Psyllid ID: psy6071

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MSHSNFNEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLHLIWLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEMSLHSMEVVNR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHcccccccHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHcccccccccccccccccHccccccccccccccEEEEEccccccccEEEEccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHEEEccccHHHcHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHcccccccccEEEEcc
Coil and Loop (DISEMBL)
MSHSNFNEQTAYKVAEELLtktsgpgqlnhssplvnqyykpeflrlvpplhliwlnlvdpsehkiaydstmcvsnsagVEAKKLMTRAFKSALTLQQQQHLLAELQhdsklvyhigltpaklpdlvennPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEMSLHSMEVVNR
Flexible Loop (DISEMBL)
mshsnfneQTAYKVAEELLTKTsgpgqlnhsspLVNQYYKPEFLRLVPPLHLIWLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEMSLHSMEVVNR
Low Complexity Region (SEG)
MSHSNFNEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLHLIWLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSaltlqqqqhllaelqhDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEMSLHSMEVVNR
Disordered region (IsUnstruct)
*********************************LVNQYYKPEFLRLVPPLHLIWLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNM************
Disordered Region (DISOPRED)
**********AYKVAE*****************LVNQYYKPEFLRLVPPLHLIWLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEMSLHSMEVVNR
Disordered Region (DISEMBL)
********QTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLHLIWLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEMSLHSMEVVNR
Disordered Region (DISPRO)
****************ELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLHLIWLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEMSLHSMEVVNR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSHSNFNEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLHLIWLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEMSLHSMEVVNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q9CWN7	505	UPF0760 protein C2orf29 h	yes	N/A	0.886	0.324	0.564	5e-51
B0BNA9	504	UPF0760 protein C2orf29 h	yes	N/A	0.886	0.325	0.564	9e-51
Q9UKZ1	510	UPF0760 protein C2orf29 O	yes	N/A	0.886	0.321	0.558	2e-50
A4QP78	445	UPF0760 protein C2orf29 h	yes	N/A	0.886	0.368	0.541	9e-49
Q1ZXI2	642	UPF0760 protein DDB_G0279	yes	N/A	0.562	0.161	0.438	3e-15

>sp|Q9CWN7|CB029_MOUSE UPF0760 protein C2orf29 homolog OS=Mus musculus GN=D1Bwg0212e PE=2 SV=1

 Score =  200 bits (508), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 101/179 (56%), Positives = 128/179 (71%), Gaps = 15/179 (8%)

Query: 2   SHSNFNEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLH-----LIWLN 56
           S+S F+   A ++ E L+   SGP       P +  +++PEF+R  PPLH     L WLN
Sbjct: 247 SNSGFDSSVASRITESLV---SGP------KPPIESHFRPEFIRPPPPLHICEDELAWLN 297

Query: 57  LVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIG 116
             +P EH I +D +MCV NS GVE K++M +AFKS L+  QQ  LL EL+ D KLVYHIG
Sbjct: 298 PTEP-EHAIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIG 356

Query: 117 LTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEM 175
           LTPAKLPDLVENNPL+AIE+LLKL+QS+ ITEYFSVLVNM+MSLHSMEVVN +   +++
Sbjct: 357 LTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDL 415

Mus musculus (taxid: 10090)

>sp|B0BNA9|CB029_RAT UPF0760 protein C2orf29 homolog OS=Rattus norvegicus PE=2 SV=1

 Score =  199 bits (506), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 101/179 (56%), Positives = 128/179 (71%), Gaps = 15/179 (8%)

Query: 2   SHSNFNEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLH-----LIWLN 56
           S+S F+   A ++ E L+   SGP       P +  +++PEF+R  PPLH     L WLN
Sbjct: 246 SNSAFDSSVASRITESLV---SGP------KPPIESHFRPEFIRPPPPLHICEDELAWLN 296

Query: 57  LVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIG 116
             +P EH I +D +MCV NS GVE K++M +AFKS L+  QQ  LL EL+ D KLVYHIG
Sbjct: 297 PTEP-EHAIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIG 355

Query: 117 LTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEM 175
           LTPAKLPDLVENNPL+AIE+LLKL+QS+ ITEYFSVLVNM+MSLHSMEVVN +   +++
Sbjct: 356 LTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDL 414

Rattus norvegicus (taxid: 10116)

>sp|Q9UKZ1|CB029_HUMAN UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29 PE=1 SV=1

 Score =  198 bits (503), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 128/179 (71%), Gaps = 15/179 (8%)

Query: 2   SHSNFNEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLH-----LIWLN 56
           S+S F+   A ++ E L+   SGP       P +  +++PEF+R  PPLH     L WLN
Sbjct: 252 SNSGFDSSVASQITEALV---SGP------KPPIESHFRPEFIRPPPPLHICEDELAWLN 302

Query: 57  LVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIG 116
             +P +H I +D +MCV NS GVE K++M +AFKS L+  QQ  LL EL+ D KLVYHIG
Sbjct: 303 PTEP-DHAIQWDKSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIG 361

Query: 117 LTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEM 175
           LTPAKLPDLVENNPL+AIE+LLKL+QS+ ITEYFSVLVNM+MSLHSMEVVN +   +++
Sbjct: 362 LTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDL 420

Homo sapiens (taxid: 9606)

>sp|A4QP78|CB029_DANRE UPF0760 protein C2orf29 homolog OS=Danio rerio GN=zgc:163002 PE=2 SV=1

 Score =  192 bits (489), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 97/179 (54%), Positives = 126/179 (70%), Gaps = 15/179 (8%)

Query: 2   SHSNFNEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPL-----HLIWLN 56
           S+S F+   A ++ E L+T   GP       P +  +++PEF+R  PPL      L WLN
Sbjct: 187 SNSGFDSSVANQITESLVT---GP------RPPLESHFRPEFIRPTPPLLVCEDELCWLN 237

Query: 57  LVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIG 116
             +P EH++ +D +MCV N  GVE K++M +AFKS L+  QQ  LL EL+ D KLVYHIG
Sbjct: 238 PCEP-EHRVQWDRSMCVRNGTGVEIKRIMAKAFKSPLSAAQQTQLLGELEKDLKLVYHIG 296

Query: 117 LTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEM 175
           LTPAKLPDLVENNPL+AIE+LLKL+ S+ ITEYFSVLVNM+MSLHSMEVVN +   +++
Sbjct: 297 LTPAKLPDLVENNPLVAIEMLLKLMSSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDL 355

Danio rerio (taxid: 7955)

>sp|Q1ZXI2|CB029_DICDI UPF0760 protein DDB_G0279005 OS=Dictyostelium discoideum GN=DDB_G0279005 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 62/105 (59%), Gaps = 1/105 (0%)

Query: 65  IAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPD 124
           I   +T    NS  +  + LMT+A K  L   Q   +  E+  D KL Y+ GLTP  LP 
Sbjct: 404 IPSPTTTTSYNSKKI-VRDLMTKAIKGRLKKSQILQIKNEMDIDPKLAYYSGLTPKNLPF 462

Query: 125 LVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSV 169
           LVENN  +AI+ LLKLI S    ++F  L++MEM+  SMEVVN++
Sbjct: 463 LVENNTQVAIDTLLKLINSPDFKDHFQTLISMEMNFRSMEVVNAL 507

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
350413883	454	PREDICTED: UPF0760 protein C2orf29-like	0.902	0.367	0.620	5e-55
340710095	454	PREDICTED: UPF0760 protein C2orf29-like	0.902	0.367	0.620	1e-54
383853704	454	PREDICTED: UPF0760 protein C2orf29-like	0.897	0.365	0.601	3e-53
307169756	453	Uncharacterized protein C2orf29-like pro	0.897	0.366	0.590	3e-53
380026778	454	PREDICTED: UPF0760 protein C2orf29-like	0.902	0.367	0.604	5e-53
328793042	454	PREDICTED: UPF0760 protein C2orf29-like	0.902	0.367	0.604	6e-53
156554509	458	PREDICTED: UPF0760 protein C2orf29 homol	0.772	0.312	0.664	1e-51
307200667	453	Uncharacterized protein C2orf29-like pro	0.897	0.366	0.6	1e-50
327286398	449	PREDICTED: UPF0760 protein C2orf29-like	0.886	0.365	0.569	4e-50
242004454	408	conserved hypothetical protein [Pediculu	0.870	0.394	0.645	5e-50

>gi|350413883|ref|XP_003490141.1| PREDICTED: UPF0760 protein C2orf29-like [Bombus impatiens]

 Score =  219 bits (557), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 113/182 (62%), Positives = 132/182 (72%), Gaps = 15/182 (8%)

Query: 1   MSHSNFNE--QTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLH-----LI 53
           M HS   E  + A K   E+LT         +  PL +Q Y+PEFLRLVPPL+     L 
Sbjct: 184 MDHSKVTEIDKNATKNMTEVLTA--------NDPPLCSQSYQPEFLRLVPPLYRSVDELP 235

Query: 54  WLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVY 113
           W N+ DPS+  I YD+ MCVSN AG EA++LM +AFKS LTLQQQQHL+ EL  D KLVY
Sbjct: 236 WFNVTDPSQFTIEYDTNMCVSNCAGAEARRLMGKAFKSVLTLQQQQHLVNELDRDPKLVY 295

Query: 114 HIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNM 173
           HIGLTP KLPDLVENNPLIAIEVLLKL+QS+ ITEYFSVLVNMEMSLHSMEVVN +   +
Sbjct: 296 HIGLTPGKLPDLVENNPLIAIEVLLKLMQSSQITEYFSVLVNMEMSLHSMEVVNRLTTTV 355

Query: 174 EM 175
           ++
Sbjct: 356 DL 357

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710095|ref|XP_003393632.1| PREDICTED: UPF0760 protein C2orf29-like [Bombus terrestris]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/182 (62%), Positives = 133/182 (73%), Gaps = 15/182 (8%)

Query: 1   MSHSNFNE--QTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLH-----LI 53
           M HS   E  + A K   E+LT         +  PL +Q Y+PEFLRLVPPL+     L 
Sbjct: 184 MDHSKVTEIDKNATKNMTEVLTA--------NDPPLCSQSYQPEFLRLVPPLYRSVDELP 235

Query: 54  WLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVY 113
           W N+ +PS+  I YD+TMCVSN AG EA++LM +AFKS LTLQQQQHL+ EL  D KLVY
Sbjct: 236 WFNITEPSQFTIEYDTTMCVSNFAGAEARRLMGKAFKSVLTLQQQQHLVNELDKDPKLVY 295

Query: 114 HIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNM 173
           HIGLTP KLPDLVENNPLIAIEVLLKL+QS+ ITEYFSVLVNMEMSLHSMEVVN +   +
Sbjct: 296 HIGLTPGKLPDLVENNPLIAIEVLLKLMQSSQITEYFSVLVNMEMSLHSMEVVNRLTTTV 355

Query: 174 EM 175
           ++
Sbjct: 356 DL 357

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853704|ref|XP_003702362.1| PREDICTED: UPF0760 protein C2orf29-like [Megachile rotundata]

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 110/183 (60%), Positives = 130/183 (71%), Gaps = 17/183 (9%)

Query: 1   MSHSNFNE---QTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLH-----L 52
           M HS   E    TA  + E L++         +  PL +Q Y PEFLRL PPL+     L
Sbjct: 184 MDHSKVTEIDKNTAKSITEVLIS---------NDPPLCSQSYHPEFLRLAPPLYRSVDEL 234

Query: 53  IWLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLV 112
            W N+ +PS+  I YD+ MCVSN AG EA++LM +AFKS LTLQQQQHL+ EL  D KLV
Sbjct: 235 SWFNVTEPSQFTIEYDTNMCVSNCAGAEARRLMGKAFKSVLTLQQQQHLVNELDRDPKLV 294

Query: 113 YHIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVN 172
           YHIGLTP KLPDLVENNPLIAIEVLLKL+QS+ ITEYFSVLVNMEMSLHSMEVVN +   
Sbjct: 295 YHIGLTPGKLPDLVENNPLIAIEVLLKLMQSSQITEYFSVLVNMEMSLHSMEVVNRLTTT 354

Query: 173 MEM 175
           +++
Sbjct: 355 VDL 357

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169756|gb|EFN62314.1| Uncharacterized protein C2orf29-like protein [Camponotus floridanus]

 Score =  213 bits (542), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 108/183 (59%), Positives = 130/183 (71%), Gaps = 17/183 (9%)

Query: 1   MSHSN---FNEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLH-----L 52
           M HS    F+E T   + E L+             PL  Q Y PEFLRLVPPL+     +
Sbjct: 183 MDHSKETEFDETTVRNITETLIVG---------DPPLCKQSYHPEFLRLVPPLYHSINEI 233

Query: 53  IWLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLV 112
            W N+ +P++  I YD++MCVSN AG EA+KLM +AFK  LTL QQQHL+ EL++D KLV
Sbjct: 234 AWFNVTEPTQFTIEYDASMCVSNCAGAEARKLMGKAFKGVLTLPQQQHLVNELENDPKLV 293

Query: 113 YHIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVN 172
           YHIGLTP KLPDLVENNPLIAIEVLLKL+QS+ ITEYFSVLVNMEMSLHSMEVVN +   
Sbjct: 294 YHIGLTPCKLPDLVENNPLIAIEVLLKLMQSSQITEYFSVLVNMEMSLHSMEVVNRLTTT 353

Query: 173 MEM 175
           +++
Sbjct: 354 VDL 356

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026778|ref|XP_003697120.1| PREDICTED: UPF0760 protein C2orf29-like [Apis florea]

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 110/182 (60%), Positives = 131/182 (71%), Gaps = 15/182 (8%)

Query: 1   MSHSNFNE--QTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLH-----LI 53
           M HS   E  + A K   E+L        + +  PL +Q Y+PEFLRL PPL+     L 
Sbjct: 184 MDHSKITEIDKNATKNMTEIL--------IVNDPPLCSQSYQPEFLRLAPPLYRSVDELP 235

Query: 54  WLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVY 113
           W N+ +PS+  I YD+ MCVSN AG EA++LM +AFKS LTLQQQQHL+ EL  D KLVY
Sbjct: 236 WFNVTEPSQFTIEYDTNMCVSNCAGAEARRLMGKAFKSVLTLQQQQHLVNELDRDPKLVY 295

Query: 114 HIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNM 173
           HIGLTP KLPDLVENNPLIAIEVLLKL+QS+ ITEYFSVLVNMEMSLHSMEVVN +   +
Sbjct: 296 HIGLTPGKLPDLVENNPLIAIEVLLKLMQSSQITEYFSVLVNMEMSLHSMEVVNRLTTTV 355

Query: 174 EM 175
           ++
Sbjct: 356 DL 357

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793042|ref|XP_624811.3| PREDICTED: UPF0760 protein C2orf29-like [Apis mellifera]

 Score =  212 bits (539), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 110/182 (60%), Positives = 131/182 (71%), Gaps = 15/182 (8%)

Query: 1   MSHSNFNE--QTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLH-----LI 53
           M HS   E  + A K   E+L        + +  PL +Q Y+PEFLRL PPL+     L 
Sbjct: 184 MDHSKVTEIDKNATKNMTEIL--------IVNDPPLCSQSYQPEFLRLAPPLYRSVDELP 235

Query: 54  WLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVY 113
           W N+ +PS+  I YD+ MCVSN AG EA++LM +AFKS LTLQQQQHL+ EL  D KLVY
Sbjct: 236 WFNVTEPSQFTIEYDTNMCVSNCAGAEARRLMGKAFKSVLTLQQQQHLVNELDRDPKLVY 295

Query: 114 HIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNM 173
           HIGLTP KLPDLVENNPLIAIEVLLKL+QS+ ITEYFSVLVNMEMSLHSMEVVN +   +
Sbjct: 296 HIGLTPGKLPDLVENNPLIAIEVLLKLMQSSQITEYFSVLVNMEMSLHSMEVVNRLTTTV 355

Query: 174 EM 175
           ++
Sbjct: 356 DL 357

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156554509|ref|XP_001605064.1| PREDICTED: UPF0760 protein C2orf29 homolog isoform 1 [Nasonia vitripennis] gi|345493196|ref|XP_003427021.1| PREDICTED: UPF0760 protein C2orf29 homolog isoform 2 [Nasonia vitripennis]

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 99/149 (66%), Positives = 119/149 (79%), Gaps = 6/149 (4%)

Query: 33  PLVNQYYKPEFLRLVPPLH------LIWLNLVDPSEHKIAYDSTMCVSNSAGVEAKKLMT 86
           P   Q Y+PEFLR  PP+H      + W+N+ +PS+ K+ YD++MCVSN AG EA+++M 
Sbjct: 212 PAYAQSYQPEFLRPSPPIHRSTYDEVPWMNMSEPSQFKLEYDNSMCVSNCAGAEARRVMG 271

Query: 87  RAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHI 146
           RAFKS LTLQQQQHL+ EL  D KLVYHIGLTP KLPDLVENNPLIAIEVLLKL+QS+ I
Sbjct: 272 RAFKSVLTLQQQQHLVTELHKDPKLVYHIGLTPGKLPDLVENNPLIAIEVLLKLMQSSQI 331

Query: 147 TEYFSVLVNMEMSLHSMEVVNSVLVNMEM 175
           TEYFSVLVNMEMSLHSMEVVN +   +++
Sbjct: 332 TEYFSVLVNMEMSLHSMEVVNRLTTTVDL 360

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200667|gb|EFN80770.1| Uncharacterized protein C2orf29-like protein [Harpegnathos saltator]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 108/180 (60%), Positives = 126/180 (70%), Gaps = 14/180 (7%)

Query: 1   MSHSNFNEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLH-----LIWL 55
           M  S   E     V E L   T+G        PL  Q + PEFLRL PPL+     L W 
Sbjct: 186 MDQSKVTELDKRNVMESL---TTG------DPPLCRQSHHPEFLRLAPPLYHSINELSWF 236

Query: 56  NLVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHI 115
           N+ + ++  I YD++MCVSN AG EA+KLM +AFKS LTLQQQQHL+ EL  D KLVYHI
Sbjct: 237 NVTELTQFTIEYDTSMCVSNCAGAEARKLMGKAFKSVLTLQQQQHLVNELDRDPKLVYHI 296

Query: 116 GLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEM 175
           GLTP KLPDLVENNPLIAIEVLLKL+QS+ ITEYFSVLVNMEMSLHSMEVVN +   +++
Sbjct: 297 GLTPGKLPDLVENNPLIAIEVLLKLMQSSQITEYFSVLVNMEMSLHSMEVVNRLTTTVDL 356

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327286398|ref|XP_003227917.1| PREDICTED: UPF0760 protein C2orf29-like [Anolis carolinensis]

 Score =  202 bits (515), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 102/179 (56%), Positives = 131/179 (73%), Gaps = 15/179 (8%)

Query: 2   SHSNFNEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLH-----LIWLN 56
           S+S F+   A ++ E L+   SGP       P +  +++PEF+R  PPLH     L WLN
Sbjct: 191 SNSGFDSSVASQITEALV---SGP------KPPIESHFRPEFIRPPPPLHICEDELAWLN 241

Query: 57  LVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIG 116
            ++P +H I +D +MCV NSAGVE K++M +AFKS L+ QQQ  LL EL+ D KLVYHIG
Sbjct: 242 PIEP-DHAIQWDKSMCVKNSAGVEIKRIMAKAFKSPLSSQQQTQLLGELEKDPKLVYHIG 300

Query: 117 LTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEM 175
           LTPAKLPDLVENNPL+AIE+LLKL+QS+ ITEYFSVLVNM+MSLHSMEVVN +   +++
Sbjct: 301 LTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDL 359

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|242004454|ref|XP_002423100.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212506046|gb|EEB10362.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  202 bits (514), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 113/175 (64%), Positives = 135/175 (77%), Gaps = 14/175 (8%)

Query: 6   FNEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLH-----LIWLNLVDP 60
           ++  TA K AE+LL   +GP  +       +Q Y+PEF+RLVPPLH     L+W+N+ +P
Sbjct: 145 YDASTAKKTAEQLL---AGPKNI------TDQNYRPEFIRLVPPLHDCHDELVWMNMTEP 195

Query: 61  SEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPA 120
            E K AYD TMCVSNSAGVEA++LM RAFK  LTLQQQQHLL E++ D KLVY IGLTP 
Sbjct: 196 CERKPAYDVTMCVSNSAGVEARRLMARAFKGPLTLQQQQHLLNEIESDPKLVYLIGLTPN 255

Query: 121 KLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEM 175
           KLPDLVENNPLIAIEVLL+L+QSN ITEYFSVLVNMEMSLHSMEVVN +   +++
Sbjct: 256 KLPDLVENNPLIAIEVLLRLMQSNQITEYFSVLVNMEMSLHSMEVVNRLTTTVDL 310

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
MGI|MGI:106580	505	Cnot11 "CCR4-NOT transcription	0.886	0.324	0.525	1.7e-41
RGD|1560909	504	Cnot11 "CCR4-NOT transcription	0.886	0.325	0.525	2.8e-41
UNIPROTKB|Q9UKZ1	510	CNOT11 "CCR4-NOT transcription	0.886	0.321	0.519	4.6e-41
TAIR|locus:2146208	442	AT5G18420 "AT5G18420" [Arabido	0.729	0.305	0.395	6.9e-23
DICTYBASE|DDB_G0279005	642	DDB_G0279005 "unknown" [Dictyo	0.632	0.182	0.386	1.3e-13

MGI|MGI:106580 Cnot11 "CCR4-NOT transcription complex, subunit 11" [Mus musculus (taxid:10090)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 94/179 (52%), Positives = 119/179 (66%)

Query:     2 SHSNFNEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLH-----LIWLN 56
             S+S F+   A ++ E L+   SGP       P +  +++PEF+R  PPLH     L WLN
Sbjct:   247 SNSGFDSSVASRITESLV---SGP------KPPIESHFRPEFIRPPPPLHICEDELAWLN 297

Query:    57 LVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSXXXXXXXXXXXXXXXXDSKLVYHIG 116
               +P EH I +D +MCV NS GVE K++M +AFKS                D KLVYHIG
Sbjct:   298 PTEP-EHAIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIG 356

Query:   117 LTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEM 175
             LTPAKLPDLVENNPL+AIE+LLKL+QS+ ITEYFSVLVNM+MSLHSMEVVN +   +++
Sbjct:   357 LTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDL 415

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0030014 "CCR4-NOT complex" evidence=ISO

RGD|1560909 Cnot11 "CCR4-NOT transcription complex, subunit 11" [Rattus norvegicus (taxid:10116)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 94/179 (52%), Positives = 119/179 (66%)

Query:     2 SHSNFNEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLH-----LIWLN 56
             S+S F+   A ++ E L+   SGP       P +  +++PEF+R  PPLH     L WLN
Sbjct:   246 SNSAFDSSVASRITESLV---SGP------KPPIESHFRPEFIRPPPPLHICEDELAWLN 296

Query:    57 LVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSXXXXXXXXXXXXXXXXDSKLVYHIG 116
               +P EH I +D +MCV NS GVE K++M +AFKS                D KLVYHIG
Sbjct:   297 PTEP-EHAIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIG 355

Query:   117 LTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEM 175
             LTPAKLPDLVENNPL+AIE+LLKL+QS+ ITEYFSVLVNM+MSLHSMEVVN +   +++
Sbjct:   356 LTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDL 414

GO:0030014 "CCR4-NOT complex" evidence=ISO

UNIPROTKB|Q9UKZ1 CNOT11 "CCR4-NOT transcription complex subunit 11" [Homo sapiens (taxid:9606)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 93/179 (51%), Positives = 119/179 (66%)

Query:     2 SHSNFNEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYKPEFLRLVPPLH-----LIWLN 56
             S+S F+   A ++ E L+   SGP       P +  +++PEF+R  PPLH     L WLN
Sbjct:   252 SNSGFDSSVASQITEALV---SGP------KPPIESHFRPEFIRPPPPLHICEDELAWLN 302

Query:    57 LVDPSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSXXXXXXXXXXXXXXXXDSKLVYHIG 116
               +P +H I +D +MCV NS GVE K++M +AFKS                D KLVYHIG
Sbjct:   303 PTEP-DHAIQWDKSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIG 361

Query:   117 LTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEM 175
             LTPAKLPDLVENNPL+AIE+LLKL+QS+ ITEYFSVLVNM+MSLHSMEVVN +   +++
Sbjct:   362 LTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDL 420

GO:0008283 "cell proliferation" evidence=NAS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0030014 "CCR4-NOT complex" evidence=IDA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2146208 AT5G18420 "AT5G18420" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 6.9e-23, P = 6.9e-23
 Identities = 55/139 (39%), Positives = 79/139 (56%)

Query:    41 PEFLRLVPP---LHLIWLNLVDP-SEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSXXXXX 96
             P ++R  PP   +H   L  +DP ++H++ +D  MC   S+G   + L+ +  K      
Sbjct:   223 PRWIRPCPPRYPVHQSELLWIDPDNKHELVWDDKMCADTSSGATVRDLLVKGLKVTLSPT 282

Query:    97 XXXXXXXXXXXDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNM 156
                        D KLV+H G+TP KLP LVE+NP IA+E+L KL  S  I +Y+  L NM
Sbjct:   283 EQEDIITELANDPKLVFHCGITPRKLPQLVEHNPQIAVEILTKLNNSTEINDYYEALGNM 342

Query:   157 EMSLHSMEVVNSVLVNMEM 175
             +MSLHSMEVVN +   +E+
Sbjct:   343 DMSLHSMEVVNRLTTAVEL 361

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009630 "gravitropism" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

DICTYBASE|DDB_G0279005 DDB_G0279005 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 46/119 (38%), Positives = 63/119 (52%)

Query:    60 PSEHKIAYDSTMCVSNSAGVEAKKLMTRAFKSXXXXXXXXXXXXXXXXDSKLVYHIGLTP 119
             P+   I   +T    NS  +  + LMT+A K                 D KL Y+ GLTP
Sbjct:   399 PTTILIPSPTTTTSYNSKKI-VRDLMTKAIKGRLKKSQILQIKNEMDIDPKLAYYSGLTP 457

Query:   120 AKLPDLVENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEMSLH 178
               LP LVENN  +AI+ LLKLI S    ++F  L++MEM+  SMEVVN+ L  +++  H
Sbjct:   458 KNLPFLVENNTQVAIDTLLKLINSPDFKDHFQTLISMEMNFRSMEVVNA-LATVDLPPH 515


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      185       169   0.00082  108 3  11 22  0.41    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  140 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.37u 0.11s 14.48t   Elapsed:  00:00:02
  Total cpu time:  14.37u 0.11s 14.48t   Elapsed:  00:00:02
  Start:  Thu Aug 15 11:22:07 2013   End:  Thu Aug 15 11:22:09 2013

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UKZ1	CB029_HUMAN	No assigned EC number	0.5586	0.8864	0.3215	yes	N/A
Q9CWN7	CB029_MOUSE	No assigned EC number	0.5642	0.8864	0.3247	yes	N/A
B0BNA9	CB029_RAT	No assigned EC number	0.5642	0.8864	0.3253	yes	N/A
A4QP78	CB029_DANRE	No assigned EC number	0.5418	0.8864	0.3685	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	185
pfam10155	126	pfam10155, DUF2363, Uncharacterized conserved prot	1e-14

>gnl|CDD|220604 pfam10155, DUF2363, Uncharacterized conserved protein (DUF2363)

 Score = 66.5 bits (163), Expect = 1e-14
 Identities = 22/42 (52%), Positives = 31/42 (73%)

Query: 126 VENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVN 167
           +ENNP IAIE+L+KL  S    EY  VL+ M++++ S+EVVN
Sbjct: 1   IENNPQIAIEILVKLANSPDFHEYLDVLIQMDVTVQSLEVVN 42

This is a region of 120 amino acids of a family of proteins conserved from plants to humans. The function is not known. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
KOG4508|consensus	522		100.0
PF10155	126	DUF2363: Uncharacterized conserved protein (DUF236	99.79

>KOG4508|consensus

Probab=100.00  E-value=1.5e-46  Score=341.63  Aligned_cols=171  Identities=35%  Similarity=0.559  Sum_probs=163.6

Q ss_pred             CCCccchhhHHHHHHHHHhcCCCCCCCCCCCCccccCCC---------CCccccCCchh------hhhhcCCCCCCcccc
Q psy6071           2 SHSNFNEQTAYKVAEELLTKTSGPGQLNHSSPLVNQYYK---------PEFLRLVPPLH------LIWLNLVDPSEHKIA   66 (185)
Q Consensus         2 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~---------P~flRp~Ppl~------l~Wlnp~~~~~h~~~   66 (185)
                      ++|.||  ++.+|++++.+|         +.+...++|.         |+||||.||.+      +.|++|+.+ .|++.
T Consensus       256 ~~pefd--vat~V~~~m~SG---------d~~e~~s~F~~~~t~~~~~p~~IrP~pp~~~~c~del~w~~ps~p-~hev~  323 (522)
T KOG4508|consen  256 VDPEFD--VATPVIYSMCSG---------DQEELMSAFDELETIAEYQPDLIRPEPPELNDCDDELSWSSPSAP-PHEVS  323 (522)
T ss_pred             CCCccc--cccccchhhcCC---------CchHHHHHHhhhhhhhhcCccccCCCCcccCchHhHhhccCCCCC-ccccc
Confidence            357788  678999999999         8999998888         99999999999      899999887 49999


Q ss_pred             ccCCccccCCchHHHHHHHHHHHhCcCCHHHHHHHHHHHhcCcchhhhcCCCCCchhHHhhhChHHHHHHHHHHhcCCCh
Q psy6071          67 YDSTMCVSNSAGVEAKKLMTRAFKSALTLQQQQHLLAELQHDSKLVYHIGLTPAKLPDLVENNPLIAIEVLLKLIQSNHI  146 (185)
Q Consensus        67 wD~sm~~~~~~~~e~r~Lm~kA~~~~L~~~qqq~ll~~L~~Dpklv~~~gltp~kLP~LVEnNP~IAievLlkL~~s~~i  146 (185)
                      ||..||++.+.|.++|+++.|++|++|+..+|.+++-+|.+|||+|+|||+||+|||+|||+||.+|+|+|+|+++|.+|
T Consensus       324 wD~~mc~d~s~Gv~lkd~~ikglk~tlstt~qsdmm~el~~dPklv~h~gvtp~klp~lVe~Np~~A~e~L~kl~~S~qi  403 (522)
T KOG4508|consen  324 WDLEMCLDISDGVDLKDEVIKGLKGTLSTTSQSDMMIELVTDPKLVLHAGVTPEKLPSLVETNPKFAGEFLVKLALSEQI  403 (522)
T ss_pred             cchhhcccccCcccHHHHHHHHccCCCCCccHHHHHHHHhcCcceeEecccChhhhHHHHHcChHHHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhhhhhhHHHHHHHHHHhccccccchhccc
Q psy6071         147 TEYFSVLVNMEMSLHSMEVVNSVLVNMEMSLHSMEVVN  184 (185)
Q Consensus       147 ~eY~~~Lv~md~SLhSmEVVNrLtt~v~LP~eFi~v~~  184 (185)
                      ++||.+|.+||||||||||||||+|.|++|.+|||+.+
T Consensus       404 ~~Y~~~l~nmdmslHSmEvVnrLttav~lp~~fi~~yi  441 (522)
T KOG4508|consen  404 KRYMRLLENMDMSLHSMEVVNRLTTAVILPDKFIQEYI  441 (522)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHhhhhcCCHHHHHHHH
Confidence            99999999999999999999999999999999999754

>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans

Probab=99.79  E-value=4.4e-20  Score=145.72  Aligned_cols=60  Identities=48%  Similarity=0.722  Sum_probs=58.2

Q ss_pred             hhhChHHHHHHHHHHhcCCChhHHHHHHhhhhhhhhHHHHHHHHHHhccccccchhcccC
Q psy6071         126 VENNPLIAIEVLLKLIQSNHITEYFSVLVNMEMSLHSMEVVNSVLVNMEMSLHSMEVVNR  185 (185)
Q Consensus       126 VEnNP~IAievLlkL~~s~~i~eY~~~Lv~md~SLhSmEVVNrLtt~v~LP~eFi~v~~~  185 (185)
                      |||||.||+|+|.++++++++++|||+|++||+|+|||||||||++++++|+||+|.+++
T Consensus         1 ienNp~IA~~~l~~l~~s~~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~   60 (126)
T PF10155_consen    1 IENNPNIAIEILVKLINSPNFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYIS   60 (126)
T ss_pred             CCCcHHHHHHHHHHHcCCchHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            799999999999999999999999999999999999999999999999999999999863

Their function is not known.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
1zoq_C	47	CREB-binding protein, interferon regulatory factor	83.42

>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A

Probab=83.42  E-value=0.57  Score=30.76  Aligned_cols=30  Identities=37%  Similarity=0.542  Sum_probs=24.6

Q ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHhcCcchh
Q psy6071          82 KKLMTRAFKSALTLQQQQHLLAELQHDSKLV  112 (185)
Q Consensus        82 r~Lm~kA~~~~L~~~qqq~ll~~L~~Dpklv  112 (185)
                      ++|| +.+++|=+++|||+++.-|+.+|.|.
T Consensus         4 qqLl-~tlksp~sp~qqqqvl~ILksnPqLM   33 (47)
T 1zoq_C            4 QDLL-RTLKSPSSPQQQQQVLNILKSNPQLM   33 (47)
T ss_dssp             HHHH-HTCCSCCCHHHHHHHHHHHHTCHHHH
T ss_pred             HHHH-HHhcCCCCHHHHHHHHHHHHcCHHHH
Confidence            3444 56899999999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1zoqc1	47	Nuclear receptor coactivator CBP/p300 ibid domain	87.78

>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Nuclear receptor coactivator interlocking domain
superfamily: Nuclear receptor coactivator interlocking domain
family: Nuclear receptor coactivator interlocking domain
domain: Nuclear receptor coactivator CBP/p300 ibid domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.78  E-value=0.12  Score=32.17  Aligned_cols=27  Identities=37%  Similarity=0.477  Sum_probs=23.3

Q ss_pred             HHHHhCcCCHHHHHHHHHHHhcCcchh
Q psy6071          86 TRAFKSALTLQQQQHLLAELQHDSKLV  112 (185)
Q Consensus        86 ~kA~~~~L~~~qqq~ll~~L~~Dpklv  112 (185)
                      -+.+++|=+|.|||++++-|+.+|.+.
T Consensus         7 l~tLrsP~sP~QQqQvL~ILksNP~lm   33 (47)
T d1zoqc1           7 LRTLKSPSSPQQQQQVLNILKSNPQLM   33 (47)
T ss_dssp             HHTCCSCCCHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHcCHHHH
Confidence            367899999999999999999887654