Psyllid ID: psy607

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MQAIAHEIFGNTLKYSWRDFLIQSYEIPYPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYCPEIADGEDRR
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccccHcHHHHHHHccccccccHHHHHHHHHHccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccEEEcccccHHHHHHHHHHHHHcHHHHcccccc
Coil and Loop (DISEMBL)
MQAIAHEIFGNTLKYSWRDFLIqsyeipypnwhqlmnmaqmatptatlvetrglrpfksSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDtgvtlcrgkstffkSSIKEqrrsycpeiadgedrr
Flexible Loop (DISEMBL)
MQAIAHEIFGNTLKYSWRDFLIQSYEIPYPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKStffkssikeqrrsycpeiadgedrr
Low Complexity Region (SEG)
MQAIAHEIFGNTLKYSWRDFLIQSYEIPYPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYCPEIADGEDRR
Disordered region (IsUnstruct)
***IAHEIFGNTLKYSWRDFLIQSYEIPYPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFK*********************
Disordered Region (DISOPRED)
****AHEIFGNTLKYSWRDFLIQSYEIPYP*******************************EYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKE****************
Disordered Region (DISEMBL)
MQAIAHEIFGNTLKYSWRDFLIQSYEIPYPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYCPEIADGEDRR
Disordered Region (DISPRO)
MQAIAHEIFGNTLKYSWRDFLIQSYEIPYPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYCPEIAD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQAIAHEIFGNTLKYSWRDFLIQSYEIPYPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYCPEIADGEDRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
Q5SSG4	860	GAS2-like protein 2 OS=Mu	yes	N/A	0.410	0.061	0.592	2e-11
Q8NHY3	880	GAS2-like protein 2 OS=Ho	yes	N/A	0.364	0.053	0.625	9e-11
Q8JZP9	678	GAS2-like protein 1 OS=Mu	no	N/A	0.472	0.089	0.484	3e-08
Q99501	681	GAS2-like protein 1 OS=Ho	no	N/A	0.279	0.052	0.578	2e-05

>sp|Q5SSG4|GA2L2_MOUSE GAS2-like protein 2 OS=Mus musculus GN=Gas2l2 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 41/54 (75%), Gaps = 1/54 (1%)

Query: 52  RGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKST 105
           R +RPFKSSE+YL AMKEDLAEWL +LY  L ++  NF+  L+TG+ LCR  +T
Sbjct: 19  RSIRPFKSSEQYLEAMKEDLAEWLRDLY-GLDIDADNFLRVLETGLVLCRHANT 71

Seems to be involved in the cross-linking of microtubules and microfilaments.
Mus musculus (taxid: 10090)

>sp|Q8NHY3|GA2L2_HUMAN GAS2-like protein 2 OS=Homo sapiens GN=GAS2L2 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/48 (62%), Positives = 39/48 (81%), Gaps = 1/48 (2%)

Query: 54  LRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
           +RPFKSSE+YL AMKEDLAEWL +LY  L ++ ANF+  L+TG+ LC+
Sbjct: 21  IRPFKSSEQYLEAMKEDLAEWLRDLY-GLDIDAANFLQVLETGLVLCQ 67

Seems to be involved in the cross-linking of microtubules and microfilaments.

Homo sapiens (taxid: 9606)

>sp|Q8JZP9|GA2L1_MOUSE GAS2-like protein 1 OS=Mus musculus GN=Gas2l1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 41  MATPTATLVET--RGLRPFKSSEEYLYAMKEDLAEWLNNLY-VELHMNVANFMDRLDTGV 97
           MA P A +  +  + +RPF+SSE Y+ AMKEDLA+WLN LY + L  +   F+  L TG 
Sbjct: 1   MANPVAGIAGSAAKSVRPFRSSEAYVEAMKEDLADWLNALYSLGLPGSGDGFLTGLATGT 60

Query: 98  TLCR 101
           TLC+
Sbjct: 61  TLCQ 64

Seems to be involved in the cross-linking of microtubules and microfilaments.

Mus musculus (taxid: 10090)

>sp|Q99501|GA2L1_HUMAN GAS2-like protein 1 OS=Homo sapiens GN=GAS2L1 PE=1 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 2/38 (5%)

Query: 41 MATPTATLVET--RGLRPFKSSEEYLYAMKEDLAEWLN 76
          MA P A +  +  + +RPF+SSE Y+ AMKEDLAEWLN
Sbjct: 1  MADPVAGIAGSAAKSVRPFRSSEAYVEAMKEDLAEWLN 38

Seems to be involved in the cross-linking of microtubules and microfilaments.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
328719496	810	PREDICTED: hypothetical protein LOC10016	0.434	0.069	0.803	2e-19
357631516	770	hypothetical protein KGM_15680 [Danaus p	0.472	0.079	0.721	2e-17
328777757	921	PREDICTED: hypothetical protein LOC41158	0.604	0.084	0.589	2e-17
340717645	877	PREDICTED: hypothetical protein LOC10064	0.604	0.088	0.589	2e-17
157128481	63	hypothetical protein AaeL_AAEL011151 [Ae	0.465	0.952	0.7	3e-17
347970881	923	AGAP003901-PA [Anopheles gambiae str. PE	0.418	0.058	0.740	3e-17
312373065	362	hypothetical protein AND_18341 [Anophele	0.426	0.151	0.763	3e-17
383856084	901	PREDICTED: uncharacterized protein LOC10	0.604	0.086	0.589	3e-17
350407389	901	PREDICTED: hypothetical protein LOC10074	0.604	0.086	0.589	3e-17
242009831	844	hypothetical protein Phum_PHUM215460 [Pe	0.503	0.077	0.630	5e-16

>gi|328719496|ref|XP_001943028.2| PREDICTED: hypothetical protein LOC100162040 [Acyrthosiphon pisum]

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/56 (80%), Positives = 49/56 (87%)

Query: 46  ATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
           A LVE+R  RPFKSSEEYLYAMKEDLAEWLN LY EL++NV NFMDRLDTGV LC+
Sbjct: 2   ALLVESRSFRPFKSSEEYLYAMKEDLAEWLNGLYPELYINVNNFMDRLDTGVALCK 57

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357631516|gb|EHJ78986.1| hypothetical protein KGM_15680 [Danaus plexippus]

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/61 (72%), Positives = 48/61 (78%)

Query: 41  MATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLC 100
           MA+  A L+E R  RPFKSSEEYLYAMKEDLAEWL  LY EL +N  NF+DRLDTGV LC
Sbjct: 1   MASAGAVLLEARPFRPFKSSEEYLYAMKEDLAEWLTVLYPELRINADNFLDRLDTGVALC 60

Query: 101 R 101
           R
Sbjct: 61  R 61

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777757|ref|XP_395056.4| PREDICTED: hypothetical protein LOC411586 [Apis mellifera]

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/78 (58%), Positives = 55/78 (70%)

Query: 46  ATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKST 105
           + L+E R  RPFKSSEEYL AMKEDLAEWLN LY EL +NV NFMDRLDTGV LC+  + 
Sbjct: 2   SVLLEARSYRPFKSSEEYLIAMKEDLAEWLNALYPELRINVDNFMDRLDTGVALCKHANN 61

Query: 106 FFKSSIKEQRRSYCPEIA 123
             KS+ +   R    +I+
Sbjct: 62  VRKSAAEYVARRQARKIS 79

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717645|ref|XP_003397290.1| PREDICTED: hypothetical protein LOC100643453 [Bombus terrestris]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/78 (58%), Positives = 55/78 (70%)

Query: 46  ATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKST 105
           + L+E R  RPFKSSEEYL AMKEDLAEWLN LY EL +NV NFMDRLDTGV LC+  + 
Sbjct: 2   SVLLEARSYRPFKSSEEYLVAMKEDLAEWLNALYPELRINVDNFMDRLDTGVALCKHANN 61

Query: 106 FFKSSIKEQRRSYCPEIA 123
             KS+ +   R    ++A
Sbjct: 62  VRKSAAEYVARRQARKVA 79

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157128481|ref|XP_001661448.1| hypothetical protein AaeL_AAEL011151 [Aedes aegypti] gi|108872560|gb|EAT36785.1| AAEL011151-PA [Aedes aegypti]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 49/60 (81%)

Query: 45  TATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKS 104
           +  L+E R  RPFKSSEEYLYAM+EDLAEW+N +Y EL MNV NFMDRLDTGV LC+ K+
Sbjct: 2   STVLLEARPYRPFKSSEEYLYAMREDLAEWMNTMYPELRMNVDNFMDRLDTGVALCKNKN 61

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347970881|ref|XP_308133.5| AGAP003901-PA [Anopheles gambiae str. PEST] gi|333466415|gb|EAA03880.5| AGAP003901-PA [Anopheles gambiae str. PEST]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/54 (74%), Positives = 47/54 (87%)

Query: 48  LVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
           L+E+R  RPFKSSEEYLYAM+EDLAEWLN +Y +L +NV NFMDRLDTGV LC+
Sbjct: 5   LLESRPYRPFKSSEEYLYAMREDLAEWLNTMYPDLRINVENFMDRLDTGVALCK 58

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373065|gb|EFR20891.1| hypothetical protein AND_18341 [Anopheles darlingi]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/55 (76%), Positives = 47/55 (85%)

Query: 47  TLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
            L+E+R  RPFKSSEEYLYAM+EDLAEWLN LY EL +NV NFMDRLDTGV LC+
Sbjct: 4   VLLESRSYRPFKSSEEYLYAMREDLAEWLNTLYPELRINVENFMDRLDTGVALCK 58

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856084|ref|XP_003703540.1| PREDICTED: uncharacterized protein LOC100880568 [Megachile rotundata]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/78 (58%), Positives = 55/78 (70%)

Query: 46  ATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKST 105
           + L+E R  RPFKSSEEYL AMKEDLAEWLN LY EL +NV NFMDRLDTGV LC+  + 
Sbjct: 2   SVLLEARSYRPFKSSEEYLVAMKEDLAEWLNALYPELRINVDNFMDRLDTGVALCKHANN 61

Query: 106 FFKSSIKEQRRSYCPEIA 123
             KS+ +   R    +I+
Sbjct: 62  VRKSAAEYVARRQARKIS 79

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407389|ref|XP_003488073.1| PREDICTED: hypothetical protein LOC100740651 [Bombus impatiens]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/78 (58%), Positives = 55/78 (70%)

Query: 46  ATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKST 105
           + L+E R  RPFKSSEEYL AMKEDLAEWLN LY EL +NV NFMDRLDTGV LC+  + 
Sbjct: 2   SVLLEARSYRPFKSSEEYLVAMKEDLAEWLNALYPELRINVDNFMDRLDTGVALCKHANN 61

Query: 106 FFKSSIKEQRRSYCPEIA 123
             KS+ +   R    +I+
Sbjct: 62  VRKSAAEYVARRQARKIS 79

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009831|ref|XP_002425686.1| hypothetical protein Phum_PHUM215460 [Pediculus humanus corporis] gi|212509579|gb|EEB12948.1| hypothetical protein Phum_PHUM215460 [Pediculus humanus corporis]

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 50/65 (76%)

Query: 46  ATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKST 105
             L+E R  RPFKSSEEYLYAMKEDLAEWLN LY +L + V NFMD+L+TGV LC+  ++
Sbjct: 3   GVLLEARPYRPFKSSEEYLYAMKEDLAEWLNILYSDLEITVDNFMDKLETGVVLCKHANS 62

Query: 106 FFKSS 110
             KS+
Sbjct: 63  VKKSA 67

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
FB|FBgn0029881	977	pigs "pickled eggs" [Drosophil	0.418	0.055	0.703	7.8e-15
ZFIN|ZDB-GENE-070705-38	576	gas2l1 "growth arrest-specific	0.542	0.121	0.493	3.8e-13
UNIPROTKB|F1P281	269	GAS2L2 "Uncharacterized protei	0.596	0.286	0.445	3.3e-12
UNIPROTKB|G1SL12	857	GAS2L2 "Uncharacterized protei	0.457	0.068	0.55	1.3e-11
UNIPROTKB|G1M8E1	878	GAS2L2 "Uncharacterized protei	0.379	0.055	0.66	2.9e-11
UNIPROTKB|G1PRB7	869	GAS2L2 "Uncharacterized protei	0.457	0.067	0.533	6e-11
RGD|1307868	857	Gas2l2 "growth arrest-specific	0.457	0.068	0.533	7.5e-11
MGI|MGI:3652048	860	Gas2l2 "growth arrest-specific	0.457	0.068	0.533	1.2e-10
UNIPROTKB|G1QKQ7	880	GAS2L2 "Uncharacterized protei	0.364	0.053	0.645	2.1e-10
UNIPROTKB|K7EIX8	864	GAS2L2 "GAS2-like protein 2" [	0.364	0.054	0.625	5.4e-10

