754

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.18  Score=33.80  Aligned_cols=87  Identities=10%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~  103 (139)
                      +|+.+|--|++ ++.+..+++.+ ...++|+.++.+++.++.+.+.+...    ....++.++..|+.+.  ++++.  .
T Consensus         2 ~GKvalITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~----~~~~~~~~~~~Dv~~~~~v~~~~~~~   76 (254)
T d2gdza1           2 NGKVALVTGAA-QGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ----FEPQKTLFIQCDVADQQQLRDTFRKV   76 (254)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT----SCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh----cCCCcEEEEEeecCCHHHHHHHHHHH
Confidence            45667776755 45566666654 22459999999999888877776541    0125788888898762  22221  1


Q ss_pred             hccCCceeEEecCcccc
Q psy5757         104 MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~~  120 (139)
                      ...++++|+++.|....
T Consensus        77 ~~~~G~iDilVnnAg~~   93 (254)
T d2gdza1          77 VDHFGRLDILVNNAGVN   93 (254)
T ss_dssp             HHHHSCCCEEEECCCCC
T ss_pred             HHHcCCcCeeccccccc
Confidence            12346799999887643

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.46  E-value=0.13  Score=34.55  Aligned_cols=85  Identities=8%  Similarity=0.026  Sum_probs=54.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .+++.+|--|+ +++.+..+++.+ ...++|+.++.+++.++.+.+.+..       ..++.++..|+.+.  ..++.. 
T Consensus         4 L~gK~alVTGa-s~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~   75 (251)
T d1zk4a1           4 LDGKVAIITGG-TLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-------PDQIQFFQHDSSDEDGWTKLFDA   75 (251)
T ss_dssp             TTTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-------CCcEEEEEccCCCHHHHHHHHHH
Confidence            35667776664 555555555554 2235999999999888877776644       35788888998762  222211 


Q ss_pred             -hccCCceeEEecCcccc
Q psy5757         104 -MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~~  120 (139)
                       ...++.+|+++.|....
T Consensus        76 ~~~~~G~iDiLVnnAg~~   93 (251)
T d1zk4a1          76 TEKAFGPVSTLVNNAGIA   93 (251)
T ss_dssp             HHHHHSSCCEEEECCCCC
T ss_pred             HHHHhCCceEEEeccccc
Confidence             12356799999887643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.36  E-value=0.14  Score=31.83  Aligned_cols=62  Identities=16%  Similarity=0.040  Sum_probs=43.1

Q ss_pred             ccccChHHHH-HHHHHhcccCCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757           8 AAIGGISAIL-TYLSIIQPHLNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus         8 ~~~~~~~~~~-~~~~~l~~~~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      +.++....+. +.++..  .++++++|+-+|+| .|..+..+++..+  ++++++|.+++.++.+++.
T Consensus         7 A~l~ca~~Ta~~al~~~--~~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2           7 APILCAGVTVYKGLKQT--NARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             GGGGTHHHHHHHHHHHH--TCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHh--CCCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhhcc
Confidence            3455444332 334444  36889999999987 4566777777765  4999999999888887653

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.35  E-value=0.39  Score=32.05  Aligned_cols=85  Identities=20%  Similarity=0.213  Sum_probs=57.6

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~  103 (139)
                      +++.+|--|+ +++.+..+++.+. ..++|+.++.+++.++.+.+.+...      ..++..+..|+.+.  ..++.  .
T Consensus         9 enKvalITGa-s~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~------g~~~~~~~~Dvt~~~~v~~~~~~~   81 (251)
T d2c07a1           9 ENKVALVTGA-GRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF------GYESSGYAGDVSKKEEISEVINKI   81 (251)
T ss_dssp             SSCEEEEEST-TSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence            5566666665 5567777777663 3459999999999988888877661      14678888998862  22211  1


Q ss_pred             hccCCceeEEecCcccc
Q psy5757         104 MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~~  120 (139)
                      ...++.+|+++.|....
T Consensus        82 ~~~~g~iDilvnnag~~   98 (251)
T d2c07a1          82 LTEHKNVDILVNNAGIT   98 (251)
T ss_dssp             HHHCSCCCEEEECCCCC
T ss_pred             HHhcCCceeeeeccccc
Confidence            22467899999887643

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.30  E-value=0.23  Score=33.32  Aligned_cols=80  Identities=13%  Similarity=0.110  Sum_probs=52.2

Q ss_pred             EEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--hhccCC
Q psy5757          34 LEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--LMMKFD  108 (139)
Q Consensus        34 LdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~~~~~~  108 (139)
                      |--| |+++.+..+++.+ ...++|+..+.+++.++.+.+.+...      ..++..+..|+.+.  +.++.  ....++
T Consensus         5 lITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~------g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (255)
T d1gega_           5 LVTG-AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA------GGHAVAVKVDVSDRDQVFAAVEQARKTLG   77 (255)
T ss_dssp             EEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             EEcC-CccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            4445 4555666666655 22459999999999988888777661      14678888898862  12211  122467


Q ss_pred             ceeEEecCcccc
Q psy5757         109 RYDFLPHAPAES  120 (139)
Q Consensus       109 ~~D~vi~~~~~~  120 (139)
                      ++|+++.|.-..
T Consensus        78 ~iDilVnnAG~~   89 (255)
T d1gega_          78 GFDVIVNNAGVA   89 (255)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CccEEEeccccc
Confidence            899999887543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.25  E-value=0.27  Score=31.28  Aligned_cols=73  Identities=18%  Similarity=0.125  Sum_probs=49.3

Q ss_pred             CCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      +..+++-+|+|. |..+...+..++  ++|+.+|.+++.++..+.....         ++++...+-.. +.+   .  .
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~~~l~~l~~~~~~---------~~~~~~~~~~~-l~~---~--~   93 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS---------RVELLYSNSAE-IET---A--V   93 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHH-HHH---H--H
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcHHHHHHHHHhhcc---------cceeehhhhhh-HHH---h--h
Confidence            356899999995 556777777775  4999999999988887766543         44555544221 221   1  2


Q ss_pred             CceeEEecCcc
Q psy5757         108 DRYDFLPHAPA  118 (139)
Q Consensus       108 ~~~D~vi~~~~  118 (139)
                      ...|+||..-.
T Consensus        94 ~~aDivI~aal  104 (168)
T d1pjca1          94 AEADLLIGAVL  104 (168)
T ss_dssp             HTCSEEEECCC
T ss_pred             ccCcEEEEeee
Confidence            34799987664

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.13  E-value=0.3  Score=32.72  Aligned_cols=82  Identities=10%  Similarity=0.094  Sum_probs=53.1

Q ss_pred             CCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--hh
Q psy5757          30 NSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--LM  104 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~~  104 (139)
                      ++.+|--| |+++.+..+++.+ ...++|+..+.+++.++.+.+.+...      ..++..+..|+.+.  ...+.  ..
T Consensus         2 gKValITG-as~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~------g~~~~~~~~Dvs~~~~v~~~~~~~~   74 (257)
T d2rhca1           2 SEVALVTG-ATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA------GVEADGRTCDVRSVPEIEALVAAVV   74 (257)
T ss_dssp             CCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeecCCHHHHHHHHHHHH
Confidence            34445555 4555566666655 22359999999999998888877661      14688888888762  22221  12


Q ss_pred             ccCCceeEEecCcc
Q psy5757         105 MKFDRYDFLPHAPA  118 (139)
Q Consensus       105 ~~~~~~D~vi~~~~  118 (139)
                      ..++++|++|.|.-
T Consensus        75 ~~~g~iDilVnnAG   88 (257)
T d2rhca1          75 ERYGPVDVLVNNAG   88 (257)
T ss_dssp             HHTCSCSEEEECCC
T ss_pred             HHhCCCCEEEeccc
Confidence            24678999998865

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.10  E-value=0.18  Score=34.23  Aligned_cols=85  Identities=15%  Similarity=0.212  Sum_probs=55.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVE--  102 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~--  102 (139)
                      +++.+|--|++ ++.+..+++.+ ...++|+..+.+++.++.+.+.+.. +.    ...++..+..|+.+.  ..++.  
T Consensus         4 ~gK~alVTGas-~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~----~~~~~~~~~~Dvs~~~~v~~~~~~   78 (272)
T d1xkqa_           4 SNKTVIITGSS-NGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV----SEKQVNSVVADVTTEDGQDQIINS   78 (272)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC----CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCcC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CCCceEEEEccCCCHHHHHHHHHH
Confidence            45677776654 55555555544 2234999999999999988888766 32    124688899998761  22221  


Q ss_pred             hhccCCceeEEecCcc
Q psy5757         103 LMMKFDRYDFLPHAPA  118 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~  118 (139)
                      ....++.+|+++.|.-
T Consensus        79 ~~~~~g~iDilvnnAG   94 (272)
T d1xkqa_          79 TLKQFGKIDVLVNNAG   94 (272)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHhCCceEEEeCCc
Confidence            1123567999998864

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.09  E-value=0.35  Score=30.05  Aligned_cols=46  Identities=20%  Similarity=0.426  Sum_probs=35.4

Q ss_pred             CCCCCeEEEEccc--CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          27 LNENSKVLEIGSG--SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        27 ~~~~~~iLdiG~G--~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      ++++.+|+-+|++  .|..+..+++..+ ..+|+++|.++...+.+++.
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHHc
Confidence            6889999999963  5566677777664 34899999999888887763

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.08  E-value=0.22  Score=33.25  Aligned_cols=79  Identities=16%  Similarity=0.153  Sum_probs=50.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM  104 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~  104 (139)
                      .+|+++|--|+++| .+..+++.+ ...++|+.++.+++.++.+.+..          .++..+..|+.+.  .++..  
T Consensus         3 l~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~----------~~~~~~~~Dv~~~~~v~~~~--   69 (242)
T d1cyda_           3 FSGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----------PGIEPVCVDLGDWDATEKAL--   69 (242)
T ss_dssp             CTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHHH--
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----------CCCeEEEEeCCCHHHHHHHH--
Confidence            36788887776554 555555554 22359999999987766555442          4566777887762  22222  


Q ss_pred             ccCCceeEEecCccc
Q psy5757         105 MKFDRYDFLPHAPAE  119 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~  119 (139)
                      ..++++|+++.|...
T Consensus        70 ~~~g~iDilVnnAg~   84 (242)
T d1cyda_          70 GGIGPVDLLVNNAAL   84 (242)
T ss_dssp             TTCCCCSEEEECCCC
T ss_pred             HHcCCCeEEEECCcc
Confidence            246789999988753

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.96  E-value=0.21  Score=33.91  Aligned_cols=85  Identities=18%  Similarity=0.242  Sum_probs=55.4

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      +++.+|--|+++| .+..+++.+ ...++|+..+.+++.++.+.+.+.. +.    ...++..+..|+.+.  ++++.. 
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~   77 (274)
T d1xhla_           3 SGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV----PAEKINAVVADVTEASGQDDIINT   77 (274)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcceEEEEeeCCCHHHHHHHHHH
Confidence            5677777776554 555555544 2234999999999988888887765 32    124788899998762  222211 


Q ss_pred             -hccCCceeEEecCcc
Q psy5757         104 -MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~  118 (139)
                       ...++++|+++.|.-
T Consensus        78 ~~~~~G~iDilVnnAG   93 (274)
T d1xhla_          78 TLAKFGKIDILVNNAG   93 (274)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCceEEEeecc
Confidence             123567999998864

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.91  E-value=0.37  Score=30.11  Aligned_cols=46  Identities=13%  Similarity=0.265  Sum_probs=36.7

Q ss_pred             cCCCCCeEEEEccc--CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSG--SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        26 ~~~~~~~iLdiG~G--~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      .++++++||-.|++  .|.....+++..+.  ++++++.+++..+.+++.
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~l   72 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKA   72 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHH
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhc
Confidence            36889999988655  46788888888754  999999999988887653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.88  E-value=0.057  Score=34.47  Aligned_cols=47  Identities=13%  Similarity=0.174  Sum_probs=38.9

Q ss_pred             cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      .++++.+|+-+|||. |..+..+++..+. ..++..|.+++.++.+++.
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHh
Confidence            378999999999986 7888888888763 3899999999988877774

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.88  E-value=0.36  Score=32.75  Aligned_cols=86  Identities=9%  Similarity=0.148  Sum_probs=55.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVE-  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~-  102 (139)
                      .+|+.+|--|+.+ +.+..+++.+- ..++|+..+.++..++.+.+.+.. .-      .++.++..|+.+.  ...+. 
T Consensus        23 l~gK~alITGas~-GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g------~~~~~~~~D~~~~~~v~~~~~   95 (294)
T d1w6ua_          23 FQGKVAFITGGGT-GLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG------NKVHAIQCDVRDPDMVQNTVS   95 (294)
T ss_dssp             TTTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS------SCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcC------CceEEEEecccChHHHHHHhh
Confidence            3557777777654 56666665542 234999999999888887766654 22      5677888887751  11111 


Q ss_pred             -hhccCCceeEEecCcccc
Q psy5757         103 -LMMKFDRYDFLPHAPAES  120 (139)
Q Consensus       103 -~~~~~~~~D~vi~~~~~~  120 (139)
                       .....+.+|+++.|....
T Consensus        96 ~~~~~~g~iDilvnnAg~~  114 (294)
T d1w6ua_          96 ELIKVAGHPNIVINNAAGN  114 (294)
T ss_dssp             HHHHHTCSCSEEEECCCCC
T ss_pred             hhhhhccccchhhhhhhhc
Confidence             122456799999887643

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.70  E-value=0.36  Score=30.21  Aligned_cols=47  Identities=13%  Similarity=0.161  Sum_probs=35.8

Q ss_pred             cCCCCCeEEEEcccCC-hhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGSG-YLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G-~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      .++++..||-+|+|.+ .....+++... ..+|+++|.+++..+.+++.
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHh
Confidence            3789999999998744 45555556554 34999999999988888665

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.70  E-value=0.29  Score=32.68  Aligned_cols=83  Identities=11%  Similarity=0.091  Sum_probs=52.2

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .+++.+|--|+++| .+..+++.+ ...++|+..+.+++.++.+.+.+.         .+..++..|+.+.  .+++.. 
T Consensus         4 L~gK~alITGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~   73 (244)
T d1nffa_           4 LTGKVALVSGGARG-MGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA---------DAARYVHLDVTQPAQWKAAVDT   73 (244)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG---------GGEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh---------CcceEEEeecCCHHHHHHHHHH
Confidence            35677777776655 455555544 223499999999987777666543         3567788887752  222211 


Q ss_pred             -hccCCceeEEecCcccc
Q psy5757         104 -MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~~  120 (139)
                       ...++.+|+++.|.-..
T Consensus        74 ~~~~~g~idilinnAG~~   91 (244)
T d1nffa_          74 AVTAFGGLHVLVNNAGIL   91 (244)
T ss_dssp             HHHHHSCCCEEEECCCCC
T ss_pred             HHHHhCCCeEEEECCccc
Confidence             11346799999888643

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.69  E-value=0.3  Score=32.78  Aligned_cols=85  Identities=11%  Similarity=0.148  Sum_probs=56.7

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--  102 (139)
                      .+++.+|--| |+++.+..+++.+ ...++|+..+.+++.++.+.+.+...      -.++.++..|+.+.  ..++.  
T Consensus         9 L~gK~alITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~------g~~~~~~~~Dvs~~~~~~~~~~~   81 (255)
T d1fmca_           9 LDGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------GGQAFACRCDITSEQELSALADF   81 (255)
T ss_dssp             CTTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc------CCcEEEEEccCCCHHHHHHHHHH
Confidence            4667777555 5566667676665 23469999999999888888777661      14678888898762  22221  


Q ss_pred             hhccCCceeEEecCccc
Q psy5757         103 LMMKFDRYDFLPHAPAE  119 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~  119 (139)
                      ....++.+|+++.|.-.
T Consensus        82 ~~~~~g~iDilvnnAG~   98 (255)
T d1fmca_          82 AISKLGKVDILVNNAGG   98 (255)
T ss_dssp             HHHHHSSCCEEEECCCC
T ss_pred             HHHHcCCCCEeeeCCcC
Confidence            11235679999988764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.14  Score=31.56  Aligned_cols=74  Identities=12%  Similarity=0.071  Sum_probs=45.3

Q ss_pred             eEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCce
Q psy5757          32 KVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRY  110 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~  110 (139)
                      +++-  ||.|..+..+++.+. ..-.++.+|.+++......+....        .++.++.||..+ ...+ ..+..++.
T Consensus         5 HiII--~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~--------~~~~vi~Gd~~d-~~~L-~~a~i~~a   72 (153)
T d1id1a_           5 HFIV--CGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG--------DNADVIPGDSND-SSVL-KKAGIDRC   72 (153)
T ss_dssp             CEEE--ECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC--------TTCEEEESCTTS-HHHH-HHHTTTTC
T ss_pred             EEEE--ECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc--------CCcEEEEccCcc-hHHH-HHhccccC
Confidence            4555  455677777777652 134889999998765444333333        578899999876 2222 23345667


Q ss_pred             eEEecCc
Q psy5757         111 DFLPHAP  117 (139)
Q Consensus       111 D~vi~~~  117 (139)
                      |.++...
T Consensus        73 ~~vi~~~   79 (153)
T d1id1a_          73 RAILALS   79 (153)
T ss_dssp             SEEEECS
T ss_pred             CEEEEcc
Confidence            7776544

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.57  E-value=0.26  Score=33.13  Aligned_cols=85  Identities=14%  Similarity=0.186  Sum_probs=54.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      +++.+|--|++ ++.+..+++.+ ...++|+..+.+++.++.+.+.+.. +.    ...++.++..|+.+.  ..++.. 
T Consensus         4 ~gKvalVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~----~~~~~~~~~~Dvt~~~~v~~~~~~   78 (264)
T d1spxa_           4 AEKVAIITGSS-NGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV----SEQNVNSVVADVTTDAGQDEILST   78 (264)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCcC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CcCceEEEEccCCCHHHHHHHHHH
Confidence            45666665554 55555565554 2245999999999999888887765 32    124688999998751  222211 


Q ss_pred             -hccCCceeEEecCcc
Q psy5757         104 -MMKFDRYDFLPHAPA  118 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~  118 (139)
                       ...++++|+++.|.-
T Consensus        79 ~~~~~g~iDilvnnAG   94 (264)
T d1spxa_          79 TLGKFGKLDILVNNAG   94 (264)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHhCCCCEeecccc
Confidence             123567999998865

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.42  E-value=0.24  Score=33.26  Aligned_cols=87  Identities=8%  Similarity=-0.029  Sum_probs=54.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--  102 (139)
                      .+++.+|--|+ ++..+..+++.+ ...++|+.++.+++.++.+.+.+....     -.++..+..|+.+.  +.++.  
T Consensus         7 l~gK~alITGa-s~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~   80 (260)
T d1h5qa_           7 FVNKTIIVTGG-NRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-----GVKTKAYQCDVSNTDIVTKTIQQ   80 (260)
T ss_dssp             CTTEEEEEETT-TSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHH
Confidence            45677777775 455566666655 224599999998877766655554311     15688888898762  22221  


Q ss_pred             hhccCCceeEEecCcccc
Q psy5757         103 LMMKFDRYDFLPHAPAES  120 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~~  120 (139)
                      ....++++|+++.|....
T Consensus        81 ~~~~~g~iDilVnnAg~~   98 (260)
T d1h5qa_          81 IDADLGPISGLIANAGVS   98 (260)
T ss_dssp             HHHHSCSEEEEEECCCCC
T ss_pred             HHHHhCCCcEeccccccc
Confidence            122467899999887643

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=93.38  E-value=0.39  Score=31.92  Aligned_cols=81  Identities=20%  Similarity=0.202  Sum_probs=50.4

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~  103 (139)
                      +++.+|--|++ +..+..+++.+ ...++|+..+.+++.++.+.+.+.         .+...+..|+.+.  .+++.  .
T Consensus         3 ~gK~alITGas-~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~   72 (243)
T d1q7ba_           3 EGKIALVTGAS-RGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG---------ANGKGLMLNVTDPASIESVLEKI   72 (243)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC---------CCCcEEEEEecCHHHhhhhhhhh
Confidence            45667666655 45556555554 223499999999988877766553         3556777887651  22221  1


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ...++++|+++.|...
T Consensus        73 ~~~~g~iDilVnnAg~   88 (243)
T d1q7ba_          73 RAEFGEVDILVNNAGI   88 (243)
T ss_dssp             HHHTCSCSEEEECCCC
T ss_pred             hcccCCcceehhhhhh
Confidence            1235689999987653

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.32  E-value=0.29  Score=32.51  Aligned_cols=80  Identities=8%  Similarity=0.032  Sum_probs=51.3

Q ss_pred             eEEEEcccCChhHHHHHHHc----CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          32 KVLEIGSGSGYLTNMISELM----NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~----~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +||--| ++.+.+..+++.+    ....+|+..+.+++.++.+++..+.       ..++.++..|+.+.  .+++..  
T Consensus         4 tilITG-as~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dvs~~~~v~~~~~~i   75 (248)
T d1snya_           4 SILITG-CNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN-------HSNIHILEIDLRNFDAYDKLVADI   75 (248)
T ss_dssp             EEEESC-CSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH-------CTTEEEEECCTTCGGGHHHHHHHH
T ss_pred             EEEEeC-CCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc-------CCcEEEEEEEeccHHHHHHHHhhh
Confidence            466444 4556777777654    2345899999888777766654443       26788899888751  222211  


Q ss_pred             --hccCCceeEEecCccc
Q psy5757         104 --MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 --~~~~~~~D~vi~~~~~  119 (139)
                        ...++++|+++.|...
T Consensus        76 ~~~~~~~~iDiLvnNAg~   93 (248)
T d1snya_          76 EGVTKDQGLNVLFNNAGI   93 (248)
T ss_dssp             HHHHGGGCCSEEEECCCC
T ss_pred             HHHhhcCCcceEEeeccc
Confidence              1245679999998764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.28  E-value=0.54  Score=31.49  Aligned_cols=86  Identities=12%  Similarity=0.074  Sum_probs=55.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .+++.+|--|++ +..+..+++.+ ...++|+..+.+++.++.+.+.+...      ..++.++..|+.+.  ..++.. 
T Consensus         6 L~GK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~------g~~~~~~~~Dv~~~~~v~~~~~~   78 (259)
T d2ae2a_           6 LEGCTALVTGGS-RGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK------GFKVEASVCDLSSRSERQELMNT   78 (259)
T ss_dssp             CTTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCCceEEEeeCCCHHHHHHHHHH
Confidence            367788877755 45555555554 22349999999999998887777651      14677888888752  222211 


Q ss_pred             -hccCC-ceeEEecCcccc
Q psy5757         104 -MMKFD-RYDFLPHAPAES  120 (139)
Q Consensus       104 -~~~~~-~~D~vi~~~~~~  120 (139)
                       ...++ ++|+++.|.-..
T Consensus        79 ~~~~~~~~idilvnnAG~~   97 (259)
T d2ae2a_          79 VANHFHGKLNILVNNAGIV   97 (259)
T ss_dssp             HHHHTTTCCCEEEECCCCC
T ss_pred             HHHHhCCCceEEEECCcee
Confidence             12334 799999887643

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=93.25  E-value=0.36  Score=32.42  Aligned_cols=82  Identities=13%  Similarity=0.128  Sum_probs=51.3

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +++.+|--|+++| .+..+++.+. ..++|+..+.+++.++.+.+.+.         .++.++..|+.+.  .+++..  
T Consensus         4 ~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~   73 (254)
T d1hdca_           4 SGKTVIITGGARG-LGAEAARQAVAAGARVVLADVLDEEGAATARELG---------DAARYQHLDVTIEEDWQRVVAYA   73 (254)
T ss_dssp             CCSEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------CceEEEEcccCCHHHHHHHHHHH
Confidence            5678888776655 4455555441 23499999999877666554432         4677888888751  222211  


Q ss_pred             hccCCceeEEecCcccc
Q psy5757         104 MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~~  120 (139)
                      ...++++|++|.|....
T Consensus        74 ~~~~g~iDilVnnAg~~   90 (254)
T d1hdca_          74 REEFGSVDGLVNNAGIS   90 (254)
T ss_dssp             HHHHSCCCEEEECCCCC
T ss_pred             HHHcCCccEEEecCccc
Confidence            12356799999887643

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.25  E-value=0.59  Score=31.31  Aligned_cols=86  Identities=9%  Similarity=0.089  Sum_probs=55.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      -+++.+|-.|+. ++.+..+++.+ ...++|+..+.+++.++.+.+.+...      ..+++++..|+.+.  ++++.. 
T Consensus         4 L~gK~alITGas-~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~------~~~~~~~~~D~s~~~~~~~~~~~   76 (258)
T d1ae1a_           4 LKGTTALVTGGS-KGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK------GLNVEGSVCDLLSRTERDKLMQT   76 (258)
T ss_dssp             CTTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCCceEEEeecCCHHHHHHHHHH
Confidence            367888888775 55555555443 22349999999998888887777661      14677888888762  222211 


Q ss_pred             -hccC-CceeEEecCcccc
Q psy5757         104 -MMKF-DRYDFLPHAPAES  120 (139)
Q Consensus       104 -~~~~-~~~D~vi~~~~~~  120 (139)
                       .... ..+|+++.|...+
T Consensus        77 ~~~~~~g~idilinnag~~   95 (258)
T d1ae1a_          77 VAHVFDGKLNILVNNAGVV   95 (258)
T ss_dssp             HHHHTTSCCCEEEECCCCC
T ss_pred             HHHHhCCCcEEEecccccc
Confidence             1123 4689998877644

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.15  E-value=0.083  Score=33.57  Aligned_cols=47  Identities=15%  Similarity=0.263  Sum_probs=36.5

Q ss_pred             cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      .++++.+|+-+|||. |..+..+++..+. .+|+++|.+++.++.+++.
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHHc
Confidence            378999999999984 4556666666652 3899999999999888763

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=92.96  E-value=0.073  Score=37.02  Aligned_cols=77  Identities=18%  Similarity=0.239  Sum_probs=45.8

Q ss_pred             CeEEEEcccCChhHHHHHHHc-CCCceEEEEeCC----HHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757          31 SKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHV----PQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM  105 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~----~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  105 (139)
                      |+||-.| |+|..+..+++.+ ...-+|+++|..    ........+ ..        ..+++++.+|+.+ ...+....
T Consensus         1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~-~~--------~~~~~~~~~Dl~d-~~~l~~~~   69 (338)
T d1udca_           1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LG--------GKHPTFVEGDIRN-EALMTEIL   69 (338)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHH-HH--------TSCCEEEECCTTC-HHHHHHHH
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHh-hc--------CCCCEEEEeecCC-HHHHHHHH
Confidence            4666654 7999888888776 122389999842    222222111 11        2689999999887 33332222


