Psyllid ID: psy5854

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSACTVSSTSLTFNDILPEDPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSDLPKPPEPAKQDKIFELAAKENARLLTGQPMIPPNHQQAQRNLAQRARTRAINIDRFSRVFFPVLFAILNCTYWIMFAEFL
ccEEEEEEEEEEccccccccccccccccEEEcccccccccEEEEEcccccEEEccccccccEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEEccEEEEEEEEccEEEEEEEEEccccccccccccEEHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccEEEEEEEEEEEcccccccccccccccEEccHHHcccccccccEEEccccEEEEcccccccEEEEEEccEEEEEEEEEEccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccHHHHHHHccEEEccEEEEEHHHHHHHHHHHEEEEEEEcc
cEEEEEEEEEEccccccccccccccccEEEEEEcccccccEEEEEcccccEEEEcccEccEEEEEEEEEEEEEEEEccccEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccccccEEEEEEEEEEcccccccccccEEEEEEEEEEccccHHccccccccccccccHHHHHHccccccEEEcccccEEcccccccEEEEEccccEEEEEEEEEEEEccccccccccccccccEEEEEcccccEEEEEEccccEEEEccccccccHHEccccccccccccEEccccccEEEEEEHHHHHHHEEEEEEEHHcc
MTSEYRLTLKLSCAmnfmiyphdtqecslqmeslshttddlifqwdpemplavdekielpqlqlvknktadcsqvystgnftCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSfwikpeaaparVTLGVTSLLTLSTqhaksqaslppvsYLKAVDAFMSActvsstsltfndilpedpklydkmrppkkegqptiVYFHVTVMGldsidensmTYAADIFFAQTWKdhrlrlpenmtsEYRLLEVDWlknmwrpdsffknakavtfqtmtipnhyvwlykdKTILYMVKFVFMALMEYCLVNIvlgdsdlpkppepakqDKIFELAAKENARlltgqpmippnhQQAQRNLAQRARTRAInidrfsrvFFPVLFAILNCTYWIMFAEFL
MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSACTvsstsltfndilpedpklYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSDLPKPPEPAKQDKIFELAAKENARLLTGQPMIPPNHQQAQRNLAQRARTRAINIDRFSRVFFPVLFAILNCTYWIMFAEFL
MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARvtlgvtslltlstQHAKSQASLPPVSYLKAVDAFMSACTVSSTSLTFNDILPEDPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSDLPKPPEPAKQDKIFELAAKENARLLTGQPMIPPNHqqaqrnlaqrartraINIDRFSRVFFPVLFAILNCTYWIMFAEFL
****YRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQH*****SLPPVSYLKAVDAFMSACTVSSTSLTFNDIL*******************TIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLG**************************************************TRAINIDRFSRVFFPVLFAILNCTYWIMFAE**
MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSACTVSSTSLTFNDILPEDPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSDLPKPPEPAKQDKIFELAAKENA*************************TRAINIDRFSRVFFPVLFAILNCTYWIMFAEFL
MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLS**********PPVSYLKAVDAFMSACTVSSTSLTFNDILPEDPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSDLPKPPEPAKQDKIFELAAKENARLLTGQPMIPPN***********ARTRAINIDRFSRVFFPVLFAILNCTYWIMFAEFL
MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSACTVSSTSLTFNDILPEDPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSDLPKPPEPAKQDKIFELAAKENARLLTGQPMIPPNHQQAQRNLAQRARTRAINIDRFSRVFFPVLFAILNCTYWIMFAEFL
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MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLVKNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSACTVSSTSLTFNDILPEDPKLYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYCLVNIVLGDSDLPKPPEPAKQDKIFELAAKENARLLTGQPMIPPNHQQAQRNLAQRARTRAINIDRFSRVFFPVLFAILNCTYWIMFAEFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query392 2.2.26 [Sep-21-2011]
P24524464 Glycine receptor subunit yes N/A 0.405 0.342 0.537 1e-45
Q91XP5464 Glycine receptor subunit yes N/A 0.405 0.342 0.537 1e-45
O75311464 Glycine receptor subunit yes N/A 0.405 0.342 0.537 1e-45
P23416452 Glycine receptor subunit no N/A 0.405 0.351 0.531 3e-45
Q7TNC8452 Glycine receptor subunit no N/A 0.405 0.351 0.531 3e-45
P22771452 Glycine receptor subunit no N/A 0.405 0.351 0.531 4e-45
O93430444 Glycine receptor subunit no N/A 0.405 0.358 0.506 3e-43
Q61603456 Glycine receptor subunit no N/A 0.405 0.348 0.521 4e-43
Q5JXX5417 Glycine receptor subunit no N/A 0.405 0.381 0.521 8e-43
Q64018457 Glycine receptor subunit no N/A 0.405 0.347 0.493 1e-42
>sp|P24524|GLRA3_RAT Glycine receptor subunit alpha-3 OS=Rattus norvegicus GN=Glra3 PE=2 SV=1 Back     alignment and function desciption
 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/160 (53%), Positives = 117/160 (73%), Gaps = 1/160 (0%)