FB|FBgn0029881 pigs "pickled eggs" [Drosophila melanogaster (taxid:7227)]

 Score = 201 (75.8 bits), Expect = 7.8e-15, P = 7.8e-15
 Identities = 38/54 (70%), Positives = 44/54 (81%)

Query:    48 LVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
             ++E R  RPFKSSEEYL AM+EDLAEWL+ LY EL +N  NFMDRLDTGV LC+
Sbjct:     3 MLEARPYRPFKSSEEYLEAMREDLAEWLSTLYPELSINADNFMDRLDTGVALCK 56

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0030713 "ovarian follicle cell stalk formation" evidence=IMP

GO:0030707 "ovarian follicle cell development" evidence=IMP

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IMP

ZFIN|ZDB-GENE-070705-38 gas2l1 "growth arrest-specific 2 like 1" [Danio rerio (taxid:7955)]

 Score = 182 (69.1 bits), Expect = 3.8e-13, P = 3.8e-13
 Identities = 36/73 (49%), Positives = 51/73 (69%)

Query:    51 TRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSS 110
             ++ +RPFKSSEEYLYAMKEDLAEWLN LY +L +    FM+ L+TG  LCR  +   +++
Sbjct:    12 SKSIRPFKSSEEYLYAMKEDLAEWLNTLY-DLDITADTFMEGLETGCALCRHANNVNRAA 70

Query:   111 IKEQRRSYCPEIA 123
                + ++ CP+ A
Sbjct:    71 --HEFKANCPDAA 81

GO:0007050 "cell cycle arrest" evidence=IEA

UNIPROTKB|F1P281 GAS2L2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 37/83 (44%), Positives = 49/83 (59%)

Query:    41 MATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLC 100
             M TP A +   R +RP+ SS++YLYAMKEDLAEWL  LY EL + V  F++ L+TG  LC
Sbjct:     5 MGTPGAAV---RSIRPYGSSQQYLYAMKEDLAEWLKELY-ELDIEVGTFLEVLETGAVLC 60

Query:   101 RGKSTFFKSSIKEQRRSYCPEIA 123
                +   +  + E     CP  A
Sbjct:    61 SHANHITR--VAEDFAHACPSAA 81

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

UNIPROTKB|G1SL12 GAS2L2 "Uncharacterized protein" [Oryctolagus cuniculus (taxid:9986)]

 Score = 170 (64.9 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query:    52 RGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI 111
             R +RPFKSSE+YL AMKEDLAEWL NLY  L ++ ANF+  L+TG+ LCR  +   ++++
Sbjct:    19 RSIRPFKSSEQYLEAMKEDLAEWLRNLY-GLDIDAANFLQVLETGLVLCRHANAITEAAL 77

GO:0001578 "microtubule bundle formation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007026 "negative regulation of microtubule depolymerization" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0008093 "cytoskeletal adaptor activity" evidence=ISS

GO:0051015 "actin filament binding" evidence=ISS

GO:0001725 "stress fiber" evidence=ISS

GO:0005874 "microtubule" evidence=ISS

UNIPROTKB|G1M8E1 GAS2L2 "Uncharacterized protein" [Ailuropoda melanoleuca (taxid:9646)]

 Score = 167 (63.8 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 33/50 (66%), Positives = 40/50 (80%)

Query:    52 RGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
             R +RPFKSSE+YL AM EDLAEWL +LY  L +NVANF+  L+TG+ LCR
Sbjct:    19 RSIRPFKSSEQYLEAMTEDLAEWLRDLY-GLDINVANFLQVLETGLVLCR 67

GO:0001578 "microtubule bundle formation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007026 "negative regulation of microtubule depolymerization" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0008093 "cytoskeletal adaptor activity" evidence=ISS

GO:0051015 "actin filament binding" evidence=ISS

GO:0001725 "stress fiber" evidence=ISS

GO:0005874 "microtubule" evidence=ISS

UNIPROTKB|G1PRB7 GAS2L2 "Uncharacterized protein" [Myotis lucifugus (taxid:59463)]

 Score = 164 (62.8 bits), Expect = 6.0e-11, P = 6.0e-11
 Identities = 32/60 (53%), Positives = 45/60 (75%)

Query:    52 RGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI 111
             R +RPFKSSE+YL AMKEDLAEWL +LY  L ++ ANF+  L+TG+ LCR  +   ++++
Sbjct:    19 RSVRPFKSSEQYLEAMKEDLAEWLRDLY-GLDISAANFLQVLETGLVLCRHANAITEAAL 77

GO:0001578 "microtubule bundle formation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007026 "negative regulation of microtubule depolymerization" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0008093 "cytoskeletal adaptor activity" evidence=ISS

GO:0051015 "actin filament binding" evidence=ISS

GO:0001725 "stress fiber" evidence=ISS

GO:0005874 "microtubule" evidence=ISS

RGD|1307868 Gas2l2 "growth arrest-specific 2 like 2" [Rattus norvegicus (taxid:10116)]

 Score = 163 (62.4 bits), Expect = 7.5e-11, P = 7.5e-11
 Identities = 32/60 (53%), Positives = 45/60 (75%)

Query:    52 RGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI 111
             R +RPFKSSE+YL  MKEDLAEWL +LY  L ++ ANF+  L+TG+ LCR  +T  ++++
Sbjct:    19 RSIRPFKSSEQYLEVMKEDLAEWLRDLY-GLDIDAANFLRVLETGLVLCRHANTVTEAAL 77

GO:0001578 "microtubule bundle formation" evidence=ISO;ISS

GO:0001725 "stress fiber" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005874 "microtubule" evidence=ISO;ISS

GO:0007026 "negative regulation of microtubule depolymerization" evidence=ISO;ISS

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0008017 "microtubule binding" evidence=ISO;ISS

GO:0008093 "cytoskeletal adaptor activity" evidence=ISO;ISS

GO:0051015 "actin filament binding" evidence=ISO;ISS

MGI|MGI:3652048 Gas2l2 "growth arrest-specific 2 like 2" [Mus musculus (taxid:10090)]

 Score = 161 (61.7 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 32/60 (53%), Positives = 45/60 (75%)

Query:    52 RGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI 111
             R +RPFKSSE+YL AMKEDLAEWL +LY  L ++  NF+  L+TG+ LCR  +T  ++++
Sbjct:    19 RSIRPFKSSEQYLEAMKEDLAEWLRDLY-GLDIDADNFLRVLETGLVLCRHANTVTEAAL 77

GO:0001578 "microtubule bundle formation" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=ISO

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0008017 "microtubule binding" evidence=ISO

GO:0008093 "cytoskeletal adaptor activity" evidence=ISO

GO:0051015 "actin filament binding" evidence=ISO

UNIPROTKB|G1QKQ7 GAS2L2 "Uncharacterized protein" [Nomascus leucogenys (taxid:61853)]

 Score = 159 (61.0 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 31/48 (64%), Positives = 39/48 (81%)

Query:    54 LRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
             +RPFKSSE+YL AMKEDLAEWL +LY  L ++ ANF+  L+TG+ LCR
Sbjct:    21 IRPFKSSEQYLEAMKEDLAEWLRDLY-GLDIDAANFLQVLETGLVLCR 67

GO:0001578 "microtubule bundle formation" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007026 "negative regulation of microtubule depolymerization" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0008093 "cytoskeletal adaptor activity" evidence=ISS

GO:0051015 "actin filament binding" evidence=ISS

GO:0001725 "stress fiber" evidence=ISS

GO:0005874 "microtubule" evidence=ISS

UNIPROTKB|K7EIX8 GAS2L2 "GAS2-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 30/48 (62%), Positives = 39/48 (81%)

Query:    54 LRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
             +RPFKSSE+YL AMKEDLAEWL +LY  L ++ ANF+  L+TG+ LC+
Sbjct:    21 IRPFKSSEQYLEAMKEDLAEWLRDLY-GLDIDAANFLQVLETGLVLCQ 67

GO:0007050 "cell cycle arrest" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5SSG4	GA2L2_MOUSE	No assigned EC number	0.5925	0.4108	0.0616	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
KOG2046|consensus	193		99.24
cd00014	107	CH Calponin homology domain; actin-binding domain	98.91
smart00033	103	CH Calponin homology domain. Actin binding domains	98.79
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	98.62
COG5199	178	SCP1 Calponin [Cytoskeleton]	97.86
KOG0046|consensus	627		97.15
KOG0532|consensus	722		97.07
KOG2996|consensus	865		96.33
KOG2128|consensus	1401		93.81
PF11971	85	CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T	93.52
COG5261	1054	IQG1 Protein involved in regulation of cellular mo	92.63
KOG3631|consensus	365		83.39

>KOG2046|consensus

Probab=99.24  E-value=3.5e-12  Score=102.41  Aligned_cols=55  Identities=25%  Similarity=0.538  Sum_probs=48.1

Q ss_pred             CCcHHHhHHhHHHHHHHHHHHhccccCC-hhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           58 KSSEEYLYAMKEDLAEWLNNLYVELHMN-VANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        58 KssekyL~aMkEDLaeWI~~Ll~Ge~i~-~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      |+..||+..++.+|.+||..+. ....+ .+||.+.|+|||+||+|+|+|+|+++..
T Consensus        17 k~~~k~~~~~~~el~~WI~~~~-~~~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~   72 (193)
T KOG2046|consen   17 KIESKYDDELEKELREWIENVV-LTELPARGDFQDLLKDGVILCKLINKLYPGVVKK   72 (193)
T ss_pred             HhhcccCHHHHHHHHHHHHHhh-ccCCCcccCHHHHHcchHHHHHHHHHhCcCcccc
Confidence            4578999999999999999986 55554 7789999999999999999999987764

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=98.91  E-value=8.9e-10  Score=74.37  Aligned_cols=47  Identities=26%  Similarity=0.506  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHHhccccC--ChhhHHhhhhhhhhhhhhhcccccchHHHH
Q psy607           67 MKEDLAEWLNNLYVELHM--NVANFMDRLDTGVTLCRGKSTFFKSSIKEQ  114 (129)
Q Consensus        67 MkEDLaeWI~~Ll~Ge~i--~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~  114 (129)
                      .++++.+|++.++ ++..  ..+||.+.|+||++||+|+|.+.|+.+...
T Consensus         2 ~~~~l~~Win~~l-~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~   50 (107)
T cd00014           2 QKEELLRWINKVL-GEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKK   50 (107)
T ss_pred             hHHHHHHHHHHHh-ccCCCccHHHHHHHHhchHHHHHHHHHHCccccccc
Confidence            5789999999999 6666  589999999999999999999999988653

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>smart00033 CH Calponin homology domain

Probab=98.79  E-value=3.9e-09  Score=70.40  Aligned_cols=46  Identities=28%  Similarity=0.525  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHhcccc--CChhhHHhhhhhhhhhhhhhcccccchHHHH
Q psy607           68 KEDLAEWLNNLYVELH--MNVANFMDRLDTGVTLCRGKSTFFKSSIKEQ  114 (129)
Q Consensus        68 kEDLaeWI~~Ll~Ge~--i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~  114 (129)
                      ++++..|++..+ +..  ...++|.+.|+||++||+|+|.+.|+++...
T Consensus         2 ~~~l~~Win~~l-~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~   49 (103)
T smart00033        2 EKTLLRWVNSLL-AEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKK   49 (103)
T ss_pred             hHHHHHHHHHHc-ccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChh
Confidence            578999999999 654  5788999999999999999999999998753

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=98.62  E-value=1.8e-08  Score=67.91  Aligned_cols=45  Identities=29%  Similarity=0.611  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhccc--cCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           68 KEDLAEWLNNLYVEL--HMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        68 kEDLaeWI~~Ll~Ge--~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      ++.+..||+.++...  .....+|.+.|+||++||+|+|.+.|+.+.
T Consensus         1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~   47 (108)
T PF00307_consen    1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTID   47 (108)
T ss_dssp             HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSS
T ss_pred             CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccch
Confidence            468999999999433  457779999999999999999999999874

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>COG5199 SCP1 Calponin [Cytoskeleton]

Probab=97.86  E-value=8.1e-06  Score=65.21  Aligned_cols=49  Identities=18%  Similarity=0.363  Sum_probs=42.6

Q ss_pred             hHHhHHHHHHHHHHHhccccCCh-hhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           64 LYAMKEDLAEWLNNLYVELHMNV-ANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        64 L~aMkEDLaeWI~~Ll~Ge~i~~-DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      ....+.++..||..++ |+++.+ .+|++-|+|||+||+.-|...|+-|.+
T Consensus        11 ~~~~~kev~~Wie~~l-~~k~~ppgdll~~lkdGv~lCril~ea~~~~I~y   60 (178)
T COG5199          11 MDKQQKEVTLWIETVL-GEKFEPPGDLLSLLKDGVRLCRILNEASPLDIKY   60 (178)
T ss_pred             CHHHHHHHHHHHHHHH-HhhhCCcccHHHHHhcchHHHHHHhhcCccccee
Confidence            3455678999999999 999965 789999999999999999999987764

>KOG0046|consensus

Probab=97.15  E-value=0.00033  Score=64.49  Aligned_cols=49  Identities=20%  Similarity=0.285  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHhccccC---------ChhhHHhhhhhhhhhhhhhcccccchHHHHHH
Q psy607           68 KEDLAEWLNNLYVELHM---------NVANFMDRLDTGVTLCRGKSTFFKSSIKEQRR  116 (129)
Q Consensus        68 kEDLaeWI~~Ll~Ge~i---------~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~~  116 (129)
                      |-.-..|||+.+.|.+.         +...|++..+||++||||+|.=-||.|++..-
T Consensus       121 k~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERai  178 (627)
T KOG0046|consen  121 KRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAI  178 (627)
T ss_pred             HHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhh
Confidence            33678999999976543         44579999999999999999999999998543

>KOG0532|consensus

Probab=97.07  E-value=0.00055  Score=63.92  Aligned_cols=46  Identities=15%  Similarity=0.268  Sum_probs=34.6

Q ss_pred             HhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           66 AMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        66 aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      ++.+.|.+=|..-+ -.++..| |-.+|-|||+||+|||.|.|-||..
T Consensus       576 eL~~QLRk~iEtRL-k~sLp~D-l~aALtDGViLChLaN~lRPRSV~S  621 (722)
T KOG0532|consen  576 ELMLQLRKLIETRL-KVSLPED-LAAALTDGVILCHLANHLRPRSVAS  621 (722)
T ss_pred             HHHHHHHHHHHHHh-cccCchh-HHHHhhcchhhHhhhcccCCCCccc
Confidence            44555555565555 4445555 9999999999999999999988764

>KOG2996|consensus

Probab=96.33  E-value=0.0021  Score=60.51  Aligned_cols=53  Identities=23%  Similarity=0.396  Sum_probs=38.4

Q ss_pred             HHHHHHHHH--hc-cccC-----ChhhHHhhhhhhhhhhhhhcccccchHHHHHHhhcCcc
Q psy607           70 DLAEWLNNL--YV-ELHM-----NVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYCPEI  122 (129)
Q Consensus        70 DLaeWI~~L--l~-Ge~i-----~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~~~~~p~~  122 (129)
                      .++.||-..  +| .-.+     .+=.|-.+|+|||+||||+|+|-|++|.----++-|..
T Consensus         6 qCarWLidckVLptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQm   66 (865)
T KOG2996|consen    6 QCARWLIDCKVLPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQM   66 (865)
T ss_pred             HHHHHHhhccccCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCc
Confidence            577888653  33 3323     23368899999999999999999999986555555543

>KOG2128|consensus

Probab=93.81  E-value=0.055  Score=54.26  Aligned_cols=49  Identities=20%  Similarity=0.328  Sum_probs=39.6

Q ss_pred             CcHHHhHHhHHHHHHHHHHHhccccCChh-hHHhhhhhhhhhhhhhcccccc
Q psy607           59 SSEEYLYAMKEDLAEWLNNLYVELHMNVA-NFMDRLDTGVTLCRGKSTFFKS  109 (129)
Q Consensus        59 ssekyL~aMkEDLaeWI~~Ll~Ge~i~~D-nF~e~LkdGvlLCkLAN~LqpG  109 (129)
                      .+=+||= -=||...||+..+ |+.+.+. .|.+.|+|||+|-+|+|.++|-
T Consensus        36 vaYeyLC-r~eE~k~W~e~cl-~edL~pttele~~LRNGV~LAkL~~~f~PD   85 (1401)
T KOG2128|consen   36 VAYEYLC-RVEEAKRWIEECL-GEDLPPTTELEEGLRNGVYLAKLGQFFAPD   85 (1401)
T ss_pred             HHHHHHH-hHHHHHHHHHHHh-cccCCCchHHHHHhhhhhHHHHHHhhcCCc
Confidence            3444542 2367899999999 9998554 6999999999999999999993

>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins

Probab=93.52  E-value=0.031  Score=39.46  Aligned_cols=29  Identities=17%  Similarity=0.273  Sum_probs=26.4

Q ss_pred             ChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           85 NVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        85 ~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      .++||...|.||++||.|++...|+.+..
T Consensus        12 ~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~   40 (85)
T PF11971_consen   12 PVEDLTQDLSDGRALCALIHFYCPQLLPL   40 (85)
T ss_pred             chhhhhhhhccHHHHHHHHHHhCcceecH
Confidence            67899999999999999999999998854

>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]

Probab=92.63  E-value=0.085  Score=51.38  Aligned_cols=43  Identities=21%  Similarity=0.320  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           69 EDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        69 EDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      +|.-.||..++ ++.++...|.|.|+|||.|-+|..+++|..++
T Consensus        47 ~EaK~WIee~~-~~~l~~~~fe~slRnGV~La~l~q~f~pd~~~   89 (1054)
T COG5261          47 SEAKIWIEEVI-EEALPELCFEDSLRNGVFLAKLTQRFNPDLTT   89 (1054)
T ss_pred             HHHHHHHHHHh-ccCCchhhHHHHHhccchHHHHHHHhCCCcee
Confidence            57789999999 99999999999999999999999999998764

>KOG3631|consensus

Probab=83.39  E-value=1  Score=39.62  Aligned_cols=60  Identities=17%  Similarity=0.238  Sum_probs=46.2

Q ss_pred             HHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHHHHHhhcCccccCC
Q psy607           61 EEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYCPEIADGE  126 (129)
Q Consensus        61 ekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~~~~~p~~a~~~  126 (129)
                      ..-+.++..=|.+|||.++.++.|=+-.+.|.|=||.||-+|-.++..--      -.-||++|++
T Consensus        85 DpK~~el~kvLi~WiN~~L~~erIvVr~LeEDlfDGqilqkL~ekL~~~k------lev~evtqse  144 (365)
T KOG3631|consen   85 DPKFEELVKVLIDWINDVLVPERIVVRSLEEDLFDGQILQKLFEKLAALK------LEVAEVTQSE  144 (365)
T ss_pred             ChhHHHHHHHHHHHHHHhhcchhhhHHhhHHhhhhhHHHHHHHHHHHhhh------ccchhhhhhh
Confidence            33445666778999999998999988899999999999999988876322      2256666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	129
2qs7_A	144	Crystal Structure Of A Putative Oxidoreductase Of T		1e-04

>pdb|2QS7|A Chain A, Crystal Structure Of A Putative Oxidoreductase Of The DsreDSRF-Like Family (Sso1126) From Sulfolobus Solfataricus P2 At 2.09 A Resolution Length = 144

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 16/76 (21%)
Query: 26  EIPYPNWHQLMNMAQMATPTATLVETRGLRPFKSS--EEYLYAMKEDLAEWLNNLYVELH 83
           E  YP WHQL+  A+         E   ++ F  S   E+    +EDLAE+++++     
Sbjct: 81  EXKYPXWHQLVQQAK---------EIGEVKVFACSTTXEFFGIKREDLAEFVDDV----- 126
Query: 84  MNVANFMDRLDTGVTL 99
           + VA F+DR + G TL
Sbjct: 127 VGVATFLDRAEGGTTL 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	3e-07
3i6x_A	193	P195, RAS GTPase-activating-like protein iqgap1; a	9e-07
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	1e-05
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	9e-05
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	2e-04

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Length = 190

 Score = 46.1 bits (109), Expect = 3e-07
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 41  MATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLC 100
           + + TA  ++ R  R    + EYL  ++E    W+     E         + L  GV L 
Sbjct: 3   LGSLTAEEMDER--RRQNVAYEYLCHLEE-AKRWMEACLGEDLPPTTELEEGLRNGVYLA 59

Query: 101 R 101
           +
Sbjct: 60  K 60

>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Length = 193

 Score = 45.0 bits (106), Expect = 9e-07
 Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 55  RPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
           R    + EYL  ++E    W+     E         + L  GV L +
Sbjct: 37  RRQNVAYEYLCHLEEAK-RWMEACLGEDLPPTTELEEGLRNGVYLAK 82

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 203

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 1/61 (1%)

Query: 41  MATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLC 100
           + T  +        R    + +YL  + E   +W+           + F   L  GV L 
Sbjct: 31  VGTKGSNTRLAAKQRETLQAYDYLCRVDE-AKKWIEECLGTDLGPTSTFEQSLRNGVVLA 89

Query: 101 R 101
            
Sbjct: 90  L 90

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 159

 Score = 39.1 bits (91), Expect = 9e-05
 Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 55  RPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK 112
           R    + +YL  + E   +W+           + F   L  GV L      F    + 
Sbjct: 1   RETLQAYDYLCRVDE-AKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI 57

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 136

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 58  KSSEEYLYAMKEDLAEWLNNLYVELHMNV-ANFMDRLDTGVTLCRGKSTFFKSSIK 112
           K +++Y +  +++L EW+  +       +  NFMD L  G+ LC   +     S+K
Sbjct: 9   KLAQKYDHQREQELREWIEGV---TGRRIGNNFMDGLKDGIILCEFINKLQPGSVK 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
3i6x_A	193	P195, RAS GTPase-activating-like protein iqgap1; a	99.57
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	99.57
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	99.56
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	99.56
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	99.55
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	99.54
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	99.46
1h67_A	108	Calponin alpha; cytoskeleton, calponin homology do	99.43
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	99.41
2l3g_A	126	RHO guanine nucleotide exchange factor 7; structur	99.26
1wyr_A	121	RHO guanine nucleotide exchange factor 6; CH domai	99.24
2qjz_A	123	Microtubule-associated protein RP/EB family member	98.82
1wyo_A	159	Protein EB3, microtubule-associated protein RP/EB	98.73
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	98.67
2yrn_A	129	Neuron navigator 2 isoform 4; calponin homolgy dom	98.6
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	98.43
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	98.2
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	98.2
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	98.17
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	98.16
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	98.06
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	97.96
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	97.8
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	97.52
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	97.36
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	97.28
2vzc_A	131	Alpha-parvin; membrane, cytoplasm, cytoskeleton, c	97.07
2r8u_A	268	Microtubule-associated protein RP/EB family member	96.86
2qjx_A	127	Protein BIM1; calponin homology domain, protein bi	96.85
1wjo_A	124	T-plastin; CH domain, actin binding, structural ge	96.8
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	96.48
4abo_I	145	MAL3, microtubule integrity protein MAL3; structur	96.39
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	96.2
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	96.0
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	95.96
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	95.83
1wyl_A	116	NEDD9 interacting protein with calponin homology a	95.65
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	95.57
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	95.28
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	95.19
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	95.1
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	95.06
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	94.92
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	94.71
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	94.07
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	93.69
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	93.02
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	91.09
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	90.85

