Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 137
cd03302 436
cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate
1e-57 cd01595 381
cd01595, Adenylsuccinate_lyase_like, Adenylsuccina
1e-38 COG0015 438
COG0015, PurB, Adenylosuccinate lyase [Nucleotide
2e-31 TIGR00928 435
TIGR00928, purB, adenylosuccinate lyase
5e-28 cd01334 325
cd01334, Lyase_I, Lyase class I family; a group of
5e-25 cd01360 387
cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate
5e-18 PRK08540 449
PRK08540, PRK08540, adenylosuccinate lyase; Review
4e-16 PRK06390 451
PRK06390, PRK06390, adenylosuccinate lyase; Provis
1e-13 cd01594 231
cd01594, Lyase_I_like, Lyase class I_like superfam
5e-11 cd01597 437
cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muco
3e-10 PRK07492 435
PRK07492, PRK07492, adenylosuccinate lyase; Provis
1e-07 TIGR02426 338
TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-mucona
3e-06 PRK08470 442
PRK08470, PRK08470, adenylosuccinate lyase; Provis
1e-05 cd01598 425
cd01598, PurB, PurB_like adenylosuccinases (adenyl
1e-05 PRK07380 431
PRK07380, PRK07380, adenylosuccinate lyase; Provis
1e-05 PRK09053 452
PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cyc
1e-04 PRK09285 456
PRK09285, PRK09285, adenylosuccinate lyase; Provis
0.002 PLN02848 458
PLN02848, PLN02848, adenylosuccinate lyase
0.003
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2
Back Hide alignment and domain information
Score = 184 bits (468), Expect = 1e-57
Identities = 70/110 (63%), Positives = 86/110 (78%)
Query: 28 QELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGA 87
+ELGL+I+ +QIEE+K N+ +D + AAAEEK RHDVMAHVH + C A+ IIHLGA
Sbjct: 35 KELGLDISDEQIEEMKANVENIDFEIAAAEEKKLRHDVMAHVHAFGLLCPAAAGIIHLGA 94
Query: 88 TSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
TSC+V DNTDLIQIRDA D+++PKLA I LA FA ++KDLPTLGFTH
Sbjct: 95 TSCFVTDNTDLIQIRDALDLILPKLAAVIDRLAEFALEYKDLPTLGFTHY 144
This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 436
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like
Back Show alignment and domain information
Score = 133 bits (337), Expect = 1e-38
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 5/130 (3%)
Query: 12 GRINKVIKVYSILFCSQ-ELGLNITRDQIEELKDNMM--KLDLDRAAAEEKLTRHDVMAH 68
++ + V + L +Q ELGL I ++ EE++ ++D +R A EK T HDV+A
Sbjct: 9 NKLRTWLDVEAALAEAQAELGL-IPKEAAEEIRAAADVFEIDAERIAEIEKETGHDVIAF 67
Query: 69 VHVYAEQCRK-ASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFK 127
V+ AE+C + A +H GATS + D +Q+RDA DI++P L I LA A + K
Sbjct: 68 VYALAEKCGEDAGEYVHFGATSQDINDTALALQLRDALDIILPDLDALIDALAKLALEHK 127
Query: 128 DLPTLGFTHL 137
D P LG TH
Sbjct: 128 DTPMLGRTHG 137
This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting. Length = 381
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism]
Back Show alignment and domain information
Score = 115 bits (290), Expect = 2e-31
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Query: 12 GRINKVIKVYSILFCSQ-ELGLNITRDQIEEL--KDNMMKLDLDRAAAEEKLTRHDVMAH 68
++ +KV + L +Q ELG+ I + E+ + DL+R E T HDV A
Sbjct: 18 AKLRAWLKVEAALARAQAELGV-IPAEAAAEIDAAAAFAEFDLERIKEIEAETGHDVKAL 76
Query: 69 VHVYAEQC-RKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFK 127
V AE+ +AS +H GATS + D +Q+++A D+++P L I LA A + K
Sbjct: 77 VRALAEKVGEEASEYVHFGATSQDIIDTALALQLKEALDLILPDLKRLIEALAELALEHK 136
Query: 128 DLPTLGFTHL 137
D P LG TH
Sbjct: 137 DTPMLGRTHG 146
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase
Back Show alignment and domain information
Score = 105 bits (265), Expect = 5e-28
Identities = 43/110 (39%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 29 ELGLNITRDQIEEL--KDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLG 86
ELG+ I + ++E+ K N +DL R E +TRHDV A V+ E+C IH G
Sbjct: 36 ELGV-IPAEAVKEIRAKANFTDVDLARIKEIEAVTRHDVKAVVYALKEKCGAEGEFIHFG 94
Query: 87 ATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
ATS + D + +RDA +I++PKL I L A ++KD LG TH
Sbjct: 95 ATSNDIVDTALALLLRDALEIILPKLKQLIDRLKDLAVEYKDTVMLGRTH 144
This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 435
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions
Back Show alignment and domain information
Score = 96.4 bits (241), Expect = 5e-25
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 29 ELGLNITRDQIEELKDNMMKLDLDRAAAE---EKLTRHDVMAHVHVYAEQCRKASS-IIH 84
ELGL + ++ E + + ++ AA + E HDVMA V AE+ + + +H
Sbjct: 17 ELGL-LPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEEVLAERAGELNGGYVH 75
Query: 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
G +S + D + +RDA DIL+P L I LA A + KD G THL
Sbjct: 76 TGRSSNDIVDTALRLALRDALDILLPALKALIDALAAKAEEHKDTVMPGRTHL 128
The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Length = 325
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1
Back Show alignment and domain information
Score = 78.4 bits (194), Expect = 5e-18
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 29 ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGAT 88
+LG+ I + EE++ K D++R E T+HDV+A V AE C +A IH G T
Sbjct: 33 KLGV-IPAEAAEEIRKKA-KFDVERVKEIEAETKHDVIAFVTAIAEYCGEAGRYIHFGLT 90
Query: 89 SCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
S V D +Q+R+A DI++ L + L A + KD +G TH
Sbjct: 91 SSDVVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRTH 138
This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). Length = 387
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed
Back Show alignment and domain information
Score = 73.1 bits (180), Expect = 4e-16
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Query: 13 RINKVIKVYSILFCSQ-ELGLNITRDQIEEL--KDNMMKLDLDRAAAEEKLTRHDVMAHV 69
++ K++ V + L ++ ELGL I + EE+ K + + L+R E HD+MA V
Sbjct: 24 KLQKMLDVEAALARAEAELGL-IPEEAAEEINRKASTKYVKLERVKEIEAEIHHDIMAVV 82
Query: 70 HVYAEQCR-KASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKD 128
+E C A +H GATS + D +Q++D+ +IL KL L A + K+
Sbjct: 83 KALSEVCEGDAGEYVHFGATSNDIIDTATALQLKDSLEILEEKLKKLRGVLLKKAEEHKN 142
Query: 129 LPTLGFTH 136
+G TH
Sbjct: 143 TVCIGRTH 150
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Score = 66.1 bits (161), Expect = 1e-13
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 13 RINKVIKVYSILFCSQ-ELGLNITRDQIEELK----DNMMKLDLDRAAAEEKLTRHDVMA 67
R+ ++KV + + ++ E G+ I RD ++K N ++L+ R E +HDVMA
Sbjct: 24 RLRYMLKVEAAIAKAEYEYGI-IPRDAFLDIKNAVDSNSVRLE--RVREIESEIKHDVMA 80
Query: 68 HVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFK 127
V +EQC + +H G TS + D +QI D I+ + + L +++K
Sbjct: 81 LVEALSEQCSAGKNYVHFGVTSNDINDTATALQIHDFVSIIKDDIKNLMETLIKLIDEYK 140
Query: 128 DLPTLGFTH 136
D P +G TH
Sbjct: 141 DSPMMGRTH 149
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions
Back Show alignment and domain information
Score = 57.6 bits (140), Expect = 5e-11
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 49 LDLDRAAAEEKLTRHDVMAHVHVYAEQC------RKASSIIHLGATSCYVGDNTDLIQIR 102
L ++ AAA V A + S+++H G +S +G + +R
Sbjct: 5 LLVELAAAL--------ALVEEVLAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALR 56
Query: 103 DAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
DA D L+P L I LA A K G THL
Sbjct: 57 DALDDLLPLLKALIDALALKAEAHKGTVMPGRTHL 91
Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respectively. Length = 231
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like
Back Show alignment and domain information
Score = 56.1 bits (136), Expect = 3e-10
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 48 KLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASS-IIHLGATSCYVGDNTDLIQIRDAFD 106
+LDL+ A T H + V C A+ +H GAT+ + D ++Q+RDA D
Sbjct: 57 RLDLEALAEATARTGHPAIPLVKQLTAACGDAAGEYVHWGATTQDIIDTALVLQLRDALD 116
Query: 107 ILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
+L L + LA A +D P +G THL
Sbjct: 117 LLERDLDALLDALARLAATHRDTPMVGRTHL 147
This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms. Length = 437
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Score = 48.4 bits (116), Expect = 1e-07
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 29 ELGLNITRDQIEEL--KDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLG 86
ELG I ++ E + K + D+ R E +T+HDV+A + AE + +H G
Sbjct: 36 ELG-VIPKEAAETIWEKGKDAEFDVARIDEIEAVTKHDVIAFLTHLAEFVGPDARFVHQG 94
Query: 87 ATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
TS V D +Q+ A D+L+ L ++ L A + KD PT+G +H
Sbjct: 95 MTSSDVLDTCLNVQLVRAADLLLADLDRVLAALKKRAFEHKDTPTIGRSH 144
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate cycloisomerase
Back Show alignment and domain information
Score = 44.7 bits (106), Expect = 3e-06
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 78 KASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
+A+ +H GATS V D + ++Q+RDA D+L+ L LA A + +D P G T L
Sbjct: 88 EAARYVHRGATSQDVIDTSLMLQLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLL 147
Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate [Energy metabolism, Other]. Length = 338
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Score = 43.2 bits (102), Expect = 1e-05
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 30 LGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGATS 89
LGL I E++ N K D+ R EK T+HD++A + +E + S +H G TS
Sbjct: 37 LGL-IPDSDCEKICKNA-KFDIARIDEIEKTTKHDLIAFLTSVSESLGEESRFVHYGMTS 94
Query: 90 CYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
D +Q+RD+ ++I + + + A + KD +G +H
Sbjct: 95 SDCIDTAVALQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLMVGRSH 141
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase, ASL)
Back Show alignment and domain information
Score = 43.0 bits (102), Expect = 1e-05
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 34 ITRDQIEELK---DNMMKLDLDRAAAEEKLTRHDVMA-------HVHVYAEQCRKASSII 83
+T+++++ L+ +N + D R E T HDV A +K I
Sbjct: 37 LTKEELKFLRAIIENFSEEDALRIKEIEATTNHDVKAVEYFLKEKFETL-GLLKKIKEFI 95
Query: 84 HLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTH 136
H TS + + + I++A ++++P L I L A ++ D+P L TH
Sbjct: 96 HFACTSEDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEYADVPMLSRTH 149
This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). Length = 425
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Score = 42.7 bits (101), Expect = 1e-05
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 29 ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGAT 88
ELG I ++ +EE+K D R E RHDV+A + E A IHLG T
Sbjct: 36 ELG-KIPQEAVEEIKAKA-NFDPQRILEIEAEVRHDVIAFLTNVNEYVGDAGRYIHLGMT 93
Query: 89 SCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTH 136
S V D +Q+ + D+L+ +L I + + A + ++ +G +H
Sbjct: 94 SSDVLDTGLALQLVASLDLLLEELEDLIQAIRYQAREHRNTVMIGRSH 141
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Back Show alignment and domain information
Score = 40.4 bits (95), Expect = 1e-04
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 79 ASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
A+ +H GATS + D ++Q+RDA D+L P L LA A + + P +G T L
Sbjct: 98 AARYVHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCDALATLAARHRATPMVGRTWL 156
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Score = 36.3 bits (85), Expect = 0.002
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 50 DLDRAAAEEKLTRHDVMA-------HVHVYAEQCRKASSIIHLGATSCYVGDNTDL---I 99
D R E+ T HDV A + E S IH TS D +L +
Sbjct: 78 DAARIKEIERTTNHDVKAVEYFLKEKLAGLPE-LEAVSEFIHFACTS---EDINNLSHAL 133
Query: 100 QIRDAFD-ILIPKLATCISHLAFFANKFKDLPTLGFTH 136
+++A + +L+P L I L A+++ D+P L TH
Sbjct: 134 MLKEAREEVLLPALRELIDALKELAHEYADVPMLSRTH 171
>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase
Back Show alignment and domain information
Score = 36.3 bits (84), Expect = 0.003
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 58 EKLTRHDVMAHVHVYAEQCR------KASSIIHLGATSCYVGDNTDLIQIRDAFD-ILIP 110
E++T HDV A + ++C+ K H TS + + + + +++ + +++P
Sbjct: 89 ERVTNHDVKAVEYFLKQKCKSHPELAKVLEFFHFACTSEDINNLSHALMLKEGVNSVVLP 148
Query: 111 KLATCISHLAFFANKFKDLPTLGFTH 136
+ I ++ A++F +P L TH
Sbjct: 149 TMDEIIKAISSLAHEFAYVPMLSRTH 174
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
137
COG0015 438
PurB Adenylosuccinate lyase [Nucleotide transport
100.0 PRK07492 435
adenylosuccinate lyase; Provisional
100.0 PRK07380 431
adenylosuccinate lyase; Provisional
100.0 PRK08470 442
adenylosuccinate lyase; Provisional
100.0 cd03302 436
Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL
100.0 cd01360 387
Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL
100.0 cd01595 381
Adenylsuccinate_lyase_like Adenylsuccinate lyase (
100.0 PRK06390 451
adenylosuccinate lyase; Provisional
100.0 PRK08540 449
adenylosuccinate lyase; Reviewed
100.0 cd01598 425
PurB PurB_like adenylosuccinases (adenylsuccinate
100.0 PRK05975 351
3-carboxy-cis,cis-muconate cycloisomerase; Provisi
100.0 TIGR02426 338
protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom
100.0 TIGR00928 435
purB adenylosuccinate lyase. This family consists
100.0 cd01597 437
pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo
100.0 PRK09053 452
3-carboxy-cis,cis-muconate cycloisomerase; Provisi
100.0 PLN02848 458
adenylosuccinate lyase
100.0 PRK09285 456
adenylosuccinate lyase; Provisional
100.0 PRK06705 502
argininosuccinate lyase; Provisional
99.97 cd01334 325
Lyase_I Lyase class I family; a group of proteins
99.97 cd01359 435
Argininosuccinate_lyase Argininosuccinate lyase (a
99.96 PF00206 312
Lyase_1: Lyase; InterPro: IPR022761 This entry rep
99.96 PRK02186 887
argininosuccinate lyase; Provisional
99.96 cd01357 450
Aspartase Aspartase. This subgroup contains Escher
99.96 PRK12308 614
bifunctional argininosuccinate lyase/N-acetylgluta
99.96 PRK04833 455
argininosuccinate lyase; Provisional
99.96 TIGR00839 468
aspA aspartate ammonia-lyase. Fumarate hydratase s
99.95 PRK12273 472
aspA aspartate ammonia-lyase; Provisional
99.95 PRK13353 473
aspartate ammonia-lyase; Provisional
99.95 PRK00485 464
fumC fumarate hydratase; Reviewed
99.95 COG0165 459
ArgH Argininosuccinate lyase [Amino acid transport
99.95 cd01362 455
Fumarase_classII Class II fumarases. This subgroup
99.94 TIGR00979 458
fumC_II fumarate hydratase, class II. Putative fum
99.94 TIGR00838 455
argH argininosuccinate lyase. This model describes
99.94 PLN02646 474
argininosuccinate lyase
99.94 PRK00855 459
argininosuccinate lyase; Provisional
99.93 cd01596 450
Aspartase_like aspartase (L-aspartate ammonia-lyas
99.93 PRK12425 464
fumarate hydratase; Provisional
99.91 PRK06389 434
argininosuccinate lyase; Provisional
99.91 PLN00134 458
fumarate hydratase; Provisional
99.91 KOG1316|consensus 464
99.9 PRK14515 479
aspartate ammonia-lyase; Provisional
99.89 KOG2700|consensus 481
99.8 cd01594 231
Lyase_I_like Lyase class I_like superfamily: conta
99.49 COG0114 462
FumC Fumarase [Energy production and conversion]
99.44 COG1027 471
AspA Aspartate ammonia-lyase [Amino acid transport
99.4 KOG1317|consensus 487
98.24 PF10925 59
DUF2680: Protein of unknown function (DUF2680); In
85.95
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Back Hide alignment and domain information
Probab=100.00 E-value=1.2e-36 Score=249.66 Aligned_cols=131 Identities=34% Similarity=0.446 Sum_probs=127.1
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhc--ccCCHHHHHhHHhhhcCchHHHHHHHHHHcC-cccC
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNM--MKLDLDRAAAEEKLTRHDVMAHVHVYAEQCR-KASS 81 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l--~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g-~~~~ 81 (137)
.+||++++++.|++|| |++++++++|+ ||+++++.|.+.+ ..+|++++.+.+++++|||+++++.|.+.+| +.++
T Consensus 12 ~ifS~~~~~~~~l~vE~ala~A~aelG~-Ip~~a~~~I~~~~~~~~~d~~~i~eie~~t~HdV~a~v~~l~e~~~~~~~~ 90 (438)
T COG0015 12 AIFSEEAKLRAWLKVEAALARAQAELGV-IPAEAAAEIDAAAAFAEFDLERIKEIEAETGHDVKALVRALAEKVGEEASE 90 (438)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhcccccCHHHHHHHHHHhCCCcHHHHHHHHHhcCccccc
Confidence 5899999999999999 99999999999 9999999999886 5789999999999999999999999999999 6799
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 82 IIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 82 ~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|||+|+|||||+||+++|++|++++++.++|.++++.|.++|.+|++|||+|||||
T Consensus 91 ~VH~GaTS~DI~Dta~~L~lk~a~~ii~~~l~~l~~~L~~~A~~~k~t~m~GRTHg 146 (438)
T COG0015 91 YVHFGATSQDIIDTALALQLKEALDLILPDLKRLIEALAELALEHKDTPMLGRTHG 146 (438)
T ss_pred ceecccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecccccC
Confidence 99999999999999999999999999999999999999999999999999999997
>PRK07492 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=3.6e-36 Score=248.47 Aligned_cols=131 Identities=26% Similarity=0.316 Sum_probs=126.4
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhc--ccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNM--MKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSI 82 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l--~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~ 82 (137)
.+|||+++++.|++|| |++++++++|+ ||+++++.|.+.+ ..+|++++.+.+..++|||+++++.|++++|+.++|
T Consensus 12 ~i~s~~~~~~~~l~vE~ala~a~~~~g~-ip~~aa~~i~~~~~~~~~d~~~~~~~~~~~~h~v~a~~~~L~~~~g~~~~~ 90 (435)
T PRK07492 12 AIWEPETKFRIWFEIEAHACEAQAELGV-IPKEAAETIWEKGKDAEFDVARIDEIEAVTKHDVIAFLTHLAEFVGPDARF 90 (435)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhCcccCCCHHHHHHHHHHhCCChHHHHHHHHHHhhHhhhh
Confidence 5899999999999999 99999999999 9999999999876 248999999999999999999999999999988999
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 83 IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 83 lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|+|||||+||+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 91 vH~G~Ts~Di~dTa~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 145 (435)
T PRK07492 91 VHQGMTSSDVLDTCLNVQLVRAADLLLADLDRVLAALKKRAFEHKDTPTIGRSHG 145 (435)
T ss_pred hcCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeeccCC
Confidence 9999999999999999999999999999999999999999999999999999997
>PRK07380 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=3.3e-36 Score=248.43 Aligned_cols=130 Identities=26% Similarity=0.363 Sum_probs=126.4
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH 84 (137)
.+|||+++++.|++|| |++++++++|+ ||+++++.|.+.+ ++|++++.+.+..++|||+++++.|++++|+.++|||
T Consensus 12 ~~fs~~~~~~~~l~vE~ala~a~~~~g~-ip~~aa~~i~~~~-~~d~~~i~~~~~~~~h~v~a~v~~l~~~~g~~~~~vH 89 (431)
T PRK07380 12 NIWTDTAKFQTWLDVEIAVCEAQAELGK-IPQEAVEEIKAKA-NFDPQRILEIEAEVRHDVIAFLTNVNEYVGDAGRYIH 89 (431)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhcc-CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhcccc
Confidence 5799999999999999 99999999999 9999999998876 5999999999999999999999999999998899999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|||||+||+++|++|+++..+.+.|..++++|.++|.+|++||||||||+
T Consensus 90 ~G~Ts~Di~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~ 142 (431)
T PRK07380 90 LGMTSSDVLDTGLALQLVASLDLLLEELEDLIQAIRYQAREHRNTVMIGRSHG 142 (431)
T ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeechhcC
Confidence 99999999999999999999999999999999999999999999999999997
>PRK08470 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=1e-35 Score=246.22 Aligned_cols=130 Identities=24% Similarity=0.322 Sum_probs=125.2
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH 84 (137)
.+|||+++++.|++|| ||+++|+++|+ ||+++++.|.+++. +|++++.+.+..++|||+++++.|.+++|+.++|||
T Consensus 12 ~i~s~~~~~~~~l~ve~A~a~al~~~G~-Ip~~~a~~I~~~~~-~d~~~~~~~~~~~~~dv~~~v~~L~e~~g~~~~~vH 89 (442)
T PRK08470 12 KKWTMQAKYDAWLEVEKAAVKAWNKLGL-IPDSDCEKICKNAK-FDIARIDEIEKTTKHDLIAFLTSVSESLGEESRFVH 89 (442)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhcc-cchHHHHHHHHccCCChHHHHHHHHHHcccccccee
Confidence 5899999999999999 99999999999 99999999999984 788888888888999999999999999998899999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|||||+||+++|++|+++..+.+.|..++++|.++|.+|++||||||||+
T Consensus 90 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~ 142 (442)
T PRK08470 90 YGMTSSDCIDTAVALQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLMVGRSHG 142 (442)
T ss_pred cCCChhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecccCC
Confidence 99999999999999999999999999999999999999999999999999997
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2
Back Show alignment and domain information
Probab=100.00 E-value=8.9e-35 Score=240.32 Aligned_cols=132 Identities=55% Similarity=0.823 Sum_probs=127.4
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH 84 (137)
.+||++++++.|++|| |++++++++|++||+++++.|.+.+.++|++++.+.++.++|||+++++.|++++|+.++|+|
T Consensus 12 ~~fs~~~~~~~~l~~e~ala~a~~~~g~~ip~~~a~~i~~~~~~~d~~~i~~~e~~~~hdv~a~~~~l~~~~~~~~~~vH 91 (436)
T cd03302 12 YIFSPRKKFSTWRKLWLWLAEAEKELGLDISDEQIEEMKANVENIDFEIAAAEEKKLRHDVMAHVHAFGLLCPAAAGIIH 91 (436)
T ss_pred HHcChHHHHHHHHHHHHHHHHhhHHhCCCCCHHHHHHHHHhhhcCCHHHHHHHHHHhCcCchHHHHHHHHHhHhccCeee
Confidence 5899999999999999 999999999976899999999988756899999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+||||++||+++|++|+++..+.+.|..++++|.++|.+|++||||||||+
T Consensus 92 ~G~TS~Di~dta~~L~lr~a~~~l~~~L~~l~~~L~~~A~~~~dt~m~GrTH~ 144 (436)
T cd03302 92 LGATSCFVTDNTDLIQIRDALDLILPKLAAVIDRLAEFALEYKDLPTLGFTHY 144 (436)
T ss_pred eCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeccccC
Confidence 99999999999999999999999999999999999999999999999999997
This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1
Back Show alignment and domain information
Probab=100.00 E-value=1.1e-34 Score=236.70 Aligned_cols=130 Identities=32% Similarity=0.413 Sum_probs=124.1
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH 84 (137)
.+|||+++++.|++|| ||+++|+++|+ ||++++++|.++++ .+.+++.+.+...+||++++|+.|++++|+.++|+|
T Consensus 9 ~~fs~~~~~~~~l~ve~A~a~~l~~~Gl-ip~~~a~~I~~~l~-~~~~~~~~~~~~~~~dv~~~e~~L~~~~g~~~~~lH 86 (387)
T cd01360 9 KIWSEENKFRKWLEVEAAVCEAWAKLGV-IPAEAAEEIRKKAK-FDVERVKEIEAETKHDVIAFVTAIAEYCGEAGRYIH 86 (387)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHhh-cCHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhee
Confidence 5899999999999999 99999999999 99999999999985 567777777778899999999999999998899999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 87 ~G~S~nDi~~ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 139 (387)
T cd01360 87 FGLTSSDVVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRTHG 139 (387)
T ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeehhhcC
Confidence 99999999999999999999999999999999999999999999999999997
This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like
Back Show alignment and domain information
Probab=100.00 E-value=1.1e-34 Score=236.25 Aligned_cols=131 Identities=37% Similarity=0.521 Sum_probs=125.2
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc--CCHHHHHhHHhhhcCchHHHHHHHHHHcCc-ccC
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK--LDLDRAAAEEKLTRHDVMAHVHVYAEQCRK-ASS 81 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~--~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~-~~~ 81 (137)
.+|||+++++.|+++| ||+++|+++|+ ||++++++|.+++.. +|++++.+.+..++||++++|++|++++|+ .++
T Consensus 3 ~~~s~~~~~~~~l~ve~A~a~~l~~~gi-ip~~~a~~i~~~l~~~~~d~~~~~~~~~~~~~~v~~~e~~L~~~~g~~~~~ 81 (381)
T cd01595 3 AIFSEENKLRTWLDVEAALAEAQAELGL-IPKEAAEEIRAAADVFEIDAERIAEIEKETGHDVIAFVYALAEKCGEDAGE 81 (381)
T ss_pred hHhChHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhhhcccCCHHHHHHHHHHhCcCcHHHHHHHHHHhhhHhhh
Confidence 5899999999999999 99999999999 999999999998865 678888777778899999999999999998 799
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 82 IIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 82 ~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+|+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|+|||||||||+
T Consensus 82 ~vH~g~S~nDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~dt~m~grTH~ 137 (381)
T cd01595 82 YVHFGATSQDINDTALALQLRDALDIILPDLDALIDALAKLALEHKDTPMLGRTHG 137 (381)
T ss_pred HeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999997
This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
>PRK06390 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=2.3e-34 Score=238.74 Aligned_cols=131 Identities=29% Similarity=0.451 Sum_probs=124.7
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcc--cCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMM--KLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSI 82 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~--~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~ 82 (137)
.+|||+++++.|+++| ||++||+++|+ ||+++++.|.+++. .+|++++.+.+.+++||++++++.|++++|+.++|
T Consensus 17 ~i~s~~~~~~~~l~ve~A~a~al~~~Gi-ip~~~a~~I~~~l~~~~~d~~~~~~~~~~~~~dv~~~~~~L~~~~g~~~~~ 95 (451)
T PRK06390 17 YIFDDENRLRYMLKVEAAIAKAEYEYGI-IPRDAFLDIKNAVDSNSVRLERVREIESEIKHDVMALVEALSEQCSAGKNY 95 (451)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhcccccCCHHHHHHHHHHhCCCcHHHHHHHHHHhhhhhhh
Confidence 5899999999999999 99999999999 99999999999884 36777777778888999999999999999988999
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 83 IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 83 lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 96 iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~ 150 (451)
T PRK06390 96 VHFGVTSNDINDTATALQIHDFVSIIKDDIKNLMETLIKLIDEYKDSPMMGRTHG 150 (451)
T ss_pred eecCccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhCC
Confidence 9999999999999999999999999999999999999999999999999999997
>PRK08540 adenylosuccinate lyase; Reviewed
Back Show alignment and domain information
Probab=100.00 E-value=4.1e-34 Score=237.08 Aligned_cols=131 Identities=30% Similarity=0.412 Sum_probs=125.4
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc--CCHHHHHhHHhhhcCchHHHHHHHHHHcC-cccC
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK--LDLDRAAAEEKLTRHDVMAHVHVYAEQCR-KASS 81 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~--~~~~~~~~~~~~~~hdv~a~~~~l~~~~g-~~~~ 81 (137)
.+|||+++++.|++|| ||+++|.++|+ ||+++++.|.+++.. +|.+.+...+...+||++++|+.|++++| +.++
T Consensus 17 ~~~s~~~~~~~~l~ve~A~a~~l~~~Gi-ip~~~a~~I~~~l~~~~i~~~~~~~~~~~~~~~v~~~e~~L~~~~~~~~~~ 95 (449)
T PRK08540 17 RVWSEENKLQKMLDVEAALARAEAELGL-IPEEAAEEINRKASTKYVKLERVKEIEAEIHHDIMAVVKALSEVCEGDAGE 95 (449)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhcccccCCHHHHHHHHHHhCCCcHHHHHHHHHHhhhhhhc
Confidence 5899999999999999 99999999999 999999999999976 88888877778889999999999999995 6799
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 82 IIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 82 ~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+|+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+
T Consensus 96 ~vH~g~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~m~grTH~ 151 (449)
T PRK08540 96 YVHFGATSNDIIDTATALQLKDSLEILEEKLKKLRGVLLKKAEEHKNTVCIGRTHG 151 (449)
T ss_pred ceecCccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999997
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL)
Back Show alignment and domain information
Probab=100.00 E-value=3.6e-34 Score=235.80 Aligned_cols=131 Identities=25% Similarity=0.298 Sum_probs=123.5
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCH------HHHHHHHHhccc---CCHHHHHhHHhhhcCchHHHHHHHHHH
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITR------DQIEELKDNMMK---LDLDRAAAEEKLTRHDVMAHVHVYAEQ 75 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~------~~a~~I~~~l~~---~~~~~~~~~~~~~~hdv~a~~~~l~~~ 75 (137)
.+|||+++++.|++|| |++++|+++|+ ||+ ++++.|.+.+.. +|++++.+.+..++|||+++++.|+++
T Consensus 3 ~~~s~~~~~~~~l~vE~ala~a~a~~g~-Ip~~~~~~~~aa~~i~~~~~~~~~~d~~~~~~~~~~~~hdv~al~~~l~~~ 81 (425)
T cd01598 3 PYFSEYALIKYRVQVEVEWLIALSNLEE-IPEVPPLTKEELKFLRAIIENFSEEDALRIKEIEATTNHDVKAVEYFLKEK 81 (425)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHhhcCccCHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 5799999999999999 99999999999 999 999999988743 789999999999999999999999999
Q ss_pred cC------cccCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CR------KASSIIHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g------~~~~~lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+| +.++|+|+|+|||||+||+++|++|+++ ..+.+.|..++++|.++|++|++||||||||+
T Consensus 82 ~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~dt~m~GrTH~ 150 (425)
T cd01598 82 FETLGLLKKIKEFIHFACTSEDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEYADVPMLSRTHG 150 (425)
T ss_pred hcccccchhhhhHhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCC
Confidence 97 3578999999999999999999999999 56789999999999999999999999999997
This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=9.7e-34 Score=228.61 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=123.6
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc--CCHHHHHhHHhhhcCchHHHHHHHHHHcCc-ccC
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK--LDLDRAAAEEKLTRHDVMAHVHVYAEQCRK-ASS 81 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~--~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~-~~~ 81 (137)
.+|||+++++.|++|| |+++++.++|+ ||+++++.|.+++.. +|..++.+.+..++|++.++++.|++++|+ .++
T Consensus 22 ~~~s~~~~i~a~l~vE~A~a~a~~~~G~-Ip~~~a~~I~~a~~~~~~d~~~~~~~~~~~g~~v~~~v~~l~~~~g~~~~~ 100 (351)
T PRK05975 22 ALFSAEADIAAMLAFEAALAEAEAEHGI-IPAEAAERIAAACETFEPDLAALRHATARDGVVVPALVRQLRAAVGEEAAA 100 (351)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHhccCCCCHHHHhhHHHhcCCcHHHHHHHHHHHhCchhhC
Confidence 5799999999999999 99999999999 999999999999865 467777777888899999999999999974 689
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 82 IIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 82 ~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|||+|+||||++||+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 101 ~vH~G~TsnDi~dTa~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~grTH~ 156 (351)
T PRK05975 101 HVHFGATSQDVIDTSLMLRLKAASEILAARLGALIARLDALEATFGQNALMGHTRM 156 (351)
T ss_pred cccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecccCC
Confidence 99999999999999999999999999999999999999999999999999999997
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase
Back Show alignment and domain information
Probab=100.00 E-value=2.6e-33 Score=225.19 Aligned_cols=131 Identities=24% Similarity=0.316 Sum_probs=123.5
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc--CCHHHHHhHHhhhcCchHHHHHHHHHHcCc-ccC
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK--LDLDRAAAEEKLTRHDVMAHVHVYAEQCRK-ASS 81 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~--~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~-~~~ 81 (137)
.+|||+++++.|++|| ||+.+|.++|+ ||+++++.|.+++++ +|+..+.+.+..++|+++++|+.|++++|+ .++
T Consensus 13 ~i~sd~~~i~~~~~ve~A~a~al~~~Gi-i~~~~a~~I~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~g~ 91 (338)
T TIGR02426 13 ELFSDRAFLRAMLDFEAALARAQADAGL-IPAEAAAAIEAACAAAAPDLEALAHAAATAGNPVIPLVKALRKAVAGEAAR 91 (338)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhhccCCCCHHHHHhHHHhcCCcHHHHHHHHHHHhCccccC
Confidence 5799999999999999 99999999999 999999999999975 466667777778899999999999999985 689
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 82 IIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 82 ~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+|+|+||||+++|+++|++|+++..+.+.+..++++|.++|++|+++|||||||+
T Consensus 92 ~vH~G~S~nD~~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~grTH~ 147 (338)
T TIGR02426 92 YVHRGATSQDVIDTSLMLQLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLL 147 (338)
T ss_pred cccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecccCC
Confidence 99999999999999999999999999999999999999999999999999999997
Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
>TIGR00928 purB adenylosuccinate lyase
Back Show alignment and domain information
Probab=100.00 E-value=1.9e-33 Score=232.36 Aligned_cols=131 Identities=34% Similarity=0.484 Sum_probs=124.2
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhc--ccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNM--MKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSI 82 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l--~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~ 82 (137)
.+|||+++++.|+++| ||+.+|+++|+ ||+++++.|.+++ +.+|++++.+.+...+||++++|+.|++++|+.++|
T Consensus 12 ~ifs~~~~~~~~l~ve~A~a~~l~~~gi-ip~~~a~~i~~~~~~~~~d~~~l~~~~~~~~~~v~~~e~~l~~~~g~~~~~ 90 (435)
T TIGR00928 12 AIWSEENKFKTWLDVEVALLRALAELGV-IPAEAVKEIRAKANFTDVDLARIKEIEAVTRHDVKAVVYALKEKCGAEGEF 90 (435)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHhhCCCCccCHHHHHHHHHHHCcChHHHHHHHHHHhhhhhhh
Confidence 5899999999999999 99999999999 9999999999873 446788887777889999999999999999988999
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 83 IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 83 lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 91 vh~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 145 (435)
T TIGR00928 91 IHFGATSNDIVDTALALLLRDALEIILPKLKQLIDRLKDLAVEYKDTVMLGRTHG 145 (435)
T ss_pred eeecccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHhHHhcC
Confidence 9999999999999999999999999999999999999999999999999999996
This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like
Back Show alignment and domain information
Probab=100.00 E-value=5e-33 Score=229.87 Aligned_cols=132 Identities=29% Similarity=0.418 Sum_probs=124.4
Q ss_pred CcccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc--CCHHHHHhHHhhhcCchHHHHHHHHHHcCc-cc
Q psy6016 5 GTFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK--LDLDRAAAEEKLTRHDVMAHVHVYAEQCRK-AS 80 (137)
Q Consensus 5 ~~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~--~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~-~~ 80 (137)
+.+||++++++.|+.|| ||++||.++|+ ||+++++.|.+++.. .+++.+...+.+++|+|++++++|++++|+ .|
T Consensus 12 ~~~~s~~~~i~~~~~ve~A~a~~l~~~Gi-i~~~~a~~I~~al~~~~~~~~~~~~~~~~~~~~v~a~e~~l~e~~g~~~g 90 (437)
T cd01597 12 REIFSDENRVQAMLDVEAALARAQAELGV-IPKEAAAEIAAAADVERLDLEALAEATARTGHPAIPLVKQLTAACGDAAG 90 (437)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhccccCCCHHHHHHHHHHhCCCcHHHHHHHHHHcCcccc
Confidence 36899999999999999 99999999999 999999999998854 567777777888999999999999999996 49
Q ss_pred CccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 81 SIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 81 ~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|+++|||||||+
T Consensus 91 ~~lH~grSrnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~grTH~ 147 (437)
T cd01597 91 EYVHWGATTQDIIDTALVLQLRDALDLLERDLDALLDALARLAATHRDTPMVGRTHL 147 (437)
T ss_pred CeeecCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeehhhcC
Confidence 999999999999999999999999999999999999999999999999999999996
This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=1.1e-32 Score=228.84 Aligned_cols=131 Identities=25% Similarity=0.353 Sum_probs=125.9
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhc--ccCCHHHHHhHHhhhcCchHHHHHHHHHHcC----c
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNM--MKLDLDRAAAEEKLTRHDVMAHVHVYAEQCR----K 78 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l--~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g----~ 78 (137)
.+|||+++++.|++|| |+|++++++|+ ||++.++.|.+++ +.+|++.+..++..++|+++++++.|.+.+| +
T Consensus 19 ~i~s~~~~i~a~l~ve~A~A~a~~~~G~-ip~~~a~~I~~a~~~~~~d~~~~~~~~~~~~~~~~~lv~~l~~~~~~~~~~ 97 (452)
T PRK09053 19 AIFSDRATVQRMLDFEAALARAEAACGV-IPAAAVAPIEAACDAERLDLDALAQAAALAGNLAIPLVKQLTAQVAARDAE 97 (452)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhccccCCCHHHHHHHHhhcCCchHHHHHHHHHHhcccCcc
Confidence 5799999999999999 99999999999 9999999999998 4589999999999999999999999999996 3
Q ss_pred ccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 79 ASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 79 ~~~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.++|||+|+||||++||+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 98 ~~~~vH~G~SsnDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~GrTH~ 156 (452)
T PRK09053 98 AARYVHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCDALATLAARHRATPMVGRTWL 156 (452)
T ss_pred hhccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeehhccC
Confidence 58999999999999999999999999999999999999999999999999999999997
>PLN02848 adenylosuccinate lyase
Back Show alignment and domain information
Probab=100.00 E-value=7.7e-33 Score=229.70 Aligned_cols=131 Identities=19% Similarity=0.268 Sum_probs=123.0
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCC---CH---HHHHHHHHhcccC---CHHHHHhHHhhhcCchHHHHHHHHHH
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNI---TR---DQIEELKDNMMKL---DLDRAAAEEKLTRHDVMAHVHVYAEQ 75 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i---~~---~~a~~I~~~l~~~---~~~~~~~~~~~~~hdv~a~~~~l~~~ 75 (137)
.+||++++++.|++|| |+++++++.|+ | |+ ++++.|.+.+..+ |++++.+.+..++|||+++++.++++
T Consensus 28 ~ifSd~a~~~~~l~vE~ala~a~a~~g~-i~~~P~i~~~aa~~i~~~~~~~~~~d~~~~~~~e~~t~hdv~a~~~~l~~~ 106 (458)
T PLN02848 28 PIFSEFGLIRYRVLVEVKWLLKLSQIPE-VTEVPPFSDEANSFLEGIIAGFSVDDALEVKKIERVTNHDVKAVEYFLKQK 106 (458)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 5899999999999999 99999999999 7 76 9999999887567 78888899999999999999999999
Q ss_pred cC---c---ccCccccCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CR---K---ASSIIHLGATSCYVGDNTDLIQIRDAFDI-LIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g---~---~~~~lH~G~TsnDi~dTa~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+| + .++|+|+|+|||||+||+++|++|+++.. +.+.|..++++|.++|++|+++||+||||+
T Consensus 107 ~~~~~~~~~~~~~vH~G~TsqDi~dTa~~L~lr~a~~~~l~~~L~~l~~aL~~lA~~~~dt~m~GRTH~ 175 (458)
T PLN02848 107 CKSHPELAKVLEFFHFACTSEDINNLSHALMLKEGVNSVVLPTMDEIIKAISSLAHEFAYVPMLSRTHG 175 (458)
T ss_pred hccccchhhhhCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccC
Confidence 96 2 45899999999999999999999999998 999999999999999999999999999997
>PRK09285 adenylosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=100.00 E-value=4.3e-32 Score=225.23 Aligned_cols=133 Identities=24% Similarity=0.234 Sum_probs=120.5
Q ss_pred CcccChHHHHHHHHHHH-HHHHHHhhcCCC--CCHH---HHHHHHHhcccC---CHHHHHhHHhhhcCchHHHHHHHHHH
Q psy6016 5 GTFQSYSGRINKVIKVY-SILFCSQELGLN--ITRD---QIEELKDNMMKL---DLDRAAAEEKLTRHDVMAHVHVYAEQ 75 (137)
Q Consensus 5 ~~~~s~~~~~~~~~~ve-A~a~al~~~Gi~--i~~~---~a~~I~~~l~~~---~~~~~~~~~~~~~hdv~a~~~~l~~~ 75 (137)
..+||++++++.|+++| ||+++|++.|+- ||+. +++.|.+.+..+ |++++.+.+..++|||+++++.|+++
T Consensus 24 ~~~~s~~~~~~~~l~vE~A~a~a~a~~g~~~~ip~~~~~~~~~i~~~~~~~~~~d~~~i~~~e~~~~hdv~a~~~~l~~~ 103 (456)
T PRK09285 24 RPIFSEFGLIRYRVQVEVEWLIALAAHPGIPEVPPFSAEANAFLRAIVENFSEEDAARIKEIERTTNHDVKAVEYFLKEK 103 (456)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhhCcccHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 35799999999999999 999999999861 3444 444487776557 89999999999999999999999999
Q ss_pred cC------cccCccccCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CR------KASSIIHLGATSCYVGDNTDLIQIRDAFDI-LIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g------~~~~~lH~G~TsnDi~dTa~~L~lr~~l~~-l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+| +.++|||+|+|||||+||+++|++|+++.. +.+.|..++++|.++|++|++||||||||+
T Consensus 104 ~~~~~~~~~~~~~vH~G~Ts~Di~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~~t~m~grTH~ 172 (456)
T PRK09285 104 LAGLPELEAVSEFIHFACTSEDINNLSHALMLKEAREEVLLPALRELIDALKELAHEYADVPMLSRTHG 172 (456)
T ss_pred hcccCcchhHHhHccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeceecC
Confidence 97 368999999999999999999999999998 999999999999999999999999999997
>PRK06705 argininosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=99.97 E-value=2.6e-30 Score=216.77 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=113.7
Q ss_pred ccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc---CCHHHHHhHHhhhcCchHHHHHH-HHHHcC-ccc
Q psy6016 7 FQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK---LDLDRAAAEEKLTRHDVMAHVHV-YAEQCR-KAS 80 (137)
Q Consensus 7 ~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~---~~~~~~~~~~~~~~hdv~a~~~~-l~~~~g-~~~ 80 (137)
-|.++++++.|+++| ||+.||.++|| ||+++++.|.+++.+ ++++.+. ....+||++++++. +.+..| +.+
T Consensus 31 ~~~~~~~~~~~l~ve~Aha~~l~~~Gi-Ip~e~a~~I~~al~~~~~~~~~~l~--~~~~~edv~~~ie~~l~~~~G~~~g 107 (502)
T PRK06705 31 NFQRNYLLKDMFQVHKAHIVMLTEENL-MKKEEAKFILHALKKVEEIPEEQLL--YTEQHEDLFFLVEHLISQEAKSDFV 107 (502)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHhhhcccCccc--cCCCCCchHHHHHHHHHHhcCchhh
Confidence 367889999999999 99999999999 999999999998853 3444443 45678999777776 556676 579
Q ss_pred CccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 81 SIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 81 ~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 108 ~~lH~GrSrnD~v~Ta~~L~lr~~l~~l~~~l~~l~~~l~~~A~~~~~t~m~g~TH~ 164 (502)
T PRK06705 108 SNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADHKETIMPAYTHT 164 (502)
T ss_pred ccccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEecccCC
Confidence 999999999999999999999999999999999999999999999999999999996
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions
Back Show alignment and domain information
Probab=99.97 E-value=1.6e-30 Score=207.75 Aligned_cols=123 Identities=31% Similarity=0.395 Sum_probs=111.4
Q ss_pred HHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC--CHHHHH-hHHhhhcCchHHHHHHHHHHcCcc-cCccccCCC
Q psy6016 14 INKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL--DLDRAA-AEEKLTRHDVMAHVHVYAEQCRKA-SSIIHLGAT 88 (137)
Q Consensus 14 ~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~--~~~~~~-~~~~~~~hdv~a~~~~l~~~~g~~-~~~lH~G~T 88 (137)
++.|+.+| ||+++|.++|+ ||+++++.|.+++..+ +..... ..+..++|++++++++|++++|+. ++|+|+|+|
T Consensus 1 ~~~~l~ve~A~a~al~~~Gl-i~~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~~~lH~G~S 79 (325)
T cd01334 1 IRADLQVEKAHAKALAELGL-LPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEEVLAERAGELNGGYVHTGRS 79 (325)
T ss_pred CHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhCccccCeeeCCCCccHHHHHHHHHHHHhccccCCCCccCCC
Confidence 35789999 99999999999 9999999999998553 333332 345667899999999999999987 999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 89 SCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 89 snDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|||++||+++|++|+++..+.+.|.+++++|.++|.+|++||||||||+
T Consensus 80 ~nDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 128 (325)
T cd01334 80 SNDIVDTALRLALRDALDILLPALKALIDALAAKAEEHKDTVMPGRTHL 128 (325)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeeccccc
Confidence 9999999999999999999999999999999999999999999999996
The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL)
Back Show alignment and domain information
Probab=99.96 E-value=1.5e-29 Score=209.01 Aligned_cols=127 Identities=17% Similarity=0.117 Sum_probs=114.4
Q ss_pred ChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC----CHHHHHhHHhhhcCchHHHHHHHHHHcCcccCcc
Q psy6016 9 SYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL----DLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSII 83 (137)
Q Consensus 9 s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~----~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~l 83 (137)
.|++.++.|+.+| ||+.||.++|+ ||+++++.|.+++..+ +.+.+.... ..++++++++++|++++|+.++|+
T Consensus 4 ~d~~~~~~~~~ve~A~a~al~~~Gi-i~~~~a~~I~~al~~~~~~~~~~~~~~~~-~~~~~~~~~e~~l~~~~g~~~~~i 81 (435)
T cd01359 4 FDRRLFEEDIAGSIAHAVMLAEQGI-LTEEEAAKILAGLAKIRAEIEAGAFELDP-EDEDIHMAIERRLIERIGDVGGKL 81 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhhcccCCccCCC-CCCcHHHHHHHHHHHHHHHHHhhh
Confidence 4788899999999 99999999999 9999999999988543 333443323 557777999999999999878999
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 84 HLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 84 H~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 82 H~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~ 135 (435)
T cd01359 82 HTGRSRNDQVATDLRLYLRDALLELLELLLDLQRALLDRAEEHADTIMPGYTHL 135 (435)
T ss_pred hccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEecCCCCC
Confidence 999999999999999999999999999999999999999999999999999996
This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F
Back Show alignment and domain information
Probab=99.96 E-value=3.5e-29 Score=199.14 Aligned_cols=130 Identities=28% Similarity=0.331 Sum_probs=106.8
Q ss_pred ccChHHHHHHHHH-----HH-HHHHHHhhcCCCCCHHHHHHHHHhccc----CCHH---HHHhHHhhhcCchHH-HHHHH
Q psy6016 7 FQSYSGRINKVIK-----VY-SILFCSQELGLNITRDQIEELKDNMMK----LDLD---RAAAEEKLTRHDVMA-HVHVY 72 (137)
Q Consensus 7 ~~s~~~~~~~~~~-----ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~----~~~~---~~~~~~~~~~hdv~a-~~~~l 72 (137)
+||+.++++.|+. +| |+++|+++.|+ ||++.+++|.++++. ++.+ .+...+...++++.. +.+.+
T Consensus 13 ~~s~~~~~~~~l~~~~~~~e~a~~~a~a~~g~-i~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (312)
T PF00206_consen 13 IFSDRARFDFWLAEYDIRVEAALAKALAEAGI-IPKEAADAIVKALEEILEDGDLDDAFELDEIEEDIGHAVEANLNEVL 91 (312)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTS-STHHHHHHHHHHHHHHHHHTCTHGHHHHCSCSSSHHHHHHHHHHHHH
T ss_pred HHCHHHHhCCEeeccHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhhccccccchhhhhccchhHHHHHHHHHh
Confidence 6899999999999 99 99999999999 999999999998854 3333 222223334555544 44445
Q ss_pred HHHcC---cccCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 73 AEQCR---KASSIIHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 73 ~~~~g---~~~~~lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.+.+| +.++|+|+|+||||++||+++|++|+++ ..+.+.|..++++|.++|++|++||||||||+
T Consensus 92 ~e~~~~~~~~~~~vH~G~Ts~Di~~Ta~~l~lr~~~~~~l~~~l~~l~~~L~~~a~~~~~t~~~grTh~ 160 (312)
T PF00206_consen 92 GELLGEPPEAGGWVHYGRTSNDIVDTALRLQLRDALLELLLERLKALIDALAELAEEHKDTPMPGRTHG 160 (312)
T ss_dssp HHHHTHSSGGGGGTTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEETT
T ss_pred hhhhhccccccccccCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCceecccccc
Confidence 55554 6699999999999999999999999999 67999999999999999999999999999997
>PRK02186 argininosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=4.7e-29 Score=220.66 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC---CHHHHHhHHhhhcCchHHHHHHHHHHcC-cccCccc
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL---DLDRAAAEEKLTRHDVMAHVHVYAEQCR-KASSIIH 84 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~---~~~~~~~~~~~~~hdv~a~~~~l~~~~g-~~~~~lH 84 (137)
++++++.|+++| ||+.||+++|+ ||+++++.|.+++.++ +++.+.......+ +++++|+.|++++| +.++|+|
T Consensus 434 ~~~~~~~~~~~~~Ah~~~l~~~gi-i~~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~-~~~~~e~~L~~~~g~~~~~~lH 511 (887)
T PRK02186 434 PLAELDHLAAIDEAHLVMLGDTGI-VAPERARPLLDAHRRLRDAGFAPLLARPAPRG-LYMLYEAYLIERLGEDVGGVLQ 511 (887)
T ss_pred hhhhhHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHhHHhhCcCCCCCcc-hHHHHHHHHHHHhChhhhcccC
Confidence 899999999999 99999999999 9999999999988443 2222221111222 55999999999999 5799999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|||||||++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+
T Consensus 512 ~grSrnD~v~T~~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~g~TH~ 564 (887)
T PRK02186 512 TARSRNDINATTTKLHLREATSRAFDALWRLRRALVFKASANVDCALPIYSQY 564 (887)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCccC
Confidence 99999999999999999999999999999999999999999999999999997
>cd01357 Aspartase Aspartase
Back Show alignment and domain information
Probab=99.96 E-value=1.8e-28 Score=203.51 Aligned_cols=126 Identities=17% Similarity=0.205 Sum_probs=110.4
Q ss_pred ChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC------C---HHHHHhHHhhh----cCchHHHHHHHHH
Q psy6016 9 SYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL------D---LDRAAAEEKLT----RHDVMAHVHVYAE 74 (137)
Q Consensus 9 s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~------~---~~~~~~~~~~~----~hdv~a~~~~l~~ 74 (137)
.|+++++.|+++| ||++||+++|+ ||+++++.|.+++..+ | ++...+++.++ +|++++++ . .+
T Consensus 36 ~d~~~i~~~l~ve~A~a~al~~~Gi-ip~~~a~~I~~al~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~vi~~~-~-~e 112 (450)
T cd01357 36 IHPELIRALAMVKKAAALANAELGL-LDEEKAEAIVKACDEIIAGKLHDQFVVDVIQGGAGTSTNMNANEVIANR-A-LE 112 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhccccCCCccchhhccccchhhhhHhHHHHHH-H-HH
Confidence 4789999999999 99999999999 9999999999987432 2 34444444455 78888777 3 88
Q ss_pred HcCc-ccCc--------cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 75 QCRK-ASSI--------IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 75 ~~g~-~~~~--------lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
++|+ .|+| ||+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 113 ~~g~~~g~~~~~h~~~~vH~GrSrnD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~t~m~GrTH~ 184 (450)
T cd01357 113 LLGHEKGEYQYVHPNDHVNMSQSTNDVYPTALRLALILLLRKLLDALAALQEAFQAKAREFADVLKMGRTQL 184 (450)
T ss_pred HhCccccCCcccCCcccccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccC
Confidence 8884 5787 9999999999999999999999999999999999999999999999999999997
This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=6.3e-29 Score=212.76 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=114.0
Q ss_pred ccChHHHHHHHHHHH------HHHHHHhhcCCCCCHHHHHHHHHhcccC------CHHHHHhHHhhhcCchHHHHHHHHH
Q psy6016 7 FQSYSGRINKVIKVY------SILFCSQELGLNITRDQIEELKDNMMKL------DLDRAAAEEKLTRHDVMAHVHVYAE 74 (137)
Q Consensus 7 ~~s~~~~~~~~~~ve------A~a~al~~~Gi~i~~~~a~~I~~~l~~~------~~~~~~~~~~~~~hdv~a~~~~l~~ 74 (137)
.||+..+++.|+.+| ||+.||+++|| ||+++++.|.+++..+ |++.+.+.+.+++|+++ ++.|++
T Consensus 18 ~~~~~~~~~~~l~~e~i~~~~A~a~~l~~~Gi-ip~~~a~~I~~~l~~~~~~~~~~~~~~~~~~~ed~h~~i--e~~L~~ 94 (614)
T PRK12308 18 QFNDSLRFDYRLAEQDIVGSIAWSKALLSVGV-LSEEEQQKLELALNELKLEVMEDPEQILLSDAEDIHSWV--EQQLIG 94 (614)
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHH--HHHHHH
Confidence 488899999998888 89999999999 9999999999988543 22334445566777665 488999
Q ss_pred HcCcccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 75 QCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 75 ~~g~~~~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
++|+.++|+|+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 95 ~~g~~~~~iH~g~S~nD~~~Ta~~L~~r~~~~~l~~~l~~l~~~l~~~a~~~~~t~m~grTH~ 157 (614)
T PRK12308 95 KVGDLGKKLHTGRSRNDQVATDLKLWCRQQGQQLLLALDQLQQQMVNVAERHQGTVLPGYTHL 157 (614)
T ss_pred HhcccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcCC
Confidence 999889999999999999999999999999999999999999999999999999999999996
>PRK04833 argininosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=1.3e-28 Score=204.64 Aligned_cols=130 Identities=18% Similarity=0.147 Sum_probs=111.6
Q ss_pred ccChHHHHHHHHH---HH---HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHH-H--HhHHhhhcCchHHHHH-HHHHHc
Q psy6016 7 FQSYSGRINKVIK---VY---SILFCSQELGLNITRDQIEELKDNMMKLDLDR-A--AAEEKLTRHDVMAHVH-VYAEQC 76 (137)
Q Consensus 7 ~~s~~~~~~~~~~---ve---A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~-~--~~~~~~~~hdv~a~~~-~l~~~~ 76 (137)
.||+..+++.|+. || ||+.||+++|+ ||+++++.|.++|..+..+. . ........+|+..+++ .|.+++
T Consensus 18 ~~~~~~~~d~~l~~~~i~~~~Aha~~l~e~Gi-i~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~edv~~~ie~~L~~~~ 96 (455)
T PRK04833 18 QFNDSLRFDYRLAEQDIVGSVAWSKALVTVGV-LTADEQQQLEEALNELLEEVRANPQQILASDAEDIHSWVEGKLIDKV 96 (455)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhhhhcCCcccCCCCCchHHHHHHHHHHHHh
Confidence 5788999999999 88 99999999999 99999999999986541110 0 1111223456877776 799999
Q ss_pred CcccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 77 RKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 77 g~~~~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+.++|+|+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 97 g~~g~~lH~grSrnD~~~Ta~rl~~r~~l~~l~~~l~~l~~~L~~~A~~~~~tvm~GrTH~ 157 (455)
T PRK04833 97 GDLGKKLHTGRSRNDQVATDLKLWCKDQVAELLTALRQLQSALVETAENNQDAVMPGYTHL 157 (455)
T ss_pred ccccCcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeccccC
Confidence 9778999999999999999999999999999999999999999999999999999999996
>TIGR00839 aspA aspartate ammonia-lyase
Back Show alignment and domain information
Probab=99.95 E-value=5.2e-28 Score=201.42 Aligned_cols=130 Identities=13% Similarity=0.120 Sum_probs=112.0
Q ss_pred CcccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC-C------HHHHHhHHhhhc-------CchHHHH
Q psy6016 5 GTFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL-D------LDRAAAEEKLTR-------HDVMAHV 69 (137)
Q Consensus 5 ~~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~-~------~~~~~~~~~~~~-------hdv~a~~ 69 (137)
.++..++++++.|+++| ||++||.++|+ ||+++++.|.+++..+ + ...+......++ |+|++++
T Consensus 34 ~~~~~~~~~i~~~l~ve~A~a~al~e~Gi-Ip~~~a~~I~~al~~~~d~~~~~~~~~l~~~~~~~g~~~~~~v~~vie~~ 112 (468)
T TIGR00839 34 NKISDIPEFVRGMVMVKKAAALANKELGT-IPESIANAIVAACDEILNNGKCHDQFPVDVYQGGAGTSVNMNTNEVIANL 112 (468)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhcccccccccccHHHccCccccccchHHHHHHH
Confidence 35666799999999999 99999999999 9999999999988442 2 122333344445 7777666
Q ss_pred HHHHHHcC-cccCcccc--------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 70 HVYAEQCR-KASSIIHL--------GATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 70 ~~l~~~~g-~~~~~lH~--------G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|.+++| +.|+|+|+ |+||||+++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+
T Consensus 113 --l~e~~g~~~g~~~H~~p~~~v~~G~S~nD~v~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 187 (468)
T TIGR00839 113 --ALELMGHQKGEYQYLNPNDHVNKSQSTNDAYPTGFRIAVYSSLIKLVDAINQLRDGFEQKAKEFADILKMGRTQL 187 (468)
T ss_pred --HHHHhCccccCeeecCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccC
Confidence 888899 57999995 9999999999999999999999999999999999999999999999999996
Fumarate hydratase scores as high as 570 bits against this model.
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=5.5e-28 Score=201.56 Aligned_cols=125 Identities=17% Similarity=0.231 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc---------CCHHHHHhHHhhhc----CchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK---------LDLDRAAAEEKLTR----HDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~---------~~~~~~~~~~~~~~----hdv~a~~~~l~~~ 75 (137)
.+++++.|+++| ||++||.++|+ ||+++++.|.+++.. ++++...+++.++. |++++++ .+ ++
T Consensus 44 ~~~~~~~~l~ve~A~a~al~~~Gi-i~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~~~~e~~~~~v~~~i~~~-~~-e~ 120 (472)
T PRK12273 44 YPELIRALAMVKKAAALANKELGL-LDEEKADAIVAACDEILAGKLHDQFVVDVIQGGAGTSTNMNANEVIANR-AL-EL 120 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhccccCCcccchhhccccchhhhHHHHHHHHH-HH-HH
Confidence 478899999999 99999999999 999999999998843 55556655556667 7777776 44 78
Q ss_pred cCc-ccCc--cc------cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CRK-ASSI--IH------LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g~-~~~~--lH------~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+ .++| +| +|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 121 ~g~~~~~~~~vHp~d~v~~GrSrnD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~dt~m~GrTH~ 191 (472)
T PRK12273 121 LGHEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSLRKLLDALEQLQEAFEAKAKEFADILKMGRTQL 191 (472)
T ss_pred hCcccCCcceeCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEEeecccC
Confidence 884 5767 99 99999999999999999999999999999999999999999999999999996
>PRK13353 aspartate ammonia-lyase; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=9.9e-28 Score=200.08 Aligned_cols=125 Identities=16% Similarity=0.189 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC------C---HHHHHhHHhhh----cCchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL------D---LDRAAAEEKLT----RHDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~------~---~~~~~~~~~~~----~hdv~a~~~~l~~~ 75 (137)
+.++++.|+++| |||++|.++|+ ||+++++.|.+++..+ | ++...+++.++ +|++++ +.+.++
T Consensus 42 ~~~~i~a~~~ve~A~a~~l~~~Gl-ip~~~a~~I~~al~~i~~~~~~d~f~~~~~~~~~~~~~~~n~~~vi~--~~l~e~ 118 (473)
T PRK13353 42 HPELIRAFAQVKKAAALANADLGL-LPRRIAEAIVQACDEILAGKLHDQFIVDPIQGGAGTSTNMNANEVIA--NRALEL 118 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhccccCCCCcchhhccccchhcchhhHHHH--HHHHHH
Confidence 588999999999 99999999999 9999999999988442 2 34444444455 667665 778899
Q ss_pred cCcc-cCc--------cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CRKA-SSI--------IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g~~-~~~--------lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+. |+| ||+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+
T Consensus 119 ~g~~~g~~~~~hp~d~vH~GrSrnD~v~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~~~~~~im~GrTH~ 189 (473)
T PRK13353 119 LGGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIAALNLLEGLLAAMGALQDVFEEKAAEFDHVIKMGRTQL 189 (473)
T ss_pred hCccccCCccCCcccCccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccC
Confidence 9854 775 9999999999999999999999999999999999999999999999999999996
>PRK00485 fumC fumarate hydratase; Reviewed
Back Show alignment and domain information
Probab=99.95 E-value=2e-27 Score=197.94 Aligned_cols=125 Identities=20% Similarity=0.190 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC-----C---HHHHHhHHhhhc-----CchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL-----D---LDRAAAEEKLTR-----HDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~-----~---~~~~~~~~~~~~-----hdv~a~~~~l~~~ 75 (137)
|.++++.|+++| ||++||.++|+ ||+++++.|.+++..+ + +..+...+..++ |+++++ ...+.
T Consensus 41 ~~~~~~~~l~ve~A~a~al~~~Gi-ip~~~a~~I~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~--~~~~~ 117 (464)
T PRK00485 41 PRELIRALALLKKAAARVNAELGL-LDAEKADAIVAAADEVIAGKHDDHFPLDVWQTGSGTQSNMNVNEVIAN--RASEL 117 (464)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhCccccCCCcchhhccccccccccHHHHHHH--HHHHh
Confidence 588899999999 99999999999 9999999999988543 2 222322223333 555554 23344
Q ss_pred cC-c--------ccCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CR-K--------ASSIIHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g-~--------~~~~lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.| . .++|||+|+|||||++|+++|++|+++ ..+.+.|..++++|.++|++|++|+||||||+
T Consensus 118 ~g~~~~~~~~~h~~~~vh~G~SrnD~v~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~ 189 (464)
T PRK00485 118 LGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAIVERLLPALEHLRDTLAAKAEEFADIVKIGRTHL 189 (464)
T ss_pred cCccccccCccCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeecC
Confidence 46 3 567777999999999999999999999 89999999999999999999999999999996
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.95 E-value=3.4e-27 Score=194.01 Aligned_cols=114 Identities=18% Similarity=0.161 Sum_probs=101.8
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhH---HhhhcCch-HHHHHHHHHHcCcccCccccCCChhhHHHHHH
Q psy6016 22 SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAE---EKLTRHDV-MAHVHVYAEQCRKASSIIHLGATSCYVGDNTD 97 (137)
Q Consensus 22 A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~---~~~~~hdv-~a~~~~l~~~~g~~~~~lH~G~TsnDi~dTa~ 97 (137)
||+.||.+.|| |++++++.|.++|.++. +++.++ .....+|| .++|+.|++++|+.|+|+|+||||||||.|++
T Consensus 41 AH~~mL~~~Gi-i~~ee~~~I~~~L~~l~-~e~~~g~~~~~~~~EDvH~aiE~~L~~~iG~~ggkLhtgRSRNDQVatd~ 118 (459)
T COG0165 41 AHAKMLAKQGI-ITEEEAAKILEGLEELL-EEIRAGKFELDPDDEDVHTAIEARLIERIGDVGGKLHTGRSRNDQVATDL 118 (459)
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHHH-HHHhcCCccCCCccccHHHHHHHHHHHHHhhhhchhccccchhHHHHHHH
Confidence 99999999999 99999999999996663 233222 12235677 88999999999988999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 98 LIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 98 ~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+||+|+.+..|...+..|+++|.++|++|.+|+||||||+
T Consensus 119 rL~lr~~~~~l~~~i~~l~~aL~~~Ae~~~~~imPGyTHl 158 (459)
T COG0165 119 RLWLRDKLLELLELIRILQKALLDLAEEHAETVMPGYTHL 158 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccCCcccc
Confidence 9999999999999999999999999999999999999996
>cd01362 Fumarase_classII Class II fumarases
Back Show alignment and domain information
Probab=99.94 E-value=5.5e-27 Score=194.81 Aligned_cols=125 Identities=21% Similarity=0.200 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC-----C---HHHHHhHHhhhc-----CchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL-----D---LDRAAAEEKLTR-----HDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~-----~---~~~~~~~~~~~~-----hdv~a~~~~l~~~ 75 (137)
++.+++.|++|| ||+++|+++|+ ||+++++.|.+++..+ + +..+......++ |++++ ....+.
T Consensus 37 ~~~~i~~~l~ve~A~a~al~~~Gi-Ip~~~a~~I~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~--~~~~~~ 113 (455)
T cd01362 37 PRELIRALGLLKKAAAQANAELGL-LDEEKADAIVQAADEVIAGKLDDHFPLVVWQTGSGTQTNMNVNEVIA--NRAIEL 113 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhcccccCCceehhhccccccccccHHHHHH--HHHHHh
Confidence 478899999999 99999999999 9999999999988443 2 222222222333 44443 222344
Q ss_pred cC---------cccCccccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CR---------KASSIIHLGATSCYVGDNTDLIQIRDAFD-ILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g---------~~~~~lH~G~TsnDi~dTa~~L~lr~~l~-~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.| ..++|||+|+|||||+||+++|++|+++. .+.+.|..++++|.++|++|++|+||||||+
T Consensus 114 ~g~~~g~~~~~~~~~~vH~G~SrnDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~ 185 (455)
T cd01362 114 LGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPALKHLIDALDAKADEFKDIVKIGRTHL 185 (455)
T ss_pred cCcccCCcCcCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccC
Confidence 46 34778999999999999999999999994 6999999999999999999999999999996
This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
>TIGR00979 fumC_II fumarate hydratase, class II
Back Show alignment and domain information
Probab=99.94 E-value=9.1e-27 Score=193.63 Aligned_cols=124 Identities=19% Similarity=0.152 Sum_probs=107.6
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc-----CC---HHHHHhHHhhhc-----CchHHHHHHHHHHc
Q psy6016 11 SGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK-----LD---LDRAAAEEKLTR-----HDVMAHVHVYAEQC 76 (137)
Q Consensus 11 ~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~-----~~---~~~~~~~~~~~~-----hdv~a~~~~l~~~~ 76 (137)
...++.|++|| ||++||.++|+ ||+++++.|.+++.. +| +..+.+.+..++ |+|+++ .+.+++
T Consensus 39 ~~~i~a~~~ve~A~a~a~~~~Gi-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~via~--~l~e~~ 115 (458)
T TIGR00979 39 LELIHAFAILKKAAAIVNEDLGK-LDAKKADAIVQAADEILAGKLDDHFPLVVWQTGSGTQSNMNVNEVIAN--RAIELL 115 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhccccCCCceecccccccccccccHHHHHHH--HHHHHc
Confidence 77899999999 99999999999 999999999998844 33 233333444555 888877 789999
Q ss_pred Cc-c--cCccc------cCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 77 RK-A--SSIIH------LGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 77 g~-~--~~~lH------~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+ . ++|+| +|+||||+++|+++|++|+++ ..+.+.|..++++|.++|++|++|+||||||+
T Consensus 116 g~~~g~~~~vH~~d~vn~G~S~nDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~ 186 (458)
T TIGR00979 116 GGKLGSKQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQLIPALENLKKTLDAKSKEFAHIVKIGRTHL 186 (458)
T ss_pred CcccCCCceeCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccc
Confidence 84 4 35699 699999999999999999999 69999999999999999999999999999997
Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
>TIGR00838 argH argininosuccinate lyase
Back Show alignment and domain information
Probab=99.94 E-value=1.6e-26 Score=192.04 Aligned_cols=127 Identities=16% Similarity=0.124 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHh--HHhhhcCch-HHHHHHHHHHcC-cccCccc
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAA--EEKLTRHDV-MAHVHVYAEQCR-KASSIIH 84 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~--~~~~~~hdv-~a~~~~l~~~~g-~~~~~lH 84 (137)
|...+..-+.++ ||+.||.++|+ ||++.++.|.++|+++....... ......+|+ +++++.|++++| +.++|+|
T Consensus 24 d~~l~~~~i~~~~Ah~~~L~~~G~-l~~~~a~~I~~al~~i~~~~~~~~~~~~~~~~d~~~~ie~~l~e~~g~~~g~~iH 102 (455)
T TIGR00838 24 DKELAEYDIEGSIAHTKMLKKAGI-LTEEEAAKIIEGLNELKEEGREGPFILDPDDEDIHMAIERELIDRVGEDLGGKLH 102 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHcCcccCCcCCCCCcCcHHHHHHHHHHHHhCCCccCCcc
Confidence 444455557788 99999999999 99999999999987652211110 012234677 789999999999 6688999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+||||+++|+++|++|+++..+.+.|..++++|.++|++|+++|||||||+
T Consensus 103 ~g~SrnD~~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~m~grTH~ 155 (455)
T TIGR00838 103 TGRSRNDQVATDLRLYLRDHVLELAEALLDLQDALIELAEKHVETLMPGYTHL 155 (455)
T ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccc
Confidence 99999999999999999999999999999999999999999999999999996
This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
>PLN02646 argininosuccinate lyase
Back Show alignment and domain information
Probab=99.94 E-value=1.1e-26 Score=193.77 Aligned_cols=119 Identities=22% Similarity=0.225 Sum_probs=100.9
Q ss_pred HHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHH-hH-HhhhcCch-HHHHHHHHHHcCcccCccccCCChhhHH
Q psy6016 18 IKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAA-AE-EKLTRHDV-MAHVHVYAEQCRKASSIIHLGATSCYVG 93 (137)
Q Consensus 18 ~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~-~~-~~~~~hdv-~a~~~~l~~~~g~~~~~lH~G~TsnDi~ 93 (137)
+... ||+.||.++|+ ||+++++.|.++|+++..+... .. ......|+ +++|+.|.+++|+.|+|+|+|+|||||+
T Consensus 49 i~~~~Aha~~L~~~Gi-i~~~~a~~I~~al~~i~~~~~~~~f~~~~~~ed~h~~iE~~L~e~~G~~g~~lH~grSrND~v 127 (474)
T PLN02646 49 IMGSKAHASMLAKQGI-ITDEDRDSILDGLDEIEKEIEAGKFEWRPDREDVHMNNEARLTELIGEPAKKLHTARSRNDQV 127 (474)
T ss_pred HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHcCcccCCCcCCCCCCchHHHHHHHHHHHhchhhCcccCCCChhhHH
Confidence 4445 99999999999 9999999999998665211110 00 01112455 8899999999998789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 94 DNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 94 dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 128 ~Ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~dtvmpGrTHl 171 (474)
T PLN02646 128 ATDTRLWCRDAIDVIRKRIKTLQVALVELAEKNVDLVVPGYTHL 171 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEecccCC
Confidence 99999999999999999999999999999999999999999996
>PRK00855 argininosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=99.93 E-value=6.9e-26 Score=188.48 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=106.9
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHH-hH-HhhhcCch-HHHHHHHHHHcCcccCccccC
Q psy6016 11 SGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAA-AE-EKLTRHDV-MAHVHVYAEQCRKASSIIHLG 86 (137)
Q Consensus 11 ~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~-~~-~~~~~hdv-~a~~~~l~~~~g~~~~~lH~G 86 (137)
...+.....++ ||+.||.++|+ ||++.++.|.++|.++...... .. ....++|+ +++++++.+++|+.++|+|+|
T Consensus 30 ~~~~~~~~~~~~Aha~~l~~~G~-l~~~~a~~i~~al~~i~~~~~~~~~~~~~~~~d~~~~ie~~l~~~~g~~g~~iH~g 108 (459)
T PRK00855 30 KRLAEEDIAGSIAHARMLAKQGI-LSEEEAEKILAGLDEILEEIEAGKFEFSPELEDIHMAIEARLTERIGDVGGKLHTG 108 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHhhcccCCcccCCCCCcHHHHHHHHHHHHhccccCcccCC
Confidence 34455667789 99999999999 9999999999998665311110 00 01135666 788889999999778999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 87 ATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 87 ~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+||||+++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 109 ~SrnD~~~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~~~~~t~m~GrTH~ 159 (459)
T PRK00855 109 RSRNDQVATDLRLYLRDEIDEIAELLLELQKALLDLAEEHADTIMPGYTHL 159 (459)
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcCC
Confidence 999999999999999999999999999999999999999999999999996
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes
Back Show alignment and domain information
Probab=99.93 E-value=2.5e-25 Score=184.67 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC-----C---HHHHHhHHhh-hcC-chHHHHHHHH-HHcC
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL-----D---LDRAAAEEKL-TRH-DVMAHVHVYA-EQCR 77 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~-----~---~~~~~~~~~~-~~h-dv~a~~~~l~-~~~g 77 (137)
+++.++.|+++| ||++||++.|+ ||+++++.|.+++..+ | +..+...... +.| .|.+++..+. +++|
T Consensus 37 ~~~~i~~~l~ve~A~a~al~~~Gi-ip~~~a~~I~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (450)
T cd01596 37 PPELIRALALVKKAAALANAELGL-LDEEKADAIVQACDEVIAGKLDDQFPLDVWQTGSGTSTNMNVNEVIANRALELLG 115 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHcCcccCCCcccHHhccCcccccchHHHHHHHHHHHHhc
Confidence 478899999999 99999999999 9999999999988543 2 1122211111 211 1222233333 6778
Q ss_pred c-ccCc--------cccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 78 K-ASSI--------IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 78 ~-~~~~--------lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+ .|+| +|+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 116 ~~~g~~~~h~~~~v~h~g~SrnD~v~t~~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~ 184 (450)
T cd01596 116 GKKGKYPVHPNDDVNNSQSSNDDFPPAAHIAAALALLERLLPALEQLQDALDAKAEEFADIVKIGRTHL 184 (450)
T ss_pred cccCCcccCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccc
Confidence 4 4777 6799999999999999999999999999999999999999999999999999996
This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
>PRK12425 fumarate hydratase; Provisional
Back Show alignment and domain information
Probab=99.91 E-value=1.8e-24 Score=180.10 Aligned_cols=126 Identities=13% Similarity=0.038 Sum_probs=103.4
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHH-hHH-----hhhcCch-HHHH----HHHHHHcCc
Q psy6016 11 SGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAA-AEE-----KLTRHDV-MAHV----HVYAEQCRK 78 (137)
Q Consensus 11 ~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~-~~~-----~~~~hdv-~a~~----~~l~~~~g~ 78 (137)
...++.+..|. |||.||.++|+ ||++.+++|.++|+++...... ... ...+.|+ ++++ +.+.+++|+
T Consensus 40 ~~~i~a~~~ik~Aha~~l~~~G~-l~~~~~~~I~~al~ei~~~~~~~~f~~~~~~~g~~ed~~mnvnevi~~~~~e~~G~ 118 (464)
T PRK12425 40 LAVLHALALIKKAAARVNDRNGD-LPADIARLIEQAADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGRANELAGN 118 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHcCcccCCCCccCCCCCCcchHHHHHHHHHHHHHHHHhCc
Confidence 67799999999 99999999999 9999999999998665211110 000 1124555 6663 445566675
Q ss_pred -ccCc--------cccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 79 -ASSI--------IHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 79 -~~~~--------lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.|++ ||+|+||||+++|+++|++|+++ ..+.+.|..++++|.++|++|++|+||||||+
T Consensus 119 ~~g~~~~vhpn~~vh~g~S~ND~~~Ta~~L~~r~~l~~~l~~~L~~l~~~L~~~A~~~~~tim~GrTHl 187 (464)
T PRK12425 119 GRGGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHAKLVKTGRTHM 187 (464)
T ss_pred ccccccccCchhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccc
Confidence 5667 99999999999999999999999 59999999999999999999999999999997
>PRK06389 argininosuccinate lyase; Provisional
Back Show alignment and domain information
Probab=99.91 E-value=1.8e-24 Score=178.29 Aligned_cols=114 Identities=16% Similarity=0.055 Sum_probs=97.4
Q ss_pred HHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCch-HHHHHHHHHHcCcccCccccCCChhhHHHH
Q psy6016 18 IKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDV-MAHVHVYAEQCRKASSIIHLGATSCYVGDN 95 (137)
Q Consensus 18 ~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv-~a~~~~l~~~~g~~~~~lH~G~TsnDi~dT 95 (137)
+... ||+.||.+.|| ||++++..|.++|.++....+. .....+|+ .++|..|++++|+.|+++|+|||||||+.|
T Consensus 36 i~~~~AH~~mL~~~gi-i~~~e~~~i~~~L~~i~~~~~~--~~~~~EDvh~~iE~~L~~~~G~~gg~lhtgRSRNDqvat 112 (434)
T PRK06389 36 IINLLAYHVALAQRRL-ITEKAPKCVINALIDIYKNGIE--IDLDLEDVHTAIENFVIRRCGDMFKNFRLFLSRNEQVHA 112 (434)
T ss_pred HHHhHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHcCCCc--CCCCCCchHHHHHHHHHHHhchhhhhhcccCCHHHHHHH
Confidence 3445 99999999999 9999999999998665211110 01224566 788889999999889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 96 TDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 96 a~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+++|++|+.+..+...+..++++|++. |.||+||||||+
T Consensus 113 ~~RL~~r~~~~~~~~~l~~l~~~l~~~---~~dtimpGyTHl 151 (434)
T PRK06389 113 DLNLFIIDKIIEIEKILYEIIKVIPGF---NLKGRLPGYTHF 151 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCceecccccc
Confidence 999999999999999999999999965 999999999996
>PLN00134 fumarate hydratase; Provisional
Back Show alignment and domain information
Probab=99.91 E-value=7e-24 Score=176.40 Aligned_cols=126 Identities=18% Similarity=0.100 Sum_probs=103.2
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHH---------HHHhHHhh-hcCch-HHHHHHHHHHcCc
Q psy6016 11 SGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLD---------RAAAEEKL-TRHDV-MAHVHVYAEQCRK 78 (137)
Q Consensus 11 ~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~---------~~~~~~~~-~~hdv-~a~~~~l~~~~g~ 78 (137)
++.++.++.|+ ||++|+.+.|+ ||++.++.|.++|+++... .+..+... ...++ ..++..+.+++|+
T Consensus 34 ~~~i~a~~~v~~A~a~~l~~~G~-l~~~~a~~I~~al~ei~~~~~~~~f~~~~~~~g~g~~~~~~v~evie~~l~e~~g~ 112 (458)
T PLN00134 34 EPIVRAFGIVKKAAAKVNMEYGL-LDPDIGKAIMQAADEVAEGKLDDHFPLVVWQTGSGTQTNMNANEVIANRAAEILGG 112 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHcCcccCCccccccccCCcccccCcHHHHHHHHHHHHhCc
Confidence 77899999999 99999999999 9999999999998654211 11111111 12333 2346678899995
Q ss_pred -ccCc--cc------cCCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 79 -ASSI--IH------LGATSCYVGDNTDLIQIR-DAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 79 -~~~~--lH------~G~TsnDi~dTa~~L~lr-~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.|+| +| +|+||||+++|+++|++| +++..+.+.|..++++|.++|++|++|+||||||+
T Consensus 113 ~~g~~~~lHp~d~vh~G~S~nDiv~Ta~~L~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 181 (458)
T PLN00134 113 PVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELHESLRAKSFEFKDIVKIGRTHL 181 (458)
T ss_pred ccCCccccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 5777 88 999999999999999999 55889999999999999999999999999999996
>KOG1316|consensus
Back Show alignment and domain information
Probab=99.90 E-value=1.4e-23 Score=166.64 Aligned_cols=114 Identities=23% Similarity=0.228 Sum_probs=101.0
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHH---hhhcCch-HHHHHHHHHHcCcccCccccCCChhhHHHHHH
Q psy6016 22 SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEE---KLTRHDV-MAHVHVYAEQCRKASSIIHLGATSCYVGDNTD 97 (137)
Q Consensus 22 A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~---~~~~hdv-~a~~~~l~~~~g~~~~~lH~G~TsnDi~dTa~ 97 (137)
|+|++|.++|+ |++++.++|.++++.+..+ +.+.. ..+.+|| .+.|+.|.+.+|+.++++|+||||||||.|.+
T Consensus 44 aya~~L~~~gl-it~~e~dkil~gLe~i~~e-w~~~kf~~~p~dEDvHtanErrL~eliG~~agKlHTgRSRNDQV~TDl 121 (464)
T KOG1316|consen 44 AYAKALEKAGL-ITEAELDKILKGLEKIRRE-WAAGKFKLNPNDEDVHTANERRLTELIGEIAGKLHTGRSRNDQVVTDL 121 (464)
T ss_pred HHHHHHHHcCC-CcHHHHHHHHHHHHHHHHH-HhcCceEeCCCchhhhhHHHHHHHHHHhhhhhhcccCccccchhHHHH
Confidence 99999999999 9999999999998766322 22211 1234566 78999999999988999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 98 LIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 98 ~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+||+|++++.++..+..|++++.++|+.+.+++||||||+
T Consensus 122 RLw~r~~i~~~~~~l~~L~~~~v~rAe~~~dvlmpGYTHL 161 (464)
T KOG1316|consen 122 RLWLRDAIDTILGLLWNLIRVLVDRAEAELDVLMPGYTHL 161 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCeeccChhhh
Confidence 9999999999999999999999999999999999999996
>PRK14515 aspartate ammonia-lyase; Provisional
Back Show alignment and domain information
Probab=99.89 E-value=9.8e-23 Score=170.18 Aligned_cols=126 Identities=11% Similarity=0.090 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHH-----hHHhhhcCc------h-HHHHHHHHHHc
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAA-----AEEKLTRHD------V-MAHVHVYAEQC 76 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~-----~~~~~~~hd------v-~a~~~~l~~~~ 76 (137)
+...++.+..+. |||.|+.++|+ ||++.+++|.++|+++...... .... .+.+ + ..+++.+.+++
T Consensus 48 ~~~~i~~~~~v~~A~a~~l~~~G~-l~~~~~~~I~~al~ei~~~~~~~~f~~~~~~-~g~~t~~nmnvnevie~~~~~~~ 125 (479)
T PRK14515 48 HEGLIKAFAIVKKAAALANTDVGR-LELNKGGAIAEAAQEILDGKWHDHFIVDPIQ-GGAGTSMNMNANEVIANRALELL 125 (479)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHcCcccCCCCCCccc-CCCcccccchHHHHHHHHHHHHh
Confidence 366788899999 99999999999 9999999999998654111110 0011 1111 2 22577788999
Q ss_pred Ccc-cC--------ccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 77 RKA-SS--------IIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 77 g~~-~~--------~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+. |+ +||+||||||+++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+
T Consensus 126 G~~~g~~~~~hpnd~vn~grS~ND~v~Ta~~L~~~~~l~~l~~~L~~L~~~L~~~A~~~~~~vm~GrTHl 195 (479)
T PRK14515 126 GMEKGDYHYISPNSHVNMAQSTNDAFPTAIHIATLNALEGLLQTMGYMHDVFELKAEQFDHVIKMGRTHL 195 (479)
T ss_pred CcccCCccccCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhcc
Confidence 964 77 55599999999999999999999999999999999999999999999999999996
>KOG2700|consensus
Back Show alignment and domain information
Probab=99.80 E-value=1.1e-19 Score=148.06 Aligned_cols=133 Identities=45% Similarity=0.734 Sum_probs=124.5
Q ss_pred CcccChHHHHHHHHHHH-HHHHHHhhcCC-CCCHHHHHHHHH--hcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCccc
Q psy6016 5 GTFQSYSGRINKVIKVY-SILFCSQELGL-NITRDQIEELKD--NMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKAS 80 (137)
Q Consensus 5 ~~~~s~~~~~~~~~~ve-A~a~al~~~Gi-~i~~~~a~~I~~--~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~ 80 (137)
..+||+.+++..|..+| .+|.+..++|+ +||+++++++.+ .++.+|+..+.+.+...+|||++.++.+.+.|+.+.
T Consensus 21 ~~~~s~~~~~~twr~lw~~lA~ae~~lgL~~itk~ai~e~~s~~~~e~~d~~~l~~ee~r~~hdVmahvh~~~~~cp~aa 100 (481)
T KOG2700|consen 21 NPIFSDRNKFSTWRRLWLWLAEAEKELGLTTITKEAIEEMKSSRDIENIDFTALSPEEGRYRHDVMAHVHSFGELCPIAA 100 (481)
T ss_pred chhhhhhhhhhhhhHHHHhhhhhhhcCCcccchHHHHHHHHhhccccccchhhcChhhhhhcccHHHHHHHHHhhcchhc
Confidence 45789999999999999 88888888887 499999999998 557889999998999999999999999999998888
Q ss_pred CccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 81 SIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 81 ~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+++|.|+||+++.|.+....+|++.+++++.|...++.|..++.+|++++|.||||+
T Consensus 101 giihlgatsc~vtdnadli~~rd~~k~i~~~l~~vIdrls~~~~~~k~~~~~g~Th~ 157 (481)
T KOG2700|consen 101 GIIHLGATSCFVTDNADLIELRDASKLILPYLAGVIDRLSQFADKYKEKPTLGRTHL 157 (481)
T ss_pred ceEEeeeeeeeecCCccceechhHHHHHHHHHHHHHHHHHHHHHHhccceecccccC
Confidence 899999999999999999999999999999999999999999999999999999995
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions
Back Show alignment and domain information
Probab=99.49 E-value=1.4e-13 Score=104.34 Aligned_cols=70 Identities=31% Similarity=0.370 Sum_probs=61.9
Q ss_pred HHHHHHHHcCcc-cCcc-----ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 68 HVHVYAEQCRKA-SSII-----HLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 68 ~~~~l~~~~g~~-~~~l-----H~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
++..|...+|.. +++. |+|+||||+++|+.++++|+++..+.+.+..+..++..+|++|++++||||||+
T Consensus 16 i~~~L~~~~~~~~~~~~~~~~~h~g~s~~d~~~t~~~~~~~~~l~~l~~~l~~~~~~l~~~a~~~~~~~~~~~th~ 91 (231)
T cd01594 16 VEEVLAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDALALKAEAHKGTVMPGRTHL 91 (231)
T ss_pred HHHHHHHHHHHHhccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEeeccccc
Confidence 455666666643 4444 999999999999999999999999999999999999999999999999999996
Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
>COG0114 FumC Fumarase [Energy production and conversion]
Back Show alignment and domain information
Probab=99.44 E-value=3.6e-13 Score=109.28 Aligned_cols=125 Identities=21% Similarity=0.211 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc---------CCHHHHHhHHh----hhcCchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK---------LDLDRAAAEEK----LTRHDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~---------~~~~~~~~~~~----~~~hdv~a~~~~l~~~ 75 (137)
+...+.++.-++ |.|+++.++|. +|++.+++|..++++ |.+...+.+.. -+.++|++... .+.
T Consensus 40 p~~~I~Al~~lKkaaA~~N~~LG~-L~~~~a~aI~~Aadev~~Gk~d~~FPl~VwQTGSGTqsNMN~NEVIanrA--~e~ 116 (462)
T COG0114 40 PREIIRALGLLKKAAAQVNADLGL-LDPEKADAIIAAADEVLAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRA--SEL 116 (462)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHcCcccCCCCeEEEecCCCccccccHHHHHHHHH--HHH
Confidence 445577788888 99999999999 999999999988743 22222222221 12345555543 344
Q ss_pred cCc---------ccCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CRK---------ASSIIHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g~---------~~~~lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|. ....|+.|.||||++.||+++..-.++ ..+++.|..|+++|.++|++|.+.+.+||||+
T Consensus 117 ~gg~~g~~~~VHPNDhVN~sQSSNDtfPTAmhIAa~~~v~~~LiPaL~~L~~~L~~Ka~~~~~iVKiGRTHL 188 (462)
T COG0114 117 LGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLAAKAEEFADVVKIGRTHL 188 (462)
T ss_pred hCcccCCCCCCCCCCcCCcccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcCcccc
Confidence 552 146889999999999999999888887 68999999999999999999999999999996
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.40 E-value=1.4e-12 Score=105.76 Aligned_cols=125 Identities=16% Similarity=0.194 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC---------CHHHHHhHHhh----hcCchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL---------DLDRAAAEEKL----TRHDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~---------~~~~~~~~~~~----~~hdv~a~~~~l~~~ 75 (137)
-+..++.+.-|. |.|.+..++|. ||++.+++|.++|+++ -.+.++.+... +-+.|++... .|.
T Consensus 43 ~p~~i~a~~~VKKAaAlaN~elg~-l~~~~~~aIv~ACDeil~Gk~~dqFvvD~~QGGAGTS~NMN~NEVIAN~A--lE~ 119 (471)
T COG1027 43 VPEFIRAMAMVKKAAALANKELGA-LPKEIADAIVKACDEILDGKCHDQFVVDVYQGGAGTSTNMNANEVIANRA--LEL 119 (471)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhCC-CCHHHHHHHHHHHHHHHcCccccccceeccccCCCccccccHHHHHHHHH--HHH
Confidence 367789999999 99999999999 9999999999999653 11222222211 2335665544 455
Q ss_pred cCcc---------cCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CRKA---------SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g~~---------~~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|.. ..+|+.+.|+||+..|+.++.+-..+..+++.+..|++++..+++++++.++|||||+
T Consensus 120 lG~~KGeY~~~hPndhVNmsQSTND~yPTa~ria~~~~l~~L~~al~~L~~af~~Ka~EF~~ilKmGRTqL 190 (471)
T COG1027 120 LGHEKGEYQYLHPNDHVNMSQSTNDAYPTAFRIAVYKSLRKLIDALEDLIEAFERKAKEFADILKMGRTQL 190 (471)
T ss_pred hcCCCCceeeeCCccccchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcChhhh
Confidence 6632 3468899999999999999999999999999999999999999999999999999996
>KOG1317|consensus
Back Show alignment and domain information
Probab=98.24 E-value=2.7e-06 Score=68.31 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=84.7
Q ss_pred HHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC---------CHHHHHhHH--hh--hcCchHHHHHHHHHHcCc
Q psy6016 13 RINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL---------DLDRAAAEE--KL--TRHDVMAHVHVYAEQCRK 78 (137)
Q Consensus 13 ~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~---------~~~~~~~~~--~~--~~hdv~a~~~~l~~~~g~ 78 (137)
-++++--+. |.|....+.|+ ++..+.+|.++++++ .+-.+..+. .. +.++|++.. -++.+|.
T Consensus 70 ii~AfGiLKkaaA~vN~~~GL--Dpkis~Ai~~AadeV~~GKL~dhFPLvvwQTGSGTQsNMN~NEVIsNr--AieilGg 145 (487)
T KOG1317|consen 70 IIQAFGILKKAAAEVNQEYGL--DPKISKAISQAADEVASGKLNDHFPLVVWQTGSGTQSNMNANEVISNR--AIEILGG 145 (487)
T ss_pred HHHHHHHHHHHHHHHhHhhCC--ChHHHHHHHHHHHHHhcCcccccCceeEEecCCCccccCcHHHHHHHH--HHHHhcc
Confidence 355655666 99999999997 555666676665432 111111111 11 223444332 2444542
Q ss_pred --------ccCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 79 --------ASSIIHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 79 --------~~~~lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
...+++...||||...|++.+..--.+ ..+++.|..|.++|..++++++|.+.+||||.
T Consensus 146 ~~GsK~VHPNdHvN~SQSSNDTFPtamHIa~~~ei~~~L~P~l~~L~~aL~aKs~EfkdIiKIGRTHt 213 (487)
T KOG1317|consen 146 KLGSKKVHPNDHVNKSQSSNDTFPTAMHIAAATEINSRLIPALTNLRDALEAKSKEFKDIIKIGRTHT 213 (487)
T ss_pred cccCcccCCccccccccccCCccchHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhccccc
Confidence 144677889999999999999887666 68999999999999999999999999999995
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known
Back Show alignment and domain information
Probab=85.95 E-value=2.8 Score=25.54 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=31.6
Q ss_pred HHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcc
Q psy6016 11 SGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMM 47 (137)
Q Consensus 11 ~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~ 47 (137)
.+.++.+++.. ++..-..+.|. |+++.++.|.+.++
T Consensus 10 ~~l~~qm~e~kK~~idk~Ve~G~-iTqeqAd~ik~~id 46 (59)
T PF10925_consen 10 KALYKQMLELKKQIIDKYVEAGV-ITQEQADAIKKHID 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 34678889999 99999999999 99999999998874
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 137
d1c3ca_ 429
a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga
3e-14 d1re5a_ 448
a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso
5e-09 d1dofa_ 402
a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Py
9e-07 d1q5na_ 444
a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso
3e-05
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Length = 429
Back Hide information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Thermotoga maritima [TaxId: 2336]
Score = 65.7 bits (159), Expect = 3e-14
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 29 ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIHLGAT 88
ELG+ I + E +++N K+D++ E+ T HDV+A V + S H G T
Sbjct: 35 ELGM-IPKGVTERIRNNA-KIDVELFKKIEEKTNHDVVAFVEGIGSMIGEDSRFFHYGLT 92
Query: 89 SCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
S V D + + + +A IL+ L L AN++K PT+G TH
Sbjct: 93 SSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHG 141
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Length = 448
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Pseudomonas putida, strain KT2440 [TaxId: 303]
Score = 50.8 bits (120), Expect = 5e-09
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 29 ELGLNITRDQIEELKD--NMMKLDLDRAAAEEKLTRHDVMAHVHVYAE----QCRKASSI 82
GL + + ++ + D A + + V + +A
Sbjct: 39 SAGL-VPHSAVAAIEAACQAERYDTGALANAIATAGNSAIPLVKALGKVIATGVPEAERY 97
Query: 83 IHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
+HLGATS D ++Q+RDA D++ L L+ A K D P +G T L
Sbjct: 98 VHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWL 152
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 402
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 44.2 bits (103), Expect = 9e-07
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
Query: 9 SYSGRINKVIKVYSILFCSQ-ELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMA 67
+ IN ++V L C+ ELG+ R E++ + D E+ T HD+++
Sbjct: 19 TNEAIINAYLEVERALVCALEELGV-AERGCCEKVNKA--SVSADEVYRLERETGHDILS 75
Query: 68 HVHVYAEQCRKASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFK 127
V + + +H GATS + D + IR A + K LA A K+K
Sbjct: 76 --LVLLLEQKSGCRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYK 133
Query: 128 DLPTLGFTHL 137
L +G TH
Sbjct: 134 TLEMVGRTHG 143
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Length = 444
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Acinetobacter calcoaceticus [TaxId: 471]
Score = 40.1 bits (92), Expect = 3e-05
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 39 IEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRK----ASSIIHLGATSCYVGD 94
K + K+D D A L + + V + A+ +H GATS + D
Sbjct: 51 QRAAKTAIDKIDFDALATATGLAGNIAIPFVKQLTAIVKDADEDAARYVHWGATSQDILD 110
Query: 95 NTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137
++Q RDA I+ ++ C A ++ +G T L
Sbjct: 111 TACILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWL 153
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 137
d1f1oa_ 408
Adenylosuccinate lyase {Bacillus subtilis [TaxId:
100.0 d1c3ca_ 429
Adenylosuccinate lyase {Thermotoga maritima [TaxId
100.0 d1re5a_ 448
3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {
100.0 d1dofa_ 402
Adenylosuccinate lyase {Archaeon Pyrobaculum aerop
100.0 d1q5na_ 444
3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {
99.97 d1tj7a_ 455
Argininosuccinate lyase/delta-crystallin {Escheric
99.96 d1tjva_ 449
Argininosuccinate lyase/delta-crystallin {Domestic
99.95 d1k62b_ 459
Argininosuccinate lyase/delta-crystallin {Human (H
99.95 d1j3ua_ 462
L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T
99.93 d1jswa_ 459
L-aspartate ammonia lyase {Escherichia coli [TaxId
99.91 d1vdka_ 460
Fumarase {Thermus thermophilus [TaxId: 274]}
99.89 d1yfma_ 459
Fumarase {Baker's yeast (Saccharomyces cerevisiae)
99.86 d1fuoa_ 456
Fumarase {Escherichia coli [TaxId: 562]}
99.82
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]}
Back Hide information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=4.3e-36 Score=243.03 Aligned_cols=130 Identities=26% Similarity=0.313 Sum_probs=125.8
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH 84 (137)
.+|||+++++.|++|| |||++|.++|+ ||++++++|.+++ ++|++++.+.+..++|||+++++.|++++|+.++|||
T Consensus 4 ~ifs~~~~~~~~l~ve~A~a~a~~e~G~-ip~~~~~~i~~~~-~~~~~~~~~~~~~~~~~v~a~~~~L~e~~g~~~~~vH 81 (408)
T d1f1oa_ 4 AIWTDENRFQAWLEVEILACEAWAELGV-IPKEDVKVMRENA-SFDINRILEIEKDTRHDVVAFTRAVSESLGEERKWVH 81 (408)
T ss_pred HHCCcHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHhC-cCCHHHHHHHHhhcCCcHHHHHHHHHHHcCchhhhhc
Confidence 5899999999999999 99999999999 9999999999886 6889999999999999999999999999998899999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+||||++||+++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 82 ~G~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~ 134 (408)
T d1f1oa_ 82 YGLTSTDVVDTALSYLLKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHG 134 (408)
T ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCccccchHhc
Confidence 99999999999999999999999999999999999999999999999999996
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]}
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class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.4e-36 Score=242.83 Aligned_cols=130 Identities=28% Similarity=0.364 Sum_probs=126.1
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCccc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~lH 84 (137)
.+|||+++++.|++|| |+|++|+++|+ ||++++++|.+++ ++|++.+.+.+..++|||+++++.|.+++|+.++|+|
T Consensus 11 ~~fs~~~~~~~~~~ve~A~a~a~~~~g~-ip~~~~~~I~~~~-~~d~~~i~~~e~~t~hdV~a~v~~l~~~~g~~~~~vH 88 (429)
T d1c3ca_ 11 DLWTEEAKYRRWLEVELAVTRAYEELGM-IPKGVTERIRNNA-KIDVELFKKIEEKTNHDVVAFVEGIGSMIGEDSRFFH 88 (429)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHTTS-SCTTHHHHHHHHC-CCCHHHHHHHHHHHCCHHHHHHHHHHHHHGGGGGGTT
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHhhC-CCCHHHHHHHHHHhCCCcHHHHHHHHHHcchhhcccc
Confidence 4899999999999999 99999999999 9999999998886 6899999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+|||||+||+++|++|+++..+++.|..++++|.++|++|++|||||||||
T Consensus 89 ~G~Ts~Di~~ta~~l~~~~~~~~l~~~l~~l~~~l~~~a~~~~~t~m~grTh~ 141 (429)
T d1c3ca_ 89 YGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHG 141 (429)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCeeecchHhh
Confidence 99999999999999999999999999999999999999999999999999997
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
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class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Pseudomonas putida, strain KT2440 [TaxId: 303]
Probab=100.00 E-value=1.7e-33 Score=229.73 Aligned_cols=131 Identities=23% Similarity=0.297 Sum_probs=122.6
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhc--ccCCHHHHHhHHhhhcCchHHHHHHHHHHc----Cc
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNM--MKLDLDRAAAEEKLTRHDVMAHVHVYAEQC----RK 78 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l--~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~----g~ 78 (137)
.+|||+++++.|++|| |+|++++++|+ ||++++++|.+++ ..+|.+.+...+..++||+++++..+.+.+ |+
T Consensus 15 ~ifsd~~~~~~~l~ve~A~a~a~~e~G~-ip~~~~~~I~~~~~~~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~ 93 (448)
T d1re5a_ 15 EIFSDRGRLQGMLDFEAALARAEASAGL-VPHSAVAAIEAACQAERYDTGALANAIATAGNSAIPLVKALGKVIATGVPE 93 (448)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHTTTS-SCHHHHHHHHHHCCGGGSCHHHHHHHHHHHSSSHHHHHHHHHHHHHHHCGG
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhccccCcCHHHHHHHHhHhcCCcHHHHHHHHHHHhhcCcc
Confidence 4799999999999999 99999999999 9999999999988 457889999999999999999888776654 46
Q ss_pred ccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 79 ASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 79 ~~~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.++|||+|+|||||++|+++|++|+++..+.+.+..++++|.++|++|++||||||||+
T Consensus 94 ~~~~vH~G~TsnDi~~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~a~~~~~~~m~grTH~ 152 (448)
T d1re5a_ 94 AERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWL 152 (448)
T ss_dssp GGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred hHhHccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999997
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
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class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=100.00 E-value=1.5e-33 Score=227.56 Aligned_cols=128 Identities=26% Similarity=0.316 Sum_probs=113.3
Q ss_pred CcccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHHhhhcCchHHHHHHHHHHcCcccCcc
Q psy6016 5 GTFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEEKLTRHDVMAHVHVYAEQCRKASSII 83 (137)
Q Consensus 5 ~~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~g~~~~~l 83 (137)
..+|||+++++.|++|| |+|++|+++|+ ||++.+++|..+. +|..++.+.+..++|||++++..|.++.| ++||
T Consensus 15 ~~ifs~~~~~~~~l~ve~a~a~a~~e~G~-ip~~~a~~i~~~~--~d~~~i~~~e~~~~hdv~a~~~~l~~~~~--~~~v 89 (402)
T d1dofa_ 15 RRLFTNEAIINAYLEVERALVCALEELGV-AERGCCEKVNKAS--VSADEVYRLERETGHDILSLVLLLEQKSG--CRYV 89 (402)
T ss_dssp HTTSSHHHHHHHHHHHHHHHHHHHHHTTS-SCTTHHHHHHHCC--CCTTTC--------CHHHHHHHHHHHHHC--CSCT
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHhc--cCHHHHHHHHHHhCCCchHHHHHHhhhhH--HHHh
Confidence 35899999999999999 99999999999 9999999998764 66677777888999999999999999876 6899
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 84 HLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 84 H~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|+|+|||||+||+++|++|+++..+.+.+..++++|.++|++|++||||||||+
T Consensus 90 H~G~TsnDi~~ta~~l~~r~~~~~l~~~l~~l~~~L~~~a~~~~~t~m~grTH~ 143 (402)
T d1dofa_ 90 HYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHG 143 (402)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred hccCchHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHhhc
Confidence 999999999999999999999999999999999999999999999999999997
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
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class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)
species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=99.97 E-value=1.9e-31 Score=217.15 Aligned_cols=131 Identities=20% Similarity=0.279 Sum_probs=121.2
Q ss_pred cccChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhc----ccCCHHHHHhHHhhhcCchHHHHHHHHHHc---C
Q psy6016 6 TFQSYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNM----MKLDLDRAAAEEKLTRHDVMAHVHVYAEQC---R 77 (137)
Q Consensus 6 ~~~s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l----~~~~~~~~~~~~~~~~hdv~a~~~~l~~~~---g 77 (137)
.+|||+++++.|++|| |+|++|+++|+ ||++.+++|.+++ +++|++.+...+..++|++++++..+.... +
T Consensus 14 ~ifsd~~~i~~~~~ve~a~a~a~~~~g~-i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 92 (444)
T d1q5na_ 14 EIFSDRALVSYMVEAEVALAQAQAQVGV-IPQSAATVIQRAAKTAIDKIDFDALATATGLAGNIAIPFVKQLTAIVKDAD 92 (444)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHTTHHHHCCHHHHHHHHHHHSSSHHHHHHHHHHHHHTTC
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHhCCHHHHHHhhcccccchHHHHHHHHHHHhhcC
Confidence 4799999999999999 99999999999 9999999998876 358899998888899999999998776543 3
Q ss_pred -cccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 78 -KASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 78 -~~~~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+.++|||+|+|||||++|+++|++|+++..+.+.+..++++|.++|++|++||||||||+
T Consensus 93 ~~~~~~vh~g~ts~Di~~ta~~l~~~~~~~~l~~~l~~l~~~l~~~a~~~~~~~m~grTH~ 153 (444)
T d1q5na_ 93 EDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWL 153 (444)
T ss_dssp TTGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred cchHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHh
Confidence 458999999999999999999999999999999999999999999999999999999997
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]}
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class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=4.7e-29 Score=203.72 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=103.2
Q ss_pred HHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhHH----hhhcCch-HHHHHHHHHHcCcccCccccCCChhh
Q psy6016 18 IKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAEE----KLTRHDV-MAHVHVYAEQCRKASSIIHLGATSCY 91 (137)
Q Consensus 18 ~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~~----~~~~hdv-~a~~~~l~~~~g~~~~~lH~G~TsnD 91 (137)
+... ||+.||.++|| ||++++++|.++|+.+. +.+...+ ....+|| .+++..|.+++|+.++|||+|+||||
T Consensus 32 i~~~~Aha~~l~~~gi-i~~~~~~~I~~al~~i~-~~~~~~~~~~~~~~~edv~~~ie~~l~~~~g~~~~~vH~G~S~nD 109 (455)
T d1tj7a_ 32 IVGSVAWSKALVTVGV-LTAEEQAQLEEALNVLL-EDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRND 109 (455)
T ss_dssp HHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHH-HHHHHCGGGGGGSCCSSHHHHHHHHHHHHHGGGGGGTTTTCCHHH
T ss_pred HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH-HHHHcCCCccCCCCcccHHHHHHHHHHhhcCcchhhccCCccchh
Confidence 5555 99999999999 99999999999986652 2222211 2346788 66678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 92 VGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 92 i~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+++|+++|++|+++..+.+.|..|+++|.++|++|++||||||||+
T Consensus 110 ~~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~GrTH~ 155 (455)
T d1tj7a_ 110 QVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHL 155 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEETT
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhchhhhHHHHh
Confidence 9999999999999999999999999999999999999999999996
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]}
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class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]
Probab=99.95 E-value=7.6e-29 Score=202.03 Aligned_cols=126 Identities=16% Similarity=0.159 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhH---HhhhcCch-HHHHHHHHHHcCcccCccc
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAE---EKLTRHDV-MAHVHVYAEQCRKASSIIH 84 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~---~~~~~hdv-~a~~~~l~~~~g~~~~~lH 84 (137)
|...+...+... ||+.||.++|| ||+++++.|.++|+.+. ..+..+ .....+|| +++|..|.+++|+.++|||
T Consensus 15 D~~l~~~di~~~~Ah~~~l~~~Gi-i~~~~~~~I~~al~~i~-~~~~~~~~~~~~~~edi~~~ie~~l~e~~G~~~~~vh 92 (449)
T d1tjva_ 15 DQRLSEVDIQGSMAYAKALEKAGI-LTKTELEKILSGLEKIS-EEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLH 92 (449)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHH-HHHHHTCCCCCTTCCSHHHHHHHHHHHHHCGGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH-HHHhcCCcccCCccchHHHHHHHHHHHHhChhhhhcC
Confidence 444466667777 99999999999 99999999999986653 222221 23456888 8889999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 85 LGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 85 ~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
+|+||||+++|+++|++|+++..+.+.|..++++|.++|.+|++||||||||+
T Consensus 93 ~G~S~nD~~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~GrTH~ 145 (449)
T d1tjva_ 93 TGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYDHL 145 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred cCCCccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999997
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]}
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class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=8.4e-29 Score=202.49 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=103.8
Q ss_pred HHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCCHHHHHhH---HhhhcCch-HHHHHHHHHHcCcccCccccCCC
Q psy6016 14 INKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLDLDRAAAE---EKLTRHDV-MAHVHVYAEQCRKASSIIHLGAT 88 (137)
Q Consensus 14 ~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~~~~~~~~---~~~~~hdv-~a~~~~l~~~~g~~~~~lH~G~T 88 (137)
+..-+.+. ||+.||.++|+ ||++++++|.++|.++. .++..+ .....+|+ .+++..+.+.+|+.++|||+|+|
T Consensus 30 ~~~di~~~~Ah~~~l~~~gi-i~~~~~~~I~~al~~i~-~~~~~~~~~~~~~~ed~~~~ie~~l~~~~g~~~~~vH~G~S 107 (459)
T d1k62b_ 30 WEVDVQGSKAYSRGLEKAGL-LTKAEMDQILHGLDKVA-EEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGRS 107 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHH-HHHHHTCCCCCTTCCSHHHHHHHHHHHTTSSGGGGTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH-HHHhcCCcccCCcccchHHHHHHHHHHhhhhcccccCCCCC
Confidence 33335556 99999999999 99999999999986652 222221 12345677 56777899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 89 SCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 89 snDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
|||++||+++|++|+++..+.++|..++++|.++|++|++||||||||+
T Consensus 108 ~nD~~~Ta~~L~~r~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~ 156 (459)
T d1k62b_ 108 RNDQVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHL 156 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccceecceeec
Confidence 9999999999999999999999999999999999999999999999996
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]}
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class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: L-aspartate ammonia lyase
species: Bacillus sp., ym55-1 [TaxId: 1409]
Probab=99.93 E-value=3.5e-26 Score=187.16 Aligned_cols=127 Identities=15% Similarity=0.125 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc---------CCHHHH--HhHHhhhcCchHHHHHHHHHHcC
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK---------LDLDRA--AAEEKLTRHDVMAHVHVYAEQCR 77 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~---------~~~~~~--~~~~~~~~hdv~a~~~~l~~~~g 77 (137)
+...++.+..|| |+|++++++|+ ||++.+++|.+++++ |.+... ..+.....+....+.+.+.+.+|
T Consensus 38 ~~~~i~a~~~vk~A~A~an~~~G~-i~~~~a~aI~~a~~ei~~~~~~~~f~~d~~~~g~gt~~~~~~~e~i~~~~~~~~g 116 (462)
T d1j3ua_ 38 HPELIKSLGIVKKSAALANMEVGL-LDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMG 116 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTSCGGGCCSCSSCSGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCcccccceehHhhccchhhhhhhhhhhHHHHHHhcC
Confidence 456799999999 99999999999 999999999998853 221111 11122222222344556777777
Q ss_pred cc---------cCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 78 KA---------SSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 78 ~~---------~~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.. ++|||+|+|||||+|||++|++|+++..+.+.|..++++|.++|++|++||||||||+
T Consensus 117 ~~~g~~~~~~p~~~vH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~tvm~GRTHl 185 (462)
T d1j3ua_ 117 EEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHL 185 (462)
T ss_dssp CCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CcCCCccccccchhhhhccchhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhccccchhHHhC
Confidence 42 3479999999999999999999999999999999999999999999999999999997
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: L-aspartate ammonia lyase
species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.1e-24 Score=178.11 Aligned_cols=127 Identities=13% Similarity=0.137 Sum_probs=100.1
Q ss_pred cCh-HHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC----------CHHHH----HhHHhhhcCchHHHHHH
Q psy6016 8 QSY-SGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL----------DLDRA----AAEEKLTRHDVMAHVHV 71 (137)
Q Consensus 8 ~s~-~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~----------~~~~~----~~~~~~~~hdv~a~~~~ 71 (137)
|++ +..++.+..|+ |+|+++.++|+ ||++.+++|.++++++ .+... ......+.++|++...
T Consensus 41 ~~~~~~~i~a~~~vk~A~A~an~~~G~-i~~~~a~aI~~a~~evi~~g~~~~~f~~d~~q~g~gt~~nmn~nevia~~a- 118 (459)
T d1jswa_ 41 ISDIPEFVRGMVMVKKAAAMANKELQT-IPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIG- 118 (459)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHSTTTCSTTCCCCCSSCCSTTHHHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHhCCCchhhhcchhhhhhhhhhhhccchhHHHHHH-
Confidence 443 46799999999 99999999999 9999999999887431 11111 1112223345544433
Q ss_pred HHHHcCc---------ccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 72 YAEQCRK---------ASSIIHLGATSCYVGDNTDLIQIRDAFDILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 72 l~~~~g~---------~~~~lH~G~TsnDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.+..|. .+.|||+|+||||+++|+++|++|+++..+++.|..|+++|.++|++|++||||||||+
T Consensus 119 -~~~~g~~~g~~~~v~p~~~Vh~G~SsnDi~~Ta~~L~~~~~l~~L~~~L~~L~~~L~~~A~~~~~tvm~GRTHl 192 (459)
T d1jswa_ 119 -LELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQL 192 (459)
T ss_dssp -HHTTTSCCTTSCSSCCCCCCSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCEEECCGGG
T ss_pred -HHhcCCccCCccccchhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeeecHhhc
Confidence 233331 25789999999999999999999999999999999999999999999999999999996
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=2.1e-23 Score=170.47 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhccc---------CCHHHHHhH--Hh--hhcCchHHHHHHHHH
Q psy6016 9 SYSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMK---------LDLDRAAAE--EK--LTRHDVMAHVHVYAE 74 (137)
Q Consensus 9 s~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~---------~~~~~~~~~--~~--~~~hdv~a~~~~l~~ 74 (137)
-+...++.+..|+ |+|+++.++|+ ||++.+++|.+++++ |++.....+ +. .+.++|++... .+
T Consensus 38 ~~~~~i~a~~~vk~A~A~an~~lG~-i~~~~a~aI~~a~~ei~~g~~~~~f~~~~~q~g~gt~~nmn~nevia~~a--~~ 114 (460)
T d1vdka_ 38 MPLEIIRAYGMLKKAAARANLELGE-LPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRA--SE 114 (460)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHH--HH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhCcchhcCcchHhhhccccccccchhHHHHHHH--Hh
Confidence 3567899999999 99999999999 999999999998843 222222121 11 12234443332 33
Q ss_pred HcCc--------ccCccccCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 75 QCRK--------ASSIIHLGATSCYVGDNTDLIQIRDAFD-ILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 75 ~~g~--------~~~~lH~G~TsnDi~dTa~~L~lr~~l~-~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.+|. .+.|||+|+||||++|||++|++++++. .+++.|..|+++|.++|++|++||||||||+
T Consensus 115 ~~~~~~~~~~vhp~~~vh~g~SsnD~~~Ta~~l~~~~~l~~~l~~~L~~L~~~L~~~A~~~~~t~m~GRTHl 186 (460)
T d1vdka_ 115 ILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHL 186 (460)
T ss_dssp HTTCCTTSCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred hhcccccccccChhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCeeehhhhhc
Confidence 3431 2578999999999999999999999985 6899999999999999999999999999997
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=2.9e-22 Score=163.70 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccCC---------HHHHHh----HHhhhcCchHHHHHHHHHH
Q psy6016 10 YSGRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKLD---------LDRAAA----EEKLTRHDVMAHVHVYAEQ 75 (137)
Q Consensus 10 ~~~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~~---------~~~~~~----~~~~~~hdv~a~~~~l~~~ 75 (137)
+...++.+..|+ |+|+++.++|+ ||++.+++|.++|+++- +..... ....+.++|++... .+.
T Consensus 41 ~~~~i~a~~~vk~A~A~an~~lG~-l~~~~a~aI~~a~~ei~~g~~~~~f~~~~~q~g~gt~~nmn~nevia~~a--~~~ 117 (459)
T d1yfma_ 41 PLPLVHAFGVLKKSAAIVNESLGG-LDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRA--IEI 117 (459)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHH--HHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCccccccchHHhhccccccccchhhhhHHHH--HHH
Confidence 456899999999 99999999999 99999999999985321 100111 11122334443332 222
Q ss_pred cC----c----ccCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 76 CR----K----ASSIIHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 76 ~g----~----~~~~lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.| . .+.+||+|+||||+++||++|+++..+ ..+.+.|..|+++|.++|++|++||||||||+
T Consensus 118 ~~~~~~~~~vhp~d~v~~gqSsnD~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~kA~e~~~~im~GRTHl 188 (459)
T d1yfma_ 118 LGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHL 188 (459)
T ss_dssp ---------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred hhccccccccCcchhhhhccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeehhHhhC
Confidence 22 1 256899999999999999999998776 57899999999999999999999999999997
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1e-20 Score=154.29 Aligned_cols=125 Identities=17% Similarity=0.167 Sum_probs=96.2
Q ss_pred HHHHHHHHHH-HHHHHHhhcCCCCCHHHHHHHHHhcccC---------CHHHHHhH-HhhhcCchH-HHHHHHHHHcCc-
Q psy6016 12 GRINKVIKVY-SILFCSQELGLNITRDQIEELKDNMMKL---------DLDRAAAE-EKLTRHDVM-AHVHVYAEQCRK- 78 (137)
Q Consensus 12 ~~~~~~~~ve-A~a~al~~~Gi~i~~~~a~~I~~~l~~~---------~~~~~~~~-~~~~~hdv~-a~~~~l~~~~g~- 78 (137)
..++.+..|+ |+|+++.++|+ ||++++++|.++|+++ .+.....+ ...+.+++. .+.+.+.+.+|.
T Consensus 40 ~~i~a~~~vK~A~A~a~~~~Gl-i~~~~a~aI~~a~~eI~~~~~~~~f~~~~~~~g~g~~~~~~v~~vi~~~~~e~~g~~ 118 (456)
T d1fuoa_ 40 SLIHALALTKRAAAKVNEDLGL-LSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLANRASELLGGV 118 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTTTGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhCCcccccchHHHHhhcchhhcchhHHHHHHHHHHHhCcc
Confidence 4578889999 99999999999 9999999999998542 11111000 011223332 234446677663
Q ss_pred --------ccCccccCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q psy6016 79 --------ASSIIHLGATSCYVGDNTDLIQIRDAF-DILIPKLATCISHLAFFANKFKDLPTLGFTHL 137 (137)
Q Consensus 79 --------~~~~lH~G~TsnDi~dTa~~L~lr~~l-~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~ 137 (137)
.+.++|+|+||||+++|+++++.+..+ ..+.+.|..++++|.++|++|++||||||||+
T Consensus 119 ~~~~~~~~~~~~v~~~~s~~d~~~ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~GrTHl 186 (456)
T d1fuoa_ 119 RGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHL 186 (456)
T ss_dssp SSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEECCEETT
T ss_pred cccccccchhhHHHHhhhhhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCceeccHHhc
Confidence 256899999999999999999776666 67899999999999999999999999999997
