Psyllid ID: psy5865

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MNYTASSLNYSVERLKIRSVYNNIYRRKPAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTSMG
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEEcccccccccccccccccccccEEEEEEEEEEEEcccccccccEEEEcccccccccEEcEEcccccccccccccccEEEEEcEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHEEEHEHHHHcHccccccccccccccccEEEEEEEEEEEEcccccccccccEEEEcccHHHHHcccEEEccccccHcHHHHcccEEEEcEEEEEEEEccc
Coil and Loop (DISEMBL)
MNYTASSLNYSVERLKIRSVYNNiyrrkpavprtpllpaegaifvtnyriifkgtpldpfaceqvvtrafpitslnkeKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTSMG
Flexible Loop (DISEMBL)
mnytasslnysverLKIRSVYNNIyrrkpavprtpllpAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTSMG
Low Complexity Region (SEG)
MNYTASSLNYSVERLKIRSVYNNIYRRKPAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTSMG
Disordered region (IsUnstruct)
********NYSVERLKIRSVYNNIYRRKPAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHL************************
Disordered Region (DISOPRED)
********NYSVERLKIRSVYNNIY******PRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTSM*
Disordered Region (DISEMBL)
MNYTASSLNYSVERLKIRSVYNNIYRRKPAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTSMG
Disordered Region (DISPRO)
*****SSLNYSVERLKIRSVYNNIYRRKPAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNYTASSLNYSVERLKIRSVYNNIYRRKPAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTSMG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
Q6ZPE2	1867	Myotubularin-related prot	yes	N/A	0.637	0.038	0.567	1e-17
O95248	1867	Myotubularin-related prot	yes	N/A	0.637	0.038	0.567	1e-17
Q6NTN5	1873	Myotubularin-related prot	N/A	N/A	0.610	0.036	0.577	5e-17
Q86WG5	1849	Myotubularin-related prot	no	N/A	0.584	0.035	0.544	9e-12

>sp|Q6ZPE2|MTMR5_MOUSE Myotubularin-related protein 5 OS=Mus musculus GN=Sbf1 PE=1 SV=2

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/74 (56%), Positives = 55/74 (74%), Gaps = 2/74 (2%)

Query: 36  LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
           LLPAEGA+F+T YR+IF G P DP   EQVV R+FP+ +L KEK+I+ Q  + +DQ LQ+
Sbjct: 922 LLPAEGAVFLTTYRVIFTGMPTDPLVGEQVVVRSFPVAALTKEKRISVQ--TPVDQLLQD 979

Query: 96  GYQLRSSTFQVTAL 109
           G QLRS TFQ+  +
Sbjct: 980 GLQLRSCTFQLLKM 993

Probable pseudophosphatase. Lacks several amino acids in the catalytic pocket which renders it catalytically inactive as a phosphatase. The pocket is however sufficiently preserved to bind phosphorylated substrates, and maybe protect them from phosphatases. Inhibits myoblast differentiation in vitro and induces oncogenic transformation in fibroblasts.
Mus musculus (taxid: 10090)

>sp|O95248|MTMR5_HUMAN Myotubularin-related protein 5 OS=Homo sapiens GN=SBF1 PE=1 SV=3

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/74 (56%), Positives = 55/74 (74%), Gaps = 2/74 (2%)

Query: 36  LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
           LLPAEGA+F+T YR+IF G P DP   EQVV R+FP+ +L KEK+I+ Q  + +DQ LQ+
Sbjct: 922 LLPAEGAVFLTTYRVIFTGMPTDPLVGEQVVVRSFPVAALTKEKRISVQ--TPVDQLLQD 979

Query: 96  GYQLRSSTFQVTAL 109
           G QLRS TFQ+  +
Sbjct: 980 GLQLRSCTFQLLKM 993

Probable pseudophosphatase. Lacks several amino acids in the catalytic pocket which renders it catalytically inactive as a phosphatase. The pocket is however sufficiently preserved to bind phosphorylated substrates, and maybe protect them from phosphatases. Inhibits myoblast differentiation in vitro and induces oncogenic transformation in fibroblasts.

Homo sapiens (taxid: 9606)

>sp|Q6NTN5|MTMRD_XENLA Myotubularin-related protein 13 OS=Xenopus laevis GN=sbf2 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 53/71 (74%), Gaps = 2/71 (2%)

Query: 36  LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
           +LPAEGA+F+T YRIIFKGTP D    EQ V R+ PI S+ +EKKI  Q  + L Q++QE
Sbjct: 909 ILPAEGALFLTTYRIIFKGTPHDALVGEQTVIRSVPIASITREKKINVQ--NQLHQNMQE 966

Query: 96  GYQLRSSTFQV 106
           G Q+RS+TFQ+
Sbjct: 967 GLQIRSATFQL 977

Xenopus laevis (taxid: 8355)

>sp|Q86WG5|MTMRD_HUMAN Myotubularin-related protein 13 OS=Homo sapiens GN=SBF2 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (2%)

Query: 39  AEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQ 98
           AEGA+F+T YRI+F+GTP D    EQ V R+FPI S+ KEKKIT Q      Q++QEG Q
Sbjct: 914 AEGALFLTTYRILFRGTPHDQLVGEQTVVRSFPIASITKEKKITMQNQLQ--QNMQEGLQ 971

Query: 99  LRSSTFQV 106
           + S++FQ+
Sbjct: 972 ITSASFQL 979

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
380014708	2046	PREDICTED: myotubularin-related protein	0.699	0.038	0.703	7e-28
307195457	2045	Myotubularin-related protein 13 [Harpegn	0.699	0.038	0.703	8e-28
322792461	2049	hypothetical protein SINV_80004 [Solenop	0.699	0.038	0.703	8e-28
383850814	2044	PREDICTED: myotubularin-related protein	0.699	0.038	0.703	8e-28
340710336	2044	PREDICTED: myotubularin-related protein	0.699	0.038	0.703	8e-28
328780506	2045	PREDICTED: myotubularin-related protein	0.699	0.038	0.703	8e-28
350415868	2044	PREDICTED: myotubularin-related protein	0.699	0.038	0.703	8e-28
307180442	2047	Myotubularin-related protein 13 [Campono	0.699	0.038	0.703	9e-28
332023782	2038	Myotubularin-related protein 13 [Acromyr	0.699	0.038	0.703	9e-28
328714925	2052	PREDICTED: myotubularin-related protein	0.601	0.033	0.779	1e-26

>gi|380014708|ref|XP_003691362.1| PREDICTED: myotubularin-related protein 13-like [Apis florea]

 Score =  127 bits (319), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 67/81 (82%), Gaps = 2/81 (2%)

Query: 29   PAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSH 88
            P +P  PLLPAEGAIF+TNYRI+FKG P DPFACEQ+V RAFP+TSL KEK++  Q+L+H
Sbjct: 944  PKIP--PLLPAEGAIFLTNYRIVFKGIPCDPFACEQLVVRAFPVTSLTKEKRVAVQHLAH 1001

Query: 89   LDQSLQEGYQLRSSTFQVTAL 109
            LDQ LQEG QLRS TFQ+  L
Sbjct: 1002 LDQCLQEGLQLRSCTFQLIKL 1022

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195457|gb|EFN77343.1| Myotubularin-related protein 13 [Harpegnathos saltator]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 67/81 (82%), Gaps = 2/81 (2%)

Query: 29   PAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSH 88
            P +P  PLLPAEGAIF+TNYRI+FKG P DPFACEQ+V RAFP+TSL KEK++  Q+L+H
Sbjct: 943  PKIP--PLLPAEGAIFLTNYRIVFKGIPCDPFACEQLVVRAFPVTSLTKEKRVAVQHLAH 1000

Query: 89   LDQSLQEGYQLRSSTFQVTAL 109
            LDQ LQEG QLRS TFQ+  L
Sbjct: 1001 LDQCLQEGLQLRSCTFQLIKL 1021

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322792461|gb|EFZ16445.1| hypothetical protein SINV_80004 [Solenopsis invicta]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 67/81 (82%), Gaps = 2/81 (2%)

Query: 29   PAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSH 88
            P +P  PLLPAEGAIF+TNYRI+FKG P DPFACEQ+V RAFP+TSL KEK++  Q+L+H
Sbjct: 943  PKIP--PLLPAEGAIFLTNYRIVFKGIPCDPFACEQLVVRAFPVTSLTKEKRVAVQHLAH 1000

Query: 89   LDQSLQEGYQLRSSTFQVTAL 109
            LDQ LQEG QLRS TFQ+  L
Sbjct: 1001 LDQCLQEGLQLRSCTFQLIKL 1021

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850814|ref|XP_003700969.1| PREDICTED: myotubularin-related protein 13-like [Megachile rotundata]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 67/81 (82%), Gaps = 2/81 (2%)

Query: 29   PAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSH 88
            P +P  PLLPAEGAIF+TNYRI+FKG P DPFACEQ+V RAFP+TSL KEK++  Q+L+H
Sbjct: 943  PKIP--PLLPAEGAIFLTNYRIVFKGIPCDPFACEQLVVRAFPVTSLTKEKRVAVQHLAH 1000

Query: 89   LDQSLQEGYQLRSSTFQVTAL 109
            LDQ LQEG QLRS TFQ+  L
Sbjct: 1001 LDQCLQEGLQLRSCTFQLIKL 1021

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710336|ref|XP_003393748.1| PREDICTED: myotubularin-related protein 5-like [Bombus terrestris]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 67/81 (82%), Gaps = 2/81 (2%)

Query: 29   PAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSH 88
            P +P  PLLPAEGAIF+TNYRI+FKG P DPFACEQ+V RAFP+TSL KEK++  Q+L+H
Sbjct: 943  PKIP--PLLPAEGAIFLTNYRIVFKGIPCDPFACEQLVVRAFPVTSLTKEKRVAVQHLAH 1000

Query: 89   LDQSLQEGYQLRSSTFQVTAL 109
            LDQ LQEG QLRS TFQ+  L
Sbjct: 1001 LDQCLQEGLQLRSCTFQLIKL 1021

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780506|ref|XP_394363.4| PREDICTED: myotubularin-related protein 13 isoform 1 [Apis mellifera]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 67/81 (82%), Gaps = 2/81 (2%)

Query: 29   PAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSH 88
            P +P  PLLPAEGAIF+TNYRI+FKG P DPFACEQ+V RAFP+TSL KEK++  Q+L+H
Sbjct: 944  PKIP--PLLPAEGAIFLTNYRIVFKGIPCDPFACEQLVVRAFPVTSLTKEKRVAVQHLAH 1001

Query: 89   LDQSLQEGYQLRSSTFQVTAL 109
            LDQ LQEG QLRS TFQ+  L
Sbjct: 1002 LDQCLQEGLQLRSCTFQLIKL 1022

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415868|ref|XP_003490773.1| PREDICTED: myotubularin-related protein 5-like isoform 1 [Bombus impatiens] gi|350415871|ref|XP_003490774.1| PREDICTED: myotubularin-related protein 5-like isoform 2 [Bombus impatiens]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 67/81 (82%), Gaps = 2/81 (2%)

Query: 29   PAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSH 88
            P +P  PLLPAEGAIF+TNYRI+FKG P DPFACEQ+V RAFP+TSL KEK++  Q+L+H
Sbjct: 943  PKIP--PLLPAEGAIFLTNYRIVFKGIPCDPFACEQLVVRAFPVTSLTKEKRVAVQHLAH 1000

Query: 89   LDQSLQEGYQLRSSTFQVTAL 109
            LDQ LQEG QLRS TFQ+  L
Sbjct: 1001 LDQCLQEGLQLRSCTFQLIKL 1021

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180442|gb|EFN68468.1| Myotubularin-related protein 13 [Camponotus floridanus]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 67/81 (82%), Gaps = 2/81 (2%)

Query: 29   PAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSH 88
            P +P  PLLPAEGAIF+TNYRI+FKG P DPFACEQ+V RAFP+TSL KEK++  Q+L+H
Sbjct: 943  PKIP--PLLPAEGAIFLTNYRIVFKGIPCDPFACEQLVVRAFPVTSLTKEKRVAVQHLAH 1000

Query: 89   LDQSLQEGYQLRSSTFQVTAL 109
            LDQ LQEG QLRS TFQ+  L
Sbjct: 1001 LDQCLQEGLQLRSCTFQLIKL 1021

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023782|gb|EGI64006.1| Myotubularin-related protein 13 [Acromyrmex echinatior]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 57/81 (70%), Positives = 67/81 (82%), Gaps = 2/81 (2%)

Query: 29   PAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSH 88
            P +P  PLLPAEGAIF+TNYRI+FKG P DPFACEQ+V RAFP+TSL KEK++  Q+L+H
Sbjct: 932  PKIP--PLLPAEGAIFLTNYRIVFKGIPCDPFACEQLVVRAFPVTSLTKEKRVAVQHLAH 989

Query: 89   LDQSLQEGYQLRSSTFQVTAL 109
            LDQ LQEG QLRS TFQ+  L
Sbjct: 990  LDQCLQEGLQLRSCTFQLIKL 1010

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714925|ref|XP_003245494.1| PREDICTED: myotubularin-related protein 13-like [Acyrthosiphon pisum]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/68 (77%), Positives = 62/68 (91%)

Query: 39   AEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQ 98
            AEGAIF+TNYRI+FKGTPLDPFACEQ+V R+FP+TSL KEK+IT QYL+HLDQ LQEG+Q
Sbjct: 950  AEGAIFITNYRIVFKGTPLDPFACEQIVVRSFPVTSLTKEKRITVQYLAHLDQWLQEGHQ 1009

Query: 99   LRSSTFQV 106
             RS TFQ+
Sbjct: 1010 FRSCTFQL 1017

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
FB|FBgn0025802	1993	Sbf "SET domain binding factor	0.628	0.035	0.690	3.8e-21
UNIPROTKB|F1NE84	1793	F1NE84 "Uncharacterized protei	0.619	0.039	0.694	7.3e-19
ZFIN|ZDB-GENE-040718-139	1885	sbf1 "SET binding factor 1" [D	0.619	0.037	0.652	1.9e-18
ZFIN|ZDB-GENE-030911-10	1898	sbf2 "SET binding factor 2" [D	0.610	0.036	0.605	2.2e-17
UNIPROTKB|E1C7M2	1844	SBF2 "Uncharacterized protein"	0.610	0.037	0.619	8.6e-17
RGD|1588657	1826	Sbf2 "SET binding factor 2" [R	0.610	0.037	0.577	4.6e-16
UNIPROTKB|F1PZ30	1849	SBF2 "Uncharacterized protein"	0.610	0.037	0.577	4.7e-16
UNIPROTKB|Q86WG5	1849	SBF2 "Myotubularin-related pro	0.610	0.037	0.577	4.7e-16
RGD|1307090	1573	Sbf1 "SET binding factor 1" [R	0.654	0.047	0.584	6e-16
UNIPROTKB|F1MMR9	1849	SBF2 "Uncharacterized protein"	0.610	0.037	0.577	6e-16

FB|FBgn0025802 Sbf "SET domain binding factor" [Drosophila melanogaster (taxid:7227)]

 Score = 264 (98.0 bits), Expect = 3.8e-21, P = 3.8e-21
 Identities = 49/71 (69%), Positives = 60/71 (84%)

Query:    36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
             L+PAEGA+F+TNYR+IFKG+P DP  CEQV+ R FPI SL KEKKI+  YL+HLDQ+L E
Sbjct:   956 LIPAEGALFLTNYRVIFKGSPCDPLFCEQVIVRTFPIASLLKEKKISVLYLAHLDQTLTE 1015

Query:    96 GYQLRSSTFQV 106
             G QLRSS+FQ+
Sbjct:  1016 GLQLRSSSFQL 1026

GO:0019992 "diacylglycerol binding" evidence=ISS

GO:0008138 "protein tyrosine/serine/threonine phosphatase activity" evidence=ISS

GO:0016311 "dephosphorylation" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0000278 "mitotic cell cycle" evidence=IMP

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IDA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0008023 "transcription elongation factor complex" evidence=IPI

GO:0036313 "phosphatidylinositol 3-kinase catalytic subunit binding" evidence=IPI

GO:0030866 "cortical actin cytoskeleton organization" evidence=IMP

GO:0032456 "endocytic recycling" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0017137 "Rab GTPase binding" evidence=IPI

GO:0055037 "recycling endosome" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IPI

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=ISS;IPI

GO:0019902 "phosphatase binding" evidence=IPI

UNIPROTKB|F1NE84 F1NE84 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 7.3e-19, P = 7.3e-19
 Identities = 50/72 (69%), Positives = 57/72 (79%)

Query:    35 PLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQ 94
             PLLPAEGAIF+T YRIIFKGTP DP   EQVV R+FPI+SL KEKKI  Q  + +DQ +Q
Sbjct:   863 PLLPAEGAIFLTTYRIIFKGTPTDPLVGEQVVIRSFPISSLTKEKKINIQ--AQVDQFIQ 920

Query:    95 EGYQLRSSTFQV 106
             EG QLRS TFQ+
Sbjct:   921 EGLQLRSCTFQL 932

GO:0005543 "phospholipid binding" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=IEA

ZFIN|ZDB-GENE-040718-139 sbf1 "SET binding factor 1" [Danio rerio (taxid:7955)]

 Score = 235 (87.8 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query:    35 PLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQ 94
             PLLPAEGAIF+T+YR+IFKGTP DP   EQVVTR+FP+ SL KEK+I+      +DQ +Q
Sbjct:   911 PLLPAEGAIFLTSYRLIFKGTPTDPLVGEQVVTRSFPVASLTKEKRISVSL--PMDQFIQ 968

Query:    95 EGYQLRSSTFQV 106
             EG QLRS TFQ+
Sbjct:   969 EGLQLRSCTFQL 980

GO:0016311 "dephosphorylation" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-030911-10 sbf2 "SET binding factor 2" [Danio rerio (taxid:7955)]

 Score = 223 (83.6 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
 Identities = 43/71 (60%), Positives = 57/71 (80%)

Query:    36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
             +LPAEGA+F+T YRI+FKGTP DP   EQ V R+FP+++L KEKKIT Q  + L Q++QE
Sbjct:   918 ILPAEGALFLTTYRIVFKGTPHDPLVGEQAVIRSFPVSTLTKEKKITIQ--NQLQQNMQE 975

Query:    96 GYQLRSSTFQV 106
             G QLRS++FQ+
Sbjct:   976 GLQLRSASFQL 986

GO:0016311 "dephosphorylation" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E1C7M2 SBF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 215 (80.7 bits), Expect = 8.6e-17, Sum P(2) = 8.6e-17
 Identities = 44/71 (61%), Positives = 54/71 (76%)

Query:    36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
             +LPAEGA+F+T YRIIFKGTP D    EQ V R+FPI S+ KEKKIT Q  + L QS+QE
Sbjct:   908 ILPAEGALFLTTYRIIFKGTPHDQLVGEQTVIRSFPIASVTKEKKITIQ--NQLQQSMQE 965

Query:    96 GYQLRSSTFQV 106
             G Q+ S+TFQ+
Sbjct:   966 GLQITSATFQL 976

GO:0016791 "phosphatase activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0019208 "phosphatase regulator activity" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

RGD|1588657 Sbf2 "SET binding factor 2" [Rattus norvegicus (taxid:10116)]

 Score = 208 (78.3 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
 Identities = 41/71 (57%), Positives = 54/71 (76%)

Query:    36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
             LLPAEGA+F+T YRI+F+GTP D    EQ V R+FPI S+ KEKKIT Q  + L Q++QE
Sbjct:   863 LLPAEGALFLTTYRILFRGTPHDQLVGEQTVVRSFPIASITKEKKITMQ--NQLQQNMQE 920

Query:    96 GYQLRSSTFQV 106
             G Q+ S++FQ+
Sbjct:   921 GLQITSASFQL 931

GO:0005774 "vacuolar membrane" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0019208 "phosphatase regulator activity" evidence=ISO

GO:0019902 "phosphatase binding" evidence=ISO

GO:0035091 "phosphatidylinositol binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051262 "protein tetramerization" evidence=ISO

UNIPROTKB|F1PZ30 SBF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 208 (78.3 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
 Identities = 41/71 (57%), Positives = 54/71 (76%)

Query:    36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
             LLPAEGA+F+T YRI+F+GTP D    EQ V R+FPI S+ KEKKIT Q  + L Q++QE
Sbjct:   911 LLPAEGALFLTTYRILFRGTPHDQLVGEQTVVRSFPIASITKEKKITMQ--NQLQQNMQE 968

Query:    96 GYQLRSSTFQV 106
             G Q+ S++FQ+
Sbjct:   969 GLQITSASFQL 979

GO:0016791 "phosphatase activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|Q86WG5 SBF2 "Myotubularin-related protein 13" [Homo sapiens (taxid:9606)]

 Score = 208 (78.3 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
 Identities = 41/71 (57%), Positives = 54/71 (76%)

Query:    36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
             LLPAEGA+F+T YRI+F+GTP D    EQ V R+FPI S+ KEKKIT Q  + L Q++QE
Sbjct:   911 LLPAEGALFLTTYRILFRGTPHDQLVGEQTVVRSFPIASITKEKKITMQ--NQLQQNMQE 968

Query:    96 GYQLRSSTFQV 106
             G Q+ S++FQ+
Sbjct:   969 GLQITSASFQL 979

GO:0016791 "phosphatase activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0019208 "phosphatase regulator activity" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042552 "myelination" evidence=NAS

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=IDA

RGD|1307090 Sbf1 "SET binding factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 214 (80.4 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 45/77 (58%), Positives = 56/77 (72%)

Query:    36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
             LLPAEGA+F+T YR+IF G P DP   EQVV R+FP+ +L KEK+I+ Q  + +DQ LQ+
Sbjct:   898 LLPAEGAVFLTTYRVIFTGMPTDPLVGEQVVVRSFPVAALTKEKRISVQ--TPVDQLLQD 955

Query:    96 GYQLRSSTFQVTALTSM 112
             G QLRS TFQ T L  M
Sbjct:   956 GLQLRSCTFQ-TQLLKM 971

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0007283 "spermatogenesis" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016791 "phosphatase activity" evidence=IEA

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=ISO

UNIPROTKB|F1MMR9 SBF2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 207 (77.9 bits), Expect = 6.0e-16, Sum P(2) = 6.0e-16
 Identities = 41/71 (57%), Positives = 54/71 (76%)

Query:    36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
             LLPAEGA+F+T YRI+F+GTP D    EQ V R+FPI S+ KEKKIT Q  + L Q++QE
Sbjct:   911 LLPAEGALFLTTYRILFRGTPHDQLVGEQTVVRSFPIASITKEKKITMQ--NQLQQNMQE 968

Query:    96 GYQLRSSTFQV 106
             G Q+ S++FQ+
Sbjct:   969 GLQVTSASFQL 979

GO:0051262 "protein tetramerization" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

GO:0019208 "phosphatase regulator activity" evidence=IEA

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O95248	MTMR5_HUMAN	No assigned EC number	0.5675	0.6371	0.0385	yes	N/A
Q6ZPE2	MTMR5_MOUSE	No assigned EC number	0.5675	0.6371	0.0385	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	113
cd13208	146	cd13208, PH-GRAM_MTMR5_MTMR13, Myotubularian (MTM)	7e-47
cd13340	185	cd13340, PH-GRAM_MTMR5, Myotubularian (MTM) relate	1e-31
cd13339	184	cd13339, PH-GRAM_MTMR13, Myotubularian (MTM) relat	3e-25
pfam02893	60	pfam02893, GRAM, GRAM domain	1e-05
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	7e-05
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	1e-04

>gnl|CDD|241362 cd13208, PH-GRAM_MTMR5_MTMR13, Myotubularian (MTM) related 5 and 13 proteins (MTMR5 and MTMR13) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  147 bits (372), Expect = 7e-47
 Identities = 56/72 (77%), Positives = 63/72 (87%)

Query: 35  PLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQ 94
           PLLPAEGA+F+TNYRIIFKGTP DP+ACEQ V R+FPI SL KEKKIT QYL+HL+Q LQ
Sbjct: 41  PLLPAEGALFLTNYRIIFKGTPCDPYACEQTVVRSFPIASLTKEKKITVQYLAHLEQKLQ 100

Query: 95  EGYQLRSSTFQV 106
           EG QLRS TFQ+
Sbjct: 101 EGLQLRSCTFQL 112

MTMR5 is a catalytically inactive phosphatase that plays a role as an adapter for the phosphatase myotubularin to regulate myotubularintracellular location. It lacks several amino acids in the dsPTPase catalytic pocket which renders it catalytically inactive as a phosphatase. MTMR5 is the most well-studied inactive member of this family and has been implicated in cellular growth control and oncogenic transformation. MTMR13 is a catalytically inactive phosphatase that plays a role as an adapter for the phosphatase myotubularin to regulate myotubularintracellular location. It contains a Leu residue instead of a conserved Cys residue in the dsPTPase catalytic loop which renders it catalytically inactive as a phosphatase. MTMR13 has high sequence similarity to MTMR5 and has recently been shown to be a second gene mutated in type 4B Charcot-Marie-Tooth syndrome. Both MTMR5 and MTMR13 contain an N-terminal DENN domain, a PH-GRAM domain, an inactive PTP domain, a SET interaction domain, a coiled-coil domain, and a C-terminal PH domain. Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. The PH domain family possesses multiple functions including the ability to bind phosphoinositides via its beta1/beta2, beta3/beta4, and beta6/beta7 connecting loops and to other proteins. However, no phosphoinositide binding sites have been found for the MTMRs to date. Although the majority of the sequences are MTMR 5 and 13, this cd also contains MTM5 nematode sequences. Length = 146

>gnl|CDD|241494 cd13340, PH-GRAM_MTMR5, Myotubularian (MTM) related 5 protein (MTMR5) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  109 bits (274), Expect = 1e-31
 Identities = 48/72 (66%), Positives = 57/72 (79%), Gaps = 2/72 (2%)

Query: 35  PLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQ 94
           PLLPAEGAIF+T YR+IFKGTP DP   EQVV R+FP+ SL KEK+I+ Q  + +DQ LQ
Sbjct: 62  PLLPAEGAIFLTTYRVIFKGTPTDPLVGEQVVVRSFPVASLTKEKRISVQ--AQVDQFLQ 119

Query: 95  EGYQLRSSTFQV 106
           EG QLRS TFQ+
Sbjct: 120 EGLQLRSCTFQL 131

MTMR5 (also called SBF1/SET binding factor 1) is a catalytically inactive phosphatase that plays a role as an adapter for the phosphatase myotubularin to regulate myotubularintracellular location. It lacks several amino acids in the dsPTPase catalytic pocket which renders it catalytically inactive as a phosphatase. MTMR5 is the most well-studied inactive member of this family and has been implicated in cellular growth control and oncogenic transformation. MTMR5 and MTMR13 contain an N-terminal DENN domain, a PH-GRAM domain, an inactive PTP domain, a SET interaction domain, a coiled-coil domain, and a C-terminal PH domain. Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. The PH domain family possesses multiple functions including the ability to bind phosphoinositides via its beta1/beta2, beta3/beta4, and beta6/beta7 connecting loops and to other proteins. However, no phosphoinositide binding sites have been found for the MTMRs to date. Length = 185

>gnl|CDD|241493 cd13339, PH-GRAM_MTMR13, Myotubularian (MTM) related 13 protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 93.1 bits (231), Expect = 3e-25
 Identities = 42/71 (59%), Positives = 54/71 (76%), Gaps = 2/71 (2%)

Query: 36  LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQE 95
           +LPAEGA+F+T YRIIFKGTP D    EQ V R+FPI S+ KEKKIT Q  + L Q++QE
Sbjct: 62  ILPAEGALFLTTYRIIFKGTPHDQLVGEQTVIRSFPIASITKEKKITIQ--NQLQQNMQE 119

Query: 96  GYQLRSSTFQV 106
           G Q+ S++FQ+
Sbjct: 120 GLQITSASFQL 130

MTMR13 (also called SBF2/SET binding factor 2) is a catalytically inactive phosphatase that plays a role as an adapter for the phosphatase myotubularin to regulate myotubularintracellular location. It contains a Leu residue instead of a conserved Cys residue in the dsPTPase catalytic loop which renders it catalytically inactive as a phosphatase. MTMR13 has high sequence similarity to MTMR5 and has recently been shown to be a second gene mutated in type 4B Charcot-Marie-Tooth syndrome. Both MTMR5 and MTMR13 contain an N-terminal DENN domain, a PH-GRAM domain, an inactive PTP domain, a SET interaction domain, a coiled-coil domain, and a C-terminal PH domain. Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. The PH domain family possesses multiple functions including the ability to bind phosphoinositides via its beta1/beta2, beta3/beta4, and beta6/beta7 connecting loops and to other proteins. However, no phosphoinositide binding sites have been found for the MTMRs to date. Length = 184

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 39.5 bits (93), Expect = 1e-05
 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 34 TPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKIT 82
           P+ P +G +++TN R+ F+           +     P+  + + +K  
Sbjct: 17 RPISPVQGRLYLTNNRLCFRSDKFGD-----LTVLVIPLADIERVEKEK 60

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 38.4 bits (90), Expect = 7e-05
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 37 LPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQ 84
           P EG +++TNYR+ FK    D            P+  +++ +K+   
Sbjct: 15 GPVEGTLYLTNYRLYFKSKERDS-----PTELDVPLGVISRVEKVGGS 57

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKIT 82
            P +G ++++NYR+ F+                 P+  + + +K T
Sbjct: 19 TGPVQGRLYISNYRLCFRSNLPGKL-----TKVVIPLADITRIEKST 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
KOG1090|consensus	1732		99.97
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	97.29
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	96.85
KOG3294|consensus	261		95.26
KOG4471|consensus	717		87.77
PF11605	89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	85.18
PF14470	96	bPH_3: Bacterial PH domain	84.18

>KOG1090|consensus

Probab=99.97  E-value=8.3e-33  Score=255.51  Aligned_cols=100  Identities=45%  Similarity=0.640  Sum_probs=90.3

Q ss_pred             cceeeEEEeeeehhhhhcCCC------CCCCCccccccceeeecceeEEeeccCCCccccceeEeceeccccccchhhhh
Q psy5865          10 YSVERLKIRSVYNNIYRRKPA------VPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITS   83 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~------~~Gp~LLPAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki~~   83 (113)
                      +.||-++-.+++-+|+ -|++      .+|++|||||||||||||||||||+||||++|||||||+||++|++|||||++
T Consensus       789 lpGE~lv~D~lrcyLl-pdgrE~e~~~~~~~~LlPAeGalFLTnYRVIFkG~p~Dpl~~eqviVrtfPlasl~keKkisv  867 (1732)
T KOG1090|consen  789 LPGEFLVSDPLRCYLL-PDGRESEMSLNRLENLLPAEGALFLTNYRVIFKGKPVDPLATEQVIVRTFPLASLEKEKKISV  867 (1732)
T ss_pred             cCchhhccCCceEEEe-cCcccccccccccccccccCcceEEeeeEEEecCCCCCcccccceEEEEeehhhhhhhhhhhh
Confidence            4678888888888888 4432      36699999999999999999999999999999999999999999999999996


Q ss_pred             hhhhhhhhhhhhhhhhhchhhhhhhhhc
Q psy5865          84 QYLSHLDQSLQEGYQLRSSTFQVTALTS  111 (113)
Q Consensus        84 ~~~~~~~~~l~eGLQLRS~tfQlikvAF  111 (113)
                      ++ .+.+|.|++|||||||+||++|+||
T Consensus       868 ~~-~~~dQll~~Glqlrs~~fql~k~Af  894 (1732)
T KOG1090|consen  868 KK-LIPDQLLEKGLQLRSIIFQLSKCAF  894 (1732)
T ss_pred             hc-cChHHHHHhcchhhhHHHHHHHhhc
Confidence            44 7788889999999999999999998

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=97.29  E-value=0.0002  Score=44.34  Aligned_cols=41  Identities=20%  Similarity=0.510  Sum_probs=33.4

Q ss_pred             cccccceeeecceeEEeeccCCCccccceeEeceeccccccchhh
Q psy5865          37 LPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKI   81 (113)
Q Consensus        37 LPAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki   81 (113)
                      .|..|.+|+|++++.|.....+...+    ...+|+..|.+.+|+
T Consensus        20 ~~~~G~lyiT~~~l~F~S~~~~~~~~----~~~ipl~~I~~i~k~   60 (61)
T smart00568       20 GPVQGRLYISNYRLCFRSDLPGKLTP----KVVIPLADITRIEKS   60 (61)
T ss_pred             ccccEEEEEECCEEEEEccCCCCeeE----EEEEEHHHeeEEEEC
Confidence            68999999999999999866554322    668899999888775

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=96.85  E-value=0.00095  Score=42.19  Aligned_cols=42  Identities=17%  Similarity=0.398  Sum_probs=30.0

Q ss_pred             ccccccceeeecceeEEeeccCCCccccceeEeceeccccccchhh
Q psy5865          36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKI   81 (113)
Q Consensus        36 LLPAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki   81 (113)
                      -.|..|.||+|++|+.|.....+...    ....+|+..|.+.+|.
T Consensus        27 ~~~~~G~LyiT~~~lcF~s~~~~~~~----~~~~ipl~~I~~i~k~   68 (69)
T PF02893_consen   27 KIPVQGRLYITNNYLCFYSNKFGSKT----CKFVIPLSDIKSIEKE   68 (69)
T ss_dssp             ---EEEEEEEESSEEEEEESSSSS-E-----EEEEEGGGEEEEEEE
T ss_pred             ccceeeEEEECCCEEEEEECCCCCce----EEEEEEhHheeEEEEe
Confidence            67899999999999999985444331    4568899998887764

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>KOG3294|consensus

Probab=95.26  E-value=0.0087  Score=49.69  Aligned_cols=33  Identities=27%  Similarity=0.553  Sum_probs=24.9

Q ss_pred             cccceeeecceeEEeecc-CCCccccceeEeceeccccc
Q psy5865          39 AEGAIFVTNYRIIFKGTP-LDPFACEQVVTRAFPITSLN   76 (113)
Q Consensus        39 AEGAlFLTnYRvIFkG~P-~Dp~~~eq~VvRSfPv~Sl~   76 (113)
                      +.|+||||||||||--.. .|.+.+=+     .|+.++.
T Consensus        47 kkGtlyLTs~RiIFis~~~~D~fksF~-----MPf~~mk   80 (261)
T KOG3294|consen   47 KKGTLYLTSHRIIFISSKPKDAFKSFM-----MPFNLMK   80 (261)
T ss_pred             eeeeEEeecceEEEecCCCCcchhhhc-----chhhhhh
Confidence            579999999999999555 88875544     2666643

>KOG4471|consensus

Probab=87.77  E-value=0.43  Score=44.36  Aligned_cols=40  Identities=25%  Similarity=0.528  Sum_probs=35.2

Q ss_pred             ccccceeeecceeEEeeccCCCccccceeEeceeccccccchhhh
Q psy5865          38 PAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKIT   82 (113)
Q Consensus        38 PAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki~   82 (113)
                      |..|+|.|||||+-||-.+-||     ..+-.+|+.-|.+..|+.
T Consensus        54 ~~~g~l~lsNyRl~fks~~t~~-----~~~~~VPLg~Ie~vek~~   93 (717)
T KOG4471|consen   54 AVDGTLALSNYRLYFKSKETDP-----PFVLDVPLGVIERVEKRG   93 (717)
T ss_pred             cccceEEeeeeEEEEEeccCCC-----ceeEeechhhhhhhhhcC
Confidence            7789999999999999999987     566688999999988887

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes

Probab=85.18  E-value=0.52  Score=32.75  Aligned_cols=35  Identities=23%  Similarity=0.493  Sum_probs=22.4

Q ss_pred             cccceeeecceeEEeeccCCCccccceeEeceeccccccc
Q psy5865          39 AEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKE   78 (113)
Q Consensus        39 AEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~ke   78 (113)
                      -.|.++|||.|+||--- -||-..    --++|+..+.+.
T Consensus        36 q~G~l~LTsHRliw~d~-~~~~~~----s~~l~L~~i~~~   70 (89)
T PF11605_consen   36 QNGRLYLTSHRLIWVDD-SDPSKH----SIALPLSLISHI   70 (89)
T ss_dssp             SCEEEEEESSEEEEEES-SGHCHH-----EEEEGGGEEEE
T ss_pred             cCCEEEEEeeEEEEEcC-CCCcee----EEEEEchHeEEE
Confidence            37999999999999632 133210    126777776654

The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.

>PF14470 bPH_3: Bacterial PH domain

Probab=84.18  E-value=1.3  Score=28.57  Aligned_cols=39  Identities=21%  Similarity=0.341  Sum_probs=28.9

Q ss_pred             ccccccceeeecceeEEeeccCCCccccceeEeceeccccccc
Q psy5865          36 LLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKE   78 (113)
Q Consensus        36 LLPAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~ke   78 (113)
                      .-.-.|.+++||=|+||.+.  ++.-.  ....++|...|++.
T Consensus        19 ~~~~~g~l~~TnkRlif~~~--~~~~~--~~~~~i~y~~I~~v   57 (96)
T PF14470_consen   19 FTSFPGVLVLTNKRLIFYSK--GMFGG--KKFESIPYDDITSV   57 (96)
T ss_pred             ccCceeEEEEeCCEEEEEEc--ccCCC--ceEEEEEhhheEEE
Confidence            44567999999999999988  43322  44689998887653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	113
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	9e-04

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A* Length = 528

 Score = 36.4 bits (83), Expect = 9e-04
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 8/69 (11%)

Query: 38  PAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGY 97
              G + VTNYR+ FK    DP            +  +N+ +KI     +        G 
Sbjct: 31  AVRGTLTVTNYRLYFKSMERDP-----PFVLDASLGVINRVEKIGG---ASSRGENSYGL 82

Query: 98  QLRSSTFQV 106
           +      + 
Sbjct: 83  ETVCKDIRN 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	113
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	97.99
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	97.76
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	97.19
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	95.05
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	93.04

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=97.99  E-value=1.6e-06  Score=74.62  Aligned_cols=88  Identities=20%  Similarity=0.226  Sum_probs=61.3

Q ss_pred             cceeeEEEeeeehhhhhcCCCCCCCCccccccceeeecceeEEeeccCCCccccceeEeceeccccccchhhhhhhhhhh
Q psy5865          10 YSVERLKIRSVYNNIYRRKPAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHL   89 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~Gp~LLPAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki~~~~~~~~   89 (113)
                      +.||-++.+ +.+-+| ..+..     -+.+|.|++||||+||.+.+-|+     .....+|+++|.+.+|+..  . .-
T Consensus        10 LpGE~i~~~-~~~V~~-~~~~~-----~~~~GtL~lTn~rLiF~~~~~~~-----~~~~~iPL~~I~~vek~~~--~-s~   74 (528)
T 1zsq_A           10 LPGENIKDM-AKDVTY-ICPFT-----GAVRGTLTVTNYRLYFKSMERDP-----PFVLDASLGVINRVEKIGG--A-SS   74 (528)
T ss_dssp             CTTCCEEEE-EEEEEE-EETTT-----EEEEEEEEEESSEEEEEESSSSS-----CEEEEEEGGGEEEEEEECC--T-TC
T ss_pred             CCCCeEEEe-cCCEEE-eCCCC-----CceeEEEEEECCEEEEEccCCCc-----cEEEEeeccceEEEEEcCC--C-Cc
Confidence            677877765 333333 22221     27899999999999999986553     3456999999999988752  1 01


Q ss_pred             hhhhhhhhhhhchhhhhhhhhcC
Q psy5865          90 DQSLQEGYQLRSSTFQVTALTSM  112 (113)
Q Consensus        90 ~~~l~eGLQLRS~tfQlikvAF~  112 (113)
                      .....++|+|+...|+.++++|-
T Consensus        75 ~~~~~~~l~I~CKDfr~~~f~f~   97 (528)
T 1zsq_A           75 RGENSYGLETVCKDIRNLRFAHK   97 (528)
T ss_dssp             CSTTCSEEEEEETTTEEEEEECC
T ss_pred             CCCCCceEEEEccCCeEEEEEec
Confidence            11235679999999999888873

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=97.76  E-value=9.2e-06  Score=71.87  Aligned_cols=66  Identities=23%  Similarity=0.303  Sum_probs=48.7

Q ss_pred             cccceeeecceeEEeeccCCCccccceeEeceeccccccchhhhhhhhhhhhhhhhhhhhhhchhhhhhhhhcC
Q psy5865          39 AEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTSM  112 (113)
Q Consensus        39 AEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki~~~~~~~~~~~l~eGLQLRS~tfQlikvAF~  112 (113)
                      .+|.|++||||+||.+.+.|+     ...-.+|+..|.+.+|+... ..  .....++|+|+...|+.++++|-
T Consensus       104 ~~GtL~lTnyrLiF~~~~~~~-----~~~~~IPL~~I~~Iekv~g~-s~--~g~~~~~l~I~CKDfR~~~f~f~  169 (657)
T 1lw3_A          104 VRGTLTVTNYRLYFKSMERDP-----PFVLDASLGVINRVEKIGGA-SS--RGENSYGLETVCKDIRNLRFAHK  169 (657)
T ss_dssp             EEEEEEEESSEEEEEESSSSS-----CEEEEEEGGGEEEEEEECCT-TC--CSTTCSEEEEEETTTEEEEEECC
T ss_pred             eeEEEEEECCEEEEEecCCCc-----ceEEEecccceEEEEecCCC-cc--cCCCCceEEEEecCCcEEEEEeC
Confidence            449999999999999986553     23458999999999887520 00  11235679999999998888773

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=97.19  E-value=0.00013  Score=62.75  Aligned_cols=61  Identities=13%  Similarity=0.166  Sum_probs=42.8

Q ss_pred             cccccceeeecceeEEeeccCCCccccceeEeceeccccccchhhhhhhhhhhhhhhhhhhhhhchhhhhhhhhcC
Q psy5865          37 LPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTSM  112 (113)
Q Consensus        37 LPAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki~~~~~~~~~~~l~eGLQLRS~tfQlikvAF~  112 (113)
                      -|.+|.|++||||+||++.     ..++..+.-.+|++++|.+..+          -..+|+|+...|+.++++|-
T Consensus        23 ~~~~GtL~lTn~~LiF~~~-----~~~e~wi~~~~I~~VeK~~~~~----------~~~~l~I~CKDfr~~~f~f~   83 (512)
T 2yf0_A           23 KSLTGTLYLTATHLLFIDS-----HQKETWILHHHIASVEKLALTT----------SGCPLVIQCKNFRTVHFIVP   83 (512)
T ss_dssp             -CCEEEEEECSSEEEEEES-----SSCEEEEEGGGEEEEEECCCBT----------TBEEEEEEETTSCEEEEEES
T ss_pred             CceeEEEEEECCEEEEeCC-----CCCceEecccceeEEEEecCCC----------CCceEEEEecCCcEEEEEeC
Confidence            4899999999999999982     1234555566777776643221          12458899888888888774

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=95.05  E-value=0.01  Score=42.71  Aligned_cols=33  Identities=15%  Similarity=0.339  Sum_probs=22.6

Q ss_pred             cccceeeecceeEEeeccCCCccccceeEeceecccccc
Q psy5865          39 AEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNK   77 (113)
Q Consensus        39 AEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~k   77 (113)
                      -.|.||||+|||||--.. +   ..+  --++|+..+.+
T Consensus        38 k~G~l~LTshRli~~d~~-~---~~~--s~~lpl~~v~~   70 (140)
T 2hth_B           38 DAGTLLLSTHRLIWRDQK-N---HEC--CMAILLSQIVF   70 (140)
T ss_dssp             CCEEEEEESSEEEEEETT-C---CSC--CEEEEGGGEEE
T ss_pred             cCCEEEEecCEEEEecCC-C---Cce--EEEEEhHHeee
Confidence            889999999999995322 1   222  23777777644

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=93.04  E-value=0.034  Score=40.41  Aligned_cols=40  Identities=28%  Similarity=0.365  Sum_probs=24.6

Q ss_pred             cceeeEEEeeeehhhhhcCCCCCCCCccccccceeeecceeEEe
Q psy5865          10 YSVERLKIRSVYNNIYRRKPAVPRTPLLPAEGAIFVTNYRIIFK   53 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~Gp~LLPAEGAlFLTnYRvIFk   53 (113)
                      +.+|++....=-=.||--|...    .=--.|.+|||||||||-
T Consensus        26 ~~~E~il~~~d~V~Ly~g~~k~----~~~k~G~lyLTshRIIyv   65 (145)
T 2cay_A           26 REGEKDIFIDQSVGLYHGKSKI----LQRQRGRIFLTSQRIIYI   65 (145)
T ss_dssp             CTTCCEEEEEEEEEEEETTEEC----TTCSSEEEEEESSEEEEE
T ss_pred             CCCCEEEEEcCCcceecCCCCC----cCCCccEEEEEcCeEEEe
Confidence            4567766654333344222211    124789999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	113
d1zsqa1	125	b.55.1.8 (A:74-198) Myotubularin-related protein 2	6e-09

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 6e-09
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 8/69 (11%)

Query: 38  PAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGY 97
              G + VTNYR+ FK    DP            +  +N+ +KI        +     G 
Sbjct: 27  AVRGTLTVTNYRLYFKSMERDP-----PFVLDASLGVINRVEKIGGASSRGEN---SYGL 78

Query: 98  QLRSSTFQV 106
           +      + 
Sbjct: 79  ETVCKDIRN 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	113
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	99.36
d2hthb1	129	Vacuolar protein sorting protein 36, VPS36 {Human	95.9
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	93.57

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.9e-14  Score=98.93  Aligned_cols=71  Identities=20%  Similarity=0.207  Sum_probs=58.3

Q ss_pred             CCCccccccceeeecceeEEeeccCCCccccceeEeceeccccccchhhhhhhhhhhhhhhhhhhhhhchhhhhhhhhc
Q psy5865          33 RTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKEKKITSQYLSHLDQSLQEGYQLRSSTFQVTALTS  111 (113)
Q Consensus        33 Gp~LLPAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~keKki~~~~~~~~~~~l~eGLQLRS~tfQlikvAF  111 (113)
                      +|..-|++|+|+|||||+||+|.+.|+.     .+.++|+++|.|.+|+....   ....-.++|||++..|+.++.+|
T Consensus        22 ~p~~~~~~G~L~lTnyrliF~~~~~~~~-----~~~~ipl~~I~~v~k~~~~~---~~~~~~~~L~I~CKDfr~~~f~f   92 (125)
T d1zsqa1          22 CPFTGAVRGTLTVTNYRLYFKSMERDPP-----FVLDASLGVINRVEKIGGAS---SRGENSYGLETVCKDIRNLRFAH   92 (125)
T ss_dssp             ETTTEEEEEEEEEESSEEEEEESSSSSC-----EEEEEEGGGEEEEEEECCTT---CCSTTCSEEEEEETTTEEEEEEC
T ss_pred             ccCCCccceEEEEEeeEEEEEcCCCCcc-----EEEEeccceeeeeeeccccc---ccCCccccEEEEeccCeEEEEEE
Confidence            4555689999999999999999988864     46799999999999987321   22223678999999999999988

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0016  Score=44.53  Aligned_cols=60  Identities=18%  Similarity=0.191  Sum_probs=33.5

Q ss_pred             cccceeeEEEeeeehhhhhcCCCCCCCCccccccceeeecceeEEeeccCCCccccceeEeceeccccccc
Q psy5865           8 LNYSVERLKIRSVYNNIYRRKPAVPRTPLLPAEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKE   78 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~Gp~LLPAEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~ke   78 (113)
                      +=.++|.+.+..=-=-||  ||..-- ..  -.|.+||||+|+||--    ...+++.+  ++|+..|...
T Consensus         8 ll~~~E~~l~~~~~V~ly--dG~~k~-~~--~~G~l~LTthRli~~~----~~~~~~s~--~lpl~~i~~~   67 (129)
T d2hthb1           8 LLEINETLVIQQRGVRIY--DGEEKI-KF--DAGTLLLSTHRLIWRD----QKNHECCM--AILLSQIVFI   67 (129)
T ss_dssp             CCCTTCCEEEEEEEEEEE--ETTCSS-CC--CCEEEEEESSEEEEEE----TTCCSCCE--EEEGGGEEEE
T ss_pred             CCCCCcEEEEEeCCEEee--cCCCcc-cc--cceEEEEEeceEEEec----CCCCceEE--EEEhHHceee
Confidence            335677766643222234  211111 11  4699999999999943    23333422  7888887544

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.57  E-value=0.011  Score=40.83  Aligned_cols=35  Identities=26%  Similarity=0.453  Sum_probs=23.9

Q ss_pred             cccceeeecceeEEeeccCCCccccceeEeceeccccccc
Q psy5865          39 AEGAIFVTNYRIIFKGTPLDPFACEQVVTRAFPITSLNKE   78 (113)
Q Consensus        39 AEGAlFLTnYRvIFkG~P~Dp~~~eq~VvRSfPv~Sl~ke   78 (113)
                      -.|.+||||+||||--.+ +|..  +  --|+|+..|...
T Consensus        43 ~~G~l~LTshRiI~v~~~-~~~~--~--S~slpL~~i~~~   77 (130)
T d2caya1          43 QRGRIFLTSQRIIYIDDA-KPTQ--N--SLGLELDDLAYV   77 (130)
T ss_dssp             SSEEEEEESSEEEEEESS-CHHH--H--CEEEEGGGEEEE
T ss_pred             cCceEEEEeeEEEEecCC-CCce--e--EEEeEhhheeEe
Confidence            589999999999998644 3321  1  236777666543