Q ss_pred             cCCceeEEecCcc
Q psy5757         106 KFDRYDFLPHAPA  118 (139)
Q Consensus       106 ~~~~~D~vi~~~~  118 (139)
                      ....+|+|+...+
T Consensus        70 ~~~~~d~ViHlAa   82 (338)
T d1udca_          70 HDHAIDTVIHFAG   82 (338)
T ss_dssp             HHTTCSEEEECCS
T ss_pred             hccCCCEEEECCC
Confidence            2235799987654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.94  E-value=0.31  Score=32.64  Aligned_cols=83  Identities=14%  Similarity=0.104  Sum_probs=52.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--  103 (139)
                      +++.+|--|++ ++.+..+++.+ ...++|+..+.+++.++.+.+.+.         .++..+..|+.+.  ..++..  
T Consensus         4 ~gK~alVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~---------~~~~~~~~Dvt~~~~v~~~~~~~   73 (256)
T d1k2wa_           4 DGKTALITGSA-RGIGRAFAEAYVREGARVAIADINLEAARATAAEIG---------PAACAIALDVTDQASIDRCVAEL   73 (256)
T ss_dssp             TTEEEEEETCS-SHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC---------TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------CceEEEEeeCCCHHHHHHHHHHH
Confidence            56677777755 45555555554 223599999999887776655542         4677888888762  222211  


Q ss_pred             hccCCceeEEecCccccc
Q psy5757         104 MMKFDRYDFLPHAPAESW  121 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~~~  121 (139)
                      ...++++|+++.|.....
T Consensus        74 ~~~~g~iDilVnnAg~~~   91 (256)
T d1k2wa_          74 LDRWGSIDILVNNAALFD   91 (256)
T ss_dssp             HHHHSCCCEEEECCCCCC
T ss_pred             HHHhCCccEEEeeccccc
Confidence            123468999999887443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.89  E-value=0.39  Score=30.08  Aligned_cols=45  Identities=13%  Similarity=0.188  Sum_probs=33.4

Q ss_pred             cCCCCCeEEEEcc--cCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGS--GSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++++||-.|+  |.|..+..+++..+.  +++++.-+++..+.+++
T Consensus        22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~~~~~l~~   68 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAKREMLSR   68 (183)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCCCcccccchhhccccc--cceeeeccccccccccc
Confidence            3788899998773  356777888887764  88888888776666654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=92.82  E-value=0.28  Score=30.60  Aligned_cols=47  Identities=15%  Similarity=0.150  Sum_probs=35.0

Q ss_pred             cCCCCCeEEEEcccCChh-HHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGSGYL-TNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G~~-~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      .++++.+|+-+|+|.+.. ...+++... ..+|+++|.+++.++.+++.
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHHc
Confidence            478999999999987544 444444443 44899999999988887763

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.88  Score=31.11  Aligned_cols=91  Identities=9%  Similarity=0.161  Sum_probs=56.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .+++.+|--|+++| .+..+++.+ ...++|+..+.+++.++.+.+.+...... ....++..+..|+.+.  +.++.. 
T Consensus        10 L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~-~~~~~~~~~~~Dvs~~~~v~~~~~~   87 (297)
T d1yxma1          10 LQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP-TKQARVIPIQCNIRNEEEVNNLVKS   87 (297)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT-TCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc-ccCceEEEEeccCCCHHHHHHHHHH
Confidence            46678887775554 555555544 22359999999998888877766541100 0124688888998762  222211 


Q ss_pred             -hccCCceeEEecCcccc
Q psy5757         104 -MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~~  120 (139)
                       ...++.+|++|.|....
T Consensus        88 ~~~~~G~iDiLVnnAg~~  105 (297)
T d1yxma1          88 TLDTFGKINFLVNNGGGQ  105 (297)
T ss_dssp             HHHHHSCCCEEEECCCCC
T ss_pred             HHHHhCCeEEEEeecccc
Confidence             12356799999887543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.44  E-value=0.29  Score=29.12  Aligned_cols=65  Identities=8%  Similarity=-0.027  Sum_probs=45.8

Q ss_pred             ccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCc
Q psy5757          38 SGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAP  117 (139)
Q Consensus        38 ~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~  117 (139)
                      ||.|..+..+++.+. +..++.+|.++...+.++.            ..+.++.+|+.+ ...+ ..+..++.+.++...
T Consensus         6 ~G~g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~~------------~~~~~i~Gd~~~-~~~L-~~a~i~~A~~vi~~~   70 (129)
T d2fy8a1           6 CGWSESTLECLRELR-GSEVFVLAEDENVRKKVLR------------SGANFVHGDPTR-VSDL-EKANVRGARAVIVNL   70 (129)
T ss_dssp             ESCCHHHHHHHHTSC-GGGEEEEESCTTHHHHHHH------------TTCEEEESCTTS-HHHH-HHTTCTTCSEEEECC
T ss_pred             ECCCHHHHHHHHHHc-CCCCEEEEcchHHHHHHHh------------cCccccccccCC-HHHH-HHhhhhcCcEEEEec
Confidence            678899999999885 4578999999887765432            457788899876 2222 334556677776654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.38  E-value=0.5  Score=31.71  Aligned_cols=85  Identities=14%  Similarity=0.092  Sum_probs=54.4

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-  104 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-  104 (139)
                      +++.+|--|+++| .+..+++.+ ...++|+.++.+++.++.+.+.+...      ..++..+..|+.+.  ...+... 
T Consensus         7 kgK~alVTGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d1xq1a_           7 KAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK------GFQVTGSVCDASLRPEREKLMQTV   79 (259)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCceEEEeccCCCHHHHHHHHHHH
Confidence            6778887776554 455555544 22349999999998888887777651      14688888888751  2222111 


Q ss_pred             -ccC-CceeEEecCcccc
Q psy5757         105 -MKF-DRYDFLPHAPAES  120 (139)
Q Consensus       105 -~~~-~~~D~vi~~~~~~  120 (139)
                       ..+ +++|+++.|....
T Consensus        80 ~~~~~g~idilvnnAG~~   97 (259)
T d1xq1a_          80 SSMFGGKLDILINNLGAI   97 (259)
T ss_dssp             HHHHTTCCSEEEEECCC-
T ss_pred             HHHhCCCccccccccccc
Confidence             122 5799999987643

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=92.27  E-value=0.85  Score=30.73  Aligned_cols=81  Identities=10%  Similarity=0.075  Sum_probs=51.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~  103 (139)
                      +++.+|--|++ +..+..+++.+ ...++|+.++.+++.++...+.+.         .++..+..|+.+.  ..++.  .
T Consensus         4 ~gK~alITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~---------~~~~~~~~Dv~~~~~~~~~~~~~   73 (276)
T d1bdba_           4 KGEAVLITGGA-SGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG---------DNVLGIVGDVRSLEDQKQAASRC   73 (276)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---------CCeeEEecccccHHHHHHHHHHH
Confidence            56777777755 45566665555 223599999999887776655432         4677788887751  12211  1


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ...++.+|+++.|.-.
T Consensus        74 ~~~~g~idilvnnAG~   89 (276)
T d1bdba_          74 VARFGKIDTLIPNAGI   89 (276)
T ss_dssp             HHHHSCCCEEECCCCC
T ss_pred             HHHhCCcccccccccc
Confidence            1235679999988753

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=92.03  E-value=0.21  Score=33.99  Aligned_cols=79  Identities=15%  Similarity=0.172  Sum_probs=45.0

Q ss_pred             eEEEEcccCChhHHHHHHHc-CCCceEEEEe-CCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757          32 KVLEIGSGSGYLTNMISELM-NSTGQVIGIE-HVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR  109 (139)
Q Consensus        32 ~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d-~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~  109 (139)
                      +||- ..|+|..+..+++.+ ...-+|+++| ++........+.+..       ..+++++.+|+.+ ...+.......+
T Consensus         2 KILV-TGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~-------~~~~~~i~~Di~~-~~~l~~~~~~~~   72 (338)
T d1orra_           2 KLLI-TGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS-------LGNFEFVHGDIRN-KNDVTRLITKYM   72 (338)
T ss_dssp             EEEE-ETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT-------TCCCEEEECCTTC-HHHHHHHHHHHC
T ss_pred             EEEE-ECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc-------cCCcEEEEcccCC-HHHHHHHHHhcC
Confidence            5664 457898888887766 2234899998 332221111111222       3688999999876 222221111235


Q ss_pred             eeEEecCccc
Q psy5757         110 YDFLPHAPAE  119 (139)
Q Consensus       110 ~D~vi~~~~~  119 (139)
                      +|+|+.....
T Consensus        73 ~d~Vih~aa~   82 (338)
T d1orra_          73 PDSCFHLAGQ   82 (338)
T ss_dssp             CSEEEECCCC
T ss_pred             CceEEeeccc
Confidence            7999877653

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.01  E-value=0.33  Score=30.19  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=34.8

Q ss_pred             CCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          27 LNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        27 ~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      ++++++|+-+|+| .|..+..+++..+.  ++++++.+++..+.+++
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~   72 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKA   72 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHH
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccc--cchhhccchhHHHHHhc
Confidence            7899999999987 46677778887653  88899999887776654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=91.99  E-value=0.46  Score=31.77  Aligned_cols=85  Identities=8%  Similarity=0.060  Sum_probs=51.5

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCC-HHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhh
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHV-PQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVEL  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~-~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~  103 (139)
                      +++.+|--|++ ++.+..+++.+ ...++|+..+.+ +..++.+.+.+.. .      ..++.++..|+.+.  ++++..
T Consensus         3 ~gK~alITGas-~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~------g~~~~~~~~Dv~~~~~v~~~~~   75 (260)
T d1x1ta1           3 KGKVAVVTGST-SGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH------GVKVLYDGADLSKGEAVRGLVD   75 (260)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH------TSCEEEECCCTTSHHHHHHHHH
T ss_pred             CcCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHH
Confidence            45667755544 55566666554 223489999986 5666666665544 2      15788888898862  222211


Q ss_pred             --hccCCceeEEecCcccc
Q psy5757         104 --MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 --~~~~~~~D~vi~~~~~~  120 (139)
                        ...++++|++|.|.-..
T Consensus        76 ~~~~~~G~iDiLVnnAG~~   94 (260)
T d1x1ta1          76 NAVRQMGRIDILVNNAGIQ   94 (260)
T ss_dssp             HHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHhCCCcEEEeecccc
Confidence              12356799999887643

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.54  E-value=0.88  Score=30.25  Aligned_cols=86  Identities=9%  Similarity=0.079  Sum_probs=54.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcC-CCceEEE-EeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIG-IEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVE  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~-~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~  102 (139)
                      ..|+.+|--| |+++.+.++++.+. ..++|+. ...++..++.+.+.+.. +       .++..+..|+.+.  ...+.
T Consensus         4 L~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g-------~~~~~~~~D~~~~~~v~~~~   75 (259)
T d1ja9a_           4 LAGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG-------AQGVAIQADISKPSEVVALF   75 (259)
T ss_dssp             TTTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------CCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC-------CCceEecCCCCCHHHHHHHH
Confidence            3567888666 55666666666552 2236764 46777777877777766 3       4788888888751  11111


Q ss_pred             --hhccCCceeEEecCccccc
Q psy5757         103 --LMMKFDRYDFLPHAPAESW  121 (139)
Q Consensus       103 --~~~~~~~~D~vi~~~~~~~  121 (139)
                        .....+.+|+++.|....+
T Consensus        76 ~~~~~~~g~idilinnag~~~   96 (259)
T d1ja9a_          76 DKAVSHFGGLDFVMSNSGMEV   96 (259)
T ss_dssp             HHHHHHHSCEEEEECCCCCCC
T ss_pred             HHHHHHcCCCcEEEecccccc
Confidence              1223567999999987544

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.52  E-value=0.51  Score=29.28  Aligned_cols=47  Identities=17%  Similarity=0.233  Sum_probs=36.1

Q ss_pred             cCCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        26 ~~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      .++++.+||-.||| .|..+..+++.... ..++++|.+++..+.+++.
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHh
Confidence            37899999999887 44566777777652 3899999999888887763

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=91.51  E-value=0.15  Score=36.50  Aligned_cols=84  Identities=13%  Similarity=0.170  Sum_probs=45.7

Q ss_pred             CeEEEEcccCChhHHHHHHHc---------------CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCc--EEEEEc
Q psy5757          31 SKVLEIGSGSGYLTNMISELM---------------NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGH--IKFVAL   92 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~---------------~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~--i~~~~~   92 (139)
                      -+|.|+||.+|..+..++...               .|+-+|+--|.-.+=....=+.+.. ..   . ..+  +.-+.+
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~---~-~~~~f~~gvpG  128 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND---V-DGVCFINGVPG  128 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS---C-TTCEEEEEEES
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhcccccc---C-CCCeEEEecCC
Confidence            478999999998885332211               2334566666443322222222211 00   0 011  223445


Q ss_pred             cchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757          93 GMIKRIETVELMMKFDRYDFLPHAPAESWMNI  124 (139)
Q Consensus        93 d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~  124 (139)
                      ++..   ++   .|..++++++|..++||+..
T Consensus       129 SFY~---rL---fP~~Slh~~~Ss~alHWLS~  154 (359)
T d1m6ex_         129 SFYG---RL---FPRNTLHFIHSSYSLMWLSQ  154 (359)
T ss_dssp             CSSS---CC---SCTTCBSCEEEESCTTBCSS
T ss_pred             chhh---hc---CCCCceEEeeehhhhhhhhc
Confidence            5432   11   35678999999999999874

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.43  E-value=0.45  Score=31.80  Aligned_cols=83  Identities=10%  Similarity=0.008  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .+++.+|--|++ +..+..+++.+ ...++|+..+.+++.++.+.+.+.         .+..++..|+.+.  ..++.. 
T Consensus         4 L~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~~~~~~~~   73 (253)
T d1hxha_           4 LQGKVALVTGGA-SGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG---------ERSMFVRHDVSSEADWTLVMAA   73 (253)
T ss_dssp             TTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC---------TTEEEECCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------CCeEEEEeecCCHHHHHHHHHH
Confidence            356777766654 55566666654 223499999999888777665542         3566777777651  222211 


Q ss_pred             -hccCCceeEEecCcccc
Q psy5757         104 -MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~~  120 (139)
                       ...++.+|+++.|.-..
T Consensus        74 ~~~~~g~iDilVnnAG~~   91 (253)
T d1hxha_          74 VQRRLGTLNVLVNNAGIL   91 (253)
T ss_dssp             HHHHHCSCCEEEECCCCC
T ss_pred             HHHHhCCCCeEEeccccc
Confidence             12356799999988643

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.42  E-value=0.63  Score=30.81  Aligned_cols=79  Identities=14%  Similarity=0.181  Sum_probs=48.9

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--hhHHHh--h
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--RIETVE--L  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~--~  103 (139)
                      +++.+|--|+++| .+..+++.+ ...++|+..+.+++.++.+.+.           -+.+.+..|+.+  .++++.  .
T Consensus         4 ~gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~-----------~~~~~~~~Dv~~~~~v~~~~~~~   71 (242)
T d1ulsa_           4 KDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEA-----------VGAHPVVMDVADPASVERGFAEA   71 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-----------TTCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-----------cCCeEEEEecCCHHHHHHHHHHH
Confidence            4677777776555 555555554 2235999999998777666543           245567778775  122221  1


Q ss_pred             hccCCceeEEecCccc
Q psy5757         104 MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~  119 (139)
                      ...++++|+++.|.-.
T Consensus        72 ~~~~g~iDilVnnAG~   87 (242)
T d1ulsa_          72 LAHLGRLDGVVHYAGI   87 (242)
T ss_dssp             HHHHSSCCEEEECCCC
T ss_pred             HHhcCCceEEEECCcc
Confidence            1234679999988753

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.41  E-value=0.77  Score=28.11  Aligned_cols=45  Identities=11%  Similarity=0.054  Sum_probs=34.3

Q ss_pred             cCCCCCeEEEEcccCC-hhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          26 HLNENSKVLEIGSGSG-YLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        26 ~~~~~~~iLdiG~G~G-~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      .++++.+||-.|+|.- .....+++..+  +++++++.+++.++.+++
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHHH
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCC--CeEeccCCCHHHhhhhhh
Confidence            3788999999998854 45555566554  489999999998888766

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.40  E-value=0.82  Score=30.25  Aligned_cols=85  Identities=16%  Similarity=0.124  Sum_probs=51.9

Q ss_pred             CCCCeEEEEcccCC-hhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh-
Q psy5757          28 NENSKVLEIGSGSG-YLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE-  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G-~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~-  102 (139)
                      .+++.+|--|++++ +.+..+++++ ...++|+..+.++...+.+++....       ..+...+..|+.+.  .+.+. 
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~   78 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEA-------LGGALLFRADVTQDEELDALFA   78 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH-------TTCCEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhc-------cCcccccccccCCHHHHHHHHH
Confidence            46788998887553 3555555544 1234888889887777766665544       23456677787651  22211 


Q ss_pred             -hhccCCceeEEecCccc
Q psy5757         103 -LMMKFDRYDFLPHAPAE  119 (139)
Q Consensus       103 -~~~~~~~~D~vi~~~~~  119 (139)
                       ....++++|+++.|...
T Consensus        79 ~~~~~~g~iDilVnnag~   96 (256)
T d1ulua_          79 GVKEAFGGLDYLVHAIAF   96 (256)
T ss_dssp             HHHHHHSSEEEEEECCCC
T ss_pred             HHHHhcCCceEEEecccc
Confidence             11235679999987653

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=91.06  E-value=1.1  Score=28.07  Aligned_cols=52  Identities=17%  Similarity=0.151  Sum_probs=37.3

Q ss_pred             HHHHhcccCCCCCeEEEEcccC--ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          19 YLSIIQPHLNENSKVLEIGSGS--GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        19 ~~~~l~~~~~~~~~iLdiG~G~--G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      .+.... .++++++||-.|++.  |.....+++..+  ++++++.-+++..+.+++.
T Consensus        20 al~~~~-~v~~G~~VlV~ga~ggvG~~aiqlak~~G--a~vi~~~~~~~~~~~~~~~   73 (182)
T d1v3va2          20 GLLEVC-GVKGGETVLVSAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKIAYLKQI   73 (182)
T ss_dssp             HHHTTT-CCCSSCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHT
T ss_pred             HHHHHh-CCCCCCEEEEEeCCCchhHHHHHHHHccC--CEEEEeCCCHHHHHHHHhh
Confidence            334343 378999999877754  467777788775  4999999998877666554

