Psyllid ID: psy6164

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60----
Protein Sequence
MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFERFDRGNFNI
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEcccEEEEEEEcccccccEEEEEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEccccEEEEEccccccccEEEEEEEcccHccccHHHHHccccccccc
Coil and Loop (DISEMBL)
mskrgrggsagaKFRISlalpvgavincadntgakNLFVIAVQGvkdlttfeeferfdrgnfni
Flexible Loop (DISEMBL)
mskrgrggsagakFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDlttfeeferfdrgnfni
Low Complexity Region (SEG)
MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFERFDRGNFNI
Disordered region (IsUnstruct)
************KFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFERF*******
Disordered Region (DISOPRED)
***************ISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFERFDRGNFNI
Disordered Region (DISEMBL)
***********AKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFERFDRGNFNI
Disordered Region (DISPRO)
**********GAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFERFDRGNFNI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFERFDRGNFNI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	64	2.2.26 [Sep-21-2011]
Q6PC14	140	60S ribosomal protein L23	yes	N/A	0.718	0.328	0.847	1e-16
Q5REU2	140	60S ribosomal protein L23	yes	N/A	0.718	0.328	0.847	1e-16
P62832	140	60S ribosomal protein L23	yes	N/A	0.718	0.328	0.847	1e-16
P62831	140	60S ribosomal protein L23	yes	N/A	0.718	0.328	0.847	1e-16
P62830	140	60S ribosomal protein L23	yes	N/A	0.718	0.328	0.847	1e-16
Q90YU5	140	60S ribosomal protein L23	N/A	N/A	0.718	0.328	0.847	1e-16
P62829	140	60S ribosomal protein L23	yes	N/A	0.718	0.328	0.847	1e-16
Q9XSU3	140	60S ribosomal protein L23	yes	N/A	0.718	0.328	0.847	1e-16
Q3T057	140	60S ribosomal protein L23	yes	N/A	0.718	0.328	0.847	1e-16
Q93140	140	60S ribosomal protein L23	N/A	N/A	0.718	0.328	0.869	2e-16

>sp|Q6PC14|RL23_DANRE 60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1  MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

Danio rerio (taxid: 7955)

>sp|Q5REU2|RL23_PONAB 60S ribosomal protein L23 OS=Pongo abelii GN=RPL23 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1  MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

Pongo abelii (taxid: 9601)

>sp|P62832|RL23_RAT 60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1  MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

Rattus norvegicus (taxid: 10116)

>sp|P62831|RL23_PIG 60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1  MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

Sus scrofa (taxid: 9823)

>sp|P62830|RL23_MOUSE 60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1  MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

Mus musculus (taxid: 10090)

>sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1  MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

Ictalurus punctatus (taxid: 7998)

>sp|P62829|RL23_HUMAN 60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1  MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

Homo sapiens (taxid: 9606)

>sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23 OS=Canis familiaris GN=RPL23 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1  MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

Canis familiaris (taxid: 9615)

>sp|Q3T057|RL23_BOVIN 60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1  MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

Bos taurus (taxid: 9913)

>sp|Q93140|RL23_BRUMA 60S ribosomal protein L23 OS=Brugia malayi GN=RPL23 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/46 (86%), Positives = 44/46 (95%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGG++GAKFRISL LPVGAV+NCADNTGAKNLFVIAV G+K
Sbjct: 1  MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVSGIK 46

Brugia malayi (taxid: 6279)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
110671520	140	putative ribosomal protein L17/23 [Diaph	0.718	0.328	1.0	4e-17
240849037	140	ribosomal protein L23-like [Acyrthosipho	0.718	0.328	0.956	2e-16
292397872	140	ribosomal protein L23 [Nylanderia nr. pu	0.796	0.364	0.862	2e-16
307170578	140	60S ribosomal protein L23 [Camponotus fl	0.718	0.328	0.934	2e-16
340724772	140	PREDICTED: 60S ribosomal protein L23-lik	0.718	0.328	0.934	3e-16
389608303	140	ribosomal protein L23 [Papilio xuthus] g	0.718	0.328	0.934	3e-16
66558956	140	PREDICTED: 60S ribosomal protein L23 [Ap	0.718	0.328	0.934	3e-16
112984274	140	ribosomal protein L23 [Bombyx mori] gi|1	0.718	0.328	0.934	3e-16
332375604	140	unknown [Dendroctonus ponderosae]	0.703	0.321	0.955	3e-16
242019454	140	60S ribosomal protein L23, putative [Ped	0.718	0.328	0.934	3e-16

>gi|110671520|gb|ABG82011.1| putative ribosomal protein L17/23 [Diaphorina citri]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/46 (100%), Positives = 46/46 (100%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK
Sbjct: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240849037|ref|NP_001155385.1| ribosomal protein L23-like [Acyrthosiphon pisum] gi|239799377|dbj|BAH70612.1| ACYPI000455 [Acyrthosiphon pisum]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/46 (95%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGSAGAKFRISL LPVGAVINCADNTGAKNLFVIAVQG+K
Sbjct: 1  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLFVIAVQGIK 46

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|292397872|gb|ADE27976.1| ribosomal protein L23 [Nylanderia nr. pubens LZ-2010]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/51 (86%), Positives = 46/51 (90%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTF 51
          MSKRGRGGSAGAKFRISL LPVGAVINCADNTGAKNL+VIAVQG+K   T 
Sbjct: 1  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLTL 51

Source: Nylanderia nr. pubens LZ-2010

Species: Nylanderia nr. pubens LZ-2010

Genus: Nylanderia

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170578|gb|EFN62772.1| 60S ribosomal protein L23 [Camponotus floridanus]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/46 (93%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGSAGAKFRISL LPVGAVINCADNTGAKNL+VIAVQG+K
Sbjct: 1  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIK 46

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724772|ref|XP_003400755.1| PREDICTED: 60S ribosomal protein L23-like [Bombus terrestris]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/46 (93%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGSAGAKFRISL LPVGAVINCADNTGAKNL+VIAVQG+K
Sbjct: 1  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIK 46

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608303|dbj|BAM17763.1| ribosomal protein L23 [Papilio xuthus] gi|389610691|dbj|BAM18957.1| ribosomal protein L23 [Papilio polytes]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/46 (93%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGSAGAKFRISL LPVGAVINCADNTGAKNL+VIAVQG+K
Sbjct: 1  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIK 46

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66558956|ref|XP_392812.2| PREDICTED: 60S ribosomal protein L23 [Apis mellifera] gi|156545547|ref|XP_001605069.1| PREDICTED: 60S ribosomal protein L23-like [Nasonia vitripennis] gi|380028209|ref|XP_003697800.1| PREDICTED: 60S ribosomal protein L23-like [Apis florea] gi|383854692|ref|XP_003702854.1| PREDICTED: 60S ribosomal protein L23-like [Megachile rotundata] gi|62083503|gb|AAX62476.1| ribosomal protein L23 [Lysiphlebus testaceipes] gi|90819996|gb|ABD98755.1| putative ribosomal protein L17/23 [Graphocephala atropunctata]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/46 (93%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGSAGAKFRISL LPVGAVINCADNTGAKNL+VIAVQG+K
Sbjct: 1  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIK 46

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112984274|ref|NP_001037227.1| ribosomal protein L23 [Bombyx mori] gi|15081322|gb|AAK83857.1|AF395586_1 ribosomal protein L17/23 [Spodoptera frugiperda] gi|49532860|dbj|BAD26665.1| Ribosomal protein L17/23 [Plutella xylostella] gi|54609237|gb|AAV34834.1| ribosomal protein L23 [Bombyx mori] gi|268306378|gb|ACY95310.1| ribosomal protein L23 [Manduca sexta] gi|315115429|gb|ADT80687.1| ribosomal protein L23 [Euphydryas aurinia] gi|342356417|gb|AEL28867.1| ribosomal protein L23 [Heliconius melpomene cythera] gi|357620607|gb|EHJ72748.1| ribosomal protein L23 [Danaus plexippus]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/46 (93%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGSAGAKFRISL LPVGAVINCADNTGAKNL+VIAVQG+K
Sbjct: 1  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIK 46

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375604|gb|AEE62943.1| unknown [Dendroctonus ponderosae]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/45 (95%), Positives = 45/45 (100%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGV 45
          MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNL+VIAVQG+
Sbjct: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLYVIAVQGI 45

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019454|ref|XP_002430176.1| 60S ribosomal protein L23, putative [Pediculus humanus corporis] gi|212515267|gb|EEB17438.1| 60S ribosomal protein L23, putative [Pediculus humanus corporis]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/46 (93%), Positives = 45/46 (97%)

Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGSAGAKFRISL LPVGAVINCADNTGAKNL+VIAVQG+K
Sbjct: 1  MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIK 46

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
UNIPROTKB|Q3T057	140	RPL23 "60S ribosomal protein L	0.718	0.328	0.847	5.3e-17
UNIPROTKB|F2Z4P3	140	RPL23 "60S ribosomal protein L	0.718	0.328	0.847	5.3e-17
UNIPROTKB|J9P897	140	J9P897 "Uncharacterized protei	0.718	0.328	0.847	5.3e-17
UNIPROTKB|Q9XSU3	140	RPL23 "60S ribosomal protein L	0.718	0.328	0.847	5.3e-17
UNIPROTKB|B9ZVP7	114	RPL23 "60S ribosomal protein L	0.718	0.403	0.847	5.3e-17
UNIPROTKB|J3KT29	122	RPL23 "60S ribosomal protein L	0.718	0.377	0.847	5.3e-17
UNIPROTKB|P62829	140	RPL23 "60S ribosomal protein L	0.718	0.328	0.847	5.3e-17
UNIPROTKB|P62831	140	RPL23 "60S ribosomal protein L	0.718	0.328	0.847	5.3e-17
MGI|MGI:1929455	140	Rpl23 "ribosomal protein L23"	0.718	0.328	0.847	5.3e-17
RGD|62067	140	Rpl23 "ribosomal protein L23"	0.718	0.328	0.847	5.3e-17

UNIPROTKB|Q3T057 RPL23 "60S ribosomal protein L23" [Bos taurus (taxid:9913)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query:     1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
             MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct:     1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F2Z4P3 RPL23 "60S ribosomal protein L23" [Canis lupus familiaris (taxid:9615)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query:     1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
             MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct:     1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|J9P897 J9P897 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query:     1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
             MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct:     1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q9XSU3 RPL23 "60S ribosomal protein L23" [Canis lupus familiaris (taxid:9615)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query:     1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
             MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct:     1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|B9ZVP7 RPL23 "60S ribosomal protein L23" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query:     1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
             MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct:     1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|J3KT29 RPL23 "60S ribosomal protein L23" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query:     1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
             MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct:     1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|P62829 RPL23 "60S ribosomal protein L23" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query:     1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
             MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct:     1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

GO:0005730 "nucleolus" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005840 "ribosome" evidence=NAS

GO:0006610 "ribosomal protein import into nucleus" evidence=NAS

GO:0006412 "translation" evidence=NAS;TAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P62831 RPL23 "60S ribosomal protein L23" [Sus scrofa (taxid:9823)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query:     1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
             MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct:     1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:1929455 Rpl23 "ribosomal protein L23" [Mus musculus (taxid:10090)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query:     1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
             MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct:     1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

GO:0003735 "structural constituent of ribosome" evidence=ISA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0022626 "cytosolic ribosome" evidence=ISA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|62067 Rpl23 "ribosomal protein L23" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 39/46 (84%), Positives = 45/46 (97%)

Query:     1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
             MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct:     1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A0RVY3	RL14_CENSY	No assigned EC number	0.5217	0.6718	0.2986	yes	N/A
Q3T057	RL23_BOVIN	No assigned EC number	0.8478	0.7187	0.3285	yes	N/A
P62832	RL23_RAT	No assigned EC number	0.8478	0.7187	0.3285	yes	N/A
P62831	RL23_PIG	No assigned EC number	0.8478	0.7187	0.3285	yes	N/A
P62830	RL23_MOUSE	No assigned EC number	0.8478	0.7187	0.3285	yes	N/A
B1L776	RL14_KORCO	No assigned EC number	0.5555	0.5625	0.2553	yes	N/A
Q54G86	RL23_DICDI	No assigned EC number	0.6578	0.5937	0.2794	yes	N/A
P0CX42	RL23B_YEAST	No assigned EC number	0.7027	0.5781	0.2700	yes	N/A
P0CX41	RL23A_YEAST	No assigned EC number	0.7027	0.5781	0.2700	yes	N/A
P48158	RL23_CAEEL	No assigned EC number	0.8260	0.7187	0.3285	yes	N/A
P48159	RL23_DROME	No assigned EC number	0.8260	0.7187	0.3285	yes	N/A
P49690	RL23_ARATH	No assigned EC number	0.7173	0.7187	0.3285	yes	N/A
P62829	RL23_HUMAN	No assigned EC number	0.8478	0.7187	0.3285	yes	N/A
O42867	RL23_SCHPO	No assigned EC number	0.5853	0.6406	0.2949	yes	N/A
P52816	RL23_ONCVO	No assigned EC number	0.8695	0.7187	0.9583	N/A	N/A
Q6PC14	RL23_DANRE	No assigned EC number	0.8478	0.7187	0.3285	yes	N/A
Q9XSU3	RL23_CANFA	No assigned EC number	0.8478	0.7187	0.3285	yes	N/A
Q5REU2	RL23_PONAB	No assigned EC number	0.8478	0.7187	0.3285	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	64
PTZ00054	139	PTZ00054, PTZ00054, 60S ribosomal protein L23; Pro	1e-21
PRK08571	132	PRK08571, rpl14p, 50S ribosomal protein L14P; Revi	4e-09
TIGR03673	131	TIGR03673, rpl14p_arch, 50S ribosomal protein L14P	2e-08
COG0093	122	COG0093, RplN, Ribosomal protein L14 [Translation,	1e-05
pfam00238	122	pfam00238, Ribosomal_L14, Ribosomal protein L14p/L	3e-05

>gnl|CDD|185418 PTZ00054, PTZ00054, 60S ribosomal protein L23; Provisional

 Score = 80.5 bits (199), Expect = 1e-21
 Identities = 31/45 (68%), Positives = 39/45 (86%)

Query: 2  SKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
           KRGRGG  G KFR++L LPVGAV+NCADN+GAKNL++IAV+G+ 
Sbjct: 1  MKRGRGGVGGNKFRVTLGLPVGAVVNCADNSGAKNLYIIAVKGIH 45

Length = 139

>gnl|CDD|181478 PRK08571, rpl14p, 50S ribosomal protein L14P; Reviewed

 Score = 48.4 bits (116), Expect = 4e-09
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          G + +++  LPVGA + CADNTGAK + +I+V+G K
Sbjct: 3  GIRSKVTRGLPVGARLVCADNTGAKEVEIISVKGYK 38

Length = 132

>gnl|CDD|132712 TIGR03673, rpl14p_arch, 50S ribosomal protein L14P

 Score = 46.6 bits (111), Expect = 2e-08
 Identities = 21/36 (58%), Positives = 28/36 (77%)

Query: 11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          G +  I+ ALPVGA++ CADNTGAK + VI+V+G K
Sbjct: 2  GIRAGITRALPVGALLVCADNTGAKEVEVISVKGYK 37

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges. Length = 131

>gnl|CDD|223171 COG0093, RplN, Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

 Score = 39.1 bits (92), Expect = 1e-05
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 19 ALPVGAVINCADNTGAKNLFVIAVQGVK 46
           + V   +N ADN+GAK +  I V G  
Sbjct: 1  MIQVQTRLNVADNSGAKEVMCIKVLGGS 28

Length = 122

>gnl|CDD|201105 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e

 Score = 38.2 bits (90), Expect = 3e-05
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 19 ALPVGAVINCADNTGAKNLFVIAVQGVK 46
           + VG  +N ADN+GAK +  I V G  
Sbjct: 1  MIQVGTRLNVADNSGAKKVKCIKVLGGS 28

Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	64
KOG0901|consensus	145		99.82
PTZ00054	139	60S ribosomal protein L23; Provisional	99.57
PRK08571	132	rpl14p 50S ribosomal protein L14P; Reviewed	99.53
TIGR03673	131	rpl14p_arch 50S ribosomal protein L14P. Part of th	99.5
COG0093	122	RplN Ribosomal protein L14 [Translation, ribosomal	99.26
CHL00057	122	rpl14 ribosomal protein L14	99.13
PRK05483	122	rplN 50S ribosomal protein L14; Validated	99.12
TIGR01067	122	rplN_bact ribosomal protein L14, bacterial/organel	99.12
PF00238	122	Ribosomal_L14: Ribosomal protein L14p/L23e; InterP	99.03
PTZ00320	188	ribosomal protein L14; Provisional	98.56

>KOG0901|consensus

Probab=99.82  E-value=8.5e-21  Score=130.69  Aligned_cols=56  Identities=64%  Similarity=0.986  Sum_probs=54.1

Q ss_pred             CCCCCCCCCCcccceeecccccccEEEEecCcCCceEEEEEEeCccccccchhhhc
Q psy6164           1 MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFER   56 (64)
Q Consensus         1 m~k~~~~~~~~~k~rit~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~~~~   56 (64)
                      ||+.+++++.+.++|+++|||+|+.+|||||||||+|+||+|+|++|||||||...
T Consensus         1 ~~~~~~~gs~~~k~r~s~~~~~g~~incaDNSgAknL~~isv~g~~Grlnrl~~A~   56 (145)
T KOG0901|consen    1 MSSRGRGGSSGVKFRISLGLPVGAVINCADNSGAKNLYCISVKGIKGRLNRLPAAG   56 (145)
T ss_pred             CcccccCcccchhhhhhhccccceEEEecCCCCcceEEEEEEeccccccccccCCC
Confidence            89999999999999999999999999999999999999999999999999999754

>PTZ00054 60S ribosomal protein L23; Provisional

Probab=99.57  E-value=2.9e-15  Score=102.17  Aligned_cols=50  Identities=58%  Similarity=1.000  Sum_probs=44.1

Q ss_pred             CCCCCCcccceeecccccccEEEEecCcCCceEEEEEEeCccccccchhh
Q psy6164           5 GRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEF   54 (64)
Q Consensus         5 ~~~~~~~~k~rit~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~~   54 (64)
                      +.+...+.++++|+|||++|+|+||||||||.++||+|+|++|..+|.++
T Consensus         4 ~~~~~~~~~~~~~~mIq~~t~L~vaDNSGAk~v~cI~vlg~~g~~~r~~~   53 (139)
T PTZ00054          4 GRGGVGGNKFRVTLGLPVGAVVNCADNSGAKNLYIIAVKGIHGRLNRLPS   53 (139)
T ss_pred             cccCccccccccceeecCCCEEEEeeCCCccEEEEEEEeccCcCCccCcc
Confidence            44566788999999999999999999999999999999998888887544

>PRK08571 rpl14p 50S ribosomal protein L14P; Reviewed

Probab=99.53  E-value=7.9e-15  Score=99.19  Aligned_cols=44  Identities=41%  Similarity=0.634  Sum_probs=40.3

Q ss_pred             cccceeecccccccEEEEecCcCCceEEEEEEeCccccccchhh
Q psy6164          11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEF   54 (64)
Q Consensus        11 ~~k~rit~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~~   54 (64)
                      +.++++|+|||.+|+|+||||||||.++||+|+|++|..+|.++
T Consensus         3 ~~~~~~~~mIq~~T~L~VaDNSGAk~v~cI~vlg~~g~~~r~~~   46 (132)
T PRK08571          3 GIRSKVTRGLPVGARLVCADNTGAKEVEIISVKGYKGVKRRLPK   46 (132)
T ss_pred             cccccccceecCCCEEEEeeCCCCCeEEEEEEeccCCCCccCCc
Confidence            56899999999999999999999999999999999888888654

>TIGR03673 rpl14p_arch 50S ribosomal protein L14P

Probab=99.50  E-value=1.8e-14  Score=97.32  Aligned_cols=44  Identities=45%  Similarity=0.671  Sum_probs=39.9

Q ss_pred             cccceeecccccccEEEEecCcCCceEEEEEEeCccccccchhh
Q psy6164          11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEF   54 (64)
Q Consensus        11 ~~k~rit~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~~   54 (64)
                      +.++++|.|||.+|+|+||||||||.++||+|++++|..+|.++
T Consensus         2 ~~~~~~~~mIq~~t~L~VaDNSGak~v~cI~vl~~~g~~~r~~~   45 (131)
T TIGR03673         2 GIRAGITRALPVGSLLVCADNTGAKEVEVISVKGYKGVKRRLPC   45 (131)
T ss_pred             CcccccceeeccCCEEEEeeCCCCceEEEEEEeeeCCCcccCCc
Confidence            35788999999999999999999999999999999988888654

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.

>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=4.3e-12  Score=85.92  Aligned_cols=30  Identities=37%  Similarity=0.498  Sum_probs=26.8

Q ss_pred             ccccccEEEEecCcCCceEEEEEEeCcccc
Q psy6164          19 ALPVGAVINCADNTGAKNLFVIAVQGVKDL   48 (64)
Q Consensus        19 giq~~s~lnvADNSGAK~l~iI~V~g~kgr   48 (64)
                      |||++|+|+||||||||+++||+|+|.+.|
T Consensus         1 miq~~t~l~vADNSGAk~v~~I~V~gg~~r   30 (122)
T COG0093           1 MIQVQTRLNVADNSGAKEVMCIKVLGGSRR   30 (122)
T ss_pred             CcccccEEEEccCCCCcEEEEEEEeccccc
Confidence            799999999999999999999999954433

>CHL00057 rpl14 ribosomal protein L14

Probab=99.13  E-value=5e-11  Score=79.47  Aligned_cols=29  Identities=34%  Similarity=0.574  Sum_probs=26.7

Q ss_pred             ccccccEEEEecCcCCceEEEEEEeCccc
Q psy6164          19 ALPVGAVINCADNTGAKNLFVIAVQGVKD   47 (64)
Q Consensus        19 giq~~s~lnvADNSGAK~l~iI~V~g~kg   47 (64)
                      |||.+|+|+||||||||.++||+|+|.+.
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~   29 (122)
T CHL00057          1 MIQPQTYLNVADNSGARKLMCIRVLGASN   29 (122)
T ss_pred             CCCcCCEEEEeECCCCcEEEEEEEeCCCC
Confidence            79999999999999999999999997543

>PRK05483 rplN 50S ribosomal protein L14; Validated

Probab=99.12  E-value=6.3e-11  Score=78.88  Aligned_cols=27  Identities=37%  Similarity=0.524  Sum_probs=25.8

Q ss_pred             ccccccEEEEecCcCCceEEEEEEeCc
Q psy6164          19 ALPVGAVINCADNTGAKNLFVIAVQGV   45 (64)
Q Consensus        19 giq~~s~lnvADNSGAK~l~iI~V~g~   45 (64)
                      |||.+|+|+||||||||.++||+|+|.
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~g~   27 (122)
T PRK05483          1 MIQQETRLNVADNSGAKEVMCIKVLGG   27 (122)
T ss_pred             CCCCCCEEEEeECCCCCEEEEEEEeCC
Confidence            799999999999999999999999974

>TIGR01067 rplN_bact ribosomal protein L14, bacterial/organelle

Probab=99.12  E-value=6.5e-11  Score=78.74  Aligned_cols=27  Identities=37%  Similarity=0.475  Sum_probs=25.7

Q ss_pred             ccccccEEEEecCcCCceEEEEEEeCc
Q psy6164          19 ALPVGAVINCADNTGAKNLFVIAVQGV   45 (64)
Q Consensus        19 giq~~s~lnvADNSGAK~l~iI~V~g~   45 (64)
                      |||.+|+|+||||||||.++||+|+|.
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~   27 (122)
T TIGR01067         1 MIQQQSRLNVADNSGAKKVQCIKVLGG   27 (122)
T ss_pred             CCCcCCEEEEeECCCCcEEEEEEEeCC
Confidence            799999999999999999999999973

This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms.

>PF00238 Ribosomal_L14: Ribosomal protein L14p/L23e; InterPro: IPR000218 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.03  E-value=1.6e-10  Score=76.33  Aligned_cols=28  Identities=39%  Similarity=0.595  Sum_probs=25.9

Q ss_pred             ccccccEEEEecCcCCceEEEEEEeCcc
Q psy6164          19 ALPVGAVINCADNTGAKNLFVIAVQGVK   46 (64)
Q Consensus        19 giq~~s~lnvADNSGAK~l~iI~V~g~k   46 (64)
                      |||.+|.|+||||||||.++||+|++++
T Consensus         1 MIq~~t~L~v~DNSGak~v~cI~v~~~~   28 (122)
T PF00238_consen    1 MIQKGTILKVADNSGAKKVKCIKVLGGK   28 (122)
T ss_dssp             -BETTEEEEESBSSSEEEEEEEEETSST
T ss_pred             CCCCCCEEEEeeCCCCcEEEEEEEeCCc
Confidence            8999999999999999999999999865

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L14 is one of the proteins from the large ribosomal subunit. In eubacteria, L14 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins, which have been grouped on the basis of sequence similarities []. Based on amino-acid sequence homology, it is predicted that ribosomal protein L14 is a member of a recently identified family of structurally related RNA-binding proteins []. L14 is a protein of 119 to 137 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_M 4A1C_J 4A1E_J 4A1A_J 4A17_J 1VSP_I 3D5D_O 1VSA_I 3MRZ_K 3F1F_O ....

>PTZ00320 ribosomal protein L14; Provisional

Probab=98.56  E-value=8.1e-08  Score=68.97  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=22.6

Q ss_pred             cccccEEEEecCcCCceEEEEEEe
Q psy6164          20 LPVGAVINCADNTGAKNLFVIAVQ   43 (64)
Q Consensus        20 iq~~s~lnvADNSGAK~l~iI~V~   43 (64)
                      ..-+|+|+||||||||.++||+|+
T Consensus        60 ~~~qT~L~VaDNSGAK~V~CIkVl   83 (188)
T PTZ00320         60 FSDQVKLHCVDNTNCKHVRLISKA   83 (188)
T ss_pred             cCCCcEEEEEeCCCCcEEEEEEEe
Confidence            457899999999999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	64
2zkr_k	140	Structure Of A Mammalian Ribosomal 60s Subunit With		9e-18
3izr_M	140	Localization Of The Large Subunit Ribosomal Protein		1e-15
4a17_J	141	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-11
3zf7_W	139	High-resolution Cryo-electron Microscopy Structure		5e-11
1s1i_R	137	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		8e-11
2x7n_C	132	Mechanism Of Eif6s Anti-Association Activity Length		3e-10
3jyw_R	131	Structure Of The 60s Proteins For Eukaryotic Riboso		3e-10

>pdb|2ZKR|KK Chain k, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 140

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 45/46 (97%)
Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGS+GAKFRISL LPVGAVINCADNTGAKNL++I+V+G+K
Sbjct: 1  MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIK 46

>pdb|3IZR|M Chain M, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 140

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/46 (76%), Positives = 42/46 (91%)
Query: 1  MSKRGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          MSKRGRGGSAG KFR+SL LPV A +NCADNTGAKNL++I+V+G+K
Sbjct: 1  MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIK 46

>pdb|4A17|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 141

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 35/43 (81%)
Query: 4  RGRGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
          RGRGG  G K ++SL LPVGAV+NCADN+GAKNL+ IA  G+K
Sbjct: 5  RGRGGQVGTKAKVSLGLPVGAVMNCADNSGAKNLYTIACFGIK 47

>pdb|3ZF7|W Chain W, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 139

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 33/34 (97%)
Query: 11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQG 44
          G +FR+SLALPVGAV+NCADNTGAKNL++I+V+G
Sbjct: 10 GCRFRVSLALPVGAVVNCADNTGAKNLYIISVKG 43

>pdb|1S1I|R Chain R, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 137

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 34/37 (91%)
Query: 8  GSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQG 44
          G+ G KFRISL LPVGA++NCADN+GA+NL++IAV+G
Sbjct: 5  GAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKG 41

>pdb|2X7N|C Chain C, Mechanism Of Eif6s Anti-Association Activity Length = 132

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 32/34 (94%)
Query: 11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQG 44
          G KFRISL LPVGA++NCADN+GA+NL++IAV+G
Sbjct: 3  GTKFRISLGLPVGAIMNCADNSGARNLYIIAVKG 36

>pdb|3JYW|R Chain R, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 131

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 32/34 (94%)
Query: 11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQG 44
          G KFRISL LPVGA++NCADN+GA+NL++IAV+G
Sbjct: 2  GTKFRISLGLPVGAIMNCADNSGARNLYIIAVKG 35

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	64
3u5e_V	137	L17A, YL32, 60S ribosomal protein L23-A; translati	2e-09
1vq8_K	132	50S ribosomal protein L14P; ribosome 50S, protein-	7e-09
3bbo_M	121	Ribosomal protein L14; large ribosomal subunit, sp	1e-04
1whi_A	122	Ribosomal protein L14; rRNA-binding; 1.50A {Geobac	1e-04
3r8s_K	122	50S ribosomal protein L14; protein biosynthesis, R	2e-04
3v2d_O	122	50S ribosomal protein L14; ribosome associated inh	3e-04

>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J Length = 137

 Score = 49.0 bits (116), Expect = 2e-09
 Identities = 26/38 (68%), Positives = 34/38 (89%)

Query: 7  GGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQG 44
           G+ G KFRISL LPVGA++NCADN+GA+NL++IAV+G
Sbjct: 4  NGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKG 41

>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ... Length = 132

 Score = 47.4 bits (112), Expect = 7e-09
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVK 46
               ++  L  G++I CADNTGA+ L VI+V G  
Sbjct: 3  ALGADVTQGLEKGSLITCADNTGARELKVISVHGYS 38

>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 121

 Score = 36.2 bits (83), Expect = 1e-04
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 22 VGAVINCADNTGAKNLFVIAVQG 44
              +N ADN+GA+ L  I + G
Sbjct: 4  PQTHLNVADNSGARELMCIRIIG 26

>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M Length = 122

 Score = 35.8 bits (82), Expect = 1e-04
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 22 VGAVINCADNTGAKNLFVIAVQG 44
            + +  ADN+GA+ + VI V G
Sbjct: 4  QESRLKVADNSGAREVLVIKVLG 26

>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* 2qao_K* ... Length = 122

 Score = 35.4 bits (81), Expect = 2e-04
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 22 VGAVINCADNTGAKNLFVIAVQG 44
             ++N ADN+GA+ +  I V G
Sbjct: 4  EQTMLNVADNSGARRVMCIKVLG 26

>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ... Length = 122

 Score = 35.0 bits (80), Expect = 3e-04
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 22 VGAVINCADNTGAKNLFVIAVQG 44
              +  ADNTGA+ +  I V  
Sbjct: 4  PQTYLEVADNTGARKIMCIRVLK 26

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	64
3j21_J	141	50S ribosomal protein L14P; archaea, archaeal, KIN	99.82
3u5e_V	137	L17A, YL32, 60S ribosomal protein L23-A; translati	99.75
1vq8_K	132	50S ribosomal protein L14P; ribosome 50S, protein-	99.66
1whi_A	122	Ribosomal protein L14; rRNA-binding; 1.50A {Geobac	99.31
3bbo_M	121	Ribosomal protein L14; large ribosomal subunit, sp	99.31
3v2d_O	122	50S ribosomal protein L14; ribosome associated inh	99.28
3r8s_K	122	50S ribosomal protein L14; protein biosynthesis, R	99.27

>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.82  E-value=5.8e-21  Score=129.46  Aligned_cols=55  Identities=36%  Similarity=0.504  Sum_probs=44.0

Q ss_pred             CCCCCCCCCCc-ccceeecccccccEEEEecCcCCceEEEEEEeCccccccchhhh
Q psy6164           1 MSKRGRGGSAG-AKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFE   55 (64)
Q Consensus         1 m~k~~~~~~~~-~k~rit~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~~~   55 (64)
                      |||+++|+..+ +++++|+|||++|+|+||||||||+++||+|+|++|+++|.|+-
T Consensus         1 ~~~~~~~~~~~~~~~~~~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A   56 (141)
T 3j21_J            1 MAKKGAGATRGVSAVRPTRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASA   56 (141)
T ss_dssp             ---------CCCCCSBCCCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCB
T ss_pred             CCccccCCccccccccccceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccC
Confidence            89999999998 89999999999999999999999999999999999999998764

>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J

Probab=99.75  E-value=7.3e-19  Score=118.70  Aligned_cols=51  Identities=51%  Similarity=0.843  Sum_probs=47.5

Q ss_pred             CCCCCcccceeecccccccEEEEecCcCCceEEEEEEeCccccccchhhhc
Q psy6164           6 RGGSAGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFER   56 (64)
Q Consensus         6 ~~~~~~~k~rit~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~~~~   56 (64)
                      +|++++.++++|++||++|+|+||||||||.++||+|+|+++|+||+++-.
T Consensus         3 ~~~~~~~~~~~~~gl~~~t~L~VaDNSGAk~v~cI~Vlg~~~r~~r~~~A~   53 (137)
T 3u5e_V            3 GNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAAS   53 (137)
T ss_dssp             CSSCCSCCCCCCCCEETTCEEEECBSSSBCEEEEEEETTCCCCTTCCCEEC
T ss_pred             ccccCcceeeecccccCCCEEEEeeCCCCcEEEEEEEeCCCCcccccccCC
Confidence            577889999999999999999999999999999999999999999987643

>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...

Probab=99.66  E-value=4.3e-17  Score=109.31  Aligned_cols=46  Identities=33%  Similarity=0.446  Sum_probs=42.7

Q ss_pred             CcccceeecccccccEEEEecCcCCceEEEEEEeCccccccchhhh
Q psy6164          10 AGAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFE   55 (64)
Q Consensus        10 ~~~k~rit~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~~~   55 (64)
                      .+.++++|+|||++|+|+||||||||+++||+|+|++|+++|.|.-
T Consensus         2 ~~~~~~~~~mIq~~t~l~vaDNSGAk~v~cI~V~g~~g~~~r~p~a   47 (132)
T 1vq8_K            2 EALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKA   47 (132)
T ss_dssp             CCCSSEECCCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEE
T ss_pred             CCcccccccccccCCEEEEeeCCCCcEEEEEEEeCccCcccccCCC
Confidence            4568999999999999999999999999999999999999998653

>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M

Probab=99.31  E-value=1e-12  Score=86.96  Aligned_cols=31  Identities=29%  Similarity=0.431  Sum_probs=28.1

Q ss_pred             ccccccEEEEecCcCCceEEEEEEeCccccccc
Q psy6164          19 ALPVGAVINCADNTGAKNLFVIAVQGVKDLTTF   51 (64)
Q Consensus        19 giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr   51 (64)
                      |||.+|+|+||||||||.++||+|+|  |+++|
T Consensus         1 MIq~~t~l~vaDNSGAk~v~cI~vlg--g~~~r   31 (122)
T 1whi_A            1 MIQQESRLKVADNSGAREVLVIKVLG--GSGRR   31 (122)
T ss_dssp             CBCTTCEEEECBSSSEEEEEEEEECS--STTCC
T ss_pred             CCCccCEEEEeECCCCcEEEEEEEcC--CCccc
Confidence            79999999999999999999999999  55554

>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.31  E-value=9.7e-13  Score=87.04  Aligned_cols=31  Identities=29%  Similarity=0.440  Sum_probs=28.2

Q ss_pred             ccccccEEEEecCcCCceEEEEEEeCccccccc
Q psy6164          19 ALPVGAVINCADNTGAKNLFVIAVQGVKDLTTF   51 (64)
Q Consensus        19 giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr   51 (64)
                      |||++|+|+||||||||+++||+|+|  |+++|
T Consensus         1 MIq~~t~l~vaDNSGAk~v~cI~Vlg--g~~~r   31 (121)
T 3bbo_M            1 MIQPQTHLNVADNSGARELMCIRIIG--ASNRR   31 (121)
T ss_dssp             CCCSSCEEEECSSSSEEEEEEEEECS--SSCCC
T ss_pred             CCCccCEEEEeeCCCCcEEEEEEEcC--CCCcc
Confidence            79999999999999999999999999  55554

>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...

Probab=99.28  E-value=2.1e-12  Score=85.50  Aligned_cols=30  Identities=27%  Similarity=0.385  Sum_probs=27.8

Q ss_pred             ccccccEEEEecCcCCceEEEEEEeCcccc
Q psy6164          19 ALPVGAVINCADNTGAKNLFVIAVQGVKDL   48 (64)
Q Consensus        19 giq~~s~lnvADNSGAK~l~iI~V~g~kgr   48 (64)
                      |||.+|+|+||||||||.++||+|+|.+.+
T Consensus         1 MIq~~t~L~vaDNSGAk~v~cI~Vlg~~~r   30 (122)
T 3v2d_O            1 MIQPQTYLEVADNTGARKIMCIRVLKGSNA   30 (122)
T ss_dssp             CBCTTCEEEECBSSSEEEEEEEEEESTTTC
T ss_pred             CCCCCCEEEEeeCCCCcEEEEEEEeCCCCC
Confidence            799999999999999999999999997544

>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...

Probab=99.27  E-value=2.3e-12  Score=85.35  Aligned_cols=30  Identities=30%  Similarity=0.474  Sum_probs=27.6

Q ss_pred             ccccccEEEEecCcCCceEEEEEEeCcccc
Q psy6164          19 ALPVGAVINCADNTGAKNLFVIAVQGVKDL   48 (64)
Q Consensus        19 giq~~s~lnvADNSGAK~l~iI~V~g~kgr   48 (64)
                      |||.+|+|+||||||||.++||+|+|.+.+
T Consensus         1 MIq~~t~L~vaDNSGAk~v~cI~Vlgg~~r   30 (122)
T 3r8s_K            1 MIQEQTMLNVADNSGARRVMCIKVLGGSHR   30 (122)
T ss_dssp             CBCTTCEEEECBTTSEEEEEEEEECSSSSC
T ss_pred             CCCCCCEEEEccCCCCceEEEEEEeCCCCC
Confidence            799999999999999999999999996543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	64
d1vqok1	132	b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon	6e-10
d2gyci1	121	b.39.1.1 (I:2-122) Ribosomal protein L14 {Escheric	1e-04
d1whia_	122	b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stea	2e-04
d2j01o1	122	b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus	3e-04

>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 132

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 49.0 bits (117), Expect = 6e-10
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQG 44
               ++  L  G++I CADNTGA+ L VI+V G
Sbjct: 3  ALGADVTQGLEKGSLITCADNTGARELKVISVHG 36

>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]} Length = 121

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Escherichia coli [TaxId: 562]

 Score = 34.8 bits (80), Expect = 1e-04
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 22 VGAVINCADNTGAKNLFVIAVQG 44
             ++N ADN+GA+ +  I V G
Sbjct: 3  EQTMLNVADNSGARRVMCIKVLG 25

>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]} Length = 122

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 34.4 bits (79), Expect = 2e-04
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 22 VGAVINCADNTGAKNLFVIAVQG 44
            + +  ADN+GA+ + VI V G
Sbjct: 4  QESRLKVADNSGAREVLVIKVLG 26

>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]} Length = 122

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Thermus thermophilus [TaxId: 274]

 Score = 33.9 bits (78), Expect = 3e-04
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 22 VGAVINCADNTGAKNLFVIAVQG 44
              +  ADNTGA+ +  I V  
Sbjct: 4  PQTYLEVADNTGARKIMCIRVLK 26

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	64
d1vqok1	132	Ribosomal protein L14 {Archaeon Haloarcula marismo	99.51
d1whia_	122	Ribosomal protein L14 {Bacillus stearothermophilus	99.2
d2j01o1	122	Ribosomal protein L14 {Thermus thermophilus [TaxId	99.15
d2gyci1	121	Ribosomal protein L14 {Escherichia coli [TaxId: 56	99.03

>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.51  E-value=3.6e-15  Score=98.09  Aligned_cols=45  Identities=33%  Similarity=0.456  Sum_probs=41.4

Q ss_pred             cccceeecccccccEEEEecCcCCceEEEEEEeCccccccchhhh
Q psy6164          11 GAKFRISLALPVGAVINCADNTGAKNLFVIAVQGVKDLTTFEEFE   55 (64)
Q Consensus        11 ~~k~rit~giq~~s~lnvADNSGAK~l~iI~V~g~kgrlnr~~~~   55 (64)
                      +-+.++++|||.+|+|+||||||||.++||+|+|++++.+|.|+-
T Consensus         3 ~~~~~~~~~Iq~~s~L~v~DNSGak~v~cI~V~~~~~~k~r~~~a   47 (132)
T d1vqok1           3 ALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKA   47 (132)
T ss_dssp             CCSSEECCCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEE
T ss_pred             cccccccccccccCEEEEeeCCCCceEEEEEEecccccccccccc
Confidence            346789999999999999999999999999999999999998764

>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.20  E-value=4.7e-12  Score=81.79  Aligned_cols=31  Identities=29%  Similarity=0.442  Sum_probs=28.8

Q ss_pred             ccccccEEEEecCcCCceEEEEEEeCccccc
Q psy6164          19 ALPVGAVINCADNTGAKNLFVIAVQGVKDLT   49 (64)
Q Consensus        19 giq~~s~lnvADNSGAK~l~iI~V~g~kgrl   49 (64)
                      |||.+|+|+|+||||||.++||+|++++++.
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~   31 (122)
T d1whia_           1 MIQQESRLKVADNSGAREVLVIKVLGGSGRR   31 (122)
T ss_dssp             CBCTTCEEEECBSSSEEEEEEEEECSSTTCC
T ss_pred             CCccCcEEEEeeCCCCCEEEEEEEECCCCcc
Confidence            8999999999999999999999999987653

>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Thermus thermophilus [TaxId: 274]

Probab=99.15  E-value=1.2e-11  Score=79.76  Aligned_cols=30  Identities=27%  Similarity=0.385  Sum_probs=28.1

Q ss_pred             ccccccEEEEecCcCCceEEEEEEeCcccc
Q psy6164          19 ALPVGAVINCADNTGAKNLFVIAVQGVKDL   48 (64)
Q Consensus        19 giq~~s~lnvADNSGAK~l~iI~V~g~kgr   48 (64)
                      |||.+|+|+|+||||||.++||+|++.+++
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~   30 (122)
T d2j01o1           1 MIQPQTYLEVADNTGARKIMCIRVLKGSNA   30 (122)
T ss_dssp             CCCTTCEEEECSSSSCCEEEEEEECSSTTC
T ss_pred             CCccCcEEEEeeCCCCcEEEEEEEeCCCCC
Confidence            899999999999999999999999987665

>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=7.3e-11  Score=75.98  Aligned_cols=29  Identities=31%  Similarity=0.499  Sum_probs=26.3

Q ss_pred             cccccEEEEecCcCCceEEEEEEeCcccc
Q psy6164          20 LPVGAVINCADNTGAKNLFVIAVQGVKDL   48 (64)
Q Consensus        20 iq~~s~lnvADNSGAK~l~iI~V~g~kgr   48 (64)
                      ||.+|+|+|+||||||.++||+|++...+
T Consensus         1 IQ~~S~l~v~DNSGak~v~cI~vl~~~~~   29 (121)
T d2gyci1           1 IQEQTMLNVADNSGARRVMCIKVLGGSHR   29 (121)
T ss_dssp             CCTTCEEEECSCSSBCEEEEEEETTCCSS
T ss_pred             CCcCCeEEEeeCCCccEEEEEEEeCCCCC
Confidence            79999999999999999999999986544