>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}

Probab=99.57  E-value=2.9e-16  Score=122.28  Aligned_cols=77  Identities=17%  Similarity=0.280  Sum_probs=55.5

Q ss_pred             CCchhhccCcccccchhhhhhhhhccCCCCCcHHHhHHhHHHHHHHHHHHhccccCCh-hhHHhhhhhhhhhhhhhcccc
Q psy607           29 YPNWHQLMNMAQMATPTATLVETRGLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNV-ANFMDRLDTGVTLCRGKSTFF  107 (129)
Q Consensus        29 ~p~~~~~~~~~~~a~~~~~~~~~rsirpfKssekyL~aMkEDLaeWI~~Ll~Ge~i~~-DnF~e~LkdGvlLCkLAN~Lq  107 (129)
                      +|++    |++ +.|.+..-.+--.-|+++...+|+..++ |+.+||+.++ |++++. ++|++.|+|||+||+|+|+|+
T Consensus        16 ~~~~----g~~-~~~~~~~~~~md~~r~~~~a~eyl~~~~-e~~~WIe~~l-g~~l~~~~~l~~~LrdGvvLCkL~N~l~   88 (193)
T 3i6x_A           16 RPHY----GSV-LDNERLTAEEMDERRRQNVAYEYLCHLE-EAKRWMEACL-GEDLPPTTELEEGLRNGVYLAKLGNFFS   88 (193)
T ss_dssp             -------------------CTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-SSCCCCGGGHHHHHTTSHHHHHHHHHHC
T ss_pred             cccc----ccc-ccccccCHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHh-CCCCCChHHHHHHhccHHHHHHHHHHHC
Confidence            5776    776 5565544334444578899999998888 9999999999 999976 599999999999999999999


Q ss_pred             cchHH
Q psy607          108 KSSIK  112 (129)
Q Consensus       108 pGSV~  112 (129)
                      ||+|.
T Consensus        89 Pg~vp   93 (193)
T 3i6x_A           89 PKVVS   93 (193)
T ss_dssp             TTTCC
T ss_pred             CCCCC
Confidence            99984

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}

Probab=99.57  E-value=9.4e-16  Score=118.45  Aligned_cols=58  Identities=19%  Similarity=0.307  Sum_probs=53.8

Q ss_pred             ccCCCCCcHHHhHHhHHHHHHHHHHHhccccCCh-hhHHhhhhhhhhhhhhhcccccchHH
Q psy607           53 GLRPFKSSEEYLYAMKEDLAEWLNNLYVELHMNV-ANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        53 sirpfKssekyL~aMkEDLaeWI~~Ll~Ge~i~~-DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      +.|++|++.+|+..+ +|+++||+.++ |++++. ++|++.|+|||+||+|||+|+||+|.
T Consensus        13 ~~~~~k~a~~y~~~~-~e~~~WIe~~l-g~~lp~~~~f~~~LrDGvvLCkL~N~l~P~sv~   71 (190)
T 2rr8_A           13 ERRRQNVAYEYLCHL-EEAKRWMEACL-GEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVS   71 (190)
T ss_dssp             SSCSCHHHHHHHHHH-HHHHHHHHHHS-CCCCCCHHHHHHHHSSHHHHHHHHHHSCTTTSC
T ss_pred             HHHHHHHHHhhcHHH-HHHHHHHHHHh-CCCCCChhHHHHHHcchhhHHHHHHHhCCCCcc
Confidence            348899999999999 99999999999 999964 79999999999999999999999983

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1

Probab=99.56  E-value=4.9e-16  Score=115.39  Aligned_cols=53  Identities=23%  Similarity=0.310  Sum_probs=49.3

Q ss_pred             CcHHHhHHhHHHHHHHHHHHhccccCC-----hhhHHhhhhhhhhhhhhhccccc---chHH
Q psy607           59 SSEEYLYAMKEDLAEWLNNLYVELHMN-----VANFMDRLDTGVTLCRGKSTFFK---SSIK  112 (129)
Q Consensus        59 ssekyL~aMkEDLaeWI~~Ll~Ge~i~-----~DnF~e~LkdGvlLCkLAN~Lqp---GSV~  112 (129)
                      |+++|+.++++|+++||+.++ |++++     .++|++.|+||||||+|||+|+|   |+|.
T Consensus         2 s~~~y~~~~e~e~~~WIe~~l-~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~   62 (144)
T 1ujo_A            2 SSGSSGEELEERLVEWIVVQC-GPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVK   62 (144)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHH-CTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSC
T ss_pred             CcccCCHHHHHHHHHHHHHHh-CCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcc
Confidence            688999999999999999999 99985     47999999999999999999999   7775

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.56  E-value=5.3e-16  Score=114.28  Aligned_cols=54  Identities=28%  Similarity=0.487  Sum_probs=50.7

Q ss_pred             CCCcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           57 FKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        57 fKssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      -|+.++|+.++++++.+||+.++ |+++ .++|++.|+|||+||+|+|+|+||+|.
T Consensus         8 ~k~~~ky~~~~~~e~~~WIe~~l-~~~~-~~~l~~~L~DGvvLCkL~N~l~P~~v~   61 (136)
T 1wyp_A            8 NKLAQKYDHQREQELREWIEGVT-GRRI-GNNFMDGLKDGIILCEFINKLQPGSVK   61 (136)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHT-CCCC-CSCTTHHHHTSHHHHHHHHHHSTTSSS
T ss_pred             HHHHccCCHHHHHHHHHHHHHHh-CCCC-cHHHHHHHccHHhHHHHHHhhCCCCcc
Confidence            57899999999999999999999 9999 568999999999999999999999984

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.55  E-value=6.8e-16  Score=115.03  Aligned_cols=54  Identities=20%  Similarity=0.363  Sum_probs=50.7

Q ss_pred             CCCcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           57 FKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        57 fKssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      -|+.++|+.++++++.+||+.++ |+++ .++|++.|+|||+||+|||+|+||+|.
T Consensus         8 ~k~~~ky~~~~~~e~~~WIe~~l-~~~i-~~~l~~~L~DGvvLCkL~N~l~P~~v~   61 (146)
T 1wyn_A            8 NRLLSKYDPQKEAELRTWIEGLT-GLSI-GPDFQKGLKDGTILCTLMNKLQPGSVP   61 (146)
T ss_dssp             CCCCSCCCTTHHHHHHHHHHHHH-CCCC-CSCHHHHHHTTSHHHHHHHHHCTTSCS
T ss_pred             HHHHccCCHHHHHHHHHHHHHHh-CCCC-cHHHHHHHccHHHHHHHHHHhCCCCcc
Confidence            57899999999999999999999 9999 578999999999999999999999984

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.5e-15  Score=113.90  Aligned_cols=55  Identities=20%  Similarity=0.433  Sum_probs=51.2

Q ss_pred             CCCcHHHhHHhHHHHHHHHHHHhccccCCh-----hhHHhhhhhhhhhhhhhccccc---chHH
Q psy607           57 FKSSEEYLYAMKEDLAEWLNNLYVELHMNV-----ANFMDRLDTGVTLCRGKSTFFK---SSIK  112 (129)
Q Consensus        57 fKssekyL~aMkEDLaeWI~~Ll~Ge~i~~-----DnF~e~LkdGvlLCkLAN~Lqp---GSV~  112 (129)
                      -|...+|+.++++|+.+||+.++ |++++.     ++|++.|+||||||+|||+|+|   |+|.
T Consensus         8 ~k~~~ky~~~~e~e~~~WIe~~l-~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~   70 (155)
T 1wym_A            8 QKIEKQYDADLEQILIQWITTQC-RKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVK   70 (155)
T ss_dssp             SSCCCSCCHHHHHHHHHHHHHHS-SSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCC
T ss_pred             HHHHccCCHHHHHHHHHHHHHHh-CCCCCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcC
Confidence            47789999999999999999999 999965     7999999999999999999999   8875

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.46  E-value=1.4e-14  Score=109.02  Aligned_cols=53  Identities=17%  Similarity=0.357  Sum_probs=46.9

Q ss_pred             CCcHHHhHHhHHHHHHHHHHHhccccCCh-hhHHhhhhhhhhhhhhhcccccchHH
Q psy607           58 KSSEEYLYAMKEDLAEWLNNLYVELHMNV-ANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        58 KssekyL~aMkEDLaeWI~~Ll~Ge~i~~-DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      ..+.+|+..+ +|+.+||+.++ |++++. ++|++.|+|||+||+|||+|+||+|.
T Consensus         4 ~~a~eyl~~~-~e~~~WIe~~l-~~~l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~   57 (159)
T 1p2x_A            4 LQAYDYLCRV-DEAKKWIEECL-GTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI   57 (159)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHH-TSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCC
T ss_pred             hHHHHHHHHH-HHHHHHHHHHh-CCCCCChHHHHHHHcchHHHHHHHHHhCCCCcc
Confidence            4467888655 89999999999 999964 69999999999999999999999974

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1

Probab=99.43  E-value=2e-14  Score=101.71  Aligned_cols=46  Identities=26%  Similarity=0.473  Sum_probs=42.1

Q ss_pred             HhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           66 AMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        66 aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      .+++|+.+||+.++ |+++ +++|++.|+|||+||+|+|+|+||+|..
T Consensus         3 ~~e~e~~~WIe~~l-~~~~-~~~l~~~L~dGvvLCkL~N~l~P~~v~k   48 (108)
T 1h67_A            3 QTERQLRVWIEGAT-GRRI-GDNFMDGLKDGVILCELINKLQPGSVQK   48 (108)
T ss_dssp             CSSHHHHHHHHHHH-SCCC-CSCHHHHHHHCSHHHHHHHHHSTTSSTT
T ss_pred             HHHHHHHHHHHHHh-CCCC-cHHHHHHHccHHHHHHHHHHhCCCCccc
Confidence            46789999999999 9999 5689999999999999999999999863

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.41  E-value=6.1e-14  Score=109.75  Aligned_cols=53  Identities=17%  Similarity=0.358  Sum_probs=48.2

Q ss_pred             CcHHHhH-HhHHHHHHHHHHHhccccCC-hhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           59 SSEEYLY-AMKEDLAEWLNNLYVELHMN-VANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        59 ssekyL~-aMkEDLaeWI~~Ll~Ge~i~-~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      ...+|.+ .+++|+.+||+.++ |++++ .++|++.|+||||||+|||+|+||+|.
T Consensus        47 ~~~~ye~l~~~~e~~~WIe~~l-~~~l~~~~~f~~~LrDGvvLCkLiN~l~P~sv~  101 (203)
T 1p5s_A           47 TLQAYDYLCRVDEAKKWIEECL-GTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI  101 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-TSCCCCGGGHHHHHTTSHHHHHHHHHHCTTSCC
T ss_pred             HHhhhhHHHHHHHHHHHHHHHh-CCCCCChHHHHHHHcchHHHHHHHHHhCCCCcc
Confidence            4677887 79999999999999 99986 479999999999999999999999984

>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}

Probab=99.26  E-value=1.3e-12  Score=95.77  Aligned_cols=48  Identities=25%  Similarity=0.395  Sum_probs=40.6

Q ss_pred             HHhHHHHHHHHHHHhcc-cc-----CChhhH-HhhhhhhhhhhhhhcccccchHHH
Q psy607           65 YAMKEDLAEWLNNLYVE-LH-----MNVANF-MDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        65 ~aMkEDLaeWI~~Ll~G-e~-----i~~DnF-~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      .++++++++||++++ | +.     .++++| .+.|+|||+||+|+|+|+||+|..
T Consensus        11 ~~~~~e~~~WI~~~~-~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~k   65 (126)
T 2l3g_A           11 MNSAEQTVTWLITLG-VLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEK   65 (126)
T ss_dssp             CCHHHHHHHHHHHTT-SSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCSC
T ss_pred             HHHHHHHHHHHHHHh-CccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCCc
Confidence            457889999999997 5 22     367788 599999999999999999999873

>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.24  E-value=2.3e-12  Score=93.41  Aligned_cols=46  Identities=24%  Similarity=0.457  Sum_probs=39.4