Query: 6   RLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLV 65
           RLTL LSC M+   +P D Q C +Q+ES  +T +DLIF+W  E P+ V E + LPQ  L 
Sbjct: 164 RLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLK 223

Query: 66  KNKTAD-CSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAP 124
           + K    C++ Y+TG FTC+EV F L+R++GYYL   YIP+ LIVI+SWVSFWI  +AAP
Sbjct: 224 EEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAP 283

Query: 125 ARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSAC 164
           ARV LG+T++LT++TQ + S+ASLP VSY+KA+D +M+ C
Sbjct: 284 ARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVC 323
The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).
Rattus norvegicus (taxid: 10116)
>sp|Q91XP5|GLRA3_MOUSE Glycine receptor subunit alpha-3 OS=Mus musculus GN=Glra3 PE=2 SV=2 Back     alignment and function description
>sp|O75311|GLRA3_HUMAN Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=2 SV=2 Back     alignment and function description
>sp|P23416|GLRA2_HUMAN Glycine receptor subunit alpha-2 OS=Homo sapiens GN=GLRA2 PE=2 SV=1 Back     alignment and function description
>sp|Q7TNC8|GLRA2_MOUSE Glycine receptor subunit alpha-2 OS=Mus musculus GN=Glra2 PE=2 SV=1 Back     alignment and function description
>sp|P22771|GLRA2_RAT Glycine receptor subunit alpha-2 OS=Rattus norvegicus GN=Glra2 PE=1 SV=1 Back     alignment and function description
>sp|O93430|GLRA1_DANRE Glycine receptor subunit alphaZ1 OS=Danio rerio GN=glra1 PE=2 SV=1 Back     alignment and function description
>sp|Q61603|GLRA4_MOUSE Glycine receptor subunit alpha-4 OS=Mus musculus GN=Glra4 PE=2 SV=3 Back     alignment and function description
>sp|Q5JXX5|GLRA4_HUMAN Glycine receptor subunit alpha-4 OS=Homo sapiens GN=GLRA4 PE=2 SV=3 Back     alignment and function description
>sp|Q64018|GLRA1_MOUSE Glycine receptor subunit alpha-1 OS=Mus musculus GN=Glra1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
383865049 753 PREDICTED: glycine receptor subunit alph 0.668 0.347 0.549 2e-85
328715314232 PREDICTED: glycine receptor subunit alph 0.403 0.681 0.931 3e-84
350398691 2188 PREDICTED: laminin subunit beta-1-like [ 0.352 0.063 0.913 4e-84
383864059429 PREDICTED: glycine receptor subunit alph 0.403 0.368 0.925 4e-84
383864061409 PREDICTED: glycine receptor subunit alph 0.403 0.386 0.925 5e-84
307180901 2183 Laminin subunit beta-1 [Camponotus flori 0.403 0.072 0.913 6e-84
118150484428 histamine-gated chloride channel 1 precu 0.403 0.369 0.919 8e-84
340709978428 PREDICTED: glycine receptor subunit alph 0.403 0.369 0.913 1e-83
332018203416 Glycine receptor subunit alpha-3 [Acromy 0.403 0.379 0.913 1e-83
157131881477 histamine-gated chloride channel subunit 0.403 0.331 0.919 3e-83
>gi|383865049|ref|XP_003707988.1| PREDICTED: glycine receptor subunit alpha-4-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 160/291 (54%), Positives = 201/291 (69%), Gaps = 29/291 (9%)

Query: 6   RLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLV 65
           +LTL LSCAM F  YPHDTQ CS+ +ESLSHTT DL+F W+   PL V+ +IELPQL + 
Sbjct: 238 KLTLVLSCAMKFESYPHDTQICSMMIESLSHTTQDLVFIWNMTDPLVVNPEIELPQLDIS 297

Query: 66  KNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPA 125
            N T DC+  YSTGNFTC++++F L+RRLGY+LFHTYIP+ LIV+ +  SF  +P  +  
Sbjct: 298 NNYTTDCTIEYSTGNFTCIQIVFNLRRRLGYHLFHTYIPSALIVVFT--SFPRQPRFSSL 355

Query: 126 RVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSACTVSSTSLTFNDILPEDPKLYD 185
            ++   + L     ++ + +A                       SL+  DILP +PK YD
Sbjct: 356 LLSSRESDL----EEYGRKEA-----------------------SLSLKDILPLNPKQYD 388

Query: 186 KMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRL 245
           K R PK  GQPTIVYFHVTV+ LDSI+E SMTY ADIF AQ+W+D RLRLPENM+ EYR+
Sbjct: 389 KHRAPKFLGQPTIVYFHVTVLSLDSINEESMTYVADIFLAQSWRDSRLRLPENMSEEYRI 448

Query: 246 LEVDWLKNMWRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFM 296
           L+VDWL N+WRPD FFKNAK VTF  M+IPNHY+WLY DKT+LYM K   +
Sbjct: 449 LDVDWLHNIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLV 499

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328715314|ref|XP_003245592.1| PREDICTED: glycine receptor subunit alpha-3-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|350398691|ref|XP_003485275.1| PREDICTED: laminin subunit beta-1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383864059|ref|XP_003707497.1| PREDICTED: glycine receptor subunit alpha-3-like isoform 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|383864061|ref|XP_003707498.1| PREDICTED: glycine receptor subunit alpha-3-like isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|307180901|gb|EFN68709.1| Laminin subunit beta-1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|118150484|ref|NP_001071279.1| histamine-gated chloride channel 1 precursor [Apis mellifera] gi|380014766|ref|XP_003691389.1| PREDICTED: glycine receptor subunit alpha-3-like [Apis florea] gi|110555518|gb|ABG75739.1| histamine-gated chloride channel [Apis mellifera] Back     alignment and taxonomy information
>gi|340709978|ref|XP_003393576.1| PREDICTED: glycine receptor subunit alpha-3-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|332018203|gb|EGI58808.1| Glycine receptor subunit alpha-3 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|157131881|ref|XP_001662354.1| histamine-gated chloride channel subunit [Aedes aegypti] gi|108871361|gb|EAT35586.1| AAEL012248-PA [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query392
FB|FBgn0003011485 ort "ora transientless" [Droso 0.410 0.331 0.776 3.2e-85
FB|FBgn0037950426 HisCl1 "Histamine-gated chlori 0.410 0.377 0.590 4.8e-60
UNIPROTKB|E2R7P3464 GLRA3 "Uncharacterized protein 0.405 0.342 0.493 1.6e-47
UNIPROTKB|J9P291449 GLRA3 "Uncharacterized protein 0.405 0.354 0.493 1.6e-47
UNIPROTKB|F1Q2X8409 GLRA3 "Uncharacterized protein 0.405 0.388 0.493 1.6e-47
MGI|MGI:95749464 Glra3 "glycine receptor, alpha 0.405 0.342 0.493 1.6e-47
RGD|621229464 Glra3 "glycine receptor, alpha 0.405 0.342 0.493 1.6e-47
UNIPROTKB|F1MNR0375 GLRA3 "Uncharacterized protein 0.405 0.424 0.493 1.6e-47
UNIPROTKB|F1RJ16376 GLRA3 "Uncharacterized protein 0.405 0.422 0.493 1.6e-47
UNIPROTKB|E1BTB5452 GLRA2 "Uncharacterized protein 0.405 0.351 0.487 5.3e-47
FB|FBgn0003011 ort "ora transientless" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 682 (245.1 bits), Expect = 3.2e-85, Sum P(3) = 3.2e-85
 Identities = 125/161 (77%), Positives = 137/161 (85%)

Query:     6 RLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIELPQLQLV 65
             +LTLKLSC MNF IYPHDTQEC LQ+ESLSHTTDDLIFQWDP  PL VDE IELPQ+ L+
Sbjct:   148 KLTLKLSCIMNFAIYPHDTQECKLQVESLSHTTDDLIFQWDPTTPLVVDENIELPQVALI 207

Query:    66 KNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPA 125
             +N+TADC+QVYSTGNFTCLEV+F LKRRL YY+F+TYIPTC+IVIMSWVSFWIKPEAAPA
Sbjct:   208 RNETADCTQVYSTGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPA 267

Query:   126 RXXXXXXXXXXXXXQHAKSQASLPPVSYLKAVDAFMSACTV 166
             R             QHAKSQ+SLPPVSYLKAVDAFMS CTV
Sbjct:   268 RVTLGVTSLLTLSTQHAKSQSSLPPVSYLKAVDAFMSVCTV 308
GO:0019182 "histamine-gated chloride channel activity" evidence=ISS;NAS
GO:0019183 "histamine-gated chloride channel complex" evidence=NAS
GO:0007268 "synaptic transmission" evidence=IMP
GO:0045472 "response to ether" evidence=IMP
GO:0009636 "response to toxic substance" evidence=IMP
GO:0030534 "adult behavior" evidence=IMP
GO:0016021 "integral to membrane" evidence=IEA
GO:0006811 "ion transport" evidence=IEA
GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA
GO:0045211 "postsynaptic membrane" evidence=IEA
GO:0043052 "thermotaxis" evidence=IMP
FB|FBgn0037950 HisCl1 "Histamine-gated chloride channel subunit 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7P3 GLRA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P291 GLRA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q2X8 GLRA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:95749 Glra3 "glycine receptor, alpha 3 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621229 Glra3 "glycine receptor, alpha 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNR0 GLRA3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RJ16 GLRA3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BTB5 GLRA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O75311GLRA3_HUMANNo assigned EC number0.53750.40560.3426yesN/A
P24524GLRA3_RATNo assigned EC number0.53750.40560.3426yesN/A
Q91XP5GLRA3_MOUSENo assigned EC number0.53750.40560.3426yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
TIGR00860459 TIGR00860, LIC, Cation transporter family protein 4e-54
pfam02932228 pfam02932, Neur_chan_memb, Neurotransmitter-gated 1e-19
TIGR00860 459 TIGR00860, LIC, Cation transporter family protein 5e-15
pfam02931215 pfam02931, Neur_chan_LBD, Neurotransmitter-gated i 3e-14
pfam02931215 pfam02931, Neur_chan_LBD, Neurotransmitter-gated i 1e-13
>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein Back     alignment and domain information 
 Score =  185 bits (471), Expect = 4e-54
 Identities = 72/164 (43%), Positives = 107/164 (65%), Gaps = 3/164 (1%)

Query: 6   RLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEK--IELPQLQ 63
           R+TL L+C M+   +P D Q CSL+ ES  +TT+D+  +W  +  + VD+   I LP+ +
Sbjct: 149 RITLTLACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEWKEQGAVQVDDSLFISLPEFE 208

Query: 64  LVKNK-TADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEA 122
           L+    T  C+   +TG + CL   FVL+RR  YYL   YIP+ LIVI+SWVSFW+  +A
Sbjct: 209 LLGVYGTRYCTSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADA 268

Query: 123 APARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSACTV 166
           + ARV+LG+T+LLT++T  +  + SLP VSY+KA+D + + C  
Sbjct: 269 SGARVSLGITTLLTMTTFSSGVRESLPAVSYVKAIDVYFAVCMA 312

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459
>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region Back     alignment and domain information
>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein Back     alignment and domain information
>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain Back     alignment and domain information
>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 392
KOG3643|consensus459 100.0
KOG3644|consensus457 100.0
KOG3642|consensus466 100.0
TIGR00860459 LIC Cation transporter family protein. selective w 100.0
KOG3646|consensus 486 99.97
KOG3646|consensus486 99.96
KOG3645|consensus449 99.96
TIGR00860 459 LIC Cation transporter family protein. selective w 99.95
KOG3645|consensus 449 99.93
KOG3643|consensus 459 99.93
PF02931217 Neur_chan_LBD: Neurotransmitter-gated ion-channel 99.9
KOG3642|consensus 466 99.88
KOG3644|consensus 457 99.87
PF02932237 Neur_chan_memb: Neurotransmitter-gated ion-channel 99.73
PF02931217 Neur_chan_LBD: Neurotransmitter-gated ion-channel 99.55
PF14494256 DUF4436: Domain of unknown function (DUF4436) 84.7
>KOG3643|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.1e-51  Score=391.80  Aligned_cols=168  Identities=43%  Similarity=0.827  Sum_probs=161.1

Q ss_pred             CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCC-CCccccccccccceeEEeeeeeeeeeecCCC
Q psy5854           1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPE-MPLAVDEKIELPQLQLVKNKTADCSQVYSTG   79 (392)
Q Consensus         1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~-~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~~   79 (392)
                      +.+++|++.++.|+|||++||+|+|+|+|+++||+|+++||.+.|..+ +++...+.++++|+.+.+.........+.+|
T Consensus       148 Vlys~RlT~Ta~C~MDL~~fPmD~Q~C~LeiESYGYt~~DI~y~W~~g~~av~~~e~i~LpqFti~~~~~~s~~~~~sTG  227 (459)
T KOG3643|consen  148 VLYSIRLTVTAACPMDLKLFPMDSQNCKLEIESYGYTTDDIEYYWSKGDNAVKGDEKIELPQFTITEYHVTSRLVSFSTG  227 (459)
T ss_pred             EEEEEEEEEEEecccccccCCCcccceeEEEEecccccccEEEEEcCCCccccceeeeeccceEEEEEEEEEEEEEEccc
Confidence            468999999999999999999999999999999999999999999974 4777788899999999999998888899999


Q ss_pred             cceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCccccccccc
Q psy5854          80 NFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDA  159 (392)
Q Consensus        80 ~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s~~~~i~~  159 (392)
                      +|++|.+.|.|+|+.+||++++|+|+.+++++||+||||+.+++++|+++|+|++|+|++++...+++||++||+++||+
T Consensus       228 ~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvSYVKAiDi  307 (459)
T KOG3643|consen  228 NYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVSYVKAIDV  307 (459)
T ss_pred             cceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCccceeeehh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeecc
Q psy5854         160 FMSACTVSS  168 (392)
Q Consensus       160 ~l~~~l~~~  168 (392)
                      |+.+|+++.
T Consensus       308 YL~vCFvfV  316 (459)
T KOG3643|consen  308 YLGVCFVFV  316 (459)
T ss_pred             hhhHHHHHH
Confidence            999998743

>KOG3644|consensus Back     alignment and domain information
>KOG3642|consensus Back     alignment and domain information
>TIGR00860 LIC Cation transporter family protein Back     alignment and domain information
>KOG3646|consensus Back     alignment and domain information
>KOG3646|consensus Back     alignment and domain information
>KOG3645|consensus Back     alignment and domain information
>TIGR00860 LIC Cation transporter family protein Back     alignment and domain information
>KOG3645|consensus Back     alignment and domain information
>KOG3643|consensus Back     alignment and domain information
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>KOG3642|consensus Back     alignment and domain information
>KOG3644|consensus Back     alignment and domain information
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>PF14494 DUF4436: Domain of unknown function (DUF4436) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
3rhw_A347 C. Elegans Glutamate-Gated Chloride Channel (Glucl) 3e-32
3rhw_A 347 C. Elegans Glutamate-Gated Chloride Channel (Glucl) 7e-10
2bg9_B370 Refined Structure Of The Nicotinic Acetylcholine Re 3e-04
4aq5_B493 Gating Movement In Acetylcholine Receptor Analysed 8e-04
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347 Back     alignment and structure 
Iteration: 1

 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 89/161 (55%), Gaps = 2/161 (1%)
Query: 6   RLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDEKIE--LPQLQ 63
           R++L LSC M    YP D Q+CS+ + S ++TT D+ + W    PL +   +   LP  Q
Sbjct: 123 RISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQ 182
Query: 64  LVKNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAA 123
           L    T  C+ V +TG ++CL     LKR   +YL   YIP+C++VI+SWVSFW    A 
Sbjct: 183 LTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAI 242
Query: 124 PARXXXXXXXXXXXXXQHAKSQASLPPVSYLKAVDAFMSAC 164
           PAR             Q A   + LPPVSY+KA+D ++ AC
Sbjct: 243 PARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGAC 283
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347 Back     alignment and structure
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query392
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 5e-66
3rhw_A 347 Avermectin-sensitive glutamate-gated chloride CHA 5e-32
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 1e-64
3tlw_A 321 GLR4197 protein, GLIC; Cys-loop receptor family, m 8e-25
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 1e-64
3rqw_A 322 ELIC pentameric ligand gated ION channel from ERW 3e-24
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 6e-31
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 2e-26
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 8e-13
2bg9_C 369 Acetylcholine receptor protein, delta chain; ION c 2e-04
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 9e-13
2bg9_B 370 Acetylcholine receptor protein, beta chain; ION ch 3e-05
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 1e-12
2bg9_E 370 Acetylcholine receptor protein, gamma chain; ION c 2e-05
1vry_A76 Glycine receptor alpha-1 chain; second transmembra 3e-12
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 4e-12
2bg9_A 370 Acetylcholine receptor protein, alpha chain; ION c 8e-06
4aq5_A461 Acetylcholine receptor subunit alpha; membrane pro 1e-11
4aq5_A 461 Acetylcholine receptor subunit alpha; membrane pro 3e-05
4aq5_E488 Acetylcholine receptor gamma subunit; membrane pro 3e-11
4aq5_E 488 Acetylcholine receptor gamma subunit; membrane pro 8e-06
4aq5_B493 Acetylcholine receptor beta subunit; membrane prot 4e-11
4aq5_B 493 Acetylcholine receptor beta subunit; membrane prot 4e-05
4aq5_C522 Acetylcholine receptor delta subunit; membrane pro 2e-10
4aq5_C 522 Acetylcholine receptor delta subunit; membrane pro 2e-04
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 6e-07
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 1e-06
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 6e-06
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 9e-06
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 1e-05
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 1e-05
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 4e-05
1mot_A28 Glycine receptor alpha-1 chain; second transmembra 4e-05
1oed_E260 Acetylcholine receptor protein, gamma chain; ION c 2e-04
1oed_C260 Acetylcholine receptor protein, delta chain; ION c 7e-04
1oed_B250 Acetylcholine receptor protein, beta chain; ION ch 9e-04
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347 Back     alignment and structure
 Score =  212 bits (542), Expect = 5e-66
 Identities = 73/164 (44%), Positives = 100/164 (60%), Gaps = 2/164 (1%)

Query: 5   YRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVD--EKIELPQL 62
            R++L LSC M    YP D Q+CS+ + S ++TT D+ + W    PL +       LP  
Sbjct: 122 VRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSF 181

Query: 63  QLVKNKTADCSQVYSTGNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEA 122
           QL    T  C+ V +TG ++CL     LKR   +YL   YIP+C++VI+SWVSFW    A
Sbjct: 182 QLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTA 241

Query: 123 APARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSACTV 166
            PARVTLGVT+LLT++ Q A   + LPPVSY+KA+D ++ AC  
Sbjct: 242 IPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMT 285
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347 Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321 Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321 Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322 Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322 Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201 Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201 Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369 Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369 Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Length = 76 Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461 Back     alignment and structure
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461 Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488 Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488 Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493 Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493 Back     alignment and structure
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522 Back     alignment and structure
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522 Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212 Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204 Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Length = 211 Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Length = 137 Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Length = 140 Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Length = 164 Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Length = 203 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Length = 228 Back     alignment and structure
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Length = 28 Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260 Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260 Back     alignment and structure
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Length = 250 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 100.0
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 100.0
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 100.0
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 100.0
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 100.0
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 100.0
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 100.0
4aq5_A461 Acetylcholine receptor subunit alpha; membrane pro 99.98
4aq5_B493 Acetylcholine receptor beta subunit; membrane prot 99.97
4aq5_E488 Acetylcholine receptor gamma subunit; membrane pro 99.97
4aq5_C522 Acetylcholine receptor delta subunit; membrane pro 99.97
4aoe_A205 Acetylcholine-binding protein type 2; ligand gated 99.97
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 99.96
4aod_A205 Acetylcholine-binding protein type 1; ligand gated 99.96
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 99.96
3rhw_A 347 Avermectin-sensitive glutamate-gated chloride CHA 99.96
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 99.96
4aq5_A 461 Acetylcholine receptor subunit alpha; membrane pro 99.95
4aq5_C 522 Acetylcholine receptor delta subunit; membrane pro 99.95
2bg9_E 370 Acetylcholine receptor protein, gamma chain; ION c 99.95
2bg9_C 369 Acetylcholine receptor protein, delta chain; ION c 99.95
2bg9_A 370 Acetylcholine receptor protein, alpha chain; ION c 99.95
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 99.95
2bg9_B 370 Acetylcholine receptor protein, beta chain; ION ch 99.95
4aq5_E 488 Acetylcholine receptor gamma subunit; membrane pro 99.95
4afh_A230 ACHBP; acetylcholine-binding protein, nicotinic re 99.95
4aq5_B 493 Acetylcholine receptor beta subunit; membrane prot 99.95
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 99.94
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 99.94
3tlw_A 321 GLR4197 protein, GLIC; Cys-loop receptor family, m 99.93
3rqw_A 322 ELIC pentameric ligand gated ION channel from ERW 99.88
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 99.78
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 99.76
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 99.74
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 99.72
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 99.71
4aod_A205 Acetylcholine-binding protein type 1; ligand gated 99.7
4aoe_A205 Acetylcholine-binding protein type 2; ligand gated 99.69
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 99.69
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 99.67
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 99.66
4afh_A230 ACHBP; acetylcholine-binding protein, nicotinic re 99.63
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 99.6
1oed_E260 Acetylcholine receptor protein, gamma chain; ION c 99.29
1oed_A227 Acetylcholine receptor protein, alpha chain; ION c 99.27
1oed_B250 Acetylcholine receptor protein, beta chain; ION ch 99.26
1oed_C260 Acetylcholine receptor protein, delta chain; ION c 99.21
1vry_A76 Glycine receptor alpha-1 chain; second transmembra 98.59
1mot_A28 Glycine receptor alpha-1 chain; second transmembra 95.35
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Back     alignment and structure
Probab=100.00  E-value=2e-41  Score=329.88  Aligned_cols=172  Identities=42%  Similarity=0.815  Sum_probs=160.2

Q ss_pred             CeeeeeEEEEEeeceeecccCcceeEEeEEEEeeccCCCeEEEeeCCCCCccccc--cccccceeEEeeeeeeeeeecCC
Q psy5854           1 MTSEYRLTLKLSCAMNFMIYPHDTQECSLQMESLSHTTDDLIFQWDPEMPLAVDE--KIELPQLQLVKNKTADCSQVYST   78 (392)
Q Consensus         1 ~~~~~r~~~~~~C~mdl~~fPfD~Q~C~l~~~s~~~~~~~v~~~~~~~~~~~~~~--~~~~~~w~l~~~~~~~~~~~~~~   78 (392)
                      +.|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++++.|..++++...+  ...++||++.+.....+...+.+
T Consensus       118 V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~  197 (347)
T 3rhw_A          118 VLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNT  197 (347)
T ss_dssp             EEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEEECSSCSEEECTTSGGGCCSEEEEEEEEEECCEECSS
T ss_pred             EEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEEecCCCceeecCcceeEccceEEeeEEeeEeeeeecc
Confidence            4799999999999999999999999999999999999999999998766666555  67889999999988888888889


Q ss_pred             CcceEEEEEEEEEEeceEEEEEeecceeheeeeeeEEEeecCCCcccceeeeehhhhhhhhhhhcccccCCCcccccccc
Q psy5854          79 GNFTCLEVIFVLKRRLGYYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVD  158 (392)
Q Consensus        79 ~~ys~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~~Fwi~~~~~~~Rv~l~it~lL~~~~~~~~~~~~LP~~s~~~~i~  158 (392)
                      |.|+++.+.+++||+++||++++++||+++++++|++||+|+++.++|+++|+|++|++++++..+++.||++||+|+||
T Consensus       198 ~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~~~~lP~~S~v~~id  277 (347)
T 3rhw_A          198 GIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAID  277 (347)
T ss_dssp             CEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCCHHH
T ss_pred             cceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHHHhhCCCccceeHHH
Confidence            99999999999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             ceeeeeeeccchhh
Q psy5854         159 AFMSACTVSSTSLT  172 (392)
Q Consensus       159 ~~l~~~l~~~~~~~  172 (392)
                      .|+.+|+++...+.
T Consensus       278 ~~~~~~~~~v~~sl  291 (347)
T 3rhw_A          278 VWIGACMTFIFCAL  291 (347)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999987654433
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A* Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Back     alignment and structure
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Back     alignment and structure
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata} Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Back     alignment and structure
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata} Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A* Back     alignment and structure
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Back     alignment and structure
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Back     alignment and structure
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A* Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A* Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A* Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Back     alignment and structure
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata} Back     alignment and structure
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata} Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A* Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Back     alignment and structure
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Back     alignment and structure
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Back     alignment and structure
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Back     alignment and structure
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 392
d1oede_260 f.36.1.1 (E:) Acetylcholine receptor protein, gamm 1e-16
d1oedb_250 f.36.1.1 (B:) Acetylcholine receptor protein, beta 3e-15
d1oeda_227 f.36.1.1 (A:) Acetylcholine receptor protein, alph 6e-15
d1oedc_260 f.36.1.1 (C:) Acetylcholine receptor protein, delt 6e-14
d1uw6a_208 b.96.1.1 (A:) Acetylcholine binding protein (ACHBP 3e-11
d1uw6a_208 b.96.1.1 (A:) Acetylcholine binding protein (ACHBP 6e-05
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 76.8 bits (188), Expect = 1e-16
 Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 96  YYLFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVS-YL 154
           +Y+ +   P  LI  +  + +++  +A   + TL ++ LL  +         +P  S  +
Sbjct: 3   FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62

Query: 155 KAVDAFMSACTVSSTSLTFNDI 176
             +  ++      S  +  N +
Sbjct: 63  PLIGKYLIFVMFVSMLIVMNCV 84
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250 Back     information, alignment and structure
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227 Back     information, alignment and structure
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208 Back     information, alignment and structure
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query392
d1uw6a_208 Acetylcholine binding protein (ACHBP) {Great pond 99.93
d1oede_260 Acetylcholine receptor protein, gamma chain {Marbl 99.66
d1uw6a_208 Acetylcholine binding protein (ACHBP) {Great pond 99.61
d1oeda_227 Acetylcholine receptor protein, alpha chain {Marbl 99.61
d1oedc_260 Acetylcholine receptor protein, delta chain {Marbl 99.46
d1oedb_250 Acetylcholine receptor protein, beta chain {Marble 99.3
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Back     information, alignment and structure
class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

Probab=99.93  E-value=2e-26  Score=205.52  Aligned_cols=133  Identities=14%  Similarity=0.189  Sum_probs=114.4

Q ss_pred             cCccccCCCCCC----CCCCCCEEEEEEEEEeeecccccccceEEeeeeeeccccccccccCCCCCccceeeehhhhccc
Q psy5854         179 EDPKLYDKMRPP----KKEGQPTIVYFHVTVMGLDSIDENSMTYAADIFFAQTWKDHRLRLPENMTSEYRLLEVDWLKNM  254 (392)
Q Consensus       179 ~ll~~yd~~~rP----~~~~~pv~V~~~~~l~~i~~vde~~q~~~~~~w~~~~W~D~~L~w~~~~~~~~~~l~~~~~~~i  254 (392)
                      +|+.+|++..||    ...+.|+.|.+++.+.+|.++||++|++++++|++|+|+|+||+|||+++++.+.++   .++|
T Consensus         6 dll~~y~~~~rP~~~P~~~~~pv~V~~~l~l~~i~~vde~~q~~~~~~~~~~~W~D~rL~Wnp~~~~~~~~v~---~~~i   82 (208)
T d1uw6a_           6 DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVP---ISSL   82 (208)
T ss_dssp             HHHHHHHHHCCTTSCCCCTTCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCSEEEEE---GGGS
T ss_pred             HhHhccccccCCCcCCcCCCCCEEEEEEEEEEeEeeecccCCEEEEEEEEEEEEECCccccccccCCceeccc---hhcc
Confidence            455666666666    466789999999999999999999999999999999999999999999988887777   7899


Q ss_pred             cCCccccccccccccccccccceEEEEecCcEEEEEecEEEEEeceeE--------EeeeecCCCCCCCCC
Q psy5854         255 WRPDSFFKNAKAVTFQTMTIPNHYVWLYKDKTILYMVKFVFMALMEYC--------LVNIVLGDSDLPKPP  317 (392)
Q Consensus       255 W~PDi~l~N~~~~~~~~~~~~~~~v~v~~~G~V~~~~p~~~~s~C~~~--------~~~fpfd~~~~~~~~  317 (392)
                      |+|||+++|+++..+..   .+..+.|++||+|.|++|++++++|+|+        .|.+.|+||+|++..
T Consensus        83 W~PDi~l~n~~~~~~~~---~~~~~~v~~~G~V~~~~~~~~~~~C~~~~~~f~d~Q~C~l~fgSw~y~~~~  150 (208)
T d1uw6a_          83 WVPDLAAYNAISKPEVL---TPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSRE  150 (208)
T ss_dssp             CCCCEEETTBCSCCEEC---SCCEEEEETTSEEEECCEEEEEEECCCTTTTSSSCEEEEEEEEESSCCTTT
T ss_pred             ccccEEEEEEccccccc---cceEEEEEeCCcEEEEecEEEEEeccccccCCcceEEEEEEEeCceeccce
Confidence            99999999998765432   3446789999999999999999999987        577778899997664
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Back     information, alignment and structure
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure