Psyllid ID: psy6081

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MESTQEGSSVKSTPGRQDSKPYSFASLVSLPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccEEccccccccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccccccHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEEEEEEcccccccEEEEcccccccccccEEccEEEcccccEccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHEEEEEEcccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccc
Coil and Loop (DISEMBL)
mestqegssvkstpgrqdskpysfaslvslpqevngqkipfdsskpnpngmefdnlyldmngiihpcthpedkpapkdeDEMMVAIFECIDRLFRIVRPRKLLYMAIdgvaprakmnqpltVYSVLYdrgnystwqLMRSRRFRASKETAEKIAEVARIREKLLadgcilppekekgshfdsncitpgtpfMACLSACLHYYIHdrlnndpgwkgIKVILSDANVP
Flexible Loop (DISEMBL)
mestqegssvkstpgrqdskpYSFASLVSLPQEVNGqkipfdsskpnpNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIdgvaprakmnqpLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP
Low Complexity Region (SEG)
MESTQEGSSVKSTPGRQDSKPYSFASLVSLPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP
Disordered region (IsUnstruct)
****************************************************FDNLYLDMNGIIHPC**************MMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRA***TAEKIAEVARIREKLLADGCILPP*****SHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVIL******
Disordered Region (DISOPRED)
*********************************VNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKM**************************************************************HFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANV*
Disordered Region (DISEMBL)
*******************KPYSFASLVSLPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP
Disordered Region (DISPRO)
*****************DSKPYSFASLVSLPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPE*EKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESTQEGSSVKSTPGRQDSKPYSFASLVSLPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q9VM71	908	5'-3' exoribonuclease 2 h	yes	N/A	0.761	0.189	0.748	1e-79
Q9DBR1	951	5'-3' exoribonuclease 2 O	yes	N/A	0.778	0.185	0.688	8e-71
Q5R4L5	950	5'-3' exoribonuclease 2 O	yes	N/A	0.778	0.185	0.688	8e-71
Q9H0D6	950	5'-3' exoribonuclease 2 O	yes	N/A	0.778	0.185	0.688	8e-71
Q5ZIP4	949	5'-3' exoribonuclease 2 O	yes	N/A	0.774	0.184	0.666	2e-67
Q60SG7	976	5'-3' exoribonuclease 2 h	N/A	N/A	0.769	0.178	0.630	1e-66
Q9U299	975	5'-3' exoribonuclease 2 h	yes	N/A	0.778	0.180	0.615	1e-66
Q9FQ02	1012	5'-3' exoribonuclease 2 O	yes	N/A	0.778	0.173	0.616	8e-54
Q9FQ04	947	5'-3' exoribonuclease 4 O	no	N/A	0.756	0.180	0.586	3e-53
Q5BFH3	1032	5'-3' exoribonuclease 2 O	yes	N/A	0.787	0.172	0.52	6e-52

>sp|Q9VM71|XRN2_DROME 5'-3' exoribonuclease 2 homolog OS=Drosophila melanogaster GN=Rat1 PE=1 SV=2

 Score =  295 bits (756), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 154/191 (80%), Gaps = 19/191 (9%)

Query: 36  GQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFR 95
           G+ I  D + PNPNG+EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFECIDRLF 
Sbjct: 32  GRNIYEDPTLPNPNGIEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFECIDRLFG 91

Query: 96  IVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAE 155
           IVRPRKLLYMAIDGVAPRAKMNQ                    RSRRFRA+KET EK  E
Sbjct: 92  IVRPRKLLYMAIDGVAPRAKMNQ-------------------QRSRRFRAAKETTEKRLE 132

Query: 156 VARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKG 215
           +ARIRE+LL+ GC LPPEKEKG HFDSNCITPGTPFM  LS CLHY++HDR NN+P WKG
Sbjct: 133 IARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRQNNNPAWKG 192

Query: 216 IKVILSDANVP 226
           IKVILSDANVP
Sbjct: 193 IKVILSDANVP 203

Possesses 5'->3' exoribonuclease activity. May promote the termination of transcription by RNA polymerase II.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: -

>sp|Q9DBR1|XRN2_MOUSE 5'-3' exoribonuclease 2 OS=Mus musculus GN=Xrn2 PE=1 SV=1

 Score =  266 bits (680), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 135/196 (68%), Positives = 147/196 (75%), Gaps = 20/196 (10%)

Query: 31  PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
           P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct: 26  PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85

Query: 91  DRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETA 150
           DRLF IVRPR+LLYMAIDGVAPRAKMNQ                    RSRRFRASKE  
Sbjct: 86  DRLFNIVRPRRLLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKEGM 126

Query: 151 EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNND 210
           E   E  R+RE++LA G  LPPE+ K   FDSNCITPGT FM  L+ CL YYI DRLNND
Sbjct: 127 EAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIADRLNND 185

Query: 211 PGWKGIKVILSDANVP 226
           PGWK + VILSDA+ P
Sbjct: 186 PGWKNLTVILSDASAP 201

Possesses 5'->3' exoribonuclease activity. May promote the termination of transcription by RNA polymerase II. During transcription termination, cleavage at the polyadenylation site liberates a 5' fragment which is subsequently processed to form the mature mRNA and a 3' fragment which remains attached to the elongating polymerase. The processive degradation of this 3' fragment by this protein may promote termination of transcription.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q5R4L5|XRN2_PONAB 5'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE=2 SV=1

 Score =  266 bits (680), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 135/196 (68%), Positives = 147/196 (75%), Gaps = 20/196 (10%)

Query: 31  PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
           P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct: 26  PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85

Query: 91  DRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETA 150
           DRLF IVRPR+LLYMAIDGVAPRAKMNQ                    RSRRFRASKE  
Sbjct: 86  DRLFSIVRPRRLLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKEGM 126

Query: 151 EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNND 210
           E   E  R+RE++LA G  LPPE+ K   FDSNCITPGT FM  L+ CL YYI DRLNND
Sbjct: 127 EAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIADRLNND 185

Query: 211 PGWKGIKVILSDANVP 226
           PGWK + VILSDA+ P
Sbjct: 186 PGWKNLTVILSDASAP 201

Possesses 5'->3' exoribonuclease activity. May promote the termination of transcription by RNA polymerase II. During transcription termination, cleavage at the polyadenylation site liberates a 5' fragment which is subsequently processed to form the mature mRNA and a 3' fragment which remains attached to the elongating polymerase. The processive degradation of this 3' fragment by this protein may promote termination of transcription.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q9H0D6|XRN2_HUMAN 5'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE=1 SV=1

 Score =  266 bits (680), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 135/196 (68%), Positives = 147/196 (75%), Gaps = 20/196 (10%)

Query: 31  PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
           P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct: 26  PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85

Query: 91  DRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETA 150
           DRLF IVRPR+LLYMAIDGVAPRAKMNQ                    RSRRFRASKE  
Sbjct: 86  DRLFSIVRPRRLLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKEGM 126

Query: 151 EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNND 210
           E   E  R+RE++LA G  LPPE+ K   FDSNCITPGT FM  L+ CL YYI DRLNND
Sbjct: 127 EAAVEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIADRLNND 185

Query: 211 PGWKGIKVILSDANVP 226
           PGWK + VILSDA+ P
Sbjct: 186 PGWKNLTVILSDASAP 201

Possesses 5'->3' exoribonuclease activity (By similarity). May promote the termination of transcription by RNA polymerase II. During transcription termination, cleavage at the polyadenylation site liberates a 5' fragment which is subsequently processed to form the mature mRNA and a 3' fragment which remains attached to the elongating polymerase. The processive degradation of this 3' fragment by this protein may promote termination of transcription.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q5ZIP4|XRN2_CHICK 5'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 PE=2 SV=1

 Score =  255 bits (652), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 145/195 (74%), Gaps = 20/195 (10%)

Query: 32  QEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECID 91
           +E NG K   D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE ID
Sbjct: 27  KECNGVKASVDTSKPNPNEVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYID 86

Query: 92  RLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAE 151
           R+F IVRPR+LLYMAIDGVAPRAKMNQ                    RSRRFRASKE  E
Sbjct: 87  RIFNIVRPRRLLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKEGME 127

Query: 152 KIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDP 211
              E  +IR+++LA G ILPPE+ K   FDSNCITPGT FM  L+ CL YYI DRLN+DP
Sbjct: 128 AAEEKQKIRQEILAKGGILPPEEVK-ERFDSNCITPGTEFMDNLAKCLRYYIADRLNSDP 186

Query: 212 GWKGIKVILSDANVP 226
           GWK + VILSDA+ P
Sbjct: 187 GWKNLTVILSDASAP 201

Possesses 5'->3' exoribonuclease activity. May promote the termination of transcription by RNA polymerase II.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q60SG7|XRN2_CAEBR 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis briggsae GN=xrn-2 PE=3 SV=2

 Score =  253 bits (645), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/195 (63%), Positives = 145/195 (74%), Gaps = 21/195 (10%)

Query: 34  VNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRL 93
           V+G+++P D ++PNPN  EFDNLYLDMNGIIHPCTHPED+PAPK+EDEM   IFE IDR+
Sbjct: 29  VDGRRVPVDCTQPNPNFQEFDNLYLDMNGIIHPCTHPEDRPAPKNEDEMFALIFEYIDRI 88

Query: 94  FRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKI 153
           F IVRPR+LLYMAIDGVAPRAKMNQ                    RSRRFRASKE AEK 
Sbjct: 89  FSIVRPRRLLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKEMAEKA 129

Query: 154 AEVARIREKLLADGCILPPEK--EKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDP 211
           A +   R +L+A+G  +P +K  E+ +HFDSNCITPGTPFMA L+  L YYIHDR+ NDP
Sbjct: 130 ASIEEQRRRLIAEGIAVPQKKKDEEEAHFDSNCITPGTPFMARLADALRYYIHDRVTNDP 189

Query: 212 GWKGIKVILSDANVP 226
            W  I++ILSDANVP
Sbjct: 190 AWANIEIILSDANVP 204

Possesses 5'->3' exoribonuclease activity. May promote the termination of transcription by RNA polymerase II.

Caenorhabditis briggsae (taxid: 6238)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q9U299|XRN2_CAEEL 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis elegans GN=xrn-2 PE=3 SV=2

 Score =  252 bits (644), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 145/195 (74%), Gaps = 19/195 (9%)

Query: 32  QEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECID 91
           ++ +G ++P D ++PNPN  EFDNLYLDMNGIIHPCTHPED+PAPK+EDEM   IFE ID
Sbjct: 27  RDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGIIHPCTHPEDRPAPKNEDEMFALIFEYID 86

Query: 92  RLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAE 151
           R++ IVRPR+LLYMAIDGVAPRAKMNQ                    RSRRFRASKE AE
Sbjct: 87  RIYSIVRPRRLLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKEMAE 127

Query: 152 KIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDP 211
           K A +   R +L+A+G  +PP+K++ +HFDSNCITPGTPFMA L+  L YYIHDR+ ND 
Sbjct: 128 KEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADALRYYIHDRVTNDA 187

Query: 212 GWKGIKVILSDANVP 226
            W  I++ILSDANVP
Sbjct: 188 SWANIEIILSDANVP 202

Possesses 5'->3' exoribonuclease activity. May promote the termination of transcription by RNA polymerase II.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q9FQ02|XRN2_ARATH 5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1

 Score =  210 bits (534), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 122/198 (61%), Positives = 137/198 (69%), Gaps = 22/198 (11%)

Query: 31  PQEVNGQ--KIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFE 88
           P EVNG    IP DSSKPNPNG E+DNLYLDMNGIIHPC HPEDKP+P    E+   +F+
Sbjct: 26  PLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGIIHPCFHPEDKPSPTTFTEVFQCMFD 85

Query: 89  CIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKE 148
            IDRLF +VRPRKLL+MAIDGVAPRAKMNQ                    R+RRFRA+K+
Sbjct: 86  YIDRLFVMVRPRKLLFMAIDGVAPRAKMNQ-------------------QRARRFRAAKD 126

Query: 149 TAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLN 208
            AE  AE  ++RE+   +G  LPP K     FDSN ITPGT FMA LS  L YYIH RLN
Sbjct: 127 AAEAAAEEEQLREEFEREGKKLPP-KVDSQVFDSNVITPGTEFMATLSFALRYYIHVRLN 185

Query: 209 NDPGWKGIKVILSDANVP 226
           +DPGWK IKVILSDANVP
Sbjct: 186 SDPGWKNIKVILSDANVP 203

Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. Degrades MIRNA-derived loops excised during miRNA maturation in the nucleus.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1

 Score =  208 bits (529), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 112/191 (58%), Positives = 131/191 (68%), Gaps = 20/191 (10%)

Query: 36  GQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFR 95
           G  IP D ++PNPNG EFDNLYLDMNGIIHPC HPE KPAP   D++  ++FE ID LF 
Sbjct: 32  GDLIPVDITRPNPNGFEFDNLYLDMNGIIHPCFHPEGKPAPATYDDVFKSMFEYIDHLFT 91

Query: 96  IVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAE 155
           +VRPRK+LY+AIDGVAPRAKMNQ                    RSRRFRA+K+ AE  AE
Sbjct: 92  LVRPRKILYLAIDGVAPRAKMNQ-------------------QRSRRFRAAKDAAEAEAE 132

Query: 156 VARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKG 215
             R+R+    +G IL   KEK    DSN ITPGTPFMA LS  L YYI  RLN++PGW+ 
Sbjct: 133 EERLRKDFEMEGQIL-SAKEKAETCDSNVITPGTPFMAILSVALQYYIQSRLNHNPGWRY 191

Query: 216 IKVILSDANVP 226
           +KVILSD+NVP
Sbjct: 192 VKVILSDSNVP 202

Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. Degrades miRNA target cleavage products that lack a 5'-cap structure. Antagonizes the negative feedback regulation on EIN3 by promoting EBF1 and EBF2 mRNA decay, which consequently allows the accumulation of EIN3 protein to trigger the ethylene response.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q5BFH3|XRN2_EMENI 5'-3' exoribonuclease 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rat1 PE=3 SV=3

 Score =  203 bits (517), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 104/200 (52%), Positives = 130/200 (65%), Gaps = 22/200 (11%)

Query: 30  LPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFEC 89
           LPQEVNG++IP D + PNPNG E DNLYLDMNGI+HPCTHPE KP P +E EMM+ IF+ 
Sbjct: 25  LPQEVNGEEIPVDITGPNPNGEEMDNLYLDMNGIVHPCTHPEGKPPPANEQEMMIEIFKY 84

Query: 90  IDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKET 149
            DR+  +VRPRKLL +A+DGVAPRAKMNQ                    R+RRFR+++E 
Sbjct: 85  TDRVVNMVRPRKLLMIAVDGVAPRAKMNQ-------------------QRARRFRSAQEA 125

Query: 150 A---EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDR 206
               EK  E  R+  K   D   +  E+     +DSN ITPGTPFM  L+A L Y+I  +
Sbjct: 126 REQDEKKQEFQRMLAKQNGDKEQMLQEEVIQKTWDSNVITPGTPFMDILAASLRYWIAYK 185

Query: 207 LNNDPGWKGIKVILSDANVP 226
           LN DP W+ +K+I+SDA VP
Sbjct: 186 LNTDPAWEKLKIIISDATVP 205

Possesses 5'->3' exoribonuclease activity. Required for the processing of nuclear mRNA and rRNA precursors. May promote termination of transcription by RNA polymerase II.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
328697664	958	PREDICTED: 5'-3' exoribonuclease 2 homol	0.774	0.182	0.768	4e-84
357615796	699	hypothetical protein KGM_03375 [Danaus p	0.783	0.253	0.760	4e-80
194862714	902	GG10442 [Drosophila erecta] gi|190661953	0.761	0.190	0.748	2e-78
383854346	944	PREDICTED: 5'-3' exoribonuclease 2 homol	0.783	0.187	0.739	2e-78
195338777	464	GM16241 [Drosophila sechellia] gi|194129	0.761	0.370	0.759	3e-78
195471641	897	GE14198 [Drosophila yakuba] gi|194174212	0.761	0.191	0.743	5e-78
195438180	924	GK24252 [Drosophila willistoni] gi|19416	0.734	0.179	0.762	5e-78
20129299	908	Rat1, isoform A [Drosophila melanogaster	0.761	0.189	0.748	8e-78
194760286	911	GF15434 [Drosophila ananassae] gi|190616	0.761	0.188	0.738	8e-78
340714666	946	PREDICTED: 5'-3' exoribonuclease 2 homol	0.783	0.187	0.729	1e-77

>gi|328697664|ref|XP_003240404.1| PREDICTED: 5'-3' exoribonuclease 2 homolog [Acyrthosiphon pisum]

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 149/194 (76%), Positives = 162/194 (83%), Gaps = 19/194 (9%)

Query: 33  EVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDR 92
           +VNG++IP DS+ PNPNG+EFDNLYLDMNGIIHPCTHPE+KPAPKDEDEMMVAIFECIDR
Sbjct: 28  DVNGEQIPIDSTSPNPNGIEFDNLYLDMNGIIHPCTHPENKPAPKDEDEMMVAIFECIDR 87

Query: 93  LFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEK 152
           LFRIVRPRK+LYMAIDGVAPRAKMNQ                    RSRRFRASKET EK
Sbjct: 88  LFRIVRPRKVLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKETTEK 128

Query: 153 IAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPG 212
             E+AR+R+ L+  G ILPPEK+KG HFDSNCITPGTPFM  LSACLHYY+HDRLNNDPG
Sbjct: 129 TEELARVRKNLIEAGAILPPEKQKGEHFDSNCITPGTPFMDKLSACLHYYVHDRLNNDPG 188

Query: 213 WKGIKVILSDANVP 226
           WKGIKVILSDANVP
Sbjct: 189 WKGIKVILSDANVP 202

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357615796|gb|EHJ69836.1| hypothetical protein KGM_03375 [Danaus plexippus]

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 149/196 (76%), Positives = 157/196 (80%), Gaps = 19/196 (9%)

Query: 31  PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
           P +V+GQ I  DSS PNPNG+EFDNLYLDMNGIIHPCTHPEDKP PKDEDEMMVAIFECI
Sbjct: 26  PTDVDGQLIYADSSLPNPNGIEFDNLYLDMNGIIHPCTHPEDKPPPKDEDEMMVAIFECI 85

Query: 91  DRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETA 150
           DRLFRIVRPRKLLYMAIDGVAPRAKMNQ                    RSRRFRASKET 
Sbjct: 86  DRLFRIVRPRKLLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKETQ 126

Query: 151 EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNND 210
           EKI E+ARIR +L   G  LPPE+ K +HFDSNCITPGTPFM  LS CLHYYIHDRLNND
Sbjct: 127 EKIDEIARIRNELQVKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYYIHDRLNND 186

Query: 211 PGWKGIKVILSDANVP 226
           PGWKG+KVILSDANVP
Sbjct: 187 PGWKGVKVILSDANVP 202

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194862714|ref|XP_001970086.1| GG10442 [Drosophila erecta] gi|190661953|gb|EDV59145.1| GG10442 [Drosophila erecta]

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 156/191 (81%), Gaps = 19/191 (9%)

Query: 36  GQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFR 95
           G+ I  D++ PNPNG+EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIF+CIDRLF 
Sbjct: 32  GRNIYEDATLPNPNGIEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFDCIDRLFG 91

Query: 96  IVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAE 155
           IVRPRKLLYMAIDGVAPRAKMNQ                    RSRRFRA+KET EK  E
Sbjct: 92  IVRPRKLLYMAIDGVAPRAKMNQ-------------------QRSRRFRAAKETTEKRLE 132

Query: 156 VARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKG 215
           +ARIRE+LL+ GC LPPEKEKG HFDSNCITPGTPFM  LS CLHY++HDRLNN+P WKG
Sbjct: 133 IARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRLNNNPAWKG 192

Query: 216 IKVILSDANVP 226
           IKVILSDANVP
Sbjct: 193 IKVILSDANVP 203

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854346|ref|XP_003702682.1| PREDICTED: 5'-3' exoribonuclease 2 homolog [Megachile rotundata]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 145/196 (73%), Positives = 154/196 (78%), Gaps = 19/196 (9%)

Query: 31  PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
           P   NG ++P +S+ PNPNG+EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMM AIFECI
Sbjct: 26  PITTNGVRVPVNSADPNPNGVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMEAIFECI 85

Query: 91  DRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETA 150
           DRLFRIVRPRKLLYMAIDGVAPRAKMNQ                    RSRRFRASKET 
Sbjct: 86  DRLFRIVRPRKLLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKETN 126

Query: 151 EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNND 210
           EKI E+ RIR +L   G  LPPEK K  HFDSNCITPGTPFMA LS CLHYYIHDRLNND
Sbjct: 127 EKINEIQRIRSELTLKGASLPPEKPKEEHFDSNCITPGTPFMARLSKCLHYYIHDRLNND 186

Query: 211 PGWKGIKVILSDANVP 226
           PGW+ IKVILSDANVP
Sbjct: 187 PGWRNIKVILSDANVP 202

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195338777|ref|XP_002036000.1| GM16241 [Drosophila sechellia] gi|194129880|gb|EDW51923.1| GM16241 [Drosophila sechellia]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 145/191 (75%), Positives = 156/191 (81%), Gaps = 19/191 (9%)

Query: 36  GQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFR 95
           G+ I  D++ PNPNG+EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFECIDRLF 
Sbjct: 32  GRNIYEDATLPNPNGIEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFECIDRLFG 91

Query: 96  IVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAE 155
           IVRPRKLLYMAIDGVAPRAKMNQ                    RSRRFRA+KET EK  E
Sbjct: 92  IVRPRKLLYMAIDGVAPRAKMNQ-------------------QRSRRFRAAKETTEKRLE 132

Query: 156 VARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKG 215
           VARIRE+LL+ GC LPPEKEKG HFDSNCITPGTPFM  LS CLHY++HDRLNN+P WKG
Sbjct: 133 VARIREELLSRGCKLPPEKEKGDHFDSNCITPGTPFMDRLSKCLHYFVHDRLNNNPAWKG 192

Query: 216 IKVILSDANVP 226
           IKVILSDANVP
Sbjct: 193 IKVILSDANVP 203

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195471641|ref|XP_002088111.1| GE14198 [Drosophila yakuba] gi|194174212|gb|EDW87823.1| GE14198 [Drosophila yakuba]

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 142/191 (74%), Positives = 156/191 (81%), Gaps = 19/191 (9%)

Query: 36  GQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFR 95
           G+ I  D++ PNPNG+EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIF+CIDRLF 
Sbjct: 32  GRNIYEDATLPNPNGIEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFDCIDRLFG 91

Query: 96  IVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAE 155
           IVRPRKLLYMAIDGVAPRAKMNQ                    RSRRFRA+KET EK  E
Sbjct: 92  IVRPRKLLYMAIDGVAPRAKMNQ-------------------QRSRRFRAAKETTEKRLE 132

Query: 156 VARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKG 215
           +ARIRE+L++ GC LPPEKEKG HFDSNCITPGTPFM  LS CLHY++HDRLNN+P WKG
Sbjct: 133 IARIREELMSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRLNNNPAWKG 192

Query: 216 IKVILSDANVP 226
           IKVILSDANVP
Sbjct: 193 IKVILSDANVP 203

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195438180|ref|XP_002067015.1| GK24252 [Drosophila willistoni] gi|194163100|gb|EDW78001.1| GK24252 [Drosophila willistoni]

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 141/185 (76%), Positives = 152/185 (82%), Gaps = 19/185 (10%)

Query: 42  DSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRK 101
           DS+ PNPNG+EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFECIDRLF IVRPRK
Sbjct: 38  DSTLPNPNGLEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFECIDRLFGIVRPRK 97

Query: 102 LLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIRE 161
           +LYMAIDGVAPRAKMNQ                    RSRRFRA+KET EK AE+ RIRE
Sbjct: 98  VLYMAIDGVAPRAKMNQ-------------------QRSRRFRAAKETIEKRAEIERIRE 138

Query: 162 KLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILS 221
           +L+  GC LPPEKEKG HFDSNCITPGTPFM  LS CLHYY+HDRLNN+P WKG+KVILS
Sbjct: 139 ELMTKGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYYVHDRLNNNPAWKGVKVILS 198

Query: 222 DANVP 226
           DANVP
Sbjct: 199 DANVP 203

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|20129299|ref|NP_609082.1| Rat1, isoform A [Drosophila melanogaster] gi|442626452|ref|NP_001260166.1| Rat1, isoform B [Drosophila melanogaster] gi|74869864|sp|Q9VM71.2|XRN2_DROME RecName: Full=5'-3' exoribonuclease 2 homolog; AltName: Full=Ribonucleic acid-trafficking protein 1; Short=dRAT1 gi|10728625|gb|AAF52452.2| Rat1, isoform A [Drosophila melanogaster] gi|219990665|gb|ACL68706.1| FI04660p [Drosophila melanogaster] gi|440213467|gb|AGB92702.1| Rat1, isoform B [Drosophila melanogaster]

 Score =  295 bits (756), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 154/191 (80%), Gaps = 19/191 (9%)

Query: 36  GQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFR 95
           G+ I  D + PNPNG+EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFECIDRLF 
Sbjct: 32  GRNIYEDPTLPNPNGIEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFECIDRLFG 91

Query: 96  IVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAE 155
           IVRPRKLLYMAIDGVAPRAKMNQ                    RSRRFRA+KET EK  E
Sbjct: 92  IVRPRKLLYMAIDGVAPRAKMNQ-------------------QRSRRFRAAKETTEKRLE 132

Query: 156 VARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKG 215
           +ARIRE+LL+ GC LPPEKEKG HFDSNCITPGTPFM  LS CLHY++HDR NN+P WKG
Sbjct: 133 IARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRQNNNPAWKG 192

Query: 216 IKVILSDANVP 226
           IKVILSDANVP
Sbjct: 193 IKVILSDANVP 203

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194760286|ref|XP_001962372.1| GF15434 [Drosophila ananassae] gi|190616069|gb|EDV31593.1| GF15434 [Drosophila ananassae]

 Score =  295 bits (755), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 141/191 (73%), Positives = 156/191 (81%), Gaps = 19/191 (9%)

Query: 36  GQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFR 95
           G+ I  D++ PNPNG+EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIF+CIDRLF 
Sbjct: 32  GRNIYEDATLPNPNGVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFDCIDRLFG 91

Query: 96  IVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAE 155
           IVRPRKLLYMAIDGVAPRAKMNQ                    RSRRFRA+KET EK  E
Sbjct: 92  IVRPRKLLYMAIDGVAPRAKMNQ-------------------QRSRRFRAAKETTEKRLE 132

Query: 156 VARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKG 215
           +AR+RE+L++ GC LPPEKEKG HFDSNCITPGTPFM  LS CLHYY+HDRLNN+P WKG
Sbjct: 133 IARLREELMSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYYVHDRLNNNPAWKG 192

Query: 216 IKVILSDANVP 226
           +KVILSDANVP
Sbjct: 193 VKVILSDANVP 203

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714666|ref|XP_003395847.1| PREDICTED: 5'-3' exoribonuclease 2 homolog [Bombus terrestris]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 143/196 (72%), Positives = 154/196 (78%), Gaps = 19/196 (9%)

Query: 31  PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
           P   NG ++P +S  PNPNG+EFDNLYLDMNGIIHPCTHPEDKPAPK+E+EMM AIFECI
Sbjct: 26  PITTNGVRVPVNSVDPNPNGIEFDNLYLDMNGIIHPCTHPEDKPAPKNEEEMMEAIFECI 85

Query: 91  DRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETA 150
           DRLFRIVRPRKLLYMAIDGVAPRAKMNQ                    RSRRFRASKET 
Sbjct: 86  DRLFRIVRPRKLLYMAIDGVAPRAKMNQ-------------------QRSRRFRASKETI 126

Query: 151 EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNND 210
           EK+ E+ RIR +L+  G  LPPEK K  HFDSNCITPGTPFMA LS CLHYYIHDRLNND
Sbjct: 127 EKVNEIKRIRSELILKGVSLPPEKPKEDHFDSNCITPGTPFMARLSKCLHYYIHDRLNND 186

Query: 211 PGWKGIKVILSDANVP 226
           PGW+ IKVILSDANVP
Sbjct: 187 PGWRNIKVILSDANVP 202

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
FB|FBgn0031868	908	Rat1 [Drosophila melanogaster	0.367	0.091	0.879	1.1e-72
UNIPROTKB|F1PB11	948	XRN2 "Uncharacterized protein"	0.389	0.092	0.875	9.9e-66
UNIPROTKB|E2RMS9	950	XRN2 "Uncharacterized protein"	0.389	0.092	0.875	1e-65
UNIPROTKB|F1SAU5	950	XRN2 "Uncharacterized protein"	0.389	0.092	0.875	1e-65
MGI|MGI:894687	951	Xrn2 "5'-3' exoribonuclease 2"	0.389	0.092	0.875	1e-65
RGD|1310218	951	Xrn2 "5'-3' exoribonuclease 2"	0.389	0.092	0.875	1e-65
UNIPROTKB|Q9H0D6	950	XRN2 "5'-3' exoribonuclease 2"	0.389	0.092	0.875	1.3e-65
UNIPROTKB|Q5R4L5	950	XRN2 "5'-3' exoribonuclease 2"	0.389	0.092	0.875	1.3e-65
UNIPROTKB|F1MKX7	951	XRN2 "Uncharacterized protein"	0.389	0.092	0.875	2.7e-65
UNIPROTKB|Q5ZIP4	949	XRN2 "5'-3' exoribonuclease 2"	0.384	0.091	0.839	1.3e-62

FB|FBgn0031868 Rat1 [Drosophila melanogaster (taxid:7227)]

 Score = 391 (142.7 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
 Identities = 73/83 (87%), Positives = 77/83 (92%)

Query:    36 GQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFR 95
             G+ I  D + PNPNG+EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFECIDRLF 
Sbjct:    32 GRNIYEDPTLPNPNGIEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFECIDRLFG 91

Query:    96 IVRPRKLLYMAIDGVAPRAKMNQ 118
             IVRPRKLLYMAIDGVAPRAKMNQ
Sbjct:    92 IVRPRKLLYMAIDGVAPRAKMNQ 114

GO:0004534 "5'-3' exoribonuclease activity" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000738 "DNA catabolic process, exonucleolytic" evidence=ISS

GO:0008409 "5'-3' exonuclease activity" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1PB11 XRN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 416 (151.5 bits), Expect = 9.9e-66, Sum P(2) = 9.9e-66
 Identities = 77/88 (87%), Positives = 82/88 (93%)

Query:    31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
             P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct:    24 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 83

Query:    91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
             DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct:    84 DRLFNIVRPRRLLYMAIDGVAPRAKMNQ 111

GO:0016235 "aggresome" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000738 "DNA catabolic process, exonucleolytic" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RMS9 XRN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 416 (151.5 bits), Expect = 1.0e-65, Sum P(2) = 1.0e-65
 Identities = 77/88 (87%), Positives = 82/88 (93%)

Query:    31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
             P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct:    26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85

Query:    91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
             DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct:    86 DRLFNIVRPRRLLYMAIDGVAPRAKMNQ 113

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1SAU5 XRN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 416 (151.5 bits), Expect = 1.0e-65, Sum P(2) = 1.0e-65
 Identities = 77/88 (87%), Positives = 82/88 (93%)

Query:    31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
             P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct:    26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85

Query:    91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
             DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct:    86 DRLFNIVRPRRLLYMAIDGVAPRAKMNQ 113

GO:0016235 "aggresome" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000738 "DNA catabolic process, exonucleolytic" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:894687 Xrn2 "5'-3' exoribonuclease 2" [Mus musculus (taxid:10090)]

 Score = 416 (151.5 bits), Expect = 1.0e-65, Sum P(2) = 1.0e-65
 Identities = 77/88 (87%), Positives = 82/88 (93%)

Query:    31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
             P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct:    26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85

Query:    91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
             DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct:    86 DRLFNIVRPRRLLYMAIDGVAPRAKMNQ 113

GO:0000738 "DNA catabolic process, exonucleolytic" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0004534 "5'-3' exoribonuclease activity" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IC

GO:0005730 "nucleolus" evidence=ISO

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0006281 "DNA repair" evidence=NAS

GO:0006310 "DNA recombination" evidence=NAS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006353 "DNA-dependent transcription, termination" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0007017 "microtubule-based process" evidence=TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008409 "5'-3' exonuclease activity" evidence=ISO

GO:0016049 "cell growth" evidence=IGI

GO:0016070 "RNA metabolic process" evidence=IGI

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1310218 Xrn2 "5'-3' exoribonuclease 2" [Rattus norvegicus (taxid:10116)]

 Score = 416 (151.5 bits), Expect = 1.0e-65, Sum P(2) = 1.0e-65
 Identities = 77/88 (87%), Positives = 82/88 (93%)

Query:    31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
             P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct:    26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85

Query:    91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
             DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct:    86 DRLFNIVRPRRLLYMAIDGVAPRAKMNQ 113

GO:0000738 "DNA catabolic process, exonucleolytic" evidence=IEA;ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0007283 "spermatogenesis" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008409 "5'-3' exonuclease activity" evidence=ISO

GO:0016049 "cell growth" evidence=IEA;ISO

GO:0016070 "RNA metabolic process" evidence=IEA;ISO

GO:0016235 "aggresome" evidence=IEA;ISO

UNIPROTKB|Q9H0D6 XRN2 "5'-3' exoribonuclease 2" [Homo sapiens (taxid:9606)]

 Score = 415 (151.1 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
 Identities = 77/88 (87%), Positives = 82/88 (93%)

Query:    31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
             P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct:    26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85

Query:    91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
             DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct:    86 DRLFSIVRPRRLLYMAIDGVAPRAKMNQ 113

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006353 "DNA-dependent transcription, termination" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0008409 "5'-3' exonuclease activity" evidence=IDA

GO:0000738 "DNA catabolic process, exonucleolytic" evidence=IDA

GO:0016070 "RNA metabolic process" evidence=ISS

GO:0016049 "cell growth" evidence=ISS

GO:0004534 "5'-3' exoribonuclease activity" evidence=TAS

GO:0007283 "spermatogenesis" evidence=IEP

GO:0004518 "nuclease activity" evidence=TAS

GO:0006396 "RNA processing" evidence=TAS

GO:0006401 "RNA catabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0016235 "aggresome" evidence=IDA

UNIPROTKB|Q5R4L5 XRN2 "5'-3' exoribonuclease 2" [Pongo abelii (taxid:9601)]

 Score = 415 (151.1 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
 Identities = 77/88 (87%), Positives = 82/88 (93%)

Query:    31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
             P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct:    26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85

Query:    91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
             DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct:    86 DRLFSIVRPRRLLYMAIDGVAPRAKMNQ 113

GO:0000738 "DNA catabolic process, exonucleolytic" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0008409 "5'-3' exonuclease activity" evidence=ISS

UNIPROTKB|F1MKX7 XRN2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 416 (151.5 bits), Expect = 2.7e-65, Sum P(2) = 2.7e-65
 Identities = 77/88 (87%), Positives = 82/88 (93%)

Query:    31 PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
             P+E NG KIP D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE I
Sbjct:    26 PKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYI 85

Query:    91 DRLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
             DRLF IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct:    86 DRLFNIVRPRRLLYMAIDGVAPRAKMNQ 113

GO:0016235 "aggresome" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000738 "DNA catabolic process, exonucleolytic" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q5ZIP4 XRN2 "5'-3' exoribonuclease 2" [Gallus gallus (taxid:9031)]

 Score = 393 (143.4 bits), Expect = 1.3e-62, Sum P(2) = 1.3e-62
 Identities = 73/87 (83%), Positives = 79/87 (90%)

Query:    32 QEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECID 91
             +E NG K   D+SKPNPN +EFDNLYLDMNGIIHPCTHPEDKPAPK+EDEMMVAIFE ID
Sbjct:    27 KECNGVKASVDTSKPNPNEVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYID 86

Query:    92 RLFRIVRPRKLLYMAIDGVAPRAKMNQ 118
             R+F IVRPR+LLYMAIDGVAPRAKMNQ
Sbjct:    87 RIFNIVRPRRLLYMAIDGVAPRAKMNQ 113

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006353 "DNA-dependent transcription, termination" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0016235 "aggresome" evidence=IEA

GO:0000738 "DNA catabolic process, exonucleolytic" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0008409 "5'-3' exonuclease activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R4L5	XRN2_PONAB	3, ., 1, ., 1, 3, ., -	0.6887	0.7787	0.1852	yes	N/A
Q9FQ02	XRN2_ARATH	3, ., 1, ., 1, 3, ., -	0.6161	0.7787	0.1739	yes	N/A
Q5BFH3	XRN2_EMENI	3, ., 1, ., 1, 3, ., -	0.52	0.7876	0.1724	yes	N/A
Q9DBR1	XRN2_MOUSE	3, ., 1, ., 1, 3, ., -	0.6887	0.7787	0.1850	yes	N/A
Q8TFZ1	XRN2_ASPFU	3, ., 1, ., 1, 3, ., -	0.5198	0.7831	0.1672	yes	N/A
P0CL88	XRN2_CRYNJ	3, ., 1, ., 1, 3, ., -	0.5080	0.7433	0.1490	yes	N/A
Q5ZIP4	XRN2_CHICK	3, ., 1, ., 1, 3, ., -	0.6666	0.7743	0.1844	yes	N/A
Q9H0D6	XRN2_HUMAN	3, ., 1, ., 1, 3, ., -	0.6887	0.7787	0.1852	yes	N/A
Q2UCP5	XRN2_ASPOR	3, ., 1, ., 1, 3, ., -	0.5050	0.7831	0.1710	yes	N/A
P40848	XRN2_SCHPO	3, ., 1, ., 1, 3, ., -	0.5364	0.7654	0.1745	yes	N/A
Q9VM71	XRN2_DROME	3, ., 1, ., 1, 3, ., -	0.7486	0.7610	0.1894	yes	N/A
Q9U299	XRN2_CAEEL	3, ., 1, ., 1, 3, ., -	0.6153	0.7787	0.1805	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.13	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	226
pfam03159	237	pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus	2e-95
COG5049	953	COG5049, XRN1, 5'-3' exonuclease [DNA replication,	1e-64

>gnl|CDD|202558 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus

 Score =  278 bits (712), Expect = 2e-95
 Identities = 112/180 (62%), Positives = 124/180 (68%), Gaps = 20/180 (11%)

Query: 47  NPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMA 106
           +    EFDNLYLDMNGIIHPC+HPEDKP P+ EDEM VAIFE IDRLF IVRPRKLLYMA
Sbjct: 24  HQIPDEFDNLYLDMNGIIHPCSHPEDKPFPETEDEMFVAIFEYIDRLFNIVRPRKLLYMA 83

Query: 107 IDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLAD 166
           IDGVAPRAKMNQ                    RSRRFRA+K+  EK AE    RE+L  +
Sbjct: 84  IDGVAPRAKMNQ-------------------QRSRRFRAAKDAKEKEAEAEENREELETE 124

Query: 167 GCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP 226
           G  LP + EK   FDSNCITPGTPFMA L+  L YYI  +LN DP W+ + VILSDA VP
Sbjct: 125 GIKLPEKVEK-EKFDSNCITPGTPFMARLAKALRYYIKKKLNTDPEWQNLTVILSDAEVP 183

This family aligns residues towards the N-terminus of several proteins with multiple functions. The members of this family all appear to possess 5'-3' exonuclease activity EC:3.1.11.-. Thus, the aligned region may be necessary for 5' to 3' exonuclease function. The family also contains several Xrn1 and Xrn2 proteins. The 5'-3' exoribonucleases Xrn1p and Xrn2p/Rat1p function in the degradation and processing of several classes of RNA in Saccharomyces cerevisiae. Xrn1p is the main enzyme catalyzing cytoplasmic mRNA degradation in multiple decay pathways, whereas Xrn2p/Rat1p functions in the processing of rRNAs and small nucleolar RNAs (snoRNAs) in the nucleus. Length = 237

>gnl|CDD|227382 COG5049, XRN1, 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation]

 Score =  215 bits (548), Expect = 1e-64
 Identities = 87/186 (46%), Positives = 109/186 (58%), Gaps = 26/186 (13%)

Query: 45  KPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLY 104
           K  P    FDNLYLDMNGI+H CTHP D   P+ E+EM  A+FE ID +   +RPRKLLY
Sbjct: 24  KQIPE---FDNLYLDMNGILHNCTHPNDGSPPETEEEMYKAVFEYIDHILLKIRPRKLLY 80

Query: 105 MAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKE--TAEKIAEVAR--IR 160
           MA+DGVAPRAKMNQ                    R+RRFR++K+   A   AE     I 
Sbjct: 81  MAVDGVAPRAKMNQ-------------------QRARRFRSAKDASAAALKAEPNGEEIP 121

Query: 161 EKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVIL 220
           E+    G  +     +   FDSNCITPGTPFM  L+  L YYIH +L++DP W+ +++I 
Sbjct: 122 EEKDEIGNEIDTIDVEKKKFDSNCITPGTPFMERLAKVLRYYIHCKLSSDPEWRNLRIIF 181

Query: 221 SDANVP 226
           S   VP
Sbjct: 182 SGHLVP 187

Length = 953

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
KOG2044|consensus	931		100.0
COG5049	953	XRN1 5'-3' exonuclease [DNA replication, recombina	100.0
PF03159	237	XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro:	100.0
KOG2045|consensus	1493		100.0
PF00752	101	XPG_N: XPG N-terminal domain; InterPro: IPR006085	86.0

>KOG2044|consensus

Probab=100.00  E-value=5.6e-82  Score=622.43  Aligned_cols=190  Identities=72%  Similarity=1.190  Sum_probs=186.1

Q ss_pred             CCCCCccccccccc-ccccCCccccCCCCCCCCCCCccCeEEEecccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy6081          17 QDSKPYSFASLVSL-PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFR   95 (226)
Q Consensus        17 ~~~~p~~~~~~~~~-p~~~~g~~~p~d~~~pn~n~~~~DnLYLDmNgIIH~c~h~~~~~~~~~e~e~~~~If~yID~Lv~   95 (226)
                      +.+||.+|++++|+ |.+++|+.||+|.|+|||||.||||||||||||||||+||+++|+|+||||||+.||+||||||.
T Consensus        11 s~kyp~~I~~viEe~p~~~~g~~ip~D~s~pNPNg~E~DNLYLDMNGIIHPC~HPEdkPaP~tedEm~~avFeyiDrlf~   90 (931)
T KOG2044|consen   11 SRKYPKTISPVIEEEPVDVDGVKIPVDYSKPNPNGVEFDNLYLDMNGIIHPCTHPEDKPAPETEDEMFVAVFEYIDRLFS   90 (931)
T ss_pred             HHhcchhhhhhhhcCcccCCCcccccccCCCCCCcccccceeeecCcccccCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            57899999999995 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccceEEEEEeCCCCccccccccccccccccCCCchhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Q psy6081          96 IVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKE  175 (226)
Q Consensus        96 iVrPrKllylAiDGVAPrAKmnQQ~~~~~~~~~~~~~~~~~~~RsRRfrsake~~e~~~~~~~~~~~l~~~g~~lp~~~~  175 (226)
                      +|||||||||||||||||||||||                   |+||||||||++|+.+|++++++++.++|..||++ .
T Consensus        91 mvRPRkLLymAIDGVAPRAKMNQQ-------------------RsRRFRaaKeaae~~~e~e~~ree~~~~G~~lpp~-~  150 (931)
T KOG2044|consen   91 MVRPRKLLYMAIDGVAPRAKMNQQ-------------------RSRRFRAAKEAAEKEAEIERLREEFEAEGKFLPPK-V  150 (931)
T ss_pred             hccchheeEEeecccCchhhhhHH-------------------HHHHHhhhhHHHHHHHHHHHHHHHHHhcCCcCCch-h
Confidence            999999999999999999999999                   99999999999999999999999999999999986 6


Q ss_pred             cCCCCCCCccCCCChhHHHHHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCC
Q psy6081         176 KGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP  226 (226)
Q Consensus       176 ~~~~fDsN~ITPGT~FM~~L~~~L~~yI~~kl~~dp~W~~i~VI~Sds~VP  226 (226)
                      +.++||||||||||+||++|+.+|+|||+.|||+||+|+||+||+|||+||
T Consensus       151 ~~e~fDSNcITPGTpFM~~La~aLrYyI~~rLn~DPgWkNikvIlSDAnVP  201 (931)
T KOG2044|consen  151 KKETFDSNCITPGTPFMDRLAKALRYYIHDRLNSDPGWKNIKVILSDANVP  201 (931)
T ss_pred             hccccccCccCCCChHHHHHHHHHHHHHHHhhcCCccccceEEEEecCCCC
Confidence            678999999999999999999999999999999999999999999999999

>COG5049 XRN1 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation]

Probab=100.00  E-value=7.9e-62  Score=476.48  Aligned_cols=173  Identities=49%  Similarity=0.865  Sum_probs=145.6

Q ss_pred             CCCCCcccccccccccccCCccccCCCCCCCCCCCccCeEEEecccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy6081          17 QDSKPYSFASLVSLPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRI   96 (226)
Q Consensus        17 ~~~~p~~~~~~~~~p~~~~g~~~p~d~~~pn~n~~~~DnLYLDmNgIIH~c~h~~~~~~~~~e~e~~~~If~yID~Lv~i   96 (226)
                      +.|||.++..+.|.+       +|           +|||||||||||+|+|+||++.+.|.+|+|||..||+|||+|+.+
T Consensus        11 S~r~p~ii~~I~e~~-------~P-----------~~DNLYLDMNgIlH~CtHp~d~~~petEeEm~~aVf~Yidhil~~   72 (953)
T COG5049          11 SERYPKIIQLIEEKQ-------IP-----------EFDNLYLDMNGILHNCTHPNDGSPPETEEEMYKAVFEYIDHILLK   72 (953)
T ss_pred             HhhhhHhhhhhhccC-------CC-----------CcceeEEecccccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            467888877775552       33           669999999999999999999999999999999999999999999


Q ss_pred             hcccceEEEEEeCCCCccccccccccccccccCCCchhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHH----hcCCCCCC
Q psy6081          97 VRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLL----ADGCILPP  172 (226)
Q Consensus        97 VrPrKllylAiDGVAPrAKmnQQ~~~~~~~~~~~~~~~~~~~RsRRfrsake~~e~~~~~~~~~~~l~----~~g~~lp~  172 (226)
                      +||||||||||||||||||||||                   |+||||+|+++..++.+.+...+++.    ..|..+..
T Consensus        73 irPrKllymAVDGvAPRAKMNQQ-------------------RaRRFRsAkda~~A~~Kae~~~e~~~e~~~e~g~~id~  133 (953)
T COG5049          73 IRPRKLLYMAVDGVAPRAKMNQQ-------------------RARRFRSAKDASAAALKAEPNGEEIPEEKDEIGNEIDT  133 (953)
T ss_pred             cCcceEEEEEecccCchhhhhHH-------------------HHHhhhhhhhhHHHHhhccccccccchhccccCCccch
Confidence            99999999999999999999999                   99999999985433222221222222    22333333


Q ss_pred             CcccCCCCCCCccCCCChhHHHHHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCC
Q psy6081         173 EKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP  226 (226)
Q Consensus       173 ~~~~~~~fDsN~ITPGT~FM~~L~~~L~~yI~~kl~~dp~W~~i~VI~Sds~VP  226 (226)
                      ...+.+.||||||||||+||++|+..|+|||+.||++||.|+|++|||||+.||
T Consensus       134 ~~~~kk~fDSNcITPGTpFMerLak~L~Y~i~~KlssDp~Wrnl~iI~S~~~vP  187 (953)
T COG5049         134 IDVEKKKFDSNCITPGTPFMERLAKVLRYYIHCKLSSDPEWRNLRIIFSGHLVP  187 (953)
T ss_pred             hhhhhccccccCCCCCChHHHHHHHHHHHHHHhhhcCCccceeEEEEEecCcCC
Confidence            334567899999999999999999999999999999999999999999999998

>PF03159 XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: IPR004859 Signatures of this entry align residues towards the N terminus of several proteins with multiple functions

Probab=100.00  E-value=4.1e-58  Score=404.60  Aligned_cols=155  Identities=61%  Similarity=1.063  Sum_probs=124.7

Q ss_pred             ccCeEEEecccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcccceEEEEEeCCCCccccccccccccccccCCC
Q psy6081          52 EFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGN  131 (226)
Q Consensus        52 ~~DnLYLDmNgIIH~c~h~~~~~~~~~e~e~~~~If~yID~Lv~iVrPrKllylAiDGVAPrAKmnQQ~~~~~~~~~~~~  131 (226)
                      +|||||||||||||+|+|++..+.+.+++++|++||+|||+||++|||||+||||||||||+||||||            
T Consensus        29 ~~D~LYiDmN~IIH~~~~~~~~~~~~~~~~~~~~i~~~id~l~~~v~P~k~l~iavDGvaP~AKm~qQ------------   96 (237)
T PF03159_consen   29 EFDNLYIDMNGIIHNCIHPNDSSIPKTEEEIFQRIFNYIDRLVRIVRPRKLLYIAVDGVAPRAKMNQQ------------   96 (237)
T ss_dssp             -ESEEEEETHHHHHHHHS-SSS----SHHHHHHHHHHHHHHHHHHH-ESSEEEEE---S--HHHHHHH------------
T ss_pred             cCCEEEEEcchhhhHhcCCcccCCCccHHHHHHHHHHHHHHhheeecCceEEEEEcCCCCCchHHHHH------------
Confidence            79999999999999999999888889999999999999999999999999999999999999999999            


Q ss_pred             chhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCCCccCCCChhHHHHHHHHHHHHHHHhcCCC
Q psy6081         132 YSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDP  211 (226)
Q Consensus       132 ~~~~~~~RsRRfrsake~~e~~~~~~~~~~~l~~~g~~lp~~~~~~~~fDsN~ITPGT~FM~~L~~~L~~yI~~kl~~dp  211 (226)
                             |+|||+++++..+...+.....++...+|...+.. .....||+|+|||||+||.+|+.+|++||++|+++||
T Consensus        97 -------R~RRf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fdsn~ITPGT~FM~~l~~~L~~~~~~k~~~~~  168 (237)
T PF03159_consen   97 -------RSRRFKSAKESEENNKEESEIKEEIDEEGEQLPPE-DQEEKFDSNCITPGTEFMEKLSDALRYYIKKKLNSDP  168 (237)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--B-HH-HHS----GGGSSTTSHHHHHHHHHHHHHHHHHHHH-G
T ss_pred             -------HHHHHHHhhcchhHHHHHHHHhhhhhhcccccccc-ccccccccceeccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence                   99999999999887777667777777777655432 3458899999999999999999999999999999999


Q ss_pred             CCCCcEEEEcCCCCC
Q psy6081         212 GWKGIKVILSDANVP  226 (226)
Q Consensus       212 ~W~~i~VI~Sds~VP  226 (226)
                      .|++++||+||++||
T Consensus       169 ~~~~~~vi~S~~~vp  183 (237)
T PF03159_consen  169 KWQNLKVIFSGSDVP  183 (237)
T ss_dssp             GGCCSEEEEE-TTSS
T ss_pred             CcCceEEEEeCCCCC
Confidence            999999999999998

The members of this family all appear to possess 5'-3' exonuclease activity 3.1.11 from EC. Thus, the aligned region may be necessary for 5'-3' exonuclease function.; GO: 0003676 nucleic acid binding, 0004527 exonuclease activity, 0005622 intracellular; PDB: 2Y35_A 3PIE_B 3PIF_C 3FQD_A.

>KOG2045|consensus

Probab=100.00  E-value=2.6e-56  Score=445.75  Aligned_cols=152  Identities=51%  Similarity=0.939  Sum_probs=136.9

Q ss_pred             ccCCccccCCCCCCCCCCCccCeEEEecccccccccCCCCC--CCCCCHHHHHHHHHHHHHHHHhhhcccceEEEEEeCC
Q psy6081          33 EVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDK--PAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGV  110 (226)
Q Consensus        33 ~~~g~~~p~d~~~pn~n~~~~DnLYLDmNgIIH~c~h~~~~--~~~~~e~e~~~~If~yID~Lv~iVrPrKllylAiDGV  110 (226)
                      .+.+..||           ||||||||||||||+|+|+++.  ..+.+|+|||.+||.|||+||.+++|+|++|||||||
T Consensus        20 liee~qIP-----------EFDNLYLDMNgIlHNCsH~nDddvt~rLtEeEif~~IfnYIdhLf~~IkPqKlffMAVDGv   88 (1493)
T KOG2045|consen   20 LIEEHQIP-----------EFDNLYLDMNGILHNCSHPNDDDVTFRLTEEEIFQEIFNYIDHLFYLIKPQKLFFMAVDGV   88 (1493)
T ss_pred             HhhhccCC-----------cccceeeecccccccCCCCCCCccCcCCCHHHHHHHHHHHHHHHHHhhCcceEEEEeeccc
Confidence            34566677           9999999999999999999874  4578999999999999999999999999999999999


Q ss_pred             CCccccccccccccccccCCCchhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCCCccCCCCh
Q psy6081         111 APRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTP  190 (226)
Q Consensus       111 APrAKmnQQ~~~~~~~~~~~~~~~~~~~RsRRfrsake~~e~~~~~~~~~~~l~~~g~~lp~~~~~~~~fDsN~ITPGT~  190 (226)
                      |||||||||                   |+||||+|+++....+       +....|+..|.     +.||||||||||+
T Consensus        89 APRAKMNQQ-------------------RsRRFrTArdAe~qla-------KA~enGe~~p~-----erFDSNcITPGTe  137 (1493)
T KOG2045|consen   89 APRAKMNQQ-------------------RSRRFRTARDAEQQLA-------KAAENGELRPH-----ERFDSNCITPGTE  137 (1493)
T ss_pred             CchhhhhHH-------------------HHHhhhhhhhHHHHHH-------HHHhccccCcc-----cccccCCCCCcHH
Confidence            999999999                   9999999998754322       23445777654     6799999999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCC
Q psy6081         191 FMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP  226 (226)
Q Consensus       191 FM~~L~~~L~~yI~~kl~~dp~W~~i~VI~Sds~VP  226 (226)
                      ||.+|++.|+|||++|+.+|+.|++++|||||++||
T Consensus       138 FM~rl~~~L~yfIktKistDs~Wq~~~vIlSGhevP  173 (1493)
T KOG2045|consen  138 FMVRLQEGLRYFIKTKISTDSLWQRCTVILSGHEVP  173 (1493)
T ss_pred             HHHHHHHHHHHHHHhccccchhhcccEEEEeCCcCC
Confidence            999999999999999999999999999999999998

>PF00752 XPG_N: XPG N-terminal domain; InterPro: IPR006085 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer

Probab=86.00  E-value=0.46  Score=35.95  Aligned_cols=61  Identities=18%  Similarity=0.292  Sum_probs=38.3

Q ss_pred             eEEEecccccccccCCCCCCCC--CCHHHHHHHHHHHHHHHH-hhhcccceEEEEEeCCCCccccccc
Q psy6081          55 NLYLDMNGIIHPCTHPEDKPAP--KDEDEMMVAIFECIDRLF-RIVRPRKLLYMAIDGVAPRAKMNQP  119 (226)
Q Consensus        55 nLYLDmNgIIH~c~h~~~~~~~--~~e~e~~~~If~yID~Lv-~iVrPrKllylAiDGVAPrAKmnQQ  119 (226)
                      -|=||.+..||.+.+.......  ...+..+..++..+..|. .-|.|    ++.+||.+|-.|....
T Consensus        28 ~vaID~s~wl~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~gI~P----ifVFDG~~~~~K~~~~   91 (101)
T PF00752_consen   28 RVAIDASCWLHQFLFSCREELGQGVGTDSHLRGLFSRLCRLLEHGIKP----IFVFDGKPPPLKRETI   91 (101)
T ss_dssp             EEEEEHHHHHHHHHHHSBCTTSCB-BS-HHHHHHHHHHHHHHHTTEEE----EEEE--STTGGCHHHH
T ss_pred             EEEEEcHHHHHHHHHHhHHHhccccchHHHHHHHHHHHHHHHHCCCEE----EEEECCCCchhhHHHH
Confidence            4678999999986543321111  111456677777777764 34544    6889999999998887

People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair [, ]. XP-G can be corrected by a 133 Kd nuclear protein, XPGC []. XPGC is an acidic protein that confers normal UV resistance in expressing cells []. It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms [, ]. XPGC cleaves one strand of the duplex at the border with the single-stranded region []. XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases [, ]; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents the N-terminal of XPG.; GO: 0004518 nuclease activity, 0006281 DNA repair; PDB: 1A77_A 1A76_A 1MC8_B 3QEB_Z 3QEA_Z 3QE9_Y 1UL1_Z 3Q8K_A 3Q8M_A 3Q8L_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
3fqd_A	899	Crystal Structure Of The S. Pombe Rat1-Rai1 Complex		3e-45
3pie_A	1155	Crystal Structure Of The 5'->3' Exoribonuclease Xrn		3e-35
2y35_A	1140	Crystal Structure Of Xrn1-Substrate Complex Length		1e-30

>pdb|3FQD|A Chain A, Crystal Structure Of The S. Pombe Rat1-Rai1 Complex Length = 899

Iteration: 1
 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 98/192 (51%), Positives = 124/192 (64%), Gaps = 19/192 (9%)
Query: 35  NGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLF 94
           +G +I  D S PNPNG+E DNLYLD NGI+HPC+HPED+PAP+ EDE  VA+FE  DR+ 
Sbjct: 34  DGTEIEPDLSLPNPNGVECDNLYLDXNGIVHPCSHPEDRPAPETEDEXXVAVFEYTDRIL 93
Query: 95  RIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIA 154
             VRPR+LL++AIDGVAPRAK NQ                    RSRRFR+S+E A K  
Sbjct: 94  AXVRPRQLLFIAIDGVAPRAKXNQ-------------------QRSRRFRSSREAALKEE 134
Query: 155 EVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWK 214
           E+    E+    G  +     K   +DSNCITPGTPF   L+  L YYI ++LN+DP W+
Sbjct: 135 ELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFXDTLAKSLRYYIINKLNSDPCWR 194
Query: 215 GIKVILSDANVP 226
            ++ ILSDA+VP
Sbjct: 195 NVRFILSDASVP 206

>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1, E178q Mutant Length = 1155

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/199 (40%), Positives = 107/199 (53%), Gaps = 43/199 (21%)
Query: 30  LPQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIF 87
           + Q ++G +IP           EFDNLYLDMN I+H CTH +         E+E+   IF
Sbjct: 17  ISQLIDGSQIP-----------EFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEVYSKIF 65
Query: 88  ECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASK 147
             ID LF  ++P++  YMAIDGVAPRAKMNQ                    R+RRFR + 
Sbjct: 66  SYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQ-------------------QRARRFRTAM 106
Query: 148 ETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRL 207
           +  + +       +K + +G  LP    KG  FDSN ITPGT FMA L+  L Y+IHD++
Sbjct: 107 DAEKAL-------QKAIENGDELP----KGEPFDSNAITPGTEFMAKLTENLKYFIHDKI 155
Query: 208 NNDPGWKGIKVILSDANVP 226
            ND  W+ +KVI S   VP
Sbjct: 156 TNDTRWQNVKVIFSGHEVP 174

>pdb|2Y35|A Chain A, Crystal Structure Of Xrn1-Substrate Complex Length = 1140

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 99/177 (55%), Gaps = 33/177 (18%)
Query: 52  EFDNLYLDMNGIIHPCTHPEDKPAP--KDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
           EFDNLYLDMNGI+H C+HP+D       +E+++   IF  +D+LF +++P++L ++++DG
Sbjct: 28  EFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDG 87
Query: 110 VAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCI 169
           VAPRAKMNQ                    RSRRFR ++E  ++ A+ A+           
Sbjct: 88  VAPRAKMNQ-------------------QRSRRFRTAREAEQQEAKAAQ----------- 117
Query: 170 LPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP 226
              E  +   FDSNCITPGT FM  L   L  ++  +++ DP W+   VILS    P
Sbjct: 118 -RGELREHERFDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAP 173

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
3fqd_A	899	Protein DHP1, 5'-3' exoribonuclease 2; protein-pro	4e-52
3pie_A	1155	5'->3' exoribonuclease (XRN1); beta berrel, tudor	3e-43
2y35_A	1140	LD22664P; hydrolase-DNA complex, RNA degradation,	5e-41

>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} Length = 899

 Score =  179 bits (454), Expect = 4e-52
 Identities = 103/196 (52%), Positives = 131/196 (66%), Gaps = 19/196 (9%)

Query: 31  PQEVNGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECI 90
            +  +G +I  D S PNPNG+E DNLYLDMNGI+HPC+HPED+PAP+ EDEMMVA+FE  
Sbjct: 30  EKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRPAPETEDEMMVAVFEYT 89

Query: 91  DRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETA 150
           DR+  +VRPR+LL++AIDGVAPRAKMNQ                    RSRRFR+S+E A
Sbjct: 90  DRILAMVRPRQLLFIAIDGVAPRAKMNQ-------------------QRSRRFRSSREAA 130

Query: 151 EKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNND 210
            K  E+    E+    G  +     K   +DSNCITPGTPFM  L+  L YYI ++LN+D
Sbjct: 131 LKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYIINKLNSD 190

Query: 211 PGWKGIKVILSDANVP 226
           P W+ ++ ILSDA+VP
Sbjct: 191 PCWRNVRFILSDASVP 206

>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A Length = 1155

 Score =  153 bits (388), Expect = 3e-43
 Identities = 74/177 (41%), Positives = 95/177 (53%), Gaps = 32/177 (18%)

Query: 52  EFDNLYLDMNGIIHPCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
           EFDNLYLDMN I+H CTH +         E+E+   IF  ID LF  ++P++  YMAIDG
Sbjct: 28  EFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEVYSKIFSYIDHLFHTIKPKQTFYMAIDG 87

Query: 110 VAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCI 169
           VAPRAKMNQ                    R+RRFR + +  + + +     +        
Sbjct: 88  VAPRAKMNQ-------------------QRARRFRTAMDAEKALQKAIENGD-------- 120

Query: 170 LPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP 226
              E  KG  FDSN ITPGT FMA L+  L Y+IHD++ ND  W+ +KVI S   VP
Sbjct: 121 ---ELPKGEPFDSNAITPGTEFMAKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVP 174

>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster} Length = 1140

 Score =  148 bits (373), Expect = 5e-41
 Identities = 68/177 (38%), Positives = 99/177 (55%), Gaps = 33/177 (18%)

Query: 52  EFDNLYLDMNGIIHPCTHPEDK--PAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDG 109
           EFDNLYLDMNGI+H C+HP+D       +E+++   IF  +D+LF +++P++L ++++DG
Sbjct: 28  EFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDG 87

Query: 110 VAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCI 169
           VAPRAKMNQ                    RSRRFR ++E  ++ A+ A+  E        
Sbjct: 88  VAPRAKMNQ-------------------QRSRRFRTAREAEQQEAKAAQRGEL------- 121

Query: 170 LPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP 226
                 +   FDSNCITPGT FM  L   L  ++  +++ DP W+   VILS    P
Sbjct: 122 -----REHERFDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAP 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
3fqd_A	899	Protein DHP1, 5'-3' exoribonuclease 2; protein-pro	100.0
3pie_A	1155	5'->3' exoribonuclease (XRN1); beta berrel, tudor	100.0
2y35_A	1140	LD22664P; hydrolase-DNA complex, RNA degradation,	100.0
1b43_A	340	Protein (FEN-1); nuclease, DNA repair, DNA replica	85.69

>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-68  Score=532.73  Aligned_cols=191  Identities=54%  Similarity=0.936  Sum_probs=178.1

Q ss_pred             CCCCCccccccccc-cccc-CCccccCCCCCCCCCCCccCeEEEecccccccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy6081          17 QDSKPYSFASLVSL-PQEV-NGQKIPFDSSKPNPNGMEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLF   94 (226)
Q Consensus        17 ~~~~p~~~~~~~~~-p~~~-~g~~~p~d~~~pn~n~~~~DnLYLDmNgIIH~c~h~~~~~~~~~e~e~~~~If~yID~Lv   94 (226)
                      ++|||+++++++|+ |+++ +|..+|+|.++|||||.+|||||||||||||+|+|+++.+.+.||++||.+||+|||+||
T Consensus        14 s~rYP~i~~~~~e~~~~~~~~g~~~p~d~~~pnpng~e~DnLYlDmNgIIH~c~h~~~~~~~~te~e~~~~If~yid~l~   93 (899)
T 3fqd_A           14 SRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRPAPETEDEMMVAVFEYTDRIL   93 (899)
T ss_dssp             HHHCGGGEEECCCCCCEECTTSCEECCCTTSCCTTSSCEEEEEEETHHHHHHHHSCSSSCCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHCCccchhhcccccccccCCccccccccCCCCCCcccceEEEecchhhhhhcCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            46999999999996 7777 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccceEEEEEeCCCCccccccccccccccccCCCchhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q psy6081          95 RIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDRGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPEK  174 (226)
Q Consensus        95 ~iVrPrKllylAiDGVAPrAKmnQQ~~~~~~~~~~~~~~~~~~~RsRRfrsake~~e~~~~~~~~~~~l~~~g~~lp~~~  174 (226)
                      .+|||||+|||||||||||||||||                   |+||||++++++++.++.+++++++.++|...+.+.
T Consensus        94 ~~vrPrklly~AiDGVAPrAKmnQQ-------------------RsRRfrsa~~~~~~~~~~~~~~~~~~~~g~~~~~~~  154 (899)
T 3fqd_A           94 AMVRPRQLLFIAIDGVAPRAKMNQQ-------------------RSRRFRSSREAALKEEELQAFIEEAKQQGIPIDENA  154 (899)
T ss_dssp             HHHCEEEEEEEECCCCCCHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCHHH
T ss_pred             HHcCcceeEEEeecCCCCchHHHHH-------------------HHHHHHhhhhhhhhHHHHHHHHHHHHhcCCCCcccc
Confidence            9999999999999999999999999                   999999999998887777788888888894333222


Q ss_pred             ccCCCCCCCccCCCChhHHHHHHHHHHHHHHHhcCCCCCCCcEEEEcCCCCC
Q psy6081         175 EKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNNDPGWKGIKVILSDANVP  226 (226)
Q Consensus       175 ~~~~~fDsN~ITPGT~FM~~L~~~L~~yI~~kl~~dp~W~~i~VI~Sds~VP  226 (226)
                      ..+..||||||||||+||.+|+.+|+|||++||++||+|++++|||||++||
T Consensus       155 ~~~~~fDsN~ITPGT~FM~~L~~~L~~~i~~kl~~dp~W~~~~VIlSd~~vP  206 (899)
T 3fqd_A          155 TKKKSWDSNCITPGTPFMDTLAKSLRYYIINKLNSDPCWRNVRFILSDASVP  206 (899)
T ss_dssp             HSCCCCCGGGSSTTSHHHHHHHHHHHHHHHHHHTSCGGGTTCEEEEECTTSC
T ss_pred             ccccCCCcCccCCccHHHHHHHHHHHHHHHHHhhcCcccccceEEEeCCCCC
Confidence            3568899999999999999999999999999999999999999999999998

>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A

Probab=100.00  E-value=1.4e-55  Score=450.74  Aligned_cols=145  Identities=52%  Similarity=0.929  Sum_probs=133.5

Q ss_pred             ccCeEEEecccccccccCCCCCC--CCCCHHHHHHHHHHHHHHHHhhhcccceEEEEEeCCCCccccccccccccccccC
Q psy6081          52 EFDNLYLDMNGIIHPCTHPEDKP--APKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYDR  129 (226)
Q Consensus        52 ~~DnLYLDmNgIIH~c~h~~~~~--~~~~e~e~~~~If~yID~Lv~iVrPrKllylAiDGVAPrAKmnQQ~~~~~~~~~~  129 (226)
                      +|||||||||||||+|+|+++.+  .+.+|++||.+||+|||+||++|||||+|||||||||||||||||          
T Consensus        28 e~DnLYlDmNgIIH~c~h~~~~~~~~~~te~e~~~~if~yid~l~~~vrPrkllyiAiDGVAPrAKmnqQ----------   97 (1155)
T 3pie_A           28 EFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEVYSKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQ----------   97 (1155)
T ss_pred             cCCeEEEecccceeeeecCCCCccccCCCHHHHHHHHHHHHHHHHHhcCcceEEEEEecCCCChhHHHHH----------
Confidence            89999999999999999999876  689999999999999999999999999999999999999999999          


Q ss_pred             CCchhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCCCccCCCChhHHHHHHHHHHHHHHHhcC
Q psy6081         130 GNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLNN  209 (226)
Q Consensus       130 ~~~~~~~~~RsRRfrsake~~e~~~~~~~~~~~l~~~g~~lp~~~~~~~~fDsN~ITPGT~FM~~L~~~L~~yI~~kl~~  209 (226)
                               |+||||++++++++       .++..+.|..+|.    +..||||||||||+||.+|+.+|+|||++|+++
T Consensus        98 ---------R~RRfrsa~~~~~~-------~~~~~~~g~~~~~----~~~fdsn~ITPGT~FM~~L~~~L~~~i~~k~~~  157 (1155)
T 3pie_A           98 ---------RARRFRTAMDAEKA-------LQKAIENGDELPK----GEPFDSNAITPGTEFMAKLTENLKYFIHDKITN  157 (1155)
T ss_pred             ---------HHHHHHhhhhhhHH-------HHHHHhcCCcCCc----ccccccccccCCcHHHHHHHHHHHHHHHHHhhC
Confidence                     99999999986432       2234567877663    478999999999999999999999999999999


Q ss_pred             CCCCCCcEEEEcCCCCC
Q psy6081         210 DPGWKGIKVILSDANVP  226 (226)
Q Consensus       210 dp~W~~i~VI~Sds~VP  226 (226)
                      ||.|++++|||||++||
T Consensus       158 d~~w~~~~vi~S~~~vP  174 (1155)
T 3pie_A          158 DTRWQNVKVIFSGHEVP  174 (1155)
T ss_pred             CcCccccEEEEeCCCCC
Confidence            99999999999999998

>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}

Probab=100.00  E-value=1e-53  Score=438.00  Aligned_cols=145  Identities=46%  Similarity=0.895  Sum_probs=123.7

Q ss_pred             CccCeEEEecccccccccCCCCCCC--CCCHHHHHHHHHHHHHHHHhhhcccceEEEEEeCCCCcccccccccccccccc
Q psy6081          51 MEFDNLYLDMNGIIHPCTHPEDKPA--PKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQPLTVYSVLYD  128 (226)
Q Consensus        51 ~~~DnLYLDmNgIIH~c~h~~~~~~--~~~e~e~~~~If~yID~Lv~iVrPrKllylAiDGVAPrAKmnQQ~~~~~~~~~  128 (226)
                      ++|||||||||||||+|+|+++.+.  +.+|++||++||+|||+||++|||||+|||||||||||||||||         
T Consensus        27 ~e~DnLYlDmNgIIH~c~h~~~~~~~~~~~e~e~~~~if~yid~l~~~vrPrkll~iAiDGvAPrAKmnqQ---------   97 (1140)
T 2y35_A           27 PEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQ---------   97 (1140)
T ss_dssp             CCCSEEEEEHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHCCSSEEEEECCCSCCHHHHHHH---------
T ss_pred             CcCCeEEEecchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHheeccceeEEEEecCCCchhHHHHH---------
Confidence            3899999999999999999987654  47999999999999999999999999999999999999999999         


Q ss_pred             CCCchhhhhhhhhhhhhcHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCCCccCCCChhHHHHHHHHHHHHHHHhc
Q psy6081         129 RGNYSTWQLMRSRRFRASKETAEKIAEVARIREKLLADGCILPPEKEKGSHFDSNCITPGTPFMACLSACLHYYIHDRLN  208 (226)
Q Consensus       129 ~~~~~~~~~~RsRRfrsake~~e~~~~~~~~~~~l~~~g~~lp~~~~~~~~fDsN~ITPGT~FM~~L~~~L~~yI~~kl~  208 (226)
                                |+||||+++++++..       ++..+.|...     ....||||||||||+||.+|+.+|++||++|++
T Consensus        98 ----------R~RRfrsa~~~~~~~-------~~~~~~g~~~-----~~~~fdsn~ITPGT~FM~~l~~~L~~~i~~k~~  155 (1140)
T 2y35_A           98 ----------RSRRFRTAREAEQQE-------AKAAQRGELR-----EHERFDSNCITPGTEFMVRLQEGLRAFLKTKIS  155 (1140)
T ss_dssp             ----------HHHHHHHHHHHHHHH-------HHHHHC------------CCCSGGGSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------HHHHhhhhhhhhhhH-------HHHhhcCCcc-----ccccCCccccCCCcHHHHHHHHHHHHHHHHHhc
Confidence                      999999999875322       2233455432     347899999999999999999999999999999


Q ss_pred             CCCCCCCcEEEEcCCCCC
Q psy6081         209 NDPGWKGIKVILSDANVP  226 (226)
Q Consensus       209 ~dp~W~~i~VI~Sds~VP  226 (226)
                      +||.|++++|||||++||
T Consensus       156 ~d~~w~~~~Vi~S~~~vP  173 (1140)
T 2y35_A          156 TDPLWQRCTVILSGQEAP  173 (1140)
T ss_dssp             HCGGGSSSEEEEECSSSC
T ss_pred             cCccccceEEEEeCCCCC
Confidence            999999999999999998

>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A

Probab=85.69  E-value=0.5  Score=42.13  Aligned_cols=61  Identities=16%  Similarity=0.150  Sum_probs=35.5

Q ss_pred             eEEEecccccccccCCC----CCCC----CCCHHHHHHHHHHHHHHHHhhhcccceEEEEEeCCCCccccccc
Q psy6081          55 NLYLDMNGIIHPCTHPE----DKPA----PKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQP  119 (226)
Q Consensus        55 nLYLDmNgIIH~c~h~~----~~~~----~~~e~e~~~~If~yID~Lv~iVrPrKllylAiDGVAPrAKmnQQ  119 (226)
                      -|-||.++.||.+.|.-    ..+.    -.... -+..+|..+-+|+.  .|-+ +++++||.+|..|....
T Consensus        23 ~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~-~l~g~~~~l~~ll~--~~i~-pv~VFDG~~~~~K~~~~   91 (340)
T 1b43_A           23 KIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITS-HLSGLFYRTINLME--AGIK-PVYVFDGEPPEFKKKEL   91 (340)
T ss_dssp             EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCH-HHHHHHHHHHHHHH--TTCE-EEEEECCSCCCCSSCSS
T ss_pred             EEEEEhHHHHHHHHHHhccccCCccccccCCchH-HHHHHHHHHHHHHh--CCCE-EEEEecCCCchhhhhhH
Confidence            68899999999875521    1111    01111 22233434444443  5555 56789999998876655

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00