Psyllid ID: psy6065

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MAIQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNTGRES
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
maiqlppcpdsLKAIQHFLNVasehdnrdltVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEkkthrdndTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNClksgetpipgppesgegsegpslssqnsndqlpspprensnedvtpsfpaptssggtlpsppsmpqnlpgpsisgplipgpsipsfpspavtpsspstpapqpampalvtqpeqEISYIEAELINKCQKYIKFASsalnyddyKEAKSNLIKVLNILNTGRES
Flexible Loop (DISEMBL)
maiqlppcPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKalkidkssdGAKMLLLKLMDWLEQEkkthrdndtIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNTGRES
Low Complexity Region (SEG)
MAIQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKsgetpipgppesgegsegpslssQNSNDQLPSPPRENSNEDVTPSFpaptssggtlpsppsmpQNLpgpsisgplipgpsipsfpspavtpsspstpapqpampaLVTQPEQEISYIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNTGRES
Disordered region (IsUnstruct)
***********LKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQE*******DTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLK****************************************************************************************************************EISYIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILN*****
Disordered Region (DISOPRED)
******P**DSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKI****DG*KMLLLKLMDWLE***************TAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHN******************************************************************************************************************************KCQKYIKFASSALNYDDYKEAKSNLIKVLN*LNT****
Disordered Region (DISEMBL)
MAIQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIP*******************************************************PQNLPGPSISGPLIPGPSIPSF******************MPALVTQPEQEISYIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNTGRES
Disordered Region (DISPRO)
****LPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGE****************************************************************************************************************YIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNT****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNTGRES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q32L63	307	Vacuolar protein sorting-	yes	N/A	0.949	0.977	0.407	3e-60
Q9CR26	309	Vacuolar protein sorting-	yes	N/A	0.933	0.954	0.419	6e-58
Q9NP79	307	Vacuolar protein sorting-	yes	N/A	0.927	0.954	0.396	5e-56
Q5R5W5	307	Vacuolar protein sorting-	yes	N/A	0.927	0.954	0.396	1e-55
Q55B11	550	Vacuolar protein sorting-	yes	N/A	0.575	0.330	0.315	5e-22
O13703	389	Vacuolar protein sorting-	yes	N/A	0.617	0.501	0.287	4e-12
Q9AUE0	1950	Callose synthase 1 OS=Ara	no	N/A	0.389	0.063	0.333	5e-10
Q9SL03	1950	Callose synthase 2 OS=Ara	no	N/A	0.389	0.063	0.333	1e-09
Q9LYS6	1921	Putative callose synthase	no	N/A	0.417	0.068	0.275	5e-08
Q9LXT9	1955	Callose synthase 3 OS=Ara	no	N/A	0.433	0.070	0.296	1e-07

>sp|Q32L63|VTA1_BOVIN Vacuolar protein sorting-associated protein VTA1 homolog OS=Bos taurus GN=VTA1 PE=2 SV=1

 Score =  232 bits (591), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 127/312 (40%), Positives = 178/312 (57%), Gaps = 12/312 (3%)

Query: 5   LPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDW 64
           LPP P   K+IQH L  A EHD RD  V+Y+CRL+A+Q  +KID  +   +  L +LMD 
Sbjct: 7   LPPLPPQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSRLMDQ 66

Query: 65  LEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMD 124
           LE  KK   DN+ I  E    A++ENYALK+F +AD+ DRA  F+KN++K+FYTAS+L+D
Sbjct: 67  LEALKKQLGDNEAITQEIVGSAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLID 126

Query: 125 VLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGSEGPSLSSQNSNDQ 184
           V+  FGE +++  +++KYA+WKA YIHNCLK+GETP  GP    E +             
Sbjct: 127 VITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNVDVEEYEDAGATS 186

Query: 185 LPSPPRENSNEDVTPS-FPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPA 243
           LP+ P + S+    PS  P+ + +G  +P     P N P           P      S  
Sbjct: 187 LPTQPLQPSSSTYDPSNMPSSSYTGIQIPPGAHAPANTPAEV--------PHSTGVTSNT 238

Query: 244 VTPSSPSTPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKFASSALNYDDYKEAKSNL 303
           + P+  + PA  PA+ + V+Q +  ++    E   + QKY K+A SAL Y+D   A  NL
Sbjct: 239 IQPTPQTIPAIDPALFSTVSQGDIRLT---PEDFARAQKYCKYAGSALQYEDVSTAVQNL 295

Query: 304 IKVLNILNTGRE 315
            K L +L TGRE
Sbjct: 296 QKALKLLTTGRE 307

Involved in the endosomal multivesicular bodies (MVB) pathway. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Thought to be a cofactor of VPS4A/B, which catalyzes disassembles membrane-associated ESCRT-III assemblies. Involved in the sorting and down-regulation of EGFR.
Bos taurus (taxid: 9913)

>sp|Q9CR26|VTA1_MOUSE Vacuolar protein sorting-associated protein VTA1 homolog OS=Mus musculus GN=Vta1 PE=1 SV=1

 Score =  224 bits (571), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 128/305 (41%), Positives = 173/305 (56%), Gaps = 10/305 (3%)

Query: 12  LKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKT 71
            K+IQH L  A EHD RD  V+Y+CRL+A+Q  +KID  +   +  L KLMD LE  KK 
Sbjct: 14  FKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEALKKQ 73

Query: 72  HRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGE 131
             DN+ +  E    A++ENYALK+F +AD+ DRA  F+KN++K+FYTAS+L+DV+  FGE
Sbjct: 74  LGDNEAVTQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGE 133

Query: 132 TSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRE 191
            +++  +++KYA+WKA YIHNCLK+GETP  GP    E ++        +      PP+ 
Sbjct: 134 LTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEENDVEENEDVGATSLPTQPPQP 193

Query: 192 NSNEDVTPSFPAPTS-SGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPS 250
           +S+    PS  AP S SG  +P     P N P           P      S AV PS  +
Sbjct: 194 SSSSAYDPSNLAPGSYSGIQIPPGAHAPANTPAEV--------PHSTGVTSNAVQPSPQT 245

Query: 251 TPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNIL 310
            PA     P L T  + +I  +  E   + QKY K+A SAL Y+D   A  NL K L +L
Sbjct: 246 VPAAPAVDPDLYTASQGDIR-LTPEDFARAQKYCKYAGSALQYEDVGTAVQNLQKALRLL 304

Query: 311 NTGRE 315
            TGRE
Sbjct: 305 TTGRE 309

Involved in the endosomal multivesicular bodies (MVB) pathway. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Thought to be a cofactor of VPS4A/B, which catalyzes disassembles membrane-associated ESCRT-III assemblies (By similarity). Involved in the sorting and down-regulation of EGFR.

Mus musculus (taxid: 10090)

>sp|Q9NP79|VTA1_HUMAN Vacuolar protein sorting-associated protein VTA1 homolog OS=Homo sapiens GN=VTA1 PE=1 SV=1

 Score =  218 bits (555), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 12/305 (3%)

Query: 12  LKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKT 71
            K+IQH L  A EHD RD  V+Y+CRL+A+Q  +KID  +   +  L KLMD LE  KK 
Sbjct: 14  FKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEALKKQ 73

Query: 72  HRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGE 131
             DN+ I  E    A++ENYALK+F +AD+ DRA  F+KN++K+FYTAS+L+DV+  FGE
Sbjct: 74  LGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGE 133

Query: 132 TSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRE 191
            +++  +++KYA+WKA YIHNCLK+GETP  GP    E ++        +      P + 
Sbjct: 134 LTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENEDAGAASLPTQPTQP 193

Query: 192 NSNEDVTPS-FPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPS 250
           +S+    PS  P+   +G  +P     P N P           P      S  + P+  +
Sbjct: 194 SSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEV--------PHSTGVASNTIQPTPQT 245

Query: 251 TPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNIL 310
            PA  PA+   ++Q +  ++    E   + QKY K+A SAL Y+D   A  NL K L +L
Sbjct: 246 IPAIDPALFNTISQGDVRLT---PEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALKLL 302

Query: 311 NTGRE 315
            TGRE
Sbjct: 303 TTGRE 307

Involved in the endosomal multivesicular bodies (MVB) pathway. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Thought to be a cofactor of VPS4A/B, which catalyzes disassembles membrane-associated ESCRT-III assemblies. Involved in the sorting and down-regulation of EGFR (By similarity). Involved in HIV-1 budding.

Homo sapiens (taxid: 9606)

>sp|Q5R5W5|VTA1_PONAB Vacuolar protein sorting-associated protein VTA1 homolog OS=Pongo abelii GN=VTA1 PE=2 SV=1

 Score =  217 bits (552), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/305 (39%), Positives = 172/305 (56%), Gaps = 12/305 (3%)

Query: 12  LKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKT 71
            K+IQH L  A EHD RD  V+Y+CRL+A+Q  +KID  +   +  L KLMD LE  KK 
Sbjct: 14  FKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEALKKQ 73

Query: 72  HRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGE 131
             DN+ I  E    A++ENYALK+F +AD+ DRA  F+KN++K+FYTAS+L+DV+  FGE
Sbjct: 74  LGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGE 133

Query: 132 TSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRE 191
            +++  +++KYA+WKA YIHNCLK+GETP  GP    E ++        +      P + 
Sbjct: 134 LTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDVEENEDAGAASLPTQPTQP 193

Query: 192 NSNEDVTPS-FPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPS 250
           +S+    PS  P+   +G  +P     P N P           P      S  + P+  +
Sbjct: 194 SSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEV--------PHSTGVASNTIQPTPQT 245

Query: 251 TPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNIL 310
            PA  PA+   ++Q +  ++    E   + QKY K+A SAL Y+D   A  NL K L +L
Sbjct: 246 IPAIDPALFNTISQGDIRLT---PEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALKLL 302

Query: 311 NTGRE 315
            TGRE
Sbjct: 303 TTGRE 307

Involved in the endosomal multivesicular bodies (MVB) pathway. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. Thought to be a cofactor of VPS4A/B, which catalyzes disassembles membrane-associated ESCRT-III assemblies. Involved in the sorting and down-regulation of EGFR.

Pongo abelii (taxid: 9601)

>sp|Q55B11|VTA1_DICDI Vacuolar protein sorting-associated protein VTA1 homolog OS=Dictyostelium discoideum GN=vta1 PE=3 SV=1

 Score =  105 bits (261), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 97/184 (52%), Gaps = 2/184 (1%)

Query: 3   IQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKI-DKSSDGAKMLLLKL 61
           + L   P +LK I  +L  + + +  DL ++Y+CR+HA+Q A+ I  K       L + +
Sbjct: 1   MDLASLPPALKPIIPYLKQSQQLEKHDLLMAYYCRVHAIQMAMDIKQKMGASGSFLSIPI 60

Query: 62  MDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASI 121
           +  L+Q         + ++E     Y+E +A+K F +AD+ DRA   NK     FY+A +
Sbjct: 61  VKILDQGDADKAKLGSRLDEEDEAKYVEAFAMKAFSFADTQDRAGKANKATSTTFYSAFL 120

Query: 122 LMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGSEGPSLSSQNS 181
             +VL+  GE SE+++  KKYA W++  I+  +K+G  P P PP   +  EG +      
Sbjct: 121 FFNVLEHMGEVSEEVKLKKKYASWRSVDINTAIKNGVAPSP-PPSIDQNEEGGASGETEE 179

Query: 182 NDQL 185
           + QL
Sbjct: 180 DAQL 183

Involved in the endosomal multivesicular bodies (MVB) pathway. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins. Thought to be a cofactor of VPS4, which catalyzes the disassembly of membrane-associated ESCRT-III.

Dictyostelium discoideum (taxid: 44689)

>sp|O13703|VTA1_SCHPO Vacuolar protein sorting-associated protein vts1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vts1 PE=3 SV=2

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 14/209 (6%)

Query: 3   IQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKS-SDGAKMLLLKL 61
           IQ+   P  L++IQ F+   +E +  +  ++YW    A Q AL      S+  K  LL L
Sbjct: 2   IQIDTIPKELQSIQPFVRRFNELEAHNPVIAYWSLYWAAQMALSSSHGVSNECKDFLLSL 61

Query: 62  MDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASI 121
           ++ LE  +K   +N+ + +ET+A+AY+E+++L++   A   +R S   K  V+A+  A  
Sbjct: 62  IEHLEDLRKNLGENENVSDETSAKAYVESFSLEVLVQA---ERNSKNGKPDVQAYLAARD 118

Query: 122 LMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGSEGPSLSSQNS 181
            +++ + +G  +E I ++ K+ K +A  + N  +  +TP      S   +E    SS NS
Sbjct: 119 FLELSRIWGPPTEQITKSIKFCKLRALQVANPQRKAKTP------SNHATEELQQSSTNS 172

Query: 182 NDQLPSPP---RENSNEDVTPSFPAPTSS 207
              LP+       N++     SF  PT+S
Sbjct: 173 TT-LPTQEAAVETNASASHETSFALPTTS 200

Has a role in the formation of the multivesicular body (MVB). Required for the sorting of lipids to form intralumenal vesicles and for fluid-phase transport to the vacuole. Required for sorting several plasma membrane proteins into the MVB.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9AUE0|CALS1_ARATH Callose synthase 1 OS=Arabidopsis thaliana GN=CALS1 PE=1 SV=2

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 12/135 (8%)

Query: 9   PDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLK--LMDWLE 66
           P SL  I   L VA+E +  +  V+Y CR +A +KA ++D +S G  +   K  L+  LE
Sbjct: 36  PSSLVEIAPILRVANEVEASNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKTALLQRLE 95

Query: 67  QEKKT----HRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASIL 122
           +E +T     + +D    ++  Q Y + Y   L   AD  DRA      + KA+ TA++L
Sbjct: 96  RENETTLAGRQKSDAREMQSFYQHYYKKYIQALLNAADKADRA-----QLTKAYQTAAVL 150

Query: 123 MDVLQTFGETSEDIE 137
            +VL+   +T ED+E
Sbjct: 151 FEVLKAVNQT-EDVE 164

Involved in callose synthesis at the forming cell plate during cytokinesis. Not required for callose formation after wounding or pathogen attack. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: 4

>sp|Q9SL03|CALS2_ARATH Callose synthase 2 OS=Arabidopsis thaliana GN=CALS2 PE=2 SV=3

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 12/135 (8%)

Query: 9   PDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLK--LMDWLE 66
           P SL  I   L VA+E +  +  V+Y CR +A +KA ++D +S G  +   K  L+  LE
Sbjct: 36  PSSLVEIAPILRVANEVEASNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKTALLQRLE 95

Query: 67  QEKKT----HRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASIL 122
           +E +T     + +D    ++  Q Y + Y   L   AD  DRA      + KA+ TA++L
Sbjct: 96  RENETTLAGRQKSDAREMQSFYQHYYKKYIQALQNAADKADRA-----QLTKAYQTAAVL 150

Query: 123 MDVLQTFGETSEDIE 137
            +VL+   +T ED+E
Sbjct: 151 FEVLKAVNQT-EDVE 164

Involved in callose synthesis at the forming cell plate during cytokinesis. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: 4

>sp|Q9LYS6|CALS6_ARATH Putative callose synthase 6 OS=Arabidopsis thaliana GN=CALS6 PE=3 SV=2

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 6/138 (4%)

Query: 9   PDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLK--LMDWLE 66
           P SL +I   L VA+E +  +  V+Y CR HA +KA ++D +S G  +   K  L+  LE
Sbjct: 44  PSSLASIAPILRVANEIEKDNPRVAYLCRFHAFEKAHRMDATSSGRGVRQFKTYLLHRLE 103

Query: 67  QEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVL 126
           +E++  +      +    QAY +N+  K  +  ++  +     + + + +  AS+L DVL
Sbjct: 104 KEEEETKPQLAKNDPREIQAYYQNFYEKYIKEGETSRKP----EEMARLYQIASVLYDVL 159

Query: 127 QTFGETSEDIEQNKKYAK 144
           +T   + +   + ++YA+
Sbjct: 160 KTVVPSPKVDYETRRYAE 177

Probably involved in callose synthesis, but not required for callose formation after wounding or pathogen attack. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: 4

>sp|Q9LXT9|CALS3_ARATH Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=3

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 9   PDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLK--LMDWLE 66
           P SL  I   L VA+E ++ +  V+Y CR +A +KA ++D +S G  +   K  L+  LE
Sbjct: 39  PSSLVEIAPILRVANEVESSNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKTALLQRLE 98

Query: 67  QEKKTH-----RDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASI 121
           +E         + +D    ++  Q Y + Y   L   AD  DRA      + KA+ TA++
Sbjct: 99  REHDPTLMGRVKKSDAREMQSFYQHYYKKYIQALHNAADKADRA-----QLTKAYQTANV 153

Query: 122 LMDVLQTFGETS------EDIEQNKKYAKWKAAYI 150
           L +VL+    T       E +E   K A+    Y+
Sbjct: 154 LFEVLKAVNLTQSIEVDREILEAQDKVAEKTQLYV 188

Involved in callose synthesis at the forming cell plate during cytokinesis. During plant growth and development, callose is found as a transitory component of the cell plate in dividing cells, is a major component of pollen mother cell walls and pollen tubes, and is found as a structural component of plasmodesmatal canals.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
195135393	304	GI16795 [Drosophila mojavensis] gi|19391	0.939	0.976	0.490	4e-73
195442864	316	GK23648 [Drosophila willistoni] gi|19416	0.958	0.958	0.466	3e-72
194864924	315	GG14577 [Drosophila erecta] gi|190652958	0.946	0.949	0.468	1e-70
326381125	285	vacuolar protein sorting-associated prot	0.895	0.992	0.460	1e-70
195490494	316	GE20937 [Drosophila yakuba] gi|194179265	0.955	0.955	0.474	2e-70
24655474	316	CG7967 [Drosophila melanogaster] gi|7292	0.955	0.955	0.470	1e-69
157105669	330	hypothetical protein AaeL_AAEL014549 [Ae	0.943	0.903	0.462	1e-69
194747089	306	GF24976 [Drosophila ananassae] gi|190623	0.930	0.960	0.473	1e-69
114050853	311	vacuolar protein sorting-associated prot	0.958	0.974	0.493	4e-69
195012255	321	GH15517 [Drosophila grimshawi] gi|193897	0.943	0.928	0.467	3e-67

>gi|195135393|ref|XP_002012117.1| GI16795 [Drosophila mojavensis] gi|193918381|gb|EDW17248.1| GI16795 [Drosophila mojavensis]

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 157/320 (49%), Positives = 198/320 (61%), Gaps = 23/320 (7%)

Query: 3   IQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLM 62
           ++ PPCP+SLK+IQHFL +A EHD+RD+ ++YW RL+ALQ  LK    S     LLL +M
Sbjct: 1   MEFPPCPNSLKSIQHFLKLAQEHDSRDIVIAYWARLYALQIGLKASSQSAEETQLLLAIM 60

Query: 63  DWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASIL 122
           DWLEQ KKTH DN+ I N+ AAQA+IENYALKLF +AD  DR   F KNVVKA+Y++ +L
Sbjct: 61  DWLEQMKKTHADNEAITNDIAAQAHIENYALKLFLYADKQDREENFGKNVVKAYYSSGVL 120

Query: 123 MDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGP---PESGE-GSEGPS--L 176
            D+L TFGE SE+   N+KYAK+KAAYIHNCLK+GETPIPGP    ES E   E P+   
Sbjct: 121 YDILLTFGELSEEALHNRKYAKYKAAYIHNCLKNGETPIPGPFPDDESAELNGESPAGVK 180

Query: 177 SSQNSNDQLPSPPRENSNED-VTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPS 235
               +N   P  P  ++  D V PS PAP ++  T+    + P  LP P +         
Sbjct: 181 DEAGTNVTAPEEPSTDAQSDNVEPSSPAPQTTPPTVEEVLNNPNKLPSPPVE------EE 234

Query: 236 IPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKFASSALNYDD 295
            P    P V P+ P+    QPA+P  +T P+Q I+          QKY K+A SALNYDD
Sbjct: 235 KPGGFEPYVPPAQPNAAIFQPAVPVHIT-PDQMIT---------AQKYCKYAGSALNYDD 284

Query: 296 YKEAKSNLIKVLNILNTGRE 315
            K A  NL K L +L TG E
Sbjct: 285 VKTAIENLQKALKLLTTGAE 304

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195442864|ref|XP_002069166.1| GK23648 [Drosophila willistoni] gi|194165251|gb|EDW80152.1| GK23648 [Drosophila willistoni]

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 152/326 (46%), Positives = 194/326 (59%), Gaps = 23/326 (7%)

Query: 3   IQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLM 62
           ++ PPCP SLK+IQHFL +A EHDNRD+ ++YW RL+ALQ  LK    S     LLL +M
Sbjct: 1   MEFPPCPPSLKSIQHFLKLAQEHDNRDVIIAYWARLYALQVGLKASTQSPEETKLLLAIM 60

Query: 63  DWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASIL 122
           DWLEQ KK H DN+ + N+ AAQA+IENYALKLF +AD  DR   F KN+VKAFY++ +L
Sbjct: 61  DWLEQMKKQHADNEALTNDVAAQAHIENYALKLFLYADKQDREENFGKNMVKAFYSSGVL 120

Query: 123 MDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIP-------------GPPESGE 169
            D+LQTFGE SE+  QN+KYAKWKAAYIHNCLK+GETP P             G P SGE
Sbjct: 121 YDILQTFGELSEEATQNRKYAKWKAAYIHNCLKTGETPKPFAAPDDTEQEESAGNPASGE 180

Query: 170 GSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGP 229
           G EG ++  + S         +N+N+ V PS P    +  T     + P  LP P +   
Sbjct: 181 GDEGNNIGHEASGGGGDPAISDNANDAVQPSSPTTQITPPTAEEVLNNPNKLPSPPVEEE 240

Query: 230 LIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKFASS 289
             PG   P  P+    P++ +   P   +  +   P+Q I+          QKY K+A S
Sbjct: 241 K-PGGFEPYVPTAQPHPAAATIYQPIEPVAGVQITPDQMIT---------AQKYCKYAGS 290

Query: 290 ALNYDDYKEAKSNLIKVLNILNTGRE 315
           ALNYDD K A  NL K L +L+TG E
Sbjct: 291 ALNYDDVKTAIVNLQKALKLLSTGSE 316

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194864924|ref|XP_001971175.1| GG14577 [Drosophila erecta] gi|190652958|gb|EDV50201.1| GG14577 [Drosophila erecta]

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 154/329 (46%), Positives = 199/329 (60%), Gaps = 30/329 (9%)

Query: 3   IQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLM 62
           ++ PPCP SLK+IQHFL +A EHD RD+ ++YW RL+ALQ  LK    +     LLL +M
Sbjct: 1   MEFPPCPPSLKSIQHFLKLAQEHDTRDVVIAYWARLYALQVGLKASTQTGEETKLLLGIM 60

Query: 63  DWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASIL 122
           DWLEQ KK + +N+ I NE AAQA+IENYALKLF +AD  DR   F KNVVKAFY++ +L
Sbjct: 61  DWLEQMKKQYAENEAITNEVAAQAHIENYALKLFLYADKQDREENFGKNVVKAFYSSGVL 120

Query: 123 MDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGP-PESGEGSEGPSLSSQNS 181
            D+LQTFGE SE+   N+KYAKWKAAYIHNCLK+GETPIPGP P+  + +E   L  +N+
Sbjct: 121 YDILQTFGELSEEALHNRKYAKWKAAYIHNCLKNGETPIPGPLPDDDDEAE---LEGENA 177

Query: 182 NDQLPSPPRENSNEDVTPSFP----------APTSSGGTLPSPPSM---PQNLPGPSISG 228
           N    + P +       P  P          +PT+SG   P+   +   P  LP P +  
Sbjct: 178 NASADTSPEDAGAVAPAPYQPDPDAQQPAPSSPTTSGVVPPTAEEVLNNPNKLPSPPVDE 237

Query: 229 PLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQ--PEQEISYIEAELINKCQKYIKF 286
              PG  +P  P+    P++ +T   QP +P    Q  P+Q I+          QKY K+
Sbjct: 238 EK-PGGFVPYVPTAQPNPATAAT-IYQPIVPVAGVQITPDQMIT---------AQKYCKY 286

Query: 287 ASSALNYDDYKEAKSNLIKVLNILNTGRE 315
           A SALNYDD K A  NL K L +L+TG E
Sbjct: 287 AGSALNYDDVKTAIENLQKALKLLSTGSE 315

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326381125|ref|NP_001191949.1| vacuolar protein sorting-associated protein VTA1 homolog [Acyrthosiphon pisum]

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 144/313 (46%), Positives = 188/313 (60%), Gaps = 30/313 (9%)

Query: 4   QLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMD 63
           Q+P CP+SLK IQH L +A EHD++D  +SYWCRL+ALQ AL +DKSS  AKM L+ LMD
Sbjct: 3   QIPECPESLKKIQHHLKIALEHDSKDPVISYWCRLYALQAALTLDKSSKDAKMFLVSLMD 62

Query: 64  WLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILM 123
           WLE++K   +DND I NETAAQA+IENYA+KLF +AD MDR + +NKN+VK F+TA +LM
Sbjct: 63  WLEKQKNNLKDNDMITNETAAQAHIENYAIKLFNFADGMDRQANYNKNIVKLFFTAGLLM 122

Query: 124 DVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGSEGPSLSSQNSND 183
           DVL  FG+ SE+I   +KYAKWKA YIHNC+K+GETP PGPP +  G  G +  +Q  + 
Sbjct: 123 DVLSVFGDVSEEITNTQKYAKWKATYIHNCMKNGETPTPGPPNTESGQIGFNFPNQGEDI 182

Query: 184 QLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPA 243
           Q P+       ++  P  P   +      S P+  Q +   S   P    P++       
Sbjct: 183 QQPT-------DNCAPLTPTKHTYEDYPASNPNEYQQISNMSTISPTEVQPTV------- 228

Query: 244 VTPSSPSTPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKFASSALNYDDYKEAKSNL 303
                  +  P      +   P Q         I K QKY KFA+SAL YDD  E+ +NL
Sbjct: 229 -------SGRPILLRDGIQLSPSQ---------ITKAQKYCKFAASALTYDDVSESIANL 272

Query: 304 IKVLNILNTGRES 316
            K L +L TG +S
Sbjct: 273 QKALKLLTTGEDS 285

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195490494|ref|XP_002093164.1| GE20937 [Drosophila yakuba] gi|194179265|gb|EDW92876.1| GE20937 [Drosophila yakuba]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 155/327 (47%), Positives = 198/327 (60%), Gaps = 25/327 (7%)

Query: 3   IQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLM 62
           ++LPPCP SLK+IQHFL +A EHD RD+ ++YW RL+ALQ  LK    +     LLL +M
Sbjct: 1   MELPPCPPSLKSIQHFLKLAQEHDTRDVVIAYWARLYALQVGLKASTQTGEETKLLLGIM 60

Query: 63  DWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASIL 122
           DWLEQ KK + +N+ I NE AAQA+IENYALKLF +AD  DR   F KNVVKAFY++ +L
Sbjct: 61  DWLEQMKKQYAENEAITNEVAAQAHIENYALKLFLYADKQDREENFGKNVVKAFYSSGVL 120

Query: 123 MDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGP-PE-------SGEGSEGP 174
            D+LQTFGE SE+   N+KYAKWKAAYIHNCLK+GETPIPGP P+        GE +   
Sbjct: 121 YDILQTFGELSEEALHNRKYAKWKAAYIHNCLKNGETPIPGPLPDDDDEAELEGENANAS 180

Query: 175 SLSSQNSNDQLPSPPRENSNEDVTPSFPA-PTSSGGTLPSPPSM---PQNLPGPSISGPL 230
           + +S        +P       D  P  P+ PT+SG   P+   +   P  LP P +    
Sbjct: 181 ADTSPEDAAGAAAPAPYQPEPDAQPPAPSYPTASGVVPPTAEEVLNNPNKLPSPPVDEEK 240

Query: 231 IPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQ--PEQEISYIEAELINKCQKYIKFAS 288
            PG  +P  P+    P++ +T   QP +P    Q  P+Q I+          QKY K+A 
Sbjct: 241 -PGGFVPYVPTAQPNPATAAT-IYQPIVPVAGVQITPDQMIT---------AQKYCKYAG 289

Query: 289 SALNYDDYKEAKSNLIKVLNILNTGRE 315
           SALNYDD K A  NL K L +L+TG E
Sbjct: 290 SALNYDDVKTAIENLQKALKLLSTGSE 316

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24655474|ref|NP_647640.1| CG7967 [Drosophila melanogaster] gi|7292128|gb|AAF47540.1| CG7967 [Drosophila melanogaster] gi|15291409|gb|AAK92973.1| GH19706p [Drosophila melanogaster] gi|20151895|gb|AAM11307.1| RH70193p [Drosophila melanogaster] gi|220958646|gb|ACL91866.1| CG7967-PA [synthetic construct]

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 154/327 (47%), Positives = 197/327 (60%), Gaps = 25/327 (7%)

Query: 3   IQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLM 62
           ++ PPCP SLK+IQHFL +A EHD RD+ ++YW RL+ALQ  LK    +     LLL +M
Sbjct: 1   MEFPPCPPSLKSIQHFLKLAQEHDTRDVVIAYWARLYALQVGLKASTQTGEETKLLLGIM 60

Query: 63  DWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASIL 122
           DWLEQ KK + +N+ I NE AAQA+IENYALKLF +AD  DR   F KNVVKAFY++ +L
Sbjct: 61  DWLEQMKKQYAENEAITNEVAAQAHIENYALKLFLYADKQDREENFGKNVVKAFYSSGVL 120

Query: 123 MDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGP-PE-------SGEGSEGP 174
            D+LQTFGE SE+   N+KYAKWKAAYIHNCLK+GETPIPGP P+        GE +   
Sbjct: 121 YDILQTFGELSEEALHNRKYAKWKAAYIHNCLKNGETPIPGPLPDDDDEAELEGENANAS 180

Query: 175 SLSSQNSNDQLPSPPRENSNEDVTPSFP-APTSSGGTLPSPPSM---PQNLPGPSISGPL 230
           + +S        +P       D  P  P +PT+SG   P+   +   P  LP P +    
Sbjct: 181 ADTSPEDAAGAAAPAPYQPEPDSQPPAPSSPTTSGVVPPTAEEVLNNPNKLPSPPVDEEK 240

Query: 231 IPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQ--PEQEISYIEAELINKCQKYIKFAS 288
            PG  +P  P+    P++ +T   QP +P    Q  P+Q I+          QKY K+A 
Sbjct: 241 -PGGFVPYVPTAQPNPATAAT-IYQPIVPVAGVQITPDQMIT---------AQKYCKYAG 289

Query: 289 SALNYDDYKEAKSNLIKVLNILNTGRE 315
           SALNYDD K A  NL K L +L+TG E
Sbjct: 290 SALNYDDVKTAIENLQKALKLLSTGSE 316

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105669|ref|XP_001648971.1| hypothetical protein AaeL_AAEL014549 [Aedes aegypti] gi|108868965|gb|EAT33190.1| AAEL014549-PA [Aedes aegypti]

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 161/348 (46%), Positives = 200/348 (57%), Gaps = 50/348 (14%)

Query: 1   MAIQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLK 60
           MA  LP  P SLK I H+L  A EHD RD  VSYWCRL+ALQ  +KI+      +  L+ 
Sbjct: 1   MASNLPDVPASLKTISHYLKTAQEHDTRDPIVSYWCRLYALQLGMKINSQGVEERKFLIY 60

Query: 61  LMDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTAS 120
           +MDWLE  KK + DND I++E AAQAY+ENYAL+LF +AD  DRA  F KNVVKAFYTA 
Sbjct: 61  VMDWLETTKKANADNDCIIHEVAAQAYLENYALRLFLYADKQDRAGNFGKNVVKAFYTAG 120

Query: 121 ILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGSE-------- 172
           +L DV+QTFGE +E++ QN+KYAKWKA+YIHNCLK+GETP+PGP ++ E +E        
Sbjct: 121 MLYDVMQTFGELTEEVTQNRKYAKWKASYIHNCLKNGETPVPGPMKTDEDNELDNELAGL 180

Query: 173 GPSLSSQN-------SNDQLPSP---------PRENSNEDVTPSFPAPTSSGGTLPSPPS 216
           GP  S +N       SN Q  +P         P+    E      PAP SSG     PPS
Sbjct: 181 GPGPSERNDEPMAGPSNTQPQAPYPSMGFQSWPQPGGGEQP----PAPISSG-----PPS 231

Query: 217 MPQNL----PGPSISGPLIPGPSIPSFP----SPAVTPSSPSTPAPQPAMPALVTQPEQE 268
            P N     P  ++  P    PS P  P     P   P+  S   P P   A   Q    
Sbjct: 232 GPTNFVTNDPFSNVKAPTP--PSEPEKPPGGFQPYTGPAVTSGEVPAPVFNATGVQ---- 285

Query: 269 ISYIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNTGRES 316
              + A+ + K QKY K+A SALNY+D K A  NL K L +L TG++S
Sbjct: 286 ---LTADQLTKAQKYCKWAGSALNYEDIKTAIDNLQKALRLLQTGQDS 330

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194747089|ref|XP_001955985.1| GF24976 [Drosophila ananassae] gi|190623267|gb|EDV38791.1| GF24976 [Drosophila ananassae]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 154/325 (47%), Positives = 195/325 (60%), Gaps = 31/325 (9%)

Query: 3   IQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLM 62
           ++ PPCP SLK+IQHFL +A EHD+RD  ++YW RL+ALQ  LK    +     LLL +M
Sbjct: 1   MEFPPCPPSLKSIQHFLKLAQEHDSRDFVIAYWARLYALQVGLKASTQTAEETKLLLAIM 60

Query: 63  DWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASIL 122
           DWLEQ KK + DN+ + NE AAQA+IENYALKLF +AD  DR   F KNVVKAFY++ +L
Sbjct: 61  DWLEQVKKQYADNEAVTNEVAAQAHIENYALKLFLYADKQDREENFGKNVVKAFYSSGVL 120

Query: 123 MDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGSEGPSLSSQNSN 182
            D+LQTFGE SE+   N+KYAKWKAAYIHNCLK+GETPIPGP    +          N+N
Sbjct: 121 YDILQTFGELSEEALHNRKYAKWKAAYIHNCLKNGETPIPGPLPDDDED---EFGGDNTN 177

Query: 183 DQLPSPPRENSNEDVTPS----FPAPTSSGGTLPSPPSM------PQNLPGPSISGPLIP 232
               +PP E S  D  P+     PAP+       +PP+       P  LP P +     P
Sbjct: 178 ASAGTPPEEPSALDPPPAPYQLDPAPSDV-----TPPTAEEILDNPNKLPSPPVEEEK-P 231

Query: 233 GPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQ--PEQEISYIEAELINKCQKYIKFASSA 290
           G  +P  P+    P++ +T   QP +P    Q  P+Q I+          QKY K+A SA
Sbjct: 232 GGFVPYVPTAQPNPATAAT-IYQPIVPVAGVQITPDQMIT---------AQKYCKYAGSA 281

Query: 291 LNYDDYKEAKSNLIKVLNILNTGRE 315
           LNYDD K A  NL K L +L+TG E
Sbjct: 282 LNYDDVKTAIENLQKALKLLSTGSE 306

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114050853|ref|NP_001040410.1| vacuolar protein sorting-associated protein VTA1 homolog [Bombyx mori] gi|95102786|gb|ABF51334.1| 1110059p08rik-like protein [Bombyx mori] gi|411100660|gb|AFW03815.1| Vta1 [Bombyx mori]

 Score =  267 bits (683), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 155/314 (49%), Positives = 196/314 (62%), Gaps = 11/314 (3%)

Query: 5   LPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKID-KSSDGAKMLLLKLMD 63
           +P CP SLK+IQH+L  A+EHDNRD+ V+YWCRLHALQ  LKI  K +     +L+ LMD
Sbjct: 4   IPDCPMSLKSIQHYLKTAAEHDNRDVVVAYWCRLHALQTGLKITTKKTPEETKVLMALMD 63

Query: 64  WLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILM 123
           WLE+ KK+H DN+ I N+ AAQA++ENYALKLF +AD  DR   + KNVVKAFYTA ++ 
Sbjct: 64  WLEEIKKSHVDNEAISNDVAAQAHLENYALKLFLYADKQDREQNYGKNVVKAFYTAGMIY 123

Query: 124 DVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGP--PESGEGSEGPSLSSQNS 181
           DVL TFGE +++  QN+KYAKWKAAYIHNCLK+GETP+PGP   E  +G+ G S  +Q +
Sbjct: 124 DVLTTFGELTDEAAQNRKYAKWKAAYIHNCLKNGETPVPGPMQSEDDQGNAGMSSGNQEA 183

Query: 182 NDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPS 241
               P P    SN   TP   APTS   +LP P ++ +       +  L P P  P  P+
Sbjct: 184 PSDPPQPTDFTSNPPETPPI-APTSFNSSLPDPNAVLR------AASQLPPVPYTPD-PN 235

Query: 242 PAVTPSSPSTPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKFASSALNYDDYKEAKS 301
           P        T  PQP  P         +  +  + I K QKY K+ASSALNYDD K A  
Sbjct: 236 PGGFVPYDPTQQPQPPQPTTFHSDTTNLPTLTPDQIGKAQKYCKWASSALNYDDVKTAIY 295

Query: 302 NLIKVLNILNTGRE 315
           NL   L +L TGR+
Sbjct: 296 NLKSALELLQTGRD 309

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195012255|ref|XP_001983552.1| GH15517 [Drosophila grimshawi] gi|193897034|gb|EDV95900.1| GH15517 [Drosophila grimshawi]

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 157/336 (46%), Positives = 197/336 (58%), Gaps = 38/336 (11%)

Query: 3   IQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLM 62
           ++ P CP SLK+IQHFL +A EHD RD+ ++YW RL+ALQ  LK    +     LLL +M
Sbjct: 1   MEFPNCPASLKSIQHFLKLAQEHDTRDVVIAYWARLYALQVGLKASTQTAEETQLLLAIM 60

Query: 63  DWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASIL 122
           DWLEQ KK H DN+ + N+ AAQA+IENYALKLF +AD  DR   F KNVVKA+Y++ +L
Sbjct: 61  DWLEQMKKQHADNEALTNDVAAQAHIENYALKLFLYADKQDREENFGKNVVKAYYSSGVL 120

Query: 123 MDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGP---PESGE------GSEG 173
            D+L TFGE SE+   N+KYAK+KAAYIHNCLK+GETPIPGP    ES E      GS  
Sbjct: 121 YDILLTFGELSEEALHNRKYAKYKAAYIHNCLKNGETPIPGPFPDDESAELDNQPGGSND 180

Query: 174 PSLSSQNSN-DQLPSP--------PRENSNEDVTPSFPAPTSSGGTLPSPPSM---PQNL 221
            +  S NS    + SP        P+   +E V P+ PAPTS   T P+   +   P  L
Sbjct: 181 DNGGSSNSTPPDVSSPGAAAADDEPKPEDDEPVEPASPAPTSPSVTAPTAEEVLKNPNKL 240

Query: 222 PGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQ--PEQEISYIEAELINK 279
           P P +     PG   P  P+     + P+    QP +P    Q  P+Q I          
Sbjct: 241 PSPPVEEEK-PGGFEPYEPT-----AQPNPAIYQPIVPVAGVQITPDQMII--------- 285

Query: 280 CQKYIKFASSALNYDDYKEAKSNLIKVLNILNTGRE 315
            QKY K+A SALNYDD K A  NL K L +L+TG E
Sbjct: 286 AQKYCKYAGSALNYDDVKTAIENLQKALKLLSTGSE 321

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
UNIPROTKB|E1BRP3	307	VTA1 "Uncharacterized protein"	0.487	0.501	0.538	6e-50
ZFIN|ZDB-GENE-040426-2154	302	vta1 "Vps20-associated 1 homol	0.465	0.486	0.551	7.7e-50
UNIPROTKB|F1N318	307	VTA1 "Vacuolar protein sorting	0.620	0.638	0.428	2.6e-49
UNIPROTKB|Q32L63	307	VTA1 "Vacuolar protein sorting	0.620	0.638	0.428	2.6e-49
UNIPROTKB|Q9NP79	307	VTA1 "Vacuolar protein sorting	0.477	0.491	0.523	4.2e-49
MGI|MGI:1913451	309	Vta1 "Vps20-associated 1 homol	0.477	0.488	0.516	6.8e-49
RGD|1305031	251	Vta1 "Vps20-associated 1 homol	0.303	0.382	0.489	3.4e-32
UNIPROTKB|F1S6Z8	245	VTA1 "Uncharacterized protein"	0.376	0.485	0.504	1e-29
DICTYBASE|DDB_G0271488	550	vta1 "unknown" [Dictyostelium	0.484	0.278	0.318	5.3e-25
TAIR|locus:2116437	421	EXT-like "AT4G26750" [Arabidop	0.433	0.325	0.358	2.5e-21

UNIPROTKB|E1BRP3 VTA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 440 (159.9 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
 Identities = 83/154 (53%), Positives = 108/154 (70%)

Query:     2 AIQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKL 61
             A  LPP P   K+IQH L  A E D R+  V+Y+CRL+A+Q  +KID  +   +  L KL
Sbjct:     3 ATALPPLPPQFKSIQHHLRTAQELDKREPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKL 62

Query:    62 MDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASI 121
             MD LE  KK   DN+ I  E    A++ENYALK+F +AD+ DRA  F+KN++K+FYTAS+
Sbjct:    63 MDQLEAMKKQFGDNEAITQEIVGSAHVENYALKMFLYADNEDRAGQFHKNMIKSFYTASL 122

Query:   122 LMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLK 155
             L+DVL  FGE SE+  Q++KYA+WKAAYIHNCLK
Sbjct:   123 LIDVLTVFGELSEENVQHRKYARWKAAYIHNCLK 156

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040426-2154 vta1 "Vps20-associated 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 440 (159.9 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
 Identities = 81/147 (55%), Positives = 107/147 (72%)

Query:     9 PDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQE 68
             P  LKAIQH+L  A EH+ RD  V+Y+CRL+A+Q  +K+D  +   +  L+KLMD LE  
Sbjct:     4 PPQLKAIQHYLRTAQEHEKRDPVVAYYCRLYAMQTGMKLDSKTPECRKFLVKLMDQLEMM 63

Query:    69 KKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQT 128
             KK   DN++I  E    A+IENYALK+F +AD+ DR+  F+KN++K+FYT+S+L DVL  
Sbjct:    64 KKELGDNESISQEIVGNAHIENYALKMFLYADNEDRSERFHKNMIKSFYTSSLLFDVLSV 123

Query:   129 FGETSEDIEQNKKYAKWKAAYIHNCLK 155
             FGE SE+  Q +KYAKWKAAYIHNCLK
Sbjct:   124 FGELSEENLQQRKYAKWKAAYIHNCLK 150

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1N318 VTA1 "Vacuolar protein sorting-associated protein VTA1 homolog" [Bos taurus (taxid:9913)]

 Score = 431 (156.8 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
 Identities = 84/196 (42%), Positives = 116/196 (59%)

Query:     5 LPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDW 64
             LPP P   K+IQH L  A EHD RD  V+Y+CRL+A+Q  +KID  +   +  L +LMD 
Sbjct:     7 LPPLPPQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSRLMDQ 66

Query:    65 LEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMD 124
             LE  KK   DN+ I  E    A++ENYALK+F +AD+ DRA  F+KN++K+FYTAS+L+D
Sbjct:    67 LEALKKQLGDNEAITQEIVGSAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLID 126

Query:   125 VLQTFGETSEDIEQNKKYAKWKAAYIHNCLKXXXXXXXXXXXXXXXXXXXXXXXQNSNDQ 184
             V+  FGE +++  +++KYA+WKA YIHNCLK                             
Sbjct:   127 VITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNVDVEENEDAGATS 186

Query:   185 LPSPPRENSNEDVTPS 200
             LP+ P + S+    PS
Sbjct:   187 LPTQPLQPSSSTYDPS 202

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q32L63 VTA1 "Vacuolar protein sorting-associated protein VTA1 homolog" [Bos taurus (taxid:9913)]

 Score = 431 (156.8 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
 Identities = 84/196 (42%), Positives = 116/196 (59%)

Query:     5 LPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDW 64
             LPP P   K+IQH L  A EHD RD  V+Y+CRL+A+Q  +KID  +   +  L +LMD 
Sbjct:     7 LPPLPPQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSRLMDQ 66

Query:    65 LEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMD 124
             LE  KK   DN+ I  E    A++ENYALK+F +AD+ DRA  F+KN++K+FYTAS+L+D
Sbjct:    67 LEALKKQLGDNEAITQEIVGSAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLID 126

Query:   125 VLQTFGETSEDIEQNKKYAKWKAAYIHNCLKXXXXXXXXXXXXXXXXXXXXXXXQNSNDQ 184
             V+  FGE +++  +++KYA+WKA YIHNCLK                             
Sbjct:   127 VITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNVDVEEYEDAGATS 186

Query:   185 LPSPPRENSNEDVTPS 200
             LP+ P + S+    PS
Sbjct:   187 LPTQPLQPSSSTYDPS 202

GO:0010008 "endosome membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q9NP79 VTA1 "Vacuolar protein sorting-associated protein VTA1 homolog" [Homo sapiens (taxid:9606)]

 Score = 429 (156.1 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
 Identities = 79/151 (52%), Positives = 107/151 (70%)

Query:     5 LPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDW 64
             LPP P   K+IQH L  A EHD RD  V+Y+CRL+A+Q  +KID  +   +  L KLMD 
Sbjct:     7 LPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQ 66

Query:    65 LEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMD 124
             LE  KK   DN+ I  E    A++ENYALK+F +AD+ DRA  F+KN++K+FYTAS+L+D
Sbjct:    67 LEALKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLID 126

Query:   125 VLQTFGETSEDIEQNKKYAKWKAAYIHNCLK 155
             V+  FGE +++  +++KYA+WKA YIHNCLK
Sbjct:   127 VITVFGELTDENVKHRKYARWKATYIHNCLK 157

GO:0015031 "protein transport" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

MGI|MGI:1913451 Vta1 "Vps20-associated 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 428 (155.7 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
 Identities = 78/151 (51%), Positives = 107/151 (70%)

Query:     5 LPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDW 64
             LPP P   K+IQH L  A EHD RD  V+Y+CRL+A+Q  +KID  +   +  L KLMD 
Sbjct:     7 LPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQ 66

Query:    65 LEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMD 124
             LE  KK   DN+ +  E    A++ENYALK+F +AD+ DRA  F+KN++K+FYTAS+L+D
Sbjct:    67 LEALKKQLGDNEAVTQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLID 126

Query:   125 VLQTFGETSEDIEQNKKYAKWKAAYIHNCLK 155
             V+  FGE +++  +++KYA+WKA YIHNCLK
Sbjct:   127 VITVFGELTDENVKHRKYARWKATYIHNCLK 157

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005768 "endosome" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1305031 Vta1 "Vps20-associated 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 268 (99.4 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
 Identities = 47/96 (48%), Positives = 71/96 (73%)

Query:    60 KLMDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTA 119
             +++ W    KK   DN+ +  E    A++ENYALK+F +AD+ DRA  F+KN++K+FYTA
Sbjct:     4 EILWWPTTLKKQLGDNEAVTQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTA 63

Query:   120 SILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLK 155
             S+L+DV+  FGE +++  +++KYA+WKA YIHNCLK
Sbjct:    64 SLLIDVITVFGELTDENVKHRKYARWKATYIHNCLK 99

GO:0005737 "cytoplasm" evidence=IEA;ISO

UNIPROTKB|F1S6Z8 VTA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 60/119 (50%), Positives = 86/119 (72%)

Query:    37 RLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLF 96
             RL+A+Q  +KID  +   +  L KLMD LE  KK   DN+ +  E    A++ENYALK+F
Sbjct:     1 RLYAMQTGMKIDSKTPECRKFLSKLMDQLEALKKQLGDNEAVTQEIVGSAHLENYALKMF 60

Query:    97 QWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLK 155
              +AD+ DRA  F+KN++K+FYTAS+L+DV+  FGE +++  +++KYA+WKA YIHNCLK
Sbjct:    61 LYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLK 119

GO:0005737 "cytoplasm" evidence=IEA

DICTYBASE|DDB_G0271488 vta1 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 236 (88.1 bits), Expect = 5.3e-25, Sum P(3) = 5.3e-25
 Identities = 49/154 (31%), Positives = 84/154 (54%)

Query:     3 IQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKI-DKSSDGAKMLLLKL 61
             + L   P +LK I  +L  + + +  DL ++Y+CR+HA+Q A+ I  K       L + +
Sbjct:     1 MDLASLPPALKPIIPYLKQSQQLEKHDLLMAYYCRVHAIQMAMDIKQKMGASGSFLSIPI 60

Query:    62 MDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASI 121
             +  L+Q         + ++E     Y+E +A+K F +AD+ DRA   NK     FY+A +
Sbjct:    61 VKILDQGDADKAKLGSRLDEEDEAKYVEAFAMKAFSFADTQDRAGKANKATSTTFYSAFL 120

Query:   122 LMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLK 155
               +VL+  GE SE+++  KKYA W++  I+  +K
Sbjct:   121 FFNVLEHMGEVSEEVKLKKKYASWRSVDINTAIK 154

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

TAIR|locus:2116437 EXT-like "AT4G26750" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
 Identities = 52/145 (35%), Positives = 81/145 (55%)

Query:    13 KAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKS--SDGAKMLLLKLMDWLEQEKK 70
             +A+  +L  A E    +  V+Y+CRL+A+++ LKI +S  +     +L+ L++ LE++KK
Sbjct:     9 RALLPYLQRADELQKHEPLVAYYCRLYAMERGLKIPQSERTKTTNSILMSLINQLEKDKK 68

Query:    71 THRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFG 130
             +     T+  +     ++E +AL +F  AD  DRA   +    K FY ASI  ++L  FG
Sbjct:    69 SL----TLSPDD--NMHVEGFALSVFAKADKQDRAGRADLGTAKTFYAASIFFEILSQFG 122

Query:   131 ETSEDIEQNKKYAKWKAAYIHNCLK 155
                 DIEQ  KYA WKAA I   +K
Sbjct:   123 PVPPDIEQKHKYAAWKAADIRKAIK 147

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R5W5	VTA1_PONAB	No assigned EC number	0.3967	0.9272	0.9543	yes	N/A
Q9CR26	VTA1_MOUSE	No assigned EC number	0.4196	0.9335	0.9546	yes	N/A
Q9NP79	VTA1_HUMAN	No assigned EC number	0.3967	0.9272	0.9543	yes	N/A
Q32L63	VTA1_BOVIN	No assigned EC number	0.4070	0.9493	0.9771	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	316
pfam04652	315	pfam04652, DUF605, Vta1 like	8e-94
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	9e-05
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	4e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	0.002
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	0.002

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score =  280 bits (718), Expect = 8e-94
 Identities = 118/316 (37%), Positives = 152/316 (48%), Gaps = 18/316 (5%)

Query: 13  KAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTH 72
           K+IQ +L  A E +  D  V+Y+CRL+A+Q  LKI          L KL+D LE  KK  
Sbjct: 1   KSIQPYLKRAQELEKADPVVAYYCRLYAVQLILKIKLKDGEVTKFLTKLLDQLEAFKKEL 60

Query: 73  RDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGET 132
            DND I +E AAQAY+EN+ALKLF  AD  DRA    KN  K FY AS   +VL  FGE 
Sbjct: 61  GDNDAITDEVAAQAYVENFALKLFNRADKQDRAGRATKNTAKTFYAASTFFEVLAIFGEL 120

Query: 133 SEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPP-----ESGEGSEGPSLSSQNSNDQLPS 187
            E++ Q  KYAKWKAA IH  LK GE P PGPP     E  + +   S +S    D  P+
Sbjct: 121 DEEVAQKIKYAKWKAARIHKALKEGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPA 180

Query: 188 PPRENSNEDVTPSFPAPTSSGGT-----LPSPPSMPQNLPGPSISGPLIPGPSIPSFPSP 242
               +     +P  P+  S           S P  P +    +         +    P P
Sbjct: 181 SASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGP 240

Query: 243 AVTPSSP-------STPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKFASSALNYDD 295
           A  P  P       ST  P P   +    P   I+ ++ + I K QK+ K+A SALN++D
Sbjct: 241 AAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGIT-LDDDAIAKAQKHAKWAISALNFED 299

Query: 296 YKEAKSNLIKVLNILN 311
              A   L K L +L 
Sbjct: 300 VPTAVKELRKALKLLG 315

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 9/113 (7%)

Query: 153 CLKSGETPIPGPPESGEGSEG------PSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTS 206
           C      PI  P    E S        P  +S +S+ +  SP    S+    P+  +P +
Sbjct: 255 CPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRA 314

Query: 207 SGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMP 259
           S  +  S  S   +    S S     G ++   PSP+ +PS    P P     
Sbjct: 315 SSSSSSSRES---SSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSS 364

Length = 1352

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 4/109 (3%)

Query: 160 PIPGPPESGEGSEGPSLSSQNSNDQLPSP---PRENSNEDVTPSFPAPTSSGGTLPSPPS 216
           P P P ++   +  P+++  ++  + P     P   ++E   P+ PAP  +    P P  
Sbjct: 42  PAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPA-PAPHQAASRAPDPAV 100

Query: 217 MPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQP 265
            PQ    P          +  +  +PA   +S ++  P PA     + P
Sbjct: 101 APQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPP 149

Length = 566

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 29/114 (25%), Positives = 38/114 (33%), Gaps = 4/114 (3%)

Query: 160  PIPGPPESGEGSEGPS--LSSQNSNDQLPSPPRENSNEDVTP-SFPAPTSSGGTLPSPPS 216
              P P     GS  P   +  +  +    + P   +   V   + PA + S  +   PP 
Sbjct: 2844 GPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPD 2903

Query: 217  MPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEIS 270
             P+  P P    P  P P  P  P P   P  P  P P  A P        E S
Sbjct: 2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA-PTTDPAGAGEPS 2956

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 26/112 (23%), Positives = 34/112 (30%), Gaps = 7/112 (6%)

Query: 156 SGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTP-------SFPAPTSSG 208
               P P    S      PS S  +            S+   +        +  +  SS 
Sbjct: 278 PSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSR 337

Query: 209 GTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPA 260
           G   SP   P   P PS   P     S    P P+  PSSP+  A +P    
Sbjct: 338 GAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRR 389

Length = 1352

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 177 SSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSI 236
           S++ S +   S P + S      + PAP           + P N   P+++    P P++
Sbjct: 151 SAELSQNSGQSVPLDTSTTTDPATTPAPA------APVDTTPTNSQTPAVATA--PAPAV 202

Query: 237 PSFPSPAVTPSSPSTPAPQPAMPALVTQPE 266
               +  V PS  +        PA    P+
Sbjct: 203 DPQQNAVVAPSQANVDTAATPAPAAPATPD 232

Length = 331

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 2/125 (1%)

Query: 156 SGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPA--PTSSGGTLPS 213
               P P  P +  G+     +   +         + + +    +  A  P+ +      
Sbjct: 681 PPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP 740

Query: 214 PPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISYIE 273
            P  P + P P+ +    P P  P+  +       PS P+ +  M         +    +
Sbjct: 741 LPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRD 800

Query: 274 AELIN 278
           AE + 
Sbjct: 801 AEEVA 805

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 28/111 (25%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 156 SGETPIPGPPESGEGSEGPSLSSQNSNDQLP-SPPRENSNEDVTPS----FPAPTSSGGT 210
               P PGP      +E  S  + + +   P SP RE S     PS     P        
Sbjct: 67  PPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASP 126

Query: 211 LPSPPS-MPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPA 260
            PSP   + + L      GP        +  SPA   S  ++   Q A+P 
Sbjct: 127 PPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASS-RQAALPL 176

Length = 1352

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 159 TPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMP 218
            P P        +  P+ ++       P+P     +           S      +P + P
Sbjct: 409 APAPAAAA-PAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPA-AAPSAQP 466

Query: 219 QNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVT 263
              P  +      P P+ P+ P+PA  P++P+ PA         T
Sbjct: 467 APAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511

Length = 824

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 34/123 (27%), Positives = 47/123 (38%), Gaps = 12/123 (9%)

Query: 157 GETPIPG---PPESGEGSEGP-SLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLP 212
           G+  IPG   P   G  +  P S +S  +     S    +S+   T   P+ +   G L 
Sbjct: 546 GDAWIPGKGVPYIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLG 605

Query: 213 SPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISYI 272
           SPP+ P  +  PS S P           SP+ TPSSP +     +       PE  I   
Sbjct: 606 SPPATPSKIVSPSTSPP------ASHLGSPSTTPSSPESSIKVASTET--ASPESSIKVA 657

Query: 273 EAE 275
             E
Sbjct: 658 STE 660

Length = 670

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 29/114 (25%), Positives = 38/114 (33%), Gaps = 2/114 (1%)

Query: 154 LKSGETPIPGPPESGEGSEGPSLSSQNSNDQLPSP-PRENSNEDVTPSFPAPTSSGGTLP 212
           LK   +PIP PP S   S     +     +    P P   SN                L 
Sbjct: 380 LKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPL- 438

Query: 213 SPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPE 266
           SP +  ++L  P+   P  P    PS  S +  P+ P T     A  A    P 
Sbjct: 439 SPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPA 492

Length = 576

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
KOG0917|consensus	338		100.0
PF04652	380	DUF605: Vta1 like; InterPro: IPR006745 This family	100.0
KOG0916|consensus	1679		96.24
KOG1924|consensus	1102		95.95
KOG1924|consensus	1102		88.35

>KOG0917|consensus

Probab=100.00  E-value=7.9e-92  Score=650.09  Aligned_cols=302  Identities=45%  Similarity=0.686  Sum_probs=243.1

Q ss_pred             CCCCCCCCchhhhHHHHHHHhhcccCCchHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHhhhhcCCcchhhhHH
Q psy6065           3 IQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTIMNET   82 (316)
Q Consensus         3 ~~l~~vP~~LK~I~p~Lk~A~Ele~~dPvVAYyCrlYAlq~~lkl~~~~~E~~~fl~~LLd~LE~~K~~l~~~eai~~e~   82 (316)
                      +.+|++|+.  +|+||||+|+||+++||||||||||||+|.|||+++++.|||+||+.||||||++|+|++|||+|++++
T Consensus         1 m~~p~~pa~--si~~~l~~a~e~~k~dpvvayycrlyamq~gmKid~qT~e~rk~lsgLm~~lealkkqlaDneaitne~   78 (338)
T KOG0917|consen    1 MPLPPLPAQ--SIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSQTPECRKFLSGLMDQLEALKKQLADNEAITNEI   78 (338)
T ss_pred             CCCCCCChH--HHHHHHHHHHhhcccccHHHHHHHHHHHHhcccCCccCHHHHHHHHHHHHHHHHHHHHhcchhhhhhch
Confidence            357888888  899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy6065          83 AAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIP  162 (316)
Q Consensus        83 ~a~ayvenfAlklF~~AD~~dRag~~~k~~~k~F~aAs~L~dVL~~Fgel~ee~~~k~KYAKwkA~~I~k~lk~Ge~P~p  162 (316)
                      ++++||||||||||++||++||+|+|+|+|+|+||+|++|||||.+||||++|+.++||||||||+|||||||+||+|+|
T Consensus        79 ~aqaHiE~fAlklF~~ADKqdragr~dk~vvkaFYtA~~~~dILs~FGel~e~~l~~rKYAkWKat~I~~clk~G~~p~P  158 (338)
T KOG0917|consen   79 VAQAHIENFALKLFLYADKQDRAGRFDKNVVKAFYTASLLIDILSVFGELTEENLKHRKYAKWKATYIHNCLKNGETPQP  158 (338)
T ss_pred             HHHHHHHHHHHHHHHhhchhhhhcccchhHHHHHHHHHHHHHHHHHhcCCChHHHhhhHHhHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC-CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCC---------
Q psy6065         163 GPPESGEGS-EGPSLSSQNSN-DQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNL------PGPS---------  225 (316)
Q Consensus       163 gp~~~~~~~-e~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~------~~~~---------  225 (316)
                      |+.++|+++ +.++.+..+.+ ...+.||+.++|    |.  +..+..|...++|++|...      ++++         
T Consensus       159 g~~~deD~d~di~~~~~~s~d~~P~~tGp~~~sy----p~--Py~p~p~~q~p~p~~p~~~~yiS~~~S~ns~~qs~~s~  232 (338)
T KOG0917|consen  159 GPVGDEDDDNDIEENEDASADSLPTQTGPTQPSY----PS--PYDPSPYHQDPMPSGPYTGIYISHEPSPNSLPQSYPSF  232 (338)
T ss_pred             CCCCCcccccccCccccccCCCCCCCCCCCCCCC----CC--CCCCCCCCCCCCCCCCCCcceeecccCccccccccccc
Confidence            999988875 32222221111 233335666654    11  2223344444455554321      1111         


Q ss_pred             -----CCCCCCCCCCCCCC-----CCCCCCCCC-----CCCCCCCC--C-CCCcc-cCCccccccCCHHHHHHHHHHhhH
Q psy6065         226 -----ISGPLIPGPSIPSF-----PSPAVTPSS-----PSTPAPQP--A-MPALV-TQPEQEISYIEAELINKCQKYIKF  286 (316)
Q Consensus       226 -----~~~p~~p~~~~~~~-----~~p~~~p~~-----~p~p~~~~--~-~p~~~-~~~~~~~~~lt~~~~~~aqK~~K~  286 (316)
                           .+.|  |+++++.+     +++++..++     ++.|++||  . ++..+ ....+|+ ++|+|+|++|||||||
T Consensus       233 s~s~~~S~p--P~~pa~~nnP~p~ySst~~ap~ps~f~~~~P~~qP~~a~d~~~~qPV~~~g~-qptpE~faea~K~~ky  309 (338)
T KOG0917|consen  233 SESSLPSTP--PGAPAPANNPAPVYSSTGVAPNPSTFFTIQPTPQPIPAIDPALFQPVSQGGV-QPTPEDFAEAQKYCKY  309 (338)
T ss_pred             ccccCCCCC--CCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCC-ccCHHHHHHHHHHHHH
Confidence                 3446  77766633     111111111     11233333  3 55555 5668898 9999999999999999


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHhhcCCC
Q psy6065         287 ASSALNYDDYKEAKSNLIKVLNILNTGRE  315 (316)
Q Consensus       287 A~SAL~yeDv~tAi~nL~kAL~lL~tg~e  315 (316)
                      |+|||+||||+|||+||+|||+||+||+|
T Consensus       310 A~sAl~yedVstavenL~KaL~lLt~~s~  338 (338)
T KOG0917|consen  310 AGSALQYEDVSTAVENLQKALKLLTTGSE  338 (338)
T ss_pred             hhhhcchHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999986

>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised

Probab=100.00  E-value=4.5e-73  Score=551.30  Aligned_cols=159  Identities=48%  Similarity=0.758  Sum_probs=130.3

Q ss_pred             hhhHHHHHHHhhcccCCchHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHhhhhcCCcchhhhHHHHHHHHHHHH
Q psy6065          13 KAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENYA   92 (316)
Q Consensus        13 K~I~p~Lk~A~Ele~~dPvVAYyCrlYAlq~~lkl~~~~~E~~~fl~~LLd~LE~~K~~l~~~eai~~e~~a~ayvenfA   92 (316)
                      |.|.|||+||+||++++|||||||||||||+||++..+++||+.||+.|||+||++|++++++++|.|++++++|||+||
T Consensus         1 k~i~~~l~~a~e~~~~~p~v~Y~c~~ya~~~~l~~~~~~~e~~~~~~~Ll~~lE~~K~~~~~~~~~~~~~~~~~~v~~fa   80 (380)
T PF04652_consen    1 KSISPFLKRAQELEKRDPVVAYYCRLYAVEQILKLKLRSKECRQFLTSLLDKLEKMKAELGDNEAILDDVAAQAYVENFA   80 (380)
T ss_dssp             --HHHHHHHHHHHHHCTHHHHHHHHHHHHHHHTT-TT--HHHHHHHHHHHHHHHHHHHCT---CHHC-HHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHhhcCCEEhHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHhhhccCcHHhhcCHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy6065          93 LKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGS  171 (316)
Q Consensus        93 lklF~~AD~~dRag~~~k~~~k~F~aAs~L~dVL~~Fgel~ee~~~k~KYAKwkA~~I~k~lk~Ge~P~pgp~~~~~~~  171 (316)
                      |+||++||++||+|++|++|+++||||++|||||.+||+|++|+.+|||||||||+||+||||+|+.|++|+..+++++
T Consensus        81 ~~~f~~a~~~~~~~~~~~~~~~~f~~a~~~~~~l~~f~~~~~~~~~k~kyak~~a~~i~k~~~~g~~p~~~~~~~~~~~  159 (380)
T PF04652_consen   81 LKLFNRADKEDRAGRATKQTAKTFYAASTFFEVLNIFGELDEEIEEKIKYAKWKAARIAKALKEGEDPNPGPPLEEEEE  159 (380)
T ss_dssp             HHHHHHHHHHHHSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-----------------
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhCCCChHHhhceeeeeeeHhhhHHHHHCCCCCCCCCccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998776664

; PDB: 2RKK_B 2RKL_B 3MHV_A.

>KOG0916|consensus

Probab=96.24  E-value=0.0013  Score=73.55  Aligned_cols=70  Identities=26%  Similarity=0.389  Sum_probs=54.3

Q ss_pred             CCCCchh-hhHHHHHHHhhcccCCchHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHhhhhcCCcc
Q psy6065           7 PCPDSLK-AIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDND   76 (316)
Q Consensus         7 ~vP~~LK-~I~p~Lk~A~Ele~~dPvVAYyCrlYAlq~~lkl~~~~~E~~~fl~~LLd~LE~~K~~l~~~e   76 (316)
                      .+|+++- .|+|+++.|++++..+|.|+|.||.|+.+.-|.-.++++++++|.+.+|...+..+..+...+
T Consensus        30 ~~~~s~~~~i~pilr~a~~i~~~~p~~a~l~~~~~~e~~~D~~s~gr~v~qf~~~~~~~~~~~~~~~~~~~  100 (1679)
T KOG0916|consen   30 GLPSSLYDDIAPILRVANEIEQQNPRVAYLCRFHAFEKRMDPTSSGRGVRQFKTLDLNSYTSLGDSLAKSD  100 (1679)
T ss_pred             cCCcccccccchhhhccccccccCchhhhccccchHhhcCCCCCCcchhhhhhhhhccccCcccccccccc
Confidence            4666654 599999999999999999999999999999444447899999999999944333333344433

>KOG1924|consensus

Probab=95.95  E-value=0.88  Score=49.46  Aligned_cols=19  Identities=26%  Similarity=0.370  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q psy6065         111 NVVKAFYTASILMDVLQTF  129 (316)
Q Consensus       111 ~~~k~F~aAs~L~dVL~~F  129 (316)
                      ++++.=-+-..|+.||+++
T Consensus       393 n~vkdT~aE~yfLSILQhl  411 (1102)
T KOG1924|consen  393 NTVKDTGAEPYFLSILQHL  411 (1102)
T ss_pred             HhhhhccccchHHHHHHHH
Confidence            4444444445566666654

>KOG1924|consensus

Probab=88.35  E-value=2.6  Score=46.03  Aligned_cols=7  Identities=43%  Similarity=0.444  Sum_probs=3.3

Q ss_pred             HHHHHHH
Q psy6065         146 KAAYIHN  152 (316)
Q Consensus       146 kA~~I~k  152 (316)
                      ||+.+.|
T Consensus       475 kA~e~~k  481 (1102)
T KOG1924|consen  475 KAAELEK  481 (1102)
T ss_pred             HHHHHHH
Confidence            4554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	316
2lxl_A	183	Lip5(mit)2 Length = 183		8e-41
2lxm_A	168	Lip5-chmp5 Length = 168		9e-41

>pdb|2LXL|A Chain A, Lip5(mit)2 Length = 183

Iteration: 1
 Score =  164 bits (414), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 103/144 (71%)
Query: 12  LKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKT 71
            K+IQH L  A EHD RD  V+Y+CRL+A+Q  +KID  +   +  L KLMD LE  KK 
Sbjct: 14  FKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEALKKQ 73
Query: 72  HRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGE 131
             DN+ I  E    A++ENYALK+F +AD+ DRA  F+KN++K+FYTAS+L+DV+  FGE
Sbjct: 74  LGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGE 133
Query: 132 TSEDIEQNKKYAKWKAAYIHNCLK 155
            +++  +++KYA+WKA YIHNCLK
Sbjct: 134 LTDENVKHRKYARWKATYIHNCLK 157

>pdb|2LXM|A Chain A, Lip5-chmp5 Length = 168

Iteration: 1
 Score =  163 bits (413), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 75/144 (52%), Positives = 103/144 (71%)
Query: 12  LKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKT 71
            K+IQH L  A EHD RD  V+Y+CRL+A+Q  +KID  +   +  L KLMD LE  KK 
Sbjct: 14  FKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEALKKQ 73
Query: 72  HRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGE 131
             DN+ I  E    A++ENYALK+F +AD+ DRA  F+KN++K+FYTAS+L+DV+  FGE
Sbjct: 74  LGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGE 133
Query: 132 TSEDIEQNKKYAKWKAAYIHNCLK 155
            +++  +++KYA+WKA YIHNCLK
Sbjct: 134 LTDENVKHRKYARWKATYIHNCLK 157

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
2rkk_A	168	Vacuolar protein sorting-associated protein VTA1;	1e-42
2rkl_A	53	Vacuolar protein sorting-associated protein VTA1;	3e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-06
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae} Length = 168

 Score =  144 bits (363), Expect = 1e-42
 Identities = 23/159 (14%), Positives = 57/159 (35%), Gaps = 21/159 (13%)

Query: 13  KAIQHFLNVASEHDNRDL-TVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKT 71
                 +  A + D   L  + Y+ +L+A++  L  +  S     L  +L+D +E  KK 
Sbjct: 4   SNAARVVATAKDFDKVGLGIIGYYLQLYAVELILSEEDRSQEMTALATELLDTIEAFKKE 63

Query: 72  HRDNDT--------------IMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFY 117
                               I ++  A+ Y+ N+ + L+       +   ++  + ++ +
Sbjct: 64  IGGESEAEDSDKSLHVMNTLIHDQEKAKIYMLNFTMSLYNEKLKQLKDGPWDVMLKRSLW 123

Query: 118 TASILMDVL------QTFGETSEDIEQNKKYAKWKAAYI 150
               L   +           ++  +++  KY K   + +
Sbjct: 124 CCIDLFSCILHLWKENISETSTNSLQKRIKYCKIYLSKL 162

>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A Length = 53

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 273 EAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNT 312
            A  I + QK  K+A SALNY+D   AK  L K L++LN+
Sbjct: 13  RASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLLNS 52

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 52.8 bits (126), Expect = 6e-08
 Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 3/111 (2%)

Query: 157 GETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPS 216
           G +       SG    G  +   +++    +     +      + P P       P+  +
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVIPSASVT-SAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60

Query: 217 MPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQ 267
            P  + G S+   ++ GP+ P   + ++ P+      P P  PA       
Sbjct: 61  PPDTVTGDSVLQRILRGPTGP--GTTSLAPAVRYGRQPGPEAPASAPPAAG 109

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 47.4 bits (112), Expect = 3e-06
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 159 TPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMP 218
           + +  P  S   +    L++ +    +P P             P  T +G ++       
Sbjct: 19  SHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPA-PAAGNPPDTVTGDSVLQRI--- 74

Query: 219 QNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQP 265
             L GP+  G     P++     P     + + PA   A+P L   P
Sbjct: 75  --LRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 165  PESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGP 224
            P    GSEG             SP +   +   T  F +  S G    + PS   + PG 
Sbjct: 1507 PLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYG-LTSPSYSPSSPGY 1565

Query: 225  SISGPLIPGPSIPSFPSPAVTPSSPS----TPAPQPAMPA 260
            S S   +P     S  SP+ +P+SPS    +P+  P  P+
Sbjct: 1566 STSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1605

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 1/109 (0%)

Query: 157 GETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPS 216
           G+   P    +         ++  S  Q+  PP+          F  P            
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH-QQIDQ 75

Query: 217 MPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQP 265
              ++    +    +  P+    P   V   +P     QP       QP
Sbjct: 76  ATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQP 124

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 17/101 (16%), Positives = 28/101 (27%)

Query: 158  ETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSM 217
            E  I    +  +G   P  +     +       E     +  S      +GG      + 
Sbjct: 1456 EQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGAD 1515

Query: 218  PQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAM 258
                  P  +    P        SP  +P+SP+     PA 
Sbjct: 1516 YGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAY 1556

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 13/117 (11%)

Query: 156  SGETPIPGPPESGEGSEGPSLSSQNSNDQLPSP-PRENSNEDVTPSFPAPTSSGGTLPSP 214
                  P  P  G  S G S +S   +   P+  P   S    +PS+ +PTS   +  SP
Sbjct: 1524 GAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1582

Query: 215  ---PSMPQNLPGPSISGPLIPGPSIPSFP----SPAVTPSS----PSTPAPQPAMPA 260
               P+ P   P      P  P  S  S      SP+ +P+S    P++P+  P  P+
Sbjct: 1583 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1639

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 30/214 (14%), Positives = 59/214 (27%), Gaps = 69/214 (32%)

Query: 13  KAIQHFLNVASEHDNR----DLTV-------------SYWCR---------LHALQKALK 46
             I+  LNV    + R     L+V               W           ++ L K   
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 47  IDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAY---------------IENY 91
           ++K     K   + +   +  E K   +N+  ++ +    Y               ++ Y
Sbjct: 417 VEKQP---KESTISIPS-IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 92  ALKLFQW-------ADSMDRASTFNK-------------NVVKAFYTASILMDVLQTFGE 131
               +          +  +R + F               +   A+  +  +++ LQ    
Sbjct: 473 ---FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 132 TSEDIEQNK-KYAKWKAAYIHNCLKSGETPIPGP 164
               I  N  KY +   A +    K  E  I   
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
2lxl_A	183	Vacuolar protein sorting-associated protein VTA1;	100.0
2rkk_A	168	Vacuolar protein sorting-associated protein VTA1;	100.0
2rkl_A	53	Vacuolar protein sorting-associated protein VTA1;	99.77

>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A

Probab=100.00  E-value=7.8e-65  Score=452.58  Aligned_cols=171  Identities=51%  Similarity=0.855  Sum_probs=158.7

Q ss_pred             CCC--CCCCCCCchhhhHHHHHHHhhcccCCchHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHhhhhcCCcchh
Q psy6065           1 MAI--QLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTI   78 (316)
Q Consensus         1 m~~--~l~~vP~~LK~I~p~Lk~A~Ele~~dPvVAYyCrlYAlq~~lkl~~~~~E~~~fl~~LLd~LE~~K~~l~~~eai   78 (316)
                      |+.  +||+||++||+|.|||+||+||++++|+|||||||||+|+||+++++++|+++|++.|||+||++|++++++|++
T Consensus         1 ~~~~~~l~~vP~~LK~I~p~L~~A~Ele~~~PvVaY~Cr~yA~e~~l~l~~~~~e~~~f~~~LLd~LE~~K~~~~~~dai   80 (183)
T 2lxl_A            1 MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEALKKQLGDNEAI   80 (183)
T ss_dssp             CCCCCCCCCCCGGGSSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCSCCTTHHHHHHHHHHHHHHHHHHHCSCHHH
T ss_pred             CCCCCCCCCCChhHHhHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHhccchhHH
Confidence            553  999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy6065          79 MNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGE  158 (316)
Q Consensus        79 ~~e~~a~ayvenfAlklF~~AD~~dRag~~~k~~~k~F~aAs~L~dVL~~Fgel~ee~~~k~KYAKwkA~~I~k~lk~Ge  158 (316)
                      +|++++++|||+||++||++||++||+|+++++|+++||||++|||||++||+|++|+.+|+|||||||+||+||||+|+
T Consensus        81 ~~~~~~~ayve~fAlklF~~Ad~~dRa~~~t~~~~k~F~aA~~f~eVL~~fg~l~~e~~~k~KYAKwkA~~I~kalk~G~  160 (183)
T 2lxl_A           81 TQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGE  160 (183)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHCCCCHHHHHhHHHHHHhHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q psy6065         159 TPIPGPPESGEGS  171 (316)
Q Consensus       159 ~P~pgp~~~~~~~  171 (316)
                      +|+|||++++++.
T Consensus       161 ~P~pgp~~~~~~~  173 (183)
T 2lxl_A          161 TPQAGPVGIEEDN  173 (183)
T ss_dssp             CCC----------
T ss_pred             CCCCCCCCCcccc
Confidence            9999999877764

>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-49  Score=349.01  Aligned_cols=140  Identities=16%  Similarity=0.268  Sum_probs=131.9

Q ss_pred             hhhHHHHHHHhhcccC-CchHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHhhhhcCCcch--------------
Q psy6065          13 KAIQHFLNVASEHDNR-DLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDT--------------   77 (316)
Q Consensus        13 K~I~p~Lk~A~Ele~~-dPvVAYyCrlYAlq~~lkl~~~~~E~~~fl~~LLd~LE~~K~~l~~~ea--------------   77 (316)
                      ++|.|||+||.||+++ +|+|||||||||||+||+++++++|++.|++.|||+||++|++++++|+              
T Consensus         4 ~~i~p~l~rA~Ele~~~~PvVaYyCrlYave~iL~~~~~s~e~~~~l~~LlD~LE~~K~~~~~~e~~~~~~~~~~~~~~~   83 (168)
T 2rkk_A            4 SNAARVVATAKDFDKVGLGIIGYYLQLYAVELILSEEDRSQEMTALATELLDTIEAFKKEIGGESEAEDSDKSLHVMNTL   83 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHTTC-----------CTTTTHH
T ss_pred             chHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccccchhhhhhh
Confidence            4699999999999999 9999999999999999999999999999999999999999999999988              


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhcccccHHHHHHHHH-HHHHHHHHhhhcCCc-----HHHHHHHHHHHHHHHHHH
Q psy6065          78 IMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYT-ASILMDVLQTFGETS-----EDIEQNKKYAKWKAAYIH  151 (316)
Q Consensus        78 i~~e~~a~ayvenfAlklF~~AD~~dRag~~~k~~~k~F~a-As~L~dVL~~Fgel~-----ee~~~k~KYAKwkA~~I~  151 (316)
                      |+|++++++|||||||+||++||++||+|++|++++|+||| |.+|++||++||+++     +|+.+|+|||||||+||+
T Consensus        84 i~d~~~a~a~ve~FAlklF~~Ad~~drag~~~k~~~k~fy~ta~~F~avl~~fg~~~~~~~~~e~~~k~KYaKw~aa~I~  163 (168)
T 2rkk_A           84 IHDQEKAKIYMLNFTMSLYNEKLKQLKDGPWDVMLKRSLWCCIDLFSCILHLWKENISETSTNSLQKRIKYCKIYLSKLA  163 (168)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999995 666778999999999     999999999999999999


Q ss_pred             H
Q psy6065         152 N  152 (316)
Q Consensus       152 k  152 (316)
                      |
T Consensus       164 K  164 (168)
T 2rkk_A          164 K  164 (168)
T ss_dssp             T
T ss_pred             H
Confidence            9

>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A

Probab=99.77  E-value=1.7e-19  Score=129.81  Aligned_cols=42  Identities=45%  Similarity=0.597  Sum_probs=39.6

Q ss_pred             cCCHHHHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhhc
Q psy6065         271 YIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNT  312 (316)
Q Consensus       271 ~lt~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~t  312 (316)
                      .+++++|++||||||||+|||+||||+|||+||++||+||++
T Consensus        11 ~~~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~lL~~   52 (53)
T 2rkl_A           11 MDRASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLLNS   52 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhc
Confidence            356899999999999999999999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00