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=91.04  E-value=0.67  Score=30.64  Aligned_cols=85  Identities=12%  Similarity=0.219  Sum_probs=53.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      .+++.+|-.|++ ++.+..+++.+ ...++|+..+.+.+.++...+.+         ..++.++..|+.+.  +.++.. 
T Consensus         3 l~gK~alItGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dls~~~~i~~~~~~   72 (241)
T d2a4ka1           3 LSGKTILVTGAA-SGIGRAALDLFAREGASLVAVDREERLLAEAVAAL---------EAEAIAVVADVSDPKAVEAVFAE   72 (241)
T ss_dssp             TTTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC---------CSSEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---------CCceEEEEecCCCHHHHHHHHHH
Confidence            356777777765 55556665555 23459999999987665554432         24677888888752  222211 


Q ss_pred             -hccCCceeEEecCcccccc
Q psy5757         104 -MMKFDRYDFLPHAPAESWM  122 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~~~~  122 (139)
                       ...++++|+++.|...++.
T Consensus        73 i~~~~g~iDiLinnAg~~~~   92 (241)
T d2a4ka1          73 ALEEFGRLHGVAHFAGVAHS   92 (241)
T ss_dssp             HHHHHSCCCEEEEGGGGTTT
T ss_pred             HHHHhCCccEeccccccccc
Confidence             1134679999998875544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=90.85  E-value=0.12  Score=30.96  Aligned_cols=65  Identities=14%  Similarity=0.186  Sum_probs=39.5

Q ss_pred             ccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecC
Q psy5757          38 SGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHA  116 (139)
Q Consensus        38 ~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~  116 (139)
                      ||.|.++..+++.+. ..-.++.+|.+++.++.+++            .....+.+|..+ ...+ ..+.....|.++..
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~------------~~~~~~~gd~~~-~~~l-~~a~i~~a~~vi~~   71 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS------------YATHAVIANATE-ENEL-LSLGIRNFEYVIVA   71 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT------------TCSEEEECCTTC-TTHH-HHHTGGGCSEEEEC
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH------------hCCcceeeeccc-chhh-hccCCccccEEEEE
Confidence            466777777777652 23489999999988887643            223466788765 2222 22234456765543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=90.62  E-value=0.97  Score=30.24  Aligned_cols=84  Identities=17%  Similarity=0.194  Sum_probs=50.8

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCH-HHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVP-QLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~-~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-  103 (139)
                      +++.+|--|+++| .+..+++.+. ..++|+..+.+. ..++.+.+.+...      ..++..+..|+.+.  ..++.. 
T Consensus         6 ~gK~alITGas~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~------g~~~~~~~~Dvt~~~~v~~~~~~   78 (261)
T d1geea_           6 EGKVVVITGSSTG-LGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV------GGEAIAVKGDVTVESDVINLVQS   78 (261)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHH
Confidence            5667776665554 5555555542 234899888764 4566666666551      14677888898762  222211 


Q ss_pred             -hccCCceeEEecCccc
Q psy5757         104 -MMKFDRYDFLPHAPAE  119 (139)
Q Consensus       104 -~~~~~~~D~vi~~~~~  119 (139)
                       ...++++|+++.|.-.
T Consensus        79 ~~~~~G~iDiLVnnAG~   95 (261)
T d1geea_          79 AIKEFGKLDVMINNAGL   95 (261)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHHhCCCCEeecccee
Confidence             1235679999988764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=90.56  E-value=0.11  Score=35.92  Aligned_cols=82  Identities=12%  Similarity=0.078  Sum_probs=47.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK  106 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  106 (139)
                      -++++||-.| |+|..+..+++.+ ...-+|++++.++.......+....       .++++++.+|+.+ ...+.....
T Consensus         6 ~~~KkILVTG-~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~-------~~~i~~~~~Dl~d-~~~l~~~~~   76 (356)
T d1rkxa_           6 WQGKRVFVTG-HTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV-------ADGMQSEIGDIRD-QNKLLESIR   76 (356)
T ss_dssp             HTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTT-------TTTSEEEECCTTC-HHHHHHHHH
T ss_pred             hCCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhc-------ccCCeEEEeeccC-hHhhhhhhh
Confidence            4568898876 6788888877766 1233899999764332222121111       3678999999875 222211112


Q ss_pred             CCceeEEecCcc
Q psy5757         107 FDRYDFLPHAPA  118 (139)
Q Consensus       107 ~~~~D~vi~~~~  118 (139)
                      ...+|+|+...+
T Consensus        77 ~~~~~~v~~~aa   88 (356)
T d1rkxa_          77 EFQPEIVFHMAA   88 (356)
T ss_dssp             HHCCSEEEECCS
T ss_pred             hchhhhhhhhhc
Confidence            234567665443

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.45  E-value=0.34  Score=34.03  Aligned_cols=82  Identities=18%  Similarity=0.154  Sum_probs=44.9

Q ss_pred             CCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHH----------------HHHHhhccccccCCcEEEEEc
Q psy5757          30 NSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSI----------------QNILHSNARLLTDGHIKFVAL   92 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~----------------~~~~~~~~~~~~~~~i~~~~~   92 (139)
                      |++||--| |+|..+..+++.+ ...-+|+++|.-........                .....     +...+++++.+
T Consensus         1 g~kILVTG-atGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~   74 (393)
T d1i24a_           1 GSRVMVIG-GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA-----LTGKSIELYVG   74 (393)
T ss_dssp             -CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHH-----HHCCCCEEEES
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHh-----hcCCCcEEEEc
Confidence            57887765 5998888887766 12238999983211111111                11111     11267899999


Q ss_pred             cchhhhHHHhhhccCCceeEEecCcc
Q psy5757          93 GMIKRIETVELMMKFDRYDFLPHAPA  118 (139)
Q Consensus        93 d~~~~~~~~~~~~~~~~~D~vi~~~~  118 (139)
                      |+.+ ...+..-....++|+|+...+
T Consensus        75 Dl~d-~~~l~~~~~~~~~d~ViHlAa   99 (393)
T d1i24a_          75 DICD-FEFLAESFKSFEPDSVVHFGE   99 (393)
T ss_dssp             CTTS-HHHHHHHHHHHCCSEEEECCS
T ss_pred             cCCC-HHHHHHHHHhhcchheecccc
Confidence            9876 222221111225788887654

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.42  E-value=0.69  Score=30.37  Aligned_cols=72  Identities=13%  Similarity=0.212  Sum_probs=45.3

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF  107 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~  107 (139)
                      +++++|--|+++ ..+..+++.+ ...++|+..+.+++.++       .        ...+++..|+.+.+..+..  ..
T Consensus         3 kgK~~lVTGas~-GIG~aia~~l~~~Ga~V~~~~r~~~~l~-------~--------~~~~~~~~Dv~~~~~~~~~--~~   64 (234)
T d1o5ia_           3 RDKGVLVLAASR-GIGRAVADVLSQEGAEVTICARNEELLK-------R--------SGHRYVVCDLRKDLDLLFE--KV   64 (234)
T ss_dssp             TTCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHH-------H--------TCSEEEECCTTTCHHHHHH--HS
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHH-------h--------cCCcEEEcchHHHHHHHHH--Hh
Confidence            467788777654 4555555544 22348999999975443       2        1224566777665554433  35


Q ss_pred             CceeEEecCcc
Q psy5757         108 DRYDFLPHAPA  118 (139)
Q Consensus       108 ~~~D~vi~~~~  118 (139)
                      +++|+++.|.-
T Consensus        65 g~iD~lVnnAG   75 (234)
T d1o5ia_          65 KEVDILVLNAG   75 (234)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCcEEEeccc
Confidence            78999998875

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.77  E-value=1.7  Score=28.99  Aligned_cols=87  Identities=13%  Similarity=0.139  Sum_probs=52.0

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--  102 (139)
                      .+|+.+|--|+++| .+..+++.+ ....+|+.++.+++.++.+.+......     ..+......|..+.  .....  
T Consensus        12 L~GK~alITGassG-IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~   85 (269)
T d1xu9a_          12 LQGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG-----AASAHYIAGTMEDMTFAEQFVAQ   85 (269)
T ss_dssp             GTTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT-----CSEEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh-----cccchhhhhhhhhHHHHHHHHHH
Confidence            45678887776665 444444444 123499999999999988877655411     24566676665531  11111  


Q ss_pred             hhccCCceeEEecCcccc
Q psy5757         103 LMMKFDRYDFLPHAPAES  120 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~~  120 (139)
                      .....+.+|+++.|....
T Consensus        86 ~~~~~g~~~~li~nag~~  103 (269)
T d1xu9a_          86 AGKLMGGLDMLILNHITN  103 (269)
T ss_dssp             HHHHHTSCSEEEECCCCC
T ss_pred             HHHHhCCccccccccccc
Confidence            111245688888776543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=89.53  E-value=1  Score=29.72  Aligned_cols=80  Identities=8%  Similarity=0.081  Sum_probs=49.1

Q ss_pred             EEEcccCChhHHHHHHHcCC--------CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh-
Q psy5757          34 LEIGSGSGYLTNMISELMNS--------TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE-  102 (139)
Q Consensus        34 LdiG~G~G~~~~~l~~~~~~--------~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~-  102 (139)
                      |--|++ ++.+..+++.+..        ...++..+.+++.++.+.+.+...      -.++.++..|+.+.  +.++. 
T Consensus         5 lITGas-~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~------g~~~~~~~~Dvt~~~~v~~~~~   77 (240)
T d2bd0a1           5 LITGAG-KGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE------GALTDTITADISDMADVRRLTT   77 (240)
T ss_dssp             EEETTT-SHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT------TCEEEEEECCTTSHHHHHHHHH
T ss_pred             EEccCC-CHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHH
Confidence            444544 4455555554421        113889999999888887777661      14677888888762  22221 


Q ss_pred             -hhccCCceeEEecCcccc
Q psy5757         103 -LMMKFDRYDFLPHAPAES  120 (139)
Q Consensus       103 -~~~~~~~~D~vi~~~~~~  120 (139)
                       ....++.+|+++.|....
T Consensus        78 ~~~~~~g~iDilvnnAg~~   96 (240)
T d2bd0a1          78 HIVERYGHIDCLVNNAGVG   96 (240)
T ss_dssp             HHHHHTSCCSEEEECCCCC
T ss_pred             HHHHHcCCcceeecccccc
Confidence             122467899999887643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.11  E-value=1.9  Score=28.74  Aligned_cols=86  Identities=13%  Similarity=0.059  Sum_probs=51.1

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCC-HHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh-
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHV-PQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE-  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~-~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~-  102 (139)
                      -+|+.+|--|++ +..+.++++.+. ..++|+..+.+ ++.++.+.+.+...      ..++.++..|..+.  ..++. 
T Consensus        16 L~gK~~lITGas-~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~------g~~~~~~~~D~~~~~~v~~~~~   88 (272)
T d1g0oa_          16 LEGKVALVTGAG-RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN------GSDAACVKANVGVVEDIVRMFE   88 (272)
T ss_dssp             CTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh------CCceeeEeCCCCCHHHHHHHHH
Confidence            356777777665 455555555542 23488888876 55566666655551      14678888888761  12111 


Q ss_pred             -hhccCCceeEEecCcccc
Q psy5757         103 -LMMKFDRYDFLPHAPAES  120 (139)
Q Consensus       103 -~~~~~~~~D~vi~~~~~~  120 (139)
                       ....++.+|+++.|....
T Consensus        89 ~~~~~~g~idilV~nag~~  107 (272)
T d1g0oa_          89 EAVKIFGKLDIVCSNSGVV  107 (272)
T ss_dssp             HHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHhCCCCccccccccc
Confidence             112346789999887643

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.13  E-value=0.59  Score=29.70  Aligned_cols=40  Identities=23%  Similarity=0.341  Sum_probs=29.0

Q ss_pred             CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757          31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ   72 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~   72 (139)
                      |+|--+  |.|+.+..+|..+...-+|+|+|+++..++...+
T Consensus         1 MkI~Vi--GlG~vGl~~a~~~a~g~~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           1 MKIAVA--GSGYVGLSLGVLLSLQNEVTIVDILPSKVDKINN   40 (196)
T ss_dssp             CEEEEE--CCSHHHHHHHHHHTTTSEEEEECSCHHHHHHHHT
T ss_pred             CEEEEE--CCChhHHHHHHHHHCCCcEEEEECCHHHHHHHhh
Confidence            455555  5677777777666555699999999998877653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=87.34  E-value=1.8  Score=28.55  Aligned_cols=79  Identities=14%  Similarity=0.058  Sum_probs=46.5

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--  102 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--  102 (139)
                      .+|+.+|--|++ ++.+..+++.+ ...++|+..+.+++..+.+++.            +..++..|+.+.  ..++.  
T Consensus         3 l~GK~alITGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~------------~~~~~~~Dv~~~~~v~~~~~~   69 (248)
T d2d1ya1           3 FAGKGVLVTGGA-RGIGRAIAQAFAREGALVALCDLRPEGKEVAEAI------------GGAFFQVDLEDERERVRFVEE   69 (248)
T ss_dssp             TTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH------------TCEEEECCTTCHHHHHHHHHH
T ss_pred             cCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc------------CCeEEEEeCCCHHHHHHHHHH
Confidence            457788877755 45555555544 2235999999998765443221            234566777651  22221  


Q ss_pred             hhccCCceeEEecCccc
Q psy5757         103 LMMKFDRYDFLPHAPAE  119 (139)
Q Consensus       103 ~~~~~~~~D~vi~~~~~  119 (139)
                      ....++++|++|.|.-.
T Consensus        70 ~~~~~G~iDiLVnnAG~   86 (248)
T d2d1ya1          70 AAYALGRVDVLVNNAAI   86 (248)
T ss_dssp             HHHHHSCCCEEEECCCC
T ss_pred             HHHhcCCCCeEEEeCcC
Confidence            11235689999988753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.28  E-value=0.54  Score=29.03  Aligned_cols=41  Identities=20%  Similarity=0.387  Sum_probs=28.3

Q ss_pred             eEEEEcccC--ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          32 KVLEIGSGS--GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        32 ~iLdiG~G~--G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      +|+-+|||.  ++++..+.+.. ...+++++|.+++.++.+++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g-~~~~I~~~D~~~~~~~~a~~~   45 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSG-FKGKIYGYDINPESISKAVDL   45 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTT-CCSEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEccCHHHHHHHHHHHhcC-CCeEEEEEECChHHHHHHHHh
Confidence            477788863  23444444433 345899999999999988775

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=86.65  E-value=0.3  Score=33.58  Aligned_cols=74  Identities=19%  Similarity=0.268  Sum_probs=44.3

Q ss_pred             CeEEEEcccCChhHHHHHHHc--CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757          31 SKVLEIGSGSGYLTNMISELM--NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD  108 (139)
Q Consensus        31 ~~iLdiG~G~G~~~~~l~~~~--~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~  108 (139)
                      |+||-.| |+|..+..+++.+  ....+|+++|.......       . +   ...++++++.+|+.+. ..+.... ..
T Consensus         1 MKILITG-~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~-------~-~---~~~~~~~~i~~Di~~~-~~~~~~~-~~   66 (342)
T d2blla1           1 MRVLILG-VNGFIGNHLTERLLREDHYEVYGLDIGSDAIS-------R-F---LNHPHFHFVEGDISIH-SEWIEYH-VK   66 (342)
T ss_dssp             CEEEEET-CSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG-------G-G---TTCTTEEEEECCTTTC-SHHHHHH-HH
T ss_pred             CEEEEEC-CCcHHHHHHHHHHHHCCCCEEEEEeCCCcchh-------h-h---ccCCCeEEEECccCCh-HHHHHHH-Hh
Confidence            5677766 4999998888765  11237999997632111       1 0   2247899999997642 1111111 12


Q ss_pred             ceeEEecCcc
Q psy5757         109 RYDFLPHAPA  118 (139)
Q Consensus       109 ~~D~vi~~~~  118 (139)
                      .+|+|++...
T Consensus        67 ~~d~Vih~a~   76 (342)
T d2blla1          67 KCDVVLPLVA   76 (342)
T ss_dssp             HCSEEEECBC
T ss_pred             CCCccccccc
Confidence            4788887655

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=86.64  E-value=2.1  Score=28.20  Aligned_cols=83  Identities=16%  Similarity=0.208  Sum_probs=48.1

Q ss_pred             CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L  103 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~  103 (139)
                      +++.+|--|+ +++.+..+++.+ ...++|+..|.++.  +.+....+.     . ..++..+..|+.+.  .+++.  .
T Consensus         4 ~gKvalVTGa-s~GIG~aia~~la~~Ga~V~~~~~~~~--~~~~~~~~~-----~-g~~~~~~~~Dvs~~~~v~~~~~~~   74 (247)
T d2ew8a1           4 KDKLAVITGG-ANGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIRN-----L-GRRVLTVKCDVSQPGDVEAFGKQV   74 (247)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHH-----T-TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCch--HHHHHHHHH-----c-CCcEEEEEeeCCCHHHHHHHHHHH
Confidence            4567776664 455556666555 22348999998754  223333333     1 14678888888762  22221  1


Q ss_pred             hccCCceeEEecCcccc
Q psy5757         104 MMKFDRYDFLPHAPAES  120 (139)
Q Consensus       104 ~~~~~~~D~vi~~~~~~  120 (139)
                      ...++++|+++.|.-..
T Consensus        75 ~~~~G~iDilVnnAG~~   91 (247)
T d2ew8a1          75 ISTFGRCDILVNNAGIY   91 (247)
T ss_dssp             HHHHSCCCEEEECCCCC
T ss_pred             HHHcCCCCEEEECCCCC
Confidence            12356899999887643

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=86.16  E-value=3.2  Score=27.30  Aligned_cols=86  Identities=14%  Similarity=0.067  Sum_probs=50.8

Q ss_pred             CCCCeEEEEccc-CChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh-
Q psy5757          28 NENSKVLEIGSG-SGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE-  102 (139)
Q Consensus        28 ~~~~~iLdiG~G-~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~-  102 (139)
                      .+++++|-.|+. +-+.+.++++.+ ...++|+.++.++...+.+++..+.+       .+..+...|..+.  ...+. 
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~-------~~~~~~~~d~~~~~~~~~~~~   75 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQEL-------NSPYVYELDVSKEEHFKSLYN   75 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHT-------TCCCEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhC-------CceeEeeecccchhhHHHHHH
Confidence            357889888864 335666666655 23459999999876666555554442       2344555665542  11111 


Q ss_pred             -hhccCCceeEEecCcccc
Q psy5757         103 -LMMKFDRYDFLPHAPAES  120 (139)
Q Consensus       103 -~~~~~~~~D~vi~~~~~~  120 (139)
                       .....+.+|+++.|....
T Consensus        76 ~~~~~~g~id~lV~nag~~   94 (274)
T d2pd4a1          76 SVKKDLGSLDFIVHSVAFA   94 (274)
T ss_dssp             HHHHHTSCEEEEEECCCCC
T ss_pred             HHHHHcCCCCeEEeecccc
Confidence             122356799999888643

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.27  E-value=2  Score=28.23  Aligned_cols=80  Identities=11%  Similarity=0.087  Sum_probs=46.9

Q ss_pred             CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--hhHHHhhh
Q psy5757          28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--RIETVELM  104 (139)
Q Consensus        28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~  104 (139)
                      .+++.+|--| |+++.+..+++.+. ..++|+.++.+++.++...+           ..+++....|...  ..+.... 
T Consensus         4 l~gK~alITG-as~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~-----------~~~~~~~~~d~~~~~~~~~~~~-   70 (245)
T d2ag5a1           4 LDGKVIILTA-AAQGIGQAAALAFAREGAKVIATDINESKLQELEK-----------YPGIQTRVLDVTKKKQIDQFAN-   70 (245)
T ss_dssp             TTTCEEEESS-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG-----------STTEEEEECCTTCHHHHHHHHH-
T ss_pred             CCCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-----------ccCCceeeeecccccccccccc-
Confidence            3567777666 45666666666552 23499999999765543221           2445566666543  2222212 


Q ss_pred             ccCCceeEEecCccccc
Q psy5757         105 MKFDRYDFLPHAPAESW  121 (139)
Q Consensus       105 ~~~~~~D~vi~~~~~~~  121 (139)
                       ....+|.++.+....+
T Consensus        71 -~~~~id~lVn~ag~~~   86 (245)
T d2ag5a1          71 -EVERLDVLFNVAGFVH   86 (245)
T ss_dssp             -HCSCCSEEEECCCCCC
T ss_pred             -ccccceeEEecccccC
Confidence             3457899988876443

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=82.39  E-value=4.5  Score=27.82  Aligned_cols=87  Identities=14%  Similarity=0.176  Sum_probs=47.6

Q ss_pred             CCeEEEEcccCChhHHHHHHHc--CCCceEEEEeC-C--------HHHHHHHHHHHHh--hccccccCCcEEEEEccchh
Q psy5757          30 NSKVLEIGSGSGYLTNMISELM--NSTGQVIGIEH-V--------PQLVNSSIQNILH--SNARLLTDGHIKFVALGMIK   96 (139)
Q Consensus        30 ~~~iLdiG~G~G~~~~~l~~~~--~~~~~v~~~d~-~--------~~~~~~a~~~~~~--~~~~~~~~~~i~~~~~d~~~   96 (139)
                      .|+||-. .|+|..+..+++.+  ...-+|+++|. .        .+..+.....+..  .........++.++.+|+.+
T Consensus         2 ~MKVLIT-G~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d   80 (383)
T d1gy8a_           2 HMRVLVC-GGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (383)
T ss_dssp             CCEEEEE-TTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             cCEEEEe-CCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence            5788854 58999888877765  12348999983 1        0111112222221  11111223568899999876


Q ss_pred             h--hHHHhhhccCCceeEEecCccc
Q psy5757          97 R--IETVELMMKFDRYDFLPHAPAE  119 (139)
Q Consensus        97 ~--~~~~~~~~~~~~~D~vi~~~~~  119 (139)
                      .  +.++..  ....+|+|++..+.
T Consensus        81 ~~~l~~~~~--~~~~~d~ViH~Aa~  103 (383)
T d1gy8a_          81 EDFLNGVFT--RHGPIDAVVHMCAF  103 (383)
T ss_dssp             HHHHHHHHH--HSCCCCEEEECCCC
T ss_pred             HHHhhhhhh--ccceeehhhccccc
Confidence            2  222211  23457999887753

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=81.88  E-value=2.1  Score=28.30  Aligned_cols=83  Identities=12%  Similarity=0.101  Sum_probs=43.2

Q ss_pred             CCCeEEEEcccCChhHHHHHHHcC-CCceEEEE-eCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh---hhHHHh-
Q psy5757          29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGI-EHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK---RIETVE-  102 (139)
Q Consensus        29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~-d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~---~~~~~~-  102 (139)
                      +++.+|--|+++| .+.++++.+- ..++++.+ +..+. .+.+.+.....     ...++.++..|...   ...++. 
T Consensus         4 ~gK~vlITGgs~G-IG~~~A~~la~~G~~vii~~r~~~~-~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~   76 (254)
T d1sbya1           4 TNKNVIFVAALGG-IGLDTSRELVKRNLKNFVILDRVEN-PTALAELKAIN-----PKVNITFHTYDVTVPVAESKKLLK   76 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTCCSEEEEEESSCC-HHHHHHHHHHC-----TTSEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCEEEEecCCCH-HHHHHHHHHHHCCCEEEEEECCccc-HHHHHHHHhhC-----CCCCEEEEEeecCCCHHHHHHHHH
Confidence            5677777766555 4555555552 23366555 44333 23332222221     12577788877752   122211 


Q ss_pred             -hhccCCceeEEecCcc
Q psy5757         103 -LMMKFDRYDFLPHAPA  118 (139)
Q Consensus       103 -~~~~~~~~D~vi~~~~  118 (139)
                       ....++++|++|.|..
T Consensus        77 ~~~~~~g~iDilvnnAG   93 (254)
T d1sbya1          77 KIFDQLKTVDILINGAG   93 (254)
T ss_dssp             HHHHHHSCCCEEEECCC
T ss_pred             HHHHHcCCCCEEEeCCC
Confidence             1223568999998875

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=81.20  E-value=1.3  Score=27.06  Aligned_cols=40  Identities=15%  Similarity=0.262  Sum_probs=25.9

Q ss_pred             CeEEEEccc--CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757          31 SKVLEIGSG--SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN   73 (139)
Q Consensus        31 ~~iLdiG~G--~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~   73 (139)
                      |+|.-||+|  -+.++..+.+..-   +|+++|.+++.++.+++.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~---~V~~~d~~~~~~~~a~~~   42 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGH---YLIGVSRQQSTCEKAVER   42 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCHHHHHHHHHT
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC---EEEEEECCchHHHHHHHh
Confidence            467777765  2233444444332   899999999888877653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=80.78  E-value=3.2  Score=23.25  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=24.6

Q ss_pred             CCCCCeEEEEc-ccCC--hhHHHHHHHcCCCceEEEEeCCH
Q psy5757          27 LNENSKVLEIG-SGSG--YLTNMISELMNSTGQVIGIEHVP   64 (139)
Q Consensus        27 ~~~~~~iLdiG-~G~G--~~~~~l~~~~~~~~~v~~~d~~~   64 (139)
                      ....+++.=+| ||+|  .++..+..+.-   +|.|.|...
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~---~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY---QISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC---EEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC---EEEEEeCCC
Confidence            45567888888 5566  44566666664   999999864

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=80.29  E-value=5.7  Score=25.87  Aligned_cols=81  Identities=11%  Similarity=0.069  Sum_probs=49.9

Q ss_pred             EEEEcccCChhHHHHHHHcCC-CceEEEEeC-CHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--hhcc
Q psy5757          33 VLEIGSGSGYLTNMISELMNS-TGQVIGIEH-VPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--LMMK  106 (139)
Q Consensus        33 iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~-~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~~~~  106 (139)
                      |+=|.-|+++.+..+++.+-. .++|+..+. +++.++.+.+.+...      ..++.++..|+.+.  ++++.  ....
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~------g~~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY------GGQAITFGGDVSKEADVEAMMKTAIDA   76 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH------TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc------CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            444445666777777776632 347776664 666777777666551      14677888888762  22221  1224


Q ss_pred             CCceeEEecCccc
Q psy5757         107 FDRYDFLPHAPAE  119 (139)
Q Consensus       107 ~~~~D~vi~~~~~  119 (139)
                      ++++|+++.|...
T Consensus        77 ~g~iDiLVnnAg~   89 (244)
T d1edoa_          77 WGTIDVVVNNAGI   89 (244)
T ss_dssp             SSCCSEEEECCCC
T ss_pred             cCCCCcccccccc
Confidence            5789999988753