Q ss_pred             HhHHHHHHHHHHHhccccC------Chhh-HHhhhhhhhhhhhhhcccccchHH
Q psy607           66 AMKEDLAEWLNNLYVELHM------NVAN-FMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        66 aMkEDLaeWI~~Ll~Ge~i------~~Dn-F~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      +.++++++||++++ +++.      +.++ |++.|+|||+||+|+|+|+||+|.
T Consensus         6 ~~e~e~~~WI~~~~-~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~   58 (121)
T 1wyr_A            6 SGEEQIVTWLISLG-VLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVE   58 (121)
T ss_dssp             CSHHHHHHHHHHHT-SSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCS
T ss_pred             HHHHHHHHHHHHhc-CcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCC
Confidence            45789999999998 6443      4566 579999999999999999999987

>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A

Probab=98.82  E-value=1.6e-09  Score=79.97  Aligned_cols=42  Identities=24%  Similarity=0.545  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      +.||++|||+++ +++++.-   |.|+||+++|||+|.|.||+|.-
T Consensus         7 r~ElL~WIN~~L-~~~~~ki---E~L~~Ga~yCqlmd~l~Pg~v~l   48 (123)
T 2qjz_A            7 RHDMLAWINESL-QLNLTKI---EQLCSGAAYCQFMDMLFPGSIAL   48 (123)
T ss_dssp             HHHHHHHHHHHH-TCCCCCG---GGGGGSHHHHHHHHHHSTTSSCG
T ss_pred             HHHHHHHHHHHH-CCCCchH---HHcCchHHHHHHHHHHccCCCcH
Confidence            569999999999 9999755   78999999999999999999863

>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=4.1e-09  Score=81.08  Aligned_cols=45  Identities=18%  Similarity=0.435  Sum_probs=39.6

Q ss_pred             hHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           64 LYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        64 L~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      ...-+.||++||++++ +++++.-   |.|+||+++|||+|.|.||+|.
T Consensus        20 ~~~sr~ElL~WIN~~L-~~~~~ki---E~L~~GaayCQLmd~L~PgsV~   64 (159)
T 1wyo_A           20 ENLSRHDMLAWVNDSL-HLNYTKI---EQLCSGAAYCQFMDMLFPGCVH   64 (159)
T ss_dssp             CCCCHHHHHHHHHHHS-CCCCSSG---GGGGGCHHHHHHHHHHSTTSSC
T ss_pred             CchhHHHHHHHHHHHH-CCCCchh---hhcCccHHHHHHHHHHccCCCc
Confidence            3445679999999999 9999755   7899999999999999999986

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=98.67  E-value=7.2e-09  Score=88.67  Aligned_cols=45  Identities=22%  Similarity=0.388  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHHHhccccCC---------hhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           67 MKEDLAEWLNNLYVELHMN---------VANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        67 MkEDLaeWI~~Ll~Ge~i~---------~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      +-.+.++||++++ +++.+         +++|.+.|+|||+||+|+|+|+||+|.
T Consensus         6 ~w~~~~~Wl~~~~-~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~   59 (587)
T 3ky9_A            6 LWRQCTHWLIQCR-VLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAIN   59 (587)
T ss_dssp             HHHHHHHHHHHTT-CSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSC
T ss_pred             HHHHHHHHHHHhC-CCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCC
Confidence            3458999999987 55554         689999999999999999999999984

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=1.2e-08  Score=73.32  Aligned_cols=55  Identities=16%  Similarity=0.172  Sum_probs=46.8

Q ss_pred             CCCcHHHhHHhHHHHHHHHHHHhcccc-C--ChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           57 FKSSEEYLYAMKEDLAEWLNNLYVELH-M--NVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        57 fKssekyL~aMkEDLaeWI~~Ll~Ge~-i--~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      -|+..++....+..+.+|||..+ ++. +  ..++|++.|+||++||+|+|.|.|+++.
T Consensus         9 ~~~~~~~~~~q~~~f~~WIN~~L-~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~   66 (129)
T 2yrn_A            9 RKPVIHGLEDQKRIYTDWANHYL-AKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIE   66 (129)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHH-HHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCT
T ss_pred             hcccchhhHHHHHHHHHHHHHHh-cccCCCccchhHHHHcccHHHHHHHHHHHhcCCcc
Confidence            34667777888889999999999 543 3  3689999999999999999999999886

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=98.43  E-value=9.8e-08  Score=75.51  Aligned_cols=54  Identities=20%  Similarity=0.407  Sum_probs=43.9

Q ss_pred             CCcHHHhHHhHHHHHHHHHHHhccc--------cC--ChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           58 KSSEEYLYAMKEDLAEWLNNLYVEL--------HM--NVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        58 KssekyL~aMkEDLaeWI~~Ll~Ge--------~i--~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      ++..+|....+..+..|||..+ ++        ++  ..++|++.|+||++||+|+|+|.|+++.
T Consensus        16 ~~~~~~~~~q~~~f~~WiN~~L-~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~   79 (275)
T 1aoa_A           16 GTQHSYSEEEKYAFVNWINKAL-ENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTID   79 (275)
T ss_dssp             -----CCHHHHHHHHHHHHHHT-TTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSC
T ss_pred             CCccccCHHHHHHHHHHHHHHh-ccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCC
Confidence            4567888899999999999999 65        34  3579999999999999999999999885

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=98.20  E-value=3.9e-07  Score=71.93  Aligned_cols=54  Identities=9%  Similarity=0.172  Sum_probs=44.6

Q ss_pred             CcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           59 SSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        59 ssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      ...++....+.....|||.++.+.....++|++.|+||++||+|+|.|.|+.+.
T Consensus        20 ~~~~~~~~q~~~f~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~   73 (254)
T 1wku_A           20 LDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLP   73 (254)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCC
T ss_pred             hhccchHHHHHHHHHHHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCCCC
Confidence            355677777889999999999544567789999999999999999999999875

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=98.20  E-value=6.1e-07  Score=76.67  Aligned_cols=53  Identities=13%  Similarity=0.221  Sum_probs=44.0

Q ss_pred             cHHHhHHhHHHHHHHHHHHhcccc--------C--ChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           60 SEEYLYAMKEDLAEWLNNLYVELH--------M--NVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        60 sekyL~aMkEDLaeWI~~Ll~Ge~--------i--~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      ..+|....+..+.+|||..+ ++.        +  ..++|++.|+||++||+|+|+|.|+++..
T Consensus         6 ~~~~~~~q~~~f~~WIN~~L-~~~~~~~~~lpi~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~   68 (513)
T 1rt8_A            6 MHTINEEERREFIKHINSVL-AGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDE   68 (513)
T ss_dssp             ---CCHHHHHHHHHHHHHHH-TTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCG
T ss_pred             cCcccHHHHHHHHHHHHHhc-cCCccccccCCCCCchHHHHHHhhcHHHHHHHHHHHcCCCcch
Confidence            46788899999999999999 653        3  35699999999999999999999998863

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=98.17  E-value=6.7e-07  Score=76.15  Aligned_cols=49  Identities=14%  Similarity=0.249  Sum_probs=40.1

Q ss_pred             HhHHhHHHHHHHHHHHhcccc--------C--ChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           63 YLYAMKEDLAEWLNNLYVELH--------M--NVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        63 yL~aMkEDLaeWI~~Ll~Ge~--------i--~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      +..+.+..+.+|||..+ ++.        +  ..++|++.|+||++||+|+|+|.|+++.
T Consensus         4 ~~~~q~~~f~~WIN~~L-~~~~~~~~~l~~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~   62 (506)
T 1pxy_A            4 GIQSEKGPFVQHINRYL-GDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTID   62 (506)
T ss_dssp             ---CTHHHHHHHHHHHH-TTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSC
T ss_pred             CCHHHHHHHHHHHHHHh-ccCccccccCCCCCchhHHHHHhcchHHHHHHHHHHcCCCCC
Confidence            44566778999999999 654        2  3569999999999999999999999985

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=98.16  E-value=5.4e-07  Score=70.48  Aligned_cols=54  Identities=11%  Similarity=0.223  Sum_probs=44.4

Q ss_pred             CCcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchH
Q psy607           58 KSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI  111 (129)
Q Consensus        58 KssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV  111 (129)
                      ....++....+.....|||..+.+......++++.|+||++||+|+|+|.++.+
T Consensus        12 ~~~~~~~~~q~~~f~~WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~~   65 (245)
T 2wa7_A           12 AEDAPWKKIQQNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRM   65 (245)
T ss_dssp             ---CGGGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCC
T ss_pred             hccchHHHHHHHHHHHHHHHhccccCCCccCHHHHcccHHHHHHHHHHHcCCCC
Confidence            345577778888999999999954455677999999999999999999999877

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=98.06  E-value=1.2e-06  Score=71.61  Aligned_cols=58  Identities=14%  Similarity=0.277  Sum_probs=50.0

Q ss_pred             CCCCCcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           55 RPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        55 rpfKssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      ...|.++++....+.....|||..+........++++.|+||++||+|.|.|.++.+.
T Consensus        62 ~~~~~~~e~~~vQkktft~WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~  119 (296)
T 3f7p_A           62 AVIRIADERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLP  119 (296)
T ss_dssp             -CEECCCHHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCCC
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHcccCCCCcccHHHHHhhHHHHHHHHHHhcCCccc
Confidence            4558889999999999999999999434457789999999999999999999998764

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=97.96  E-value=2.5e-06  Score=66.24  Aligned_cols=51  Identities=16%  Similarity=0.259  Sum_probs=43.4

Q ss_pred             HHHhHHhHHHHHHHHHHHhccc------cCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           61 EEYLYAMKEDLAEWLNNLYVEL------HMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        61 ekyL~aMkEDLaeWI~~Ll~Ge------~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      .++....+.....|||..+ +.      +....+|++.|+||++||+|+|.|.++.+.
T Consensus         7 ~e~~~~q~~~f~~WiN~~L-~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~   63 (245)
T 1sh5_A            7 DERDRVQKKTFTKWVNKHL-IKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLP   63 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-TTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhc-cccccccCCCCccchHhhccCHHHHHHHHHHhcCcccc
Confidence            4566777889999999999 55      346779999999999999999999998764

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=97.80  E-value=3.9e-06  Score=65.50  Aligned_cols=54  Identities=17%  Similarity=0.258  Sum_probs=43.9

Q ss_pred             CCcHHHhHHhHHHHHHHHHHHhcccc-C-ChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           58 KSSEEYLYAMKEDLAEWLNNLYVELH-M-NVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        58 KssekyL~aMkEDLaeWI~~Ll~Ge~-i-~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      ....++....+.....|||..+ +.. . ...+|++.|+||++||+|+|+|.++.+.
T Consensus         8 ~~~~e~~~~q~~~f~~WiN~~L-~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~   63 (246)
T 1dxx_A            8 EDSYEREDVQKKTFTKWVNAQF-SKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLP   63 (246)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHHH-HHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCC
T ss_pred             ccchHHHHHHHHHHHHHHHHhc-cccCCCCccCHHHHhCcHHHHHHHHHHHcCCcCC
Confidence            3456677788889999999999 543 2 5678999999999999999999887653

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=97.52  E-value=1.7e-05  Score=69.38  Aligned_cols=52  Identities=10%  Similarity=0.187  Sum_probs=44.0

Q ss_pred             HHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           61 EEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        61 ekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      .++....+.....|||.++.+..+...++++.|+||++||+|.|.|.|+.+.
T Consensus         3 ~~~~~~q~~~f~~Win~~L~~~~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~   54 (863)
T 1sjj_A            3 PAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLA   54 (863)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHCSCCCCCSSTTSSCHHHHHHHHHTSCCCCC
T ss_pred             hHHHHHHHHHHHHHHHHHhccCCCCccCHHHHhcCHHHHHHHHHHhCCCcee
Confidence            3455666778999999999655567789999999999999999999999774

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=97.36  E-value=5.8e-05  Score=60.91  Aligned_cols=53  Identities=13%  Similarity=0.235  Sum_probs=43.3

Q ss_pred             CcHHHhHHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchH
Q psy607           59 SSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI  111 (129)
Q Consensus        59 ssekyL~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV  111 (129)
                      ...++....+.-...|||..+.+......++++.|+||++||+|.+.|.++.+
T Consensus        40 ~d~~w~~vQkktft~WiN~~L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l   92 (272)
T 3hoc_A           40 EDAPWKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKM   92 (272)
T ss_dssp             --CGGGGHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSCC
T ss_pred             hChhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHhhHHHHHHHHHHHcCCcc
Confidence            34455556666799999999865566788999999999999999999999877

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=97.28  E-value=6.8e-05  Score=64.06  Aligned_cols=45  Identities=18%  Similarity=0.394  Sum_probs=38.3

Q ss_pred             HhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           66 AMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        66 aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      ..+.....|||++.  .+...++|++.|+||++||+|.+++.||++.
T Consensus       285 ~q~k~f~~WiN~~~--~~~~v~~l~~DL~DG~~L~~Lle~l~~g~v~  329 (513)
T 1rt8_A          285 REARVFTLWLNSLD--VTPSIHDFFNNLRDGLILLQAYDKITPNTVN  329 (513)
T ss_dssp             HHHHHHHHHHHHTT--CSSCCSCHHHHTTTSHHHHHHHHHHSTTCCC
T ss_pred             HHHHHHHHHHHhcC--CCCCccCHHHHHhhHHHHHHHHHHhCCCCcc
Confidence            34567899999985  4556789999999999999999999999874

>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*

Probab=97.07  E-value=0.00017  Score=52.46  Aligned_cols=47  Identities=17%  Similarity=0.224  Sum_probs=39.1

Q ss_pred             HhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           66 AMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        66 aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      ..+.-...|+|..+....+..+++++.|+||++||+|.+.|.++.+.
T Consensus        22 ~q~ktft~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~   68 (131)
T 2vzc_A           22 VVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVP   68 (131)
T ss_dssp             HHHHHHHHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCC
Confidence            44566899999998544567889999999999999999999987664

>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A

Probab=96.86  E-value=0.00035  Score=57.51  Aligned_cols=49  Identities=20%  Similarity=0.526  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHHHHHhhcC
Q psy607           68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYCP  120 (129)
Q Consensus        68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~~~~~p  120 (129)
                      +.||+.|||+++ ..+++.   .|.|.+|++.||++..|.||+|---+..|.+
T Consensus        17 R~elL~WiN~~L-~~~~~k---iEel~tGaayCQlmd~l~P~~i~l~kVkf~a   65 (268)
T 2r8u_A           17 RHDMLAWINESL-QLNLTK---IEQLCSGAAYCQFMDMLFPGSIALKKVKFQA   65 (268)
T ss_dssp             HHHHHHHHHHHH-TCCCCC---GGGGGGSHHHHHHHHHHSTTSSCGGGCCTTC
T ss_pred             HHHHHHHHHHHh-cCCcch---HHHcccchHHHHHHHHHccCCCchhhccCCC
Confidence            458999999999 877743   4679999999999999999998765555554

>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}

Probab=96.85  E-value=0.00032  Score=52.06  Aligned_cols=46  Identities=22%  Similarity=0.568  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHHHHHhh
Q psy607           68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSY  118 (129)
Q Consensus        68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~~~~  118 (129)
                      +-||+.|||+++ ..+++.   .|.|.+|++.||+.+.|. |+|---++.|
T Consensus        12 R~elL~WiN~~L-~~n~~k---iEel~tGaayCQl~d~l~-g~v~l~kVkf   57 (127)
T 2qjx_A           12 RTELLTWLNGLL-NLNYKK---IEECGTGAAYCQIMDSIY-GDLPMNRVKF   57 (127)
T ss_dssp             HHHHHHHHHHHH-TCCCCS---GGGGGGSHHHHHHHHHHH-CCSCGGGSCT
T ss_pred             HHHHHHHHHHHH-cCCccH---HHHccchHHHHHHHhhhc-cccCccccCC
Confidence            459999999999 888866   788999999999999998 5554434444

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A

Probab=96.80  E-value=0.00028  Score=51.93  Aligned_cols=46  Identities=9%  Similarity=0.234  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHhc--cccCChhhHH-hhhhhhhhhhhhhcccccchHHH
Q psy607           68 KEDLAEWLNNLYV--ELHMNVANFM-DRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        68 kEDLaeWI~~Ll~--Ge~i~~DnF~-e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      ++++..|.|.-+.  |......||- ..|+||+.+|.|.+.|.|++|.+
T Consensus         9 d~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~   57 (124)
T 1wjo_A            9 DDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINY   57 (124)
T ss_dssp             CHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCT
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCH
Confidence            4578999999875  5556778999 99999999999999999999864

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=96.48  E-value=0.00077  Score=57.39  Aligned_cols=46  Identities=20%  Similarity=0.237  Sum_probs=38.8

Q ss_pred             HHhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           65 YAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        65 ~aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      ...+.....|||.++  .+....+|++.|+||++||+|.++|.++++.
T Consensus       275 ~~q~ktf~~WiN~~~--~~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~  320 (506)
T 1pxy_A          275 CRDERCYRLWINSLG--IDSYVNNVFEDVRNGWILLEVLDKVSPSSVN  320 (506)
T ss_dssp             HHHHHHHHHHHTTTT--CSSCCSCHHHHTTTSHHHHHHHHHHSTTCCC
T ss_pred             HHHHHHHHHHHHhcC--CCCCcccHHHHHHhHHHHHHHHHHHcCCccc
Confidence            345567899999986  3466789999999999999999999999875

>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}

Probab=96.39  E-value=0.0017  Score=49.44  Aligned_cols=47  Identities=13%  Similarity=0.392  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHHHHHhhc
Q psy607           68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYC  119 (129)
Q Consensus        68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~~~~~  119 (129)
                      +.||+.|||+++ ..+++.   .|.|.+|++.||+...|. |+|.--+..|.
T Consensus         8 R~eLL~WiN~~L-~~n~tk---IE~l~sGAaYCQlmD~lf-g~i~l~kVkf~   54 (145)
T 4abo_I            8 RQELLAWINQVT-SLGLTR---IEDCGKGYAMIQIFDSIY-QDIPLKKVNFE   54 (145)
T ss_dssp             HHHHHHHHHHHH-TCCCCS---GGGGGGSHHHHHHHHHHH-CCSCTTTSCSS
T ss_pred             HHHHHHHHHHHc-CCCcch---HHHccccHHHHHHHHHHh-cCcchhhcccC
Confidence            459999999999 777743   467999999999999999 77754444443

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.20  E-value=0.0016  Score=46.47  Aligned_cols=47  Identities=17%  Similarity=0.351  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      .++.|+.|.+..+.+- .+...||-...+||..+|.|++.+.|+.+++
T Consensus        10 ~~~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~   57 (119)
T 2d89_A           10 ASQSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDY   57 (119)
T ss_dssp             CHHHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCG
T ss_pred             HHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCh
Confidence            4678999999999532 4677899999999999999999999998753

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A

Probab=96.00  E-value=0.0018  Score=46.97  Aligned_cols=48  Identities=21%  Similarity=0.472  Sum_probs=40.8

Q ss_pred             HhHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           66 AMKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        66 aMkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      ..++.|+.|.+..+.+- .+...||-...+||..+|.|++.+.|+.+++
T Consensus         7 ~~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~   55 (128)
T 2d87_A            7 GIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDY   55 (128)
T ss_dssp             CHHHHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCS
T ss_pred             CHHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCH
Confidence            34678999999999532 4678999999999999999999999998753

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=95.96  E-value=0.0016  Score=53.58  Aligned_cols=41  Identities=15%  Similarity=0.317  Sum_probs=35.5

Q ss_pred             HHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchH
Q psy607           71 LAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI  111 (129)
Q Consensus        71 LaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV  111 (129)
                      ...|||+.|.+......++++.|+||++||+|.+.|.+..+
T Consensus        22 Ft~WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l   62 (347)
T 4b7l_A           22 FTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRM   62 (347)
T ss_dssp             HHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCcc
Confidence            57899999865566778999999999999999999987765

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A

Probab=95.83  E-value=0.0032  Score=44.27  Aligned_cols=47  Identities=17%  Similarity=0.188  Sum_probs=39.7

Q ss_pred             hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      -++.|+.|.+..+.|- .+...||-...+||..+|.|++.+.|+.+++
T Consensus         4 ~k~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~   51 (109)
T 1bkr_A            4 AKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDF   51 (109)
T ss_dssp             HHHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCG
T ss_pred             HHHHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCCCH
Confidence            4678999999997433 3577899999999999999999999998753

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A

Probab=95.65  E-value=0.0026  Score=45.16  Aligned_cols=46  Identities=15%  Similarity=0.330  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      -++.|+.|.+..+.+- .+...||-...+||..+|.|++.+.|+.++
T Consensus         8 ~~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid   54 (116)
T 1wyl_A            8 TQEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLE   54 (116)
T ss_dssp             SHHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSCC
T ss_pred             HHHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCCC
Confidence            4678999999997432 367789999999999999999999999875

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1

Probab=95.57  E-value=0.005  Score=43.89  Aligned_cols=47  Identities=15%  Similarity=0.169  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      -++-|+.|.+..+.|- .+...||-...+||..+|.|++.+.|+.+++
T Consensus         9 ~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~   56 (118)
T 1bhd_A            9 SEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSW   56 (118)
T ss_dssp             HHHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCH
T ss_pred             HHHHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCH
Confidence            4567899999998543 3677899999999999999999999998864

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=95.28  E-value=0.0059  Score=47.98  Aligned_cols=48  Identities=25%  Similarity=0.340  Sum_probs=40.5

Q ss_pred             HhHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           66 AMKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        66 aMkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      ..++.|+.|.+..+.|- .+...||-..+.||..+|.|++.+.|+.+.+
T Consensus       140 ~~~~~LL~W~~~~~~~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~id~  188 (254)
T 1wku_A          140 SAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDY  188 (254)
T ss_dssp             EHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCTTSCCG
T ss_pred             cHHHHHHHHHHHHccCCCCCcCCCCccchhhHHHHHHHHHHHCCCcccc
Confidence            34678999999888543 4678999999999999999999999998753

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=95.19  E-value=0.0087  Score=46.28  Aligned_cols=49  Identities=16%  Similarity=0.147  Sum_probs=41.0

Q ss_pred             HhHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHHH
Q psy607           66 AMKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQ  114 (129)
Q Consensus        66 aMkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~  114 (129)
                      ..++.|+.|.+..+.+- .+...||-..++||.++|.|.+.+.|+.+.+-
T Consensus       133 ~~~~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~  182 (245)
T 1sh5_A          133 TAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMN  182 (245)
T ss_dssp             CHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHH
T ss_pred             CHHHHHHHHHHHHhccCCCcccCCccccccchHHHHHHHHHHCCCCCCHH
Confidence            34667999999998532 46778999999999999999999999988753

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A

Probab=95.10  E-value=0.0034  Score=44.99  Aligned_cols=46  Identities=17%  Similarity=0.280  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      -++.|+.|.+..+.+- .+...||-...+||..+|.|++.+.|+.++
T Consensus        10 ~~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid   56 (121)
T 2d88_A           10 RSSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLID   56 (121)
T ss_dssp             SSCHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSC
T ss_pred             HHHHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcCC
Confidence            3557899999999432 467789999999999999999999999775

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}

Probab=95.06  E-value=0.0045  Score=44.74  Aligned_cols=46  Identities=17%  Similarity=0.217  Sum_probs=38.9

Q ss_pred             hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      -++.|+.|.+..+.|- .+...||-...+||..+|.|++.+.|..++
T Consensus         8 ~k~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid   54 (127)
T 1wyq_A            8 AKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLD   54 (127)
T ss_dssp             STHHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCC
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcCC
Confidence            3567899999997433 367789999999999999999999999775

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=94.92  E-value=0.0087  Score=46.57  Aligned_cols=44  Identities=18%  Similarity=0.236  Sum_probs=38.8

Q ss_pred             HhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchH
Q psy607           66 AMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI  111 (129)
Q Consensus        66 aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV  111 (129)
                      .-++.|+.|.+..+++  +...||-+.++||..+|.|.+.+.|+.+
T Consensus       143 ~~~~~LL~W~~~~~~~--~~v~nFs~s~~dG~a~~aLi~~~~P~~i  186 (245)
T 2wa7_A          143 TPKQRLLGWIQNKIPY--LPITNFNQNWQDGKALGALVDSCAPGLC  186 (245)
T ss_dssp             CHHHHHHHHHHHHSTT--SCCCCSSGGGTTSHHHHHHHHHHSTTSS
T ss_pred             cHHHHHHHHHHHhCCC--CCCCCCcccchhhHHHHHHHHHHCcccc
Confidence            3478999999999954  5668999999999999999999999987

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=94.71  E-value=0.012  Score=45.70  Aligned_cols=48  Identities=17%  Similarity=0.203  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHHH
Q psy607           67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQ  114 (129)
Q Consensus        67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~  114 (129)
                      -++.|+.|.+..+.+- .+...||-..++||..+|.|.+.+.|+.+.+-
T Consensus       136 ~~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~  184 (246)
T 1dxx_A          136 SEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWN  184 (246)
T ss_dssp             HHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHH
T ss_pred             HHHHHHHHHHHHhccCCCCCcCCCcccchhHHHHHHHHHHHCcCccchh
Confidence            4678999999988432 46778999999999999999999999987643

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=94.07  E-value=0.019  Score=46.89  Aligned_cols=48  Identities=17%  Similarity=0.144  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHHH
Q psy607           67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQ  114 (129)
Q Consensus        67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~  114 (129)
                      -++.|+.|.+..+.+- .+...||-...+||.++|.|++.+.|+.|.+-
T Consensus       190 ~k~~LL~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~  238 (296)
T 3f7p_A          190 AKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMN  238 (296)
T ss_dssp             HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHHCcCccCHH
Confidence            4667999999998532 46778999999999999999999999988753

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=93.69  E-value=0.023  Score=46.74  Aligned_cols=44  Identities=18%  Similarity=0.236  Sum_probs=38.4

Q ss_pred             HhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchH
Q psy607           66 AMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI  111 (129)
Q Consensus        66 aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV  111 (129)
                      ..++.|+.|.+.-+++  +...||-...+||..+|.|++.+.|+.+
T Consensus       140 ~~k~~LL~W~~~~~~~--~~v~nF~~sw~DG~af~aLi~~~~P~~~  183 (347)
T 4b7l_A          140 TPKQRLLGWIQNKIPY--LPITNFNQNWQDGKALGALVDSCAPGLC  183 (347)
T ss_dssp             CHHHHHHHHHHHHCTT--SCCCCSSGGGTTSHHHHHHHHHHSTTSS
T ss_pred             hHHHHHHHHHHhhCCC--cccCCCCCCccchHHHHHHHHHhCCccc
Confidence            3578899999999855  4558999999999999999999999976

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=93.02  E-value=0.035  Score=44.66  Aligned_cols=44  Identities=18%  Similarity=0.276  Sum_probs=38.6

Q ss_pred             HhHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchH
Q psy607           66 AMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSI  111 (129)
Q Consensus        66 aMkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV  111 (129)
                      .-++.|+.|.+.-++|  +...||-...+||..+|.|++.+.|+.+
T Consensus       170 s~k~~LL~W~n~~~~~--~~I~nFs~sw~DG~af~aLi~~~~P~li  213 (272)
T 3hoc_A          170 TPKQRLLGWIQNKLPQ--LPITNFSRDWQSGRALGALVDSCAPGLC  213 (272)
T ss_dssp             CHHHHHHHHHHHHCTT--SCCCCSSGGGTTSHHHHHHHHHHSTTSS
T ss_pred             CHHHHHHHHHHhhCCC--CCCCChhhcccchHHHHHHHHHhCcccc
Confidence            3578899999999854  5568899999999999999999999987

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=91.09  E-value=0.038  Score=48.29  Aligned_cols=63  Identities=19%  Similarity=0.201  Sum_probs=46.3

Q ss_pred             hhhccCCCCCcH---HHhHHhHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           50 ETRGLRPFKSSE---EYLYAMKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        50 ~~rsirpfKsse---kyL~aMkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      =|.=|+.|..+.   +. ...++.|+.|.+..+.|- .+...||-..+.||.++|.|++.+.|+.|.+
T Consensus       103 ~w~l~~~~~~~~~~~~~-~~~~~~ll~W~~~~~~~~~~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~  169 (863)
T 1sjj_A          103 IWTIILRFAIQDISVEE-TSAKEGLLLWYQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDY  169 (863)
T ss_dssp             HHHHHSCCCCCCCCCCC-CCSTTTTHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHTTCCSSSCS
T ss_pred             HHHHHHHHhhcccchhc-cchHHHHHHHHHHhccCCCCCCCCCCccccccHHHHHHHHHHhCCCCcCh
Confidence            344555555432   11 123567999999888543 4677899999999999999999999998753

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=90.85  E-value=0.082  Score=41.52  Aligned_cols=43  Identities=14%  Similarity=0.149  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHHhc--cccCChhhHHhhhhhhhhhhhhhcccccch
Q psy607           67 MKEDLAEWLNNLYV--ELHMNVANFMDRLDTGVTLCRGKSTFFKSS  110 (129)
Q Consensus        67 MkEDLaeWI~~Ll~--Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGS  110 (129)
                      -++.|+.|.+..+.  |.. ...||-+.++||.++|.|.+.+.|+.
T Consensus       169 ~~~~LL~W~n~~l~~~g~~-~I~nF~~s~~DG~a~~aLi~~~~P~~  213 (275)
T 1aoa_A          169 PEELLLRWANFHLENSGWQ-KINNFSADIKDSKAYFHLLNQIAPKG  213 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCC-CCSCSSTTTTTSHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhHHHHHHHHHHCCCc
Confidence            36779999998763  333 27899999999999999999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d1ujoa_	144	a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [Ta	1e-05
d1p2xa_	159	a.40.1.1 (A:) Ras GTPase-activating-like protein r	3e-05

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Length = 144

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (93), Expect = 1e-05
 Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 4/47 (8%)

Query: 59  SSEEYLYAMKEDLAEWLNNLYVE----LHMNVANFMDRLDTGVTLCR 101
           SS      ++E L EW+                 F   L  GV L +
Sbjct: 2   SSGSSGEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSK 48

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.2 bits (91), Expect = 3e-05
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 55  RPFKSSEEYLYAMKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCR 101
           R    + +YL  + E   +W+           + F   L  GV L  
Sbjct: 1   RETLQAYDYLCRVDE-AKKWIEECLGTDLGPTSTFEQSLRNGVVLAL 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d1ujoa_	144	Transgelin {Mouse (Mus musculus) [TaxId: 10090]}	99.47
d1h67a_	108	Calponin {Chicken (Gallus gallus) [TaxId: 9031]}	99.37
d1p2xa_	159	Ras GTPase-activating-like protein rng2 {Fission y	99.08
d2qjza1	120	Microtubule-associated protein eb1, N-terminal mic	97.87
d1aoaa1	131	Fimbrin (Plastin), actin-crosslinking domain {Huma	97.84
d1wjoa_	124	Fimbrin (Plastin), actin-crosslinking domain {Huma	97.66
d1sh5a1	120	Actin binding domain of plectin {Human (Homo sapie	97.17
d1sh5a2	110	Actin binding domain of plectin {Human (Homo sapie	96.89
d1dxxa1	111	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	96.88
d1bkra_	108	beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}	96.88
d1aoaa2	116	Fimbrin (Plastin), actin-crosslinking domain {Huma	96.68
d1dxxa2	127	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	96.02
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	95.97
d1bhda_	108	Utrophin {Human (Homo sapiens) [TaxId: 9606]}	95.64
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	95.54
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	94.62
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	93.08
d1kw4a_	70	Polyhomeotic {Drosophila melanogaster [TaxId: 7227	81.08

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=4.1e-15  Score=109.54  Aligned_cols=54  Identities=22%  Similarity=0.272  Sum_probs=47.5

Q ss_pred             CcHHHhHHhHHHHHHHHHHHhccccC-----ChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           59 SSEEYLYAMKEDLAEWLNNLYVELHM-----NVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        59 ssekyL~aMkEDLaeWI~~Ll~Ge~i-----~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      ++.+|.+++++|+++||++++ |+++     +.++|++.|+|||+||+|||+|+||+|..
T Consensus         2 ~s~~~~~e~e~~~~~WI~~~~-g~~~~~~~~~~~~f~~~L~dGvvLCkL~N~l~P~~i~~   60 (144)
T d1ujoa_           2 SSGSSGEELEERLVEWIVVQC-GPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKP   60 (144)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHH-CTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCC
T ss_pred             CCccccHHHHHHHHHHHHHHh-CCccCCCCccHHHHHHHHhcChhHHHHHHHHcCCCCCC
Confidence            345677789999999999999 9998     34589999999999999999999998864

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.37  E-value=5.3e-14  Score=99.08  Aligned_cols=45  Identities=27%  Similarity=0.513  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           67 MKEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        67 MkEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      .++|+.+||++++ |+++. ++|.+.|+|||+||+|||+|+||+|..
T Consensus         4 ~e~e~~~Wie~~~-~~~~~-~~~~~~L~dGv~LC~L~N~l~pg~i~k   48 (108)
T d1h67a_           4 TERQLRVWIEGAT-GRRIG-DNFMDGLKDGVILCELINKLQPGSVQK   48 (108)
T ss_dssp             SSHHHHHHHHHHH-SCCCC-SCHHHHHHHCSHHHHHHHHHSTTSSTT
T ss_pred             HHHHHHHHHHHHh-CCCCc-hHHHHHHcCchhHHHHHHHHHhcCCCc
Confidence            3569999999999 99996 679999999999999999999999864

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.08  E-value=3.1e-11  Score=87.99  Aligned_cols=50  Identities=18%  Similarity=0.413  Sum_probs=43.1

Q ss_pred             HHhHHhHHHHHHHHHHHhccccC-ChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           62 EYLYAMKEDLAEWLNNLYVELHM-NVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        62 kyL~aMkEDLaeWI~~Ll~Ge~i-~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      +|+.-+ +|+.+||+.++ ++++ +.++|.+.|+|||+||+|+|+|.|+++..
T Consensus         8 e~l~~~-~e~~~Wi~~~l-~~~~~~~~dl~~~L~dGv~Lc~L~n~l~p~~i~~   58 (159)
T d1p2xa_           8 DYLCRV-DEAKKWIEECL-GTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIK   58 (159)
T ss_dssp             HHHHHH-HHHHHHHHHHH-TSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCCC
T ss_pred             HHHHHH-HHHHHHHHHHh-CCCCCChhHHHHHHhhHHHHHHHHHHHCCCCCce
Confidence            455444 46999999999 8888 67899999999999999999999998753

>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Microtubule-associated protein eb1, N-terminal microtubule binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2e-06  Score=61.64  Aligned_cols=50  Identities=20%  Similarity=0.523  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhhcccccchHHHHHHhhcCc
Q psy607           68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQRRSYCPE  121 (129)
Q Consensus        68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~~~~~~p~  121 (129)
                      +.||+.|||+++ +.+++.   .|.|.+|++.|||++.|.||+|.--+..|.+.
T Consensus         5 R~eLL~WiN~~L-~~~~~k---iEel~tGa~yCQl~d~l~Pg~i~l~kVkf~a~   54 (120)
T d2qjza1           5 RHDMLAWINESL-QLNLTK---IEQLCSGAAYCQFMDMLFPGSIALKKVKFQAK   54 (120)
T ss_dssp             HHHHHHHHHHHH-TCCCCC---GGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCC
T ss_pred             HHHHHHHHHHHh-CCChhh---HHHhcccHHHHHHHHHHCcCcchHhhhccCCC
Confidence            458999999999 777743   45699999999999999999988766665553

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.7e-06  Score=59.66  Aligned_cols=48  Identities=21%  Similarity=0.399  Sum_probs=39.6

Q ss_pred             HHhHHHHHHHHHHHhcccc----------CChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           65 YAMKEDLAEWLNNLYVELH----------MNVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        65 ~aMkEDLaeWI~~Ll~Ge~----------i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      +.-+.-...|+|..+ .+.          ...++|.+.|+||++||+|.+.|.|+++..
T Consensus         3 e~ek~~f~~WiN~~L-~~~~~~~~~~~~~~~v~dL~~Dl~DGv~L~~Lle~l~~~~i~~   60 (131)
T d1aoaa1           3 EEEKYAFVNWINKAL-ENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDE   60 (131)
T ss_dssp             HHHHHHHHHHHHHHT-TTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCG
T ss_pred             HHHHHHHHHHHHHHh-ccCccccccCCCCCcHhHHHHHHhhHHHHHHHHHHHcCCCCcc
Confidence            334456889999998 542          257899999999999999999999998875

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=5.1e-06  Score=57.61  Aligned_cols=45  Identities=9%  Similarity=0.259  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHhc--cccCChhhHH-hhhhhhhhhhhhhcccccchHH
Q psy607           68 KEDLAEWLNNLYV--ELHMNVANFM-DRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        68 kEDLaeWI~~Ll~--Ge~i~~DnF~-e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      ++.++.|+|..+.  |......||. ..|+||++||+|.+.|.|+.+.
T Consensus         9 e~~ll~WvN~~L~~~g~~~~i~~f~d~dl~DG~~L~~Ll~~l~p~~i~   56 (124)
T d1wjoa_           9 DDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCIN   56 (124)
T ss_dssp             CHHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCC
T ss_pred             HHHHHHHHHHHHHHcCCCCCcCcCCccccccHHHHHHHHHHHHhccCC
Confidence            3578999999874  4556778898 4999999999999999999885

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=5.7e-05  Score=51.50  Aligned_cols=43  Identities=14%  Similarity=0.351  Sum_probs=34.5

Q ss_pred             HHHHHHHHHhcc-----ccCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           70 DLAEWLNNLYVE-----LHMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        70 DLaeWI~~Ll~G-----e~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      -...|+|..+..     .+....+|.+.|+||++||+|.+.+.++.+.
T Consensus         9 ~ft~WiN~~L~~~~~~~~~~~V~dl~~dl~DG~~L~~Lle~l~~~~~~   56 (120)
T d1sh5a1           9 TFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLP   56 (120)
T ss_dssp             HHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHccccccccCCCCcchHHHHhccHHHHHHHHHHhCCCccc
Confidence            357899999832     1235679999999999999999999987653

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00021  Score=48.89  Aligned_cols=47  Identities=17%  Similarity=0.144  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      .++.|+.|.+..+.+- .++..||-....||.++|.|++.+.|+.+..
T Consensus         7 ~k~~LL~W~~~~~~~y~~v~v~nFs~sw~DG~afcaLih~~~P~~id~   54 (110)
T d1sh5a2           7 AKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDM   54 (110)
T ss_dssp             HHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCH
T ss_pred             HHHHHHHHHHHHcCCCCCeeccCCcccccCcHHHHHHHHHHCcccCCh
Confidence            5788999999999542 4678999999999999999999999998764

>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00011  Score=49.34  Aligned_cols=43  Identities=14%  Similarity=0.281  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHhc-cccCChhhHHhhhhhhhhhhhhhcccccchH
Q psy607           69 EDLAEWLNNLYV-ELHMNVANFMDRLDTGVTLCRGKSTFFKSSI  111 (129)
Q Consensus        69 EDLaeWI~~Ll~-Ge~i~~DnF~e~LkdGvlLCkLAN~LqpGSV  111 (129)
                      .-...|||..+. +......||.+.|+||++||+|.+.|.|+.+
T Consensus        11 ~~ft~WiN~~L~~~~~~~i~nl~~Dl~DG~~L~~Lle~l~~~~~   54 (111)
T d1dxxa1          11 KTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKL   54 (111)
T ss_dssp             HHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHccccCCcchhhHHHHhcchHHHHHHHHHHcCCcC
Confidence            346789999994 2223457899999999999999999988754

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00016  Score=48.90  Aligned_cols=46  Identities=17%  Similarity=0.220  Sum_probs=39.9

Q ss_pred             hHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           67 MKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        67 MkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      .|+.|+.|.+..+.|- .++..||-....||.++|.|++.+.|+.+.
T Consensus         3 ~k~~LL~W~~~~~~~y~~v~V~nFs~sw~DG~af~aLi~~~~P~~~~   49 (108)
T d1bkra_           3 AKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLID   49 (108)
T ss_dssp             HHHHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCC
T ss_pred             HHHHHHHHHHHHhcCCCCcCcccCCCcccCcHHHHHHHHHHCcCccc
Confidence            4678999999999543 467899999999999999999999998775

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00025  Score=47.18  Aligned_cols=44  Identities=16%  Similarity=0.145  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHH
Q psy607           69 EDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        69 EDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      +=++.|+|..+.+. .....||.+.++||++||.|.+.+.|+.+.
T Consensus        12 ~~lL~WvN~~l~~~~~~~I~nf~~dl~DG~~L~~Ll~~~~p~~~~   56 (116)
T d1aoaa2          12 ELLLRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQK   56 (116)
T ss_dssp             HHHHHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCS
T ss_pred             HHHHHHHHHHhccCCCceeeeccccccccHHHHHHHHHHCccccc
Confidence            45799999999522 245789999999999999999999998764

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0013  Score=45.70  Aligned_cols=49  Identities=16%  Similarity=0.197  Sum_probs=41.2

Q ss_pred             HhHHHHHHHHHHHhccc-cCChhhHHhhhhhhhhhhhhhcccccchHHHH
Q psy607           66 AMKEDLAEWLNNLYVEL-HMNVANFMDRLDTGVTLCRGKSTFFKSSIKEQ  114 (129)
Q Consensus        66 aMkEDLaeWI~~Ll~Ge-~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~~  114 (129)
                      ..++-|+.|.+..+.+= .+...||-...+||.++|.|++.+.|+.+.+.
T Consensus        16 ~~~~~LL~W~~~~~~~y~~v~v~NFs~sw~DG~a~~aLih~~~P~li~~~   65 (127)
T d1dxxa2          16 NSEKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWN   65 (127)
T ss_dssp             CHHHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHH
T ss_pred             CHHHHHHHHHHHHhccCCCccccCCccccccHHHHHHHHHHHCcccccch
Confidence            34667899999999432 46779999999999999999999999988753

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.97  E-value=0.0015  Score=53.98  Aligned_cols=44  Identities=16%  Similarity=0.269  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHhccc----------cCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           69 EDLAEWLNNLYVEL----------HMNVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        69 EDLaeWI~~Ll~Ge----------~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      .-...|||..+ .+          +...+++++.|+||++||+|.|.+.++.+.+
T Consensus         4 ~tft~WiN~~L-~~~~~~~~~lpi~~~v~dL~~dl~DG~~L~~Lle~ls~~~l~~   57 (500)
T d1pxya_           4 GPFVQHINRYL-GDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDE   57 (500)
T ss_dssp             HHHHHHHHHHH-TTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCG
T ss_pred             hHHHHHHHHHh-ccCccccccCCCCCcHHHHHHHhhhHHHHHHHHHHHcCCccch
Confidence            34578999999 44          2356799999999999999999999887753

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0022  Score=43.18  Aligned_cols=46  Identities=15%  Similarity=0.168  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHhcc-ccCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           68 KEDLAEWLNNLYVE-LHMNVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        68 kEDLaeWI~~Ll~G-e~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      ++=|+.|.+..+.+ ..++..||-...+||.++|.|++.+.|..+..
T Consensus         7 ~~~LL~W~~~~~~~y~~v~v~nFs~sw~DG~a~caLih~~~P~~i~~   53 (108)
T d1bhda_           7 EKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSW   53 (108)
T ss_dssp             HHHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCH
T ss_pred             HHHHHHHHHHHhccCCCcCcccCccccccchHHHHHHHHHCccccCh
Confidence            46689999999953 24678899999999999999999999998764

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.54  E-value=0.0036  Score=51.36  Aligned_cols=46  Identities=15%  Similarity=0.304  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHhccc---------cCChhhHHhhhhhhhhhhhhhcccccchHHH
Q psy607           68 KEDLAEWLNNLYVEL---------HMNVANFMDRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        68 kEDLaeWI~~Ll~Ge---------~i~~DnF~e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      +.-...|||..+.+.         +...+++++.|+||++||+|.|.+.++.++.
T Consensus         6 k~tft~WiN~~L~~~~~l~~~~p~~~~v~dL~~dl~DG~~L~~Lle~l~~~~i~~   60 (505)
T d1rt8a_           6 RREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDE   60 (505)
T ss_dssp             HHHHHHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCG
T ss_pred             HHHHHHHHHHHhccCccccccCCCCcchhhHHHHHhhHHHHHHHHHHHcCCCcch
Confidence            345778999998422         1245789999999999999999999887753

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.62  E-value=0.006  Score=49.96  Aligned_cols=49  Identities=14%  Similarity=0.199  Sum_probs=40.3

Q ss_pred             HHhHHHHHHHHHHHhc--cccCChhhHH-hhhhhhhhhhhhhcccccchHHH
Q psy607           65 YAMKEDLAEWLNNLYV--ELHMNVANFM-DRLDTGVTLCRGKSTFFKSSIKE  113 (129)
Q Consensus        65 ~aMkEDLaeWI~~Ll~--Ge~i~~DnF~-e~LkdGvlLCkLAN~LqpGSV~~  113 (129)
                      ...+++++.|.++.+.  |..+...||. ..+.||.++|.|++.+.|+.+.+
T Consensus       399 ~~~~~~lL~Wv~~~~~~~~~~~~I~nF~~~s~~DG~a~~~Li~~~~P~~i~~  450 (505)
T d1rt8a_         399 TLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDY  450 (505)
T ss_dssp             CCCHHHHHHHHHHHHTTTCSSCCCSSTTCGGGGGSHHHHHHHHHHCGGGCCG
T ss_pred             hhHHHHHHHHHHHHhhccCCCceeeeCCCCCCcccHHHHHHHHHHCCCCcCH
Confidence            3467899999999873  3356778995 47999999999999999999863

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.08  E-value=0.016  Score=47.62  Aligned_cols=48  Identities=13%  Similarity=0.196  Sum_probs=39.9

Q ss_pred             HHhHHHHHHHHHHHhc--cccCChhhHH-hhhhhhhhhhhhhcccccchHH
Q psy607           65 YAMKEDLAEWLNNLYV--ELHMNVANFM-DRLDTGVTLCRGKSTFFKSSIK  112 (129)
Q Consensus        65 ~aMkEDLaeWI~~Ll~--Ge~i~~DnF~-e~LkdGvlLCkLAN~LqpGSV~  112 (129)
                      ...+++|+.|.+..+.  |..+...||- ..+.||.++|.|++.+.|+.+.
T Consensus       390 ~~~~~~LL~W~~~~~~~~~~~~~I~nF~~~s~~dG~a~~~Li~~~~P~~id  440 (500)
T d1pxya_         390 EMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVN  440 (500)
T ss_dssp             CCCHHHHHHHHHHHHHTTTCCCCCSSTTCGGGGGCHHHHHHHHHHCGGGCC
T ss_pred             hhHHHHHHHHHHHHHHhcCCCCccCcCCCCCccccHHHHHHHHhhCCCccC
Confidence            3567889999998874  3456778996 5899999999999999999875

>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polyhomeotic
species: Drosophila melanogaster [TaxId: 7227]

Probab=81.08  E-value=0.41  Score=28.69  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHhccccCChhhHHhhhhhhhhhhhhh
Q psy607           68 KEDLAEWLNNLYVELHMNVANFMDRLDTGVTLCRGK  103 (129)
Q Consensus        68 kEDLaeWI~~Ll~Ge~i~~DnF~e~LkdGvlLCkLA  103 (129)
                      .+|++.||..+- |..-=.+.|.+.--||.+|+.|-
T Consensus        10 ~~dV~~wL~~~~-~~~~y~~~F~~~~IdG~~Ll~Lt   44 (70)
T d1kw4a_          10 VDDVSNFIRELP-GCQDYVDDFIQQEIDGQALLRLK   44 (70)
T ss_dssp             HHHHHHHHHTST-TCGGGHHHHHHTTCCHHHHHHCC
T ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHcCccHHHHHHcc
Confidence            479999999986 55556788999999999999886