Psyllid ID: psy5812

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
MSELQIIRIPDFNSENELESQIGNSDSEKLRLCHKKSATTERLANVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWADRAKKKPKAKEPTPLGNYIRLCIFS
cccccEEccccccccHHHHHHcccccccccEEcccccccccccccHHHHHHHHHHccccccccccccccEEEEEEEEEEEcccccccccEEEEEEEEEcEEEccccccccccccEEEcHHHccccccccEEEEcccccEEEEcccccEEEEEEcccEEEEEEEEEEEEEEccccccccccccccccEEEEcccccccEEEEEEcccEEcccccccccEEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEEcEEEHHHHHHHHHHHHHHHHHHccccccccccEEEHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccccccccccccccccc
cccEEEEEccccccccEccccccccccccccccccccccccccccHHHHHHHHHcccccEEccccccccEEEEEEEEEEEcccccccccEEEEEEEEEEEcccccccccccccccccccccHHHcccccEEEEEcccccEEEEccccEEEEEccccEEEEcccEEEEEcccccEEEcccccccEEEEEEEcccccccEEEEEEcccccccccccccEEEEEEccccEEEEEccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccEEEcc
mselqiiripdfnsenelesqignsdseklrlchkksatTERLANVTQTISQLLHGydirlrpnfggdplyvgmdLTIASFDSISEVSMDYTITMYLNQywkddrlafssedevltlsgdfaekiwvpdtffandknsflhdvternklvrlngdgsitygMRFTTTLACMmdlhyypldnqnctveieSYGYTVLDVVMYWketpvrgveeaqlpqftilghetndrkeklatgtYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTistgvrsslprisyvKAIDIYLVMCFVFVFAALLEYAAVNYSYWAdrakkkpkakeptplgnyirlcifs
mselqiiripdfnsenelesqignsdseklRLCHKKsatterlanVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEKIWVPDTFFANDKnsflhdvternklvrlngdgsityGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMttistgvrsslpriSYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWAdrakkkpkakeptplgnyirlcifs
MSELQIIRIPDFNSENELESQIGNSDSEKLRLCHKKSATTERLANVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVAlgittvltmttistgvRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWADRakkkpkakepTPLGNYIRLCIFS
****************************************ERLANVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWADR************LGNYIRLCIF*
*****I**IP*************************************QTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYS*********************IRLCIF*
MSELQIIRIPDFNSENELESQIGNSDSEKLRLCHKKSATTERLANVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWADR********EPTPLGNYIRLCIFS
*SELQIIRIPDFNSENELES*********************RLANVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWADRAKKKPKAKEPTPLGNYIRLCIFS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
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MSELQIIRIPDFNSENELESQIGNSDSEKLRLCHKKSATTERLANVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWADRAKKKPKAKEPTPLGNYIRLCIFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query365 2.2.26 [Sep-21-2011]
Q08832 496 Gamma-aminobutyric acid r yes N/A 0.854 0.629 0.848 1e-161
P26714 499 Gamma-aminobutyric acid r N/A N/A 0.846 0.619 0.735 1e-137
O18276 550 Gamma-aminobutyric acid r yes N/A 0.769 0.510 0.721 1e-120
P28472 473 Gamma-aminobutyric acid r yes N/A 0.879 0.678 0.585 1e-111
P63079 473 Gamma-aminobutyric acid r yes N/A 0.879 0.678 0.585 1e-111
P63080 473 Gamma-aminobutyric acid r yes N/A 0.879 0.678 0.585 1e-111
P24045 488 Gamma-aminobutyric acid r yes N/A 0.890 0.665 0.565 1e-110
P19019 476 Gamma-aminobutyric acid r no N/A 0.890 0.682 0.568 1e-110
P15431 474 Gamma-aminobutyric acid r no N/A 0.873 0.672 0.582 1e-109
P50571 474 Gamma-aminobutyric acid r no N/A 0.873 0.672 0.582 1e-109
>sp|Q08832|GBRB3_DROME Gamma-aminobutyric acid receptor subunit beta-like OS=Drosophila melanogaster GN=Lcch3 PE=1 SV=2 Back     alignment and function desciption
 Score =  568 bits (1463), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 275/324 (84%), Positives = 295/324 (91%), Gaps = 12/324 (3%)

Query: 29  KLRLCHKKSATTERLANVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVS 88
           +L  C +K     RL NVTQTIS +L GYDIRLRPNFGG+PL+VGMDLTIASFD+ISEV+
Sbjct: 23  QLIRCIRKDVLAGRLENVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVN 82

Query: 89  MDYTITMYLNQYWKDDRLAFSS-----EDE-------VLTLSGDFAEKIWVPDTFFANDK 136
           MDYTITMYLNQYW+D+RLAF+      +DE       VLTLSGDFAEKIWVPDTFFANDK
Sbjct: 83  MDYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDK 142

Query: 137 NSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVL 196
           NSFLHDVTERNKLVRL GDG++TYGMRFTTTLACMMDLHYYPLD+QNCTVEIESYGYTV 
Sbjct: 143 NSFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVS 202

Query: 197 DVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQ 256
           DVVMYWK TPVRGVE+A+LPQFTI+G+ETNDRKE+LATG YQRLSLSFKLQRNIGYFVFQ
Sbjct: 203 DVVMYWKPTPVRGVEDAELPQFTIIGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQ 262

Query: 257 TYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIY 316
           TYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIY
Sbjct: 263 TYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIY 322

Query: 317 LVMCFVFVFAALLEYAAVNYSYWA 340
           LVMCFVFVFAALLEYAAVNY+YW 
Sbjct: 323 LVMCFVFVFAALLEYAAVNYTYWG 346
GABA, an inhibitory neurotransmitter, mediates neuronal inhibition by binding to the GABA receptor and opening an integral chloride channel. Combines with the ligand-gated ion channel subunit GRD to form cation-selective GABA-gated ion channels when coexpressed in Xenopus laevis oocytes.
Drosophila melanogaster (taxid: 7227)
>sp|P26714|GBRB_LYMST Gamma-aminobutyric acid receptor subunit beta OS=Lymnaea stagnalis PE=2 SV=1 Back     alignment and function description
>sp|O18276|GBRB_CAEEL Gamma-aminobutyric acid receptor subunit beta OS=Caenorhabditis elegans GN=gab-1 PE=2 SV=3 Back     alignment and function description
>sp|P28472|GBRB3_HUMAN Gamma-aminobutyric acid receptor subunit beta-3 OS=Homo sapiens GN=GABRB3 PE=1 SV=1 Back     alignment and function description
>sp|P63079|GBRB3_RAT Gamma-aminobutyric acid receptor subunit beta-3 OS=Rattus norvegicus GN=Gabrb3 PE=1 SV=1 Back     alignment and function description
>sp|P63080|GBRB3_MOUSE Gamma-aminobutyric acid receptor subunit beta-3 OS=Mus musculus GN=Gabrb3 PE=2 SV=1 Back     alignment and function description
>sp|P24045|GBRB4_CHICK Gamma-aminobutyric acid receptor subunit beta-4 OS=Gallus gallus GN=GABRB4 PE=2 SV=1 Back     alignment and function description
>sp|P19019|GBRB3_CHICK Gamma-aminobutyric acid receptor subunit beta-3 OS=Gallus gallus GN=GABRB3 PE=2 SV=1 Back     alignment and function description
>sp|P15431|GBRB1_RAT Gamma-aminobutyric acid receptor subunit beta-1 OS=Rattus norvegicus GN=Gabrb1 PE=2 SV=1 Back     alignment and function description
>sp|P50571|GBRB1_MOUSE Gamma-aminobutyric acid receptor subunit beta-1 OS=Mus musculus GN=Gabrb1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
157954037 480 ligand-gated chloride channel homolog 3 0.846 0.643 0.912 1e-168
118150482 489 ligand-gated chloride channel homolog 3 0.846 0.631 0.909 1e-167
383863330 508 PREDICTED: LOW QUALITY PROTEIN: gamma-am 0.860 0.618 0.881 1e-167
307200307460 Gamma-aminobutyric acid receptor subunit 0.832 0.660 0.924 1e-166
350423047 489 PREDICTED: gamma-aminobutyric acid recep 0.846 0.631 0.902 1e-166
350536015 512 ligand-gated chloride channel homolog 3 0.852 0.607 0.898 1e-166
340727433 489 PREDICTED: gamma-aminobutyric acid recep 0.846 0.631 0.902 1e-166
332026036460 Gamma-aminobutyric acid receptor subunit 0.832 0.660 0.914 1e-164
357627557 478 ligand-gated chloride channel-like prote 0.838 0.640 0.892 1e-164
157127002 468 gamma-aminobutyric-acid receptor a beta 0.824 0.643 0.857 1e-160
>gi|157954037|ref|NP_001103251.1| ligand-gated chloride channel homolog 3 [Tribolium castaneum] gi|156447611|gb|ABU63598.1| GABA-gated ion channel [Tribolium castaneum] gi|270006356|gb|EFA02804.1| ligand-gated chloride channel homolog 3 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  597 bits (1538), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/309 (91%), Positives = 301/309 (97%)

Query: 35  KKSATTERLANVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTIT 94
           ++S  ++RL NVTQTIS+LL GYDIRLRPNFGG+PL VGMDLTIASFD+ISEV+MDYTIT
Sbjct: 24  QRSMVSDRLENVTQTISRLLEGYDIRLRPNFGGEPLLVGMDLTIASFDAISEVNMDYTIT 83

Query: 95  MYLNQYWKDDRLAFSSEDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNG 154
           MYLNQYWKD+RLAFS+E+E+LTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNG
Sbjct: 84  MYLNQYWKDERLAFSNEEEILTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNG 143

Query: 155 DGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAQ 214
           DG+ITYGMRFTTTLACMMDLHYYPLD+QNCTVEIESYGYTVLDVVMYWKETPVRGVEEA+
Sbjct: 144 DGAITYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAE 203

Query: 215 LPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWI 274
           LPQFTI+G+ETNDRKE+LATG YQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWI
Sbjct: 204 LPQFTIIGYETNDRKERLATGIYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWI 263

Query: 275 NHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAV 334
           NHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAV
Sbjct: 264 NHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAV 323

