Psyllid ID: psy5921

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200
MFEDKPTSCNTVDVVGSGSTSSAFSNSLPEANKMEGRAENEHMISSSESYLFTQNKSYDSPTIVAKQTLLPLSGELEKQIISAKSSSTEGSSVVTSYIKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRTEITNKFVHLEAAPVALLEEHRCLFSGLSEWRQRVCLEVTGDATRNVNDIMESFQHIFPKSNFIKPIAKPPTSKSVTRWLERKEAFKRNAGTRSSVSSRVEQKILENEQCSQKGIVDVKCFEESSALERSMKPDDRPSPTRKNKSTRSSFDSDMFPSSSSRESNQSPPNKDSIHEAEITHPDCSKSSQIDFNPDLFKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSNDCISLDCPVLYRKTQITRDLDQLSYVLSLCDSHLALF
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccEEEccccccccccHHHHHHHHHHcccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccHHHHHHHHcccccccccccccccccccccccccEEEcccccccccccccccccEEEEEEEEEccccccccccccccEEEEEEEEEcccccccccEEEEEEccccccccccccccEEEEEccHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHcccccccccccccccccccccccccccEEEEccEEEEEHHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccEEEEcccHHHHHcccccccccEEEccccccccccEEEEEcccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHcccEEEEEEEEccccccEEEEcccEEEcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccHHHHHHHHHHHccccccccccccEEEEEEEcccccccccccccHHHHHHcccccccHHHHHHcccHHHHHHHHHccccccHHHHHHcccccccccccccccccccccHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cccccccccccEEEEccccccHHHHcccccccccccHHHHHHHHHHccccEEEccccccccccccccccccccHHHccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEccccccccccccccHcEccEEEEEcccccccHHHHcccccHHHHHHccccccccccHHHHHcccHHHHHHcccccEEEccccccccccccHHHHHccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccHHccccHHHHHHHHHHcccccccccccccccccccccEEEEEEEHHHHHHcccccccccEEEEEEEEEEcccccccccccccHHHHHHHHHHcccccccEEEEEEEEcccccccccccccEEEEEcccHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHccccccccccccccccEEcccccccccEEEEEccEEEHHHHHHHHHHHcHHHcHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccccccEEEEEEccHHHHHHHHccHHHHHHcccHHHcccccccccccccccccHHHHcccHcHcEEcccccEEEcHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHEEEHHHHccccccEEccccccEEEcHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEccEEEEEccEEEEEEEcccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccEEEEEccccccHHHHccccEEEEccccccccHHHHHHHHHccHHHHHHHHHcccHHHHHHHHcccccEEEEEEEcccccccHHHHHHcccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mfedkptscntvdvvgsgstssafsnslpeankmegraenehmisssesylftqnksydsptivakqtllplsGELEKQIISAkssstegssVVTSYIKLKCKPISRALVVEELINTDvtnilsqepfysnfkdiTRTEITNKFVHLEAAPVALLEEHRCLFSGLSEWRQRVCLEVTGDATRNVNDIMESFqhifpksnfikpiakpptsksvTRWLERKEAFKrnagtrssvssRVEQKILeneqcsqkgivdvkcfeessalersmkpddrpsptrknkstrssfdsdmfpssssresnqsppnkdsiheaeithpdcskssqidfnpdLFKSFIRKQletpkrricdsyaidamtpdttgdyqmglDNLNEVTSHVENYYLTVLAVEIHAISRallkpdpaydeVKAIFYYLytcppeedrkVGIILIGqeselpevrtkpiqmhfvSNEKELFSIFIENVrqwdpdiligyEIETLSWGYLLERGYVLGLNLNQELSRITEVEKrnssrdevkntqlqmpgrIVINLWRLLRHEVNLQSYTFENIMYHVLheriplhswkLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLnnfvavspsikqrahmrapeslplilepesrlytdpiivldfqslypsVIIAYNYCFSTCLgrvehlgvsdsfpfgciDLNVSIRSLKKLQQKltispsgvafvdksircgiLPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGytaanfsgrmpcvevgdSVVSKGRETLQKAIETVNNTSKWQCRvvygdtdsmfvlapgktkQEAFEIGKEIANVvtnnnptpvklkfekvyqpcilqtKKRYVGYMyetadqdkpiyeakgietvrrdgcpAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAkeyrgqagykpgacvpaLSLARQwvltdpraeprvservpyvivsgapglpliklvkspyellqdsslrlnseyyitrviipplercflllgtpvlpwyknlprklhVYLPSvlnerkkkstISQYFASVNCVccnqmtqnnkgvcDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTcvgrstsndcisldcpvlyrktqitrdLDQLSYVLSLCDSHLALF
mfedkptscntvdvvgsgstssafsnSLPEANKMEGRAENEHMISSSESYLFTQNKSYDSPTIVAKQTLLPLSGELEKQIIsakssstegssvVTSYIKLKCKPISRALVVEELINTdvtnilsqepfysNFKDITRTEITNKFVHLEAAPVALLEEHRCLFSGLSEWRQRVCLEVTGDATRNVNDIMESFQHifpksnfikpiakpptsksvtrwLERKEafkrnagtrssvssrveqkileneqcsqkgivdVKCFEESSalersmkpddrpsptrknkstrssfdsdmfpssssresnqsppnKDSIHEAEITHPDCSKSSQIDFNPDLFKSFIRKqletpkrricdsyaIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGqeselpevrtkpIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRItevekrnssrdevkntqlqmpgRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSpsikqrahmrapeslplilePESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKltispsgvafvdkSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAietvnntskwqCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAnvvtnnnptpvklkfekvyqpciLQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFskiisgrisvqDMTFAKEYRGQAGYKPGACVPALSLARQWVLTdpraeprvservpyvivsgapglpliKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCvgrstsndcisldcPVLYRKTQITRDLDQLSYVLSLCDSHLALF
MFEDKPTSCNtvdvvgsgstssafsnsLPEANKMEGRAENEHMISSSESYLFTQNKSYDSPTIVAKQTLLPLSGELEKQIIsakssstegssvvtsYIKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRTEITNKFVHLEAAPVALLEEHRCLFSGLSEWRQRVCLEVTGDATRNVNDIMESFQHIFPKSNFIKPIAKPPTSKSVTRWLERKEAFKRNAGTRSSVSSRVEQKILENEQCSQKGIVDVKCFEESSALERSMKPDDRPSPTRKNKSTrssfdsdmfpssssresnqsppNKDSIHEAEITHPDCSKSSQIDFNPDLFKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAnvvtnnnptpvKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSNDCISLDCPVLYRKTQITRDLDQLSYVLSLCDSHLALF
**************************************************************IVA**TLL**********************VVTSYIKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRTEITNKFVHLEAAPVALLEEHRCLFSGLSEWRQRVCLEVTGDATRNVNDIMESFQHIFPKSNFIKPI***********************************************IVDVKC**********************************************************************FNPDLFKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR********************MPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSI***********LPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSNDCISLDCPVLYRKTQITRDLDQLSYVLSLCDSHL***
*********NTV******************************************************************************************************************************************************************************************NFIKPIA*************************************************************************************************************************DFNPDLFKSFIRKQL********************TGDYQMGLD*******HVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR*******************QMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVA*****************PLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQ*********ALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRG******GACVPALSLARQWVL******PRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPR*********************YFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSNDCISLDCPVLYRKTQITRDLDQLSYVLSLCDSHLALF
***********VDVVGSGSTSSAFSNSLPEANKMEGRAENEHMISSSESYLFTQNKSYDSPTIVAKQTLLPLSGELEKQI*************VTSYIKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRTEITNKFVHLEAAPVALLEEHRCLFSGLSEWRQRVCLEVTGDATRNVNDIMESFQHIFPKSNFIKPIAKPPTSKSVTRWLERKEAFK*************EQKILENEQCSQKGIVDVKCFEESS***********************************************IHEAEITHPDCSKSSQIDFNPDLFKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT************KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSNDCISLDCPVLYRKTQITRDLDQLSYVLSLCDSHLALF
*****PTSCNTVDVVGS***S*****S********GRAENEHMISSSESYLFTQNK************************************VVTSYIKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRTEITNKFVHLEAAPVALLEEHRCLFSGLSEWRQRVCLEVTGDATRNVNDIMESFQHIFPKSNFIKPIAKPPTSKSVTRWLERKE********RSSVSSRVEQKILENEQCS*************************************************************************KSSQIDFNPDLFKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSI****HMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSNDCISLDCPVLYRKTQITRDLDQLSYVLSLCDSHLALF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFEDKPTSCNTVDVVGSGSTSSAFSNSLPEANKMEGRAENEHMISSSESYLFTQNKSYDSPTIVAKQTLLPLSGELEKQIISAKSSSTEGSSVVTSYIKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRTEITNKFVHLEAAPVALLEEHRCLFSGLSEWRQRVCLEVTGDATRNVNDIMESFQHIFPKSNFIKPIAKPPTSKSVTRWLERKEAFKRNAGTRSSVSSRVEQKILENEQCSQKGIVDVKCFEESSALERSMKPDDRPSPTRKNKSTRSSFDSDMFPSSSSRESNQSPPNKDSIHEAEITHPDCSKSSQIDFNPDLFKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSNDCISLDCPVLYRKTQITRDLDQLSYVLSLCDSHLALF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1200 2.2.26 [Sep-21-2011]
Q614933122 DNA polymerase zeta catal yes N/A 0.707 0.271 0.516 0.0
O606733130 DNA polymerase zeta catal yes N/A 0.706 0.270 0.513 0.0
P142841504 DNA polymerase zeta catal yes N/A 0.660 0.527 0.417 1e-173
Q9P6L61480 DNA polymerase zeta catal yes N/A 0.655 0.531 0.384 1e-160
P283391106 DNA polymerase delta cata no N/A 0.631 0.685 0.283 2e-79
P303151094 DNA polymerase delta cata N/A N/A 0.582 0.638 0.297 3e-79
P972831103 DNA polymerase delta cata N/A N/A 0.633 0.689 0.279 1e-78
P524311105 DNA polymerase delta cata no N/A 0.633 0.687 0.278 2e-78
P283401107 DNA polymerase delta cata no N/A 0.635 0.688 0.276 2e-78
P303161086 DNA polymerase delta cata no N/A 0.615 0.679 0.290 5e-78
>sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit OS=Mus musculus GN=Rev3l PE=1 SV=3 Back     alignment and function desciption
 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/877 (51%), Positives = 642/877 (73%), Gaps = 28/877 (3%)

Query: 341  LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 400
            + TPK+   ++  ID  + + T  +++ + NL E  +  E   LT+++VE+HA +R  L+
Sbjct: 2249 VNTPKK---ETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQ 2305

Query: 401  PDPAYDEVKAIFYYLYTCPP----EEDRKVGIILIGQESELP--EVRTKP---------- 444
            PDP +D + A+FY + +  P    E+    G+I+I ++  +   ++R++           
Sbjct: 2306 PDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTHQDIRSQTPLLIRSGITG 2365

Query: 445  IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
            +++ + ++EK LF      ++++DPDIL+GYEI+  SWGYLL+R   L ++L Q +SR+ 
Sbjct: 2366 LEVTYAADEKALFQEITNIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVP 2425

Query: 505  E--VEKR-NSSRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
            +  +E R  + RD+  +   +++ + GRI +NLWR++R+EV L +YTFEN+ +HVLH+R 
Sbjct: 2426 DDKIENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRF 2485

Query: 559  PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
            PL ++++L+ W++++T LY+W  V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF  
Sbjct: 2486 PLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLH 2545

Query: 619  VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 678
            VL+RGSQ+RVES+MLR+++  N++ V+PSI+QR+ MRAP+ +PLI+EPESR Y++ ++VL
Sbjct: 2546 VLTRGSQYRVESMMLRIAKPMNYIPVTPSIQQRSQMRAPQCVPLIMEPESRFYSNSVLVL 2605

Query: 679  DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSG 738
            DFQSLYPS++IAYNYCFSTCLG VE+LG  D F FGC  L V    L +++  +T+SP+G
Sbjct: 2606 DFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQIRHDVTVSPNG 2665

Query: 739  VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG 798
            VAFV  S+R G+LP+ML+EIL TRLMVKQSMK YK + AL R+L+ARQLGLKLIANVT+G
Sbjct: 2666 VAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKSYKQDRALSRMLNARQLGLKLIANVTFG 2725

Query: 799  YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
            YTAANFSGRMPC+EVGDS+V K RETL++AI+ VN+T KW  RVVYGDTDSMFVL  G T
Sbjct: 2726 YTAANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGAT 2785

Query: 859  KQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAK 918
            K+++F+IG+EIA  VT  NP PVKLKFEKVY PC+LQTKKRYVGYMYET DQ +P+++AK
Sbjct: 2786 KEQSFKIGQEIAEAVTATNPRPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKEPVFDAK 2845

Query: 919  GIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
            GIETVRRD CPAVSKIL++SL LLFET+D+S++K+YV++Q  K++ G+ S+QD  FAKEY
Sbjct: 2846 GIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLVEGKASIQDFIFAKEY 2905

Query: 979  RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELL 1038
            RG   Y+PGACVPAL L R+ +  D R+EPRV ERVPYVI+ G PGLPLI+L++ P E+L
Sbjct: 2906 RGSFSYRPGACVPALELTRKMLAYDRRSEPRVGERVPYVIIYGTPGLPLIQLIRRPAEVL 2965

Query: 1039 QDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTI 1098
            QD +LRLN+ YYIT+ I+PPL R F L+G  V  WY+ LPR       S      +K TI
Sbjct: 2966 QDPTLRLNATYYITKQILPPLARIFSLIGIDVFSWYQELPRIQKATSSSRSELEGRKGTI 3025

Query: 1099 SQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVG 1158
            SQYF +++C  C+ +TQ+  G+C  C +Q Q +   L  +I+  +R Q+Q+ K+C  C G
Sbjct: 3026 SQYFTTLHCPVCDDLTQH--GICSKCRSQPQHVAIILNQEIRELERKQEQLIKICRNCTG 3083

Query: 1159 RSTSN-DCISLDCPVLYRKTQITRDLDQLSYVLSLCD 1194
                +  C+SL+CPVL++ +++ R+L +  Y+  L D
Sbjct: 3084 SFDRHIPCVSLNCPVLFKLSRVNRELSKAPYLRQLLD 3120
Interacts with MAD2L2 to form the error prone DNA polymerase zeta involved in translesion DNA synthesis.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7
>sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1 SV=2 Back     alignment and function description
>sp|P14284|DPOZ_YEAST DNA polymerase zeta catalytic subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REV3 PE=1 SV=1 Back     alignment and function description
>sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1 Back     alignment and function description
>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1 SV=1 Back     alignment and function description
>sp|P30315|DPOD1_PLAFK DNA polymerase delta catalytic subunit OS=Plasmodium falciparum (isolate K1 / Thailand) GN=POLD1 PE=3 SV=1 Back     alignment and function description
>sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus GN=POLD1 PE=2 SV=1 Back     alignment and function description
>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1 PE=1 SV=2 Back     alignment and function description
>sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1 PE=1 SV=2 Back     alignment and function description
>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1200
157124378 2080 DNA polymerase zeta catalytic subunit [A 0.892 0.514 0.480 0.0
242006490 2605 DNA polymerase zeta catalytic subunit, p 0.870 0.401 0.484 0.0
328718109 1485 PREDICTED: DNA polymerase zeta catalytic 0.675 0.545 0.565 0.0
189234256 1518 PREDICTED: similar to DNA polymerase zet 0.685 0.541 0.581 0.0
347965478 2191 AGAP013386-PA [Anopheles gambiae str. PE 0.885 0.485 0.454 0.0
170055192 1959 DNA polymerase zeta catalytic subunit [C 0.895 0.548 0.477 0.0
334324484 3156 PREDICTED: LOW QUALITY PROTEIN: DNA poly 0.707 0.269 0.519 0.0
395534778 3136 PREDICTED: DNA polymerase zeta catalytic 0.707 0.270 0.521 0.0
6978946 3122 DNA polymerase [Mus musculus] 0.707 0.271 0.516 0.0
153792337 3122 DNA polymerase zeta catalytic subunit [M 0.707 0.271 0.516 0.0
>gi|157124378|ref|XP_001660448.1| DNA polymerase zeta catalytic subunit [Aedes aegypti] gi|108874011|gb|EAT38236.1| AAEL009851-PA [Aedes aegypti] Back     alignment and taxonomy information
 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1153 (48%), Positives = 744/1153 (64%), Gaps = 82/1153 (7%)

Query: 100  LKCKPISRALVVEELINTDVTNILSQEPFYSNFKDIT-RTEITNKFVHLEAAPVALLEEH 158
            L+ KP S A  ++ +    +  ++ QEPFYSN  D+T R E+ +  +++    +  +EE 
Sbjct: 949  LQEKPPSMADALKAIQEFTIPQVIHQEPFYSNPVDVTGRKEVGHIVLNIGGNSLNDMEEF 1008

Query: 159  RCLFSGLS---EWRQRVCLEVTGDATRNV------------NDIMESFQHIFPKSNFIKP 203
              + S ++    +R +    + GD+   +             +++ + Q +      + P
Sbjct: 1009 HSVVSDMNSINNFRHKKLSAIYGDSLSAILGDSSRPDAGKMRELLATEQSVI-----VVP 1063

Query: 204  IAKPPTSKSVTRWLERKEAFKRNAGT----RSSVSSRVEQKILENE-QCSQKGIVDVKCF 258
             AKPP+      WL+  E  K          S +  +  Q I+  E   S +    +K  
Sbjct: 1064 AAKPPSKHEAKVWLKAMEKIKTEEAVPVEQDSPIKIKKMQAIMVGEGTTSTQEAQSIKID 1123

Query: 259  EESSALERSMKPDDRPSPTRKNKSTRSSFDSDMFPSSSSRESNQSPPNKDSIHEAEITHP 318
             +S+    S+   D P     + S RS+  S +F  ++     +S P     HE    + 
Sbjct: 1124 HDSTLNLSSLITADNPV----DSSARSTLVSKIFSMNT-----KSSPAMRLDHE----NG 1170

Query: 319  DCSKSSQIDFNPDLFKSFIRKQLETPKRRIC--DSYAIDAMTPDT-TGDYQMGLDNLNEV 375
              S SS  +    L  S  RK+ +T K R+    S  I A+TP+  T  +++  +NL + 
Sbjct: 1171 SPSVSSGKEHLELLSYSARRKRRKTMKARLSLKHSGNISAVTPNNNTYGFKVNYENLQKA 1230

Query: 376  TSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKV----GIILI 431
             +  E  +LT+++VE+H  +R  L+P+P  D + AIFY ++   PE+ R+     GIIL 
Sbjct: 1231 KATCEYNFLTIMSVEVHIQTRGELRPNPEIDPISAIFYRIHNDVPEDHRRAPSVCGIILN 1290

Query: 432  GQESELPEVRTKPIQMH---------FVSNEKELFSIFIENVRQWDPDILIGYEIETLSW 482
             +       R  P + +          VSNE+EL+  F+  +  WDPDI  GYEIE  SW
Sbjct: 1291 HEHGLAATDRLDPYKYNKCNYMADVVTVSNERELYEKFLMLISFWDPDIFAGYEIEQASW 1350

Query: 483  GYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVK--------NTQLQMPGRIVINLWRL 534
            GY+++RGY L +NL + LSR+   EK + S +E +        +  L++PGRI++++WRL
Sbjct: 1351 GYIIQRGYSLEMNLMKMLSRVPTAEKVHVSEEEEQELLEMHEYSAGLKIPGRILLDIWRL 1410

Query: 535  LRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIR 594
            +RHE+ L SYTFENI++H+LH R+  H++K LT  W       KW+ +E+YL RV G + 
Sbjct: 1411 MRHEIALTSYTFENIVFHILHRRVSCHAFKQLTRLWN--KPYSKWIVLEYYLERVNGNLE 1468

Query: 595  LIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHM 654
            L+ QLD IGRT+E+A+LFGIQFYEVLSRGSQFRVES+MLR+++  NFV+VSPSI+QRAHM
Sbjct: 1469 LLHQLDLIGRTAELAKLFGIQFYEVLSRGSQFRVESMMLRIAKPRNFVSVSPSIQQRAHM 1528

Query: 655  RAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFG 714
            RAPE LPLILEPESR Y DP+IVLDFQSLYPS+IIAYNYCFSTCLGRVEHLG S+ F FG
Sbjct: 1529 RAPEYLPLILEPESRFYADPLIVLDFQSLYPSMIIAYNYCFSTCLGRVEHLGQSEPFEFG 1588

Query: 715  CIDLNVSIRSLKKLQQK--LTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEY 772
               L +S R LK L +K  +TISP G+AFV  S+R GILP+ML EIL TRLMVK SMK +
Sbjct: 1589 ASHLRLSPRMLKVLVEKNLITISPCGIAFVKSSVREGILPRMLNEILTTRLMVKGSMKLH 1648

Query: 773  KSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETV 832
            K N+ LQRVLH+RQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETL++AI+ V
Sbjct: 1649 KENSILQRVLHSRQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLERAIKMV 1708

Query: 833  NNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPC 892
              + +W  +VVYGDTDS+FVL PG+TK++AF+IG EIA+ VT +NP PVKLK EKVYQP 
Sbjct: 1709 ETSERWGAKVVYGDTDSLFVLCPGRTKEQAFKIGAEIADAVTKDNPPPVKLKLEKVYQPS 1768

Query: 893  ILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVK 952
            ILQTKKRYVGYMYET DQ+KP+YEAKGIETVRRDGCP VSK+L+K L +LFET+D+S VK
Sbjct: 1769 ILQTKKRYVGYMYETPDQEKPVYEAKGIETVRRDGCPVVSKMLEKVLRILFETRDVSKVK 1828

Query: 953  EYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSE 1012
            EY  +QFSKI+ GR+++QD  +AKE+RG+ GYKPGACVPAL L R+W + DPR EPR  +
Sbjct: 1829 EYTCRQFSKILEGRVNLQDFIYAKEFRGEDGYKPGACVPALELTRRWKVVDPRREPRRGQ 1888

Query: 1013 RVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLP 1072
            RVPYVI++G P +PLI+LV+SP ELL D+ L++NS YYI + IIPPL RC LL+G  V  
Sbjct: 1889 RVPYVIINGPPLVPLIRLVRSPDELLADNGLKINSNYYIGKAIIPPLNRCLLLIGADVNQ 1948

Query: 1073 WYKNLPRKLHVY---------LPSVLNERKKKSTISQYFASVNCV--CCNQMTQNNKGVC 1121
            WY ++PRK  +          L S L +  KKSTISQYF++ +C+  C N   Q++ GVC
Sbjct: 1949 WYNDMPRKYQLLHNTGGKRSSLASEL-QLPKKSTISQYFSTTSCIGDCGN---QSHSGVC 2004

Query: 1122 DACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSNDCISLDCPVLYRKTQITR 1181
              C  + Q   T +  KI   +R  +   K+C +C  R+    CISLDCPVL+   Q TR
Sbjct: 2005 TECRKRPQRTVTYVMDKINRLERRVELCEKMCRSCCQRNFETACISLDCPVLFVLNQRTR 2064

Query: 1182 DLDQLSYVLSLCD 1194
            +  Q+ Y   L +
Sbjct: 2065 EYAQVQYYRDLLE 2077

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242006490|ref|XP_002424083.1| DNA polymerase zeta catalytic subunit, putative [Pediculus humanus corporis] gi|212507389|gb|EEB11345.1| DNA polymerase zeta catalytic subunit, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|328718109|ref|XP_001949189.2| PREDICTED: DNA polymerase zeta catalytic subunit-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|189234256|ref|XP_001811647.1| PREDICTED: similar to DNA polymerase zeta catalytic subunit [Tribolium castaneum] gi|270002615|gb|EEZ99062.1| hypothetical protein TcasGA2_TC004938 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|347965478|ref|XP_003435770.1| AGAP013386-PA [Anopheles gambiae str. PEST] gi|333470492|gb|EGK97643.1| AGAP013386-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|170055192|ref|XP_001863472.1| DNA polymerase zeta catalytic subunit [Culex quinquefasciatus] gi|167875216|gb|EDS38599.1| DNA polymerase zeta catalytic subunit [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|334324484|ref|XP_003340527.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit-like [Monodelphis domestica] Back     alignment and taxonomy information
>gi|395534778|ref|XP_003769414.1| PREDICTED: DNA polymerase zeta catalytic subunit [Sarcophilus harrisii] Back     alignment and taxonomy information
>gi|6978946|dbj|BAA90768.1| DNA polymerase [Mus musculus] Back     alignment and taxonomy information
>gi|153792337|ref|NP_035394.2| DNA polymerase zeta catalytic subunit [Mus musculus] gi|341940501|sp|Q61493.3|DPOLZ_MOUSE RecName: Full=DNA polymerase zeta catalytic subunit; AltName: Full=Protein reversionless 3-like; Short=REV3-like; AltName: Full=Seizure-related protein 4 Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1200
UNIPROTKB|F1P7E83058 REV3L "DNA polymerase" [Canis 0.623 0.244 0.548 8.3e-264
MGI|MGI:13371313122 Rev3l "REV3-like, catalytic su 0.623 0.239 0.549 2.9e-263
UNIPROTKB|F1P7D53136 REV3L "DNA polymerase" [Canis 0.623 0.238 0.548 2.1e-262
UNIPROTKB|E1BPY83133 REV3L "DNA polymerase" [Bos ta 0.623 0.238 0.548 8.8e-262
UNIPROTKB|F1LMP63118 Rev3l "DNA polymerase" [Rattus 0.623 0.239 0.544 2.3e-260
UNIPROTKB|F1M8G63132 Rev3l "DNA polymerase" [Rattus 0.623 0.238 0.544 3.4e-260
UNIPROTKB|O606733130 REV3L "DNA polymerase zeta cat 0.622 0.238 0.547 1.4e-258
FB|FBgn00028912130 mus205 "mutagen-sensitive 205" 0.713 0.401 0.523 2.3e-257
UNIPROTKB|F1NQT03100 REV3L "DNA polymerase" [Gallus 0.622 0.240 0.540 3.2e-256
ZFIN|ZDB-GENE-050302-552953 rev3l "REV3-like, catalytic su 0.620 0.252 0.549 6e-241
UNIPROTKB|F1P7E8 REV3L "DNA polymerase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 2241 (793.9 bits), Expect = 8.3e-264, Sum P(3) = 8.3e-264
 Identities = 415/757 (54%), Positives = 571/757 (75%)

Query:   445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
             +++ +  +EK LF    + ++++DPDIL+GYEI+  SWGYLL+R   L ++L Q +SR+ 
Sbjct:  2302 LEVTYAPDEKALFQEIADIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLGQMISRVP 2361

Query:   505 E--VEKRNS-SRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
             +  +E R +  RD+  +   +++ + GRI +NLWR++R+EV L +YTFEN+ +HVLH+R 
Sbjct:  2362 DDKIENRFAPERDDYGSETMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRF 2421

Query:   559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
             PL ++++L+ W++++T LY+W  V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF  
Sbjct:  2422 PLFTFRVLSDWFDNKTDLYRWKMVDHYISRVRGNLQMLEQLDLIGKTSEMARLFGIQFLH 2481

Query:   619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 678
             VL+RGSQ+RVES+MLR+++  N++ V+PS++QR+ MRAP+ +PLI+EPESR Y++ ++VL
Sbjct:  2482 VLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVL 2541

Query:   679 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSG 738
             DFQSLYPS++IAYNYCFSTCLG VE+LG  D F FGC  L V    L +++  +T+SP+G
Sbjct:  2542 DFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQIRHDITVSPNG 2601

Query:   739 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG 798
             +AFV  S+R G+LP+ML+EIL TRLMVKQSMK YK + AL R+L ARQLGLKLIANVT+G
Sbjct:  2602 IAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFG 2661

Query:   799 YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
             YTAANFSGRMPC+EVGDS+V K RETL++AI+ VN+T KW  RVVYGDTDSMFVL  G T
Sbjct:  2662 YTAANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGAT 2721

Query:   859 KQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAK 918
             K+++F+IG+EIA           KLKFEKVY PC+LQTKKRYVGYMYET DQ  P+++AK
Sbjct:  2722 KEQSFKIGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAK 2781

Query:   919 GIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
             GIETVRRD CPAVSKIL++SL LLFET+D+S++K+YV++Q  K++ G+ S+QD  FAKEY
Sbjct:  2782 GIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLLEGKASIQDFIFAKEY 2841

Query:   979 RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELL 1038
             RG + YKPGACVPAL L R+ +  D R+EPRV ERVPYVI+ G PG+PLI+LV+ P E+L
Sbjct:  2842 RGSSSYKPGACVPALELTRKMLTYDRRSEPRVGERVPYVIIYGTPGVPLIQLVRRPVEVL 2901

Query:  1039 QDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTI 1098
             QD +LRLN+ YYIT+ I+PPL R F L+G  V  WY  LPR       S      +K TI
Sbjct:  2902 QDPTLRLNATYYITKQILPPLARIFSLIGIDVFNWYHELPRIQKATSSSRSEPEGRKGTI 2961

Query:  1099 SQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVG 1158
             SQYF +++C  C+ +TQ+  G+C  C +Q Q +   L  +I+  +R Q+Q+ K+C  C G
Sbjct:  2962 SQYFTTLHCPVCDDLTQH--GICSKCRSQPQHVAVILNQEIRELERKQEQLVKICKNCTG 3019

Query:  1159 RSTSN-DCISLDCPVLYRKTQITRDLDQLSYVLSLCD 1194
                 +  C+SL+CPVL++ +++ R+L +  Y+  L D
Sbjct:  3020 CFDRHIPCVSLNCPVLFKLSRVNRELSKAPYLRQLLD 3056
GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA
GO:0006260 "DNA replication" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
MGI|MGI:1337131 Rev3l "REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7D5 REV3L "DNA polymerase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPY8 REV3L "DNA polymerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LMP6 Rev3l "DNA polymerase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M8G6 Rev3l "DNA polymerase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O60673 REV3L "DNA polymerase zeta catalytic subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0002891 mus205 "mutagen-sensitive 205" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQT0 REV3L "DNA polymerase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050302-55 rev3l "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q61493DPOLZ_MOUSE2, ., 7, ., 7, ., 70.51650.70750.2719yesN/A
O60673DPOLZ_HUMAN2, ., 7, ., 7, ., 70.51360.70660.2709yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.691
4th Layer2.7.7.70.737

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1200
cd05534451 cd05534, POLBc_zeta, DNA polymerase type-B zeta su 0.0
COG0417792 COG0417, PolB, DNA polymerase elongation subunit ( 1e-107
PTZ001661054 PTZ00166, PTZ00166, DNA polymerase delta catalytic 1e-106
pfam00136458 pfam00136, DNA_pol_B, DNA polymerase family B 8e-92
cd05533393 cd05533, POLBc_delta, DNA polymerase type-B delta 1e-81
cd00145323 cd00145, POLBc, DNA polymerase type-B family catal 9e-79
smart00486474 smart00486, POLBc, DNA polymerase type-B family 2e-77
cd05778231 cd05778, DNA_polB_zeta_exo, inactive DEDDy 3'-5' e 3e-66
cd05532400 cd05532, POLBc_alpha, DNA polymerase type-B alpha 9e-53
PRK05762786 PRK05762, PRK05762, DNA polymerase II; Reviewed 2e-51
TIGR005921172 TIGR00592, pol2, DNA polymerase (pol2) 5e-50
cd05536371 cd05536, POLBc_B3, DNA polymerase type-B B3 subfam 7e-39
cd05160199 cd05160, DEDDy_DNA_polB_exo, DEDDy 3'-5' exonuclea 4e-26
cd05537371 cd05537, POLBc_Pol_II, DNA polymerase type-II subf 1e-21
PRK05761787 PRK05761, PRK05761, DNA polymerase I; Reviewed 2e-20
PHA030361004 PHA03036, PHA03036, DNA polymerase; Provisional 2e-18
cd05531352 cd05531, POLBc_B2, DNA polymerase type-B B2 subfam 4e-17
pfam03104254 pfam03104, DNA_pol_B_exo1, DNA polymerase family B 5e-16
cd05777230 cd05777, DNA_polB_delta_exo, DEDDy 3'-5' exonuclea 3e-12
cd05530372 cd05530, POLBc_B1, DNA polymerase type-B B1 subfam 3e-11
pfam1426073 pfam14260, zf-C4pol, C4-type zinc-finger of DNA po 4e-11
cd05780195 cd05780, DNA_polB_Kod1_like_exo, DEDDy 3'-5' exonu 6e-11
PHA02528881 PHA02528, 43, DNA polymerase; Provisional 1e-10
cd05538347 cd05538, POLBc_Pol_II_B, DNA polymerase type-II B 1e-08
cd05784193 cd05784, DNA_polB_II_exo, DEDDy 3'-5' exonuclease 1e-06
cd05781188 cd05781, DNA_polB_B3_exo, DEDDy 3'-5' exonuclease 2e-06
cd05776234 cd05776, DNA_polB_alpha_exo, inactive DEDDy 3'-5' 5e-05
TIGR00592 1172 TIGR00592, pol2, DNA polymerase (pol2) 6e-04
cd05779204 cd05779, DNA_polB_epsilon_exo, DEDDy 3'-5' exonucl 0.004
>gnl|CDD|99917 cd05534, POLBc_zeta, DNA polymerase type-B zeta subfamily catalytic domain Back     alignment and domain information 
 Score =  754 bits (1949), Expect = 0.0
 Identities = 285/451 (63%), Positives = 353/451 (78%), Gaps = 4/451 (0%)

Query: 623  GSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQS 682
            GSQFRVES++LRL++  N++  SPS +Q A  RA E LPL++EPES  Y+DP+IVLDFQS
Sbjct: 1    GSQFRVESMLLRLAKPENYILPSPSRQQVAQQRALECLPLVMEPESGFYSDPVIVLDFQS 60

Query: 683  LYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQK--LTISPSGVA 740
            LYPS++IAYNYC+STCLGRVE L     F F  + L +    L  L  K  +TISP+GV 
Sbjct: 61   LYPSIMIAYNYCYSTCLGRVEELNGGGKFGFLGVKLYLPPPPLDLLLLKDDVTISPNGVM 120

Query: 741  FVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYT 800
            FV KS+R GILPKML+EILDTR+MVK++MK+YK +  LQR+L ARQL LKL+ANVTYGYT
Sbjct: 121  FVKKSVRKGILPKMLEEILDTRIMVKKAMKKYKDDKKLQRILDARQLALKLLANVTYGYT 180

Query: 801  AANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQ 860
            AA+FSGRMPCVE+ DS+V  GRETL++AIE + +T KW  +VVYGDTDS+FVL PG+TK+
Sbjct: 181  AASFSGRMPCVEIADSIVQTGRETLERAIELIESTPKWGAKVVYGDTDSLFVLLPGRTKE 240

Query: 861  EAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGI 920
            EAF+IGKEIA  VT  NP+P+KLKFEKVY PC+L TKKRYVGY YE+ DQ +P ++AKGI
Sbjct: 241  EAFKIGKEIAEAVTAANPSPIKLKFEKVYHPCVLVTKKRYVGYKYESPDQTEPTFDAKGI 300

Query: 921  ETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRG 980
            ETVRRDGCPAV KIL+KSL +LFETKDLS VK Y+++Q+SK++ GR+S+QD  FAKE R 
Sbjct: 301  ETVRRDGCPAVQKILEKSLRILFETKDLSTVKSYLQRQWSKLLQGRVSIQDFIFAKEVRL 360

Query: 981  QAGYKPGACVPALSL-ARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQ 1039
               YK GA +PA ++ A + +  DPRAEP+  ERVPYV+V G PG  LI LV SP E L 
Sbjct: 361  GT-YKEGATLPAGAIVALRRMEKDPRAEPQYGERVPYVVVRGEPGSRLIDLVVSPEEFLA 419

Query: 1040 DSSLRLNSEYYITRVIIPPLERCFLLLGTPV 1070
            D SLRL++EYYIT+ IIP L+R F L+G  V
Sbjct: 420  DPSLRLDAEYYITKQIIPALDRLFNLVGVDV 450

DNA polymerase (Pol) zeta is a member of the eukaryotic B-family of DNA polymerases and distantly related to DNA Pol delta. Pol zeta plays a major role in translesion replication and the production of either spontaneous or induced mutations. Apart from its role in translesion replication, Pol zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen. Length = 451
>gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit; Provisional Back     alignment and domain information
>gnl|CDD|215742 pfam00136, DNA_pol_B, DNA polymerase family B Back     alignment and domain information
>gnl|CDD|99916 cd05533, POLBc_delta, DNA polymerase type-B delta subfamily catalytic domain Back     alignment and domain information
>gnl|CDD|99912 cd00145, POLBc, DNA polymerase type-B family catalytic domain Back     alignment and domain information
>gnl|CDD|214691 smart00486, POLBc, DNA polymerase type-B family Back     alignment and domain information
>gnl|CDD|99821 cd05778, DNA_polB_zeta_exo, inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase Back     alignment and domain information
>gnl|CDD|99915 cd05532, POLBc_alpha, DNA polymerase type-B alpha subfamily catalytic domain Back     alignment and domain information
>gnl|CDD|235595 PRK05762, PRK05762, DNA polymerase II; Reviewed Back     alignment and domain information
>gnl|CDD|233037 TIGR00592, pol2, DNA polymerase (pol2) Back     alignment and domain information
>gnl|CDD|99919 cd05536, POLBc_B3, DNA polymerase type-B B3 subfamily catalytic domain Back     alignment and domain information
>gnl|CDD|176646 cd05160, DEDDy_DNA_polB_exo, DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>gnl|CDD|99920 cd05537, POLBc_Pol_II, DNA polymerase type-II subfamily catalytic domain Back     alignment and domain information
>gnl|CDD|235594 PRK05761, PRK05761, DNA polymerase I; Reviewed Back     alignment and domain information
>gnl|CDD|222962 PHA03036, PHA03036, DNA polymerase; Provisional Back     alignment and domain information
>gnl|CDD|99914 cd05531, POLBc_B2, DNA polymerase type-B B2 subfamily catalytic domain Back     alignment and domain information
>gnl|CDD|217371 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease domain Back     alignment and domain information
>gnl|CDD|99820 cd05777, DNA_polB_delta_exo, DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase Back     alignment and domain information
>gnl|CDD|99913 cd05530, POLBc_B1, DNA polymerase type-B B1 subfamily catalytic domain Back     alignment and domain information
>gnl|CDD|222632 pfam14260, zf-C4pol, C4-type zinc-finger of DNA polymerase delta Back     alignment and domain information
>gnl|CDD|99823 cd05780, DNA_polB_Kod1_like_exo, DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>gnl|CDD|177369 PHA02528, 43, DNA polymerase; Provisional Back     alignment and domain information
>gnl|CDD|99921 cd05538, POLBc_Pol_II_B, DNA polymerase type-II B subfamily catalytic domain Back     alignment and domain information
>gnl|CDD|99827 cd05784, DNA_polB_II_exo, DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases Back     alignment and domain information
>gnl|CDD|99824 cd05781, DNA_polB_B3_exo, DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>gnl|CDD|99819 cd05776, DNA_polB_alpha_exo, inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase Back     alignment and domain information
>gnl|CDD|233037 TIGR00592, pol2, DNA polymerase (pol2) Back     alignment and domain information
>gnl|CDD|99822 cd05779, DNA_polB_epsilon_exo, DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1200
KOG0968|consensus1488 100.0
PTZ001661054 DNA polymerase delta catalytic subunit; Provisiona 100.0
KOG0970|consensus1429 100.0
KOG0969|consensus1066 100.0
TIGR005921172 pol2 DNA polymerase (pol2). This family is based o 100.0
PHA030361004 DNA polymerase; Provisional 100.0
PRK05762786 DNA polymerase II; Reviewed 100.0
PHA02528881 43 DNA polymerase; Provisional 100.0
COG0417792 PolB DNA polymerase elongation subunit (family B) 100.0
PRK05761787 DNA polymerase I; Reviewed 100.0
cd05534451 POLBc_zeta DNA polymerase type-B zeta subfamily ca 100.0
cd05533393 POLBc_delta DNA polymerase type-B delta subfamily 100.0
cd05532400 POLBc_alpha DNA polymerase type-B alpha subfamily 100.0
cd05536371 POLBc_B3 DNA polymerase type-B B3 subfamily cataly 100.0
PF00136466 DNA_pol_B: DNA polymerase family B Several related 100.0
cd05537371 POLBc_Pol_II DNA polymerase type-II subfamily cata 100.0
cd05530372 POLBc_B1 DNA polymerase type-B B1 subfamily cataly 100.0
cd00145323 POLBc DNA polymerase type-B family catalytic domai 100.0
smart00486471 POLBc DNA polymerase type-B family. DNA polymerase 100.0
cd05538347 POLBc_Pol_II_B DNA polymerase type-II B subfamily 100.0
cd05531352 POLBc_B2 DNA polymerase type-B B2 subfamily cataly 100.0
PHA03334 1545 putative DNA polymerase catalytic subunit; Provisi 100.0
PHA02524498 43A DNA polymerase subunit A; Provisional 100.0
KOG1798|consensus 2173 100.0
cd05535621 POLBc_epsilon DNA polymerase type-B epsilon subfam 100.0
cd05778231 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease 100.0
cd05777230 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain 100.0
PHA02523391 43B DNA polymerase subunit B; Provisional 100.0
cd05776234 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas 100.0
cd05780195 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom 99.97
TIGR00592 1172 pol2 DNA polymerase (pol2). This family is based o 99.97
PF03104325 DNA_pol_B_exo1: DNA polymerase family B, exonuclea 99.96
cd05781188 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of 99.96
cd05784193 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of 99.96
cd05779204 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai 99.95
cd05785207 DNA_polB_like2_exo Uncharacterized bacterial subgr 99.95
cd05160199 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain 99.95
cd05783204 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of 99.91
PHA02563630 DNA polymerase; Provisional 99.85
cd05782208 DNA_polB_like1_exo Uncharacterized bacterial subgr 99.79
PF10108209 DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate 99.44
PF1426073 zf-C4pol: C4-type zinc-finger of DNA polymerase de 99.27
PF13482164 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 99.03
COG3359278 Predicted exonuclease [DNA replication, recombinat 98.6
PF08996188 zf-DNA_Pol: DNA Polymerase alpha zinc finger; Inte 98.46
PHA02735716 putative DNA polymerase type B; Provisional 97.84
PRK06309232 DNA polymerase III subunit epsilon; Validated 97.81
TIGR03491457 RecB family nuclease, putative, TM0106 family. Mem 97.74
PF08490396 DUF1744: Domain of unknown function (DUF1744); Int 97.68
cd06136177 TREX1_2 DEDDh 3'-5' exonuclease domain of three pr 97.62
PRK06310250 DNA polymerase III subunit epsilon; Validated 97.58
PRK06807313 DNA polymerase III subunit epsilon; Validated 97.56
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 97.48
PRK07740244 hypothetical protein; Provisional 97.47
PRK08517257 DNA polymerase III subunit epsilon; Provisional 97.44
smart00479169 EXOIII exonuclease domain in DNA-polymerase alpha 97.4
PRK07883557 hypothetical protein; Validated 97.37
PRK07942232 DNA polymerase III subunit epsilon; Provisional 97.36
PRK06063313 DNA polymerase III subunit epsilon; Provisional 97.34
PF03175459 DNA_pol_B_2: DNA polymerase type B, organellar and 97.33
PRK05711240 DNA polymerase III subunit epsilon; Provisional 97.22
PRK09146239 DNA polymerase III subunit epsilon; Validated 97.2
TIGR01406225 dnaQ_proteo DNA polymerase III, epsilon subunit, P 97.2
PRK05601377 DNA polymerase III subunit epsilon; Validated 97.19
cd06138183 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o 97.15
cd06131167 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl 97.15
cd06130156 DNA_pol_III_epsilon_like an uncharacterized bacter 97.15
cd06127159 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh 97.14
PRK06195309 DNA polymerase III subunit epsilon; Validated 97.11
PRK09145202 DNA polymerase III subunit epsilon; Validated 96.95
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 96.94
PRK08074 928 bifunctional ATP-dependent DNA helicase/DNA polyme 96.92
cd0612596 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas 96.79
TIGR00573217 dnaq exonuclease, DNA polymerase III, epsilon subu 96.71
PRK05168211 ribonuclease T; Provisional 96.59
TIGR01298200 RNaseT ribonuclease T. in gamma-subdivision Proteo 96.58
cd06134189 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. 96.51
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 96.4
KOG1798|consensus2173 96.27
PF01612176 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 96.23
PRK07748207 sporulation inhibitor KapD; Provisional 96.15
PRK11779476 sbcB exonuclease I; Provisional 96.11
PRK06722281 exonuclease; Provisional 96.02
PRK07247195 DNA polymerase III subunit epsilon; Validated 96.01
cd06133176 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o 95.98
cd06144152 REX4_like DEDDh 3'-5' exonuclease domain of RNA ex 95.7
cd06137161 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the 95.25
COG0847243 DnaQ DNA polymerase III, epsilon subunit and relat 95.19
COG2176 1444 PolC DNA polymerase III, alpha subunit (gram-posit 95.17
PRK05359181 oligoribonuclease; Provisional 94.99
cd06149157 ISG20 DEDDh 3'-5' exonuclease domain of Interferon 94.7
PRK09182294 DNA polymerase III subunit epsilon; Validated 94.6
cd06145150 REX1_like DEDDh 3'-5' exonuclease domain of RNA ex 94.57
cd06146193 mut-7_like_exo DEDDy 3'-5' exonuclease domain of C 94.43
cd06135173 Orn DEDDh 3'-5' exonuclease domain of oligoribonuc 94.41
PRK00448 1437 polC DNA polymerase III PolC; Validated 94.1
cd06141170 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and 91.94
cd06139193 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease 89.6
cd06129161 RNaseD_like DEDDy 3'-5' exonuclease domain of RNas 87.73
PTZ00315582 2'-phosphotransferase; Provisional 87.58
PRK05755880 DNA polymerase I; Provisional 86.96
PRK07983219 exodeoxyribonuclease X; Provisional 86.31
PHA03144746 helicase-primase primase subunit; Provisional 81.51
>KOG0968|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.9e-192  Score=1699.24  Aligned_cols=1127  Identities=38%  Similarity=0.597  Sum_probs=952.9

Q ss_pred             ccceeeecccC-CCCcceeeeccccccchhhHHHHHhhccCCCcC--------------CcceeEEeeccCCCCCHHHHH
Q psy5921          47 SESYLFTQNKS-YDSPTIVAKQTLLPLSGELEKQIISAKSSSTEG--------------SSVVTSYIKLKCKPISRALVV  111 (1200)
Q Consensus        47 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~pps~~ei~  111 (1200)
                      +|-+++..-+. -.++.-|++-+..-.++|++.--..+.-+.+.+              +--++-+.+|++++|.++|+|
T Consensus       305 se~~~~~~~~~~~Et~~~~s~~q~~~~~~E~~~f~~~~~~~~s~~~s~~~e~~Vs~~S~~~~~~~~~~~~~~~~~~~~~l  384 (1488)
T KOG0968|consen  305 SEKLLLNEIKEKHETNRRVSRFQGVLPSNEFCLFYSGARTNESDIDSQNREEHVSQISMSQKGNWSNPPLTAIQMKKETL  384 (1488)
T ss_pred             HHHHHHhhhccCCCcccccccccccccchHHHHHHhcCCCCcccccCcchhhccccccccccccccCCCccccchhhhhh
Confidence            46666654332 223444554444435677765544443333322              223445569999999999999


Q ss_pred             HHHhhcCCccccccCCCCCCCCCCC--cceecceeEEecCCccCccccccccc---cchHHHHHHHhhhc----cCCCCC
Q psy5921         112 EELINTDVTNILSQEPFYSNFKDIT--RTEITNKFVHLEAAPVALLEEHRCLF---SGLSEWRQRVCLEV----TGDATR  182 (1200)
Q Consensus       112 ~~~~~~~i~~~~~q~pf~Sn~~Dv~--~~Evg~~~l~v~~~~~~dl~ef~~~~---~gl~~wr~~~~~~~----~g~~~~  182 (1200)
                      .++..+..+..+.+++++||+++++  ++|+++...+++++..|+.+||.+.+   .+|+.||.++..++    +|..+.
T Consensus       385 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~nS~a~~~~~~s~~~~l~s~~k~~~~~~~~~s~~~~l~  464 (1488)
T KOG0968|consen  385 PNIESILVSSATQLESSNSGTLFLSREEVEICDDLGIVLKSVFNSYAERTSTISPLSPLRSAKKMAPKFRQERSPSLQLD  464 (1488)
T ss_pred             hhhhhccccccccccccCCCccccccccccccchhcccccccccccccccccccccccccchhhhcchhhcCCCCCcccc
Confidence            9999999999999999999999999  99999999999999999999999988   89999999988887    455552


Q ss_pred             --Chhhhhhh---ccccC-CCceEEecCCCCCChHHHHHHHHHHHHhhhhcCCCCCcchhhHHhhhhccccccCCccccc
Q psy5921         183 --NVNDIMES---FQHIF-PKSNFIKPIAKPPTSKSVTRWLERKEAFKRNAGTRSSVSSRVEQKILENEQCSQKGIVDVK  256 (1200)
Q Consensus       183 --~~~~~~~~---~~~~~-~~~~~i~P~~~pPs~~~v~~wl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (1200)
                        .+..+++.   -++.+ +++.+|+++.+.|..++++-|.+|.+++....+..  -.+.+...        +.+.+ .+
T Consensus       465 ~~~~~~~a~~~~~~~~v~a~~ts~~~~~~~~~~~e~~k~~~q~~~~~~~~~~~~--d~s~~~~~--------~~~p~-~d  533 (1488)
T KOG0968|consen  465 DGMVTRIAESQQTRSSVGASKTSIIEQPGEDPMEEDLKYREQAPEEGIPERQLE--DDSNEALS--------DGHPK-ND  533 (1488)
T ss_pred             CCcceehhhhhcCccccCCCCCccCCCCCcchhHHHhHHhhcCccccccccccc--ccchhhHh--------hcCCc-cc
Confidence              23333332   22222 58999999999999999999999999999876421  01111100        01111 11


Q ss_pred             cccccchhhcccCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCCCCCCccchhhhhcCCCCCCCCcC--CCChhhHH
Q psy5921         257 CFEESSALERSMKPDDRPSPTRKNKSTRSSFDSDMFPSSSSRESNQSPPNKDSIHEAEITHPDCSKSSQI--DFNPDLFK  334 (1200)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~n~~l~e  334 (1200)
                      ..+-.|+     .++++..-+ ..+...-.-..++.+.|..+.....+-...+  |....|.+.+.++..  ..+++.+.
T Consensus       534 ~klQ~ps-----D~~~~~~~~-~~s~~P~~~~~~~~~~S~~e~~s~~nv~~tg--E~l~~~s~pd~~~s~k~~~t~s~~d  605 (1488)
T KOG0968|consen  534 YKLQPPS-----DDEDSNTMS-LKSQKPVERAEADDVDSEVEDDSELNVKGTG--EVLEIHSDPDDQSSEKWALTPSAYD  605 (1488)
T ss_pred             cccCCCC-----Cccccchhh-hhccCchhhhhhccCCccccchhhcCccccc--eeeEeecCcccchhhhhccChHHHH
Confidence            1110110     111110000 0000000111233333333333333333333  445557554555544  66666777


Q ss_pred             HHHHHhhc-CCCcccccccc---cccCCcCCcceEeecccCcccccccccCCcceEEEEEEEeccCCCCCCCCCCCcEEE
Q psy5921         335 SFIRKQLE-TPKRRICDSYA---IDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKA  410 (1200)
Q Consensus       335 ~f~~~~~~-~g~cwl~i~~~---i~~~~~~s~~~fev~~~~~~~~~~~~~~p~LtvlSlDIeT~t~~~l~Pdp~~DeIia  410 (1200)
                      ++.. |++ .-----++++.   +.+++..+.+.|+.++.+.+..++.+..+.||++|+++|+.+|+++.|||..|+|.+
T Consensus       606 ~~~~-~~~~~~~~~~~~~~e~s~i~~p~~~s~~~~~~~v~~~q~~~~~~~~~~Lt~lsiElha~sr~dl~PDP~~D~V~~  684 (1488)
T KOG0968|consen  606 QNFK-SMNEQLFDAAKIENELSQIRGPTAKSVYTFETSVAGAQKSKPVEQTQLLTILSIELHATSRGDLEPDPVFDSVAS  684 (1488)
T ss_pred             hhHH-HHhhhhhcccchhhhhhhccCCccccccccchhhhcccccccccccceeeeeeeeccccccCCCCCCcccccchh
Confidence            7776 766 21112233333   999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCC-CC--Cc-eEEEEEecCC--CCC---CcC-CCCCeEEEEcCCHHHHHHHHHHHHhhhCCCEEEecCcccc
Q psy5921         411 IFYYLYTCPP-EE--DR-KVGIILIGQE--SEL---PEV-RTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETL  480 (1200)
Q Consensus       411 Is~~v~~d~~-~d--~~-~~gv~~v~~~--~~~---p~~-~~~~~~V~~~~nEkeLL~~F~~~I~~~DPDIIvGyNi~~F  480 (1200)
                      |+|++.++.+ .|  .+ ..|+++++..  +..   +.+ ...+++|.++.+|++|++++++++.++||||++||+++++
T Consensus       685 l~~~vq~dtp~pd~~si~~~gv~Vv~~~~~ds~~~t~~~~~~~~~~V~~~~sE~elf~ev~~~i~q~DPDIl~GyEi~~~  764 (1488)
T KOG0968|consen  685 LFLCVQEDTPMPDADSIVSVGVIVVDKVCPDSHVQTTTLGGIYGCRVVVMESELELFEEVAKLIVQYDPDILLGYEIHNL  764 (1488)
T ss_pred             hhhhhccCCCCCcccceeeeeEEEEeccCccccccccccCCcCCceEEEehhHHHHHHHHHHHHHhcCcceeeeeeeccc
Confidence            9999998855 33  23 6788888743  211   221 2347899999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHhCCCCcccccccccccccccCcc-ccc----cceeeecceEEeehHHHHHhhhcCCCCCHHHHHHHHcC
Q psy5921         481 SWGYLLERGYVLGLNLNQELSRITEVEKRNSSRD-EVK----NTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH  555 (1200)
Q Consensus       481 DlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~-~~~----~~~~~i~GRlvlDl~r~~r~el~L~SYsLe~Va~~vLg  555 (1200)
                      +||||++|++.||+++...++|++.....+.+.. ..|    .+.+.|.||+++++||++|.+++|++|+|++|++++|+
T Consensus       765 SWGyl~eR~~~l~~di~~~lsRv~~~~~~n~~d~~~ewg~tt~S~i~i~GR~~lNiWRilR~eV~L~nYtlEsv~~nVL~  844 (1488)
T KOG0968|consen  765 SWGYLIERAKLLGIDISRDLSRVKCYEKTNESDDEREWGYTTISGINIVGRHVLNIWRILRSEVALTNYTLESVVFNVLR  844 (1488)
T ss_pred             chHHHHHHHHHhcchHHHHHhcCCChhhhhhhhhhhhccceeeccccccchhhhhHHHHHhhhhhhhhccHHHHHHHHHH
Confidence            9999999999999999988999986554444332 122    56789999999999999999999999999999999999


Q ss_pred             CCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhcccchhhccCcchhhhhhhhhhc
Q psy5921         556 ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRL  635 (1200)
Q Consensus       556 ~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~Gi~~~~vl~rGsq~rvEslLlr~  635 (1200)
                      ++.|.+++..+++||+++....|+.++.|++.++.++++|+.++++|.++.||||++||+|.+|++||||+||||||||.
T Consensus       845 kk~P~~~~~~Lt~~~~s~~~~~r~~~l~y~l~Ra~~NlelLsq~d~i~k~~E~ARv~GIdF~sV~tRGSQ~rVESmllRi  924 (1488)
T KOG0968|consen  845 KKIPMFDFAVLTRWWKSKRSAERNDVLNYLLSRARLNLELLSQLDWILKNSEMARVIGIDFHSVLTRGSQFRVESMLLRI  924 (1488)
T ss_pred             hhcCCCcHHHHHHHHhcccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHHHHhhcceeeEEeeccchhhHHHHHHHH
Confidence            99999999999999999987889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCChhhhcccCCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCcc
Q psy5921         636 SRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGC  715 (1200)
Q Consensus       636 a~~~~~I~p~ps~~~~~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~  715 (1200)
                      ||++|||+|+|+.+|++.|++++|.||||||++.||++||+||||||||||||||||+||+||+|++.+++..+++++|+
T Consensus       925 Ak~~Nyi~~SPs~kQv~~q~A~EcvPLVMEPeS~fY~~PViVLDFQSLYPSivIAYNyCySTcLG~v~~l~~~~e~~LG~ 1004 (1488)
T KOG0968|consen  925 AKPMNYIAPSPSHKQVAMQGAPECVPLVMEPESAFYFDPVIVLDFQSLYPSIVIAYNYCYSTCLGKVGNLNQMNEIKLGV 1004 (1488)
T ss_pred             hcccccccCCccHHHHhhcCCccccceeecchhhhccCceEEEEchhhcchHHHhHHHHHHHhhhHHHhhccccceeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888889999


Q ss_pred             cccccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhccccccc
Q psy5921         716 IDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANV  795 (1200)
Q Consensus       716 ~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS  795 (1200)
                      ..+..+++.+.+.+++|+++|||++|||+++|+|+||+||+++|++|.|||+.||+.+++..++++||+||+||||+||+
T Consensus      1005 s~~s~~~dil~~~~ndV~isPNgv~yVK~sVRkgvLpkmLeEIL~tRiMVKkaMK~~~~~~~L~RiLnaRQLALKLiANV 1084 (1488)
T KOG0968|consen 1005 SKYSLPPDILVLAKNDVTISPNGVMYVKPSVRKGVLPKMLEEILATRIMVKKAMKRTKDNKKLKRILNARQLALKLIANV 1084 (1488)
T ss_pred             eeccCCHHHHHHHhcceeeCCCceEEechhhhhhhHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHhhhHHHHHHHHhhc
Confidence            99999999999888999999999999999999999999999999999999999999988889999999999999999999


Q ss_pred             ccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCCCHHHHHHHHHHHHHHHHc
Q psy5921         796 TYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTN  875 (1200)
Q Consensus       796 ~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~~~~ea~~ig~ei~~~Vn~  875 (1200)
                      +||||+|+|||||||.|+|++|+++|||+|++||++|+....||++||||||||+||.++|.+.+|||+||++|++.|++
T Consensus      1085 TYGYTsA~FSGRMPCaElADsIV~~GRETLEraIe~Vn~~d~w~AkVVYGDTDSmFVlL~GaT~eeAF~IGq~iAe~VT~ 1164 (1488)
T KOG0968|consen 1085 TYGYTSANFSGRMPCAELADSIVQKGRETLERAIEMVNRGDYWGAKVVYGDTDSMFVLLPGATVEEAFEIGQEIAEAVTN 1164 (1488)
T ss_pred             cccccccccCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcCCeEEEEcCCCceEEEecCccHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeeeeeceechhhccccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCCHHHHHHHH
Q psy5921         876 NNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYV  955 (1200)
Q Consensus       876 ~~p~pi~LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~~~v~~yl  955 (1200)
                      .||+|+.|+|||||+||+|++||||+|++||+++|..|.||+||||+||||+||++.++++++|++||+++|++.|+.|+
T Consensus      1165 ~NP~PV~LKfEKVY~PCvL~tKKRYVG~~YEs~~Qk~PiFDAKGIETVRRDtcPavakilEksL~LlFetkdlS~IK~y~ 1244 (1488)
T KOG0968|consen 1165 SNPKPVVLKFEKVYHPCVLLTKKRYVGFMYESPNQKEPIFDAKGIETVRRDTCPAVAKILEKSLRLLFETKDLSKIKKYL 1244 (1488)
T ss_pred             cCCCCeEEEeeeecccceeeeccceeeeeeccCcccCCccccccceeeeccCcHHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCChhhhhHhhcccCCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCeeeEEEEeCCCCCCcccccCChh
Q psy5921         956 EKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035 (1200)
Q Consensus       956 ~~~~~kl~~g~v~~~dlii~K~lr~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI~~g~~~~~~~~r~~~P~ 1035 (1200)
                      ++++.++++|+++++||+|+|++|....|+.+..+|++.+|+|++..||+.+|++||||||||++|.+|.++++|+++|+
T Consensus      1245 q~~~~ki~~Gkvs~qDF~FaKEvRl~~~~~~~~~pP~avva~r~i~~DpR~EPqygERVPYvII~G~pG~~L~~~vvsP~ 1324 (1488)
T KOG0968|consen 1245 QNVCNKIQEGKVSFQDFCFAKEVRLEKYYSASAAPPGAVVARRRITKDPRHEPQYGERVPYVIIDGVPGSTLYSRVVSPE 1324 (1488)
T ss_pred             HHHHHHHhhCCcchhhheeeeeecceeccccccCCchHHHHHHHhccCCccCccccccCCeEEEeCCCCCcHHHHhcCHH
Confidence            99999999999999999999999964456666677889999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCChHHHhhccchhHHHHHHhhcCCChhhhhhcCCcceeecCccccccccccccccccccccccccCCcccc
Q psy5921        1036 ELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTISQYFASVNCVCCNQMTQ 1115 (1200)
Q Consensus      1036 e~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~G~d~~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~C~~C~~~~~ 1115 (1200)
                      ||++++.+++|..|||+|||+|||.|+|+++|+|+..||++||+..+.+. .........+||+.|+.+.+|+.|-.. .
T Consensus      1325 efL~~~~~rLn~~YYINk~iiPpL~Rvf~LiG~~v~~W~~Empk~krtS~-~~te~e~~~~tid~f~ts~hC~~c~~~-~ 1402 (1488)
T KOG0968|consen 1325 EFLRNPTYRLNTFYYINKQIIPPLDRVFNLIGADVDSWYHEMPKSKRTSL-KLTETEKGGITIDTFVTSKHCSSCCSR-I 1402 (1488)
T ss_pred             HHhcCCceeccceeeehhhccchHHHHhhhcccchhhHHHhccccccccc-cccccccCCceeeEEEeeccccchhcc-c
Confidence            99999899999999999999999999999999999999999998544422 122334445689999999999997332 4


Q ss_pred             cCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHcccCcCCC-C---CccccCCCCCceeEeecchhhhh-hHHHHH
Q psy5921        1116 NNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRS-T---SNDCISLDCPVLYRKTQITRDLD-QLSYVL 1190 (1200)
Q Consensus      1116 ~~~~~C~~C~~~~~~~~~~~~~~~~~~e~~~~~~~~~C~~C~~~~-~---~~~C~~~dC~v~y~~~~~~~~~~-~~~~~~ 1190 (1200)
                      +..++|.+|.++|+.+++.+..+.+.+|+++.++.++|++|++.. +   .+.|.|.+|||||.|.++++.+. |..++.
T Consensus      1403 ~~~~lC~~Clqnp~~~a~~~v~~~~~l~re~~~L~~iCr~Cs~~~~~~~~~v~C~S~~C~V~y~r~k~er~l~~qae~~~ 1482 (1488)
T KOG0968|consen 1403 GSTQLCSDCLQNPSATALALVQKGRELERERSQLITICRSCSGSSQRDGQVVKCNSLTCPVFYTRSKVERYLRAQAETAH 1482 (1488)
T ss_pred             ccchhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccccccCchhhhHHHHHHHHHhhHHHHH
Confidence            677899999999999999999999999999999999999999653 3   57999999999999999999888 778888


Q ss_pred             HHHHh
Q psy5921        1191 SLCDS 1195 (1200)
Q Consensus      1191 ~l~~~ 1195 (1200)
                      ..|++
T Consensus      1483 k~l~~ 1487 (1488)
T KOG0968|consen 1483 KMLGS 1487 (1488)
T ss_pred             HHhcc
Confidence            77653

>PTZ00166 DNA polymerase delta catalytic subunit; Provisional Back     alignment and domain information
>KOG0970|consensus Back     alignment and domain information
>KOG0969|consensus Back     alignment and domain information
>TIGR00592 pol2 DNA polymerase (pol2) Back     alignment and domain information
>PHA03036 DNA polymerase; Provisional Back     alignment and domain information
>PRK05762 DNA polymerase II; Reviewed Back     alignment and domain information
>PHA02528 43 DNA polymerase; Provisional Back     alignment and domain information
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05761 DNA polymerase I; Reviewed Back     alignment and domain information
>cd05534 POLBc_zeta DNA polymerase type-B zeta subfamily catalytic domain Back     alignment and domain information
>cd05533 POLBc_delta DNA polymerase type-B delta subfamily catalytic domain Back     alignment and domain information
>cd05532 POLBc_alpha DNA polymerase type-B alpha subfamily catalytic domain Back     alignment and domain information
>cd05536 POLBc_B3 DNA polymerase type-B B3 subfamily catalytic domain Back     alignment and domain information
>PF00136 DNA_pol_B: DNA polymerase family B Several related DNA polymerases were too dissimilar to be included Back     alignment and domain information
>cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain Back     alignment and domain information
>cd05530 POLBc_B1 DNA polymerase type-B B1 subfamily catalytic domain Back     alignment and domain information
>cd00145 POLBc DNA polymerase type-B family catalytic domain Back     alignment and domain information
>smart00486 POLBc DNA polymerase type-B family Back     alignment and domain information
>cd05538 POLBc_Pol_II_B DNA polymerase type-II B subfamily catalytic domain Back     alignment and domain information
>cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain Back     alignment and domain information
>PHA03334 putative DNA polymerase catalytic subunit; Provisional Back     alignment and domain information
>PHA02524 43A DNA polymerase subunit A; Provisional Back     alignment and domain information
>KOG1798|consensus Back     alignment and domain information
>cd05535 POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain Back     alignment and domain information
>cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase Back     alignment and domain information
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase Back     alignment and domain information
>PHA02523 43B DNA polymerase subunit B; Provisional Back     alignment and domain information
>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase Back     alignment and domain information
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>TIGR00592 pol2 DNA polymerase (pol2) Back     alignment and domain information
>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included Back     alignment and domain information
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases Back     alignment and domain information
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase Back     alignment and domain information
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>PHA02563 DNA polymerase; Provisional Back     alignment and domain information
>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins Back     alignment and domain information
>PF14260 zf-C4pol: C4-type zinc-finger of DNA polymerase delta Back     alignment and domain information
>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A Back     alignment and domain information
>COG3359 Predicted exonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PHA02735 putative DNA polymerase type B; Provisional Back     alignment and domain information
>PRK06309 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR03491 RecB family nuclease, putative, TM0106 family Back     alignment and domain information
>PF08490 DUF1744: Domain of unknown function (DUF1744); InterPro: IPR013697 This domain is found on the catalytic subunit of DNA polymerase epsilon Back     alignment and domain information
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins Back     alignment and domain information
>PRK06310 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06807 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>PRK07740 hypothetical protein; Provisional Back     alignment and domain information
>PRK08517 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>PRK07883 hypothetical protein; Validated Back     alignment and domain information
>PRK07942 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PF03175 DNA_pol_B_2: DNA polymerase type B, organellar and viral; InterPro: IPR004868 This entry is found in DNA polymerase type B proteins Back     alignment and domain information
>PRK05711 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK09146 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial Back     alignment and domain information
>PRK05601 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins Back     alignment and domain information
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins Back     alignment and domain information
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III Back     alignment and domain information
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK09145 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily Back     alignment and domain information
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information
>PRK05168 ribonuclease T; Provisional Back     alignment and domain information
>TIGR01298 RNaseT ribonuclease T Back     alignment and domain information
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG1798|consensus Back     alignment and domain information
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides Back     alignment and domain information
>PRK07748 sporulation inhibitor KapD; Provisional Back     alignment and domain information
>PRK11779 sbcB exonuclease I; Provisional Back     alignment and domain information
>PRK06722 exonuclease; Provisional Back     alignment and domain information
>PRK07247 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins Back     alignment and domain information
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins Back     alignment and domain information
>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05359 oligoribonuclease; Provisional Back     alignment and domain information
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>PRK09182 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins Back     alignment and domain information
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information
>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins Back     alignment and domain information
>PRK00448 polC DNA polymerase III PolC; Validated Back     alignment and domain information
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases Back     alignment and domain information
>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>PTZ00315 2'-phosphotransferase; Provisional Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>PRK07983 exodeoxyribonuclease X; Provisional Back     alignment and domain information
>PHA03144 helicase-primase primase subunit; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1200
3iay_A919 Ternary Complex Of Dna Polymerase Delta Length = 91 2e-60
2vwk_A773 Uracil Recognition In Archaeal Dna Polymerases Capt 3e-35
2xhb_A773 Crystal Structure Of Dna Polymerase From Thermococc 3e-35
2vwj_A773 Uracil Recognition In Archaeal Dna Polymerases Capt 4e-35
1tgo_A773 Thermostable B Type Dna Polymerase From Thermococcu 4e-35
1qht_A775 Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon 2e-34
1wns_A774 Crystal Structure Of Family B Dna Polymerase From H 3e-33
1wn7_A774 Crystal Structure Of Archaeal Family B Dna Polymera 3e-33
2gv9_A1193 Crystal Structure Of The Herpes Simplex Virus Type 4e-32
2jgu_A775 Crystal Structure Of Dna-directed Dna Polymerase Le 4e-31
4ahc_A775 Crystal Structure Of An Evolved Replicating Dna Pol 3e-30
1qqc_A773 Crystal Structure Of An Archaebacterial Dna Polymer 6e-30
3a2f_A775 Crystal Structure Of Pyrococcus Furiosus Dna Polyme 3e-29
1d5a_A733 Crystal Structure Of An Archaebacterial Dna Polymer 4e-28
4flt_A793 Pyrococcus Abyssi B Family Dna Polymerase Bound To 8e-27
4fm2_A793 Pyrococcus Abyssi B Family Dna Polymerase (Triple M 4e-26
4fvm_A910 Crystal Structure Of Yeast Dna Polymerase Alpha Len 1e-21
4fyd_A910 Crystal Structure Of Yeast Dna Polymerase Alpha Bou 4e-21
4b08_A910 Crystal Structure Of Yeast Dna Polymerase Alpha, Se 7e-19
3k5l_A786 Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Datp 5e-10
1q8i_A783 Crystal Structure Of Escherichia Coli Dna Polymeras 7e-10
1s5j_A847 Insight In Dna Replication: The Crystal Structure O 1e-07
>pdb|3IAY|A Chain A, Ternary Complex Of Dna Polymerase Delta Length = 919 Back     alignment and structure 
Iteration: 1

 Score =  231 bits (588), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 198/710 (27%), Positives = 326/710 (45%), Gaps = 92/710 (12%)
Query: 384  LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRT- 442
            L +++ +I    R  + P+P YD V  I                ++ I    + P +R  
Sbjct: 249  LRIMSFDIECAGRIGVFPEPEYDPVIQI--------------ANVVSIAGAKK-PFIRNV 293
Query: 443  ------KPIQMHFV---SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLG 493
                   PI    +   + E+E+ S +   + + DPD++IGY        YLL R   L 
Sbjct: 294  FTLNTCSPITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALK 353
Query: 494  LN----------LNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQS 543
            +N          + QE+       K   +R E KN  +   GR+ ++L + ++ E  L+S
Sbjct: 354  VNDFPYFGRLKTVKQEIKESVFSSKAYGTR-ETKNVNID--GRLQLDLLQFIQREYKLRS 410
Query: 544  YTFENIMYHVLHERIPLHSWKLLTCWW----EHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599
            YT   +  H L E+     + +++       E R  L  +   + YL      +RL+E+L
Sbjct: 411  YTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLP-----LRLMEKL 465
Query: 600  DFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPES 659
              +   +EMAR+ G+ F  +L+RG Q +V S + R  +      V P+++ +A     E 
Sbjct: 466  MALVNYTEMARVTGVPFSYLLARGQQIKVVSQLFR--KCLEIDTVIPNMQSQASDDQYEG 523
Query: 660  LPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR--VEHLGVSDSFPFGCID 717
              +I EP    Y  PI  LDF SLYPS+++A+N C++T   +  VE L +          
Sbjct: 524  ATVI-EPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNL---------- 572
Query: 718  LNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAA 777
                     K+ +   I+P+G  FV    R GILP +L E++  R   K+ +++ K +  
Sbjct: 573  ---------KIDEDYVITPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEK-DPF 622
Query: 778  LQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVN---- 833
             + VL+ RQL LK+ AN  YG+T A   G++PC+ +  SV + GR  + K    V     
Sbjct: 623  KRDVLNGRQLALKISANSVYGFTGATV-GKLPCLAISSSVTAYGRTMILKTKTAVQEKYC 681
Query: 834  --NTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQP 891
              N  K    VVYGDTDS+ V       +EA ++G E A            L+FEK Y P
Sbjct: 682  IKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAMDLGTEAAKYVSTLFKHPINLEFEKAYFP 741
Query: 892  CILQTKKRYVGYMYETADQ-DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSV 950
             +L  KKRY G  +   D+ DK   + KG+ +VRRD C  VS ++ K L  +   +++  
Sbjct: 742  YLLINKKRYAGLFWTNPDKFDK--LDQKGLASVRRDSCSLVSIVMNKVLKKILIERNVDG 799
Query: 951  VKEYVEKQFSKIISGRISVQDMTFAKEYR-GQAGYKPGACVPALSLARQWVLTDPRAEPR 1009
               +V +  + I+  R+ +  +  +K         +P A +      R+ V       P 
Sbjct: 800  ALAFVRETINDILHNRVDISKLIISKTLAPNYTNPQPHAVLAERMKRREGV------GPN 853
Query: 1010 VSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPL 1059
            V +RV YVI+ G     L    + P  +L++ +++++S YY+T  +  P+
Sbjct: 854  VGDRVDYVIIGGND--KLYNRAEDPLFVLEN-NIQVDSRYYLTNQLQNPI 900
>pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By X-Ray Crystallography. V93q Polymerase Variant Length = 773 Back     alignment and structure
>pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus Gorgonarius In Complex With Hypoxanthine-Containing Dna Length = 773 Back     alignment and structure
>pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By X-Ray Crystallography Length = 773 Back     alignment and structure
>pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus Gorgonarius Length = 773 Back     alignment and structure
>pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon Length = 775 Back     alignment and structure
>pdb|1WNS|A Chain A, Crystal Structure Of Family B Dna Polymerase From Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1 Length = 774 Back     alignment and structure
>pdb|1WN7|A Chain A, Crystal Structure Of Archaeal Family B Dna Polymerase Mutant Length = 774 Back     alignment and structure
>pdb|2GV9|A Chain A, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna Polymerase Length = 1193 Back     alignment and structure
>pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase Length = 775 Back     alignment and structure
>pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase Length = 775 Back     alignment and structure
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase D.Tok Length = 773 Back     alignment and structure
>pdb|3A2F|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna PolymerasePCNA Monomer Mutant Complex Length = 775 Back     alignment and structure
>pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase D.Tok. Deposition Of Second Native Structure At 2.4 Angstrom Length = 733 Back     alignment and structure
>pdb|4FLT|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna, In Edition Mode Length = 793 Back     alignment and structure
>pdb|4FM2|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase (Triple Mutant) Bound To A Dsdna, In Edition Mode Length = 793 Back     alignment and structure
>pdb|4FVM|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Length = 910 Back     alignment and structure
>pdb|4FYD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To Dna/rna And Dgtp Length = 910 Back     alignment and structure
>pdb|4B08|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha, Selenomethionine Protein Length = 910 Back     alignment and structure
>pdb|3K5L|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Datp Lt(0, 3) Ternary Complex Length = 786 Back     alignment and structure
>pdb|1Q8I|A Chain A, Crystal Structure Of Escherichia Coli Dna Polymerase Ii Length = 783 Back     alignment and structure
>pdb|1S5J|A Chain A, Insight In Dna Replication: The Crystal Structure Of Dna Polymerase B1 From The Archaeon Sulfolobus Solfataricus Length = 847 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1200
3iay_A919 DNA polymerase delta catalytic subunit; protein-DN 0.0
1qht_A775 Protein (DNA polymerase); archaea, hyperthermostab 0.0
2gv9_A1193 DNA polymerase; polymerase alpha fold, transferase 1e-165
3k59_A786 POL II, DNA polymerase II; protein-DNA complex, DN 1e-132
1s5j_A847 DNA polymerase I; replication, disulfide bonds, tr 5e-87
3qex_A903 DNA polymerase, GP43; difluorotoluene nucleoside; 1e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
2py5_A575 DNA polymerase; protein-DNA complex, replication, 1e-08
2pff_A1688 Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl 4e-04
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Length = 919 Back     alignment and structure
 Score =  633 bits (1634), Expect = 0.0
 Identities = 181/697 (25%), Positives = 316/697 (45%), Gaps = 50/697 (7%)

Query: 384  LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 443
            L +++ +I    R  + P+P YD V  I   +     ++     +  +   S +      
Sbjct: 249  LRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSPITGS--- 305

Query: 444  PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI 503
               +   + E+E+ S +   + + DPD++IGY        YLL R   L +N      R+
Sbjct: 306  --MIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRL 363

Query: 504  TEVEKRNSSRD-------EVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE 556
              V++               +   + + GR+ ++L + ++ E  L+SYT   +  H L E
Sbjct: 364  KTVKQEIKESVFSSKAYGTRETKNVNIDGRLQLDLLQFIQREYKLRSYTLNAVSAHFLGE 423

Query: 557  RIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQF 616
            +     + +++      +   +     + L      +RL+E+L  +   +EMAR+ G+ F
Sbjct: 424  QKEDVHYSIISDLQNGDSET-RRRLAVYCLKDAYLPLRLMEKLMALVNYTEMARVTGVPF 482

Query: 617  YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 676
              +L+RG Q +V S + R     + V   P+++ +A     E    ++EP    Y  PI 
Sbjct: 483  SYLLARGQQIKVVSQLFRKCLEIDTVI--PNMQSQASDDQYEG-ATVIEPIRGYYDVPIA 539

Query: 677  VLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISP 736
             LDF SLYPS+++A+N C++T   +                     R   K+ +   I+P
Sbjct: 540  TLDFNSLYPSIMMAHNLCYTTLCNKAT-----------------VERLNLKIDEDYVITP 582

Query: 737  SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVT 796
            +G  FV    R GILP +L E++  R   K+ +++ K +   + VL+ RQL LK+ AN  
Sbjct: 583  NGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEK-DPFKRDVLNGRQLALKISANSV 641

Query: 797  YGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVN------NTSKWQCRVVYGDTDSM 850
            YG+T A   G++PC+ +  SV + GR  + K    V       N  K    VVYGDTDS+
Sbjct: 642  YGFTGATV-GKLPCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSV 700

Query: 851  FVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQ 910
             V       +EA ++G E A  V+     P+ L+FEK Y P +L  KKRY G  +   D+
Sbjct: 701  MVKFGTTDLKEAMDLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPDK 760

Query: 911  DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQ 970
               + + KG+ +VRRD C  VS ++ K L  +   +++     +V +  + I+  R+ + 
Sbjct: 761  FDKL-DQKGLASVRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETINDILHNRVDIS 819

Query: 971  DMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKL 1030
             +  +K             V A  + R          P V +RV YVI+ G     L   
Sbjct: 820  KLIISKTLAPNYTNPQPHAVLAERMKR-----REGVGPNVGDRVDYVIIGG--NDKLYNR 872

Query: 1031 VKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLG 1067
             + P  +L++ +++++S YY+T  +  P+      + 
Sbjct: 873  AEDPLFVLEN-NIQVDSRYYLTNQLQNPIISIVAPII 908
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Length = 775 Back     alignment and structure
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Length = 1193 Back     alignment and structure
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Length = 786 Back     alignment and structure
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Length = 847 Back     alignment and structure
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 3spz_A* 3ne6_A* 3nhg_A* 3si6_A* 3scx_A* 3sjj_A* 3snn_A* 3ngi_A* 3lzi_A* 3lzj_A* 3ndk_A* ... Length = 903 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* Length = 575 Back     alignment and structure
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1200
3iay_A919 DNA polymerase delta catalytic subunit; protein-DN 100.0
2gv9_A1193 DNA polymerase; polymerase alpha fold, transferase 100.0
1qht_A775 Protein (DNA polymerase); archaea, hyperthermostab 100.0
3k59_A786 POL II, DNA polymerase II; protein-DNA complex, DN 100.0
3qex_A903 DNA polymerase, GP43; difluorotoluene nucleoside; 100.0
1s5j_A847 DNA polymerase I; replication, disulfide bonds, tr 100.0
1noy_A388 Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas 100.0
2py5_A575 DNA polymerase; protein-DNA complex, replication, 99.96
3flo_B206 DNA polymerase alpha catalytic subunit A; protein- 98.76
3abd_X52 REV3, HREV3, DNA polymerase zeta catalytic subunit 98.47
1y97_A238 Three prime repair exonuclease 2; TREX2, hydrolase 98.21
3mxm_B242 Three prime repair exonuclease 1; RNAse H-like fol 98.19
3u3y_B314 Three prime repair exonuclease 1; RNAse H fold, 3' 98.05
2p1j_A186 POLIII, DNA polymerase III POLC-type; structural g 97.98
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 97.56
1w0h_A204 3'-5' exonuclease ERI1; nuclease domain, hydrolase 97.55
3v9w_A235 Ribonuclease T; DEDD nucleases family, EXO-nucleas 97.5
2gui_A194 DNA polymerase III epsilon subunit; DNA polymerase 97.48
2f96_A224 Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas 97.33
1zbu_A349 ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; 97.18
2qxf_A482 Exodeoxyribonuclease I; alpha-beta domain, DNAQ su 96.55
2xri_A224 ERI1 exoribonuclease 3; hydrolase, metal binding; 96.51
3cg7_A308 CRN-4, cell death-related nuclease 4; hydrolase, a 94.96
2igi_A180 Oligoribonuclease; RNAse, exoribonuclease, exonucl 94.47
3tr8_A186 Oligoribonuclease; transcription, hydrolase; 2.50A 94.15
1x9m_A698 DNA polymerase; DNA ploymerase, N-2-acetylaminoflu 92.21
2kfn_A605 Klenow fragment of DNA polymerase I; complex (poly 91.97
2gbz_A194 Oligoribonuclease; ORN, deddh, structural genomics 90.54
1wlj_A189 Interferon stimulated gene 20KDA; exoribonuclease, 83.62
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 83.24
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=2.6e-135  Score=1290.36  Aligned_cols=703  Identities=26%  Similarity=0.424  Sum_probs=615.0

Q ss_pred             CCChhhHHHHHHHhhc-CCCcccccccc-c---ccCCcCCcceEeecccCccccccc-----ccCCcceEEEEEEEeccC
Q psy5921         327 DFNPDLFKSFIRKQLE-TPKRRICDSYA-I---DAMTPDTTGDYQMGLDNLNEVTSH-----VENYYLTVLAVEIHAISR  396 (1200)
Q Consensus       327 ~~n~~l~e~f~~~~~~-~g~cwl~i~~~-i---~~~~~~s~~~fev~~~~~~~~~~~-----~~~p~LtvlSlDIeT~t~  396 (1200)
                      + |-.....|+. .++ +|+||++++.+ +   ....+.+||++|+.+...+.+...     ...|||++|||||||.++
T Consensus       184 E-dI~~~~Rfli-D~~I~g~~W~~i~~~~~~~~~~~~~~S~c~~Ev~v~~~~l~~~~~~~~~~~~PplrilSfDIEt~~~  261 (919)
T 3iay_A          184 D-NIAYTLRLMV-DCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINYRNLIAHPAEGDWSHTAPLRIMSFDIECAGR  261 (919)
T ss_dssp             C-CCCHHHHHHH-HHTCCTTCEEEECTTSEEECCGGGCCBCCSEEEEEETTTCEEECSSGGGSCCCCCEEEEEEEEECCC
T ss_pred             c-CCChHhhhee-ecCCccceEEEEecCcceeccccCCccceeEEEEeeccccccccccccccCCCCceEEEEEEEECCC
Confidence            6 8888999999 888 99999999876 3   233568999999876544333221     246999999999999999


Q ss_pred             CCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHHhhhCCCEEEecC
Q psy5921         397 ALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYE  476 (1200)
Q Consensus       397 ~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I~~~DPDIIvGyN  476 (1200)
                      +++||+|++|+|++||++++.++...+..+.++.+.++...     .+..|..|++|++||.+|+++|+++|||||+|||
T Consensus       262 ~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~~~-----~~~~V~~~~sE~eLL~~F~~~i~~~DPDIIvGyN  336 (919)
T 3iay_A          262 IGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSPI-----TGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYN  336 (919)
T ss_dssp             TTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCCCB-----TTBEEEEESSHHHHHHHHHHHHHHHCCSEEEESS
T ss_pred             CCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCCCC-----CCCeEEECCCHHHHHHHHHHHHHHhCCCEEEecC
Confidence            88999999999999999887766544445667777765432     3578999999999999999999999999999999


Q ss_pred             cccccHHHHHHHHHHhCCCCcccccccccccc-c---ccCc---cccccceeeecceEEeehHHHHHhhhcCCCCCHHHH
Q psy5921         477 IETLSWGYLLERGYVLGLNLNQELSRITEVEK-R---NSSR---DEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENI  549 (1200)
Q Consensus       477 i~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~-~---~~s~---~~~~~~~~~i~GRlvlDl~r~~r~el~L~SYsLe~V  549 (1200)
                      +.+||||||.+||..+|++.|+.+||.+.... .   .++.   +.+....+.+.||++||+|+.+++++++.||+|++|
T Consensus       337 i~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~lDl~~~~k~~~~l~sysL~~V  416 (919)
T 3iay_A          337 TTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQLDLLQFIQREYKLRSYTLNAV  416 (919)
T ss_dssp             TTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEEEEHHHHHHHHCCCSCCCHHHH
T ss_pred             CccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEEEEhHHHHHhhcCCCCCCHHHH
Confidence            99999999999999999999989999864321 1   1111   112234578999999999999999999999999999


Q ss_pred             HHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhcccchhhccCcchhhhh
Q psy5921         550 MYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVE  629 (1200)
Q Consensus       550 a~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~Gi~~~~vl~rGsq~rvE  629 (1200)
                      |+++||+++++++++++.+||+.+. ..+.+++.||++||.++++|+.++++++++.|+|+++|++|+++++||+|++||
T Consensus       417 a~~~Lg~~K~dv~~~~I~~l~~~~~-~~~~~L~~Y~~~Da~l~~~L~~kl~~l~~~~elArl~Gi~~~~vl~rG~qi~ve  495 (919)
T 3iay_A          417 SAHFLGEQKEDVHYSIISDLQNGDS-ETRRRLAVYCLKDAYLPLRLMEKLMALVNYTEMARVTGVPFSYLLARGQQIKVV  495 (919)
T ss_dssp             HHHHHCCC------CCHHHHHTSCH-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHSCHHHHHH
T ss_pred             HHHhcccCCCCCCHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHcCCCHHHhhcccchHHHH
Confidence            9999999999999999999998642 468899999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccccccccccCCChhhhcccCCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCC
Q psy5921         630 SIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSD  709 (1200)
Q Consensus       630 slLlr~a~~~~~I~p~ps~~~~~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~  709 (1200)
                      ++|+|+|+++|||+|++...   .....+.||+||||++|||++||++|||+|||||||++|||||||+++... .    
T Consensus       496 s~Llr~a~~~~~ilP~~~~~---~~~~~y~Gg~V~eP~~G~y~~pV~~lDF~SLYPSIi~~~Nlc~~Tl~~~~~-~----  567 (919)
T 3iay_A          496 SQLFRKCLEIDTVIPNMQSQ---ASDDQYEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKAT-V----  567 (919)
T ss_dssp             HHHHHHHHHTTEECBCCCCC---CCSSCCCCCCBCCCCCEEECSCEEEEEETTHHHHHHHHTTCSGGGEECHHH-H----
T ss_pred             HHHHHHHhhCCeeCCCcccc---cccccCCCCEEecCCCCceeccEEEEEecccchHHHHhcCcCcccccccch-h----
Confidence            99999999999999876532   123567799999999999999999999999999999999999999986321 0    


Q ss_pred             CCCCcccccccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhc
Q psy5921         710 SFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGL  789 (1200)
Q Consensus       710 ~~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~AL  789 (1200)
                            ..+...+      .+++..+|+|..|+++++++||||++|++|+++|+++|+.||+. .|+.++++||+||+|+
T Consensus       568 ------~~~~~~~------~~~~~~~p~g~~f~~~~~~~gilp~~l~~ll~~R~~~K~~mk~~-~d~~~~~~ld~~Q~Al  634 (919)
T 3iay_A          568 ------ERLNLKI------DEDYVITPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDE-KDPFKRDVLNGRQLAL  634 (919)
T ss_dssp             ------HHTTCCB------TTTEEECTTSCEEECTTTCCCHHHHHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHH
T ss_pred             ------hhcCCCC------CcceeeCCCCcEEeccCCCCCchHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHhh
Confidence                  0000000      13677899999999999999999999999999999999999985 4799999999999999


Q ss_pred             ccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccc------CcCcceEEeccCCceeEecCCCCHHHHH
Q psy5921         790 KLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNT------SKWQCRVVYGDTDSMFVLAPGKTKQEAF  863 (1200)
Q Consensus       790 KllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~------~~~g~~VIYGDTDSvfV~~~~~~~~ea~  863 (1200)
                      |++|||+|||+|+++ |||||.++|++||+.||++|++|++++|+.      +++|++|||||||||||++++.+.++|+
T Consensus       635 Ki~~NS~YG~~G~~~-~r~~~~~iA~siT~~GR~~l~~t~~~ie~~~~~~~g~~~~~~ViYGDTDSvfv~~~~~~~~~~~  713 (919)
T 3iay_A          635 KISANSVYGFTGATV-GKLPCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAM  713 (919)
T ss_dssp             HHHHHHHHHHHTCSS-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGTCSSCCEEEECBSSEEEEECSCSCHHHHH
T ss_pred             ccccccccccccccc-CccCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCCeeEEEcCCCCHHHHH
Confidence            999999999999985 899999999999999999999999999973      2469999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCceeeeeeceechhhccccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHh
Q psy5921         864 EIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLF  943 (1200)
Q Consensus       864 ~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll  943 (1200)
                      ++|++++++||+.|+.|++||||+||+++||++||||||+.|++++ ..+++++||+|+||||||+++|++++++|+.||
T Consensus       714 ~~g~~~~~~v~~~~~~~i~le~E~vy~~~ll~~KKrYag~~~~~~~-~~~~~~~KGie~vRrD~~~~~k~~~~~~l~~ll  792 (919)
T 3iay_A          714 DLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPD-KFDKLDQKGLASVRRDSCSLVSIVMNKVLKKIL  792 (919)
T ss_dssp             HHHHHHHHHHHTTSCTTCCEEEEEEEEEEEEEETTEEEEEEESSSS-SCCEEEEESSGGGCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEeeeehhhhhhcccceEEEEeccCC-CCceEEEEeEEEEeCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987654 347999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCChhhhhHhhcccCCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCeeeEEEEeCCC
Q psy5921         944 ETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAP 1023 (1200)
Q Consensus       944 ~~~d~~~v~~yl~~~~~kl~~g~v~~~dlii~K~lr~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI~~g~~ 1023 (1200)
                      .++|++++++|+++++.+|++|++|+++|+|+|++++  +|+..  +|||++|+||++++ +..|++||||+|||+ | +
T Consensus       793 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvi~k~l~k--~Y~~~--~phv~~A~r~~~~~-~~~~~~G~rI~YVi~-g-~  865 (919)
T 3iay_A          793 IERNVDGALAFVRETINDILHNRVDISKLIISKTLAP--NYTNP--QPHAVLAERMKRRE-GVGPNVGDRVDYVII-G-G  865 (919)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCSCGGGGCEEEECCS--CCSSC--CHHHHHHHHHHHHH-SCCCCTTSEEEEEEB-C-S
T ss_pred             cCCCHHHHHHHHHHHHHHHHcCCCCHHHeEEeeeccc--CCCCC--ChHHHHHHHHHHhc-CCCCCCCCEEEEEEE-C-C
Confidence            9999999999999999999999999999999999976  89864  79999999999987 788999999999999 7 7


Q ss_pred             CCCcccccCChhhhhccCCCCCChHHHhhccchhHHHHHHhhc-CC
Q psy5921        1024 GLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLL-GT 1068 (1200)
Q Consensus      1024 ~~~~~~r~~~P~e~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~-G~ 1068 (1200)
                      +.++.+|+++|.+++++ +++||++|||+|||+|||+|||+++ |-
T Consensus       866 ~~~~~~ra~~p~~~~~~-~~~iD~~yYi~~qi~ppl~Ri~~~i~g~  910 (919)
T 3iay_A          866 NDKLYNRAEDPLFVLEN-NIQVDSRYYLTNQLQNPIISIVAPIIGD  910 (919)
T ss_dssp             SSCGGGCEECHHHHHHT-TCCBCHHHHHHHTTHHHHHHHHHHHHCH
T ss_pred             CCchhhhccCHHHHhcc-CCCCCHHHHHHhccHHHHHHHHHHhcCC
Confidence            78899999999998865 6899999999999999999999986 63
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Back     alignment and structure
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Back     alignment and structure
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Back     alignment and structure
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ... Back     alignment and structure
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Back     alignment and structure
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* Back     alignment and structure
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* Back     alignment and structure
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3abd_X REV3, HREV3, DNA polymerase zeta catalytic subunit; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_Z* Back     alignment and structure
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Back     alignment and structure
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Back     alignment and structure
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A Back     alignment and structure
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* Back     alignment and structure
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 Back     alignment and structure
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* Back     alignment and structure
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Back     alignment and structure
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Back     alignment and structure
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A Back     alignment and structure
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii} Back     alignment and structure
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* Back     alignment and structure
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Back     alignment and structure
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1200
d1tgoa2426 e.8.1.1 (A:348-773) Family B DNA polymerase {Archa 6e-55
d1q8ia2394 e.8.1.1 (A:390-783) Family B DNA polymerase {Esche 5e-43
d1s5ja2415 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfo 3e-41
d2py5a2388 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacterio 4e-29
d1ih7a2528 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacte 7e-27
d1q8ia1388 c.55.3.5 (A:2-389) Exonuclease domain of family B 2e-26
d1tgoa1347 c.55.3.5 (A:1-347) Exonuclease domain of family B 3e-21
d1noya_372 c.55.3.5 (A:) Exonuclease domain of family B DNA p 3e-15
d1ih7a1375 c.55.3.5 (A:1-375) Exonuclease domain of family B 3e-09
d1s5ja1410 c.55.3.5 (A:40-449) Exonuclease domain of family B 1e-07
>d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Length = 426 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: Family B DNA polymerase
species: Archaeon Thermococcus gorgonarius [TaxId: 71997]

 Score =  195 bits (497), Expect = 6e-55
 Identities = 104/471 (22%), Positives = 192/471 (40%), Gaps = 50/471 (10%)

Query: 627  RVESIMLRLSRLNNFVAVS-PSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYP 685
             VE  +LR +   N +A + P  ++ A  R   +   + EPE  L+ + I+ LDF+SLYP
Sbjct: 5    LVEWFLLRKAYERNELAPNKPDERELARRRESYAGGYVKEPERGLW-ENIVYLDFRSLYP 63

Query: 686  SVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKS 745
            S+II +N    T                GC + +V+                G  F    
Sbjct: 64   SIIITHNVSPDTL------------NREGCEEYDVA-------------PQVGHKFCKD- 97

Query: 746  IRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFS 805
               G +P +L ++L+ R  VK+ MK    +   +++L  RQ  +K++AN  YGY      
Sbjct: 98   -FPGFIPSLLGDLLEERQKVKKKMKATI-DPIEKKLLDYRQRAIKILANSFYGYY-GYAK 154

Query: 806  GRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEI 865
             R  C E  +SV + GR+ ++  I  +    K+  +V+Y DTD  F   PG   +   + 
Sbjct: 155  ARWYCKECAESVTAWGRQYIETTIREIEE--KFGFKVLYADTDGFFATIPGADAETVKKK 212

Query: 866  GKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRR 925
             KE  + +    P  ++L++E  Y+     TKK+Y           +     +G+E VRR
Sbjct: 213  AKEFLDYINAKLPGLLELEYEGFYKRGFFVTKKKYAVIDE------EDKITTRGLEIVRR 266

Query: 926  DGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYK 985
            D      +   + L  + +  D+      V++   K+    +  + +   ++        
Sbjct: 267  DWSEIAKETQARVLEAILKHGDVEEAVRIVKEVTEKLSKYEVPPEKLVIYEQITRDL-KD 325

Query: 986  PGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRL 1045
              A  P +++A++        + R    + Y+++ G+    +        +    +  + 
Sbjct: 326  YKATGPHVAVAKRLAARGI--KIRPGTVISYIVLKGSG--RIGDRAIPF-DEFDPAKHKY 380

Query: 1046 NSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKS 1096
            ++EYYI   ++P +ER     G     + K   R        +    K K+
Sbjct: 381  DAEYYIENQVLPAVERILRAFG-----YRKEDLRYQKTRQVGLGAWLKPKT 426
>d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} Length = 394 Back     information, alignment and structure
>d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} Length = 415 Back     information, alignment and structure
>d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} Length = 388 Back     information, alignment and structure
>d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} Length = 528 Back     information, alignment and structure
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Length = 388 Back     information, alignment and structure
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Length = 347 Back     information, alignment and structure
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} Length = 372 Back     information, alignment and structure
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} Length = 375 Back     information, alignment and structure
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Length = 410 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1200
d1tgoa2426 Family B DNA polymerase {Archaeon Thermococcus gor 100.0
d1s5ja2415 Family B DNA polymerase {Sulfolobus solfataricus [ 100.0
d1q8ia2394 Family B DNA polymerase {Escherichia coli [TaxId: 100.0
d1ih7a2528 Family B DNA polymerase {Bacteriophage RB69 [TaxId 100.0
d1q8ia1388 Exonuclease domain of family B DNA polymerases {Es 100.0
d1tgoa1347 Exonuclease domain of family B DNA polymerases {Ar 99.97
d1noya_372 Exonuclease domain of family B DNA polymerases {Ba 99.95
d1s5ja1410 Exonuclease domain of family B DNA polymerases {Su 99.94
d1ih7a1375 Exonuclease domain of family B DNA polymerases {Ba 99.94
d2py5a2388 phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 99.9
d1x9ma1204 Exonuclease domain of T7 DNA polymerase {Bacteriop 99.07
d3b6oa1226 Three prime repair exonuclease 1, TREX1 {Mouse (Mu 97.78
d2guia1174 N-terminal exonuclease domain of the epsilon subun 96.79
d1y97a1228 Three prime repair exonuclease 2, TREX2 {Human (Ho 96.69
d2qxfa1467 Exonuclease I {Escherichia coli K12 (Escherichia c 96.17
d1wlja_173 Interferon-stimulated gene 20 kDa protein, ISG20 { 96.11
d1w0ha_200 Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960 95.98
d1yt3a3193 Ribonuclease D, catalytic domain {Escherichia coli 94.42
d2hhva1171 Exonuclease domain of prokaryotic DNA polymerase { 93.39
d2hbka2292 Exosome complex exonuclease RRP6 {Baker's yeast (S 92.53
d1vk0a_206 Hypothetical protein AT5G06450 {Thale-cress (Arabi 91.47
d1kfsa1195 Exonuclease domain of prokaryotic DNA polymerase { 90.34
d2f96a1202 Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287 83.98
d2igia1180 Oligoribonuclease {Escherichia coli [TaxId: 562]} 81.27
>d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: Family B DNA polymerase
species: Archaeon Thermococcus gorgonarius [TaxId: 71997]

Probab=100.00  E-value=7.6e-83  Score=752.07  Aligned_cols=403  Identities=25%  Similarity=0.394  Sum_probs=362.8

Q ss_pred             hhhhhhhhhhccccccccccC-CChhhhcccCCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccc
Q psy5921         625 QFRVESIMLRLSRLNNFVAVS-PSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVE  703 (1200)
Q Consensus       625 q~rvEslLlr~a~~~~~I~p~-ps~~~~~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~  703 (1200)
                      +.+||++|+|+|+++|+++|+ |+..+....++.+.||+|++|++|||+ ||++|||+|||||||++|||||+|++....
T Consensus         3 g~~ve~~~~~~~~~~~~~~p~~~~~~~~~~~~~~y~Gg~V~~p~~G~~~-~v~~lDf~SLYPsii~~~Ni~p~T~~~~~~   81 (426)
T d1tgoa2           3 GNLVEWFLLRKAYERNELAPNKPDERELARRRESYAGGYVKEPERGLWE-NIVYLDFRSLYPSIIITHNVSPDTLNREGC   81 (426)
T ss_dssp             HHHHHHHHHHHHHHTTBCCCCCCCHHHHHHCCCCCCCCCEECCCCSEEE-EEEEEEESSHHHHHHHHTTCSTTTBTCTTC
T ss_pred             hHHHHHHHHHHHHHCCEEeccCCccccccccccCcCCceEccCCCCcCC-CeEEEEccchhHHHHHHhCCChhhcCCCCc
Confidence            567999999999999999986 444444456678899999999999996 699999999999999999999999964210


Q ss_pred             cCCCCCCCCCcccccccChHHHhhccCcEeeCC-CceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHH
Q psy5921         704 HLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISP-SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVL  782 (1200)
Q Consensus       704 ~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sP-nG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~l  782 (1200)
                                                ++..+.| +|+.|+++  ++||+|++|++|++.|+++|+.||..+ ++.++++|
T Consensus        82 --------------------------~~~~~~~~~g~~~~~~--~~Gilp~~l~~l~~~R~~~K~~~k~~~-~~~~~~~~  132 (426)
T d1tgoa2          82 --------------------------EEYDVAPQVGHKFCKD--FPGFIPSLLGDLLEERQKVKKKMKATI-DPIEKKLL  132 (426)
T ss_dssp             --------------------------SSEEECTTTCCEEECS--SCCHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred             --------------------------cccccCCCCCceEecc--CCCchHHHHHHHHHHHHHhhhhhhhcc-chHHHHHH
Confidence                                      2233444 78999986  799999999999999999999999875 78889999


Q ss_pred             HHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCCCHHHH
Q psy5921         783 HARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA  862 (1200)
Q Consensus       783 d~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~~~~ea  862 (1200)
                      |.+|+|+|+++||+|||+|+++ +||||.++|++||++||++|..+++.|++  ++|++|||||||||||.+++.+.+++
T Consensus       133 d~~Q~a~Ki~~NS~YG~~G~~~-~~~~~~~~A~~iT~~GR~~i~~~~~~i~~--~~g~~ViYgDTDSi~v~~~~~~~~~~  209 (426)
T d1tgoa2         133 DYRQRAIKILANSFYGYYGYAK-ARWYCKECAESVTAWGRQYIETTIREIEE--KFGFKVLYADTDGFFATIPGADAETV  209 (426)
T ss_dssp             HHHHHHHHHHHTTHHHHHHCTT-CTTCCHHHHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEEESSEEEEECTTCCHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHhccc-hhhhhhhhhhhhHHHHHHHHHHHHHHHHH--HcCCeeeeecccceEEecCCchhHHH
Confidence            9999999999999999999984 79999999999999999999999999986  57999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCCCceeeeeeceechhhccccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHH
Q psy5921         863 FEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLL  942 (1200)
Q Consensus       863 ~~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~L  942 (1200)
                      +++++++++.|++.++.+++||||++|.++++++||||+++..      ++++++||+|++|||+|+++|+++.++|+.|
T Consensus       210 ~~~~~~~~~~i~~~~~~~i~le~E~iy~~~l~~~KKrY~~~~~------~~k~~~kGie~~Rrd~~~~~k~~~~~vl~~i  283 (426)
T d1tgoa2         210 KKKAKEFLDYINAKLPGLLELEYEGFYKRGFFVTKKKYAVIDE------EDKITTRGLEIVRRDWSEIAKETQARVLEAI  283 (426)
T ss_dssp             HHHHHHHHHHHHTTSCTTCCEEEEEEEEEEEEEETTEEEEECT------TCCEEEESCSCCSSCBCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcchhhhheeeeeeecceecccceeeeec------CCCcccceeeecCCCCchhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998753      2689999999999999999999999999999


Q ss_pred             hccCCHHHHHHHHHHHHHHHHcCCCChhhhhHhhcc-cCCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCeeeEEEEeC
Q psy5921         943 FETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSG 1021 (1200)
Q Consensus       943 l~~~d~~~v~~yl~~~~~kl~~g~v~~~dlii~K~l-r~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI~~g 1021 (1200)
                      |.++|++++.+++.+.+.+|.+|++|+++|++++++ +.+++|+..  .||+.+|+|+.+++  ..+++||||+|||+++
T Consensus       284 l~~~d~~~~~~~i~~~~~~l~~~~~~~edl~i~~~l~k~~~~Yk~~--~phv~~a~rl~~~g--~~i~~GdrI~Yvivk~  359 (426)
T d1tgoa2         284 LKHGDVEEAVRIVKEVTEKLSKYEVPPEKLVIYEQITRDLKDYKAT--GPHVAVAKRLAARG--IKIRPGTVISYIVLKG  359 (426)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHTTCSCGGGSCEEEECSSCGGGSCSS--SSHHHHHHHHHHHT--CCCCTTSEEEEEEBCC
T ss_pred             hccCccchhhHHHHHHHHHHhcCCCCHHHHhhhhhhccChhhcccc--CcHHHHHHHHHhcC--CCCCCCCEEEEEEEeC
Confidence            999999999999999999999999999999999999 557889753  68999999999884  4678999999999987


Q ss_pred             CCCCCcccccCChhhhhccCCCCCChHHHhhccchhHHHHHHhhcCCChhhh
Q psy5921        1022 APGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPW 1073 (1200)
Q Consensus      1022 ~~~~~~~~r~~~P~e~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~G~d~~~w 1073 (1200)
                      ++  ++.+++..|.++ .+.++.||++||+++||++||.|||++|||+.++.
T Consensus       360 ~~--~~~d~~~~~~~~-~~~~~~iD~~yYiekqi~~pl~~il~~~g~~~e~l  408 (426)
T d1tgoa2         360 SG--RIGDRAIPFDEF-DPAKHKYDAEYYIENQVLPAVERILRAFGYRKEDL  408 (426)
T ss_dssp             SS--STTCCEEEGGGC-CTTTCCBCHHHHHHHTTGGGTHHHHHTTTCCGGGS
T ss_pred             CC--cccceeecHHHh-CccCCCCCHHHHHHHHHHHHHHHHHhhcCCCHHHh
Confidence            54  567888877765 44568999999999999999999999999988753
>d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} Back     information, alignment and structure
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Back     information, alignment and structure
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} Back     information, alignment and structure
>d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} Back     information, alignment and structure
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} Back     information, alignment and structure
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Back     information, alignment and structure
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure