Psyllid ID: psy5943

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MVGINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYYGTSEQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSMLTKVNLENKNTLGV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEcccEEccccHHHHHHHHHccccccccEEEccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHcccccccccccEEEccccccccccccEEEEEccccccccccHHHHHHHHHccccccccHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHcccccc
Coil and Loop (DISEMBL)
MVGINVLVDLLTLCHLHVSRATHVVQsnvleagsgpgledeekewyygtseqskgpvtFHQIKHlwstgelnpktKVWAHGMESwkslhqvpqlKWTLVAKnsggvmnetELGCLILSMLTKVnlenkntlgv
Flexible Loop (DISEMBL)
MVGINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYYGTSEQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSmltkvnlenkntlgv
Low Complexity Region (SEG)
MVGINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYYGTSEQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSMLTKVNLENKNTLGV
Disordered region (IsUnstruct)
**GINVLVDLLTLCHLHVSRATHVVQSNVLE************EWYYGTS***KGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSMLTKVNL********
Disordered Region (DISOPRED)
*VGINVLVDLLTLCHLHVSRATHVVQSN***********DEEKEWYYGTSEQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVA*****VMNETELGCLILSMLTKVNLENK*****
Disordered Region (DISEMBL)
MVGINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYYGTSEQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSMLTKVNLENKNTLGV
Disordered Region (DISPRO)
MVGINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYYGTSEQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSMLTKVNLENK**L**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVGINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYYGTSEQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSMLTKVNLENKNTLGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
O75165	2243	DnaJ homolog subfamily C	yes	N/A	0.864	0.051	0.541	6e-32
F4IVL6	2554	DnaJ homolog subfamily C	yes	N/A	0.834	0.043	0.330	1e-08

>sp|O75165|DJC13_HUMAN DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1 SV=5

 Score =  135 bits (341), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 65/120 (54%), Positives = 87/120 (72%), Gaps = 5/120 (4%)

Query: 3    GINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDE-EKEWYYGTSEQSK-GPVTFH 60
            GI +LVDLLTL HLHVSRAT  +QSNV+EA   P ++ E EKEWY+G +++ + GP  FH
Sbjct: 935  GIRILVDLLTLAHLHVSRATVPLQSNVIEA--APDMKRESEKEWYFGNADKERSGPYGFH 992

Query: 61   QIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSML 120
            +++ LW+ G LN KT+ WA GM+ W+ L  +PQLKW L+A     V+NET+L  LIL+ML
Sbjct: 993  EMQELWTKGMLNAKTRCWAQGMDGWRPLQSIPQLKWCLLASGQ-AVLNETDLATLILNML 1051

Homo sapiens (taxid: 9606)

>sp|F4IVL6|GRV2_ARATH DnaJ homolog subfamily C GRV2 OS=Arabidopsis thaliana GN=GRV2 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 10/121 (8%)

Query: 3    GINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYY---GTSEQSKGPVTF 59
            G  + VDLLT+ H +  R    +QSN++ A +     +  KEW Y   G +E   GPV  
Sbjct: 1130 GCVLAVDLLTVVHENSERTPIPLQSNLIAATA---FMEPPKEWMYIDKGGAEV--GPVEK 1184

Query: 60   HQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSM 119
              I+ LWS  +++  TK  A GM  WK L  + +L+W +  +    V+  +++G   LS+
Sbjct: 1185 DVIRSLWSKKDIDWTTKCRALGMSDWKKLRDIRELRWAVAVRVP--VLTPSQVGDAALSI 1242

Query: 120  L 120
            L
Sbjct: 1243 L 1243

Required for endosome formation, vacuolar protein sorting and determination of the embryo growth axis; necessary for the transport of proteins into protein storage vacuoles (PSVs). Participates to vesicle trafficking from the endosome to the central vacuole. Involved in the regulation of shoot phototropism and gravitropism, probably through the positioning of specialized amyloplasts (statoliths) in endodermal cells.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
390343718	2228	PREDICTED: LOW QUALITY PROTEIN: dnaJ hom	0.894	0.053	0.557	5e-31
297671991	2243	PREDICTED: dnaJ homolog subfamily C memb	0.864	0.051	0.55	2e-30
344249547	1532	DnaJ-like subfamily C member 13 [Cricetu	0.864	0.075	0.541	3e-30
34533879	1033	unnamed protein product [Homo sapiens]	0.864	0.111	0.541	3e-30
395816513	2243	PREDICTED: dnaJ homolog subfamily C memb	0.864	0.051	0.55	3e-30
432092979	2235	DnaJ like protein subfamily C member 13	0.864	0.051	0.541	4e-30
426342150	2210	PREDICTED: dnaJ homolog subfamily C memb	0.864	0.052	0.541	4e-30
417406939	2242	Putative endocytosis protein rme-8 [Desm	0.864	0.051	0.541	4e-30
417406933	2230	Putative endocytosis protein rme-8 [Desm	0.864	0.051	0.541	4e-30
112421122	2243	dnaJ homolog subfamily C member 13 [Homo	0.864	0.051	0.541	4e-30

>gi|390343718|ref|XP_003725949.1| PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 13-like [Strongylocentrotus purpuratus]

 Score =  139 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 68/122 (55%), Positives = 86/122 (70%), Gaps = 3/122 (2%)

Query: 3    GINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYYGTSEQSK-GPVTFHQ 61
            GI VLVDLLTL HLHVSRAT   Q+NV+EA S   +  +EKEWYYG   + + GP +F +
Sbjct: 924  GIKVLVDLLTLAHLHVSRATVPTQTNVIEA-SPDSMVAQEKEWYYGNGPRERLGPYSFSE 982

Query: 62   IKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSMLT 121
            +K LW  G LN KT+ WA G+E WK LH +PQLKW L+A  +  VMNE++L  LIL+ML 
Sbjct: 983  MKDLWDDGSLNAKTRCWAQGLEGWKPLHTIPQLKWCLLATGT-PVMNESDLATLILNMLI 1041

Query: 122  KV 123
            K+
Sbjct: 1042 KI 1043

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|297671991|ref|XP_002814100.1| PREDICTED: dnaJ homolog subfamily C member 13 [Pongo abelii]

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/120 (55%), Positives = 87/120 (72%), Gaps = 5/120 (4%)

Query: 3    GINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDE-EKEWYYGTSEQSK-GPVTFH 60
            GI +LVDLLTL HLHVSRAT  +QSNV+EA   P ++ E EKEWY+G +++ + GP  FH
Sbjct: 935  GIRILVDLLTLAHLHVSRATVPLQSNVIEA--APDMKRESEKEWYFGNADKERSGPYGFH 992

Query: 61   QIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSML 120
            +I+ LW+ G LN KT+ WA GM+ W+ L  +PQLKW L+A     V+NET+L  LIL+ML
Sbjct: 993  EIQELWTKGMLNAKTRCWAQGMDGWRPLQSIPQLKWCLLASGQ-AVLNETDLATLILNML 1051

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344249547|gb|EGW05651.1| DnaJ-like subfamily C member 13 [Cricetulus griseus]

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/120 (54%), Positives = 87/120 (72%), Gaps = 5/120 (4%)

Query: 3    GINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDE-EKEWYYGTSEQSK-GPVTFH 60
            GI +LVDLLTL HLHVSRAT  +QSNV+EA   P ++ E EKEWY+G +++ + GP  FH
Sbjct: 935  GIRILVDLLTLAHLHVSRATVPLQSNVIEA--SPDMKRESEKEWYFGNADKERSGPYGFH 992

Query: 61   QIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSML 120
            +++ LW+ G LN KT+ WA GM+ W+ L  +PQLKW L+A     V+NET+L  LIL+ML
Sbjct: 993  EMQELWAKGMLNAKTRCWAQGMDGWRPLQAIPQLKWCLLASGQ-AVLNETDLATLILNML 1051

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|34533879|dbj|BAC86835.1| unnamed protein product [Homo sapiens]

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/120 (54%), Positives = 87/120 (72%), Gaps = 5/120 (4%)

Query: 3   GINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDE-EKEWYYGTSEQSK-GPVTFH 60
           GI +LVDLLTL HLHVSRAT  +QSNV+EA   P ++ E EKEWY+G +++ + GP  FH
Sbjct: 318 GIRILVDLLTLAHLHVSRATVPLQSNVIEA--APDMKRESEKEWYFGNADKERSGPYGFH 375

Query: 61  QIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSML 120
           +++ LW+ G LN KT+ WA GM+ W+ L  +PQLKW L+A     V+NET+L  LIL+ML
Sbjct: 376 EMQELWTKGMLNAKTRCWAQGMDGWRPLQSIPQLKWCLLASGQ-AVLNETDLATLILNML 434

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395816513|ref|XP_003781746.1| PREDICTED: dnaJ homolog subfamily C member 13 [Otolemur garnettii]

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/120 (55%), Positives = 87/120 (72%), Gaps = 5/120 (4%)

Query: 3    GINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDE-EKEWYYGTSEQSK-GPVTFH 60
            GI +LVDLLTL HLHVSRAT  +QSNVLEA   P ++ E EKEWY+G +++ + GP  FH
Sbjct: 935  GIRILVDLLTLAHLHVSRATVPLQSNVLEA--APDMKRESEKEWYFGNADKERSGPYGFH 992

Query: 61   QIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSML 120
            +++ LW+ G LN KT+ WA GM+ W+ L  +PQLKW L+A     V+NET+L  LIL+ML
Sbjct: 993  EMQELWTKGMLNAKTRCWAQGMDGWRPLQAIPQLKWCLLASGQ-AVLNETDLATLILNML 1051

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432092979|gb|ELK25337.1| DnaJ like protein subfamily C member 13 [Myotis davidii]

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/120 (54%), Positives = 88/120 (73%), Gaps = 5/120 (4%)

Query: 3    GINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDE-EKEWYYGTSEQSK-GPVTFH 60
            GI +LVDLLTL HLHVSRAT  +QSNV+EA   P ++ E EKEWY+G++++ + GP  FH
Sbjct: 935  GIRILVDLLTLAHLHVSRATVPLQSNVIEA--APDMKRESEKEWYFGSADKERSGPYGFH 992

Query: 61   QIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSML 120
            +++ LW+ G LN KT+ WA GM+ W+ L  +PQLKW L+A     V+NET+L  LIL+ML
Sbjct: 993  EMQELWTKGMLNAKTRCWAQGMDGWRPLQAIPQLKWCLLASGQ-AVLNETDLATLILNML 1051

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426342150|ref|XP_004036375.1| PREDICTED: dnaJ homolog subfamily C member 13 [Gorilla gorilla gorilla]

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/120 (54%), Positives = 87/120 (72%), Gaps = 5/120 (4%)

Query: 3    GINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDE-EKEWYYGTSEQSK-GPVTFH 60
            GI +LVDLLTL HLHVSRAT  +QSNV+EA   P ++ E EKEWY+G +++ + GP  FH
Sbjct: 940  GIRILVDLLTLAHLHVSRATVPLQSNVIEA--APDMKRESEKEWYFGNADKERSGPYGFH 997

Query: 61   QIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSML 120
            +++ LW+ G LN KT+ WA GM+ W+ L  +PQLKW L+A     V+NET+L  LIL+ML
Sbjct: 998  EMQELWTKGMLNAKTRCWAQGMDGWRPLQSIPQLKWCLLASGQ-AVLNETDLATLILNML 1056

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|417406939|gb|JAA50108.1| Putative endocytosis protein rme-8 [Desmodus rotundus]

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/120 (54%), Positives = 87/120 (72%), Gaps = 5/120 (4%)

Query: 3    GINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDE-EKEWYYGTSEQSK-GPVTFH 60
            GI +LVDLLTL HLHVSRAT  +QSNV+EA   P ++ E EKEWY+G +++ + GP  FH
Sbjct: 934  GIRILVDLLTLAHLHVSRATVPLQSNVIEA--APDMKRESEKEWYFGNADKERSGPYGFH 991

Query: 61   QIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSML 120
            +++ LW+ G LN KT+ WA GM+ W+ L  +PQLKW L+A     V+NET+L  LIL+ML
Sbjct: 992  EMQELWTKGTLNAKTRCWAQGMDGWRPLQSIPQLKWCLLASGQ-AVLNETDLATLILNML 1050

Source: Desmodus rotundus

Species: Desmodus rotundus

Genus: Desmodus

Family: Phyllostomidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|417406933|gb|JAA50105.1| Putative endocytosis protein rme-8 [Desmodus rotundus]

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/120 (54%), Positives = 87/120 (72%), Gaps = 5/120 (4%)

Query: 3    GINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDE-EKEWYYGTSEQSK-GPVTFH 60
            GI +LVDLLTL HLHVSRAT  +QSNV+EA   P ++ E EKEWY+G +++ + GP  FH
Sbjct: 934  GIRILVDLLTLAHLHVSRATVPLQSNVIEA--APDMKRESEKEWYFGNADKERSGPYGFH 991

Query: 61   QIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSML 120
            +++ LW+ G LN KT+ WA GM+ W+ L  +PQLKW L+A     V+NET+L  LIL+ML
Sbjct: 992  EMQELWTKGTLNAKTRCWAQGMDGWRPLQSIPQLKWCLLASGQ-AVLNETDLATLILNML 1050

Source: Desmodus rotundus

Species: Desmodus rotundus

Genus: Desmodus

Family: Phyllostomidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|112421122|ref|NP_056083.3| dnaJ homolog subfamily C member 13 [Homo sapiens] gi|311033497|sp|O75165.5|DJC13_HUMAN RecName: Full=DnaJ homolog subfamily C member 13; AltName: Full=Required for receptor-mediated endocytosis 8; Short=RME-8 gi|55056845|gb|AAV41096.1| DnaJ domain-containing protein RME-8 [Homo sapiens]

 Score =  135 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/120 (54%), Positives = 87/120 (72%), Gaps = 5/120 (4%)

Query: 3    GINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDE-EKEWYYGTSEQSK-GPVTFH 60
            GI +LVDLLTL HLHVSRAT  +QSNV+EA   P ++ E EKEWY+G +++ + GP  FH
Sbjct: 935  GIRILVDLLTLAHLHVSRATVPLQSNVIEA--APDMKRESEKEWYFGNADKERSGPYGFH 992

Query: 61   QIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSML 120
            +++ LW+ G LN KT+ WA GM+ W+ L  +PQLKW L+A     V+NET+L  LIL+ML
Sbjct: 993  EMQELWTKGMLNAKTRCWAQGMDGWRPLQSIPQLKWCLLASGQ-AVLNETDLATLILNML 1051

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
FB|FBgn0015477	2408	Rme-8 "Receptor mediated endoc	0.879	0.048	0.467	1.9e-24
WB|WBGene00004378	2279	rme-8 [Caenorhabditis elegans	0.887	0.051	0.371	6.6e-15
DICTYBASE|DDB_G0286293	2592	dnajc13 "DnaJ (Hsp40) homolog,	0.849	0.043	0.360	3.1e-11
TAIR|locus:2039543	2554	GRV2 "GRAVITROPISM DEFECTIVE 2	0.864	0.045	0.336	1.8e-08
TAIR|locus:2181452	519	ELF9 "EARLY FLOWERING 9" [Arab	0.375	0.096	0.372	0.00045

FB|FBgn0015477 Rme-8 "Receptor mediated endocytosis 8" [Drosophila melanogaster (taxid:7227)]

 Score = 296 (109.3 bits), Expect = 1.9e-24, P = 1.9e-24
 Identities = 58/124 (46%), Positives = 80/124 (64%)

Query:     4 INVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYY-----GTSEQSKGPVT 58
             +  LVDL+TL HLH  RA    ++NV+EAG   G   EEK+WYY     G   + +GP+T
Sbjct:   932 VQCLVDLITLAHLHKGRAQLNTKTNVIEAGPNMGTY-EEKDWYYNIEKDGQKPERQGPIT 990

Query:    59 FHQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILS 118
             + ++K LW  G + PKT+ WA GM+ W+SL Q+PQLKW L+AK +  + +ETEL   IL 
Sbjct:   991 YSELKELWQKGLITPKTRCWAIGMDGWRSLQQIPQLKWCLIAKGTP-LYDETELSSKILD 1049

Query:   119 MLTK 122
             +L K
Sbjct:  1050 ILIK 1053

GO:0006897 "endocytosis" evidence=NAS

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0031201 "SNARE complex" evidence=IDA

WB|WBGene00004378 rme-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 206 (77.6 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 49/132 (37%), Positives = 75/132 (56%)

Query:     6 VLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYYGTSEQSK-GPVTFHQIKH 64
             +LVDL  L HLHV RA    Q+NV+EA +    E   +EWYY   +  + GP++F ++K 
Sbjct:   944 LLVDLCVLAHLHVQRAKVQNQTNVIEASAEQMAEGGSEEWYYHDKDAKQVGPLSFEKMKS 1003

Query:    65 LWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAK-------NSG-G-----VMNETE 111
             L++   +  K+++WA GM+ W SL  VPQ +WT+  +       N+G G     VMN T+
Sbjct:  1004 LYTEKTIFEKSQIWAAGMDKWMSLAAVPQFRWTVCQQKDQPNEINTGKGPFQATVMNFTD 1063

Query:   112 LGCLILSMLTKV 123
             L  L L  + ++
Sbjct:  1064 LSVLCLDTILQM 1075

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0007028 "cytoplasm organization" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0043652 "engulfment of apoptotic cell" evidence=IMP

GO:0010008 "endosome membrane" evidence=IDA

GO:0051087 "chaperone binding" evidence=ISS

GO:0005769 "early endosome" evidence=IDA

GO:0055037 "recycling endosome" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0286293 dnajc13 "DnaJ (Hsp40) homolog, subfamily C, member 13" [Dictyostelium discoideum (taxid:44689)]

 Score = 172 (65.6 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 44/122 (36%), Positives = 66/122 (54%)

Query:     3 GINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYYGTSEQSKGPVTFHQI 62
             GI  L+DL+TL H H    T+  +  +L         D ++E      +Q  GPV+   +
Sbjct:   990 GIYRLLDLITLIHTHY---TYGEEGKLLPEWYYA--VDVQQEGSGVIQQQKAGPVSRTDL 1044

Query:    63 KHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWT----LVAKNSGGVMNETELGCLILS 118
               L ++ ++N  TK WA G E WK L+Q+P+L+WT    L   N GGV+ + ELG +IL 
Sbjct:  1045 FDLLNSKKINRNTKCWAQGTEKWKPLYQIPELRWTIMNGLTHGNVGGVLPKAELGSVILD 1104

Query:   119 ML 120
             +L
Sbjct:  1105 IL 1106

GO:0005575 "cellular_component" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2039543 GRV2 "GRAVITROPISM DEFECTIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 41/122 (33%), Positives = 65/122 (53%)

Query:     1 MVGINVL-VDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYYGTSEQSK-GPVT 58
             +VG  VL VDLLT+ H +  R    +QSN++ A +     +  KEW Y     ++ GPV 
Sbjct:  1127 VVGGCVLAVDLLTVVHENSERTPIPLQSNLIAATA---FMEPPKEWMYIDKGGAEVGPVE 1183

Query:    59 FHQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILS 118
                I+ LWS  +++  TK  A GM  WK L  + +L+W +  +    V+  +++G   LS
Sbjct:  1184 KDVIRSLWSKKDIDWTTKCRALGMSDWKKLRDIRELRWAVAVRVP--VLTPSQVGDAALS 1241

Query:   119 ML 120
             +L
Sbjct:  1242 IL 1243

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0006897 "endocytosis" evidence=ISS

GO:0009660 "amyloplast organization" evidence=IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0009959 "negative gravitropism" evidence=IMP

GO:0007032 "endosome organization" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA;IMP

GO:0005770 "late endosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007033 "vacuole organization" evidence=RCA;IMP

GO:0042594 "response to starvation" evidence=IMP

GO:0051301 "cell division" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2181452 ELF9 "EARLY FLOWERING 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 0.00045, P = 0.00045
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query:    45 WYY-GTSEQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQL 94
             WY  G ++Q+ GP TF ++ + +  G L   T VWA G   W+ L  +P L
Sbjct:    25 WYILGENQQNLGPYTFSELCNHFRNGYLLETTLVWADGRSEWQPLSAIPDL 75


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      133       133   0.00091  102 3  11 23  0.46    31
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  161 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.23u 0.07s 14.30t   Elapsed:  00:00:15
  Total cpu time:  14.23u 0.07s 14.30t   Elapsed:  00:00:16
  Start:  Thu Aug 15 12:58:49 2013   End:  Thu Aug 15 12:59:05 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IMP

GO:0003729 "mRNA binding" evidence=IDA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O75165	DJC13_HUMAN	No assigned EC number	0.5416	0.8646	0.0512	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	133
pfam14237	45	pfam14237, DUF4339, Domain of unknown function (DU	7e-11

>gnl|CDD|206405 pfam14237, DUF4339, Domain of unknown function (DUF4339)

 Score = 53.4 bits (129), Expect = 7e-11
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query: 44 EWYYGTSEQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSL 88
          +WYY  + Q  GP +  +++ L ++G++ P T VW  GM  W+ L
Sbjct: 1  QWYYARNGQQAGPFSLEELRQLIASGQITPDTLVWKQGMSDWQPL 45

This domain is found in bacteria, archaea and eukaryotes, and is approximately 50 amino acids in length. There are two completely conserved residues (G and W) that may be functionally important. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
KOG1789|consensus	2235		99.9
PF14237	45	DUF4339: Domain of unknown function (DUF4339)	99.8
PF02213	57	GYF: GYF domain; InterPro: IPR003169 The glycine-t	98.1
cd00072	57	GYF GYF domain: contains conserved Gly-Tyr-Phe res	98.02
smart00444	56	GYF Contains conserved Gly-Tyr-Phe residues. Proli	97.46
KOG1862|consensus	673		90.49

>KOG1789|consensus

Probab=99.90  E-value=1.7e-25  Score=207.69  Aligned_cols=122  Identities=39%  Similarity=0.669  Sum_probs=113.8

Q ss_pred             CCCceeeeeehhhhhhccCccccccccceeecCCCCCCCCCCcceEEecCC-eeeCCCCHHHHHHHHHcCccCCCCeeec
Q psy5943           1 MVGINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYYGTSE-QSKGPVTFHQIKHLWSTGELNPKTKVWA   79 (133)
Q Consensus         1 ~~g~~~lvd~~~lah~~~~~~~~~~~~n~i~~~~~~~~~~~~~~Wyy~~~g-~q~GP~s~~eL~~l~~~G~I~~~TlVW~   79 (133)
                      ++|+.++||+.+++|+|++|+.+|.|||+|+++.+ |+  .+++|||.+.| ++.||++++-++.+|.+..|...|.||.
T Consensus       917 ~~~~~l~vdl~~~~h~~~~r~~i~~qsn~i~asa~-~~--~~~ew~y~dk~~~~vgp~~~~~~~sl~s~k~i~~~s~~~a  993 (2235)
T KOG1789|consen  917 SNILPLLVDLCVLAHLHVQRAKVQNQTNVIEASAE-QM--AEEEWYYHDKDAKQVGPLSFEKMKSLYTEKTIFEKSQIWA  993 (2235)
T ss_pred             ecchHHHHHHHHHHHHhhhccCCccchhHHHhhhh-hc--CchhheeecCCccccCchhHHHHHHHhcccchhHHHHHHH
Confidence            47899999999999999999999999999999998 43  67899999875 8899999999999999999999999999


Q ss_pred             CCcccceecCCcchHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHhh
Q psy5943          80 HGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSMLTKVNLEN  127 (133)
Q Consensus        80 eGm~~W~p~~~v~eL~~~l~~~~pPP~l~~~~~~~~~L~~L~~~~~~~  127 (133)
                      -||++|+.+++|+||+|.....  -|.|++++++.+|||||+.||++.
T Consensus       994 ~gm~~w~~l~~i~~~rw~v~~~--ipv~~~s~~~~~~l~~L~~Mc~~f 1039 (2235)
T KOG1789|consen  994 AGMDKWMSLAAVPQFRWTVCQQ--IPVMNFTDLSVLCLDTLLQMCEFF 1039 (2235)
T ss_pred             hhhhHHHhhhhhhhhhhhhhhc--ccccCHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999998433  489999999999999999999975

>PF14237 DUF4339: Domain of unknown function (DUF4339)

Probab=99.80  E-value=9.5e-20  Score=112.50  Aligned_cols=45  Identities=44%  Similarity=1.076  Sum_probs=44.0

Q ss_pred             ceEEecCCeeeCCCCHHHHHHHHHcCccCCCCeeecCCcccceec
Q psy5943          44 EWYYGTSEQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSL   88 (133)
Q Consensus        44 ~Wyy~~~g~q~GP~s~~eL~~l~~~G~I~~~TlVW~eGm~~W~p~   88 (133)
                      +|||.++|++.||||++||++++++|+|+++|+||++||++|+|+
T Consensus         1 ~Wy~~~~g~~~GP~s~~el~~l~~~g~i~~~tlvw~~g~~~W~pl   45 (45)
T PF14237_consen    1 EWYYARNGQQQGPFSLEELRQLISSGEIDPDTLVWKEGMSDWKPL   45 (45)
T ss_pred             CEEEeCCCeEECCcCHHHHHHHHHcCCCCCCCeEeCCChhhceEC
Confidence            699999999999999999999999999999999999999999986

>PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif

Probab=98.10  E-value=3.9e-06  Score=53.89  Aligned_cols=51  Identities=18%  Similarity=0.415  Sum_probs=39.9

Q ss_pred             cceEEecC-CeeeCCCCHHHHHHHHHcCccCCCCeeecCCcccc-eecCCcch
Q psy5943          43 KEWYYGTS-EQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESW-KSLHQVPQ   93 (133)
Q Consensus        43 ~~Wyy~~~-g~q~GP~s~~eL~~l~~~G~I~~~TlVW~eGm~~W-~p~~~v~e   93 (133)
                      +.|+|.+. |+.+|||+.++|+..+++|-.+.+..|++.+-+++ .+...+.+
T Consensus         1 ~~W~Y~d~~g~~qGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~~~~~~~~~~   53 (57)
T PF02213_consen    1 KMWYYKDPDGNIQGPFSSEQMQAWYKQGYFPDDLQVRRVDDTQFIDPFGSIDR   53 (57)
T ss_dssp             -EEEEESTTS-EEEEEEHHHHHHHHHTTSSTTT-EEEETTSTTT--SSCECCG
T ss_pred             CEeEEECCCCCcCCCcCHHHHHHHHHCCCCCCCcEEEEecCCCCcccchhhhh
Confidence            47999976 69999999999999999999999999999976555 55555443

It was identified in the human intracellular protein termed CD2 binding protein 2 (CD2BP2), which binds to a site containing two tandem PPPGHR segments within the cytoplasmic region of CD2. Binding experiments and mutational analyses have demonstrated the critical importance of the GYF tripeptide in ligand binding. A GYF domain is also found in several other eukaryotic proteins of unknown function []. It has been proposed that the GYF domain found in these proteins could also be involved in proline-rich sequence recognition []. Resolution of the structure of the CD2BP2 GYF domain by NMR spectroscopy revealed a compact domain with a beta-beta-alpha-beta-beta topology, where the single alpha-helix is tilted away from the twisted, anti-parallel beta-sheet. The conserved residues of the GYF domain create a contiguous patch of predominantly hydrophobic nature which forms an integral part of the ligand-binding site []. There is limited homology within the C-terminal 20-30 amino acids of various GYF domains, supporting the idea that this part of the domain is structurally but not functionally important [].; GO: 0005515 protein binding; PDB: 1SYX_F 1L2Z_A 1GYF_A 1WH2_A 3FMA_C 3K3V_A.

>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins

Probab=98.02  E-value=8.1e-06  Score=52.85  Aligned_cols=49  Identities=16%  Similarity=0.392  Sum_probs=43.9

Q ss_pred             cceEEecC-CeeeCCCCHHHHHHHHHcCccCCCCeeecC-CcccceecCCc
Q psy5943          43 KEWYYGTS-EQSKGPVTFHQIKHLWSTGELNPKTKVWAH-GMESWKSLHQV   91 (133)
Q Consensus        43 ~~Wyy~~~-g~q~GP~s~~eL~~l~~~G~I~~~TlVW~e-Gm~~W~p~~~v   91 (133)
                      ..|+|.+. |+.+|||+.++|+..+++|-.+.+-.|++. ....|.++.++
T Consensus         2 ~~W~Y~d~~g~vqGPF~~~~M~~W~~~gyF~~~l~vr~~~~~~~f~~l~~~   52 (57)
T cd00072           2 VQWFYKDPQGEIQGPFSASQMLQWYQAGYFPDGLQVRRLDNGGEFYTLGDI   52 (57)
T ss_pred             cEEEEECCCCCCcCCcCHHHHHHHHHCCCCCCCeEEEECCCCCCcEEHHHH
Confidence            57999975 788999999999999999999999999999 55789988775

Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.

>smart00444 GYF Contains conserved Gly-Tyr-Phe residues

Probab=97.46  E-value=0.00031  Score=45.27  Aligned_cols=50  Identities=16%  Similarity=0.377  Sum_probs=44.0

Q ss_pred             ceEEecC-CeeeCCCCHHHHHHHHHcCccCCCCeeecCCcccceecCCcch
Q psy5943          44 EWYYGTS-EQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQ   93 (133)
Q Consensus        44 ~Wyy~~~-g~q~GP~s~~eL~~l~~~G~I~~~TlVW~eGm~~W~p~~~v~e   93 (133)
                      .|+|.+. |+.+||||-++|+..+++|-.+.+-.|++.+-++..++..+..
T Consensus         2 ~W~Y~d~~~~iqGPf~~~~M~~W~~~gyF~~~l~vr~~~~~~~~~l~~~~~   52 (56)
T smart00444        2 LWLYKDPDGEIQGPFTASQMSQWYQAGYFPDSLQIKRLNEPPYDTLGDLDR   52 (56)
T ss_pred             EEEEECCCCCEeCCcCHHHHHHHHHCCCCCCCeEEEEcCCCCCCcchhhhh
Confidence            6999975 6889999999999999999999999999999887777766543

Proline-binding domain in CD2-binding protein. Contains conserved Gly-Tyr-Phe residues.

>KOG1862|consensus

Probab=90.49  E-value=0.38  Score=44.25  Aligned_cols=59  Identities=25%  Similarity=0.384  Sum_probs=51.3

Q ss_pred             CCCcceEEecC-CeeeCCCCHHHHHHHHHcCccCCCCeeecCCccc---ceecCCcchHHHHH
Q psy5943          40 DEEKEWYYGTS-EQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMES---WKSLHQVPQLKWTL   98 (133)
Q Consensus        40 ~~~~~Wyy~~~-g~q~GP~s~~eL~~l~~~G~I~~~TlVW~eGm~~---W~p~~~v~eL~~~l   98 (133)
                      +.+..|||.+. |+.+|||+..++...+..|....+..||...=..   ...++.+.++....
T Consensus       201 ~~d~~~~Y~DP~g~iqGPf~~~~v~~W~~~GyF~~~l~vr~~e~~~~~~f~tl~~~~~~l~~~  263 (673)
T KOG1862|consen  201 DEELSWLYKDPQGQIQGPFSASDVLQWYEAGYFPDDLQVRLGENPERSIFQTLGEVMQLLKTR  263 (673)
T ss_pred             CcceeEEeeCCCCcccCCchHHHHHHHHhcCccCCCceeeeccCCccccceehhhhhhhcccc
Confidence            67889999986 7999999999999999999999998888888777   88888887776655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
1wh2_A	78	Hypothetical protein AT5G08430; GYF domain, struct	98.68
3k3v_A	100	Protein SMY2; GYF domain, poly-proline binding, do	97.8
1syx_B	86	CD2BP2, CD2 antigen cytoplasmic tail-binding prote	96.72

>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1

Probab=98.68  E-value=2.4e-08  Score=67.69  Aligned_cols=57  Identities=18%  Similarity=0.392  Sum_probs=49.3

Q ss_pred             CCCCcceEEecC-CeeeCCCCHHHHHHHHHcCccCCCCeeecCCcccceecCCcchHHH
Q psy5943          39 EDEEKEWYYGTS-EQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKW   96 (133)
Q Consensus        39 ~~~~~~Wyy~~~-g~q~GP~s~~eL~~l~~~G~I~~~TlVW~eGm~~W~p~~~v~eL~~   96 (133)
                      ..++..|||.+. |+.+|||+..+|++.+++|-.+.+.+||+.|-++|.++. +.+|-.
T Consensus        14 ~~~~~~W~Y~Dp~g~iQGPFs~~~M~~W~~~GyF~~~L~Vrr~~~~~~~~i~-L~dll~   71 (78)
T 1wh2_A           14 DKEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESAVL-LTDVLR   71 (78)
T ss_dssp             CSSSCCEEEECTTSCEEEEECHHHHHHHHTTTSSCSCCEEEETTSCTTSCEE-HHHHHH
T ss_pred             CcccCeEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEeCCCCcceeh-HHHHHH
Confidence            346789999987 799999999999999999999999999999999998866 554433

>3k3v_A Protein SMY2; GYF domain, poly-proline binding, domain SWAP, ragnya, phosphoprotein, protein binding; 1.80A {Saccharomyces cerevisiae} PDB: 3fma_A

Probab=97.80  E-value=1.3e-05  Score=56.65  Aligned_cols=54  Identities=19%  Similarity=0.335  Sum_probs=44.8

Q ss_pred             CCCCcceEEecC-CeeeCCCCHHHHHHHHHcCccCCCCeeecCCc--------ccceecCCcc
Q psy5943          39 EDEEKEWYYGTS-EQSKGPVTFHQIKHLWSTGELNPKTKVWAHGM--------ESWKSLHQVP   92 (133)
Q Consensus        39 ~~~~~~Wyy~~~-g~q~GP~s~~eL~~l~~~G~I~~~TlVW~eGm--------~~W~p~~~v~   92 (133)
                      ...+..|||.+. |+.+|||+-++|++.+++|-.+.+-.||+.+-        +.|.+++++-
T Consensus        12 ~~~e~~W~Y~Dp~G~vQGPFs~~~M~~W~~~GYF~~~L~VrR~~~~~~p~g~d~~F~~Lgel~   74 (100)
T 3k3v_A           12 VSVESSWRYIDTQGQIHGPFTTQMMSQWYIGGYFASTLQISRLGSTPETLGINDIFITLGELM   74 (100)
T ss_dssp             ---CCEEEEECTTSCEEEEEEHHHHHHHHHTTCCCTTCEEEECCSSCCSSSCBTCCEEHHHHH
T ss_pred             ccccceEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEcCCCCCccCCCCceeeHHHHH
Confidence            446889999986 69999999999999999999999999999753        3788877663

>1syx_B CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2, CD; GYF-domain, thioredoxin-like, spliceosomal proteins, transla immune system complex; 2.35A {Homo sapiens} SCOP: d.76.1.1 PDB: 1gyf_A 1l2z_A

Probab=96.72  E-value=0.0018  Score=44.52  Aligned_cols=52  Identities=17%  Similarity=0.215  Sum_probs=45.3

Q ss_pred             CCcceEEe---cC-CeeeCCCCHHHHHHHHHcCccCCCCeeecCC-c-ccceecCCcc
Q psy5943          41 EEKEWYYG---TS-EQSKGPVTFHQIKHLWSTGELNPKTKVWAHG-M-ESWKSLHQVP   92 (133)
Q Consensus        41 ~~~~Wyy~---~~-g~q~GP~s~~eL~~l~~~G~I~~~TlVW~eG-m-~~W~p~~~v~   92 (133)
                      .+..|.|.   +. ++.+||||-.+|+...++|-.+.+-+|++.| - .+|.++..|.
T Consensus        24 ~~~~WeYKW~~~~~~~i~GPfs~~eM~~W~~~GYF~~~v~vRrvg~~~~~Fy~~~rId   81 (86)
T 1syx_B           24 VDVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRID   81 (86)
T ss_dssp             -CCEEEEESSSSSSSCCEEEEEHHHHHHHHHTTSCTTCCEEEESSSTTCCCEEGGGCC
T ss_pred             ccceEEEEecCCCCCcccCCcCHHHHHHHHHCCCcCCCeEEEEecCCCCceEEeeeee
Confidence            45899998   33 6889999999999999999999999999999 4 5999988874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1wh2a_	78	Hypothetical rotein At5g08430 {Thale cress (Arabid	98.3
d1syxb1	62	GYF domain from cd2bp2 protein {Human (Homo sapien	97.3

>d1wh2a_ d.76.1.1 (A:) Hypothetical rotein At5g08430 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: GYF/BRK domain-like
superfamily: GYF domain
family: GYF domain
domain: Hypothetical rotein At5g08430
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.30  E-value=6.5e-07  Score=59.09  Aligned_cols=63  Identities=19%  Similarity=0.358  Sum_probs=52.2

Q ss_pred             CCCCcceEEecC-CeeeCCCCHHHHHHHHHcCccCCCCeeecCCcccceecCCcchHHHHHhhcCCCC
Q psy5943          39 EDEEKEWYYGTS-EQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGG  105 (133)
Q Consensus        39 ~~~~~~Wyy~~~-g~q~GP~s~~eL~~l~~~G~I~~~TlVW~eGm~~W~p~~~v~eL~~~l~~~~pPP  105 (133)
                      ..++..|||.+. |+.+|||+..+|+..+++|-...+-.||+.|-.++.++.    |..++...+|||
T Consensus        14 ~pe~~~W~Y~D~~g~~qGPfs~~~M~~W~~~GyF~~~l~Vrr~g~~~~~~~~----L~d~l~~~~~~p   77 (78)
T d1wh2a_          14 DKEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESAVL----LTDVLRLSGPSS   77 (78)
T ss_dssp             CSSSCCEEEECTTSCEEEEECHHHHHHHHTTTSSCSCCEEEETTSCTTSCEE----HHHHHHHSSCSC
T ss_pred             CCcceEEEEECCCCCCcCCcCHHHHHHHHHCCCCCCCeEEEECCCCCCccEE----HHHHHhccCCCC
Confidence            456778999986 699999999999999999999999999999988886653    666665556554

>d1syxb1 d.76.1.1 (B:25-86) GYF domain from cd2bp2 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: GYF/BRK domain-like
superfamily: GYF domain
family: GYF domain
domain: GYF domain from cd2bp2 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00011  Score=46.08  Aligned_cols=51  Identities=16%  Similarity=0.210  Sum_probs=42.6

Q ss_pred             CcceEEe----cCCeeeCCCCHHHHHHHHHcCccCCCCeeecCCcc--cceecCCcc
Q psy5943          42 EKEWYYG----TSEQSKGPVTFHQIKHLWSTGELNPKTKVWAHGME--SWKSLHQVP   92 (133)
Q Consensus        42 ~~~Wyy~----~~g~q~GP~s~~eL~~l~~~G~I~~~TlVW~eGm~--~W~p~~~v~   92 (133)
                      +..|+|.    .+|+.+|||+-++|+...++|-...+-.|++.|.+  .|-....|.
T Consensus         1 e~~WeYkw~~d~~g~iqGPf~~~~M~~W~~~GyF~~~l~vRr~~~~~~~F~~~~rid   57 (62)
T d1syxb1           1 DVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRID   57 (62)
T ss_dssp             CCEEEEESSSSSSSCCEEEEEHHHHHHHHHTTSCTTCCEEEESSSTTCCCEEGGGCC
T ss_pred             CcEEEEecccCCCCCCcCCcCHHHHHHHHHCCCCCCCceEEeCCCCCCCcccccccc
Confidence            3579994    34689999999999999999999999999999975  376666553