Query: 335 NYSYWADRA 343
           NY+YW  RA
Sbjct: 324 NYTYWGARA 332

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|118150482|ref|NP_001071280.1| ligand-gated chloride channel homolog 3 precursor [Apis mellifera] gi|110555512|gb|ABG75736.1| GABA-gated ion channel [Apis mellifera] Back     alignment and taxonomy information
>gi|383863330|ref|XP_003707134.1| PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyric acid receptor subunit beta-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307200307|gb|EFN80572.1| Gamma-aminobutyric acid receptor subunit beta-like [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|350423047|ref|XP_003493368.1| PREDICTED: gamma-aminobutyric acid receptor subunit beta-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|350536015|ref|NP_001234895.1| ligand-gated chloride channel homolog 3 precursor [Nasonia vitripennis] gi|269856291|gb|ACZ51428.1| GABA-gated ion channel [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|340727433|ref|XP_003402048.1| PREDICTED: gamma-aminobutyric acid receptor subunit beta-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|332026036|gb|EGI66187.1| Gamma-aminobutyric acid receptor subunit beta-like protein [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|357627557|gb|EHJ77210.1| ligand-gated chloride channel-like protein 3 [Danaus plexippus] Back     alignment and taxonomy information
>gi|157127002|ref|XP_001661036.1| gamma-aminobutyric-acid receptor a beta subunit 1, 2, 3, putative [Aedes aegypti] gi|108873057|gb|EAT37282.1| AAEL010710-PA [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
FB|FBgn0010240 496 Lcch3 "Ligand-gated chloride c 0.849 0.625 0.804 3.6e-137
WB|WBGene00001512 550 gab-1 [Caenorhabditis elegans 0.860 0.570 0.628 4.6e-105
UNIPROTKB|F5H7N0 529 GABRB3 "Gamma-aminobutyric aci 0.805 0.555 0.581 2.7e-93
UNIPROTKB|P28472 473 GABRB3 "Gamma-aminobutyric aci 0.805 0.621 0.581 2.7e-93
MGI|MGI:95621 473 Gabrb3 "gamma-aminobutyric aci 0.805 0.621 0.581 2.7e-93
RGD|2651 473 Gabrb3 "gamma-aminobutyric aci 0.805 0.621 0.581 2.7e-93
ZFIN|ZDB-GENE-101102-2 532 gabrb3 "gamma-aminobutyric aci 0.857 0.588 0.553 2.7e-93
UNIPROTKB|P24045 488 GABRB4 "Gamma-aminobutyric aci 0.841 0.629 0.550 2.4e-92
UNIPROTKB|P19019 476 GABRB3 "Gamma-aminobutyric aci 0.805 0.617 0.570 3.9e-92
ZFIN|ZDB-GENE-070424-211 512 si:dkey-169l5.3 "si:dkey-169l5 0.843 0.601 0.551 6.3e-92
FB|FBgn0010240 Lcch3 "Ligand-gated chloride channel homolog 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1343 (477.8 bits), Expect = 3.6e-137, P = 3.6e-137
 Identities = 259/322 (80%), Positives = 278/322 (86%)

Query:    33 CHKKSATTERLANVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYT 92
             C +K     RL NVTQTIS +L GYDIRLRPNFGG+PL+VGMDLTIASFD+ISEV+MDYT
Sbjct:    27 CIRKDVLAGRLENVTQTISNILQGYDIRLRPNFGGEPLHVGMDLTIASFDAISEVNMDYT 86

Query:    93 ITMYLNQYWKDDRLAFSS-----EDE-------VLTLSGDFAEKIWVPDTFFANDKNSFL 140
             ITMYLNQYW+D+RLAF+      +DE       VLTLSGDFAEKIWVPDTFFANDKNSFL
Sbjct:    87 ITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKNSFL 146

Query:   141 HDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVM 200
             HDVTERNKLVRL GDG++TYGMRFTTTLACMMDLHYYPLD+QNCTVEIESYGYTV DVVM
Sbjct:   147 HDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSDVVM 206

Query:   201 YWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLP 260
             YWK TPVRGVE+A+LPQFTI+G+ETNDRKE+LATG YQRLSLSFKLQRNIGYFVFQTYLP
Sbjct:   207 YWKPTPVRGVEDAELPQFTIIGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVFQTYLP 266

Query:   261 SILIVMLSWVSFWINHEATSARVAXXXXXXXXXXXXXXXXRSSLPRISYVKAIDIYLVMC 320
             SILIVMLSWVSFWINHEATSARVA                RSSLPRISYVKAIDIYLVMC
Sbjct:   267 SILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMC 326

Query:   321 FVFVFAALLEYAAVNYSYWADR 342
             FVFVFAALLEYAAVNY+YW  R
Sbjct:   327 FVFVFAALLEYAAVNYTYWGKR 348
GO:0005886 "plasma membrane" evidence=IDA
GO:0004890 "GABA-A receptor activity" evidence=NAS;IDA
GO:0016021 "integral to membrane" evidence=IEA;NAS
GO:0006811 "ion transport" evidence=IEA
GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA
GO:0045211 "postsynaptic membrane" evidence=IEA
WB|WBGene00001512 gab-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F5H7N0 GABRB3 "Gamma-aminobutyric acid receptor subunit beta-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P28472 GABRB3 "Gamma-aminobutyric acid receptor subunit beta-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:95621 Gabrb3 "gamma-aminobutyric acid (GABA) A receptor, subunit beta 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2651 Gabrb3 "gamma-aminobutyric acid (GABA) A receptor, beta 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-101102-2 gabrb3 "gamma-aminobutyric acid (GABA) A receptor, beta 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P24045 GABRB4 "Gamma-aminobutyric acid receptor subunit beta-4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P19019 GABRB3 "Gamma-aminobutyric acid receptor subunit beta-3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070424-211 si:dkey-169l5.3 "si:dkey-169l5.3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O18276GBRB_CAEELNo assigned EC number0.72180.76980.5109yesN/A
P63079GBRB3_RATNo assigned EC number0.58510.87940.6786yesN/A
P24045GBRB4_CHICKNo assigned EC number0.56570.89040.6659yesN/A
P63080GBRB3_MOUSENo assigned EC number0.58510.87940.6786yesN/A
Q08832GBRB3_DROMENo assigned EC number0.84870.85470.6290yesN/A
P28472GBRB3_HUMANNo assigned EC number0.58510.87940.6786yesN/A
P26714GBRB_LYMSTNo assigned EC number0.73520.84650.6192N/AN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
TIGR00860 459 TIGR00860, LIC, Cation transporter family protein 1e-154
pfam02931215 pfam02931, Neur_chan_LBD, Neurotransmitter-gated i 2e-58
pfam02932 228 pfam02932, Neur_chan_memb, Neurotransmitter-gated 2e-42
>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein Back     alignment and domain information 
 Score =  442 bits (1138), Expect = e-154
 Identities = 146/320 (45%), Positives = 199/320 (62%), Gaps = 6/320 (1%)

Query: 33  CHKKSATTERLANVT-QTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDY 91
                     L  V  + + +LL  YD R+RP FGG P+ V  +L + S   + E +MDY
Sbjct: 17  VSLAGNAKSNLKEVERKLLDELLKNYDARVRPVFGGPPVTVSFNLFLRSIMDVDEKNMDY 76

Query: 92  TITMYLNQYWKDDRLAFS-SEDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLV 150
           T  ++L Q W D+RL ++  E   +TL     + IWVPD FF N+K++  H +T  N LV
Sbjct: 77  TTNIWLRQEWTDERLQWNPEEYPGVTLVRTPDDSIWVPDIFFYNEKDARFHGITMTNVLV 136

Query: 151 RLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKET-PVRG 209
           R++ +GS+ Y  R T TLAC MDL  +P D QNC+++ ES+GYT  D+ + WKE   V+ 
Sbjct: 137 RIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEWKEQGAVQV 196

Query: 210 VEEAQ--LPQFTILGH-ETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVM 266
            +     LP+F +LG   T     +  TG Y  L+ SF L+R   Y++ Q Y+PSILIV+
Sbjct: 197 DDSLFISLPEFELLGVYGTRYCTSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVI 256

Query: 267 LSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFA 326
           LSWVSFW+  +A+ ARV+LGITT+LTMTT S+GVR SLP +SYVKAID+Y  +C  FVF 
Sbjct: 257 LSWVSFWLPADASGARVSLGITTLLTMTTFSSGVRESLPAVSYVKAIDVYFAVCMAFVFL 316

Query: 327 ALLEYAAVNYSYWADRAKKK 346
           ALLE A VNY +  D A+ K
Sbjct: 317 ALLETAFVNYVHHKDPAQGK 336

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459
>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain Back     alignment and domain information
>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 365
KOG3643|consensus 459 100.0
TIGR00860 459 LIC Cation transporter family protein. selective w 100.0
KOG3646|consensus 486 100.0
KOG3644|consensus457 100.0
KOG3642|consensus 466 100.0
KOG3645|consensus449 100.0
PF02931217 Neur_chan_LBD: Neurotransmitter-gated ion-channel 100.0
PF02932 237 Neur_chan_memb: Neurotransmitter-gated ion-channel 99.54
PF14494256 DUF4436: Domain of unknown function (DUF4436) 96.27
>KOG3643|consensus Back     alignment and domain information 
Probab=100.00  E-value=6e-66  Score=469.47  Aligned_cols=303  Identities=57%  Similarity=1.011  Sum_probs=291.3

Q ss_pred             cccccchHHHHHHHHhhCCCCCCCCCCCCCceEEEEEEEEeeeccccccccceeeeeEEEeEEeccccccc-CCCCeEEe
Q psy5812          39 TTERLANVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFS-SEDEVLTL  117 (365)
Q Consensus        39 ~~~~~~~~~~L~~~Ll~~Yd~~~rP~~~~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn-~~~~~i~~  117 (365)
                      +..+..+.++.+++|+++||..+||..+|+|+.|.+.++|.+|..|+|.++.+++++|+++.|+||||+|+ ++.+++++
T Consensus        28 ~~~~~~~~~~~ld~l~~~yd~~lRP~fGG~pv~Vgi~i~VaSI~~vSEV~MDyTlt~y~rq~W~D~RLay~~~~~~slTl  107 (459)
T KOG3643|consen   28 SHGNTQLVSSVLDRLLNGYDYRLRPNFGGPPVDVGITIHVASIDAVSEVNMDYTLTMYLRQTWRDPRLAYSSKNIDSLTL  107 (459)
T ss_pred             cccchhhHHHHHHHHhhcCceecCCCCCCCCeEEEEEEEEeeechhccccchhhhhhhhhhhhcCcccccCCCCCceEEE
Confidence            34455789999999999999999999999999999999999999999999999999999999999999999 58889999


Q ss_pred             cccccCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeecccccee
Q psy5812         118 SGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLD  197 (365)
Q Consensus       118 ~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~  197 (365)
                      ..-..++||.||.+|.|++++.+|..+.++..+|+++||+|.++.|++.++.|+||+++||+|+|+|.+.++||+|+.++
T Consensus       108 ~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~RlT~Ta~C~MDL~~fPmD~Q~C~LeiESYGYt~~D  187 (459)
T KOG3643|consen  108 DVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSIRLTVTAACPMDLKLFPMDSQNCKLEIESYGYTTDD  187 (459)
T ss_pred             chhhhhccccCceecccCcccccceeeecceEEEEcCCCeEEEEEEEEEEEecccccccCCCcccceeEEEEeccccccc
Confidence            98889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecC--CcccccccccCCceeeceeeeeeeeecCCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeee
Q psy5812         198 VVMYWKET--PVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWIN  275 (365)
Q Consensus       198 v~l~~~~~--~~~~~~~~~~~~w~l~~~~~~~~~~~~~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~  275 (365)
                      +.+.|..+  .+...++.+++++.+.+.........+.+|.|+++.++|.++|+.+||++++++|+.+++++||++||+.
T Consensus       188 I~y~W~~g~~av~~~e~i~LpqFti~~~~~~s~~~~~sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin  267 (459)
T KOG3643|consen  188 IEYYWSKGDNAVKGDEKIELPQFTITEYHVTSRLVSFSTGNYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWIN  267 (459)
T ss_pred             EEEEEcCCCccccceeeeeccceEEEEEEEEEEEEEEccccceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhc
Confidence            99999965  5677788999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccEEEehhHHHHHHHhhhhhhccCCCCCcccchhhhhhHHHHHHHHHHHHhhheeeeeecc
Q psy5812         276 HEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWAD  341 (365)
Q Consensus       276 ~~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~~~~i~~~~~~~~~~~~~~li~~~iv~~~~~~~  341 (365)
                      .++.++|+.+|+|++|+|+.+...+++.||+++|+.+||+|+.+|++++|+|++|++++++...++
T Consensus       268 ~~a~pARv~lGITTVLTMTTl~t~~n~slPrvSYVKAiDiYL~vCFvfVF~sLLEYA~V~Y~~~~~  333 (459)
T KOG3643|consen  268 RDASPARVALGITTVLTMTTLMTSTNESLPRVSYVKAIDVYLGVCFVFVFLSLLEYAAVNYMFKRR  333 (459)
T ss_pred             cccchhheeeceehHHhHHHHHhhhhccCCCccceeeehhhhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999999999999999999999987655

>TIGR00860 LIC Cation transporter family protein Back     alignment and domain information
>KOG3646|consensus Back     alignment and domain information
>KOG3644|consensus Back     alignment and domain information
>KOG3642|consensus Back     alignment and domain information
>KOG3645|consensus Back     alignment and domain information
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>PF14494 DUF4436: Domain of unknown function (DUF4436) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
3rhw_A347 C. Elegans Glutamate-Gated Chloride Channel (Glucl) 3e-52
3ei0_A317 Structure Of The E221a Mutant Of The Gloebacter Vio 3e-14
3eam_A317 An Open-Pore Structure Of A Bacterial Pentameric Li 5e-14
3ehz_A317 X-Ray Structure Of The Pentameric Ligand Gated Ion 5e-14
3p4w_A318 Structure Of Desflurane Bound To A Pentameric Ligan 5e-14
4ilc_A320 The Glic Pentameric Ligand-gated Ion Channel In Com 6e-14
3tlw_A321 The Glic Pentameric Ligand-Gated Ion Channel Loop2- 6e-14
2xq9_A317 Pentameric Ligand Gated Ion Channel Glic Mutant E22 6e-14
3uu3_A321 The Glic Pentameric Ligand-Gated Ion Channel Loop2- 6e-14
4il9_A320 The Pentameric Ligand-gated Ion Channel Glic A237f 7e-14
3tlt_A321 The Glic Pentameric Ligand-Gated Ion Channel H11'f 7e-14
3lsv_A317 Structure Of The A237f Mutant Of The Pentameric Lig 7e-14
3tls_A321 The Glic Pentameric Ligand-Gated Ion Channel E19'p 9e-14
3tlv_A321 The Glic Pentameric Ligand-Gated Ion Channel Loop2- 1e-13
3tlu_A321 The Glic Pentameric Ligand-Gated Ion Channel Loop2- 1e-13
4aq5_B 493 Gating Movement In Acetylcholine Receptor Analysed 3e-13
2bg9_B370 Refined Structure Of The Nicotinic Acetylcholine Re 8e-13
3uq5_A324 X-Ray Structure Of A Pentameric Ligand Gated Ion Ch 2e-12
3uq7_A324 X-Ray Structure Of A Pentameric Ligand Gated Ion Ch 2e-12
3uq4_A324 X-Ray Structure Of A Pentameric Ligand Gated Ion Ch 2e-12
3rqu_A322 Crystal Structure Of A Prokaryotic Pentameric Ligan 2e-12
4a97_A307 X-Ray Structure Of A Pentameric Ligand Gated Ion Ch 2e-12
2yks_A321 Pentameric Ligand Gated Ion Channel Elic Mutant F24 7e-12
2vl0_A321 X-Ray Structure Of A Pentameric Ligand Gated Ion Ch 8e-12
2bg9_C369 Refined Structure Of The Nicotinic Acetylcholine Re 2e-11
1vry_A76 Second And Third Transmembrane Domains Of The Alpha 3e-10
4aq5_C 522 Gating Movement In Acetylcholine Receptor Analysed 5e-10
2bg9_E370 Refined Structure Of The Nicotinic Acetylcholine Re 4e-08
4aq5_E 488 Gating Movement In Acetylcholine Receptor Analysed 4e-08
3igq_A201 Crystal Structure Of The Extracellular Domain Of A 4e-06
2bg9_A370 Refined Structure Of The Nicotinic Acetylcholine Re 5e-04
4aq5_A 461 Gating Movement In Acetylcholine Receptor Analysed 5e-04
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347 Back     alignment and structure 
Iteration: 1

 Score =  202 bits (513), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 101/292 (34%), Positives = 166/292 (56%), Gaps = 16/292 (5%)
Query: 56  GYDIRLRPNF-GGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDE- 113
           GYD R+RP    G P+ V +++ + +   I  V+M+Y+  + L + W D RL++  + + 
Sbjct: 13  GYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDG 72
Query: 114 -----VLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTL 168
                +LT+      +IW+PDTFF N+K ++ H + + N L+R++ DG++ Y +R +  L
Sbjct: 73  QPDFVILTV----GHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVL 128
Query: 169 ACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKE-TPVR---GVEEAQLPQFTILGHE 224
           +C M L YYP+D Q C++++ SY YT  D+   WKE +P++   G+  + LP F +    
Sbjct: 129 SCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSS-LPSFQLTNTS 187
Query: 225 TNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVA 284
           T        TG Y  L  + +L+R   +++ Q Y+PS ++V++SWVSFW +  A  ARV 
Sbjct: 188 TTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVT 247
Query: 285 XXXXXXXXXXXXXXXXRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
                            S LP +SY+KAID+++  C  F+F ALLE+A VN+
Sbjct: 248 LGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNH 299
>pdb|3EI0|A Chain A, Structure Of The E221a Mutant Of The Gloebacter Violaceus Pentameric Ligand Gated Ion Channnel (Glic) Length = 317 Back     alignment and structure
>pdb|3EAM|A Chain A, An Open-Pore Structure Of A Bacterial Pentameric Ligand- Gated Ion Channel Length = 317 Back     alignment and structure
>pdb|3EHZ|A Chain A, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel Of Gloebacter Violaceus (Glic) In A Presumptive Open Conformation Length = 317 Back     alignment and structure
>pdb|3P4W|A Chain A, Structure Of Desflurane Bound To A Pentameric Ligand-Gated Ion Channel, Glic Length = 318 Back     alignment and structure
>pdb|4ILC|A Chain A, The Glic Pentameric Ligand-gated Ion Channel In Complex With Sulfates Length = 320 Back     alignment and structure
>pdb|3TLW|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21' Oxidized Mutant In A Locally-Closed Conformation (Lc2 Subtype) Length = 321 Back     alignment and structure
>pdb|2XQ9|A Chain A, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In Complex With Tetraethylarsonium (Teas) Length = 317 Back     alignment and structure
>pdb|3UU3|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20' Oxidized Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321 Back     alignment and structure
>pdb|4IL9|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In Complex With Bromide Length = 320 Back     alignment and structure
>pdb|3TLT|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321 Back     alignment and structure
>pdb|3LSV|A Chain A, Structure Of The A237f Mutant Of The Pentameric Ligand Gated Channel From Gloeobacter Violaceus Length = 317 Back     alignment and structure
>pdb|3TLS|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant In A Locally-Closed Conformation (Lc2 Subtype) Length = 321 Back     alignment and structure
>pdb|3TLV|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22' Oxidized Mutant In A Locally-Closed Conformation (Lc3 Subtype) Length = 321 Back     alignment and structure
>pdb|3TLU|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24' Oxidized Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321 Back     alignment and structure
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493 Back     alignment and structure
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|3UQ5|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a F16l) In The Presence Of 10 Mm Cysteamine Length = 324 Back     alignment and structure
>pdb|3UQ7|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s F16l) In Presence Of 10 Mm Cysteamine Length = 324 Back     alignment and structure
>pdb|3UQ4|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l) Length = 324 Back     alignment and structure
>pdb|3RQU|A Chain A, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated Ion Channel, Elic Length = 322 Back     alignment and structure
>pdb|4A97|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) In Complex With Zopiclone Length = 307 Back     alignment and structure
>pdb|2YKS|A Chain A, Pentameric Ligand Gated Ion Channel Elic Mutant F246a Length = 321 Back     alignment and structure
>pdb|2VL0|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Length = 321 Back     alignment and structure
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 369 Back     alignment and structure
>pdb|1VRY|A Chain A, Second And Third Transmembrane Domains Of The Alpha-1 Subunit Of Human Glycine Receptor Length = 76 Back     alignment and structure
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 522 Back     alignment and structure
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 488 Back     alignment and structure
>pdb|3IGQ|A Chain A, Crystal Structure Of The Extracellular Domain Of A Bacterial Pentameric Ligand-Gated Ion Channel Length = 201 Back     alignment and structure
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370 Back     alignment and structure
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 461 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 1e-138
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 1e-136
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 1e-133
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 2e-87
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 7e-32
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 5e-31
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 9e-31
4aq5_A 461 Acetylcholine receptor subunit alpha; membrane pro 5e-30
4aq5_B 493 Acetylcholine receptor beta subunit; membrane prot 2e-29
4aq5_E 488 Acetylcholine receptor gamma subunit; membrane pro 7e-29
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 3e-27
1vry_A76 Glycine receptor alpha-1 chain; second transmembra 4e-27
4aq5_C 522 Acetylcholine receptor delta subunit; membrane pro 6e-25
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 2e-19
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 4e-17
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 5e-17
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 2e-16
4afh_A230 ACHBP; acetylcholine-binding protein, nicotinic re 3e-14
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 1e-12
1mot_A28 Glycine receptor alpha-1 chain; second transmembra 2e-09
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 2e-08
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 4e-08
1oed_E 260 Acetylcholine receptor protein, gamma chain; ION c 9e-07
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 1e-06
1oed_B 250 Acetylcholine receptor protein, beta chain; ION ch 9e-06
1oed_C 260 Acetylcholine receptor protein, delta chain; ION c 4e-05
1oed_A 227 Acetylcholine receptor protein, alpha chain; ION c 4e-05
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321 Back     alignment and structure
 Score =  394 bits (1014), Expect = e-138
 Identities = 61/297 (20%), Positives = 122/297 (41%), Gaps = 9/297 (3%)

Query: 55  HGYDIRLRP-NFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDE 113
              D+   P     +PL V   + +    S+ + +  + +  +L+  WKD RLAF     
Sbjct: 4   AAQDMVSPPPPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRS 63

Query: 114 VLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMD 173
            + +     E IW+P+  F N +N+   DV      + ++ DG++ Y  RF+  +   +D
Sbjct: 64  GVRVKTYEPEAIWIPEIRFVNVENARDADVV----DISVSPDGTVQYLERFSARVLSPLD 119

Query: 174 LHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLA 233
              YP D+Q   + +        ++V+      V   ++  L  + I       +    A
Sbjct: 120 FRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFA 179

Query: 234 TGT--YQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVL 291
                  +L    ++ R    ++    LP + I+ +SW +FW    +  A V L ++T++
Sbjct: 180 LEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWS--TSYEANVTLVVSTLI 237

Query: 292 TMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWADRAKKKPK 348
                +  V + LP+  Y+      + M ++F F A++E    +Y     +  +   
Sbjct: 238 AHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAAS 294
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347 Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322 Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201 Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461 Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493 Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488 Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369 Back     alignment and structure
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Length = 76 Back     alignment and structure
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522 Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212 Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Length = 228 Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Length = 211 Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204 Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* Length = 230 Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Length = 203 Back     alignment and structure
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Length = 28 Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Length = 164 Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Length = 137 Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260 Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Length = 140 Back     alignment and structure
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Length = 250 Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260 Back     alignment and structure
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Length = 227 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 100.0
4aq5_A 461 Acetylcholine receptor subunit alpha; membrane pro 100.0
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 100.0
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 100.0
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 100.0
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 100.0
4aq5_E 488 Acetylcholine receptor gamma subunit; membrane pro 100.0
4aq5_B 493 Acetylcholine receptor beta subunit; membrane prot 100.0
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 100.0
4aq5_C 522 Acetylcholine receptor delta subunit; membrane pro 100.0
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 100.0
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 100.0
4aoe_A205 Acetylcholine-binding protein type 2; ligand gated 100.0
4aod_A205 Acetylcholine-binding protein type 1; ligand gated 100.0
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 100.0
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 100.0
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 100.0
4afh_A230 ACHBP; acetylcholine-binding protein, nicotinic re 100.0
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 100.0
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 100.0
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 99.85
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 99.81
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 99.78
1oed_A 227 Acetylcholine receptor protein, alpha chain; ION c 99.68
1oed_B 250 Acetylcholine receptor protein, beta chain; ION ch 99.67
1oed_E 260 Acetylcholine receptor protein, gamma chain; ION c 99.66
1oed_C 260 Acetylcholine receptor protein, delta chain; ION c 99.65
1vry_A76 Glycine receptor alpha-1 chain; second transmembra 99.3
1mot_A28 Glycine receptor alpha-1 chain; second transmembra 89.87
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Back     alignment and structure
Probab=100.00  E-value=3.9e-66  Score=486.96  Aligned_cols=298  Identities=37%  Similarity=0.762  Sum_probs=272.4

Q ss_pred             HHHHHHHHh-hCCCCCCCCCCC-CCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEecc-cc
Q psy5812          46 VTQTISQLL-HGYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSG-DF  121 (365)
Q Consensus        46 ~~~L~~~Ll-~~Yd~~~rP~~~-~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~-~~  121 (365)
                      +++|+++|| ++||+.+||+.+ ++|+.|.+++.+.+|.++||++|++++++|++++|+|+||+||| +++++.... .+
T Consensus         2 ~~~L~~~Ll~~~Yd~~~RP~~~~~~~v~V~~~l~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~~   81 (347)
T 3rhw_A            2 DSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTV   81 (347)
T ss_dssp             HHHHHHHHHHSCCCTTSCCCCSSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCSSTTCSSSCSEEECCT
T ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCCcEEEEEEEEEEeeccccccceeEEEEEEEeeEEECcccCCCCccCCCceEEEecc
Confidence            689999999 999999999986 68999999999999999999999999999999999999999999 455443322 25


Q ss_pred             cCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEE
Q psy5812         122 AEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMY  201 (365)
Q Consensus       122 ~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~  201 (365)
                      .++||+||++++|++++..+.....+..++|++||+|.|.++.+.++.|++|+++||||+|+|+++|+||.|+.+++++.
T Consensus        82 ~~~IW~PDi~l~N~~~~~~~~~~~~n~~v~i~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~  161 (347)
T 3rhw_A           82 GHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYL  161 (347)
T ss_dssp             TCCCCCCCEECTTEEEEEECCSSSCSEEEEEETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEE
T ss_pred             hhceecCCEeeeccccccccccccccEEEEEeCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEE
Confidence            79999999999999988777666677788999999999999999999999999999999999999999999999999999


Q ss_pred             eecC-Cccccc--ccccCCceeeceeeeeeeeecCCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeeeCCC
Q psy5812         202 WKET-PVRGVE--EAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEA  278 (365)
Q Consensus       202 ~~~~-~~~~~~--~~~~~~w~l~~~~~~~~~~~~~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~~~  278 (365)
                      |..+ +....+  ....+||++.+.....+...+.++.|+++.+.++++|+++||++++++||++++++++++||+|+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~  241 (347)
T 3rhw_A          162 WKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTA  241 (347)
T ss_dssp             ECSSCSEEECTTSGGGCCSEEEEEEEEEECCEECSSCEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTC
T ss_pred             ecCCCceeecCcceeEccceEEeeEEeeEeeeeecccceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCC
Confidence            9765 333333  5678999999988777777778899999999999999999999999999999999999999999999


Q ss_pred             CCccEEEehhHHHHHHHhhhhhhccCCCCCcccchhhhhhHHHHHHHHHHHHhhheeeeeecccc
Q psy5812         279 TSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWADRA  343 (365)
Q Consensus       279 ~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~~~~i~~~~~~~~~~~~~~li~~~iv~~~~~~~~~  343 (365)
                      +++|+++|+|+||++++++..+++.+|+++|+|+||+|+.+|+++++++++++++++++.+++++
T Consensus       242 ~~~Rv~lgit~lLt~tv~~~~~~~~lP~~S~v~~id~~~~~~~~~v~~slle~~~v~~l~~~~~~  306 (347)
T 3rhw_A          242 IPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTT  306 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH
T ss_pred             CcceEEEEeehHHHHHHHHHHHHhhCCCccceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            77999999999999999999999999999999999999999999999999999999999887764
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Back     alignment and structure
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A* Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Back     alignment and structure
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata} Back     alignment and structure
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata} Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A* Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A* Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Back     alignment and structure
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Back     alignment and structure
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Back     alignment and structure
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Back     alignment and structure
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 365
d1uw6a_208 b.96.1.1 (A:) Acetylcholine binding protein (ACHBP 1e-28
d1oede_ 260 f.36.1.1 (E:) Acetylcholine receptor protein, gamm 3e-23
d1oedb_ 250 f.36.1.1 (B:) Acetylcholine receptor protein, beta 6e-21
d1oeda_ 227 f.36.1.1 (A:) Acetylcholine receptor protein, alph 7e-21
d1oedc_ 260 f.36.1.1 (C:) Acetylcholine receptor protein, delt 1e-20
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208 Back     information, alignment and structure

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

 Score =  108 bits (270), Expect = 1e-28
 Identities = 34/205 (16%), Positives = 72/205 (35%), Gaps = 12/205 (5%)

Query: 51  SQLLHGYDIRLRPNF----GGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRL 106
           + +L+      RP+        P+ V + L   +   ++E++ +  +  +    W D  L
Sbjct: 5   ADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTL 64

Query: 107 AFSSEDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTT 166
           A++S              +WVPD    N  +          +L R+  DG + Y      
Sbjct: 65  AWNSSHSP-DQVSVPISSLWVPDLAAYNAISKPEVL---TPQLARVVSDGEVLYMPSIRQ 120

Query: 167 TLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWK-ETPVRGVEEAQLPQFTILG--H 223
             +C +           C ++I S+ +   ++ +    E        +Q  +F IL    
Sbjct: 121 RFSCDVSGVDTE-SGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQ 179

Query: 224 ETNDRKEKLATGTYQRLSLSFKLQR 248
           + N          Y+ + +S   ++
Sbjct: 180 KKNSVTYSCCPEAYEDVEVSLNFRK 204
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250 Back     information, alignment and structure
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227 Back     information, alignment and structure
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
d1uw6a_208 Acetylcholine binding protein (ACHBP) {Great pond 100.0
d1oede_ 260 Acetylcholine receptor protein, gamma chain {Marbl 99.7
d1oedc_ 260 Acetylcholine receptor protein, delta chain {Marbl 99.67
d1oeda_ 227 Acetylcholine receptor protein, alpha chain {Marbl 99.66
d1oedb_ 250 Acetylcholine receptor protein, beta chain {Marble 99.65
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Back     information, alignment and structure
class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

Probab=100.00  E-value=1.2e-38  Score=275.18  Aligned_cols=201  Identities=15%  Similarity=0.245  Sum_probs=170.7

Q ss_pred             hHHHHHHHHhhCCCCCCCCCCCCCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEecccccC
Q psy5812          45 NVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSGDFAE  123 (365)
Q Consensus        45 ~~~~L~~~Ll~~Yd~~~rP~~~~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~~~~~  123 (365)
                      ++++|+.++.+.++|.++|..+++|+.|.+++.+.+|.++||++|++++++|++|+|+|+||+||| ++.++.  .++.+
T Consensus         3 ~~~dll~~y~~~~rP~~~P~~~~~pv~V~~~l~l~~i~~vde~~q~~~~~~~~~~~W~D~rL~Wnp~~~~~~~--~v~~~   80 (208)
T d1uw6a_           3 DRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQV--SVPIS   80 (208)
T ss_dssp             CHHHHHHHHHHHCCTTSCCCCTTCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCSEE--EEEGG
T ss_pred             cHHHhHhccccccCCCcCCcCCCCCEEEEEEEEEEeEeeecccCCEEEEEEEEEEEEECCccccccccCCcee--ccchh
Confidence            567788888888888888877788999999999999999999999999999999999999999999 544432  34589


Q ss_pred             cccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEEee
Q psy5812         124 KIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWK  203 (365)
Q Consensus       124 ~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~~  203 (365)
                      +||+||++++|+++...   ......+.|++||+|.|.++++.++.|++++..|| |+|+|.|.|+||.|+..++.+.+.
T Consensus        81 ~iW~PDi~l~n~~~~~~---~~~~~~~~v~~~G~V~~~~~~~~~~~C~~~~~~f~-d~Q~C~l~fgSw~y~~~~i~l~~~  156 (208)
T d1uw6a_          81 SLWVPDLAAYNAISKPE---VLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTE-SGATCRIKIGSWTHHSREISVDPT  156 (208)
T ss_dssp             GSCCCCEEETTBCSCCE---ECSCCEEEEETTSEEEECCEEEEEEECCCTTTTSS-SCEEEEEEEEESSCCTTTEEEEEC
T ss_pred             ccccccEEEEEEccccc---cccceEEEEEeCCcEEEEecEEEEEeccccccCCc-ceEEEEEEEeCceeccceEEEeec
Confidence            99999999999887543   22345578999999999999999999999987777 799999999999999999999987


Q ss_pred             cCCcc-cccccccCCceeeceeeeeeeeecC--CCceeeeEEEEEEEeecc
Q psy5812         204 ETPVR-GVEEAQLPQFTILGHETNDRKEKLA--TGTYQRLSLSFKLQRNIG  251 (365)
Q Consensus       204 ~~~~~-~~~~~~~~~w~l~~~~~~~~~~~~~--~~~ys~l~~~~~l~R~~~  251 (365)
                      .+... ......++||++.++...+....|.  +++|+.+.+.|+|+|++.
T Consensus       157 ~~~~~~~~~~~~~~eW~l~~~~~~~~~~~y~cc~~~y~~i~~~i~lrRr~~  207 (208)
T d1uw6a_         157 TENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGR  207 (208)
T ss_dssp             CCSSCTTTTSCTTSSEEEEEEEEEEEEEECTTCSSEEEEEEEEEEEEECCC
T ss_pred             cCCCccccccccCCCEEEEEeEEEEEEEEeCCCCCCcceEEEEEEEEECCC
Confidence            66543 3344678999999998877665554  678999999999999974
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure