Psyllid ID: psy6205

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKENN
Secondary Structure (PSIPRED)
cccccEEEEEEEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccEEEcccccHHHHHcHHcccccccccccHHHHHccccccccEEEEccccccccccEEEEccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
HHHcccEEEEEEEccEEEEEEEcccccccEcHHccccccccccccccEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHccccEEEEEEcHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
marypligdvrgIGLFVGVELVtcrkqktpatseaqhvitrppvrmsteapcpdvyrgkypadkypdedlgvKYAQDVQDLIEAMgrngkrpcAFFAESLqscggqiippanyLREVYKHVQVGFGRVGTHWWAFqlqgddiipdivtvgkpmgnghpvAAVITTKEIAKSFQETGVEYFntyggnpvSCAVANAVMEVLETENLREHALDVgnqlhtpkkenn
Flexible Loop (DISEMBL)
marypligdvrgigLFVGVELVTCRkqktpatseaqhvitrppvrmsteapcpdVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHaldvgnqlhtpkkenn
Low Complexity Region (SEG)
MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKENN
Disordered region (IsUnstruct)
***YPLIGDVRGIGLFVGVELVTCRK***************************DVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLRE*****************
Disordered Region (DISOPRED)
*ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE**
Disordered Region (DISEMBL)
MARYPLIGDVRGIGLFVGVELVTCRK**********HVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKENN
Disordered Region (DISPRO)
MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKENN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKENN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q9VU95	494	Alanine--glyoxylate amino	yes	N/A	0.736	0.334	0.575	4e-54
Q6DEB1	509	Ethanolamine-phosphate ph	N/A	N/A	0.732	0.322	0.564	7e-54
Q8BWU8	499	Ethanolamine-phosphate ph	yes	N/A	0.732	0.328	0.558	1e-53
Q8TBG4	499	Ethanolamine-phosphate ph	yes	N/A	0.732	0.328	0.569	2e-53
Q7SY54	492	Ethanolamine-phosphate ph	yes	N/A	0.732	0.333	0.553	5e-52
Q5E9S4	497	Ethanolamine-phosphate ph	yes	N/A	0.732	0.329	0.541	9e-51
Q8IUZ5	450	5-phosphohydroxy-L-lysine	no	N/A	0.732	0.364	0.536	1e-48
Q8R1K4	467	5-phosphohydroxy-L-lysine	no	N/A	0.732	0.351	0.525	1e-48
P91408	467	Alanine--glyoxylate amino	yes	N/A	0.763	0.366	0.463	3e-41
Q9BYV1	514	Alanine--glyoxylate amino	no	N/A	0.714	0.311	0.369	1e-29

>sp|Q9VU95|AGT2L_DROME Alanine--glyoxylate aminotransferase 2-like OS=Drosophila melanogaster GN=CG8745 PE=2 SV=2

 Score =  211 bits (536), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 103/179 (57%), Positives = 127/179 (70%), Gaps = 14/179 (7%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           APCPDVY GK+    YPD D+G  YAQ ++++ +     G+   AF AESLQSCGGQI+P
Sbjct: 180 APCPDVYGGKFTDKMYPDADMGALYAQPIEEICQKQLAKGQGVAAFIAESLQSCGGQILP 239

Query: 110 PANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           PA Y + VY              VQVGFGRVG+H+WAF+ Q  ++IPDIV V KPMGNGH
Sbjct: 240 PAGYFQAVYDAVRSAGGVCIADEVQVGFGRVGSHYWAFETQ--NVIPDIVCVAKPMGNGH 297

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           PV AV+TT EIA++F  TGV YFNTYGGNPVSCA+ANAVM V+E E L++ AL +G+ L
Sbjct: 298 PVGAVVTTPEIAQAFHATGVAYFNTYGGNPVSCAIANAVMRVIEEEGLQQKALVLGDYL 356

Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q6DEB1|AT2L1_XENLA Ethanolamine-phosphate phospho-lyase OS=Xenopus laevis GN=agxt2l1 PE=2 SV=1

 Score =  210 bits (534), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 101/179 (56%), Positives = 133/179 (74%), Gaps = 15/179 (8%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           AP PD YRGKY  D +PD      YA+DV+D+I+   +N ++  AF AES+QSCGGQIIP
Sbjct: 169 APSPDTYRGKYRED-HPDP--ASAYAKDVEDIIQKAHQNKRQIAAFIAESMQSCGGQIIP 225

Query: 110 PANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           PA Y ++V +             VQVGFGRVG H+W+FQLQG+D +PDIVT+GKP+GNGH
Sbjct: 226 PAGYFQKVSEFVHKAGGVFIADEVQVGFGRVGKHFWSFQLQGEDFLPDIVTMGKPIGNGH 285

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           P++ V+TTKEIA++F  TG+EYFNT+GGNPVSCA+  AV++++E E+LR +A  VGN L
Sbjct: 286 PMSCVVTTKEIAEAFGATGMEYFNTFGGNPVSCAIGLAVLDIIEKEDLRGNATTVGNYL 344

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BWU8|AT2L1_MOUSE Ethanolamine-phosphate phospho-lyase OS=Mus musculus GN=Agxt2l1 PE=2 SV=1

 Score =  209 bits (532), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 130/179 (72%), Gaps = 15/179 (8%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           AP PD YRGKY  D    ED    YA +V+ +IE    +G++  AF AES+QSCGGQIIP
Sbjct: 168 APAPDTYRGKYREDH---EDPSTAYADEVKKIIEEAHSSGRKIAAFIAESMQSCGGQIIP 224

Query: 110 PANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           PA Y ++V +H            VQVGFGRVG ++W+FQ+ G+D +PDIVT+GKPMGNGH
Sbjct: 225 PAGYFQKVAEHIHKAGGVFIADEVQVGFGRVGRYFWSFQMYGEDFVPDIVTMGKPMGNGH 284

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           P++ V+TTKEIA++F  +G+EYFNTYGGNPVSCAV  AV++V+E ENL+ +A+ VG  L
Sbjct: 285 PISCVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDVIEKENLQGNAVRVGTYL 343

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8TBG4|AT2L1_HUMAN Ethanolamine-phosphate phospho-lyase OS=Homo sapiens GN=AGXT2L1 PE=1 SV=1

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 102/179 (56%), Positives = 129/179 (72%), Gaps = 15/179 (8%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           AP PD YRGKY  D     D    YA +V+ +IE    +G++  AF AES+QSCGGQIIP
Sbjct: 168 APTPDTYRGKYREDH---ADSASAYADEVKKIIEDAHNSGRKIAAFIAESMQSCGGQIIP 224

Query: 110 PANYLREV--YKH----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           PA Y ++V  Y H          VQVGFGRVG H+W+FQ+ G+D +PDIVT+GKPMGNGH
Sbjct: 225 PAGYFQKVAEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDFVPDIVTMGKPMGNGH 284

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           PVA V+TTKEIA++F  +G+EYFNTYGGNPVSCAV  AV++++E E+L+ +A  VGN L
Sbjct: 285 PVACVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYL 343

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q7SY54|AT2L1_DANRE Ethanolamine-phosphate phospho-lyase OS=Danio rerio GN=agxt2l1 PE=2 SV=1

 Score =  204 bits (518), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 129/179 (72%), Gaps = 15/179 (8%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           A  PD YRGKY  D +PD      YA++V+++IE   + G    AF AESLQSCGGQ+IP
Sbjct: 170 ALSPDTYRGKYRED-HPDP--ATAYAENVKEVIEEAHKKGHEIAAFIAESLQSCGGQVIP 226

Query: 110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           P  Y ++V +HV            QVGFGRVGTH+W FQLQG+D +PDIVT+GKP+GNGH
Sbjct: 227 PMGYFQKVAQHVRNAGGIFIADEVQVGFGRVGTHFWGFQLQGEDFVPDIVTMGKPIGNGH 286

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           P++ VIT++EIA+SF  +G+EYFNT+GGNPVSCA+  AV+ V+E E+L+ +AL VG  L
Sbjct: 287 PMSCVITSREIAESFMSSGMEYFNTFGGNPVSCAIGLAVLNVIEKEDLQGNALHVGGYL 345

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q5E9S4|AT2L1_BOVIN Ethanolamine-phosphate phospho-lyase OS=Bos taurus GN=AGXT2L1 PE=2 SV=1

 Score =  199 bits (507), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 97/179 (54%), Positives = 128/179 (71%), Gaps = 15/179 (8%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           AP PD YRGKY  D     D    YA +V+ +I+    +G++  AF AES+QSCGGQIIP
Sbjct: 168 APAPDTYRGKYREDHV---DPASAYADEVKKIIDEAHNSGRKIAAFIAESMQSCGGQIIP 224

Query: 110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           PA Y ++V ++V            QVGFGRVG H+W+FQ+ G+D +PDIVT+GKPMGNGH
Sbjct: 225 PAGYFQKVAEYVRGAGGVFIADEVQVGFGRVGKHFWSFQMFGEDFVPDIVTMGKPMGNGH 284

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           P+A V+TTKEIA++F  +G+EYFNTYGGNPVS AV  AV++V++ E+L+ +A  VGN L
Sbjct: 285 PMACVVTTKEIAEAFSASGMEYFNTYGGNPVSSAVGLAVLDVIKNEDLQGNATRVGNYL 343

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8IUZ5|AT2L2_HUMAN 5-phosphohydroxy-L-lysine phospho-lyase OS=Homo sapiens GN=AGXT2L2 PE=1 SV=1

 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/179 (53%), Positives = 124/179 (69%), Gaps = 15/179 (8%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           AP PD YRG Y  D +P+  +   YA +V+ ++ +    G++  AFFAESL S GGQIIP
Sbjct: 168 APLPDTYRGPYRED-HPNPAMA--YANEVKRVVSSAQEKGRKIAAFFAESLPSVGGQIIP 224

Query: 110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           PA Y  +V +H+            QVGFGRVG H+WAFQLQG D +PDIVT+GK +GNGH
Sbjct: 225 PAGYFSQVAEHIRKAGGVFVADEIQVGFGRVGKHFWAFQLQGKDFVPDIVTMGKSIGNGH 284

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           PVA V  T+ +A++F+ TGVEYFNT+GG+PVSCAV  AV+ VLE E L++HA  VG+ L
Sbjct: 285 PVACVAATQPVARAFEATGVEYFNTFGGSPVSCAVGLAVLNVLEKEQLQDHATSVGSFL 343

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8R1K4|AT2L2_MOUSE 5-phosphohydroxy-L-lysine phospho-lyase OS=Mus musculus GN=Agxt2l2 PE=2 SV=1

 Score =  192 bits (488), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/179 (52%), Positives = 127/179 (70%), Gaps = 15/179 (8%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           AP PD YRG Y  D +P+      YA +V+ +I +  + G++  AFFAESL S  GQIIP
Sbjct: 168 APLPDTYRGPYRED-HPNP--AEAYANEVKHVISSAQQKGRKIAAFFAESLPSVSGQIIP 224

Query: 110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           PA Y  +V +H+            QVGFGR+G H+WAFQL+G+D +PDIVT+GK +GNGH
Sbjct: 225 PAGYFSQVAEHIHRAGGLFVADEIQVGFGRIGKHFWAFQLEGEDFVPDIVTMGKSIGNGH 284

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           PVA + TT+ ++++F+ TGVEYFNT+GGNPVSCAV  AV++VL+TE L+ HA +VG+ L
Sbjct: 285 PVACMATTQAVSRAFEATGVEYFNTFGGNPVSCAVGLAVLDVLKTEQLQAHATNVGSFL 343

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|P91408|AGT2L_CAEEL Alanine--glyoxylate aminotransferase 2-like OS=Caenorhabditis elegans GN=T01B11.2 PE=2 SV=1

 Score =  168 bits (425), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 122/192 (63%), Gaps = 21/192 (10%)

Query: 50  APCPDVYRGKY--PADKYPDED----LGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSC 103
           APCPDV+RGK+    ++  +ED     G +Y+ DV+ ++  +        A+FAE+LQSC
Sbjct: 188 APCPDVFRGKHRLADNELTNEDKLYAAGKQYSDDVKSILNDVESRQCGVAAYFAEALQSC 247

Query: 104 GGQIIPPANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGK 151
           GGQ+IPP +Y ++V  HV            Q GFGR+G  +WA QL  D  +PDIVT+GK
Sbjct: 248 GGQVIPPKDYFKDVATHVRNHGGLMIIDEVQTGFGRIGRKYWAHQLYDDGFLPDIVTMGK 307

Query: 152 PMGNGHPVAAVITTKEIAKSF-QETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHAL 210
           PMGNG PV+AV T KEIA +   E G  YFNTYGGNPV+CA   +VM+V++ ENL EH+ 
Sbjct: 308 PMGNGFPVSAVATRKEIADALGGEVG--YFNTYGGNPVACAAVISVMKVVKDENLLEHSQ 365

Query: 211 DVGNQLHTPKKE 222
            +G +L    ++
Sbjct: 366 QMGEKLEVALRD 377

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9BYV1|AGT2_HUMAN Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens GN=AGXT2 PE=1 SV=1

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 109/192 (56%), Gaps = 32/192 (16%)

Query: 52  CPDVYRGKYPADKYPDEDLGV---------------KYAQDVQDLIEAMGRNGKRPCAFF 96
           CPDV+RG +      D  +                 +Y +  +D +       K    FF
Sbjct: 228 CPDVFRGPWGGSHCRDSPVQTIRKCSCAPDCCQAKDQYIEQFKDTLST--SVAKSIAGFF 285

Query: 97  AESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIP 144
           AE +Q   G +  P  +L+E ++             VQ GFGR+G+H+W FQ    D++P
Sbjct: 286 AEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFWGFQTH--DVLP 343

Query: 145 DIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETEN 204
           DIVT+ K +GNG P+AAVITT EIAKS  +  +++FNT+GGNP++CA+ +AV+EV++ EN
Sbjct: 344 DIVTMAKGIGNGFPMAAVITTPEIAKSLAKC-LQHFNTFGGNPMACAIGSAVLEVIKEEN 402

Query: 205 LREHALDVGNQL 216
           L+E++ +VG  +
Sbjct: 403 LQENSQEVGTYM 414

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
345488761	485	PREDICTED: alanine--glyoxylate aminotran	0.772	0.356	0.675	5e-68
328779867	536	PREDICTED: alanine--glyoxylate aminotran	0.754	0.315	0.685	4e-67
380011207	483	PREDICTED: alanine--glyoxylate aminotran	0.754	0.349	0.685	8e-67
350419709	485	PREDICTED: alanine--glyoxylate aminotran	0.754	0.348	0.685	4e-66
307174361	483	Alanine--glyoxylate aminotransferase 2-l	0.745	0.345	0.681	4e-66
340713065	485	PREDICTED: alanine--glyoxylate aminotran	0.745	0.344	0.681	9e-66
242012375	440	alanine-glyoxylate aminotransferase, put	0.745	0.379	0.681	9e-66
383855028	484	PREDICTED: alanine--glyoxylate aminotran	0.754	0.349	0.674	3e-65
322778710	498	hypothetical protein SINV_00178 [Solenop	0.772	0.347	0.659	4e-65
307208884	2105	Vitellogenin [Harpegnathos saltator]	0.745	0.079	0.659	1e-64

>gi|345488761|ref|XP_003425979.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like 1-like isoform 2 [Nasonia vitripennis] gi|345488763|ref|XP_001605716.2| PREDICTED: alanine--glyoxylate aminotransferase 2-like 1-like isoform 1 [Nasonia vitripennis]

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 125/185 (67%), Positives = 146/185 (78%), Gaps = 12/185 (6%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           APCPDVYRGKY  D YP+EDLGVKYA DV+ + E +   G+   AF AESL S GGQI+P
Sbjct: 171 APCPDVYRGKYRDDCYPNEDLGVKYADDVKQICEEVKAKGRGVSAFIAESLMSVGGQILP 230

Query: 110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           P NY R VYKHV            QVGFGRVG+H WAFQL G+D++PDIVTVGKPMGNGH
Sbjct: 231 PDNYFRNVYKHVRAAGGVCIADEVQVGFGRVGSHMWAFQLYGEDLVPDIVTVGKPMGNGH 290

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
           P+AAVITT+EIA+SF++TG+EYFNTYGGNPVSCAVANAVMEV+E +NL+EHAL VGN L 
Sbjct: 291 PIAAVITTQEIARSFRDTGIEYFNTYGGNPVSCAVANAVMEVIERDNLQEHALKVGNHLI 350

Query: 218 TPKKE 222
           +  K+
Sbjct: 351 SELKK 355

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779867|ref|XP_392348.2| PREDICTED: alanine--glyoxylate aminotransferase 2-like [Apis mellifera]

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 124/181 (68%), Positives = 140/181 (77%), Gaps = 12/181 (6%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           APCPDVYRGKY    YP EDLGVKYA DV+D+ + +   GK  CAF AESL S GGQI+P
Sbjct: 226 APCPDVYRGKYREIDYPKEDLGVKYANDVKDICQNLKNQGKGVCAFIAESLMSVGGQILP 285

Query: 110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           P NY R  YK+V            QVGFGRVG+H WAFQL G+D+IPDIVTVGKPMGNGH
Sbjct: 286 PQNYFRNAYKYVREVGGVCIADEVQVGFGRVGSHMWAFQLYGEDVIPDIVTVGKPMGNGH 345

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
           PVAAVITT  IA+SF+ +G+EYFNTYGGNPVSCA+ANAVMEV+E ENL+EHAL VGN L 
Sbjct: 346 PVAAVITTPAIAESFKNSGIEYFNTYGGNPVSCAIANAVMEVIERENLQEHALKVGNHLM 405

Query: 218 T 218
           T
Sbjct: 406 T 406

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011207|ref|XP_003689702.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like [Apis florea]

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 124/181 (68%), Positives = 140/181 (77%), Gaps = 12/181 (6%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           APCPDVYRGKY    YP EDLGVKYA DV+D+ + +   GK  CAF AESL S GGQI+P
Sbjct: 172 APCPDVYRGKYREIDYPKEDLGVKYANDVKDICQNLKNQGKGVCAFIAESLMSVGGQILP 231

Query: 110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           P NY R  YK+V            QVGFGRVG+H WAFQL G+D+IPDIVTVGKPMGNGH
Sbjct: 232 PQNYFRNAYKYVREVGGVCIADEVQVGFGRVGSHMWAFQLYGEDVIPDIVTVGKPMGNGH 291

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
           PVAAVITT  IA+SF+ +G+EYFNTYGGNPVSCA+ANAVMEV+E ENL+EHAL VGN L 
Sbjct: 292 PVAAVITTPAIAESFKNSGIEYFNTYGGNPVSCAIANAVMEVIERENLQEHALKVGNHLM 351

Query: 218 T 218
           T
Sbjct: 352 T 352

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419709|ref|XP_003492276.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like [Bombus impatiens]

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 124/181 (68%), Positives = 141/181 (77%), Gaps = 12/181 (6%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           APCPDVYRGKY    +P+EDLGVKYA DV+++ + +   GK  CAF AESL S GGQI+P
Sbjct: 172 APCPDVYRGKYRDIDHPNEDLGVKYADDVKNICQNLKNEGKGVCAFIAESLMSVGGQILP 231

Query: 110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           P NY R VYKHV            QVGFGRVG+H WAFQL G+D IPDIVTVGKPMGNGH
Sbjct: 232 PQNYFRNVYKHVREAGGVCIADEVQVGFGRVGSHMWAFQLYGEDAIPDIVTVGKPMGNGH 291

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
           PVAAVITT  IA SF++TG+EYFNTYGGNPVSCA+ANAVMEV+E ENL+E+AL VGN L 
Sbjct: 292 PVAAVITTPAIAGSFKDTGIEYFNTYGGNPVSCAIANAVMEVIERENLQENALKVGNHLM 351

Query: 218 T 218
           T
Sbjct: 352 T 352

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174361|gb|EFN64903.1| Alanine--glyoxylate aminotransferase 2-like [Camponotus floridanus]

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 122/179 (68%), Positives = 143/179 (79%), Gaps = 12/179 (6%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           A CPDVYRGKY ++ Y DEDLGVKYA+DV+ + + +   G+  CA+ AESL S GGQI+P
Sbjct: 171 ASCPDVYRGKYRSNDYIDEDLGVKYAEDVKQICDNIKAQGRGVCAYIAESLISVGGQILP 230

Query: 110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           P NY R VYKHV            QVGFGRVGTH WAFQL G+D+IPDIVT+GKPMGNGH
Sbjct: 231 PENYFRNVYKHVREAGGVCIADEVQVGFGRVGTHMWAFQLYGEDVIPDIVTLGKPMGNGH 290

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           PVAAVITT EIA++F++TG+EYFNTYGGNPVSCAVANAVMEV+E ENL+E+AL VGN L
Sbjct: 291 PVAAVITTPEIARNFRDTGIEYFNTYGGNPVSCAVANAVMEVIERENLQENALQVGNHL 349

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713065|ref|XP_003395072.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like [Bombus terrestris]

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 122/179 (68%), Positives = 140/179 (78%), Gaps = 12/179 (6%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           APCPDVYRGKY    +P+EDLGVKYA DV+++ + +   GK  CAF AESL S GGQI+P
Sbjct: 172 APCPDVYRGKYRDIDHPNEDLGVKYADDVKNICQNLKNEGKGVCAFIAESLMSVGGQILP 231

Query: 110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           P NY R  YKHV            QVGFGRVG+H WAFQL G+D+IPDIVTVGKPMGNGH
Sbjct: 232 PQNYFRNAYKHVREAGGVCIADEVQVGFGRVGSHMWAFQLYGEDVIPDIVTVGKPMGNGH 291

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           PVAAVITT  IA SF++TG+EYFNTYGGNPVSCA+ANAVMEV+E ENL+E+AL VGN L
Sbjct: 292 PVAAVITTPAIAGSFKDTGIEYFNTYGGNPVSCAIANAVMEVIERENLQENALKVGNHL 350

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012375|ref|XP_002426908.1| alanine-glyoxylate aminotransferase, putative [Pediculus humanus corporis] gi|212511137|gb|EEB14170.1| alanine-glyoxylate aminotransferase, putative [Pediculus humanus corporis]

 Score =  255 bits (651), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 122/179 (68%), Positives = 136/179 (75%), Gaps = 12/179 (6%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           APCPD YRGKY    YP  DLG KYA D++++      NG+  CAF  ESLQSCGGQIIP
Sbjct: 167 APCPDTYRGKYRTVDYPGIDLGEKYANDIREICLKARSNGRSICAFIGESLQSCGGQIIP 226

Query: 110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           P NYLR VYKHV            QVGFGRVG+HWW FQLQGDD+IPDIVT+GKPMGNGH
Sbjct: 227 PKNYLRNVYKHVKEAGGVCIADEVQVGFGRVGSHWWGFQLQGDDVIPDIVTLGKPMGNGH 286

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           PVAAV+TT+EIA SF+  GVEYFNTYGGNPVSCAVA AVM V+E ENLRE+A  VG+ L
Sbjct: 287 PVAAVVTTQEIANSFKINGVEYFNTYGGNPVSCAVALAVMNVIEKENLRENATQVGDYL 345

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855028|ref|XP_003703021.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like [Megachile rotundata]

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/181 (67%), Positives = 139/181 (76%), Gaps = 12/181 (6%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           APCPDVYRGKY    YP EDLGVKYA DV+++ + +   GK  CAF AESL S GGQI+P
Sbjct: 172 APCPDVYRGKYRETDYPGEDLGVKYANDVKNICQNLKNQGKGVCAFIAESLMSVGGQILP 231

Query: 110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           P NY R VYKHV            QVGFGRVG+H WAFQL G+D+IPDIVTVGKPMGNGH
Sbjct: 232 PENYFRNVYKHVREAGGVCIADEVQVGFGRVGSHMWAFQLYGEDVIPDIVTVGKPMGNGH 291

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
           PVAAVIT   IA SF++TG+EYFNTYGGNPVSCA+ANAVMEV+E ENL+E+AL VG  L 
Sbjct: 292 PVAAVITNPTIAGSFKDTGIEYFNTYGGNPVSCAIANAVMEVIERENLQENALKVGKYLM 351

Query: 218 T 218
           +
Sbjct: 352 S 352

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322778710|gb|EFZ09126.1| hypothetical protein SINV_00178 [Solenopsis invicta]

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 122/185 (65%), Positives = 143/185 (77%), Gaps = 12/185 (6%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           APCPDVYRGKY A  Y DEDLGVKYA+DV+ + + +   G+  CA+ AESL S GGQI+P
Sbjct: 186 APCPDVYRGKYRAINYADEDLGVKYAEDVKQICKDIKAEGRGVCAYIAESLISVGGQILP 245

Query: 110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           P NY + VY+HV            QVGFGRVGTH WAFQL G+D++PDIVT+GKPMGNGH
Sbjct: 246 PQNYFKNVYRHVREAGGVCIADEVQVGFGRVGTHMWAFQLYGEDVVPDIVTMGKPMGNGH 305

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
           PVAAVITT EIA SF++TG+EYFNTYGGNPVSCAVANAVMEV+E E L+E+AL VGN L 
Sbjct: 306 PVAAVITTPEIAGSFRDTGIEYFNTYGGNPVSCAVANAVMEVIEREGLQENALKVGNHLM 365

Query: 218 TPKKE 222
              K+
Sbjct: 366 AELKK 370

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208884|gb|EFN86099.1| Vitellogenin [Harpegnathos saltator]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 118/179 (65%), Positives = 139/179 (77%), Gaps = 12/179 (6%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
           APCPDVYRGKY AD YPDEDLG+KYA+DV ++ + +   G+  CA+ AES  S GGQIIP
Sbjct: 11  APCPDVYRGKYRADDYPDEDLGIKYAKDVGEICQNIEATGRGLCAYIAESFVSVGGQIIP 70

Query: 110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           P NY R  +KHV            QVGFGRVGTH WAFQ+ G+D+IPDIVTVGKPMGNGH
Sbjct: 71  PQNYFRNAFKHVREAGGVCIVDEVQVGFGRVGTHMWAFQVYGEDVIPDIVTVGKPMGNGH 130

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           PVAAV+TT EIA SF+ +G+EYFNTYGGNPVSCA+ANAVMEV+E ENL ++A  VG+ L
Sbjct: 131 PVAAVVTTPEIASSFRASGIEYFNTYGGNPVSCAIANAVMEVIERENLLDNASKVGSHL 189

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
FB|FBgn0036381	494	CG8745 [Drosophila melanogaste	0.736	0.334	0.575	6.5e-51
MGI|MGI:1919010	499	Agxt2l1 "alanine-glyoxylate am	0.732	0.328	0.558	7.4e-50
UNIPROTKB|E1C8Q2	501	AGXT2L1 "Uncharacterized prote	0.732	0.327	0.553	7.4e-50
UNIPROTKB|E7ENR6	459	AGXT2L1 "Ethanolamine-phosphat	0.732	0.357	0.569	9.5e-50
UNIPROTKB|Q8TBG4	499	AGXT2L1 "Ethanolamine-phosphat	0.732	0.328	0.569	9.5e-50
UNIPROTKB|H9L0I3	355	H9L0I3 "Uncharacterized protei	0.732	0.461	0.575	1.5e-49
UNIPROTKB|H9L0I4	362	H9L0I4 "Uncharacterized protei	0.732	0.453	0.575	1.5e-49
UNIPROTKB|F1NIA8	453	AGXT2L2 "Uncharacterized prote	0.732	0.362	0.575	2.5e-49
UNIPROTKB|E2R2V9	494	AGXT2L1 "Uncharacterized prote	0.732	0.331	0.558	1.1e-48
UNIPROTKB|F6XN94	397	AGXT2L1 "Uncharacterized prote	0.732	0.413	0.558	1.1e-48

FB|FBgn0036381 CG8745 [Drosophila melanogaster (taxid:7227)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 103/179 (57%), Positives = 127/179 (70%)

Query:    50 APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
             APCPDVY GK+    YPD D+G  YAQ ++++ +     G+   AF AESLQSCGGQI+P
Sbjct:   180 APCPDVYGGKFTDKMYPDADMGALYAQPIEEICQKQLAKGQGVAAFIAESLQSCGGQILP 239

Query:   110 PANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
             PA Y + VY              VQVGFGRVG+H+WAF+ Q  ++IPDIV V KPMGNGH
Sbjct:   240 PAGYFQAVYDAVRSAGGVCIADEVQVGFGRVGSHYWAFETQ--NVIPDIVCVAKPMGNGH 297

Query:   158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
             PV AV+TT EIA++F  TGV YFNTYGGNPVSCA+ANAVM V+E E L++ AL +G+ L
Sbjct:   298 PVGAVVTTPEIAQAFHATGVAYFNTYGGNPVSCAIANAVMRVIEEEGLQQKALVLGDYL 356

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0035094 "response to nicotine" evidence=IEP

GO:0019544 "arginine catabolic process to glutamate" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=ISS

MGI|MGI:1919010 Agxt2l1 "alanine-glyoxylate aminotransferase 2-like 1" [Mus musculus (taxid:10090)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 100/179 (55%), Positives = 130/179 (72%)

Query:    50 APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
             AP PD YRGKY  D    ED    YA +V+ +IE    +G++  AF AES+QSCGGQIIP
Sbjct:   168 APAPDTYRGKYREDH---EDPSTAYADEVKKIIEEAHSSGRKIAAFIAESMQSCGGQIIP 224

Query:   110 PANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
             PA Y ++V +H            VQVGFGRVG ++W+FQ+ G+D +PDIVT+GKPMGNGH
Sbjct:   225 PAGYFQKVAEHIHKAGGVFIADEVQVGFGRVGRYFWSFQMYGEDFVPDIVTMGKPMGNGH 284

Query:   158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
             P++ V+TTKEIA++F  +G+EYFNTYGGNPVSCAV  AV++V+E ENL+ +A+ VG  L
Sbjct:   285 PISCVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDVIEKENLQGNAVRVGTYL 343

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008483 "transaminase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0050459 "ethanolamine-phosphate phospho-lyase activity" evidence=IEA

UNIPROTKB|E1C8Q2 AGXT2L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 99/179 (55%), Positives = 134/179 (74%)

Query:    50 APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
             AP PD+YRGKY  D +PD      YA++V+ +IE   +NG++  AF AES+QSCGGQ+IP
Sbjct:   169 APSPDIYRGKYRED-HPDP--ASAYAEEVKKIIEETQKNGRKIAAFIAESMQSCGGQVIP 225

Query:   110 PANYLREV--YKH----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
             P  Y ++V  Y H          VQVGFGRVG H+WAFQLQG+D +PDIVT+GKP+GNGH
Sbjct:   226 PVGYFQKVAEYVHAAGGVFIADEVQVGFGRVGKHFWAFQLQGEDFVPDIVTMGKPIGNGH 285

Query:   158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
             P++ V+TT+EIA+ F  +G+EYFNT+GGNPVSCA+  AV++V+E E+L+ +A+ VG+ L
Sbjct:   286 PMSCVVTTREIAEKFGASGLEYFNTFGGNPVSCAIGLAVLDVIEKEDLQGNAMRVGSYL 344

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|E7ENR6 AGXT2L1 "Ethanolamine-phosphate phospho-lyase" [Homo sapiens (taxid:9606)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 102/179 (56%), Positives = 129/179 (72%)

Query:    50 APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
             AP PD YRGKY  D     D    YA +V+ +IE    +G++  AF AES+QSCGGQIIP
Sbjct:   128 APTPDTYRGKYREDH---ADSASAYADEVKKIIEDAHNSGRKIAAFIAESMQSCGGQIIP 184

Query:   110 PANYLREV--YKH----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
             PA Y ++V  Y H          VQVGFGRVG H+W+FQ+ G+D +PDIVT+GKPMGNGH
Sbjct:   185 PAGYFQKVAEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDFVPDIVTMGKPMGNGH 244

Query:   158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
             PVA V+TTKEIA++F  +G+EYFNTYGGNPVSCAV  AV++++E E+L+ +A  VGN L
Sbjct:   245 PVACVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYL 303

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q8TBG4 AGXT2L1 "Ethanolamine-phosphate phospho-lyase" [Homo sapiens (taxid:9606)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 102/179 (56%), Positives = 129/179 (72%)

Query:    50 APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
             AP PD YRGKY  D     D    YA +V+ +IE    +G++  AF AES+QSCGGQIIP
Sbjct:   168 APTPDTYRGKYREDH---ADSASAYADEVKKIIEDAHNSGRKIAAFIAESMQSCGGQIIP 224

Query:   110 PANYLREV--YKH----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
             PA Y ++V  Y H          VQVGFGRVG H+W+FQ+ G+D +PDIVT+GKPMGNGH
Sbjct:   225 PAGYFQKVAEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDFVPDIVTMGKPMGNGH 284

Query:   158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
             PVA V+TTKEIA++F  +G+EYFNTYGGNPVSCAV  AV++++E E+L+ +A  VGN L
Sbjct:   285 PVACVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLAVLDIIENEDLQGNAKRVGNYL 343

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0050459 "ethanolamine-phosphate phospho-lyase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008453 "alanine-glyoxylate transaminase activity" evidence=NAS

GO:0006520 "cellular amino acid metabolic process" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|H9L0I3 H9L0I3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 103/179 (57%), Positives = 128/179 (71%)

Query:    50 APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
             AP PD YRG Y  D    ED    YA +V+++IE   + G++  AFFAESL S GGQIIP
Sbjct:   162 APVPDTYRGLYREDH---EDPATAYATEVKNIIERAHKKGRKIAAFFAESLPSVGGQIIP 218

Query:   110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
             P  Y ++V +HV            QVGFGRVG H+WAFQLQG++ IPDIVT+GKP+GNGH
Sbjct:   219 PEGYFQKVAEHVHKAGGVFVADEIQVGFGRVGKHFWAFQLQGEEFIPDIVTMGKPIGNGH 278

Query:   158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
             P+A V TTKEIA++F  TGVEYFNT+GGNPVSCA+  AV++V+E E L+ HA +VGN L
Sbjct:   279 PIACVATTKEIAEAFAATGVEYFNTFGGNPVSCAIGLAVLDVIEKEQLQIHATEVGNFL 337

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|H9L0I4 H9L0I4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 103/179 (57%), Positives = 128/179 (71%)

Query:    50 APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
             AP PD YRG Y  D    ED    YA +V+++IE   + G++  AFFAESL S GGQIIP
Sbjct:   169 APVPDTYRGLYREDH---EDPATAYATEVKNIIERAHKKGRKIAAFFAESLPSVGGQIIP 225

Query:   110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
             P  Y ++V +HV            QVGFGRVG H+WAFQLQG++ IPDIVT+GKP+GNGH
Sbjct:   226 PEGYFQKVAEHVHKAGGVFVADEIQVGFGRVGKHFWAFQLQGEEFIPDIVTMGKPIGNGH 285

Query:   158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
             P+A V TTKEIA++F  TGVEYFNT+GGNPVSCA+  AV++V+E E L+ HA +VGN L
Sbjct:   286 PIACVATTKEIAEAFAATGVEYFNTFGGNPVSCAIGLAVLDVIEKEQLQIHATEVGNFL 344

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|F1NIA8 AGXT2L2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 103/179 (57%), Positives = 127/179 (70%)

Query:    50 APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
             AP PD YRG Y  D    ED    YA +V+++IE   + G+   AFFAESL S GGQIIP
Sbjct:   170 APVPDTYRGLYREDH---EDPATAYATEVKNIIERAHKKGREIAAFFAESLPSVGGQIIP 226

Query:   110 PANYLREVYKHV------------QVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
             P  Y ++V +HV            QVGFGRVG H+WAFQLQG++ IPDIVT+GKP+GNGH
Sbjct:   227 PEGYFQKVAEHVHKAGGVFVADEIQVGFGRVGKHFWAFQLQGEEFIPDIVTMGKPIGNGH 286

Query:   158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
             P+A V TTKEIA++F  TGVEYFNT+GGNPVSCA+  AV++V+E E L+ HA +VGN L
Sbjct:   287 PIACVATTKEIAEAFAATGVEYFNTFGGNPVSCAIGLAVLDVIEKEQLQIHATEVGNFL 345

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|E2R2V9 AGXT2L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 100/179 (55%), Positives = 129/179 (72%)

Query:    50 APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
             AP PD YRGKY  D     D    YA +V+++IE    +G++  AF AES+QSCGGQIIP
Sbjct:   168 APAPDTYRGKYREDH---ADPANAYADEVKEIIEKAHNSGRKIAAFIAESMQSCGGQIIP 224

Query:   110 PANYLREV--YKH----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
             PA Y ++V  Y H          VQVGFGRVG H+W+FQ+QG+D +PDIVT+GKPMGNGH
Sbjct:   225 PAGYFQKVAEYVHRAGGVFIADEVQVGFGRVGKHFWSFQMQGEDFVPDIVTMGKPMGNGH 284

Query:   158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
             P+A V+TTKEIA++F  +G+EYFNTYGGNPVS A+  AV+ V+E E+L+ +A  VG+ L
Sbjct:   285 PMACVVTTKEIAEAFSSSGMEYFNTYGGNPVSSAIGLAVLNVIENEDLQGNATRVGDYL 343

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

UNIPROTKB|F6XN94 AGXT2L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 100/179 (55%), Positives = 129/179 (72%)

Query:    50 APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
             AP PD YRGKY  D     D    YA +V+++IE    +G++  AF AES+QSCGGQIIP
Sbjct:    66 APAPDTYRGKYREDH---ADPANAYADEVKEIIEKAHNSGRKIAAFIAESMQSCGGQIIP 122

Query:   110 PANYLREV--YKH----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
             PA Y ++V  Y H          VQVGFGRVG H+W+FQ+QG+D +PDIVT+GKPMGNGH
Sbjct:   123 PAGYFQKVAEYVHRAGGVFIADEVQVGFGRVGKHFWSFQMQGEDFVPDIVTMGKPMGNGH 182

Query:   158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
             P+A V+TTKEIA++F  +G+EYFNTYGGNPVS A+  AV+ V+E E+L+ +A  VG+ L
Sbjct:   183 PMACVVTTKEIAEAFSSSGMEYFNTYGGNPVSSAIGLAVLNVIENEDLQGNATRVGDYL 241

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5E9S4	AT2L1_BOVIN	2, ., 6, ., 1, ., -	0.5418	0.7321	0.3299	yes	N/A
Q7SY54	AT2L1_DANRE	2, ., 6, ., 1, ., -	0.5530	0.7321	0.3333	yes	N/A
Q9VU95	AGT2L_DROME	2, ., 6, ., 1, ., -	0.5754	0.7366	0.3340	yes	N/A
Q8TBG4	AT2L1_HUMAN	2, ., 6, ., 1, ., -	0.5698	0.7321	0.3286	yes	N/A
Q8BWU8	AT2L1_MOUSE	2, ., 6, ., 1, ., -	0.5586	0.7321	0.3286	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	224
PRK06148	1013	PRK06148, PRK06148, hypothetical protein; Provisio	1e-76
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	2e-56
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	5e-51
PRK06149	972	PRK06149, PRK06149, hypothetical protein; Provisio	1e-44
PRK02627	396	PRK02627, PRK02627, acetylornithine aminotransfera	4e-34
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	6e-34
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	2e-33
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	4e-33
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	4e-26
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	1e-25
PRK08360	443	PRK08360, PRK08360, 4-aminobutyrate aminotransfera	2e-25
TIGR01885	401	TIGR01885, Orn_aminotrans, ornithine aminotransfer	4e-25
PRK03244	398	PRK03244, argD, acetylornithine aminotransferase;	2e-23
PRK07678	451	PRK07678, PRK07678, aminotransferase; Validated	1e-22
PLN02624	474	PLN02624, PLN02624, ornithine-delta-aminotransfera	2e-22
TIGR00508	417	TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon	2e-22
PRK07480	456	PRK07480, PRK07480, putative aminotransferase; Val	4e-22
PRK05093	403	PRK05093, argD, bifunctional N-succinyldiaminopime	5e-22
PTZ00125	400	PTZ00125, PTZ00125, ornithine aminotransferase-lik	7e-22
PRK11522	459	PRK11522, PRK11522, putrescine--2-oxoglutarate ami	3e-21
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	4e-21
PRK07036	466	PRK07036, PRK07036, hypothetical protein; Provisio	5e-21
PRK08593	445	PRK08593, PRK08593, 4-aminobutyrate aminotransfera	2e-20
PRK04073	396	PRK04073, rocD, ornithine--oxo-acid transaminase;	2e-20
TIGR03246	397	TIGR03246, arg_catab_astC, succinylornithine trans	3e-20
PRK05964	423	PRK05964, PRK05964, adenosylmethionine--8-amino-7-	1e-19
PRK06916	460	PRK06916, PRK06916, adenosylmethionine--8-amino-7-	4e-19
PRK01278	389	PRK01278, argD, acetylornithine transaminase prote	7e-19
PRK06541	460	PRK06541, PRK06541, hypothetical protein; Provisio	2e-18
PRK06918	451	PRK06918, PRK06918, 4-aminobutyrate aminotransfera	1e-17
PRK13360	442	PRK13360, PRK13360, omega amino acid--pyruvate tra	1e-17
PRK07495	425	PRK07495, PRK07495, 4-aminobutyrate aminotransfera	1e-16
PRK09221	445	PRK09221, PRK09221, beta alanine--pyruvate transam	1e-16
PRK07481	449	PRK07481, PRK07481, hypothetical protein; Provisio	2e-16
PRK00854	401	PRK00854, rocD, ornithine--oxo-acid transaminase;	5e-16
TIGR03372	442	TIGR03372, putres_am_tran, putrescine aminotransfe	5e-16
TIGR00700	420	TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf	6e-16
PRK12381	406	PRK12381, PRK12381, bifunctional succinylornithine	6e-16
PLN00144	382	PLN00144, PLN00144, acetylornithine transaminase	6e-16
PRK02936	377	PRK02936, argD, acetylornithine aminotransferase;	1e-15
PRK06058	443	PRK06058, PRK06058, 4-aminobutyrate aminotransfera	2e-15
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	3e-15
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	3e-15
PLN02760	504	PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans	3e-15
PRK06917	447	PRK06917, PRK06917, hypothetical protein; Provisio	4e-15
PRK06105	460	PRK06105, PRK06105, aminotransferase; Provisional	4e-15
PRK07483	443	PRK07483, PRK07483, hypothetical protein; Provisio	2e-14
PRK03715	395	PRK03715, argD, acetylornithine transaminase prote	7e-14
PRK08088	425	PRK08088, PRK08088, 4-aminobutyrate aminotransfera	1e-13
PRK12403	460	PRK12403, PRK12403, putative aminotransferase; Pro	3e-13
PRK07482	461	PRK07482, PRK07482, hypothetical protein; Provisio	4e-13
PRK06148	1013	PRK06148, PRK06148, hypothetical protein; Provisio	5e-13
PRK06062	451	PRK06062, PRK06062, hypothetical protein; Provisio	2e-12
PRK04260	375	PRK04260, PRK04260, acetylornithine aminotransfera	2e-12
PRK06938	464	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat	3e-12
PRK06777	421	PRK06777, PRK06777, 4-aminobutyrate aminotransfera	5e-12
PRK05965	459	PRK05965, PRK05965, hypothetical protein; Provisio	9e-12
TIGR00709	442	TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase	1e-11
PRK07030	466	PRK07030, PRK07030, adenosylmethionine--8-amino-7-	8e-11
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	1e-10
PRK09792	421	PRK09792, PRK09792, 4-aminobutyrate transaminase;	2e-10
COG0001	432	COG0001, HemL, Glutamate-1-semialdehyde aminotrans	4e-10
PRK04612	408	PRK04612, argD, acetylornithine transaminase prote	4e-10
PRK07986	428	PRK07986, PRK07986, adenosylmethionine--8-amino-7-	5e-10
PRK08742	472	PRK08742, PRK08742, adenosylmethionine--8-amino-7-	5e-10
PRK08297	443	PRK08297, PRK08297, L-lysine aminotransferase; Pro	6e-09
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	1e-08
PRK06931	459	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat	2e-08
PRK08360	443	PRK08360, PRK08360, 4-aminobutyrate aminotransfera	1e-07
PRK06173	429	PRK06173, PRK06173, adenosylmethionine--8-amino-7-	1e-07
PRK04013	364	PRK04013, argD, acetylornithine/acetyl-lysine amin	1e-07
PRK05630	422	PRK05630, PRK05630, adenosylmethionine--8-amino-7-	4e-07
TIGR03251	431	TIGR03251, LAT_fam, L-lysine 6-transaminase	4e-07
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	2e-06
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	4e-06
PRK06149	972	PRK06149, PRK06149, hypothetical protein; Provisio	1e-05
PRK08593	445	PRK08593, PRK08593, 4-aminobutyrate aminotransfera	1e-05
PRK06917	447	PRK06917, PRK06917, hypothetical protein; Provisio	2e-05
TIGR00713	423	TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin	2e-05
PRK06209	431	PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a	2e-05
PRK07481	449	PRK07481, PRK07481, hypothetical protein; Provisio	4e-05
PRK06062	451	PRK06062, PRK06062, hypothetical protein; Provisio	5e-05
PRK07483	443	PRK07483, PRK07483, hypothetical protein; Provisio	6e-05
PRK07678	451	PRK07678, PRK07678, aminotransferase; Validated	1e-04
PRK06943	453	PRK06943, PRK06943, adenosylmethionine--8-amino-7-	2e-04
PRK00615	433	PRK00615, PRK00615, glutamate-1-semialdehyde amino	2e-04
PRK00062	426	PRK00062, PRK00062, glutamate-1-semialdehyde amino	4e-04
PRK12389	428	PRK12389, PRK12389, glutamate-1-semialdehyde amino	4e-04
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	5e-04
TIGR02407	412	TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu	6e-04
TIGR00699	464	TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran	6e-04
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	0.001
PRK06105	460	PRK06105, PRK06105, aminotransferase; Provisional	0.001
PRK09264	425	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat	0.001

>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional

 Score =  248 bits (635), Expect = 1e-76
 Identities = 93/180 (51%), Positives = 124/180 (68%), Gaps = 18/180 (10%)

Query: 49  EAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQII 108
            A  PD YRG     ++PD + G ++A+ V + I AM   G+ P  F AES+ S  GQI 
Sbjct: 745 VAEVPDSYRGPE---RWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIF 801

Query: 109 PPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG 156
            P  YLREVY              VQVGFGRVG+HWWAF+ QG  ++PDIVT+GKP+GNG
Sbjct: 802 LPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQG--VVPDIVTMGKPIGNG 859

Query: 157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           HP+ AV+TT+EIA SF + G+EYFNT+GGNPVSCA+  AV++++E E+L+ +AL++GN L
Sbjct: 860 HPMGAVVTTREIADSF-DNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYL 918

Length = 1013

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score =  183 bits (468), Expect = 2e-56
 Identities = 64/176 (36%), Positives = 90/176 (51%), Gaps = 19/176 (10%)

Query: 53  PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPAN 112
           P V    YP    P  +     A D++ L EA+  + +   A   E +Q  GG I+PP  
Sbjct: 157 PGVLHVPYPYRYRPPAE----LADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPG 212

Query: 113 YLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVA 160
           YL+ +     KH        VQ GFGR G  +         + PDIVT+GK +G G P+ 
Sbjct: 213 YLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEH---FGVEPDIVTLGKGLGGGLPLG 269

Query: 161 AVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           AV+  +EI  +F      +  T+GGNP++CA A AV+EVLE E L E+A ++G  L
Sbjct: 270 AVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYL 325

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score =  170 bits (434), Expect = 5e-51
 Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 21/179 (11%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
            P P+ YR  +       E+ G    + ++  +  +    +   A   E +Q  GG I+P
Sbjct: 184 VPYPNPYRCPFGIG---GEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVP 240

Query: 110 PANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           P  +L+ + K             VQ GFGR G   +AF+  G  + PDIVT+ K +G G 
Sbjct: 241 PKGFLKALRKLCREHGILLIADEVQTGFGRTG-KMFAFEHFG--VEPDIVTLAKSLGGGL 297

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           P++AV+   EI          +  T+GGNPV+CA A AV++V+E ENL E A ++G  L
Sbjct: 298 PLSAVVGRAEIMDWPPG---GHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYL 353

Length = 447

>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional

 Score =  158 bits (402), Expect = 1e-44
 Identities = 71/189 (37%), Positives = 107/189 (56%), Gaps = 22/189 (11%)

Query: 40  TRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAES 99
           TRP      E+P  + YRG++        D    Y +DV   +E +  +G+    F  E 
Sbjct: 700 TRPDWVHPVESP--NTYRGRFRG-----ADSAADYVRDVVAQLEELDASGRGLAGFICEP 752

Query: 100 LQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIV 147
           +    G I  P  YL++VY              VQVG+GR+G ++W F+ QG  ++PDI+
Sbjct: 753 VYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQG--VVPDII 810

Query: 148 TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLRE 207
           T+ K MGNGHP+ AVIT +EIA++ +  G  +F++ GG+PVSC +  AV++VL  E L+E
Sbjct: 811 TMAKGMGNGHPLGAVITRREIAEALEAEGY-FFSSTGGSPVSCRIGMAVLDVLREEKLQE 869

Query: 208 HALDVGNQL 216
           +A  VG+ L
Sbjct: 870 NARRVGDHL 878

Length = 972

>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional

 Score =  125 bits (316), Expect = 4e-34
 Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 25/159 (15%)

Query: 72  VKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH----------- 120
           V +  D++ L  A+     +  A   E +Q  GG       YL+ + +            
Sbjct: 167 VPFN-DIEALKAAIT---DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILD 222

Query: 121 -VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQ--ETGV 177
            VQ G GR G   +A+Q  G  I PDI+T+ K +G G P+ AV+  +++A  F   + G 
Sbjct: 223 EVQTGMGRTGK-LFAYQHYG--IEPDIMTLAKGLGGGVPIGAVLAKEKVADVFTPGDHG- 278

Query: 178 EYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
              +T+GGNP++CA A AV+E++E E L E+A +VG  L
Sbjct: 279 ---STFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYL 314

Length = 396

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score =  125 bits (317), Expect = 6e-34
 Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 25/198 (12%)

Query: 37  HVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFF 96
           H    P +      P P  YR  +  +    ++   + A +++ LI   G       AF 
Sbjct: 165 HAFYDPLLPEVLHLPAPYAYRRGFFGE---GDEEFAEAADELEALILEHGPE--TIAAFI 219

Query: 97  AESL-QSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDII 143
            E +    GG ++PP  YL+ V     K+        V  GFGR G     F  +   I+
Sbjct: 220 VEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK---MFACEHAGIV 276

Query: 144 PDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYFN---TYGGNPVSCAVANAVMEV 199
           PDI+ + K +  G+ P++AV+T+  I ++F +     F    TY GNP++CA A A +++
Sbjct: 277 PDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDI 336

Query: 200 LETENLREHALDVGNQLH 217
           LE E+L E   ++G  L 
Sbjct: 337 LEEEDLLERVAEIGAYLQ 354

Length = 449

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score =  123 bits (311), Expect = 2e-33
 Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 17/137 (12%)

Query: 93  CAFFAESLQSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGD 140
            A   E +Q  GG I  P  +L+ +     +H        VQ G GR G   +A++  G 
Sbjct: 186 AAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTG-KLFAYEHYG- 243

Query: 141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
            + PDI+T+ K +G G P+ A++ T+EIA +F  T  ++ +T+GGNP++CAVA AV+EVL
Sbjct: 244 -VEPDILTLAKALGGGFPIGAMLATEEIASAF--TPGDHGSTFGGNPLACAVALAVLEVL 300

Query: 201 ETENLREHALDVGNQLH 217
             E L E+  + G  L 
Sbjct: 301 LEEGLLENVREKGEYLL 317

Length = 404

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score =  121 bits (306), Expect = 4e-33
 Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 21/176 (11%)

Query: 53  PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPAN 112
           P VY   YP  +  +E+L    A +   LI+A+        A   E +Q  GG + PP  
Sbjct: 143 PGVYFLPYPDLEAAEEELAC--ADEALRLIKAVH--DDNIAAVIVEPIQGEGGVVPPPPG 198

Query: 113 YLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVA 160
           +L  +     KH        VQ GFGR G   +A +     + PDI+T+ K +  G P++
Sbjct: 199 FLAGLREICKKHGVLLIADEVQTGFGRTGK-LFACE--HYGVTPDIMTLAKALTGGLPLS 255

Query: 161 AVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           AV+ T EI ++F      +  T+GGNP++CA A AV++++E ENL ++A + G+ L
Sbjct: 256 AVLATAEIMQAFHPGS--HGGTFGGNPLACAAALAVLDIIEDENLLQNAQEKGDYL 309

Length = 338

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score =  104 bits (261), Expect = 4e-26
 Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 19/136 (13%)

Query: 94  AFFAESLQSCGGQIIPPANYLREV----YKH--------VQVGFGRVGTHWWAFQLQGDD 141
           A   E +Q  GG ++PP N+ +E+     K+        VQ G GR G   +A +  G  
Sbjct: 224 AIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK-MFAIEHFG-- 280

Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE 201
           + PDI+T+ K +  G P+ AVI   E+   F   G  + NT+GGNPV+ A A A +E LE
Sbjct: 281 VEPDIITLAKAIAGGLPLGAVIGRAELM--FLPPGS-HANTFGGNPVAAAAALATLEELE 337

Query: 202 TENLREHALDVGNQLH 217
            E L E+A  +G  L 
Sbjct: 338 -EGLLENAQKLGEYLR 352

Length = 441

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score =  102 bits (256), Expect = 1e-25
 Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 24/172 (13%)

Query: 61  PADKYPDEDL--GVKYA--QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYL-- 114
           P  +   E L  G  YA   D++ L +A+        A   E +Q  GG     A +L  
Sbjct: 139 PKYQKGFEPLVPGFSYAPYNDIESLKKAID---DETAAVIVEPIQGEGGVNPASAEFLKA 195

Query: 115 -RE---------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVIT 164
            RE         ++  VQ G GR G  ++A++  G  I PDI+T+ K +G G P+ A + 
Sbjct: 196 LREICKDKDALLIFDEVQTGIGRTG-KFFAYEHYG--IEPDIITLAKGLGGGVPIGATLA 252

Query: 165 TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
            +E+A++F     ++ +T+GGNP++CA A AV+EV+E E L E+  + G+  
Sbjct: 253 KEEVAEAFTPG--DHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYF 302

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional

 Score =  102 bits (256), Expect = 2e-25
 Identities = 66/193 (34%), Positives = 91/193 (47%), Gaps = 43/193 (22%)

Query: 51  PCPDVYR---GKYPAD------KYPDEDL-GVKYAQDVQDLIEAMGRNGKRPCAFFAESL 100
           P PD YR   GK P        +Y  E   G  YA+ V               A FAE +
Sbjct: 168 PYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGV--------------AALFAEPI 213

Query: 101 QSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVT 148
           Q   G I+PP +Y +++ K             VQ G GR G   W F ++   + PDI+T
Sbjct: 214 QGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGK--W-FAIEHFGVEPDIIT 270

Query: 149 VGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREH 208
           +GKP+G G P++A I   EI  S       +  T  GNPV+ A A AV+E +E +NL + 
Sbjct: 271 LGKPLGGGLPISATIGRAEIMDSLPPLAHAF--TLSGNPVASAAALAVIEEIEEKNLLKR 328

Query: 209 ALDVGNQLHTPKK 221
           A  +GN  +T K+
Sbjct: 329 AEKLGN--YTKKR 339

Length = 443

>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase

 Score =  100 bits (252), Expect = 4e-25
 Identities = 62/188 (32%), Positives = 94/188 (50%), Gaps = 33/188 (17%)

Query: 44  VRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSC 103
           + MST+   PD      P   Y      + Y  +++ L EA+  +G   CAF  E +Q  
Sbjct: 146 ISMSTD---PDSRTNFGP---YVPGFKKIPY-NNLEALEEALEDHGPNVCAFIVEPIQGE 198

Query: 104 GGQIIPPANYLREVY----KH--------VQVGFGRVG----THWWAFQLQGDDIIPDIV 147
            G ++P   YL++V     KH        +Q G GR G              +++ PDIV
Sbjct: 199 AGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDH-------ENVKPDIV 251

Query: 148 TVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLR 206
            +GK +  G  PV+AV+   ++  +  + G E+ +TYGGNP++CAVA A +EVLE E L 
Sbjct: 252 LLGKALSGGVYPVSAVLADDDVMLTI-KPG-EHGSTYGGNPLACAVAVAALEVLEEEKLA 309

Query: 207 EHALDVGN 214
           E+A  +G 
Sbjct: 310 ENAEKLGE 317

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401

>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional

 Score = 96.1 bits (240), Expect = 2e-23
 Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 17/135 (12%)

Query: 94  AFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDD 141
           A F E +Q   G + PPA YL              V   VQ G GR G  W+A Q  G  
Sbjct: 186 AVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTG-AWFAHQHDG-- 242

Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE 201
           + PD+VT+ K +G G P+ A +     A     T   + +T+GGNPV+CA A AV++ + 
Sbjct: 243 VTPDVVTLAKGLGGGLPIGACLAFGPAADLL--TPGLHGSTFGGNPVACAAALAVLDTIA 300

Query: 202 TENLREHALDVGNQL 216
           +E L E+A  +G QL
Sbjct: 301 SEGLLENAERLGEQL 315

Length = 398

>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated

 Score = 94.7 bits (236), Expect = 1e-22
 Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 25/184 (13%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
            P PD YR   P  +  D    ++  +++  ++       +   A   E + + GG ++P
Sbjct: 177 VPPPDCYRM--PGIESEDIY-DLECVKEIDRVMTWEL--SETIAAVIMEPIITGGGVLMP 231

Query: 110 PANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           P +Y++ V     KH        V  GFGR G    AF      + PDI+T+ K + + +
Sbjct: 232 PQDYMKAVKEICQKHGALLISDEVICGFGRTGK---AFGFMNYGVKPDIITMAKGITSAY 288

Query: 158 -PVAAVITTKEIAKSFQETG-VEYF---NTYGGNPVSCAVANAVMEVLETENLREHALDV 212
            P++A    KEI ++F+  G  E+F   NT+GGNP +CA+A   +E++E ENL E +  +
Sbjct: 289 LPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQL 348

Query: 213 GNQL 216
           G  L
Sbjct: 349 GELL 352

Length = 451

>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase

 Score = 94.5 bits (235), Expect = 2e-22
 Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 30/181 (16%)

Query: 53  PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPAN 112
            +  RG  P        L V +  D+  L +    +G R  AF  E +Q   G +IPP  
Sbjct: 190 NEATRGFGP---LLPGHLKVDFG-DLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDG 245

Query: 113 YLREVY----KH--------VQVGFGRVG----THWWAFQLQGDDIIPDIVTVGKPMGNG 156
           YL+ V     KH        +Q G  R G      W       +++ PD+V +GK +G G
Sbjct: 246 YLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDW-------EEVRPDVVILGKALGGG 298

Query: 157 -HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQ 215
             PV+AV+  K++    +    E+ +T+GGNP++ AVA A ++V++ E L E +  +G +
Sbjct: 299 VIPVSAVLADKDVMLCIKPG--EHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQE 356

Query: 216 L 216
           L
Sbjct: 357 L 357

Length = 474

>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 93.7 bits (234), Expect = 2e-22
 Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 34/187 (18%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESL-QSCGGQII 108
            P P  YR   P D         +    ++ L+E    +     AF  E L Q  GG   
Sbjct: 163 IPAPPCYRCWDPDDCEA------ECLAALEALLE---EHADEIAAFIVEPLVQGAGGMRF 213

Query: 109 PPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG 156
            P  YLR++ +             +  GFGR G   +A +     + PDI+ + K +  G
Sbjct: 214 YPPEYLRKLRELCDEYGVLLIADEIATGFGRTGK-LFACEH--AGVTPDILCLSKGLTGG 270

Query: 157 H-PVAAVITTKEIAKSF---QETGVEYF---NTYGGNPVSCAVANAVMEVLETENLREHA 209
           + P+AA +TT EI ++F    E     F   +TY GNP++CA A A +++LE E+  E  
Sbjct: 271 YLPLAATLTTDEIYEAFYSDDEGKA--FMHGHTYTGNPLACAAALASLDLLEEEDWLEQV 328

Query: 210 LDVGNQL 216
             +  QL
Sbjct: 329 ARIEAQL 335

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417

>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated

 Score = 93.0 bits (232), Expect = 4e-22
 Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 22/162 (13%)

Query: 67  DEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------- 119
            E+ G+  A+ ++  I  +G +     AF  E +Q  GG IIPPA Y  E+ +       
Sbjct: 197 PEEFGLAAARQLEAKILELGAD--NVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDI 254

Query: 120 -----HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQ 173
                 V  GFGR G  W+  Q  G  I PD++T+ K + +G+ P+ AV     +A+   
Sbjct: 255 LLVADEVICGFGRTG-EWFGSQHFG--IKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLI 311

Query: 174 ETGVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDV 212
           E G E FN   TY G+PV+ AVA A + +L  E + E   D 
Sbjct: 312 EEGGE-FNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDD 352

Length = 456

>gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed

 Score = 92.7 bits (231), Expect = 5e-22
 Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 17/122 (13%)

Query: 93  CAFFAESLQSCGGQIIPPANYLREV----YKH--------VQVGFGRVGTHWWAFQLQGD 140
           CA   E +Q  GG I     +L+ +     +H        VQ G GR G   +A+     
Sbjct: 186 CAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTG-DLFAYM--HY 242

Query: 141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
            + PDI+T  K +G G P+ A++TT EIA  F+  G  + +TYGGNP++CAVA AV +++
Sbjct: 243 GVTPDILTSAKALGGGFPIGAMLTTAEIASHFK-VGT-HGSTYGGNPLACAVAEAVFDII 300

Query: 201 ET 202
            T
Sbjct: 301 NT 302

Length = 403

>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional

 Score = 92.1 bits (229), Expect = 7e-22
 Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 21/158 (13%)

Query: 72  VKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------ 119
           V Y  DV+ L + +        AF  E +Q   G I+P   YL++VY+            
Sbjct: 162 VDY-NDVEALEKLL--QDPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVD 218

Query: 120 HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVE 178
            +Q G GR G          + + PDIV +GK +  G  P++AV+   ++    +    E
Sbjct: 219 EIQTGLGRTGKLLAH---DHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPG--E 273

Query: 179 YFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           + +TYGGNP++CAVA   +EVL+ E L E+A  +G   
Sbjct: 274 HGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVF 311

Length = 400

>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional

 Score = 91.0 bits (226), Expect = 3e-21
 Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 16/155 (10%)

Query: 75  AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQ 122
            + ++  +    + G    A   E +Q  GG I+PP  YL  V K             VQ
Sbjct: 215 IEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQ 274

Query: 123 VGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFN 181
            G GR G     F  + +++ PDI+ + K +G G  P+ A I T+E+     +    +  
Sbjct: 275 TGMGRTGK---MFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTT 331

Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           T+GGNP++CA A A + VL  +NL   A   G+ L
Sbjct: 332 TFGGNPLACAAALATINVLLEQNLPAQAEQKGDYL 366

Length = 459

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score = 90.1 bits (224), Expect = 4e-21
 Identities = 45/131 (34%), Positives = 75/131 (57%), Gaps = 17/131 (12%)

Query: 98  ESLQSCGGQIIPPANYLREV------------YKHVQVGFGRVGTHWWAFQLQGDDIIPD 145
           E +   GG I+PP ++L+++            +  VQ GFGR G  W  F  Q   ++PD
Sbjct: 214 EPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTG-EW--FAAQTFGVVPD 270

Query: 146 IVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENL 205
           I+T+ K + +G P++AV+ +KE+ +  Q     +  T+GGNPV+CA A A +EV++ E L
Sbjct: 271 IMTIAKGIASGLPLSAVVASKELME--QWPLGSHGTTFGGNPVACAAALATLEVIKEEKL 328

Query: 206 REHALDVGNQL 216
            ++A ++G   
Sbjct: 329 LDNANEMGAYA 339

Length = 433

>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional

 Score = 90.1 bits (224), Expect = 5e-21
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 31/183 (16%)

Query: 52  CPDVYRGKYPADKYPDE--DLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
            P+ YR   PA        D  V    + +D I ++G       AF AE +   GG I+P
Sbjct: 186 SPNPYR--RPAGMSEAAFCDFLV---DEFEDKILSLG--ADNIAAFIAEPILGSGGVIVP 238

Query: 110 PANYLREVYK------------HVQVGFGRVGTHWWAFQ-LQGDDIIPDIVTVGKPMGNG 156
           P  Y   + +             V  GFGR+G H++A + + G  I PDI+T  K + +G
Sbjct: 239 PPGYHARMREICRRYDILYISDEVVTGFGRLG-HFFASEAVFG--IQPDIITFAKGLTSG 295

Query: 157 H-PVAAVITTKEIAKSFQETGVE--YFN---TYGGNPVSCAVANAVMEVLETENLREHAL 210
           + P+ AVI ++ +         +   F    TY G+PV+CA A   +E++E E L EH  
Sbjct: 296 YQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVR 355

Query: 211 DVG 213
           +VG
Sbjct: 356 EVG 358

Length = 466

>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional

 Score = 88.2 bits (219), Expect = 2e-20
 Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 17/129 (13%)

Query: 98  ESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPD 145
           E++Q  GG + P   Y   +YK             +Q G GR G  W +       I PD
Sbjct: 214 ETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGK-WSSISHFN--ITPD 270

Query: 146 IVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENL 205
           +++ GK +  G P++A++  KEI +S +     +  T G NPVSCA A A ++++E E+L
Sbjct: 271 LMSFGKSLAGGMPMSAIVGRKEIMESLEAPAHLF--TTGANPVSCAAALATIDMIEDESL 328

Query: 206 REHALDVGN 214
            + + + G 
Sbjct: 329 LQRSAEKGE 337

Length = 445

>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional

 Score = 87.9 bits (218), Expect = 2e-20
 Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 21/159 (13%)

Query: 77  DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVG 124
           D++ L  A+  N     AF  E +Q   G  IPP  +L+   +             +Q G
Sbjct: 175 DLEALKAAITPN---TAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTG 231

Query: 125 FGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTY 183
            GR G     F    D++ PD+  +GK +G G  P++ V   ++I   F   G  + +T+
Sbjct: 232 LGRTGK---LFACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVF-TPG-SHGSTF 286

Query: 184 GGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
           GGNP++CAV+ A +EVLE E L E +L++G       KE
Sbjct: 287 GGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKE 325

Length = 396

>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family

 Score = 87.5 bits (217), Expect = 3e-20
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 17/125 (13%)

Query: 93  CAFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGD 140
           CA   E +Q  GG +     +L+             ++  VQ G GR G   +A+   G 
Sbjct: 181 CAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYMHYG- 238

Query: 141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
            + PDI+T  K +G G P+ A++TT EIA   +  G  +  TYGGNP++CAVA  V++++
Sbjct: 239 -VTPDILTSAKALGGGFPIGAMLTTTEIAAHLK-VGT-HGTTYGGNPLACAVAGKVLDLV 295

Query: 201 ETENL 205
            T  L
Sbjct: 296 NTPEL 300

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397

>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 85.6 bits (213), Expect = 1e-19
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 29/173 (16%)

Query: 53  PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESL-QSCGGQIIPPA 111
            +     +P D Y    L          L   + ++     AF  E L Q  GG +    
Sbjct: 169 FEQVTAPFPPDGYEQATL--------DALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDP 220

Query: 112 NYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-P 158
            YL E+     +H        +  GFGR GT    F  +   + PDI+ + K +  G+ P
Sbjct: 221 RYLAELRRICDRHGVLLIFDEIATGFGRTGT---LFACEQAGVSPDIMCLSKGLTGGYLP 277

Query: 159 VAAVITTKEIAKSF--QETGVEYFN--TYGGNPVSCAVANAVMEVLETENLRE 207
           +AA + T EI ++F   +    + +  +Y  NP++CA ANA +++ E E + E
Sbjct: 278 LAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLE 330

Length = 423

>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 84.8 bits (210), Expect = 4e-19
 Identities = 61/207 (29%), Positives = 95/207 (45%), Gaps = 38/207 (18%)

Query: 37  HVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFF 96
           H +    +  + + P P  YR  Y  DK    ++  K+ +++++L++      +   A  
Sbjct: 175 HQVYSSLLFEAIKMPYPYTYRSPYGNDK---AEIVKKHLEELEELLKE---KHEEIAAII 228

Query: 97  AESL-QSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDII 143
            E L Q  GG I  P  YL+ +               V  GFGR G     F  + +++ 
Sbjct: 229 VEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGK---MFACEHENVT 285

Query: 144 PDIVTVGKPMGNGH-PVAAVITTKEIAKSF------QETGVEYFN--TYGGNPVSCAVAN 194
           PDI+T GK +  G+ P+A  +TT EI  +F      Q+T   +F+  +Y GNP+ CAVA 
Sbjct: 286 PDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKT---FFHGHSYTGNPLGCAVAL 342

Query: 195 AVMEVLETENLREH----ALDVGNQLH 217
           A +E+ E  NL E        V  QL 
Sbjct: 343 ANLELYEKTNLIEQVARKTEYVATQLE 369

Length = 460

>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional

 Score = 83.7 bits (208), Expect = 7e-19
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 23/139 (16%)

Query: 94  AFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGT---HWWAFQLQ 138
           A   E +Q  GG    P  +L+             ++  VQ G GR G    H WA    
Sbjct: 178 AILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWA---- 233

Query: 139 GDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVME 198
              + PDI+ V K +G G P+ A + T+E AK    T   + +TYGGNP++ AV NAV++
Sbjct: 234 --GVTPDIMAVAKGIGGGFPLGACLATEEAAKGM--TPGTHGSTYGGNPLAMAVGNAVLD 289

Query: 199 VLETENLREHALDVGNQLH 217
           V+      ++   +G  L 
Sbjct: 290 VILAPGFLDNVQRMGLYLK 308

Length = 389

>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional

 Score = 83.1 bits (206), Expect = 2e-18
 Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 28/172 (16%)

Query: 60  YPADKYPD--EDLGVKYAQDVQDLIEAMGRNGKRP---CAFFAESLQSCGGQIIPPANY- 113
           Y A +  D  E  G   A  +++ IE  G     P    A F E +Q+ GG   PP  Y 
Sbjct: 190 YRAPELGDDPEAFGRWAADRIEEAIEFEG-----PDTVAAVFLEPVQNAGGCFPPPPGYF 244

Query: 114 --LRE---------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAA 161
             +RE         V   V   FGR+G   +  +  G   +PDI+T  K + +G+ P+ A
Sbjct: 245 ERVREICDRYDVLLVSDEVICAFGRLG-EMFGCERFG--YVPDIITCAKGITSGYSPLGA 301

Query: 162 VITTKEIAKSFQETGVEYFN--TYGGNPVSCAVANAVMEVLETENLREHALD 211
           +I +  + + F +    + +  T+GG+PVS AVA A +++ E E L +H  D
Sbjct: 302 MIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRD 353

Length = 460

>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed

 Score = 80.6 bits (199), Expect = 1e-17
 Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 21/133 (15%)

Query: 98  ESLQSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPD 145
           E +Q  GG I+P   +++EV     +H        +Q GF R G +   F ++  D++PD
Sbjct: 226 EPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKY---FAIEHFDVVPD 282

Query: 146 IVTVGKPMGNGHPVAAVITTKEI--AKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETE 203
           ++TV K +G G P++ VI  KEI    +  E G     TY G+P+ CA A AV++++E E
Sbjct: 283 LITVSKSLGAGVPISGVIGRKEIMDESAPGELG----GTYAGSPLGCAAALAVLDIIEKE 338

Query: 204 NLREHALDVGNQL 216
           NL + A+++G  +
Sbjct: 339 NLNDRAIELGKVV 351

Length = 451

>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 21/137 (15%)

Query: 94  AFFAESLQSCGGQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGDD 141
           A   E +    G +IPP  YL   RE         ++  V  GFGR+G     F  Q   
Sbjct: 218 AVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA---PFAAQYFG 274

Query: 142 IIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQ---ETGVEYFN--TYGGNPVSCAVANA 195
           + PD++T  K + NG  P+ AV  + EI  +F    E G+E+F+  TY G+P++CA A A
Sbjct: 275 VTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALA 334

Query: 196 VMEVLETENLREHALDV 212
            +++ E E L   A  +
Sbjct: 335 TLDLYEREGLLTRAARL 351

Length = 442

>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional

 Score = 77.5 bits (191), Expect = 1e-16
 Identities = 60/188 (31%), Positives = 91/188 (48%), Gaps = 24/188 (12%)

Query: 43  PVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDL--IEAMGRNGKRPCAFFAESL 100
           P ++   A  PDVY   +P + +     GV   Q +  L  +     + +R  A   E +
Sbjct: 153 PYKVGFGAMMPDVYHVPFPVELH-----GVSVEQSLAALDKLFKADVDPQRVAAIIIEPV 207

Query: 101 QSCGGQIIPPANY---LREVY-KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVT 148
           Q  GG    PA +   LRE+  +H        VQ GF R G     F ++  ++  D+ T
Sbjct: 208 QGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK---LFAMEHHEVAADLTT 264

Query: 149 VGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREH 208
           + K +  G P+AAV    EI  +    G+    TYGGNP+  A A+AV++V+E E+L E 
Sbjct: 265 MAKGLAGGFPLAAVTGRAEIMDAPGPGGLG--GTYGGNPLGIAAAHAVLDVIEEEDLCER 322

Query: 209 ALDVGNQL 216
           A  +GN+L
Sbjct: 323 ANQLGNRL 330

Length = 425

>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional

 Score = 77.2 bits (191), Expect = 1e-16
 Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 23/159 (14%)

Query: 71  GVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYL---REVY-KH------ 120
           G + A D++ L+           A   E +    G ++PP  YL   RE+  KH      
Sbjct: 200 GAELADDLERLVALHD--ASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIF 257

Query: 121 --VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQ---E 174
             V  GFGR+G    AF  +   + PDI+T  K + NG  P+ AVI + EI  +F    E
Sbjct: 258 DEVITGFGRLGA---AFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPE 314

Query: 175 TGVEYFN--TYGGNPVSCAVANAVMEVLETENLREHALD 211
             +E+F+  TY  +PV+CA   A +++   E+L E A +
Sbjct: 315 YAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAE 353

Length = 445

>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional

 Score = 76.6 bits (189), Expect = 2e-16
 Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 25/184 (13%)

Query: 51  PCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
             P +YR  +     P+E L    A+ ++  I   G +     AF AE +Q  GG I+PP
Sbjct: 177 ETPWLYRNPFTEQD-PEE-LARICARLLEREIAFQGPD--TIAAFIAEPVQGAGGVIVPP 232

Query: 111 ANY---LREVY-KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
           AN+   +REV  +H        V  GFGR G+ W+  +  G  + PDI+ + K + +G+ 
Sbjct: 233 ANFWPLVREVCDRHGILLIADEVVTGFGRTGS-WFGSRGWG--VKPDIMCLAKGITSGYV 289

Query: 158 PVAAVITTKEIAKSFQET-----GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDV 212
           P+ A +    IA +F+        + +  TY G+PV+CA A A ++++  E+L  +A   
Sbjct: 290 PLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKR 349

Query: 213 GNQL 216
           G  L
Sbjct: 350 GAYL 353

Length = 449

>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed

 Score = 75.6 bits (186), Expect = 5e-16
 Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 18/136 (13%)

Query: 94  AFFAESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDD 141
           AF  E +Q   G IIPPA Y   V +             +Q G GR G    A + +G  
Sbjct: 190 AFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK-LLAEEHEG-- 246

Query: 142 IIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
           I  D+  +GK +  G +PV+AV++  E+    +    ++ +T+GGNP++CAVA A ++VL
Sbjct: 247 IEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPG--QHGSTFGGNPLACAVARAALKVL 304

Query: 201 ETENLREHALDVGNQL 216
             E + E+A ++G   
Sbjct: 305 TEEGMIENAAEMGAYF 320

Length = 401

>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase

 Score = 75.8 bits (186), Expect = 5e-16
 Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 16/143 (11%)

Query: 87  RNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWA 134
           + G    A   E +Q  GG I+PP  YL  V               VQ G GR G     
Sbjct: 220 KTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGK---M 276

Query: 135 FQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVA 193
           F  + + + PDI+ + K +G G  P+ A I T+ +     +    +  T+GGNP++CA A
Sbjct: 277 FACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAA 336

Query: 194 NAVMEVLETENLREHALDVGNQL 216
            A +  L  +NL   A   G+ L
Sbjct: 337 LATINELLEKNLPAQAAIKGDFL 359

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442

>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type

 Score = 75.7 bits (186), Expect = 6e-16
 Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 26/182 (14%)

Query: 53  PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNG------KRPCAFFAESLQSCGGQ 106
           P+VYR   P   YP  D  +         + A               A   E +Q  GG 
Sbjct: 156 PEVYRAPLP---YPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGF 212

Query: 107 IIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMG 154
           I+P   ++  +     +H        VQ GF R G     F  + +   PD++T  K + 
Sbjct: 213 IVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAM---FACEHEGPEPDLITTAKSLA 269

Query: 155 NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGN 214
           +G P++ V    EI  +    G+    TY GNP++CA A AV+ ++E+E L E A  +G 
Sbjct: 270 DGLPLSGVTGRAEIMDAPAPGGLG--GTYAGNPLACAAALAVLAIIESEGLIERARQIGR 327

Query: 215 QL 216
            +
Sbjct: 328 LV 329

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420

>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

 Score = 75.1 bits (185), Expect = 6e-16
 Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 21/124 (16%)

Query: 93  CAFFAESLQSCGGQIIPPANY-----LRE---------VYKHVQVGFGRVGTHWWAFQLQ 138
           CA   E +Q  GG I  PA+      LRE         ++  VQ G GR G   +A+   
Sbjct: 185 CAVIVEPIQGEGGVI--PADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYMHY 241

Query: 139 GDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVME 198
           G  + PD++T  K +G G P+ A++TT++ A      G  +  TYGGNP++ AVA  V+E
Sbjct: 242 G--VTPDVLTTAKALGGGFPIGAMLTTEKCASVMT-VGT-HGTTYGGNPLASAVAGKVLE 297

Query: 199 VLET 202
           ++ T
Sbjct: 298 LINT 301

Length = 406

>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase

 Score = 75.1 bits (185), Expect = 6e-16
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 21/140 (15%)

Query: 91  RPCAFFAESLQSCGGQIIPPAN-----YLRE---------VYKHVQVGFGRVGTHWWAFQ 136
           +  A F E +Q  GG  I PA       LR          V+  VQ G GR G + WA +
Sbjct: 167 KTAAVFVEPVQGEGG--IYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG-YLWAHE 223

Query: 137 LQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAV 196
             G  + PDI+T+ KP+  G P+ AV+ T+++A +      ++ +T+ G P+ C  A AV
Sbjct: 224 AYG--VEPDIMTLAKPLAGGLPIGAVLVTEKVASAINPG--DHGSTFAGGPLVCNAALAV 279

Query: 197 MEVLETENLREHALDVGNQL 216
           ++ +            G  L
Sbjct: 280 LDKISKPGFLASVAKKGEYL 299

Length = 382

>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 45/137 (32%), Positives = 66/137 (48%), Gaps = 21/137 (15%)

Query: 98  ESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPD 145
           E +Q  GG I     +L+EV               VQ G GR GT    F  +   + PD
Sbjct: 174 EVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGT---LFAYEQFGLDPD 230

Query: 146 IVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--- 202
           IVTV K +GNG PV A+I  KE+  +F      + +T+GGNP++ A A  V++V++    
Sbjct: 231 IVTVAKGLGNGIPVGAMIGKKELGTAF--GPGSHGSTFGGNPLAMAAAKEVLQVIKQPSF 288

Query: 203 -ENLREHALDVGNQLHT 218
            E ++E       +L  
Sbjct: 289 LEEVQEKGEYFLQKLQE 305

Length = 377

>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 58/177 (32%), Positives = 83/177 (46%), Gaps = 23/177 (12%)

Query: 53  PDVYRG--KYP-ADKYPDEDLGVKYAQDVQDLIEA-MGRNGKRPCAFFAESLQSCGGQII 108
           P+VYR    YP  D       G + A     +IE  +G       A   E +Q  GG I+
Sbjct: 179 PEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVG--ADNLAAVIIEPIQGEGGFIV 236

Query: 109 PPANYL-------RE-----VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG 156
           P   +L       RE     +   VQ GF R G  W+A + +G  I+PD++T  K +  G
Sbjct: 237 PAEGFLPALLEWCRENGVVFIADEVQTGFARTG-AWFACEHEG--IVPDLITTAKGIAGG 293

Query: 157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVG 213
            P++AV    EI  +    G+    TYGGNPV+CA A A +E +E ++L   A  + 
Sbjct: 294 LPLSAVTGRAEIMDAPHPGGLG--GTYGGNPVACAAALAAIETIEEDDLVARARQIE 348

Length = 443

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score = 73.8 bits (181), Expect = 3e-15
 Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 21/178 (11%)

Query: 51  PCPDVYRGKYPADKY--PDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQII 108
           P P+ YR  +  + Y  PDE L  ++   +++ + +         A FAE +Q   G ++
Sbjct: 181 PYPNPYRNPWGINGYEEPDE-LINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVV 239

Query: 109 PPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG 156
           PP N+ +E+ K             VQ G GR G  W+A +     + PD++  GK + +G
Sbjct: 240 PPENFFKELKKLLDEHGILLVMDEVQTGIGRTGK-WFASEWFE--VKPDLIIFGKGVASG 296

Query: 157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGN 214
             ++ VI  KE+      T      T   NPV  A A A +E++E ENL ++AL VG 
Sbjct: 297 MGLSGVIGRKEL---MDLTSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGE 351

Length = 457

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score = 73.6 bits (181), Expect = 3e-15
 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 25/175 (14%)

Query: 51  PCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
           P    YRG +P     D    V YA  ++ +IE  G  G    AF AE++++   Q+   
Sbjct: 197 PPAVSYRGAFPD---ADGS-DVHYADYLEYVIEKEGGIG----AFIAEAVRNTDVQVPSK 248

Query: 111 ANY--LREVY-KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-P 158
           A +  +RE+  KH        +  G GR G  W+  Q     I PDI+ +GK +G G  P
Sbjct: 249 AYWKRVREICDKHNVLLIIDEIPNGMGRTG-EWFTHQ--AYGIEPDILCIGKGLGGGLVP 305

Query: 159 VAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVG 213
           +AA+IT K+   +  +  + ++ T+  +P+ CA A A +EV+E E L E      
Sbjct: 306 IAAMIT-KDKYNTAAQISLGHY-THEKSPLGCAAALATIEVIEQEGLLEKVKADS 358

Length = 459

>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase

 Score = 73.3 bits (180), Expect = 3e-15
 Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 25/175 (14%)

Query: 52  CPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPA 111
           CP  +R   P +   +E+   + A ++++LI   G   +   AF AE +   GG I PPA
Sbjct: 225 CPHYWRFHLPGET--EEEFSTRLADNLENLILKEGP--ETIAAFIAEPVMGAGGVIPPPA 280

Query: 112 NYLREVYKHVQ------------VGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-P 158
            Y  ++   ++              FGR+GT    F     +I PD+V++ K + + + P
Sbjct: 281 TYFEKIQAVLKKYDILFIADEVICAFGRLGT---MFGCDKYNIKPDLVSLAKALSSAYMP 337

Query: 159 VAAVITTKEIAKSF--QETGVEYFN---TYGGNPVSCAVANAVMEVLETENLREH 208
           + AV+ + EI+     Q   +  F    TY G+PVSCAVA   +++ +  N+ EH
Sbjct: 338 IGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEH 392

Length = 504

>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional

 Score = 73.2 bits (180), Expect = 4e-15
 Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 41/208 (19%)

Query: 37  HVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGK-RPCAF 95
            ++   P         P  YR              +  A +++  IE   R G     AF
Sbjct: 155 SLLEDYPT-----ISAPYCYRCPVQKVY---PTCQLACATELETAIE---RIGAEHIAAF 203

Query: 96  FAESL-QSCGGQIIPPANY---LREVYKH---------VQVGFGRVGT-----HWWAFQL 137
            AE +  + G  ++PP  Y   ++E+  H         V  G GR G      HW     
Sbjct: 204 IAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHW----- 258

Query: 138 QGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETG--VEYFNTYGGNPVSCAVAN 194
               + PDI+T+GK +G G+ P+AA + +  + +        +   +T   NP+S A A 
Sbjct: 259 ---GVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATAL 315

Query: 195 AVMEVLETENLREHALDVGNQLHTPKKE 222
           AV+E +E  NL E A + G  L    ++
Sbjct: 316 AVLEYMEKHNLPEKAAEKGEYLIKGLQK 343

Length = 447

>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional

 Score = 73.1 bits (180), Expect = 4e-15
 Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 25/184 (13%)

Query: 52  CPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPA 111
           CP  YR   P +   +E    + A +++ LI A G +     AF  E +   GG I+PP 
Sbjct: 183 CPHYYRFGLPGES--EEAFATRLANELEALILAEGPD--TIAAFIGEPVMGAGGVIVPPK 238

Query: 112 NY-------LRE-----VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-P 158
            Y       LR+     V   V  GFGR G   +  +  G  I PDI+ + K + + + P
Sbjct: 239 TYWEKIQAVLRKYDILLVADEVICGFGRTGN-MFGCETFG--IKPDILVMSKQLSSSYQP 295

Query: 159 VAAVITTKEIAKSFQETG--VEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVG 213
           ++AV+  +++     +    +  F    T  G+PV+ AVA   + ++E  +L  +A + G
Sbjct: 296 LSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERG 355

Query: 214 NQLH 217
            +L 
Sbjct: 356 ARLQ 359

Length = 460

>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 37/211 (17%)

Query: 25  RKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEA 84
           R+   P   EA HV           +PC   Y  +       DE  G + A +++  I  
Sbjct: 149 REPFAPLLIEAHHV-----------SPC---YAYREQRAGESDEAYGQRLADELEAKILE 194

Query: 85  MGRNGKRPCAFFAESL-QSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTH 131
           +G +     AF AE++  +  G + P   Y + +     ++        V  G GR GT 
Sbjct: 195 LGPD--TVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGT- 251

Query: 132 WWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYF---NTYGGNP 187
              F  + D + PD+VT+ K +G G+ P+ AV+ +  I  +  + G  +F   +TY G+ 
Sbjct: 252 --LFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIAD-GSGFFQHGHTYLGHA 308

Query: 188 VSCAVANAVMEVLETENLREHALDVGNQLHT 218
            +CA A AV  V+  + L  +    G QL  
Sbjct: 309 TACAAALAVQRVIAEDGLLANVRARGEQLRA 339

Length = 443

>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional

 Score = 69.3 bits (170), Expect = 7e-14
 Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 6/96 (6%)

Query: 121 VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYF 180
           VQ G GR GT  +A++L G  I PDI+T+GK +G G P+AA++   E+A  F E G +  
Sbjct: 221 VQTGCGRTGT-LFAYELSG--IEPDIMTLGKGIGGGVPLAALLAKAEVA-VF-EAG-DQG 274

Query: 181 NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
            TY GNP+  AV  AV+  L      E     G  L
Sbjct: 275 GTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYL 310

Length = 395

>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 56/179 (31%), Positives = 77/179 (43%), Gaps = 26/179 (14%)

Query: 55  VYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRP---CAFFAESLQSCGG-QIIPP 110
           VYR  YP   +     GV    D    IE + +N   P    A   E +Q  GG     P
Sbjct: 166 VYRALYPCPLH-----GVS-EDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASP 219

Query: 111 A--NYLRE---------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPV 159
           A    LR          +   VQ G GR GT    F ++   +  D+ T  K +  G P+
Sbjct: 220 AFMQRLRALCDEHGIMLIADEVQTGAGRTGTL---FAMEQMGVAADLTTFAKSIAGGFPL 276

Query: 160 AAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHT 218
           A V    E+  +    G+    TY GNP++CA A AV++V E ENL + A  +G +L  
Sbjct: 277 AGVTGRAEVMDAIAPGGLG--GTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKD 333

Length = 425

>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 20/159 (12%)

Query: 68  EDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK-------- 119
            + G + A  +++ I  +G   +    F AE  Q  GG I PP +Y  E+ +        
Sbjct: 201 AEFGRRAALQLEEKILELG--AENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVL 258

Query: 120 ----HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQE 174
                V  GFGR G  W+A +  G +  PD +++ K + +G+ P+  ++ +K IA++  E
Sbjct: 259 LCADEVIGGFGRTG-EWFAHEHFGFE--PDTLSIAKGLTSGYVPMGGLVLSKRIAEALVE 315

Query: 175 TGVEYFN--TYGGNPVSCAVANAVMEVLETENLREHALD 211
            G  + +  TY G+PV+ AVA A ++ L  E +     D
Sbjct: 316 QGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKD 354

Length = 460

>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 27/185 (14%)

Query: 52  CPDVYRGKYPADKYPDEDLGVKY-AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
            P  YR          E+    Y A ++++LI A G +     AF AE +   GG + PP
Sbjct: 185 APHYYRRADAGM---SEEQFSAYCADELEELILAEGPD--TIAAFIAEPVLGTGGIVPPP 239

Query: 111 ANY---LREVYK---------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
           A Y   ++ V K          V  GFGR+G+    F      I PD++TV K + + + 
Sbjct: 240 AGYWPAIQAVLKKYDILLIADEVVTGFGRLGS---MFGSDHYGIEPDLITVAKGLTSAYA 296

Query: 158 PVAAVITT----KEIAKSFQETG-VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDV 212
           P++  I        + +   E G + +  TY G+P+  A A A +++LE ENL  +A +V
Sbjct: 297 PLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEV 356

Query: 213 GNQLH 217
           G    
Sbjct: 357 GAYFR 361

Length = 461

>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional

 Score = 67.4 bits (165), Expect = 5e-13
 Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 3/53 (5%)

Query: 2   ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVR---MSTEAP 51
            R+ +IGDVRG+GLF+G+ELVT RK K PAT+ A++V      R   + TE P
Sbjct: 927 DRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGP 979

Length = 1013

>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 16/139 (11%)

Query: 94  AFFAESLQSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDD 141
           A   ES+    G ++PP  YL  V     +H        V  GFGR G  W+A +     
Sbjct: 217 AILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK-WFAIEH--FG 273

Query: 142 IIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
           ++PD++T  K + +G+ P+  V  ++ IA +F +       TY G+P++CA A A +  +
Sbjct: 274 VVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAM 333

Query: 201 ETENLREHALDVGNQLHTP 219
           E E + E+A  +G ++  P
Sbjct: 334 EEEGIVENAARIGAEVLGP 352

Length = 451

>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 5/96 (5%)

Query: 121 VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYF 180
           VQ G GR G   +AF+  G  I PDI T+ K + NG PV A++    +  +F      + 
Sbjct: 207 VQTGMGRTG-KLYAFEHYG--IEPDIFTLAKGLANGVPVGAMLAKSSLGGAFGYG--SHG 261

Query: 181 NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           +T+GGN +S A A+A ++++ T    E AL+ GN L
Sbjct: 262 STFGGNKLSMAAASATLDIMLTAGFLEQALENGNYL 297

Length = 375

>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 18/139 (12%)

Query: 90  KRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQL 137
             P A   E +Q  GG I  P  +LR + +             +Q GFGR G   +AF+ 
Sbjct: 230 VLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK-MFAFEH 288

Query: 138 QGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVM 197
            G  IIPD+V + K +G   P+A V+  + +     + G  +  T+ GN ++ A  +A +
Sbjct: 289 AG--IIPDVVVLSKAIGGSLPLAVVVYREWLDT--WQPGA-HAGTFRGNQMAMAAGSATL 343

Query: 198 EVLETENLREHALDVGNQL 216
             ++   L EHA  +G +L
Sbjct: 344 RYIKEHRLAEHAAAMGERL 362

Length = 464

>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional

 Score = 64.1 bits (156), Expect = 5e-12
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 27/170 (15%)

Query: 65  YPDEDLGVKYAQDVQDLIEAMGR------NGKRPCAFFAESLQSCGGQIIPPANYLREVY 118
           YP+E  GV     V++ + ++ R         +  A   E +Q  GG  + P  ++  + 
Sbjct: 170 YPNELHGVS----VEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALR 225

Query: 119 K------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTK 166
                         VQ GF R G     F ++  D+ PD++T+ K +G G P++AV+   
Sbjct: 226 TLCDEHGILLIADEVQTGFARTGK---LFAMEYYDVKPDLITMAKSLGGGMPISAVVGRA 282

Query: 167 EIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           E+  +    G+    TY GNP++ A A AV++V+  E L + AL +G  L
Sbjct: 283 EVMDAPAPGGLG--GTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHL 330

Length = 421

>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 26/184 (14%)

Query: 51  PCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
           P P  YR     D    + +       ++  +  +G       AFF E +Q  GG I+PP
Sbjct: 180 PSPYPYRNPVGDD---PQAIIAASVAALRAKVAELG--ADNVAAFFCEPIQGSGGVIVPP 234

Query: 111 ANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
             +L+             V   V  GFGR G     F  + + ++PD++TV K + +G+ 
Sbjct: 235 KGWLKAMREACRELGILFVADEVITGFGRTGP---LFACEAEGVVPDLMTVAKGLTSGYV 291

Query: 158 PVAAVITTKEIAKSFQE-----TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDV 212
           P+ AV+ +  + +   +       V +  TY  +PVS AV   V+ +     L  +    
Sbjct: 292 PMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKA 351

Query: 213 GNQL 216
           G + 
Sbjct: 352 GPRF 355

Length = 459

>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases

 Score = 62.7 bits (152), Expect = 1e-11
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 21/178 (11%)

Query: 51  PCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
           P P  YR  +        +  ++Y    ++ IE +     +P A   E++Q  GG +  P
Sbjct: 169 PYPHEYRCPFGIGGEAGSNASIEY---FENFIEDVESGVDKPAAVILEAIQGEGGVVAAP 225

Query: 111 ANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHP 158
           + +L+++ +             VQ GFGR GT  +AF+  G  I PD V + K +G G P
Sbjct: 226 SEWLQKIREVTRKHDIKLILDEVQAGFGRSGT-MFAFEHAG--IEPDFVVMSKAVGGGLP 282

Query: 159 VAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           +A ++   E    +Q  G  +  T+ GN ++       +   + +NL ++A + G ++
Sbjct: 283 LAVLLIAPEFDA-WQPAG--HTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERI 337

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442

>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 60.5 bits (147), Expect = 8e-11
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 29/189 (15%)

Query: 40  TRPPVRMST-EAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAE 98
           T  P+ + T + P PD Y       +           +    + + +  +     A   E
Sbjct: 168 TYKPLLLDTIKVPSPDCYL------RPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVE 221

Query: 99  SLQSCGG--QIIPPA--NYLRE---------VYKHVQVGFGRVGTHWWAFQLQGDDIIPD 145
            L    G  ++  P     LRE         ++  + VGFGR GT    F  +   I PD
Sbjct: 222 PLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT---MFACEQAGIRPD 278

Query: 146 IVTVGKPMGNGH-PVAAVITTKEIAKSFQE-----TGVEYFNTYGGNPVSCAVANAVMEV 199
            + + K +  G+ P+AAV+TT  + ++F +         + ++Y GNP++CA A A +++
Sbjct: 279 FLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDI 338

Query: 200 LETENLREH 208
            E +N+ E+
Sbjct: 339 FEQDNVIEN 347

Length = 466

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score = 59.9 bits (146), Expect = 1e-10
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
             ++PLIGDVRG+GL +GVELV  R  K P    A  ++ R
Sbjct: 361 QEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVAR 401

Length = 447

>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional

 Score = 59.3 bits (143), Expect = 2e-10
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 21/167 (12%)

Query: 65  YPDEDLGVKYAQDVQDLIEAMGR---NGKRPCAFFAESLQSCGGQIIPPANYLREVYK-- 119
           YP +  G+   QD  D IE + +     K+  A   E +Q  GG  + P   +  + +  
Sbjct: 170 YPSDLHGIS-TQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLC 228

Query: 120 ----------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIA 169
                      VQ GF R G     F +      PD++T+ K +  G P++ V+    I 
Sbjct: 229 DEHGIVMIADEVQSGFARTGK---LFAMDHYADKPDLMTMAKSLAGGMPLSGVVGNANIM 285

Query: 170 KSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
            +    G+    TY GNP++ A A+AV+ +++ E+L E A  +G +L
Sbjct: 286 DAPAPGGLG--GTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRL 330

Length = 421

>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 43/156 (27%), Positives = 63/156 (40%), Gaps = 20/156 (12%)

Query: 77  DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANY---LRE---------VYKHVQVG 124
           D++ L EA    G    A   E +    G + P   +   LRE         ++  V  G
Sbjct: 186 DLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITG 245

Query: 125 FGRVGTH-WWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYF-NT 182
           F RV       +      + PD+ T+GK +G G P+ A     EI +     G  Y   T
Sbjct: 246 F-RVALGGAQGY----YGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGT 300

Query: 183 YGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLH 217
             GNP++ A   A +E L T E + E    +G +L 
Sbjct: 301 LSGNPLAMAAGLATLEELMTEEGVYERLDALGERLA 336

Length = 432

>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional

 Score = 58.4 bits (141), Expect = 4e-10
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 11/87 (12%)

Query: 117 VYKHVQVGFGRVGT---HWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQ 173
           V   +Q G GR GT   HW       + + PDIVT+ K +G G P+ A++   ++A++ Q
Sbjct: 225 VLDEIQCGMGRTGTLFAHW------QEQVTPDIVTLAKALGGGFPIGAMLAGPKVAETMQ 278

Query: 174 ETGVEYFNTYGGNPVSCAVANAVMEVL 200
                +  T+GGNP++ AVA   +  L
Sbjct: 279 FGA--HGTTFGGNPLAAAVARVALRKL 303

Length = 408

>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 19/134 (14%)

Query: 101 QSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVT 148
           Q  GG  I    +L+ V K             +  GFGR G     F  +   I PDI+ 
Sbjct: 215 QGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGK---LFACEHAGIAPDILC 271

Query: 149 VGKPMGNGH-PVAAVITTKEIAKSFQETGVEYF---NTYGGNPVSCAVANAVMEVLETEN 204
           +GK +  G   ++A +TT+E+A++        F    T+ GNP++CAVANA + +LE+ +
Sbjct: 272 LGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGD 331

Query: 205 LREHALDVGNQLHT 218
            ++    +  QL  
Sbjct: 332 WQQQVAAIEAQLRE 345

Length = 428

>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 58.1 bits (140), Expect = 5e-10
 Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 27/174 (15%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAES-LQSCGGQII 108
           AP PD Y  + P      ED  ++ A  +Q L E   ++    CA   E  LQ  GG  +
Sbjct: 201 APSPDAYLAE-PGQS--AEDYALQAADALQALFE---QSPGEICALILEPRLQCAGGMRM 254

Query: 109 PPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG 156
               YLR   +             +  GFGR GT    F  +   ++PD++ + K +  G
Sbjct: 255 HHPAYLRRARELCDAHGAFLIADEIATGFGRTGT---LFACEQAGVMPDLLCLSKGLTGG 311

Query: 157 H-PVAAVITTKEIAKSF----QETGVEYFNTYGGNPVSCAVANAVMEVLETENL 205
             P++AV+ T+++  +F    +E    + ++Y GNP++CA A A +++   +++
Sbjct: 312 FLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDV 365

Length = 472

>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 34/155 (21%)

Query: 83  EAMGRNGKRPCAFFAESLQSCGGQIIPPANYLRE-----------------VYKHVQVGF 125
            A  R+      F AE +Q  GG      N+ R                  ++  VQ G 
Sbjct: 217 AAFERHPHDIACFIAEPIQGEGGD-----NHFRPEFFAAMRELCDEHDALLIFDEVQTGV 271

Query: 126 GRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTK---EIAKS-FQETGVEYFN 181
           G  GT  WA+Q  G  + PDIV  GK       V  ++  +   E+  + F  +     +
Sbjct: 272 GLTGT-AWAYQQLG--VRPDIVAFGKKT----QVCGIMAGRRVDEVEDNVFAVSS-RINS 323

Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           T+GGN V    A  ++EV+E + L E+A   G  L
Sbjct: 324 TWGGNLVDMVRARRILEVIEEDGLVENAARQGEYL 358

Length = 443

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 26/40 (65%), Positives = 29/40 (72%)

Query: 2   ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
           A+YPLIGDVRGIGL  GVELVT R  K  A  EA+ V+ R
Sbjct: 370 AKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYR 409

Length = 459

>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 18/150 (12%)

Query: 79  QDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYL---REVY-KH--------VQVGFG 126
           ++ IE +    ++P A   E++Q  GG    P  +L   REV  KH        VQ GF 
Sbjct: 213 ENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFA 272

Query: 127 RVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGN 186
           R G   +AF+  G  I PDI+ + K +G G P+A +   KE   ++Q  G  +  T+ GN
Sbjct: 273 RTGK-MFAFEHAG--IEPDIIVMSKAVGGGLPLAVLGIKKEF-DAWQPGG--HTGTFRGN 326

Query: 187 PVSCAVANAVMEVLETENLREHALDVGNQL 216
            ++ A     +++L+ ENL ++A + G  L
Sbjct: 327 QLAMATGLTTLKILKEENLAQNAAERGEWL 356

Length = 459

>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 21/41 (51%), Positives = 27/41 (65%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
             ++ LIGDVRGIGL +GV+LV  R+ K  A  EA  V+ R
Sbjct: 344 KKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWR 384

Length = 443

>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQET 175
           ++  +  GFGR G     F L+   ++PDI+ +GK +  G+  ++A ITT+ IA++    
Sbjct: 245 IFDEIATGFGRTGK---LFALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSG 301

Query: 176 GVEYF---NTYGGNPVSCAVANAVMEVL 200
             + F    T+  NP++CA+A   + +L
Sbjct: 302 EAKCFMHGPTFMANPLACAIAAESIRLL 329

Length = 429

>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 144 PDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETE 203
           PDIVT+GK +GNG PV+  +T  ++ +       ++ +T+GGNP++C      + +L  E
Sbjct: 223 PDIVTMGKGIGNGVPVSLTLTNFDVERG------KHGSTFGGNPLACKAVAVTLRILRRE 276

Query: 204 NLREHA 209
            L E A
Sbjct: 277 RLVEKA 282

Length = 364

>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 8/98 (8%)

Query: 124 GFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQET----GVE 178
           GFGR G     F      + PDI+ VGK +  G    AA + T ++A+          + 
Sbjct: 246 GFGRTGE---LFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALM 302

Query: 179 YFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           +  T+  NP++CAVA+A +E++ET   R+    +  +L
Sbjct: 303 HGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAEL 340

Length = 422

>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 22/148 (14%)

Query: 84  AMGRNGKRPCAFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGTH 131
           A          F AE +Q  GG       +LR             ++  VQ G G  GT 
Sbjct: 211 AFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGT- 269

Query: 132 WWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTK---EIAKSFQETGVEYFNTYGGNPV 188
            WA+Q  G  + PDIV  GK       V  ++  +   E+A +         +T+GGN V
Sbjct: 270 AWAYQQLG--VQPDIVAFGKKT----QVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLV 323

Query: 189 SCAVANAVMEVLETENLREHALDVGNQL 216
               A  ++E++E E L ++A   G  L
Sbjct: 324 DMVRATRILEIIEEERLVDNARVQGAHL 351

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 2   ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVI 39
            ++PL+GDVRG GL +G+ELV  R  K P    A  +I
Sbjct: 334 EKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKII 371

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 3   RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
           +Y  IGDVRG+GL +GVELV  + +K P       V+  
Sbjct: 361 KYEFIGDVRGLGLMIGVELV--KDRKEPDPKLRDKVLYE 397

Length = 441

>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 19/35 (54%), Positives = 24/35 (68%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEA 35
             R+PLIG V G+GL++GVELV  R+   PAT E 
Sbjct: 886 ADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEET 920

Length = 972

>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 2   ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
           ++Y  +GDVRG GL +G+++V+ +K KT     A  +   
Sbjct: 348 SKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNY 387

Length = 445

>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQ 36
             +  +IGDVRG GL +GVE V  +K K P +    
Sbjct: 345 QQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQA 380

Length = 447

>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 19/146 (13%)

Query: 77  DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVG 124
           D++ L E     G+       E +    G + P   +L  +               V  G
Sbjct: 181 DLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTG 240

Query: 125 FGRVGTHWWAFQLQG-DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FNT 182
           F RV         Q    + PD+ T+GK +G G PV A    +EI +     G  Y   T
Sbjct: 241 F-RVALGGA----QEYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGT 295

Query: 183 YGGNPVSCAVANAVMEVLETENLREH 208
             GNP++ A   A +++L+ E +   
Sbjct: 296 LSGNPLAMAAGLATLKLLDEEGVYTE 321

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423

>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAK--SFQETGVEYF----NTYGGNPVSCAVAN 194
            I+PD+   GK +GNG  V+A+   +E  +    + T  E       T+G    + A A 
Sbjct: 241 GIVPDLSCFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAI 300

Query: 195 AVMEVLETENLREHALDVGNQL 216
           A M +   E++ E   + G +L
Sbjct: 301 ATMAIYRDEDVIERLHEQGAKL 322

Length = 431

>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 2   ARYPLIGDVRGIGLFVGVELVTCRKQKTPA 31
            R+ L+GDVRG GL + ++LV  +  + P 
Sbjct: 362 ERFELVGDVRGKGLMLALDLVADKATREPI 391

Length = 449

>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 13/29 (44%), Positives = 21/29 (72%)

Query: 2   ARYPLIGDVRGIGLFVGVELVTCRKQKTP 30
            R+P +G+VRG+G+F  +ELV  R+ + P
Sbjct: 359 ERHPSVGEVRGLGVFWALELVADRETREP 387

Length = 451

>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 2   ARYPLIGDVRGIGLFVGVELVTCRKQKTP 30
            ++P +GD+RG GLFVGVELV  R  K P
Sbjct: 346 GQHPHVGDIRGRGLFVGVELVADRATKAP 374

Length = 443

>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSE-AQHVITR 41
           +  +PL+GD+RG GL VG+ELV  ++ K PA ++    V+  
Sbjct: 360 LGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAA 401

Length = 451

>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 24/154 (15%)

Query: 69  DLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCG-GQIIPPANYLREV------YK-- 119
           D+  +   DV+ L         +  A   E L  C  G  +   +YLR +      Y   
Sbjct: 202 DVAARALADVRRLFAE---RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVH 258

Query: 120 ----HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQE 174
                + VG GR GT    F  +   + PD + + K +  G+ P++ V++   I  +F +
Sbjct: 259 LIADEIAVGCGRTGTF---FACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYD 315

Query: 175 T----GVEYFNTYGGNPVSCAVANAVMEVLETEN 204
                G  + ++Y GNP++C  A A +++   ++
Sbjct: 316 DDVTRGFLHSHSYTGNPLACRAALATLDLFAEDD 349

Length = 453

>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG-VEYFNTYGGNPVSCAVANAVMEV 199
            + PDI   GK +G G P AAV+  K I       G +    T  GNP++ A   A + +
Sbjct: 259 HVKPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINL 318

Query: 200 LETENLREH 208
              +     
Sbjct: 319 CREQGFYTQ 327

Length = 433

>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 40.4 bits (96), Expect = 4e-04
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 124 GFGRVGTHWWAFQLQG-DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FN 181
           GF RV         QG   + PD+ T+GK +G G PV A    +EI +     G  Y   
Sbjct: 242 GF-RVALGGA----QGYYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAG 296

Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
           T  GNP++ A   A +++L+     E    +  +L 
Sbjct: 297 TLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLA 332

Length = 426

>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGNPVSCAVANAVMEVL 200
           + PD+  +GK +G G P+ A    K+I +     G  Y   T  GNP S A   A +EVL
Sbjct: 259 VEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVL 318

Query: 201 ETENLREHALDVGNQL 216
           + E + E    +G  L
Sbjct: 319 QQEGVYEKLDRLGAML 334

Length = 428

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 2   ARYPLIGDVRGIGLFVGVELVTCRKQKTPA 31
            ++P+IGDVRGIGL +G+E+V       P 
Sbjct: 348 EKHPVIGDVRGIGLMIGIEIV--DPDGEPD 375

Length = 433

>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 29/155 (18%)

Query: 61  PADKYPDEDLGVKYAQDVQDLIEAM-GRNGK---RPCAFFAESLQSCGGQIIPPANYLRE 116
           P D Y   D+      D     E +   +      P A   E++Q  GG  +    +L+ 
Sbjct: 166 PYDGYLGGDV------DTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQR 219

Query: 117 VYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPM-GNGHPVAAVI 163
           + K             +Q G GR GT +++F+  G  I PDIV + K + G G P+A  +
Sbjct: 220 LEKLCRRHDILLIVDDIQAGCGRTGT-FFSFEPAG--IEPDIVCLSKSISGYGLPLALTL 276

Query: 164 TTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVME 198
              E+     + G E+  T+ GN ++   A A +E
Sbjct: 277 IKPELDV--WKPG-EHNGTFRGNNLAFVTATAALE 308

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412

>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 31/179 (17%)

Query: 60  YPADKYPDEDLGVKYAQDVQ---DLIEAMGRNGKRPCA-FFAESLQSCGGQIIPPANYLR 115
           +P+ KYP E+   + A++ Q   + +E + +   +P A    E +QS GG      ++ R
Sbjct: 216 FPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFR 275

Query: 116 EV----YKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG----HPV 159
           ++     KH        VQ G G  G  +WA +    D  PD+VT  K         H  
Sbjct: 276 KLRDITKKHNVAFIVDEVQTGVGATGK-FWAHEHWNLDDPPDMVTFSKKFQTAGYFFHDP 334

Query: 160 AAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHT 218
           A         K +++     FNT+ G+P    +   +++ ++ ++L E+   VG+ L+T
Sbjct: 335 AFRPN-----KPYRQ-----FNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYT 383

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 10/51 (19%)

Query: 2   ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEA----------QHVITRP 42
           A +PL+GDVRG+GL   +ELV  +  KTP  +            + ++ RP
Sbjct: 362 ADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRP 412

Length = 449

>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 14/65 (21%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTP------------ATSEAQHVITRPPVRMST 48
           +A +PL+G+VRG+GL   VELV  +  KTP            A +    VI+R      T
Sbjct: 365 LADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRA--MGDT 422

Query: 49  EAPCP 53
            A CP
Sbjct: 423 LAFCP 427

Length = 460

>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 26/119 (21%)

Query: 61  PADKYPDEDLGVKYAQDVQDLIEAM-GRNG---KRPCAFFAESLQSCGGQIIPPANYLRE 116
           P D Y   D+      D    +E +   +      P A   E++Q  GG  +  A +L+ 
Sbjct: 170 PYDGYFGGDV------DTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQR 223

Query: 117 V----YKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPM-GNGHPVAAV 162
           +     KH        +Q G GR GT    F  +   I PDIVT+ K + G G P+A V
Sbjct: 224 LAKLCRKHDILLIVDDIQAGCGRTGTF---FSFERAGITPDIVTLSKSISGYGLPMALV 279

Length = 425

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	100.0
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	100.0
KOG1404|consensus	442		100.0
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	100.0
PRK05965	459	hypothetical protein; Provisional	100.0
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK07482	461	hypothetical protein; Provisional	100.0
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07678	451	aminotransferase; Validated	100.0
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
KOG1403|consensus	452		100.0
PRK07481	449	hypothetical protein; Provisional	100.0
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07480	456	putative aminotransferase; Validated	100.0
PRK07483	443	hypothetical protein; Provisional	100.0
PLN02760	504	4-aminobutyrate:pyruvate transaminase	100.0
PRK07036	466	hypothetical protein; Provisional	100.0
KOG1402|consensus	427		100.0
PRK06062	451	hypothetical protein; Provisional	100.0
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06105	460	aminotransferase; Provisional	100.0
PRK06148	1013	hypothetical protein; Provisional	100.0
PRK12403	460	putative aminotransferase; Provisional	100.0
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	100.0
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	100.0
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	100.0
PRK06917	447	hypothetical protein; Provisional	100.0
PRK06149	972	hypothetical protein; Provisional	100.0
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	100.0
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	100.0
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	100.0
KOG1401|consensus	433		100.0
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	100.0
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	100.0
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06541	460	hypothetical protein; Provisional	100.0
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	100.0
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	100.0
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	100.0
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	100.0
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	100.0
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	100.0
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	100.0
PRK03715	395	argD acetylornithine transaminase protein; Provisi	100.0
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	100.0
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	100.0
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	100.0
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	100.0
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK09792	421	4-aminobutyrate transaminase; Provisional	100.0
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.98
PRK07046	453	aminotransferase; Validated	99.98
PRK08297	443	L-lysine aminotransferase; Provisional	99.97
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.97
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.97
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.97
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.97
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.97
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.97
PLN00144	382	acetylornithine transaminase	99.96
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.96
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.96
KOG1405|consensus	484		99.95
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.95
PLN02624	474	ornithine-delta-aminotransferase	99.95
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.95
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.95
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.94
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.94
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.93
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.93
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.93
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.92
PRK04260	375	acetylornithine aminotransferase; Provisional	99.91
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.91
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.9
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.89
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.89
PRK02627	396	acetylornithine aminotransferase; Provisional	99.88
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.74
PLN02822	481	serine palmitoyltransferase	99.62
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.58
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.54
PRK09064	407	5-aminolevulinate synthase; Validated	99.53
PLN02955	476	8-amino-7-oxononanoate synthase	99.5
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.49
PRK13393	406	5-aminolevulinate synthase; Provisional	99.47
PRK07505	402	hypothetical protein; Provisional	99.23
PRK07179	407	hypothetical protein; Provisional	99.12
KOG1359|consensus	417		99.12
PRK13392	410	5-aminolevulinate synthase; Provisional	99.1
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.01
KOG1360|consensus	570		98.99
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	98.98
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	98.92
PLN02483	489	serine palmitoyltransferase	98.92
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	98.86
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	98.83
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	98.66
KOG1403|consensus	452		98.64
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	98.61
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	98.59
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	98.4
KOG1357|consensus	519		98.39
cd00609	350	AAT_like Aspartate aminotransferase family. This f	98.34
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	98.18
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	97.99
KOG1404|consensus	442		97.94
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	97.85
PRK05965	459	hypothetical protein; Provisional	97.61
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	97.59
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	97.59
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	97.54
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	97.54
KOG1358|consensus	467		97.53
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	97.44
PRK13580	493	serine hydroxymethyltransferase; Provisional	97.43
PRK06108	382	aspartate aminotransferase; Provisional	97.43
PRK02731	367	histidinol-phosphate aminotransferase; Validated	97.41
PRK07682	378	hypothetical protein; Validated	97.41
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	97.38
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	97.36
PLN02721	353	threonine aldolase	97.33
PRK06225	380	aspartate aminotransferase; Provisional	97.33
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	97.3
PRK07483	443	hypothetical protein; Provisional	97.24
PLN03226	475	serine hydroxymethyltransferase; Provisional	97.24
PRK06105	460	aminotransferase; Provisional	97.23
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	97.2
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	97.18
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	97.16
PRK03321	352	putative aminotransferase; Provisional	97.16
PRK07480	456	putative aminotransferase; Validated	97.15
PRK06917	447	hypothetical protein; Provisional	97.15
TIGR01814	406	kynureninase kynureninase. This model describes ky	97.15
PRK06149	972	hypothetical protein; Provisional	97.12
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	97.11
PRK07482	461	hypothetical protein; Provisional	97.1
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	97.1
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	97.07
PRK07036	466	hypothetical protein; Provisional	97.07
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	97.07
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	97.04
PRK06062	451	hypothetical protein; Provisional	97.03
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	97.01
PRK13520	371	L-tyrosine decarboxylase; Provisional	96.99
PRK07777	387	aminotransferase; Validated	96.97
PRK06148	1013	hypothetical protein; Provisional	96.93
PRK13034	416	serine hydroxymethyltransferase; Reviewed	96.93
PRK07481	449	hypothetical protein; Provisional	96.92
PRK07678	451	aminotransferase; Validated	96.9
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	96.9
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	96.87
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	96.85
PLN02760	504	4-aminobutyrate:pyruvate transaminase	96.84
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	96.82
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	96.81
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	96.73
PRK12403	460	putative aminotransferase; Provisional	96.72
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	96.68
PTZ00094	452	serine hydroxymethyltransferase; Provisional	96.64
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	96.63
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	96.62
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	96.6
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	96.58
PRK00950	361	histidinol-phosphate aminotransferase; Validated	96.54
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	96.52
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	96.5
PRK05764	393	aspartate aminotransferase; Provisional	96.48
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	96.47
PLN00175	413	aminotransferase family protein; Provisional	96.44
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	96.44
PRK07550	386	hypothetical protein; Provisional	96.29
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	96.29
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	96.29
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	96.28
PRK06541	460	hypothetical protein; Provisional	96.23
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	96.2
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	96.18
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	96.15
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	96.1
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	96.08
PRK07324	373	transaminase; Validated	96.08
KOG1368|consensus	384		96.07
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	95.92
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	95.85
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	95.82
PRK02948	381	cysteine desulfurase; Provisional	95.78
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	95.73
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	95.73
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	95.69
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	95.68
PRK06348	384	aspartate aminotransferase; Provisional	95.66
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	95.63
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	95.61
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	95.59
PRK07309	391	aromatic amino acid aminotransferase; Validated	95.56
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	95.55
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	95.36
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	95.35
PRK02769	380	histidine decarboxylase; Provisional	95.27
PRK06460	376	hypothetical protein; Provisional	95.26
PRK06767	386	methionine gamma-lyase; Provisional	95.26
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	95.23
PLN02651	364	cysteine desulfurase	95.13
PRK07568	397	aspartate aminotransferase; Provisional	95.11
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	95.08
PRK08175	395	aminotransferase; Validated	95.06
PRK07503	403	methionine gamma-lyase; Provisional	95.03
PRK06234	400	methionine gamma-lyase; Provisional	95.03
PRK04612	408	argD acetylornithine transaminase protein; Provisi	94.97
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	94.95
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	94.95
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	94.88
PLN02242	418	methionine gamma-lyase	94.84
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	94.78
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	94.78
PRK09082	386	methionine aminotransferase; Validated	94.76
PLN02409	401	serine--glyoxylate aminotransaminase	94.76
PRK08960	387	hypothetical protein; Provisional	94.7
PRK05942	394	aspartate aminotransferase; Provisional	94.58
PRK10874	401	cysteine sulfinate desulfinase; Provisional	94.44
PRK09792	421	4-aminobutyrate transaminase; Provisional	94.43
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	94.43
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	94.41
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	94.33
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	94.22
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	94.2
PRK08912	387	hypothetical protein; Provisional	94.18
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	94.16
PRK08249	398	cystathionine gamma-synthase; Provisional	94.15
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	94.11
PRK07049	427	methionine gamma-lyase; Validated	94.11
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	94.1
PRK08361	391	aspartate aminotransferase; Provisional	94.08
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	94.0
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	93.96
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	93.87
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	93.6
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	93.56
PRK10534	333	L-threonine aldolase; Provisional	93.49
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	93.42
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	93.31
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	93.31
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	93.3
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	93.26
PRK08088	425	4-aminobutyrate aminotransferase; Validated	93.14
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	93.1
PRK00451	447	glycine dehydrogenase subunit 1; Validated	92.95
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	92.85
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	92.83
PRK04311	464	selenocysteine synthase; Provisional	92.45
PRK08574	385	cystathionine gamma-synthase; Provisional	92.45
PRK14012	404	cysteine desulfurase; Provisional	92.36
PRK06425	332	histidinol-phosphate aminotransferase; Validated	92.35
PRK07392	360	threonine-phosphate decarboxylase; Validated	92.34
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	92.3
PLN02414	993	glycine dehydrogenase (decarboxylating)	92.1
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	92.02
PRK05957	389	aspartate aminotransferase; Provisional	91.94
PRK09105	370	putative aminotransferase; Provisional	91.93
PRK07337	388	aminotransferase; Validated	91.92
PRK08636	403	aspartate aminotransferase; Provisional	91.89
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	91.71
PRK12414	384	putative aminotransferase; Provisional	91.7
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	91.64
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	91.63
PRK01533	366	histidinol-phosphate aminotransferase; Validated	91.43
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	91.32
PRK07681	399	aspartate aminotransferase; Provisional	91.27
PRK13237	460	tyrosine phenol-lyase; Provisional	91.26
PRK09148	405	aminotransferase; Validated	91.22
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	91.19
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	91.14
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	91.01
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	90.94
PLN00144	382	acetylornithine transaminase	90.93
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	90.83
PRK06207	405	aspartate aminotransferase; Provisional	90.77
PLN02509	464	cystathionine beta-lyase	90.7
PRK06290	410	aspartate aminotransferase; Provisional	90.57
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	90.53
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	90.29
PRK08068	389	transaminase; Reviewed	90.1
PRK07683	387	aminotransferase A; Validated	90.06
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	89.9
PRK08297	443	L-lysine aminotransferase; Provisional	89.69
PRK07366	388	succinyldiaminopimelate transaminase; Validated	89.54
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	89.48
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	89.35
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	89.33
PRK08776	405	cystathionine gamma-synthase; Provisional	89.32
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	89.31
PRK07811	388	cystathionine gamma-synthase; Provisional	88.8
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	88.69
PRK03715	395	argD acetylornithine transaminase protein; Provisi	88.66
PRK07908	349	hypothetical protein; Provisional	88.29
PRK07582	366	cystathionine gamma-lyase; Validated	87.62
PRK07050	394	cystathionine beta-lyase; Provisional	87.44
PRK05968	389	hypothetical protein; Provisional	87.36
PRK08045	386	cystathionine gamma-synthase; Provisional	87.33
PRK06107	402	aspartate aminotransferase; Provisional	87.27
KOG1402|consensus	427		87.0
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	86.91
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	86.56
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	86.38
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	86.08
PRK12566	954	glycine dehydrogenase; Provisional	85.53
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	85.46
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	85.04
PRK08247	366	cystathionine gamma-synthase; Reviewed	84.86
PRK04366	481	glycine dehydrogenase subunit 2; Validated	84.83
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	84.56
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	84.19
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	84.02
PLN03032	374	serine decarboxylase; Provisional	83.92
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	83.75
PRK06358	354	threonine-phosphate decarboxylase; Provisional	83.62
PRK05367	954	glycine dehydrogenase; Provisional	83.62
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	83.56
PRK07269	364	cystathionine gamma-synthase; Reviewed	83.51
PRK08056	356	threonine-phosphate decarboxylase; Provisional	83.19
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	82.74
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	82.13
PLN02368	407	alanine transaminase	82.1
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	81.38
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	81.32
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	81.27
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	81.26
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	81.12
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	81.05
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	80.91
PRK08114	395	cystathionine beta-lyase; Provisional	80.11

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=100.00  E-value=4e-48  Score=340.29  Aligned_cols=177  Identities=34%  Similarity=0.553  Sum_probs=160.9

Q ss_pred             hhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHH
Q psy6205          38 VITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREV  117 (224)
Q Consensus        38 l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~  117 (224)
                      ..+.++...++++|+|++|||++....   +++...+++.+++.+......++++||||+|||||+||+++||++||+++
T Consensus       172 ~~~~~~~~~v~~~Pyp~~yr~p~~~~~---~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l  248 (447)
T COG0160         172 AGFGPLPPGVYHVPYPNPYRCPFGIGG---EECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKAL  248 (447)
T ss_pred             cCCCCCCCCeEEecCCccccCcccCch---hhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHH
Confidence            334555566899999999999987654   67777888999997777777889999999999999999999999999999


Q ss_pred             HHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCC
Q psy6205         118 YKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGG  185 (224)
Q Consensus       118 ~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~  185 (224)
                      |++            |||||||||+ ||++||+|  |+|||+||||+||||+|+|+|++++++++ +...  .|.+||.|
T Consensus       249 ~~~~~~~gillI~DEVQtG~GRTG~-~fa~E~~g--v~PDivt~aK~ig~G~Pl~avv~r~ei~~-~~~g--~~~~Tf~G  322 (447)
T COG0160         249 RKLCREHGILLIADEVQTGFGRTGK-MFAFEHFG--VEPDIVTLAKSLGGGLPLSAVVGRAEIMD-WPPG--GHGGTFGG  322 (447)
T ss_pred             HHHHHHcCCEEEEeccccCCCcccc-chhhhhcC--CCCCEEEecccccCCCceeEEeccHHhcc-cCCc--ccCCCCCc
Confidence            999            9999999996 99999998  99999999999999999999999999999 4333  68899999


Q ss_pred             cHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         186 NPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       186 ~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ||++||||+|+||+|++++|++|++++|++|+++|++|
T Consensus       323 Npva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l  360 (447)
T COG0160         323 NPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEEL  360 (447)
T ss_pred             CHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999875

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=3.4e-45  Score=320.28  Aligned_cols=177  Identities=32%  Similarity=0.581  Sum_probs=157.8

Q ss_pred             hhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCC-CCcccCCHHHHHH
Q psy6205          38 VITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSC-GGQIIPPANYLRE  116 (224)
Q Consensus        38 l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~-~G~~~~~~~~l~~  116 (224)
                      ..+.+++.+.+++++|+.|+......+  .++. .+++++||+++...  ++++|||||+|||++. ||+++||++||++
T Consensus       166 ~~~~~ll~~~~~~~~P~~y~~~~~~~~--~~~~-~~~a~~le~~i~~~--g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~  240 (449)
T COG0161         166 AFYDPLLPEVLHLPAPYAYRRGFFGEG--DEEF-AEAADELEALILEH--GPETIAAFIVEPVVGGAGGMLVPPPGYLKR  240 (449)
T ss_pred             hhccccccCceecCCCcccccCCCCCC--hHHH-HHHHHHHHHHHHhc--CcccEEEEEecccccccCCcccCChHHHHH
Confidence            556667778889999999976654322  2444 68899999999853  6699999999998766 9999999999999


Q ss_pred             HHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcC---Ccccc
Q psy6205         117 VYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET---GVEYF  180 (224)
Q Consensus       117 ~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~---~~~~~  180 (224)
                      +|++            |.|||||||+ +|++|++|  |+|||+|+||+|+|| +||||++++++|++.+.+.   ...|+
T Consensus       241 vr~iC~ky~ILlI~DEV~tGFGRTG~-~FA~e~~g--i~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG  317 (449)
T COG0161         241 VREICDKYGILLIADEVATGFGRTGK-MFACEHAG--IVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHG  317 (449)
T ss_pred             HHHHHHHcCcEEEeecceeCCCcCch-hhhhhhcC--CCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccC
Confidence            9999            9999999997 89999998  999999999999999 5999999999999999875   25678


Q ss_pred             cCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         181 NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       181 ~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +||+|||++||||+++|++++++++++|+++++.+|.++|++
T Consensus       318 ~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~  359 (449)
T COG0161         318 HTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQA  359 (449)
T ss_pred             CccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999986

>KOG1404|consensus

Probab=100.00  E-value=8.9e-45  Score=307.04  Aligned_cols=170  Identities=43%  Similarity=0.751  Sum_probs=157.8

Q ss_pred             ceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-----
Q psy6205          46 MSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-----  120 (224)
Q Consensus        46 ~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----  120 (224)
                      ++++.++|+.||++++...  .++..+++.+++++++..  ..++.|||+|+|||||.||++.+|++||+++++.     
T Consensus       171 ~~~~~~~Pdp~r~~~~~~~--~~e~~d~~a~~l~d~i~~--~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~G  246 (442)
T KOG1404|consen  171 GVHHTMNPDPYRGIFGGSN--EEEASDRYAKELEDLILY--DGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRG  246 (442)
T ss_pred             cccccCCCCcccccCCCCc--hhhhHHHHHHHHHHHHHh--cCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcC
Confidence            5778899999999998654  467788999999999975  3678899999999999999999999999999999     


Q ss_pred             -------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHH
Q psy6205         121 -------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVA  193 (224)
Q Consensus       121 -------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa  193 (224)
                             |||||||||. ||+||+.|  |.|||+||+|+||||+|||||++++||++.+.+.. .|++||+|||++||++
T Consensus       247 gl~IaDEVqtGfGRtG~-~wgfe~h~--v~PDIvTmAKgiGnG~Pl~AVvtt~EIa~v~~~~~-~~fnTyggnP~a~avg  322 (442)
T KOG1404|consen  247 GLFIADEVQTGFGRTGH-MWGFESHG--VVPDIVTMAKGIGNGFPLGAVVTTPEIADVLNQKS-SHFNTYGGNPVACAVG  322 (442)
T ss_pred             CEEEehhhhhccccccc-cccccccC--CCccHHHHHhhccCCCcceeeecCHHHHHHHHhcc-ccccccCCCchhHHHH
Confidence                   9999999995 99999998  99999999999999999999999999999998763 3889999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         194 NAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       194 ~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|+|++|++++|+|+++.+|.||+++|.++
T Consensus       323 ~aVL~Vikee~LqE~aa~vG~yl~~~l~~l  352 (442)
T KOG1404|consen  323 LAVLKVIKEENLQENAAEVGSYLLEKLAAL  352 (442)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999875

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=7.9e-44  Score=305.93  Aligned_cols=197  Identities=30%  Similarity=0.479  Sum_probs=154.9

Q ss_pred             EEEeecCCCCCCccccchhhhccCCC--cceeecCCCccccCCCCC----CC-------C-C-ChhHHHHHHHHHHHHHH
Q psy6205          19 VELVTCRKQKTPATSEAQHVITRPPV--RMSTEAPCPDVYRGKYPA----DK-------Y-P-DEDLGVKYAQDVQDLIE   83 (224)
Q Consensus        19 ielv~~~~t~~p~~~~a~~l~~~~~~--~~~~~vp~P~~yr~~~~~----~~-------~-~-~~~~~~~~~~~l~~~~~   83 (224)
                      .|.|-+..+++++.+.+.+++.+-..  .+...+.+-+.||+..-.    ++       + | .+.....-.+|++++.+
T Consensus       100 ~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~  179 (404)
T COG4992         100 ADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEA  179 (404)
T ss_pred             ccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHH
Confidence            45566677777777665555444321  133445555666664320    00       0 0 01111122355555555


Q ss_pred             HHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccc
Q psy6205          84 AMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGK  151 (224)
Q Consensus        84 ~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K  151 (224)
                      .+.   +++||||+|||||+||+++|+++||+.+|++            ||||+||||+ ||++||+|  |+|||+|++|
T Consensus       180 ai~---~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk-~fA~e~~g--V~PDI~tlaK  253 (404)
T COG4992         180 AID---EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGK-LFAYEHYG--VEPDILTLAK  253 (404)
T ss_pred             Hhc---cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccch-HHHHHHhC--CCCCEEEeec
Confidence            442   3899999999999999999999999999999            9999999997 99999998  9999999999


Q ss_pred             cccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         152 PMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       152 ~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +||||+|+||++.++++++.+...  .|++||+|||++||++.++|+++.++++.++++++|++|+++|+++
T Consensus       254 ~LgGG~PigA~la~~~~~~~~~~G--~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l  323 (404)
T COG4992         254 ALGGGFPIGAMLATEEIASAFTPG--DHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLREL  323 (404)
T ss_pred             cccCCccceeeEEchhhhhcCCCC--cccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998888887655  8999999999999999999999999999999999999999999985

>PRK05965 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-41  Score=305.85  Aligned_cols=171  Identities=26%  Similarity=0.466  Sum_probs=149.6

Q ss_pred             cceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH----
Q psy6205          45 RMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH----  120 (224)
Q Consensus        45 ~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----  120 (224)
                      .....+++|++|++++..+.   +++...|+++++++++.  .++++|||||+|||||++|+++||++|+++||++    
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~i~~--~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~  248 (459)
T PRK05965        174 PWQHKIPSPYPYRNPVGDDP---QAIIAASVAALRAKVAE--LGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACREL  248 (459)
T ss_pred             CCCEEcCCCcccccccCCCh---HHHHHHHHHHHHHHHHh--cCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHc
Confidence            34456777888887654332   45566788899888874  2457999999999999999999999999999999    


Q ss_pred             --------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc-ccccceecHHHHHhhhcC-----CcccccCCCCc
Q psy6205         121 --------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQET-----GVEYFNTYGGN  186 (224)
Q Consensus       121 --------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~-p~~av~~~~~i~~~~~~~-----~~~~~~T~~~~  186 (224)
                              |||||||||+ ||+++++|  |+|||+|+||+||||+ |+||+++++++++.+...     ...|++||+||
T Consensus       249 gillI~DEV~tGfGRtG~-~~a~~~~g--v~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gn  325 (459)
T PRK05965        249 GILFVADEVITGFGRTGP-LFACEAEG--VVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAH  325 (459)
T ss_pred             CCEEEEechhccCccCch-hhhHhhcC--CCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCC
Confidence                    9999999997 89999998  9999999999999994 999999999999988642     12578999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         187 PVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       187 p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |++||+++++|++|+++++.++++++|++|+++|+++
T Consensus       326 pl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l  362 (459)
T PRK05965        326 PVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDAL  362 (459)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999875

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=7.4e-41  Score=300.50  Aligned_cols=169  Identities=28%  Similarity=0.445  Sum_probs=145.2

Q ss_pred             ceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-----
Q psy6205          46 MSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-----  120 (224)
Q Consensus        46 ~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----  120 (224)
                      ++.++++|+.||+++....   +++...+++.++++++....++++|||||+|||||++|+++||++|++++|++     
T Consensus       189 ~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~g  265 (464)
T PRK06938        189 GVQFLPYPYDYRCPFGLGG---EAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAG  265 (464)
T ss_pred             CcEEeCCCccccccccCch---hhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            4456677777776664321   44555678888888864322346899999999999999999999999999999     


Q ss_pred             -------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHH
Q psy6205         121 -------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVA  193 (224)
Q Consensus       121 -------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa  193 (224)
                             |||||||||+ ||+++++|  |+|||+|+||+||||+|+||+++++++ +.+...  .|++||+|||++||||
T Consensus       266 iLlI~DEV~tGfGRtG~-~~a~e~~g--v~PDiv~~gKglggG~PlsAv~~~~~~-~~~~~~--~~~~T~~gnpla~Aaa  339 (464)
T PRK06938        266 IPLIVDEIQSGFGRTGK-MFAFEHAG--IIPDVVVLSKAIGGSLPLAVVVYREWL-DTWQPG--AHAGTFRGNQMAMAAG  339 (464)
T ss_pred             CEEEEeccccCCCcCcH-HHHHHhcC--CCCCEEEeeccccCCCceEEEeehhHh-hccCCC--CCCCCCCcCHHHHHHH
Confidence                   9999999997 89999998  999999999999999999999999986 666432  5789999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         194 NAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       194 ~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++|++++++++.++++++|++|+++|+++
T Consensus       340 ~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l  369 (464)
T PRK06938        340 SATLRYIKEHRLAEHAAAMGERLREHLRQL  369 (464)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999875

>PRK07482 hypothetical protein; Provisional

Probab=100.00  E-value=1.5e-40  Score=298.62  Aligned_cols=177  Identities=28%  Similarity=0.460  Sum_probs=150.3

Q ss_pred             ccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHH
Q psy6205          40 TRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK  119 (224)
Q Consensus        40 ~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~  119 (224)
                      +.+...++.+++.|++|++++....  .+++...|+++++++++.  .++++|||||+|||||++|+++||++|+++||+
T Consensus       173 ~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~--~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~  248 (461)
T PRK07482        173 FDLPIARVLHTEAPHYYRRADAGMS--EEQFSAYCADELEELILA--EGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQA  248 (461)
T ss_pred             cCCCCCCCEEcCCCccccccccCCC--HHHHHHHHHHHHHHHHHh--cCCCcEEEEEECCccCCCCCcCCCHHHHHHHHH
Confidence            3444455667777877776542211  244556678888888753  256789999999999999999999999999999


Q ss_pred             H------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc-ccccceecHHHHHhhhcC-----Cccccc
Q psy6205         120 H------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQET-----GVEYFN  181 (224)
Q Consensus       120 ~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~-p~~av~~~~~i~~~~~~~-----~~~~~~  181 (224)
                      +            |||||||||+ +|+++++|  |+|||+|+||+||||+ |+||+++++++++.+...     ...|++
T Consensus       249 lc~~~giLlI~DEV~tGfGRtG~-~~a~~~~g--v~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~  325 (461)
T PRK07482        249 VLKKYDILLIADEVVTGFGRLGS-MFGSDHYG--IEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGW  325 (461)
T ss_pred             HHHHhCCEEEEeccccCCCcCcc-hhhHHhcC--CCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccccCC
Confidence            9            9999999997 89999998  9999999999999995 999999999999988632     224779


Q ss_pred             CCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       182 T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ||+|||++||||+++|++++++++.++++++|++|+++|+++
T Consensus       326 T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l  367 (461)
T PRK07482        326 TYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAA  367 (461)
T ss_pred             CCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999864

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.8e-40  Score=297.37  Aligned_cols=174  Identities=23%  Similarity=0.446  Sum_probs=148.0

Q ss_pred             cCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEcc-ccCCCCcccCCHHHHHHHHH
Q psy6205          41 RPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAES-LQSCGGQIIPPANYLREVYK  119 (224)
Q Consensus        41 ~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Ep-v~~~~G~~~~~~~~l~~~~~  119 (224)
                      .+...+..++++|+.+++++....   +++...++++++++++   .++++|||||+|| +||++|+++||++||++||+
T Consensus       177 ~~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~l~~~l~---~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~  250 (453)
T PRK06943        177 DPLIRHAHVVASPDARGARPGETA---ADVAARALADVRRLFA---ERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRA  250 (453)
T ss_pred             ccCCCCCEEECCCCccccccCCCH---HHHHHHHHHHHHHHHH---hCCCceEEEEEeccccccCCcccCCHHHHHHHHH
Confidence            444445556777776665543221   3445567788887776   3678999999999 59999999999999999999


Q ss_pred             H------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcC----CcccccC
Q psy6205         120 H------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET----GVEYFNT  182 (224)
Q Consensus       120 ~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~----~~~~~~T  182 (224)
                      +            |||||||||+ ||+++++|  |+|||+|+||+|||| +|+||+++++++++.+...    ...|.+|
T Consensus       251 lc~~~gillI~DEV~TG~GRtG~-~fa~~~~g--v~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T  327 (453)
T PRK06943        251 LCDRYGVHLIADEIAVGCGRTGT-FFACEQAG--VWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHS  327 (453)
T ss_pred             HHHHcCCEEEeechhhCCCCCcc-hhHHHhCC--CCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCC
Confidence            9            9999999997 89999998  999999999999999 5999999999999988632    1247799


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         183 YGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       183 ~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+|||++||+++++|++|++++++++++++|++|+++|+++
T Consensus       328 ~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l  368 (453)
T PRK06943        328 YTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPL  368 (453)
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999875

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.8e-40  Score=298.11  Aligned_cols=175  Identities=26%  Similarity=0.463  Sum_probs=151.1

Q ss_pred             ccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEcc-ccCCCCcccCCHHHHHHHH
Q psy6205          40 TRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAES-LQSCGGQIIPPANYLREVY  118 (224)
Q Consensus        40 ~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Ep-v~~~~G~~~~~~~~l~~~~  118 (224)
                      +.+...+..++|+|++|+++++...   +++...++++++++++   .++++|||||+|| |||++|+++||++|+++||
T Consensus       169 ~~p~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~l~~le~~~~---~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr  242 (466)
T PRK07030        169 YKPLLLDTIKVPSPDCYLRPEGMSW---EEHSRRMFAHMEQTLA---EHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLR  242 (466)
T ss_pred             CCccCCCCEEcCCCCccccccCCCH---HHHHHHHHHHHHHHHH---hCCCceEEEEEecccccCCCcccCCHHHHHHHH
Confidence            3344445667788888887654322   4555667788888776   3678999999999 7999999999999999999


Q ss_pred             HH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcC-----Ccccc
Q psy6205         119 KH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET-----GVEYF  180 (224)
Q Consensus       119 ~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~-----~~~~~  180 (224)
                      ++            |||||||||+ +|+++++|  |+|||+|+||+|||| +|+||+++++++++.+...     ...|+
T Consensus       243 ~lc~~~g~llI~DEV~TGfGRtG~-~~a~~~~g--v~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~  319 (466)
T PRK07030        243 EACDRYGVHLIHDEIAVGFGRTGT-MFACEQAG--IRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHS  319 (466)
T ss_pred             HHHHHcCCEEEEeehhhCcCcccc-chHHHhcC--CCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccC
Confidence            99            9999999997 89999998  999999999999999 5999999999999988532     23578


Q ss_pred             cCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         181 NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       181 ~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +||+|||++||+++++|++|++++++++++++|++|+++|+++
T Consensus       320 ~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l  362 (466)
T PRK07030        320 HSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAHL  362 (466)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999875

>PRK07678 aminotransferase; Validated

Probab=100.00  E-value=2.2e-40  Score=296.89  Aligned_cols=175  Identities=30%  Similarity=0.534  Sum_probs=151.5

Q ss_pred             cCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH
Q psy6205          41 RPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH  120 (224)
Q Consensus        41 ~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~  120 (224)
                      .+...++.+++.|++|++++....   +.+...++++++++++.  .++++|||||+|||||++|+++||++|++++|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~--~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~l  242 (451)
T PRK07678        168 EPLAPGFLHVPPPDCYRMPGIESE---DIYDLECVKEIDRVMTW--ELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEI  242 (451)
T ss_pred             CCCCCCCEEeCCCccccccccCCh---HHHHHHHHHHHHHHHHh--cCCCceEEEEEccccCCCCcccCCHHHHHHHHHH
Confidence            344556677888888887664322   34556677888888863  3568999999999999999999999999999999


Q ss_pred             ------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcCC----cccccCC
Q psy6205         121 ------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETG----VEYFNTY  183 (224)
Q Consensus       121 ------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~----~~~~~T~  183 (224)
                                  |||||||||+ +|++|++|  |+|||+|+||+|||| +|+||+++++++++.+....    ..|++||
T Consensus       243 c~~~g~llI~DEV~tGfGRtG~-~~~~~~~g--v~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~  319 (451)
T PRK07678        243 CQKHGALLISDEVICGFGRTGK-AFGFMNYG--VKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTF  319 (451)
T ss_pred             HHHcCCEEEEeehhhcCCcCch-hHHHHhcC--CCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCC
Confidence                        9999999997 89999998  999999999999999 69999999999999886431    2478999


Q ss_pred             CCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         184 GGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       184 ~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|||++||+++++|+++++++++++++++|++|+++|+++
T Consensus       320 ~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~  359 (451)
T PRK07678        320 GGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEE  359 (451)
T ss_pred             CcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999753

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=1.9e-40  Score=297.66  Aligned_cols=173  Identities=28%  Similarity=0.426  Sum_probs=147.6

Q ss_pred             CCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-
Q psy6205          42 PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-  120 (224)
Q Consensus        42 ~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-  120 (224)
                      +...++.++|+|++|+++++...   +++.+.+.+.+++.++.+...+++|||||+|||||++|+++||++||+.+|++ 
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc  255 (459)
T PRK06931        179 GLMPGVQFMPYPHEYRCPLGIGG---EAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVT  255 (459)
T ss_pred             CCCCCcEEeCCCccccccccCCc---hhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHH
Confidence            33455677888888888875322   34445555566666654333567899999999999999999999999999999 


Q ss_pred             -----------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHH
Q psy6205         121 -----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVS  189 (224)
Q Consensus       121 -----------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~  189 (224)
                                 |||||||||+ ||+++++|  |+|||+|+||+||||+|+|++++++++ +.+...  .|++||+|||++
T Consensus       256 ~~~g~LlI~DEV~tGfGRtG~-~~a~~~~g--v~PDivt~gK~l~gG~Pi~av~~~~~~-~~~~~~--~~~~T~~gnpla  329 (459)
T PRK06931        256 QKHGILLIVDEVQAGFARTGK-MFAFEHAG--IEPDIIVMSKAVGGGLPLAVLGIKKEF-DAWQPG--GHTGTFRGNQLA  329 (459)
T ss_pred             HHcCCEEEEecchhcCCcCch-HHHhhhcC--CCCCEEEecccccCCcceeeeeeHHHH-hhccCC--CCCCCCCCCHHH
Confidence                       9999999997 89999998  999999999999999999999998875 766432  578999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         190 CAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       190 ~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ||+|+++|++|++++++++++++|++|+++|+++
T Consensus       330 ~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l  363 (459)
T PRK06931        330 MATGLTTLKILKEENLAQNAAERGEWLKAQLAEL  363 (459)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999875

>KOG1403|consensus

Probab=100.00  E-value=3.1e-41  Score=277.51  Aligned_cols=175  Identities=63%  Similarity=1.046  Sum_probs=163.1

Q ss_pred             eeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------
Q psy6205          47 STEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------  120 (224)
Q Consensus        47 ~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------  120 (224)
                      +|..|+|+.||+.+....++..+....|.++++++++.....+..|||+|.|..|+-||.+.||.+|++.+.+.      
T Consensus       165 VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGG  244 (452)
T KOG1403|consen  165 VHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGG  244 (452)
T ss_pred             eEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCC
Confidence            67789999999999877665556667889999999987766788999999999999999999999999999998      


Q ss_pred             ------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHH
Q psy6205         121 ------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVAN  194 (224)
Q Consensus       121 ------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~  194 (224)
                            ||+||||.|+++|++|.++  +.|||+||||.+|||+|+++|+++++|+++|...+..+++||+|||++||+++
T Consensus       245 v~IaDEVQvGFGRvG~hyWafq~y~--fiPDIVtmgKpmGNGhPVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~l  322 (452)
T KOG1403|consen  245 VCIADEVQVGFGRVGSHYWAFQTYN--FIPDIVTMGKPMGNGHPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGL  322 (452)
T ss_pred             eEEeehhhhcccccchhhhhhhhhc--cccchheecccCCCCCeeeEEeccHHHHHHhccccceehhccCCCchhHHHHH
Confidence                  9999999999999999998  99999999999999999999999999999998877889999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         195 AVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       195 a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++|+++++++|+++++++|++|...|+++
T Consensus       323 aVm~v~e~E~Lq~ha~~vG~~L~~lL~~~  351 (452)
T KOG1403|consen  323 AVMRVCEDENLQEHAQQVGEKLEVLLRRL  351 (452)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988764

>PRK07481 hypothetical protein; Provisional

Probab=100.00  E-value=7.8e-40  Score=293.12  Aligned_cols=176  Identities=30%  Similarity=0.502  Sum_probs=151.9

Q ss_pred             cCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH
Q psy6205          41 RPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH  120 (224)
Q Consensus        41 ~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~  120 (224)
                      .+...++.+++.|++|+++|+..+  .+.+...+++++|+++..  .++++|||||+|||||++|+++||++|++.+|++
T Consensus       167 ~~~~~g~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~le~~i~~--~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~l  242 (449)
T PRK07481        167 EPLLPGCFHVETPWLYRNPFTEQD--PEELARICARLLEREIAF--QGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREV  242 (449)
T ss_pred             CCCCCCCEEeCCCcccccccCCCC--HHHHHHHHHHHHHHHHHh--cCCCcEEEEEEecccCCcCCccCCHHHHHHHHHH
Confidence            444556777888888888776321  134445667888888763  3568999999999999999999999999999999


Q ss_pred             ------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcC-----CcccccC
Q psy6205         121 ------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET-----GVEYFNT  182 (224)
Q Consensus       121 ------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~-----~~~~~~T  182 (224)
                                  |||||||||+ +|+++++|  |+|||+|+||+|||| +|+||+++++++++.+...     ...|++|
T Consensus       243 c~~~g~llI~DEV~tGfGRtG~-~~a~~~~g--v~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T  319 (449)
T PRK07481        243 CDRHGILLIADEVVTGFGRTGS-WFGSRGWG--VKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYT  319 (449)
T ss_pred             HHHcCCEEEEeehhhCcCcCch-hhHhhhcC--CCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCC
Confidence                        9999999997 89999998  999999999999999 5999999999999988642     1257799


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         183 YGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       183 ~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+|||++||+++++|++|++++++++++++|++|+++|+++
T Consensus       320 ~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l  360 (449)
T PRK07481        320 YSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPL  360 (449)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999864

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=8.5e-40  Score=293.93  Aligned_cols=174  Identities=28%  Similarity=0.514  Sum_probs=148.8

Q ss_pred             ccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEcc-ccCCCCcccCCHHHHHHHH
Q psy6205          40 TRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAES-LQSCGGQIIPPANYLREVY  118 (224)
Q Consensus        40 ~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Ep-v~~~~G~~~~~~~~l~~~~  118 (224)
                      +.+...++.++|.|+.||+++....   +++...+++.++++++.   ++++|||||+|| +||++|+++||++|+++||
T Consensus       191 ~~p~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr  264 (472)
T PRK08742        191 YAPLLLESLFAPSPDAYLAEPGQSA---EDYALQAADALQALFEQ---SPGEICALILEPRLQCAGGMRMHHPAYLRRAR  264 (472)
T ss_pred             cCCCCCCCEEeCCCCccccccCCCH---HHHHHHHHHHHHHHHHh---CCCceEEEEEccccccCCCcccCCHHHHHHHH
Confidence            3444445667788888887654322   45556678888887762   568999999999 6999999999999999999


Q ss_pred             HH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc-ccccceecHHHHHhhhcC----Cccccc
Q psy6205         119 KH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQET----GVEYFN  181 (224)
Q Consensus       119 ~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~-p~~av~~~~~i~~~~~~~----~~~~~~  181 (224)
                      ++            |||||||||+ ||+++++|  |+|||+|+||+||||+ |+||+++++++++.+...    ...|++
T Consensus       265 ~lc~~~gillI~DEV~TGfGRtG~-~~a~e~~g--v~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~  341 (472)
T PRK08742        265 ELCDAHGAFLIADEIATGFGRTGT-LFACEQAG--VMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSH  341 (472)
T ss_pred             HHHHHcCCEEEEechhhCCCCCcc-chHHHhcC--CCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCC
Confidence            99            9999999997 89999998  9999999999999995 999999999999987532    234779


Q ss_pred             CCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       182 T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ||+|||++|||++++|++++++++.++++++|++|++.++.
T Consensus       342 T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~  382 (472)
T PRK08742        342 SYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQ  382 (472)
T ss_pred             CCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999977764

>PRK07480 putative aminotransferase; Validated

Probab=100.00  E-value=1.8e-39  Score=291.10  Aligned_cols=172  Identities=31%  Similarity=0.474  Sum_probs=147.2

Q ss_pred             CcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH---
Q psy6205          44 VRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH---  120 (224)
Q Consensus        44 ~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~---  120 (224)
                      .....++++|++||+++..+.   +++.+.|++++++.+..  .++++|||||+|||||++|+++||++|+++||++   
T Consensus       177 ~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~l~~~~~~--~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~  251 (456)
T PRK07480        177 IPGIVHIDQPYWFGEGGDMTP---EEFGLAAARQLEAKILE--LGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRK  251 (456)
T ss_pred             CCCCeecCCCcccccccCCCh---HHHHHHHHHHHHHHHHh--cCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence            345566788888887654322   44556667888765542  3568999999999999999999999999999999   


Q ss_pred             ---------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc-ccccceecHHHHHhhhc--CCcccccCCCCcHH
Q psy6205         121 ---------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQE--TGVEYFNTYGGNPV  188 (224)
Q Consensus       121 ---------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~-p~~av~~~~~i~~~~~~--~~~~~~~T~~~~p~  188 (224)
                               |||||||||+ +|+++++|  ++|||+|+||+||||+ |+||+++++++++.+..  ....|++||+|||+
T Consensus       252 ~g~llI~DEV~tGfGRtG~-~~a~~~~g--v~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl  328 (456)
T PRK07480        252 YDILLVADEVICGFGRTGE-WFGSQHFG--IKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPV  328 (456)
T ss_pred             cCCEEEEechhhCCCcCcc-hhhhhhcC--CCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHH
Confidence                     9999999997 89999998  9999999999999995 99999999999998842  22357799999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHhhhhc
Q psy6205         189 SCAVANAVMEVLETENLREHA-LDVGNQLHTPKKEN  223 (224)
Q Consensus       189 ~~aaa~a~l~~~~~~~l~~~~-~~~g~~l~~~l~~l  223 (224)
                      +||+++++|++|+++++++++ +++|++|+++|+++
T Consensus       329 ~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l  364 (456)
T PRK07480        329 AAAVALANLRILRDEGIVERVRDDTGPYLQKRLREL  364 (456)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999 69999999999864

>PRK07483 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-39  Score=290.89  Aligned_cols=175  Identities=27%  Similarity=0.466  Sum_probs=147.7

Q ss_pred             CCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccC-CCCcccCCHHHHHHHHHH
Q psy6205          42 PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQS-CGGQIIPPANYLREVYKH  120 (224)
Q Consensus        42 ~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~-~~G~~~~~~~~l~~~~~~  120 (224)
                      +...+..+++.|++|+++....  ..+++...|++++++++..  .++++|||||+||||| ++|+++|+++||+.+|++
T Consensus       154 p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~--~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~l  229 (443)
T PRK07483        154 PLLIEAHHVSPCYAYREQRAGE--SDEAYGQRLADELEAKILE--LGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREV  229 (443)
T ss_pred             CCCCCCEEeCCCccccccccCC--CHHHHHHHHHHHHHHHHHh--cCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHH
Confidence            3344455666776677653221  1245566778888887753  3568999999999999 589999999999999999


Q ss_pred             ------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc-ccccceecHHHHHhhhcCC--cccccCCCC
Q psy6205         121 ------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETG--VEYFNTYGG  185 (224)
Q Consensus       121 ------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~-p~~av~~~~~i~~~~~~~~--~~~~~T~~~  185 (224)
                                  |||||||||+ ||+++++|  |+|||+|+||+||||+ |+|++++++++++.+....  ..|++||+|
T Consensus       230 c~~~gillI~DEV~tGfGRtG~-~~a~~~~g--v~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~g  306 (443)
T PRK07483        230 CDRYGVLLILDEVMCGMGRTGT-LFACEEDG--VAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLG  306 (443)
T ss_pred             HHHhCCEEEEecceeCcccCcH-HHHHhhcC--CCCCeeeehhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCCCC
Confidence                        9999999997 89999998  9999999999999995 9999999999999886432  247799999


Q ss_pred             cHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         186 NPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       186 ~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ||++||+++++|++|+++++.++++++|++|+++|+++
T Consensus       307 npl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l  344 (443)
T PRK07483        307 HATACAAALAVQRVIAEDGLLANVRARGEQLRARLRER  344 (443)
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999863

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=100.00  E-value=2.7e-39  Score=292.55  Aligned_cols=172  Identities=28%  Similarity=0.539  Sum_probs=147.4

Q ss_pred             cceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH----
Q psy6205          45 RMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH----  120 (224)
Q Consensus        45 ~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----  120 (224)
                      ..+.++++|++|+++.+...  .+++...++++|++++..  .+++++||||+|||||++|+++||++|+++||++    
T Consensus       218 ~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~le~~l~~--~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~  293 (504)
T PLN02760        218 PFVLHTDCPHYWRFHLPGET--EEEFSTRLADNLENLILK--EGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKY  293 (504)
T ss_pred             CCcEEeCCCcccccCCCCCc--HHHHHHHHHHHHHHHHHh--cCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc
Confidence            34556777777776433211  234455677889888753  3567899999999999999999999999999999    


Q ss_pred             --------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcC-----CcccccCCCCc
Q psy6205         121 --------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET-----GVEYFNTYGGN  186 (224)
Q Consensus       121 --------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~-----~~~~~~T~~~~  186 (224)
                              |+|||||||+ +|+++++|  |+|||+||||+|||| +|+||+++++++++.+...     ...|++||+||
T Consensus       294 g~lLI~DEV~TGfGRtG~-~~a~e~~g--v~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gn  370 (504)
T PLN02760        294 DILFIADEVICAFGRLGT-MFGCDKYN--IKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGH  370 (504)
T ss_pred             CCEEEecchhhCCcccch-hhHHHhcC--CCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCC
Confidence                    9999999997 89999998  999999999999999 5999999999999998642     13578999999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         187 PVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       187 p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |++||+++++|++|++++++++++++|++|+++|+++
T Consensus       371 Pl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l  407 (504)
T PLN02760        371 PVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAF  407 (504)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999864

>PRK07036 hypothetical protein; Provisional

Probab=100.00  E-value=2.8e-39  Score=290.54  Aligned_cols=172  Identities=30%  Similarity=0.499  Sum_probs=148.1

Q ss_pred             CcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH---
Q psy6205          44 VRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH---  120 (224)
Q Consensus        44 ~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~---  120 (224)
                      ...+.+++.|++|+++.+.+.   +++.+.+++++++.+..  .++++|||||+|||||++|+++||++|++++|++   
T Consensus       178 ~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~i~~--~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~  252 (466)
T PRK07036        178 SDLVHHLSSPNPYRRPAGMSE---AAFCDFLVDEFEDKILS--LGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRR  252 (466)
T ss_pred             CCCcEEecCCcccccccCCCh---HHHHHHHHHHHHHHHHH--cCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHH
Confidence            344566778888877654322   45556677888887763  3678999999999999999999999999999999   


Q ss_pred             ---------HHhCCccccccchhhh-hcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcC---C--cccccCCC
Q psy6205         121 ---------VQVGFGRVGTHWWAFQ-LQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET---G--VEYFNTYG  184 (224)
Q Consensus       121 ---------v~tG~GrtG~~~~~~~-~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~---~--~~~~~T~~  184 (224)
                               |||||||||+ +|+++ ++|  ++|||+|+||+|||| +|+||+++++++++.+...   .  ..|++||+
T Consensus       253 ~g~llI~DEV~tGfGRtG~-~~~~~~~~g--v~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~  329 (466)
T PRK07036        253 YDILYISDEVVTGFGRLGH-FFASEAVFG--IQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYS  329 (466)
T ss_pred             cCCEEEEeechhCCCcCch-hhhhhhhcC--CCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCC
Confidence                     9999999997 89998 788  999999999999999 5999999999999988632   1  24678999


Q ss_pred             CcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         185 GNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       185 ~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |||++||+++++|++|++++++++++++|++|+++|+++
T Consensus       330 gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l  368 (466)
T PRK07036        330 GHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASL  368 (466)
T ss_pred             CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999764

>KOG1402|consensus

Probab=100.00  E-value=2.1e-39  Score=269.26  Aligned_cols=139  Identities=35%  Similarity=0.600  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      +++|+..++     ...+||||+|||||++|++.||++||+++|++            ||||+||||+ ||+++|..  +
T Consensus       196 ~eale~~l~-----~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk-~la~d~en--v  267 (427)
T KOG1402|consen  196 AEALEVALK-----SPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK-LLACDYEN--V  267 (427)
T ss_pred             HHHHHHHhc-----CCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc-EEEeehhh--c
Confidence            455555554     26999999999999999999999999999999            9999999997 89999997  9


Q ss_pred             CCchhcccccccCC-cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +|||+.+||+|+|| +|+||+++++++|..+.+.  .|++||+|||++|++|.|+||+|.+++|.+|++.+|..|+.+|+
T Consensus       268 ~PDivilgKalSGG~~Pvsavl~~~~im~~~~pg--eHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~  345 (427)
T KOG1402|consen  268 RPDIVILGKALSGGVYPVSAVLADDDIMLNIKPG--EHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLN  345 (427)
T ss_pred             CCCeEEEeccccCCeeeeEEEEecHHHHhccCCC--ccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999 7999999999999997665  79999999999999999999999999999999999999999998


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       346 ~l  347 (427)
T KOG1402|consen  346 KL  347 (427)
T ss_pred             hc
Confidence            75

>PRK06062 hypothetical protein; Provisional

Probab=100.00  E-value=4.3e-39  Score=288.39  Aligned_cols=171  Identities=29%  Similarity=0.513  Sum_probs=145.6

Q ss_pred             ceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-----
Q psy6205          46 MSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-----  120 (224)
Q Consensus        46 ~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----  120 (224)
                      ++..++.|++|++++....  .+++..+++++++++++.  .++++|||||+|||||++|+++||++||+++|++     
T Consensus       173 ~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~le~~l~~--~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g  248 (451)
T PRK06062        173 GVVHFFGPFLYRSEFHATT--EEEECERALAHLERVIEL--EGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHG  248 (451)
T ss_pred             CCEEeCCCCccccccCCCC--hHHHHHHHHHHHHHHHHh--cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcC
Confidence            3445566666766653211  134556678888888863  2457899999999999999999999999999999     


Q ss_pred             -------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc-ccccceecHHHHHhhhcCCcccccCCCCcHHHHHH
Q psy6205         121 -------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAV  192 (224)
Q Consensus       121 -------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~-p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aa  192 (224)
                             |+|||||||+ +|+++++|  |+|||+||||+||||+ |+||+++++++++.+.+....+++||+|||++||+
T Consensus       249 ~lLI~DEV~tGfGRtG~-~~a~~~~g--v~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aa  325 (451)
T PRK06062        249 IVLIADEVMAGFGRTGK-WFAIEHFG--VVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAA  325 (451)
T ss_pred             CEEEeeccccCCCcCcH-HHHHHhcC--CCCCeeeechhhhcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHH
Confidence                   9999999997 89999998  9999999999999995 99999999999999864433577899999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHH-HHHHHhhhhc
Q psy6205         193 ANAVMEVLETENLREHALDVG-NQLHTPKKEN  223 (224)
Q Consensus       193 a~a~l~~~~~~~l~~~~~~~g-~~l~~~l~~l  223 (224)
                      ++++|++|+++++.++++++| ++|+++|+++
T Consensus       326 a~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l  357 (451)
T PRK06062        326 AVATINAMEEEGIVENAARIGAEVLGPGLREL  357 (451)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999 6999998864

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=6.2e-39  Score=288.00  Aligned_cols=175  Identities=31%  Similarity=0.499  Sum_probs=150.4

Q ss_pred             ccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEcc-ccCCCCcccCCHHHHHHHH
Q psy6205          40 TRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAES-LQSCGGQIIPPANYLREVY  118 (224)
Q Consensus        40 ~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Ep-v~~~~G~~~~~~~~l~~~~  118 (224)
                      +.+...+..++|+|+.|++++..+.   +++.+.++++++++++.   ++++|||||+|| |||++|+++||++|++.+|
T Consensus       178 ~~~~~~~~~~~p~p~~~~~~~~~~~---~~~~~~~~~~l~~~l~~---~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr  251 (460)
T PRK06916        178 YSSLLFEAIKMPYPYTYRSPYGNDK---AEIVKKHLEELEELLKE---KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLR  251 (460)
T ss_pred             cCCCCCCCEEeCCCcccccccCCCh---HHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcccCCHHHHHHHH
Confidence            3444445667788888887654332   45556678888887763   678999999999 7999999999999999999


Q ss_pred             HH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcC-----Ccccc
Q psy6205         119 KH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET-----GVEYF  180 (224)
Q Consensus       119 ~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~-----~~~~~  180 (224)
                      ++            |||||||||+ +|+++++|  |+|||+|+||+|||| +|+||+++++++++.+...     ...|.
T Consensus       252 ~lc~~~g~llI~DEV~TG~GRtG~-~~a~~~~g--v~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~  328 (460)
T PRK06916        252 NLCTKYNVLFITDEVATGFGRTGK-MFACEHEN--VTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHG  328 (460)
T ss_pred             HHHHHcCCEEEeechhhCCCcCch-hhHHHhcC--CCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccC
Confidence            99            9999999997 89999998  999999999999999 5999999999999987531     12467


Q ss_pred             cCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         181 NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       181 ~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +||+|||++||+++++|+++++++++++++++|++|++.|+++
T Consensus       329 ~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l  371 (460)
T PRK06916        329 HSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDL  371 (460)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999999999875

>PRK06105 aminotransferase; Provisional

Probab=100.00  E-value=6.2e-39  Score=288.00  Aligned_cols=177  Identities=27%  Similarity=0.487  Sum_probs=151.0

Q ss_pred             ccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHH
Q psy6205          40 TRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK  119 (224)
Q Consensus        40 ~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~  119 (224)
                      +.+...+..++++|++|++......  .+.+.+.|++++|+++..  .++++|||||+|||||++|+++||++|++.+|+
T Consensus       171 ~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~le~~~~~--~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~  246 (460)
T PRK06105        171 FDLPLDRILHTGCPHYYRFGLPGES--EEAFATRLANELEALILA--EGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQA  246 (460)
T ss_pred             cCCCCCCCEEcCCCcccccccCCCC--hHHHHHHHHHHHHHHHHH--cCCCceEEEEEccccCCCCCccCCHHHHHHHHH
Confidence            3344455667788887775432211  245566788999988863  356799999999999999999999999999999


Q ss_pred             H------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcCC-----ccccc
Q psy6205         120 H------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETG-----VEYFN  181 (224)
Q Consensus       120 ~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~-----~~~~~  181 (224)
                      +            |||||||||+ +|+++++|  ++|||+|+||+|||| +|+|++++++++++.+....     ..|.+
T Consensus       247 lc~~~~~llI~DEv~tG~GRtG~-~f~~~~~~--v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~  323 (460)
T PRK06105        247 VLRKYDILLVADEVICGFGRTGN-MFGCETFG--IKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGF  323 (460)
T ss_pred             HHHHcCCeEEEeccccCCCcCch-hhhHHhcC--CCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCC
Confidence            9            9999999997 89999998  999999999999999 69999999999999886431     23679


Q ss_pred             CCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       182 T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ||+|||++||+++++|++|++++++++++++|++|+++|+++
T Consensus       324 T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l  365 (460)
T PRK06105        324 TASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRAL  365 (460)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999875

>PRK06148 hypothetical protein; Provisional

Probab=100.00  E-value=6.2e-39  Score=309.98  Aligned_cols=171  Identities=53%  Similarity=0.958  Sum_probs=150.8

Q ss_pred             eeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------
Q psy6205          47 STEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------  120 (224)
Q Consensus        47 ~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------  120 (224)
                      +..++.|++||++|+...   .++...+++++++.++.+..+++++||||+|||||++|+++||++|++.+|++      
T Consensus       743 ~~~~~~p~~~~~~~~~~~---~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~  819 (1013)
T PRK06148        743 VEVAEVPDSYRGPERWPD---AEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGG  819 (1013)
T ss_pred             ceEcCCCCccccCCCCCh---hhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCC
Confidence            445667777888776432   44566778888888876555668899999999999999999999999999999      


Q ss_pred             ------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHH
Q psy6205         121 ------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVAN  194 (224)
Q Consensus       121 ------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~  194 (224)
                            |||||||||++||+++++|  |+|||+||||+||||+|+||+++++++++.+... ..|++||+|||++|||++
T Consensus       820 llI~DEVqtGfGRtG~~~~a~e~~g--v~PDivt~gK~lggG~Plgav~~~~ei~~~~~~g-~~~~~Tf~gnpla~aaa~  896 (1013)
T PRK06148        820 VCIADEVQVGFGRVGSHWWAFETQG--VVPDIVTMGKPIGNGHPMGAVVTTREIADSFDNG-MEYFNTFGGNPVSCAIGL  896 (1013)
T ss_pred             EEEEEecccCCCCCCCcchhhhhcC--CCcceeeecccccCCcceEEEEEcHHHHhhccCC-CccccCCCCCHHHHHHHH
Confidence                  9999999995479999998  9999999999999999999999999999998643 247799999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         195 AVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       195 a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++|++|++++++++++++|++|+++|+++
T Consensus       897 a~L~~i~~e~l~~~~~~~G~~l~~~L~~l  925 (1013)
T PRK06148        897 AVLDIIEDEDLQRNALEIGNYLLAGLREL  925 (1013)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999875

>PRK12403 putative aminotransferase; Provisional

Probab=100.00  E-value=1.1e-38  Score=286.45  Aligned_cols=172  Identities=29%  Similarity=0.475  Sum_probs=146.8

Q ss_pred             CcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH---
Q psy6205          44 VRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH---  120 (224)
Q Consensus        44 ~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~---  120 (224)
                      ..+..++|.|++|++++....   .++.+.+++++++.+..  .+++++||||+|||||++|+++||++|+++||++   
T Consensus       180 ~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~le~~~~~--~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~  254 (460)
T PRK12403        180 IPDVAHIDEPYWYANGGELTP---AEFGRRAALQLEEKILE--LGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQ  254 (460)
T ss_pred             CCCCEEeCCCcccccccCCCh---HHHHHHHHHHHHHHHHH--hCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence            344667778888876543322   44556677888766643  2567999999999999999999999999999999   


Q ss_pred             ---------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc-ccccceecHHHHHhhhcCC--cccccCCCCcHH
Q psy6205         121 ---------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETG--VEYFNTYGGNPV  188 (224)
Q Consensus       121 ---------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~-p~~av~~~~~i~~~~~~~~--~~~~~T~~~~p~  188 (224)
                               |+|||||||+ +|+++++|  ++|||+|+||+||||+ |+||+++++++++.+....  ..|++||+|||+
T Consensus       255 ~g~lLI~DEV~tGfGRtG~-~~a~e~~g--v~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl  331 (460)
T PRK12403        255 YDVLLCADEVIGGFGRTGE-WFAHEHFG--FEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPV  331 (460)
T ss_pred             cCCEEEEeccccCCCcCch-hhhhhhcC--CCCCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHH
Confidence                     9999999997 89999998  9999999999999995 9999999999999986432  236789999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHhhhhc
Q psy6205         189 SCAVANAVMEVLETENLREHAL-DVGNQLHTPKKEN  223 (224)
Q Consensus       189 ~~aaa~a~l~~~~~~~l~~~~~-~~g~~l~~~l~~l  223 (224)
                      +||+++++|++|++++++++++ ++|++|+++|+++
T Consensus       332 ~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l  367 (460)
T PRK12403        332 AAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREV  367 (460)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999996 9999999999764

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=100.00  E-value=3.1e-38  Score=281.63  Aligned_cols=144  Identities=31%  Similarity=0.525  Sum_probs=129.4

Q ss_pred             HHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCC
Q psy6205          77 DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        77 ~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~p  144 (224)
                      ++++.++.+..+++++||||+|||||++|+++||++||++++++            |||||||||+ ||+++++|  |+|
T Consensus       210 ~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~g--v~P  286 (442)
T TIGR03372       210 AMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGK-MFACEHEG--VQP  286 (442)
T ss_pred             HHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcccc-chhhhhcC--CCC
Confidence            34444443333568899999999999999999999999999999            9999999997 89999998  999


Q ss_pred             chhcccccccCC-cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         145 DIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       145 Di~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ||+||||+|||| +|+||+++++++++.+......|++||+|||++|||++++|++|+++++.++++++|++|+++|+++
T Consensus       287 Divt~gK~lg~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l  366 (442)
T TIGR03372       287 DILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQL  366 (442)
T ss_pred             CeeeehhhhcCCcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999 6999999999999988543346789999999999999999999999999999999999999999875

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=6.9e-38  Score=280.83  Aligned_cols=176  Identities=30%  Similarity=0.491  Sum_probs=147.3

Q ss_pred             CCCcceeecCCCccccCCCCCCCC-CChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH
Q psy6205          42 PPVRMSTEAPCPDVYRGKYPADKY-PDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH  120 (224)
Q Consensus        42 ~~~~~~~~vp~P~~yr~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~  120 (224)
                      +..+++.++|+|+.|++++..+.+ +.++..+.+++.+++.+.....++++|||||+|||||++|+++||++|+++++++
T Consensus       172 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~l  251 (457)
T PRK05639        172 PLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKL  251 (457)
T ss_pred             CCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence            334456667778777766542211 1234455677888877643212468999999999999999999999999999999


Q ss_pred             ------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHH
Q psy6205         121 ------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPV  188 (224)
Q Consensus       121 ------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~  188 (224)
                                  |+|||||||+ +|+++++|  ++|||+||||+||||+|+|++++++++++.. ..  .+++||++||+
T Consensus       252 c~~~g~llI~DEv~tG~GrtG~-~~a~~~~g--v~PDiv~~gK~l~gG~pi~av~~~~~i~~~~-~~--~~~~T~~g~p~  325 (457)
T PRK05639        252 LDEHGILLVMDEVQTGIGRTGK-WFASEWFE--VKPDLIIFGKGVASGMGLSGVIGRKELMDLT-SG--SALLTPAANPV  325 (457)
T ss_pred             HHHcCCEEEEechhhccCcCch-HHHHHhcC--CCCCEEEechhhcCCCcceeEEehHHHHhhc-CC--CcccCCCcCHH
Confidence                        9999999997 89999998  9999999999999999999999999999932 22  46789999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         189 SCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       189 ~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|||++++|+++++++++++++++|++|+++|+++
T Consensus       326 ~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l  360 (457)
T PRK05639        326 ISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEM  360 (457)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999874

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=100.00  E-value=3.6e-38  Score=273.28  Aligned_cols=147  Identities=41%  Similarity=0.677  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhh
Q psy6205          70 LGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQL  137 (224)
Q Consensus        70 ~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~  137 (224)
                      +...+++++++++...  +.++|||||+|||||++|+++++++|++.|+++            |||||||||+ +|++++
T Consensus       158 ~~~~~~~~~~~~~~~~--~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~-~~a~~~  234 (339)
T PF00202_consen  158 EEQACLNALEELIAAL--NADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK-FFASEH  234 (339)
T ss_dssp             HHHHHHHHHHHHHHHH--HGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS-SSGHHH
T ss_pred             hHHHHHHHHHHHHHhh--cCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCC-ccceec
Confidence            3445566676666543  467999999999999999999999999999999            9999999997 899999


Q ss_pred             cCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy6205         138 QGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH  217 (224)
Q Consensus       138 ~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~  217 (224)
                      +|  ++|||+|+||+|+||+|+|++++++++++.+...  .+.+||++||++|++++++|++++++++.++++++|++|+
T Consensus       235 ~g--v~PDiv~~gK~l~gG~p~sav~~~~~i~~~~~~~--~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~  310 (339)
T PF00202_consen  235 YG--VDPDIVTFGKGLGGGLPISAVLGSEEIMEAFQPG--SHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLR  310 (339)
T ss_dssp             HT--SSSSEEEEEGGGGTTSSEEEEEEEHHHHTTSCTT--SSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             cc--ccCcccccccchhhhhhcccccccchhhcccccc--ccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHH
Confidence            98  9999999999999999999999999999988654  5889999999999999999999999999999999999999


Q ss_pred             Hhhhhc
Q psy6205         218 TPKKEN  223 (224)
Q Consensus       218 ~~l~~l  223 (224)
                      ++|+++
T Consensus       311 ~~L~~l  316 (339)
T PF00202_consen  311 EGLREL  316 (339)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999865

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK06917 hypothetical protein; Provisional

Probab=100.00  E-value=1e-37  Score=279.22  Aligned_cols=169  Identities=28%  Similarity=0.460  Sum_probs=142.9

Q ss_pred             eeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCC-CCcccCCHHHHHHHHHH-----
Q psy6205          47 STEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSC-GGQIIPPANYLREVYKH-----  120 (224)
Q Consensus        47 ~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~-~G~~~~~~~~l~~~~~~-----  120 (224)
                      ...++.|++++++++.+.   +.+...+++.++++++.  ..+++|||||+||+||+ ||+++||++|++.||++     
T Consensus       160 ~~~~~~p~~~~~~~~~~~---~~~~~~~~~~le~~i~~--~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g  234 (447)
T PRK06917        160 YPTISAPYCYRCPVQKVY---PTCQLACATELETAIER--IGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYD  234 (447)
T ss_pred             CeEeCCCcccccccCCCh---HHHHHHHHHHHHHHHHh--cCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcC
Confidence            344556666665544322   34455677888887764  23468999999999995 78999999999999999     


Q ss_pred             -------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc-ccccceecHHHHHhhhcCC--cccccCCCCcHHHH
Q psy6205         121 -------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETG--VEYFNTYGGNPVSC  190 (224)
Q Consensus       121 -------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~-p~~av~~~~~i~~~~~~~~--~~~~~T~~~~p~~~  190 (224)
                             |+|||||||+ +|+++++|  |+|||+|+||+||||+ |+||+++++++++.+....  ..|++||+|||++|
T Consensus       235 ~llI~DEv~tGfGRtG~-~~a~~~~g--v~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~  311 (447)
T PRK06917        235 ILFIADEVMTGLGRTGA-MFAMEHWG--VEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSA  311 (447)
T ss_pred             CEEEEechhhCcCcccc-hhhHHhcC--CCCCEEEeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHH
Confidence                   9999999997 89999998  9999999999999995 9999999999999986432  23568999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         191 AVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       191 aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+++++|++|++++++++++++|++|+++|+++
T Consensus       312 aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l  344 (447)
T PRK06917        312 ATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKV  344 (447)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999875

>PRK06149 hypothetical protein; Provisional

Probab=100.00  E-value=1.9e-37  Score=299.29  Aligned_cols=170  Identities=39%  Similarity=0.775  Sum_probs=146.6

Q ss_pred             ceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-----
Q psy6205          46 MSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-----  120 (224)
Q Consensus        46 ~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----  120 (224)
                      .++.++.|+.||++|+.+     +...+|.+++++.++.+..+++++||||+|||||++|+++||++|+++++++     
T Consensus       704 ~v~~~~~p~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g  778 (972)
T PRK06149        704 WVHPVESPNTYRGRFRGA-----DSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARG  778 (972)
T ss_pred             CeEEeCCCcccCCcCCCc-----ccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcC
Confidence            345567788888776532     1233556666666665444678999999999999999999999999999999     


Q ss_pred             -------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHH
Q psy6205         121 -------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVA  193 (224)
Q Consensus       121 -------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa  193 (224)
                             |||||||||++||++|++|  |+|||+||||+||||+|+||+++++++++.+.... .+++||+|||++||++
T Consensus       779 ~llI~DEV~tGfGRtG~~~~a~e~~g--v~PDivt~gK~lg~G~Pl~av~~~~~i~~~~~~~~-~~~sT~~gnP~~~aaa  855 (972)
T PRK06149        779 GVCIADEVQVGYGRLGHYFWGFEQQG--VVPDIITMAKGMGNGHPLGAVITRREIAEALEAEG-YFFSSTGGSPVSCRIG  855 (972)
T ss_pred             CEEEEEeehhcCCccCccchhhhhcC--CCCCEEEecccccCCeeeEEEEEcHHHHhhhccCC-cccCCCCCCHHHHHHH
Confidence                   9999999997578999998  99999999999999999999999999999986532 4668999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         194 NAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       194 ~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++|++|+++++.++++++|++|+++|+++
T Consensus       856 la~L~~i~~e~l~~~~~~~G~~l~~~L~~l  885 (972)
T PRK06149        856 MAVLDVLREEKLQENARRVGDHLKARLEAL  885 (972)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999875

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=2.2e-37  Score=277.54  Aligned_cols=146  Identities=32%  Similarity=0.551  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      ++++++.++....+++++||||+|||||++|+++||++||++++++            |||||||||+ +|+++++|  |
T Consensus       215 ~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~g--v  291 (459)
T PRK11522        215 IEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGK-MFACEHEN--V  291 (459)
T ss_pred             HHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccch-hhhhhccC--C
Confidence            3556666654434567899999999999999999999999999999            9999999997 89999998  9


Q ss_pred             CCchhcccccccCC-cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +|||+||||+|||| +|+||+++++++++.+......|++||+|||++||+++++|++|+++++.++++++|++|+++|+
T Consensus       292 ~PDivt~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~  371 (459)
T PRK11522        292 QPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFR  371 (459)
T ss_pred             CCCEEEechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            99999999999999 69999999999999875433467899999999999999999999999999999999999999998


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       372 ~l  373 (459)
T PRK11522        372 QL  373 (459)
T ss_pred             HH
Confidence            75

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=4.8e-37  Score=275.64  Aligned_cols=169  Identities=31%  Similarity=0.493  Sum_probs=144.0

Q ss_pred             cCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH
Q psy6205          41 RPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH  120 (224)
Q Consensus        41 ~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~  120 (224)
                      .+...++.+++.|++|+++++..    +.+...|+++++++++.    .+++||||+|||||+ |+++||++|++++|++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~----~~~vAavIvEPv~g~-g~~~~~~~yl~~lr~l  257 (459)
T PRK06082        187 GPLMAGVERIPPAVSYRGAFPDA----DGSDVHYADYLEYVIEK----EGGIGAFIAEAVRNT-DVQVPSKAYWKRVREI  257 (459)
T ss_pred             CCCCCCCEEeCCCcccccccCCh----hHHHHHHHHHHHHHHhc----CCCEEEEEECCccCC-CCcCCCHHHHHHHHHH
Confidence            34445566778888888776432    34456678888888762    358999999999998 5788999999999999


Q ss_pred             ------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcCCcccccCCCCcH
Q psy6205         121 ------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNP  187 (224)
Q Consensus       121 ------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p  187 (224)
                                  |+|||||||+ ||+++++|  ++|||+|+||+|||| +|+|++++++++++.+. ....+ +||+|||
T Consensus       258 c~~~g~llI~DEV~tG~GRtG~-~fa~e~~g--v~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~-~~~~~-~T~~gnp  332 (459)
T PRK06082        258 CDKHNVLLIIDEIPNGMGRTGE-WFTHQAYG--IEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQ-ISLGH-YTHEKSP  332 (459)
T ss_pred             HHHcCCEEEEechhhCCCccch-hhHhHhhC--CCCCEEEecccccCCCCcceEEEEcHHHHhhcc-CCCCC-CCCCcCH
Confidence                        9999999997 89999998  999999999999999 59999999999987653 22234 8999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         188 VSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       188 ~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++||+++++|+++++++++++++++|++|+++|+++
T Consensus       333 l~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l  368 (459)
T PRK06082        333 LGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEM  368 (459)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999864

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=100.00  E-value=4.4e-37  Score=275.05  Aligned_cols=171  Identities=26%  Similarity=0.462  Sum_probs=144.4

Q ss_pred             CcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH---
Q psy6205          44 VRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH---  120 (224)
Q Consensus        44 ~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~---  120 (224)
                      ..++.++++|++++++++...   +.+.+.+.+.+++.++.+....+++||||+||+||++|+++||++|+++++++   
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~  238 (442)
T TIGR00709       162 MPGVQFMPYPHEYRCPFGIGG---EAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRK  238 (442)
T ss_pred             CCCcEEeCCCccccccccCCc---hhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence            344556677777777765322   33444555556666654444567899999999999999999999999999999   


Q ss_pred             ---------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHH
Q psy6205         121 ---------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCA  191 (224)
Q Consensus       121 ---------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~a  191 (224)
                               |||||||||+ +|+++++|  ++|||+|+||+||||+|+|+++++++ ++.+..  ..|.+||+|||++||
T Consensus       239 ~g~llI~DEV~tGfGRtG~-~~a~~~~g--v~PDiv~~gK~l~~G~Pigav~~~~~-~~~~~~--~~~~~T~~gnpla~a  312 (442)
T TIGR00709       239 HDIKLILDEVQAGFGRSGT-MFAFEHAG--IEPDFVVMSKAVGGGLPLAVLLIAPE-FDAWQP--AGHTGTFRGNQLAMV  312 (442)
T ss_pred             cCCEEEEeccccCCCCCCc-hhHHHHcC--CCCcEEEEcccccCCcccEEEEEchH-HhccCC--CcCCCCCCcCHHHHH
Confidence                     9999999997 89999998  99999999999999999999999999 566643  257799999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         192 VANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       192 aa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ||+++|++++++++.++++++|++|+++|+++
T Consensus       313 aa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l  344 (442)
T TIGR00709       313 TGTEALNYWKDDNLAQNAQERGERITSFLDDM  344 (442)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999864

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>KOG1401|consensus

Probab=100.00  E-value=1e-37  Score=265.70  Aligned_cols=199  Identities=25%  Similarity=0.390  Sum_probs=159.2

Q ss_pred             EEEEeecCCCCCCccccchhhhccCCC-----cceeecCCCccccCCCCC-----------CCCC--ChhHHHHH---HH
Q psy6205          18 GVELVTCRKQKTPATSEAQHVITRPPV-----RMSTEAPCPDVYRGKYPA-----------DKYP--DEDLGVKY---AQ   76 (224)
Q Consensus        18 gielv~~~~t~~p~~~~a~~l~~~~~~-----~~~~~vp~P~~yr~~~~~-----------~~~~--~~~~~~~~---~~   76 (224)
                      .+|.|.+.++++++...+.+.+++...     ..+.++.+-++||+..-.           .+.+  .++.....   ..
T Consensus       115 ~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t  194 (433)
T KOG1401|consen  115 SAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDST  194 (433)
T ss_pred             CccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHH
Confidence            567777777888777665554444321     123356667778764310           0000  12222222   34


Q ss_pred             HHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCC
Q psy6205          77 DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        77 ~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~p  144 (224)
                      +++++++   .+.++|||||+|||||+||++++.|+|++.||+.            |||||||+|. .|++++++  ++|
T Consensus       195 ~l~k~~~---~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~-~~a~e~~~--~~P  268 (433)
T KOG1401|consen  195 ALEKLFE---SHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGY-GWAQEYFG--VTP  268 (433)
T ss_pred             HHHHHHH---hCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccch-HHHHHHhC--cCC
Confidence            5555555   5788999999999999999999999999999999            9999999997 89999998  999


Q ss_pred             chhcccccccCCcccccceecHHHHHhhhcCC-cccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         145 DIVTVGKPMGNGHPVAAVITTKEIAKSFQETG-VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       145 Di~~~~K~l~~G~p~~av~~~~~i~~~~~~~~-~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ||.|+||.||||+|+||++++++|++.+.... ..|++||+|||++|+++..+|+.+.++...+++.++++.|+++|.+
T Consensus       269 DI~t~aK~L~gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e  347 (433)
T KOG1401|consen  269 DITTVAKPLGGGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDE  347 (433)
T ss_pred             cceeehhhccCCceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998653 4568999999999999999999999999999999999999999875

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=100.00  E-value=1.1e-36  Score=272.22  Aligned_cols=172  Identities=27%  Similarity=0.453  Sum_probs=145.5

Q ss_pred             CcceeecCCCc-cccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--
Q psy6205          44 VRMSTEAPCPD-VYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--  120 (224)
Q Consensus        44 ~~~~~~vp~P~-~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--  120 (224)
                      .....++|.|+ ++++++....   +++...++++|+++++.  .+++++||||+|||||++|+++|+++|++++|++  
T Consensus       172 ~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~le~~l~~--~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~  246 (442)
T PRK13360        172 LPGVDHLPHTLDLARNAFSKGQ---PEHGAELADELERLVTL--HDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICD  246 (442)
T ss_pred             CCCCEEeCCCchhhccccCCCh---HHHHHHHHHHHHHHHHh--cCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence            33444556553 4555543322   45556778888888864  2457899999999999999999999999999999  


Q ss_pred             ----------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcCC-----cccccCCC
Q psy6205         121 ----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETG-----VEYFNTYG  184 (224)
Q Consensus       121 ----------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~-----~~~~~T~~  184 (224)
                                |+|||||||+ +|+++++|  ++|||+|+||+|+|| +|+||+++++++++.+....     ..+.+||+
T Consensus       247 ~~g~llI~DEv~tG~GrtG~-~~a~~~~g--v~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~  323 (442)
T PRK13360        247 KHGILLIFDEVITGFGRLGA-PFAAQYFG--VTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYS  323 (442)
T ss_pred             HcCCEEEEechhhCCCCCcc-chhhhhcC--CCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCC
Confidence                      9999999997 89999998  999999999999999 79999999999999886431     23668999


Q ss_pred             CcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         185 GNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       185 ~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +||++||+++++|++|+++++.++++++|++|+++|+++
T Consensus       324 g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l  362 (442)
T PRK13360        324 GHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSL  362 (442)
T ss_pred             CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999864

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=6.5e-37  Score=274.07  Aligned_cols=130  Identities=33%  Similarity=0.595  Sum_probs=123.6

Q ss_pred             CCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC
Q psy6205          89 GKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG  156 (224)
Q Consensus        89 ~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G  156 (224)
                      +++|||||+||+||++|+++|+++||+++|++            |+|||||||+ +|+++++|  ++|||+|+||+||||
T Consensus       217 ~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~-~fa~~~~g--v~PDiv~~gK~l~~G  293 (443)
T PRK06058        217 ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGA-WFACEHEG--IVPDLITTAKGIAGG  293 (443)
T ss_pred             CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChh-hhHHHhcC--CCCCEEEEcccccCC
Confidence            57899999999999999999999999999999            9999999997 89999998  999999999999999


Q ss_pred             cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|+|++++++++++.+...  .+.+||+|||++||||+++|++++++++.++++++|++|+++|+++
T Consensus       294 ~Pi~av~~~~~i~~~~~~~--~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l  358 (443)
T PRK06058        294 LPLSAVTGRAEIMDAPHPG--GLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRAL  358 (443)
T ss_pred             CccEEEEEcHHHHhhccCC--CCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988644  5789999999999999999999999999999999999999999874

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=100.00  E-value=1.3e-36  Score=271.90  Aligned_cols=174  Identities=26%  Similarity=0.447  Sum_probs=147.1

Q ss_pred             CCCcceeecCCCc-cccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH
Q psy6205          42 PPVRMSTEAPCPD-VYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH  120 (224)
Q Consensus        42 ~~~~~~~~vp~P~-~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~  120 (224)
                      +...+..++++|+ ++++++....   +++.+.++++++++++..  +.+++||||+|||||++|++.||++|+++++++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~i~~~--~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~l  247 (445)
T PRK09221        173 GLLPGVDHLPHTLDLPENAFSKGQ---PEHGAELADDLERLVALH--DASTIAAVIVEPMAGSAGVLVPPKGYLQRLREI  247 (445)
T ss_pred             CCCCCCeEeCCCccccccccCCCh---HHHHHHHHHHHHHHHHhc--CCCcEEEEEEecccCCCCcccCCHHHHHHHHHH
Confidence            3334455566665 5555544322   455566788888888642  347999999999999999999999999999999


Q ss_pred             ------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcC-----CcccccC
Q psy6205         121 ------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET-----GVEYFNT  182 (224)
Q Consensus       121 ------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~-----~~~~~~T  182 (224)
                                  |+|||||||+ +|+++++|  ++|||+|+||+|+|| +|+|++++++++++.+...     ...|.+|
T Consensus       248 c~~~g~llI~DEV~tG~GRtG~-~~~~~~~g--v~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T  324 (445)
T PRK09221        248 CDKHGILLIFDEVITGFGRLGA-AFAAERFG--VTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYT  324 (445)
T ss_pred             HHHcCCEEEEeehhhCCCcCch-hhHHHhcC--CCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccC
Confidence                        9999999997 89999998  999999999999999 7999999999999988542     1236689


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         183 YGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       183 ~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |++||++||+++++|++++++++.++++++|++|+++|+++
T Consensus       325 ~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l  365 (445)
T PRK09221        325 YSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSL  365 (445)
T ss_pred             CCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999875

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=2.6e-36  Score=270.14  Aligned_cols=173  Identities=29%  Similarity=0.545  Sum_probs=148.7

Q ss_pred             CCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-
Q psy6205          42 PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-  120 (224)
Q Consensus        42 ~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-  120 (224)
                      +...++.++|+|+.|++++....   ++....++++++++++.. ..++++||||+||+||++|+++||++|+++++++ 
T Consensus       162 ~~~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc  237 (445)
T PRK08593        162 PLLPGFVHIPFPDKYRGMYEEPD---ANFVEEYLAPLKEMFEKY-LPADEVACIVIETIQGDGGLLEPVPGYFEALYKFC  237 (445)
T ss_pred             CCCCCcEEeCCCccccccccCCc---HHHHHHHHHHHHHHHHhh-cCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHH
Confidence            33445666777887777654332   445666778888777542 1357899999999999999999999999999999 


Q ss_pred             -----------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHH
Q psy6205         121 -----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVS  189 (224)
Q Consensus       121 -----------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~  189 (224)
                                 |+|||||||+ +|+++++|  ++|||+|+||++|||+|+|++++++++++.+...  .+.+||++||++
T Consensus       238 ~~~g~llI~DEv~tg~GrtG~-~~a~~~~g--v~pDi~t~gK~l~~G~p~gav~~~~~i~~~~~~~--~~~~T~~~~pl~  312 (445)
T PRK08593        238 REHGILFAVDDIQQGLGRTGK-WSSISHFN--ITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEAP--AHLFTTGANPVS  312 (445)
T ss_pred             HHcCCEEEEechhhCCCcCch-HHHHHhcC--CCCCEeeecccccCCcccEEEEEcHHHHhhhccC--CCCCCCCCCHHH
Confidence                       9999999997 88999998  9999999999999999999999999999988533  567899999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         190 CAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       190 ~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ||+++++|+++++++++++++++|++|+++|+++
T Consensus       313 ~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l  346 (445)
T PRK08593        313 CAAALATIDMIEDESLLQRSAEKGEYARKRFDQW  346 (445)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999864

>PRK06541 hypothetical protein; Provisional

Probab=100.00  E-value=4.4e-36  Score=269.49  Aligned_cols=176  Identities=30%  Similarity=0.472  Sum_probs=151.6

Q ss_pred             ccCCCcceeecCCCccccCC-CCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHH
Q psy6205          40 TRPPVRMSTEAPCPDVYRGK-YPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVY  118 (224)
Q Consensus        40 ~~~~~~~~~~vp~P~~yr~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~  118 (224)
                      +.+...++.++|.|++|+++ ++.+.   +++...|++.++++++.  .+++++||||+|||||++|++++|++|+++++
T Consensus       174 ~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~--~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~  248 (460)
T PRK06541        174 FEPLVPGGFRVPNTNFYRAPELGDDP---EAFGRWAADRIEEAIEF--EGPDTVAAVFLEPVQNAGGCFPPPPGYFERVR  248 (460)
T ss_pred             cCCCCCCcEEeCCCccccccccCCCH---HHHHHHHHHHHHHHHHh--cCCCCEEEEEECCccCCCCCccCCHHHHHHHH
Confidence            34445567778888888876 43221   45566778888888864  24679999999999999999999999999999


Q ss_pred             HH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc-ccccceecHHHHHhhhcCC--cccccCC
Q psy6205         119 KH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETG--VEYFNTY  183 (224)
Q Consensus       119 ~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~-p~~av~~~~~i~~~~~~~~--~~~~~T~  183 (224)
                      ++            |+|||||||+ +|+++++|  ++|||+|+||+||||+ |+|++++++++++.+....  ..|.+||
T Consensus       249 ~lc~~~g~llI~DEV~tGfGR~G~-~~a~~~~g--v~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~  325 (460)
T PRK06541        249 EICDRYDVLLVSDEVICAFGRLGE-MFGCERFG--YVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTF  325 (460)
T ss_pred             HHHHHcCCEEEEechhhCCCcCch-hhhhhhcC--CCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCccccCCCC
Confidence            99            9999999997 89999998  9999999999999996 9999999999999886431  2356899


Q ss_pred             CCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         184 GGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       184 ~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++||++||+++++|++++++++.++++++|++|+++|+++
T Consensus       326 ~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l  365 (460)
T PRK06541        326 GGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKL  365 (460)
T ss_pred             CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999875

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.8e-35  Score=263.45  Aligned_cols=148  Identities=27%  Similarity=0.463  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHHHHccCCCCceEEEEccc-cCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhh
Q psy6205          70 LGVKYAQDVQDLIEAMGRNGKRPCAFFAESL-QSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQ  136 (224)
Q Consensus        70 ~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv-~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~  136 (224)
                      +.+.+++.|++.++.   ++++|||||+||+ ||++|+++||++|+++++++            |+|||||||+ +|+++
T Consensus       188 ~~~~~l~~l~~~i~~---~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~-~~a~~  263 (429)
T PRK06173        188 WNDEAIEPLQDLLEQ---KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGK-LFALE  263 (429)
T ss_pred             HHHHHHHHHHHHHHh---CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCc-chHHH
Confidence            344567778777752   5679999999997 99999999999999999999            9999999997 89999


Q ss_pred             hcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcC---CcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy6205         137 LQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET---GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDV  212 (224)
Q Consensus       137 ~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~---~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~  212 (224)
                      ++|  ++|||+||||+|+|| +|+|++++++++++.+.+.   ...|++||++||++||+++++|++++++++.++++++
T Consensus       264 ~~g--v~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~  341 (429)
T PRK06173        264 HAG--VVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRI  341 (429)
T ss_pred             hcC--CCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            998  999999999999999 5999999999999988642   1357789999999999999999999999999999999


Q ss_pred             HHHHHHhhhhc
Q psy6205         213 GNQLHTPKKEN  223 (224)
Q Consensus       213 g~~l~~~l~~l  223 (224)
                      |++|+++|+++
T Consensus       342 g~~l~~~L~~~  352 (429)
T PRK06173        342 EAQLKQELAPA  352 (429)
T ss_pred             HHHHHHHHHHh
Confidence            99999999854

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=1.7e-35  Score=278.52  Aligned_cols=149  Identities=21%  Similarity=0.357  Sum_probs=128.6

Q ss_pred             hHHHHHHHHHHHHHHHHc--cCCCCceEEEEccc-cCCCCcccCCHHHHHHHHHH------------HHhCCccccccch
Q psy6205          69 DLGVKYAQDVQDLIEAMG--RNGKRPCAFFAESL-QSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWW  133 (224)
Q Consensus        69 ~~~~~~~~~l~~~~~~~~--~~~~~iaavi~Epv-~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~  133 (224)
                      ++.+.|++++++.++...  .++++|||||+||+ ||+||+++|+++|++.+|++            |+|||||||+ +|
T Consensus       560 ~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~-~f  638 (817)
T PLN02974        560 PLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGV-ES  638 (817)
T ss_pred             hhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccc-hh
Confidence            455677888888886432  24678999999995 99999999999999999999            9999999997 89


Q ss_pred             hhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcC----CcccccCCCCcHHHHHHHHHHHHHHhhh----h
Q psy6205         134 AFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET----GVEYFNTYGGNPVSCAVANAVMEVLETE----N  204 (224)
Q Consensus       134 ~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~----~~~~~~T~~~~p~~~aaa~a~l~~~~~~----~  204 (224)
                      +++++|  |+|||+|+||+|||| +|+||++++++|++.|...    ...|++||+|||++||||+++|++|+++    +
T Consensus       639 a~e~~g--v~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~  716 (817)
T PLN02974        639 AWELLG--CKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPN  716 (817)
T ss_pred             hHHhcC--CCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHH
Confidence            999998  999999999999999 5999999999999999632    2347899999999999999999999987    5


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy6205         205 LREHALDVGNQLHTPK  220 (224)
Q Consensus       205 l~~~~~~~g~~l~~~l  220 (224)
                      +.++.++++++|.++|
T Consensus       717 l~~~~~~l~~~l~~~l  732 (817)
T PLN02974        717 LIPPGSRLRELWDEEL  732 (817)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555666667777666

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=7.7e-35  Score=258.98  Aligned_cols=144  Identities=28%  Similarity=0.442  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHHccCCCCceEEEEccc-cCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhh
Q psy6205          71 GVKYAQDVQDLIEAMGRNGKRPCAFFAESL-QSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQL  137 (224)
Q Consensus        71 ~~~~~~~l~~~~~~~~~~~~~iaavi~Epv-~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~  137 (224)
                      .+.|++.+++++.      +++||||+||+ ||++|+++|+++|++++|++            |+|||||||+ +|++++
T Consensus       186 ~~~~~~~~~~~~~------~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~  258 (422)
T PRK05630        186 ISEYLRSLELLID------ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGE-LFATLA  258 (422)
T ss_pred             HHHHHHHHHHHHh------hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCch-hhHHHh
Confidence            4556677776663      58999999996 99999999999999999999            9999999997 899999


Q ss_pred             cCCCCCCchhcccccccCC-cccccceecHHHHHhhhcC----CcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy6205         138 QGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET----GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDV  212 (224)
Q Consensus       138 ~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~----~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~  212 (224)
                      +|  |+|||+||||+|||| +|+||+++++++++.+...    ...|++||+|||++||+++++|++++++++.++++++
T Consensus       259 ~g--v~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~  336 (422)
T PRK05630        259 AG--VTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRI  336 (422)
T ss_pred             cC--CCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            98  999999999999999 5999999999999988632    1256799999999999999999999999999999999


Q ss_pred             HHHHHHhhhhc
Q psy6205         213 GNQLHTPKKEN  223 (224)
Q Consensus       213 g~~l~~~l~~l  223 (224)
                      +++|+++|+++
T Consensus       337 g~~l~~~L~~l  347 (422)
T PRK05630        337 EAELIAGLSPL  347 (422)
T ss_pred             HHHHHHHHHHh
Confidence            99999988754

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=100.00  E-value=7e-35  Score=259.47  Aligned_cols=145  Identities=30%  Similarity=0.492  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHccCCCCceEEEEccc-cCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcC
Q psy6205          73 KYAQDVQDLIEAMGRNGKRPCAFFAESL-QSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQG  139 (224)
Q Consensus        73 ~~~~~l~~~~~~~~~~~~~iaavi~Epv-~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g  139 (224)
                      .+++++++.++   ..+++++|||+||+ ||++|+++|+++||++++++            |+|||||||+ +|+++++|
T Consensus       189 ~d~~~l~~~l~---~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~-~fa~~~~g  264 (428)
T PRK07986        189 RDIAPFARLMA---AHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGK-LFACEHAG  264 (428)
T ss_pred             HHHHHHHHHHH---hCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCC-eeeecccC
Confidence            34566666665   35678999999996 99999999999999999999            9999999997 89999998


Q ss_pred             CCCCCchhcccccccCC-cccccceecHHHHHhhhcCC---cccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy6205         140 DDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETG---VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQ  215 (224)
Q Consensus       140 ~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~---~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~  215 (224)
                        ++|||+|+||+|+|| +|+||+++++++++.+....   ..|++||+|||++||+++++|+++++++++++++++|++
T Consensus       265 --v~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~  342 (428)
T PRK07986        265 --IAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQ  342 (428)
T ss_pred             --CCCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence              999999999999999 59999999999999986531   236799999999999999999999999999999999999


Q ss_pred             HHHhhhhc
Q psy6205         216 LHTPKKEN  223 (224)
Q Consensus       216 l~~~l~~l  223 (224)
                      |+++|+++
T Consensus       343 l~~~l~~l  350 (428)
T PRK07986        343 LREELAPL  350 (428)
T ss_pred             HHHHHHHH
Confidence            99999875

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=9.6e-35  Score=259.05  Aligned_cols=142  Identities=27%  Similarity=0.358  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      ++.+++.++   ++++++||||+|||||++|+++||++|+++++++            |+||| |||. +|+++++|  +
T Consensus       187 ~~~l~~~l~---~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~-~~a~~~~g--v  259 (428)
T PRK12389        187 IEALKEALD---KWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMY-GGAQDLLG--V  259 (428)
T ss_pred             HHHHHHHHH---hcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCc-chhhHHhC--C
Confidence            455666665   3567899999999999999999999999999999            99999 9996 78899998  9


Q ss_pred             CCchhcccccccCCcccccceecHHHHHhhhcC-CcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQET-GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~-~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +|||+|+||+||||+|+||+++++++++.+... ...+++||+|||++|||++++|++|++++++++++++|++|+++|+
T Consensus       260 ~PDivt~gK~lggG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~  339 (428)
T PRK12389        260 EPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGIL  339 (428)
T ss_pred             CCCeeeechhhcCCCceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998532 2357789999999999999999999999999999999999999998


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       340 ~l  341 (428)
T PRK12389        340 EA  341 (428)
T ss_pred             HH
Confidence            64

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=3.2e-34  Score=256.19  Aligned_cols=171  Identities=32%  Similarity=0.528  Sum_probs=145.1

Q ss_pred             CcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH---
Q psy6205          44 VRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH---  120 (224)
Q Consensus        44 ~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~---  120 (224)
                      ..++.++|+|++++++....   .++....++++++++++.. ..++++||||+|||||++|+++|+++|+++++++   
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~-~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~  239 (433)
T PRK08117        164 LGSVYQAPYPYCDRCPKGED---PEVCFLECLRDLESLFKHQ-VTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDR  239 (433)
T ss_pred             CCCcEEeCCCccccccccCc---hhHHHHHHHHHHHHHHHhc-cCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHH
Confidence            34455666777666554321   1334445677888877642 1457899999999999999999999999999999   


Q ss_pred             ---------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHH
Q psy6205         121 ---------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCA  191 (224)
Q Consensus       121 ---------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~a  191 (224)
                               |+|||||+|+ +|+++++|  ++|||+|+||+||||+|+|++++++++++.+...  .+.+||++||++|+
T Consensus       240 ~g~llI~DEv~tG~gr~G~-~~~~~~~g--v~pDi~t~sK~lg~G~pigav~~~~~i~~~~~~~--~~~~T~~~np~~~a  314 (433)
T PRK08117        240 HGILLIFDEVQTGFGRTGE-WFAAQTFG--VVPDIMTIAKGIASGLPLSAVVASKELMEQWPLG--SHGTTFGGNPVACA  314 (433)
T ss_pred             cCCEEEEecchhccCcccc-chhHhhcC--CCCCEeehhhhccCCCcceeEEEcHHHHhhccCC--CCCCCCCcCHHHHH
Confidence                     9999999997 78889998  9999999999999999999999999999988543  57899999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         192 VANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       192 aa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++++|++++++++++++++++++|+++|+++
T Consensus       315 aa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l  346 (433)
T PRK08117        315 AALATLEVIKEEKLLDNANEMGAYALERLEVL  346 (433)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            99999999988899999999999999999865

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=2.7e-34  Score=256.84  Aligned_cols=172  Identities=34%  Similarity=0.536  Sum_probs=145.1

Q ss_pred             CCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHH-HHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH
Q psy6205          42 PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQD-LIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH  120 (224)
Q Consensus        42 ~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~  120 (224)
                      +...++.++++|+.|+++++...  .+++.+.+++.+++ +++.. .+++++||||+|||||++|+++|+++|+++++++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~le~~~~~~~-~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l  250 (441)
T PRK05769        174 PLMPGVIHVPYPNPYRNPWGIEN--PEECGNAVLDFIEDYLFKKL-VPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKL  250 (441)
T ss_pred             CCCCCeEEeCCCccccccccCCc--hHHHHHHHHHHHHHHHHhhc-cCCCceEEEEECcccCCCCCcCCCHHHHHHHHHH
Confidence            33445667777777777665221  24455667788887 44321 2467899999999999999999999999999999


Q ss_pred             ------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHH
Q psy6205         121 ------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPV  188 (224)
Q Consensus       121 ------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~  188 (224)
                                  |+|||||||+ +|+++++|  +.|||+|+||+++||+|+|++++++++++.+ .  ..+.+||++||+
T Consensus       251 ~~~~g~lli~DEv~tG~gr~G~-~~a~~~~g--v~pDivt~~K~l~~G~p~gav~~~~~i~~~~-~--~~~~~T~~g~p~  324 (441)
T PRK05769        251 ADKYGILLIDDEVQTGMGRTGK-MFAIEHFG--VEPDIITLAKAIAGGLPLGAVIGRAELMFLP-P--GSHANTFGGNPV  324 (441)
T ss_pred             HHHcCCEEEEechhhCCCcccc-eehhhccC--CCCCEEEEcccccCCcccEEEEEehhhhhcC-C--CCCCCCCCcCHH
Confidence                        9999999997 88999998  9999999999999999999999999998644 2  257899999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         189 SCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       189 ~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|++++++|+++++ +++++++++|++|+++|+++
T Consensus       325 ~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l  358 (441)
T PRK05769        325 AAAAALATLEELEE-GLLENAQKLGEYLRKELKEL  358 (441)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999 99999999999999999864

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=100.00  E-value=3.4e-35  Score=264.02  Aligned_cols=198  Identities=23%  Similarity=0.269  Sum_probs=157.7

Q ss_pred             EEEEeecCCCCCCccccchhhhccCCCcceeecCCCccccCCCCC----------------C-CCCC---hhHH-H--HH
Q psy6205          18 GVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPA----------------D-KYPD---EDLG-V--KY   74 (224)
Q Consensus        18 gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P~~yr~~~~~----------------~-~~~~---~~~~-~--~~   74 (224)
                      ++|.+.+..+++++...+.+++.. .+.+...+.+.++||++...                . ..+.   ++.. .  ..
T Consensus       154 ~~~~v~f~~SGsEA~e~AlklAR~-~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd  232 (474)
T PLN02482        154 SVEMVRFVNSGTEACMGVLRLARA-YTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYND  232 (474)
T ss_pred             CCCEEEEeCChHHHHHHHHHHHHH-hcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCC
Confidence            457777888888888777776654 23444455566677775410                0 0000   0000 0  01


Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      +++++++++   .+++++||||+|||||++|+++|+++||+.++++            |+||| |+|. +|+++++|  +
T Consensus       233 ~~~l~~~l~---~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~-~ga~~~~g--v  305 (474)
T PLN02482        233 LEAVKKLFE---ANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAY-GGAQEYFG--I  305 (474)
T ss_pred             hHHHHHHHH---hCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCc-chHhHHhC--C
Confidence            355565554   3678999999999999999999999999999999            99999 9997 89999998  9


Q ss_pred             CCchhcccccccCCcccccceecHHHHHhhhcC-CcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQET-GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~-~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +|||+||||+||||+|+||+++++++++.+... ...+.+||+|||++|||++++|++|++++++++++++|++|+++|+
T Consensus       306 ~PDi~t~gK~lggG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~  385 (474)
T PLN02482        306 TPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGIL  385 (474)
T ss_pred             CCCEEEecchhhCCCceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998643 2346789999999999999999999999999999999999999998


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       386 ~l  387 (474)
T PLN02482        386 EA  387 (474)
T ss_pred             HH
Confidence            75

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=2.7e-34  Score=249.38  Aligned_cols=203  Identities=26%  Similarity=0.305  Sum_probs=166.2

Q ss_pred             ceeEEEEeecCCCCCCccccchhhhccCCCcceeecCCCccccCCCCCC------C-----CC-----ChhHHH----HH
Q psy6205          15 LFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPAD------K-----YP-----DEDLGV----KY   74 (224)
Q Consensus        15 l~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~------~-----~~-----~~~~~~----~~   74 (224)
                      ++..+|.++..+++++++..+.|+... .+.+...+-+-.|||+..+..      .     .+     +++...    --
T Consensus       105 ~~p~~e~vrfvnSGTEAtmsAiRlARa-~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~  183 (432)
T COG0001         105 RVPSIEKVRFVNSGTEATMSAIRLARA-YTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLP  183 (432)
T ss_pred             hcCcccEEEEecchhHHHHHHHHHHHH-hhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEec
Confidence            456679999999999999888887654 566677777788899866410      0     00     011111    11


Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      .|+++++.+.+.+.+++|||||+|||+|+.|+++|.++|++.||++            |+||| |... .+++++||  |
T Consensus       184 yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGF-R~~~-gGaq~~~g--i  259 (432)
T COG0001         184 YNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVAL-GGAQGYYG--V  259 (432)
T ss_pred             CCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhc-ccCC-cccccccC--c
Confidence            3555555555556789999999999999999999999999999999            99999 8885 67888998  9


Q ss_pred             CCchhcccccccCCcccccceecHHHHHhhhcCC-cccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhh
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG-VEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTPK  220 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~-~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~l  220 (224)
                      +||+.||||.||||+|+||+.+++++|+.+.+.+ ....+||+|||++|+|++++|+.+++ +++++++.+++++|++.|
T Consensus       260 ~PDlttlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl  339 (432)
T COG0001         260 EPDLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGL  339 (432)
T ss_pred             CcchhhhhhhhcCCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887654 33458999999999999999999987 569999999999999999


Q ss_pred             hh
Q psy6205         221 KE  222 (224)
Q Consensus       221 ~~  222 (224)
                      ++
T Consensus       340 ~~  341 (432)
T COG0001         340 RA  341 (432)
T ss_pred             HH
Confidence            86

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=100.00  E-value=4.3e-33  Score=247.99  Aligned_cols=167  Identities=27%  Similarity=0.423  Sum_probs=140.5

Q ss_pred             eeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------
Q psy6205          47 STEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------  120 (224)
Q Consensus        47 ~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------  120 (224)
                      ..+++.|++|++++...    +.....+++.+++++.. ..++++|||||+|||||++|+++++++|+++|+++      
T Consensus       158 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gi  232 (420)
T TIGR00700       158 VYRAPLPYPYRDGLLDK----QLSTDGELAAARAIFVI-DVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGI  232 (420)
T ss_pred             cEEeCCCcccccccccc----chhHHHHHHHHHHHHHh-hcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence            34455555555433211    12233466777776641 23568999999999999999999999999999999      


Q ss_pred             ------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHH
Q psy6205         121 ------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVAN  194 (224)
Q Consensus       121 ------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~  194 (224)
                            |+|||||+|+ +|++++++  ++|||+||||+++||+|+|++++++++++.+...  .+.+||++||++|++++
T Consensus       233 llI~DEV~tg~gr~g~-~~a~~~~~--~~pDi~~lsK~l~~G~pig~v~~~~~i~~~~~~~--~~~~T~~~~pl~~aaa~  307 (420)
T TIGR00700       233 VFIADEVQTGFARTGA-MFACEHEG--PEPDLITTAKSLADGLPLSGVTGRAEIMDAPAPG--GLGGTYAGNPLACAAAL  307 (420)
T ss_pred             EEEEEecccCCcccch-hHHHhhcC--CCCCEEEeeccccCCcceEEEEecHHHHhhcCCC--CcCCCCCcCHHHHHHHH
Confidence                  9999999997 88999998  9999999999999999999999999999988643  57799999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         195 AVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       195 a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++|++++++++.+++++++++|+++|+++
T Consensus       308 a~l~~l~~~~~~~~~~~~g~~l~~~L~~l  336 (420)
T TIGR00700       308 AVLAIIESEGLIERARQIGRLVTDRLTTL  336 (420)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999864

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=3.6e-33  Score=248.58  Aligned_cols=145  Identities=32%  Similarity=0.494  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCC
Q psy6205          73 KYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGD  140 (224)
Q Consensus        73 ~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~  140 (224)
                      .++++++++++. ..+++++||||+||+||++|++++|++|+++++++            |+|||||+|+ +|+++++| 
T Consensus       181 ~~~~~l~~~~~~-~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~a~~~~g-  257 (425)
T PRK07495        181 QSLAALDKLFKA-DVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK-LFAMEHHE-  257 (425)
T ss_pred             HHHHHHHHHHHh-ccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC-ceeecccC-
Confidence            456777777653 12457899999999999999999999999999999            9999999997 88999998 


Q ss_pred             CCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q psy6205         141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPK  220 (224)
Q Consensus       141 ~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l  220 (224)
                       ++|||+||||+|+||+|+|++++++++++.+...  .+.+||++||++||+++++|++++++++.++++++|++|+++|
T Consensus       258 -v~pDi~tlsK~l~~G~pigav~~~~~i~~~~~~~--~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L  334 (425)
T PRK07495        258 -VAADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPG--GLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRL  334 (425)
T ss_pred             -CCCCEEeehhhhcCCccceEEEEcHHHHhccCCC--CcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence             9999999999999999999999999999988643  5779999999999999999999999999999999999999999


Q ss_pred             hhc
Q psy6205         221 KEN  223 (224)
Q Consensus       221 ~~l  223 (224)
                      +++
T Consensus       335 ~~l  337 (425)
T PRK07495        335 ASL  337 (425)
T ss_pred             HHH
Confidence            865

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=2.5e-33  Score=247.54  Aligned_cols=128  Identities=35%  Similarity=0.550  Sum_probs=119.2

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      ++++|||+||+|+++|+++|+++|+++++++            |+|||||||+ +|+++++|  ++|||+|+||+||||+
T Consensus       178 ~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~-~~a~~~~g--v~PDi~t~gK~lg~G~  254 (395)
T PRK03715        178 DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGT-LFAYELSG--IEPDIMTLGKGIGGGV  254 (395)
T ss_pred             CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcc-hhhHhhcC--CCCceeeehhhhhCCc
Confidence            4799999999999999999999999999999            9999999997 89999998  9999999999999999


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+|+++++++++. +...  .+++||+|||++||+++++|++|+++++.++++++|++|+++|+++
T Consensus       255 p~~av~~~~~i~~-~~~~--~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l  317 (395)
T PRK03715        255 PLAALLAKAEVAV-FEAG--DQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLEL  317 (395)
T ss_pred             ceEEEEEcccccc-ccCC--CcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999973 3222  4679999999999999999999999999999999999999999865

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=100.00  E-value=7.4e-33  Score=247.80  Aligned_cols=163  Identities=24%  Similarity=0.378  Sum_probs=128.6

Q ss_pred             eeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------
Q psy6205          47 STEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------  120 (224)
Q Consensus        47 ~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------  120 (224)
                      ..++|+|+ +++++.......+.+...++++++++++.   ++++|||||+|||||++|+++|+++||+.+|++      
T Consensus       211 ~~~~p~p~-~~~~~~~~~~~~~~~~~~~l~~l~~~l~~---~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~  286 (464)
T TIGR00699       211 WPQAPFPS-LKYPLEEHVKENAKEEQRCLEEVEDLIKK---WHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNV  286 (464)
T ss_pred             ceecCCCC-cccccccccccchhHHHHHHHHHHHHHHh---cCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence            34556665 44443211000133445678888888863   567899999999999999999999999999999      


Q ss_pred             ------HHhCCccccccchhhhhcCCCCC--Cchhccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHH
Q psy6205         121 ------VQVGFGRVGTHWWAFQLQGDDII--PDIVTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCA  191 (224)
Q Consensus       121 ------v~tG~GrtG~~~~~~~~~g~~v~--pDi~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~a  191 (224)
                            |||||||||+ ||+++++|  |+  |||+|+||+|| ||+++    .++ .++..  ....+++||++||++||
T Consensus       287 lLI~DEV~tGfGrtG~-~fa~e~~g--v~~~PDi~t~gK~lg~gG~~~----~~~-~~~~~--~~~~~~~T~~gnp~~~a  356 (464)
T TIGR00699       287 AFIVDEVQTGVGATGK-FWAHEHWN--LDDPPDMVTFSKKFQTAGYFF----HDP-AFRPN--KPYRQFNTWMGDPSRAL  356 (464)
T ss_pred             EEEEeeeeeCCCCCcc-hhHHHhcC--CCCCCCEEEehhhhccCCccc----cch-hccCC--CCcccccCCCCCHHHHH
Confidence                  9999999997 89999998  86  99999999996 68743    232 22211  12357799999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         192 VANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       192 aa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++++|++++++++.++++++|++|+++|+++
T Consensus       357 aa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l  388 (464)
T TIGR00699       357 ILREIIQEIKRKDLLENVAHVGDYLYTGLEDL  388 (464)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999875

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=100.00  E-value=2.1e-32  Score=245.51  Aligned_cols=171  Identities=30%  Similarity=0.518  Sum_probs=145.1

Q ss_pred             CcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH---
Q psy6205          44 VRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH---  120 (224)
Q Consensus        44 ~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~---  120 (224)
                      ..++.++|+|++|+++.+..   .+.+.+.+++.+++++... .++++|||||+||+||++|+++|+++|++.|+++   
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~  251 (451)
T PRK06918        176 APEVYKAPFPYEYRRPEGLT---EEQYDDFMIEEFKNFFISE-VAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSE  251 (451)
T ss_pred             CCCcEEcCCCccccccccCc---hHHHHHHHHHHHHHHHHhh-cCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHH
Confidence            34455567777776554321   1444556677777776432 1467999999999999999999999999999999   


Q ss_pred             ---------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHH
Q psy6205         121 ---------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCA  191 (224)
Q Consensus       121 ---------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~a  191 (224)
                               |+|||||+|+ +|++++++  ++|||+++||++++|+|+|++++++++++.+...  .+.+||++||++|+
T Consensus       252 ~gillI~DEV~tg~gr~g~-~~a~~~~~--v~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~--~~~~T~~g~~l~~a  326 (451)
T PRK06918        252 HGILFVADEIQTGFARTGK-YFAIEHFD--VVPDLITVSKSLGAGVPISGVIGRKEIMDESAPG--ELGGTYAGSPLGCA  326 (451)
T ss_pred             cCCEEEEeccccCcCccCc-eehhHhcC--CCCCEEeeehhhcCCCccEEEEEcHHHHhccCCC--CcCcCCCcCHHHHH
Confidence                     9999999997 78999998  9999999999999999999999999999988543  57799999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         192 VANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       192 aa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++++|++++++++.+++++++++|+++|+++
T Consensus       327 aa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l  358 (451)
T PRK06918        327 AALAVLDIIEKENLNDRAIELGKVVMNRFEEM  358 (451)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999864

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=100.00  E-value=1.8e-32  Score=243.36  Aligned_cols=145  Identities=24%  Similarity=0.407  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCC
Q psy6205          73 KYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGD  140 (224)
Q Consensus        73 ~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~  140 (224)
                      .+++++++++++.....+++||||+|||||++|+++||++|+++++++            |||||||||+ +|++++++ 
T Consensus       176 ~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~a~~~~~-  253 (412)
T TIGR02407       176 DTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGT-FFSFEPAG-  253 (412)
T ss_pred             hHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hHHhcccC-
Confidence            346677777753212236899999999999999999999999999999            9999999997 89999998 


Q ss_pred             CCCCchhcccccccC-CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHH
Q psy6205         141 DIIPDIVTVGKPMGN-GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV-LETENLREHALDVGNQLHT  218 (224)
Q Consensus       141 ~v~pDi~~~~K~l~~-G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~-~~~~~l~~~~~~~g~~l~~  218 (224)
                       +.|||+|+||+||| |+|+|++++++++ +.+..  ..+.+||++||++|++++++|++ ++++++.+++++++++|++
T Consensus       254 -v~PDi~~~~K~lg~~G~pigav~~~~~~-~~~~~--~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~  329 (412)
T TIGR02407       254 -IEPDIVCLSKSISGYGLPLALTLIKPEL-DVWKP--GEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQE  329 (412)
T ss_pred             -CCCCEEEechhccCCccceeEEEEchhh-hccCC--CccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence             99999999999999 8999999999987 66643  25779999999999999999996 7888999999999999999


Q ss_pred             hhhhc
Q psy6205         219 PKKEN  223 (224)
Q Consensus       219 ~l~~l  223 (224)
                      +|+++
T Consensus       330 ~l~~l  334 (412)
T TIGR02407       330 RLDRI  334 (412)
T ss_pred             HHHHH
Confidence            99853

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=3e-32  Score=242.56  Aligned_cols=146  Identities=29%  Similarity=0.484  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcC
Q psy6205          72 VKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQG  139 (224)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g  139 (224)
                      +.++++++++++. ..+++++||||+||+||++|+++++++|+++++++            |+|||||+|+ +|++++++
T Consensus       180 ~~~~~~l~~~~~~-~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~-~~~~~~~~  257 (421)
T PRK06777        180 EEALSSVERLFKA-DIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK-LFAMEYYD  257 (421)
T ss_pred             HHHHHHHHHHHHh-ccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCc-hhhhhhcC
Confidence            3456777777753 12568899999999999999999999999999999            9999999997 88999998


Q ss_pred             CCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy6205         140 DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTP  219 (224)
Q Consensus       140 ~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~  219 (224)
                        ++|||+|+||+++||+|+|++++++++++.+...  .+.+||++||++|++++++|++++++++.+++++++++|+++
T Consensus       258 --~~pDiv~~sK~l~~G~pigav~~~~~i~~~~~~~--~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~  333 (421)
T PRK06777        258 --VKPDLITMAKSLGGGMPISAVVGRAEVMDAPAPG--GLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEV  333 (421)
T ss_pred             --CCCCEEeeehhhcCCCceEEEEEcHHHHhccCCC--CCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence              9999999999999999999999999999988654  567999999999999999999999999999999999999999


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |+++
T Consensus       334 L~~l  337 (421)
T PRK06777        334 LEKA  337 (421)
T ss_pred             HHHH
Confidence            9875

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=1.8e-32  Score=244.27  Aligned_cols=142  Identities=25%  Similarity=0.401  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      +++++++++.   .++++||||+||+|+++|+++|+++|++.++++            |+||| |||. +|+++++|  +
T Consensus       188 ~~~l~~~l~~---~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~-~ga~~~~g--v  260 (433)
T PRK00615        188 FQIFQTVMNS---LGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQ-GGAAAIYH--V  260 (433)
T ss_pred             HHHHHHHHHh---cCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccH-hHHHHhcC--C
Confidence            4556666653   457899999999999999999999999999999            99999 9997 89999998  9


Q ss_pred             CCchhcccccccCCcccccceecHHHHHhhhcCC-cccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG-VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~-~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +|||+||||+||||+|+|++++++++++.+.+.+ ..+.+||++||++||+++++|+++++++++++++++|++|+++|+
T Consensus       261 ~PDi~~~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~  340 (433)
T PRK00615        261 KPDITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIE  340 (433)
T ss_pred             CCCeEEEcccccCCcceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999986432 235689999999999999999999999999999999999988887


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       341 ~~  342 (433)
T PRK00615        341 EM  342 (433)
T ss_pred             HH
Confidence            63

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=100.00  E-value=3.2e-32  Score=242.36  Aligned_cols=145  Identities=26%  Similarity=0.449  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCC
Q psy6205          73 KYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGD  140 (224)
Q Consensus        73 ~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~  140 (224)
                      .+++.++++++.. ..+++|||||+||+|+++|+.++|++|+++|+++            |+|||||+|+ +|++++++ 
T Consensus       181 ~~~~~l~~~~~~~-~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~-~~a~~~~~-  257 (421)
T PRK09792        181 DSLDAIERLFKSD-IEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGK-LFAMDHYA-  257 (421)
T ss_pred             HHHHHHHHHHHhc-cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHhcC-
Confidence            4567777777531 1357899999999999999999999999999999            9999999997 79999998 


Q ss_pred             CCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q psy6205         141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPK  220 (224)
Q Consensus       141 ~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l  220 (224)
                       ++|||+||||+|+||+|+|++++++++++.+...  .+.+||++||++|++++++|++|+++++++++++++++|+++|
T Consensus       258 -~~pDi~t~gK~l~~G~pigav~~~~~i~~~~~~~--~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l  334 (421)
T PRK09792        258 -DKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPG--GLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTL  334 (421)
T ss_pred             -CCCcEEEeehhhcCCCceEEEEEcHHHHhccCCC--CcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence             9999999999999999999999999999988643  5779999999999999999999999999999999999999999


Q ss_pred             hhc
Q psy6205         221 KEN  223 (224)
Q Consensus       221 ~~l  223 (224)
                      +++
T Consensus       335 ~~l  337 (421)
T PRK09792        335 IDA  337 (421)
T ss_pred             HHH
Confidence            764

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.98  E-value=4.6e-32  Score=241.67  Aligned_cols=144  Identities=28%  Similarity=0.466  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCC
Q psy6205          74 YAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDD  141 (224)
Q Consensus        74 ~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~  141 (224)
                      ++++++++++......+++||||+|||||++|+++++++||++++++            |+|||||||+ +|++++++  
T Consensus       181 ~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~-~~~~~~~~--  257 (425)
T PRK09264        181 TLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGT-FFSFERAG--  257 (425)
T ss_pred             HHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccH-HHHHhhcC--
Confidence            45677777764211236899999999999999999999999999999            9999999997 89999998  


Q ss_pred             CCCchhcccccccC-CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHh
Q psy6205         142 IIPDIVTVGKPMGN-GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVM-EVLETENLREHALDVGNQLHTP  219 (224)
Q Consensus       142 v~pDi~~~~K~l~~-G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l-~~~~~~~l~~~~~~~g~~l~~~  219 (224)
                      +.|||+|+||+||+ |+|+|++++++++. .+...  .+.+||++||++|++++++| ++++++++.+++++++++|+++
T Consensus       258 v~PDi~t~~K~l~~~G~pigav~~~~~i~-~~~~~--~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~  334 (425)
T PRK09264        258 ITPDIVTLSKSISGYGLPMALVLIKPELD-VWKPG--EHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRER  334 (425)
T ss_pred             CCCCEEEeccccCCCccceEEEEEchhhh-ccCCC--ccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            99999999999998 89999999999984 44322  56789999999999999999 6777889999999999999999


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |+++
T Consensus       335 l~~l  338 (425)
T PRK09264        335 LEEI  338 (425)
T ss_pred             HHHH
Confidence            8764

>PRK07046 aminotransferase; Validated

Probab=99.98  E-value=1.2e-32  Score=246.68  Aligned_cols=198  Identities=19%  Similarity=0.193  Sum_probs=149.4

Q ss_pred             EEEEeecCCCCCCccccchhhhccCCCcceeecCCCccccCCCCC--------CC-----C---CC---hhHHHHHHHHH
Q psy6205          18 GVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPA--------DK-----Y---PD---EDLGVKYAQDV   78 (224)
Q Consensus        18 gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P~~yr~~~~~--------~~-----~---~~---~~~~~~~~~~l   78 (224)
                      ++|.+.+..++++++..+.+++.. .+.+...+.+-.+||++...        ..     .   +.   +.....-.+++
T Consensus       129 ~~~~v~F~nSGtEA~e~AlrlAR~-~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~  207 (453)
T PRK07046        129 GLPYWQVATTATDANRFVLRWARA-VTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDL  207 (453)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHH-hhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCCH
Confidence            367788888888888777776654 33444445555567765210        00     0   00   00000001234


Q ss_pred             HHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          79 QDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        79 ~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +.+.+.+  ..+++||||+||+||++|+++|+++||+.+|++            |+| | |+|. .+.++++|  |+|||
T Consensus       208 ~~l~~~l--~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-f-r~g~-Gg~~~~~g--v~PDi  280 (453)
T PRK07046        208 AALEAAL--ADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-I-SSGP-GGYTRAHG--LEPDF  280 (453)
T ss_pred             HHHHHHh--CCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-C-ccCC-cchhHHhC--CCccc
Confidence            4333333  247899999999999999999999999999999            999 6 5775 45667787  99999


Q ss_pred             hcccccccCCcccccceecHHHHHhhhcC-------CcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy6205         147 VTVGKPMGNGHPVAAVITTKEIAKSFQET-------GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTP  219 (224)
Q Consensus       147 ~~~~K~l~~G~p~~av~~~~~i~~~~~~~-------~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~  219 (224)
                      +|+||+||||+|+||+++++++++.+.+.       ...+.+||+|||++|||++++|+++++++++++++++|++|+++
T Consensus       281 ~t~gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~  360 (453)
T PRK07046        281 LVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAG  360 (453)
T ss_pred             eeehhhhcCCCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998631       12366899999999999999999999999999999999999999


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |+++
T Consensus       361 L~~l  364 (453)
T PRK07046        361 LRAV  364 (453)
T ss_pred             HHHH
Confidence            9863

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.97  E-value=1.5e-31  Score=239.25  Aligned_cols=142  Identities=28%  Similarity=0.437  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcC
Q psy6205          72 VKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQG  139 (224)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g  139 (224)
                      ..++++++++++   .+++++||||+|||||++|+++||++|++++|++            |||||||||+ +|+++++|
T Consensus       209 ~~~~~~~~~~i~---~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~g  284 (443)
T PRK08297        209 AEALAQARAAFE---RHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGT-AWAYQQLG  284 (443)
T ss_pred             HHHHHHHHHHHH---hCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccch-HHHHHhcC
Confidence            345666766665   3678999999999999999999999999999999            9999999997 89999998


Q ss_pred             CCCCCchhcccccccCCcccccceecHHHHHhhhc---CCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy6205         140 DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQE---TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL  216 (224)
Q Consensus       140 ~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~---~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l  216 (224)
                        ++|||+|+||++    |++++++++++++.+..   ....+++||++||++|++++++|+++++++++++++++|++|
T Consensus       285 --v~PDiv~~gK~l----~~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l  358 (443)
T PRK08297        285 --VRPDIVAFGKKT----QVCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYL  358 (443)
T ss_pred             --CCCCEEEecccc----cccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence              999999999998    56777888776653311   112478999999999999999999999999999999999999


Q ss_pred             HHhhhhc
Q psy6205         217 HTPKKEN  223 (224)
Q Consensus       217 ~~~l~~l  223 (224)
                      +++|+++
T Consensus       359 ~~~L~~l  365 (443)
T PRK08297        359 LARLEEL  365 (443)
T ss_pred             HHHHHHH
Confidence            9999864

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.97  E-value=2.3e-31  Score=238.06  Aligned_cols=169  Identities=34%  Similarity=0.569  Sum_probs=142.7

Q ss_pred             ceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-----
Q psy6205          46 MSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-----  120 (224)
Q Consensus        46 ~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----  120 (224)
                      +..++++|++++.++....   .++...+++.++++++.. .+++++||||+||+|+.+|++.++++|+++++++     
T Consensus       163 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~-~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g  238 (443)
T PRK08360        163 DVHYIPYPDCYRCPFGKEP---GSCKMECVEYIKEKFEGE-VYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHG  238 (443)
T ss_pred             CcEEEeCCccccccccCch---hhhHHHHHHHHHHHHHhc-cCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            4455666666665543211   334445666677766531 2457899999999999999999999999999999     


Q ss_pred             -------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHH
Q psy6205         121 -------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVA  193 (224)
Q Consensus       121 -------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa  193 (224)
                             |+|||||+|+ +|++++++  ++|||+|+||++++|+|+|++++++++++.+...  .+.+||++||++|+++
T Consensus       239 ~llI~DEv~~g~gr~G~-~~a~~~~~--~~pDiitlsK~l~~G~pigav~~~~~i~~~~~~~--~~~~T~~~~p~~~aaa  313 (443)
T PRK08360        239 ILLVVDEVQSGLGRTGK-WFAIEHFG--VEPDIITLGKPLGGGLPISATIGRAEIMDSLPPL--AHAFTLSGNPVASAAA  313 (443)
T ss_pred             CEEEEeccccCCCcCcc-chhhhhcC--CCCCEEEecccccCCceeEEEEEcHHHHhhhcCC--CCCCCCCcCHHHHHHH
Confidence                   9999999997 78999998  9999999999999999999999999999988643  5778999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         194 NAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       194 ~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++|++++++++.++++++|++|+++|+++
T Consensus       314 ~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l  343 (443)
T PRK08360        314 LAVIEEIEEKNLLKRAEKLGNYTKKRLEEM  343 (443)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999864

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.97  E-value=2.4e-31  Score=237.10  Aligned_cols=144  Identities=28%  Similarity=0.478  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHccCCCCceEEEEccc-cCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCC
Q psy6205          74 YAQDVQDLIEAMGRNGKRPCAFFAESL-QSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGD  140 (224)
Q Consensus        74 ~~~~l~~~~~~~~~~~~~iaavi~Epv-~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~  140 (224)
                      ++++++++++.   .++++||||+||+ |++||+++++++|+++++++            |+|||||||+ +|++++++ 
T Consensus       193 ~~~~l~~~l~~---~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~-~~~~~~~~-  267 (427)
T TIGR00508       193 AITPLAKLMEL---HSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGK-LFACEHAG-  267 (427)
T ss_pred             HHHHHHHHHHh---cCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-cchhhhcC-
Confidence            45666766653   4578999999997 99999999999999999999            9999999997 88999998 


Q ss_pred             CCCCchhcccccccCC-cccccceecHHHHHhhhcC---CcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy6205         141 DIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET---GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL  216 (224)
Q Consensus       141 ~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~---~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l  216 (224)
                       +.|||+|+||+|+|| +|++++++++++++.+...   ...+.+||++||++||+++++|++++++++.+++++++++|
T Consensus       268 -v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l  346 (427)
T TIGR00508       268 -VVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQL  346 (427)
T ss_pred             -CCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence             999999999999999 5999999999999998743   12367899999999999999999999999999999999999


Q ss_pred             HHhhhhc
Q psy6205         217 HTPKKEN  223 (224)
Q Consensus       217 ~~~l~~l  223 (224)
                      +++|+++
T Consensus       347 ~~~L~~l  353 (427)
T TIGR00508       347 KRELSPL  353 (427)
T ss_pred             HHHHHHh
Confidence            9999875

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.97  E-value=3.2e-31  Score=236.17  Aligned_cols=147  Identities=29%  Similarity=0.493  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHHHccCCCCceEEEEcc-ccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhh
Q psy6205          71 GVKYAQDVQDLIEAMGRNGKRPCAFFAES-LQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQL  137 (224)
Q Consensus        71 ~~~~~~~l~~~~~~~~~~~~~iaavi~Ep-v~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~  137 (224)
                      .+.++++++++++.   +++++||||+|| +|+++|+++++++|+++++++            |+|||||||+ +|++++
T Consensus       182 ~~~~~~~l~~~l~~---~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~-~~a~~~  257 (423)
T PRK05964        182 EQATLDALEALLEK---HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGT-LFACEQ  257 (423)
T ss_pred             HHHHHHHHHHHHHh---CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc-hhHHHh
Confidence            34567778877753   568999999999 799999999999999999999            9999999997 889999


Q ss_pred             cCCCCCCchhcccccccCC-cccccceecHHHHHhhhcC----CcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy6205         138 QGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET----GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDV  212 (224)
Q Consensus       138 ~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~----~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~  212 (224)
                      ++  ++|||+++||+|+|| +|+|++++++++++.+...    ...|.+||++||++|++++++|++++++++.++++++
T Consensus       258 ~~--v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~  335 (423)
T PRK05964        258 AG--VSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAAL  335 (423)
T ss_pred             cC--CCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            98  999999999999999 7999999999999988532    1246789999999999999999999999999999999


Q ss_pred             HHHHHHhhhhc
Q psy6205         213 GNQLHTPKKEN  223 (224)
Q Consensus       213 g~~l~~~l~~l  223 (224)
                      +++|+++|+++
T Consensus       336 g~~l~~~l~~l  346 (423)
T PRK05964        336 SAGLAEGLEPF  346 (423)
T ss_pred             HHHHHHHHHhh
Confidence            99999999865

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.97  E-value=8.3e-31  Score=231.78  Aligned_cols=129  Identities=33%  Similarity=0.583  Sum_probs=121.5

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      ++++|||+||+++++|+++|+++|+++++++            |+|||||||+ +|+++++|  ++|||+|+||++|||+
T Consensus       178 ~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~-~~a~~~~g--v~pDi~t~~K~lggG~  254 (397)
T TIGR03246       178 DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYG--VTPDILTSAKALGGGF  254 (397)
T ss_pred             cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCcccc-chhhhhcC--CCCCEEEeehhhhCCc
Confidence            4799999999999999999999999999999            9999999997 78999998  9999999999999999


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+|++++++++++.+...  .+.+||++||++|++++++|++++++++.+++++++++|+++|+++
T Consensus       255 pigav~~~~~i~~~~~~~--~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~l  318 (397)
T TIGR03246       255 PIGAMLTTTEIAAHLKVG--THGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEKI  318 (397)
T ss_pred             ceeEEEEcHHHHHhccCC--CcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988643  5678999999999999999999998999999999999999999875

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.97  E-value=5.6e-31  Score=229.93  Aligned_cols=113  Identities=32%  Similarity=0.555  Sum_probs=106.1

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      +++||||+||+||++|+++++++|++++|++            ||||| |||+ +|++++++  ++|||+|+||+||||+
T Consensus       161 ~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~-~~a~~~~g--v~PDiv~~gK~lggG~  236 (364)
T PRK04013        161 KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK-FLAIEHYK--VEPDIVTMGKGIGNGV  236 (364)
T ss_pred             CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCc-hhHHHhcC--CCCCEEEecccccCCc
Confidence            5899999999999999999999999999999            99999 9997 89999998  9999999999999999


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDV  212 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~  212 (224)
                      |+||++.++++.    .  ..|++||+|||++|||++++|++|+++++++|++++
T Consensus       237 P~~a~~~~~~~~----~--~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~  285 (364)
T PRK04013        237 PVSLTLTNFDVE----R--GKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK  285 (364)
T ss_pred             eeEEEEeccccc----C--CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            999999998762    2  257899999999999999999999999999999886

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.97  E-value=3e-30  Score=230.33  Aligned_cols=142  Identities=27%  Similarity=0.422  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcC
Q psy6205          72 VKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQG  139 (224)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g  139 (224)
                      ..+++++++.++   .++++|||||+|||||++|+++||++|+++++++            |||||||||+ +|+++++|
T Consensus       202 ~~~l~~~~~~~~---~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~-~~a~~~~g  277 (431)
T TIGR03251       202 EEALRQARAAFA---ERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGT-AWAYQQLG  277 (431)
T ss_pred             HHHHHHHHHHHH---hCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccch-HHHHHhcC
Confidence            355667776665   3678999999999999999999999999999999            9999999997 89999998


Q ss_pred             CCCCCchhcccccccCCcccccceecHHHHHhhh---cCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy6205         140 DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQ---ETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL  216 (224)
Q Consensus       140 ~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~---~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l  216 (224)
                        ++|||+|+||++    |+++++..+++.+...   .....+.+||+|||++|++++++|++++++++.++++++|++|
T Consensus       278 --v~PDi~~~gK~~----~~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l  351 (431)
T TIGR03251       278 --VQPDIVAFGKKT----QVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHL  351 (431)
T ss_pred             --CCCCEEEecccC----ccceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence              999999999997    6777788776544321   1112467999999999999999999999999999999999999


Q ss_pred             HHhhhhc
Q psy6205         217 HTPKKEN  223 (224)
Q Consensus       217 ~~~l~~l  223 (224)
                      +++|+++
T Consensus       352 ~~~L~~l  358 (431)
T TIGR03251       352 LARLHEL  358 (431)
T ss_pred             HHHHHHH
Confidence            9999864

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PLN00144 acetylornithine transaminase

Probab=99.96  E-value=1.9e-29  Score=222.02  Aligned_cols=139  Identities=28%  Similarity=0.530  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      ++.+++.++     .++++|||+||+|+.+|+++++++|+++++++            |+|||||+|+ +|++++++  +
T Consensus       156 ~~~l~~~~~-----~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~-~~~~~~~~--~  227 (382)
T PLN00144        156 LEAARKLIQ-----KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGY-LWAHEAYG--V  227 (382)
T ss_pred             HHHHHHhcC-----CCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-HhhhhhcC--C
Confidence            345554442     36899999999999999999999999999999            9999999997 88999998  9


Q ss_pred             CCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      .|||+||||+|+||+|+|++++++++++.+...  .+.+||++||++|++++++|++|+++++.+++++++++|++.|++
T Consensus       228 ~PDi~t~sK~l~~G~pig~v~~~~~~~~~~~~~--~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~  305 (382)
T PLN00144        228 EPDIMTLAKPLAGGLPIGAVLVTEKVASAINPG--DHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRR  305 (382)
T ss_pred             CCCEEEecccccCCcceEEEEEcHHHHhccCCC--CCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988643  577999999999999999999999999999999999999998875


Q ss_pred             c
Q psy6205         223 N  223 (224)
Q Consensus       223 l  223 (224)
                      +
T Consensus       306 ~  306 (382)
T PLN00144        306 K  306 (382)
T ss_pred             H
Confidence            3

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.96  E-value=2.8e-29  Score=222.58  Aligned_cols=130  Identities=28%  Similarity=0.483  Sum_probs=122.0

Q ss_pred             CCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC
Q psy6205          89 GKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG  156 (224)
Q Consensus        89 ~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G  156 (224)
                      +++++|||+||+|+++|+++++++|+++++++            |+|||||+|+ +|++++++  ++|||+||||+++||
T Consensus       185 ~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~a~~~~~--~~pdi~t~~K~l~~G  261 (408)
T PRK04612        185 GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGT-LFAHWQEQ--VTPDIVTLAKALGGG  261 (408)
T ss_pred             CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-hhhhhhcC--CCCCEEEEcchhcCC
Confidence            46899999999999999999999999999999            9999999997 88888887  999999999999999


Q ss_pred             cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|+|++++++++++.+...  .+.+||++||++|++++++|++++++++.++++++|++|+++|+++
T Consensus       262 ~piga~~~~~~~~~~~~~~--~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l  326 (408)
T PRK04612        262 FPIGAMLAGPKVAETMQFG--AHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEAL  326 (408)
T ss_pred             CceEEEEECHHHHhhhcCC--CcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988653  5678999999999999999999999999999999999999999875

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.96  E-value=1e-28  Score=219.01  Aligned_cols=129  Identities=30%  Similarity=0.525  Sum_probs=121.3

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      ++++|||+||+++++|+++|+++|+++++++            |+|||||+|+ +|++++++  +.||++|+||++|||+
T Consensus       182 ~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~-~~~~~~~~--v~pDi~t~sK~l~gG~  258 (406)
T PRK12381        182 DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYG--VTPDVLTTAKALGGGF  258 (406)
T ss_pred             CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcc-hhhhHhhC--CCCCEEEehhhhhCCC
Confidence            4799999999999999999999999999999            9999999997 78889998  9999999999999999


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+|++++++++++.+...  .+.+||++||++|++++++|++++++++.+++++++++|+++|+++
T Consensus       259 ~ig~~~~~~~~~~~~~~~--~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l  322 (406)
T PRK12381        259 PIGAMLTTEKCASVMTVG--THGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTI  322 (406)
T ss_pred             ceEEEEEcHHHHhhcCCC--CCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988643  5678999999999999999999998899999999999999999875

>KOG1405|consensus

Probab=99.95  E-value=1.4e-28  Score=206.58  Aligned_cols=205  Identities=24%  Similarity=0.353  Sum_probs=154.1

Q ss_pred             eeccCCceeEEEEeecCCCCCCccccchhhhccCC----Ccc---------eee--cCCCcc-------ccCCCCCCCCC
Q psy6205           9 DVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPP----VRM---------STE--APCPDV-------YRGKYPADKYP   66 (224)
Q Consensus         9 ~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~----~~~---------~~~--vp~P~~-------yr~~~~~~~~~   66 (224)
                      .-||.+-+..-|+.++..+..|.++.-.-+.|+..    +.+         +|.  +|.-+|       |+.|..++...
T Consensus       167 k~rg~~~~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~SKpIHKldiPaFdWPiA~fP~ykYPLdenv~~  246 (484)
T KOG1405|consen  167 KERGQAGFSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPAFDWPIAPFPRYKYPLDENVAE  246 (484)
T ss_pred             hcCCCCCCCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccCccccccCCCCCCCCCCCCccccCChhhhhhh
Confidence            56787788888888887777776532111111111    111         121  122222       33333322211


Q ss_pred             ChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchh
Q psy6205          67 DEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWA  134 (224)
Q Consensus        67 ~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~  134 (224)
                      .....+.|++++|++|....+....|||+||||||++||+...+++|++.||++            ||||-|-||+ +|+
T Consensus       247 N~ked~~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk-~Wa  325 (484)
T KOG1405|consen  247 NKKEDQGCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGK-FWA  325 (484)
T ss_pred             hhhhhhhHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCc-eee
Confidence            234567899999999998765667899999999999999999999999999999            9999999997 999


Q ss_pred             hhhcCCCCCCchhccccccc-CCcccccceecHHHHHhhhcC-CcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy6205         135 FQLQGDDIIPDIVTVGKPMG-NGHPVAAVITTKEIAKSFQET-GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDV  212 (224)
Q Consensus       135 ~~~~g~~v~pDi~~~~K~l~-~G~p~~av~~~~~i~~~~~~~-~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~  212 (224)
                      +|||+++-.||+|||||-+- |||     .-.    +.|+.. ...+++||.|+|.-+-...+++++|++++|.++++..
T Consensus       326 Hehw~l~~PpD~vTFSKK~q~gGf-----fh~----~~frpn~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~v  396 (484)
T KOG1405|consen  326 HEHWNLDSPPDVVTFSKKFQTGGF-----FHD----EEFRPNEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHV  396 (484)
T ss_pred             ehhcCCCCCccceehhhhhhcCcc-----ccC----cccCCCchHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            99999667899999999984 675     223    223332 3456799999999999999999999999999999999


Q ss_pred             HHHHHHhhhhc
Q psy6205         213 GNQLHTPKKEN  223 (224)
Q Consensus       213 g~~l~~~l~~l  223 (224)
                      |+.|.++|.+|
T Consensus       397 G~~l~~gL~~L  407 (484)
T KOG1405|consen  397 GKALLKGLLEL  407 (484)
T ss_pred             HHHHHHHHHHH
Confidence            99999999865

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.95  E-value=7.4e-28  Score=214.76  Aligned_cols=142  Identities=28%  Similarity=0.396  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      ++++++.++.   .++++++||+||+||++|+++++++|+++++++            |+||| |+|. +|++++++  +
T Consensus       184 ~~~l~~~i~~---~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~-~~~~~~~~--~  256 (426)
T PRK00062        184 LEAVEELFEE---YGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVAL-GGAQGYYG--V  256 (426)
T ss_pred             HHHHHHHHHh---CCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCC-ccHHHHhC--C
Confidence            5666666653   467999999999999999999999999999999            99999 9997 78899998  9


Q ss_pred             CCchhcccccccCCcccccceecHHHHHhhhcC-CcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQET-GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~-~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      .|||+++||++++|+|+|++++++++++.+... ...+++||++||++|++++++|++++++++++++++++++|+++|+
T Consensus       257 ~pDi~~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~  336 (426)
T PRK00062        257 TPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLK  336 (426)
T ss_pred             CcchHhhhhHhhCCCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998643 2245689999999999999999999988999999999999999997


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       337 ~~  338 (426)
T PRK00062        337 EA  338 (426)
T ss_pred             HH
Confidence            53

>PLN02624 ornithine-delta-aminotransferase

Probab=99.95  E-value=1.7e-27  Score=214.89  Aligned_cols=141  Identities=33%  Similarity=0.617  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      ++.++++++   .++++++|||+||+|+++|++.|+++|+++++++            |++||||+|+ +|++++++  +
T Consensus       211 ~~~l~~~l~---~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~-~~a~~~~~--i  284 (474)
T PLN02624        211 LDALEKIFE---EDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGK-MLACDWEE--V  284 (474)
T ss_pred             HHHHHHHHH---hCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcc-hhhHHhcC--C
Confidence            355666664   2567899999999999999999999999999999            9999999997 88988888  9


Q ss_pred             CCchhcccccccCC-cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      .|||+++||++|+| +|+|++++++++++.+...  .+++||++||++|++++++|++++++++.+++++++++|+++|+
T Consensus       285 ~pDiv~lsK~lggG~~pigav~~~~~i~~~~~~~--~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L~  362 (474)
T PLN02624        285 RPDVVILGKALGGGVIPVSAVLADKDVMLCIKPG--EHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQ  362 (474)
T ss_pred             CCCEEEecccccCCCCcceeeeecHHHHhHhccC--CcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence            99999999999998 7999999999999887543  56789999999999999999999988999999999999999997


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       363 ~l  364 (474)
T PLN02624        363 KI  364 (474)
T ss_pred             HH
Confidence            64

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.95  E-value=4e-27  Score=209.76  Aligned_cols=141  Identities=26%  Similarity=0.408  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      ++++++++..   ++++++|||+||+|+++|+++++++|+++|+++            |+||| |+|. +|++++++  +
T Consensus       182 ~~~l~~~i~~---~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~-~~~~~~~~--~  254 (423)
T TIGR00713       182 LEALEEVFEE---YGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVAL-GGAQEYFG--V  254 (423)
T ss_pred             HHHHHHHHHH---cCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCc-chhHHHhC--C
Confidence            4566666652   457899999999999999999999999999999            99999 9996 78888998  9


Q ss_pred             CCchhcccccccCCcccccceecHHHHHhhhcCC-cccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG-VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~-~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      .|||+||||++++|+|+|++++++++++.+.... ..+.+||++||++|++++++|++++++++.+++++++++++++|+
T Consensus       255 ~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~  334 (423)
T TIGR00713       255 EPDLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLS  334 (423)
T ss_pred             CcchhhhhhhhcCCCceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999986432 246689999999999999999999988899999999999999886


Q ss_pred             h
Q psy6205         222 E  222 (224)
Q Consensus       222 ~  222 (224)
                      +
T Consensus       335 ~  335 (423)
T TIGR00713       335 E  335 (423)
T ss_pred             H
Confidence            4

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.95  E-value=3.3e-27  Score=210.77  Aligned_cols=138  Identities=25%  Similarity=0.337  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      +++++++++.   +++++||||+||++|+    .|+++|+++++++            |+|||++++  +++.+++|  +
T Consensus       174 ~~~l~~~l~~---~~~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~--~g~~~~~g--v  242 (431)
T PRK06209        174 IASLEALFED---HPGRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHM--RGAQKLYG--I  242 (431)
T ss_pred             HHHHHHHHHh---CCCCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc--chhhHHhC--C
Confidence            4666666653   5678999999999987    8889999999999            899998865  34555788  9


Q ss_pred             CCchhcccccccCCcccccceecHHHHHh--hhc----CCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKS--FQE----TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL  216 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~--~~~----~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l  216 (224)
                      .|||+|+||+||||+|+|++++++++++.  +..    ....|.+||++||++||+++++|++|+++++.++++++|++|
T Consensus       243 ~PDi~t~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l  322 (431)
T PRK06209        243 VPDLSCFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKL  322 (431)
T ss_pred             CcceeeehhhhcCCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            99999999999999999999999999997  311    112367899999999999999999999999999999999999


Q ss_pred             HHhhhhc
Q psy6205         217 HTPKKEN  223 (224)
Q Consensus       217 ~~~l~~l  223 (224)
                      +++|+++
T Consensus       323 ~~~L~~~  329 (431)
T PRK06209        323 AAGVNEA  329 (431)
T ss_pred             HHHHHHH
Confidence            9999763

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.94  E-value=1.3e-26  Score=204.72  Aligned_cols=129  Identities=37%  Similarity=0.628  Sum_probs=120.8

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      +++++||+||+|+.+|++.|+++|+++|+++            +++||||+|+ +|++++++  +.||++||||++++|+
T Consensus       182 ~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~-~~~~~~~~--~~pDi~t~sK~l~~G~  258 (398)
T PRK03244        182 DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGA-WFAHQHDG--VTPDVVTLAKGLGGGL  258 (398)
T ss_pred             CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccch-HHhhhhhC--CCCCEEEEchhhhCCc
Confidence            4799999999999999999999999999999            9999999997 78888887  9999999999999999


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+|++++++++++.+...  .+.+||++||++|++++++|++++++++.+++++++++|++.|+++
T Consensus       259 ~ig~~~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~  322 (398)
T PRK03244        259 PIGACLAFGPAADLLTPG--LHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEAL  322 (398)
T ss_pred             ccEEEEEcHHHHhhccCC--CCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            999999999999988643  5678999999999999999999998899999999999999999875

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.94  E-value=5e-26  Score=201.44  Aligned_cols=141  Identities=35%  Similarity=0.649  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      +++|+++++.   .++++++||+||+++++|++.|+++|+++++++            |+|||||+|+ +|++++++  +
T Consensus       173 ~~~le~~l~~---~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~-~~~~~~~~--~  246 (401)
T TIGR01885       173 LEALEEALED---HGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGK-LLCVDHEN--V  246 (401)
T ss_pred             HHHHHHHHHh---cCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hhHHhhcC--C
Confidence            4667776653   457899999999999999999999999999999            8999999997 77888887  9


Q ss_pred             CCchhcccccccCC-cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      .||++|+||++++| +|+|++++++++++.+...  .+.+||++||++|++++++|++++++++.+++++++++|+++|+
T Consensus       247 ~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~--~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L~  324 (401)
T TIGR01885       247 KPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPG--EHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLK  324 (401)
T ss_pred             CCCEEEeeccccCCCCCcEEEEEcHHHHhhccCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            99999999999988 7999999999999988643  45689999999999999999999988999999999999999998


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       325 ~l  326 (401)
T TIGR01885       325 KL  326 (401)
T ss_pred             hc
Confidence            76

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.93  E-value=1.7e-25  Score=199.50  Aligned_cols=145  Identities=28%  Similarity=0.448  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCC
Q psy6205          73 KYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGD  140 (224)
Q Consensus        73 ~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~  140 (224)
                      .++++|+++++.. .+++++||||+||+|+++|+++++++|+++++++            |++||||+|+ ++++++++ 
T Consensus       182 ~~~~~l~~~l~~~-~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~-~~~~~~~~-  258 (425)
T PRK08088        182 DAIASIERIFKND-AAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT-LFAMEQMG-  258 (425)
T ss_pred             HHHHHHHHHHHhc-cCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-hhHHhhcC-
Confidence            4567777777531 2467899999999999999999999999999999            9999999997 78888888 


Q ss_pred             CCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q psy6205         141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPK  220 (224)
Q Consensus       141 ~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l  220 (224)
                       +.|||.+|||++++|+|+|++++++++++.+...  .+.+||++||+++++++++|+.+++++++++++++++++++.|
T Consensus       259 -~~pdi~s~sK~l~~G~rig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l  335 (425)
T PRK08088        259 -VAADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPG--GLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGL  335 (425)
T ss_pred             -CCCCEEEEeccccCCCcceeeEecHHHHhhcCCC--CCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence             9999999999999999999999999999988654  5678999999999999999999998899999999999999998


Q ss_pred             hhc
Q psy6205         221 KEN  223 (224)
Q Consensus       221 ~~l  223 (224)
                      +++
T Consensus       336 ~~l  338 (425)
T PRK08088        336 LAI  338 (425)
T ss_pred             HHH
Confidence            754

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.93  E-value=4.4e-25  Score=195.17  Aligned_cols=129  Identities=35%  Similarity=0.660  Sum_probs=119.7

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-  156 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-  156 (224)
                      +++++||+||+++.+|.+.++++|+++++++            +++||||+|+ +|++++++  +.||++|+||++|+| 
T Consensus       185 ~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~~--~~pdi~~~sK~lg~gg  261 (396)
T PRK04073        185 PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK-LFACDWDN--VTPDMYILGKALGGGV  261 (396)
T ss_pred             cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcH-HHHhhhcC--CCCCEEEecccccCCC
Confidence            4689999999999999999999999999999            9999999997 78888887  999999999999987 


Q ss_pred             cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|+|++++++++++.+...  .+.+||++||++|++++++|++++++++.+++++++++|.++|+++
T Consensus       262 ~~ig~~~~~~~i~~~~~~~--~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L~~l  326 (396)
T PRK04073        262 FPISCVAANRDILGVFTPG--SHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKEI  326 (396)
T ss_pred             CcceEEEEcHHHHhhhcCC--CCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Confidence            8999999999999988643  5678999999999999999999988899999999999999999875

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.93  E-value=1.9e-25  Score=196.89  Aligned_cols=129  Identities=33%  Similarity=0.551  Sum_probs=120.2

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      +++++||+||+++.+|+++++++|+++|+++            |++||||+|+ +|++++++  +.||++++||++++|+
T Consensus       174 ~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~--~~pdi~t~sK~l~~G~  250 (389)
T PRK01278        174 PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK-LFAHEWAG--VTPDIMAVAKGIGGGF  250 (389)
T ss_pred             CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-ceeecccC--CCCCEEEEehhccCCc
Confidence            3799999999999999999999999999999            9999999997 78888888  9999999999999999


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+|++++++++++.+...  .+.+||++||+++++++++|++++++++.+++++++++++++|+++
T Consensus       251 ~ig~~~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l  314 (389)
T PRK01278        251 PLGACLATEEAAKGMTPG--THGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGL  314 (389)
T ss_pred             ceEEEEEcHHHHhccCCC--CCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988643  5778999999999999999999988899999999999999999864

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.92  E-value=1.4e-24  Score=190.55  Aligned_cols=128  Identities=37%  Similarity=0.580  Sum_probs=118.7

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      +++++||+||+++++|+++++++|+++++++            |++||||+|+ ++++++++  +.||++|+||++++|+
T Consensus       166 ~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~-~~~~~~~~--~~~di~t~sK~l~~G~  242 (377)
T PRK02936        166 EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGT-LFAYEQFG--LDPDIVTVAKGLGNGI  242 (377)
T ss_pred             CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhHHHhhC--CCCcEEEEcccccCCC
Confidence            4689999999999999999999999999999            9999999997 77888887  9999999999999999


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      |+|++++++++++.+...  .+.+||++||+++++++++|+.++++++++++++++++++++|++
T Consensus       243 ~ig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~  305 (377)
T PRK02936        243 PVGAMIGKKELGTAFGPG--SHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQE  305 (377)
T ss_pred             ccEEEEEcHHHHhhccCC--CCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            999999999999988643  466899999999999999999998788999999999999999976

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.91  E-value=2.5e-24  Score=189.00  Aligned_cols=129  Identities=32%  Similarity=0.521  Sum_probs=119.4

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      +++++|++||+++++|+++++++|++.++++            +++||||+|+ +|.++.++  +.|||+||||+|++|+
T Consensus       164 ~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~-~~~~~~~~--~~pdi~t~sK~l~~G~  240 (375)
T PRK04260        164 KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGK-LYAFEHYG--IEPDIFTLAKGLANGV  240 (375)
T ss_pred             CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-hhhhHhhC--CCCCEEEecccccCCc
Confidence            4689999999999999999999999999999            8999999997 77888888  9999999999999999


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+|++++++++++.+...  .+.+||++||++|+++.++|++++++++.+++++.+++++++|+++
T Consensus       241 ~ig~~~~~~~~~~~~~~~--~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~  304 (375)
T PRK04260        241 PVGAMLAKSSLGGAFGYG--SHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKA  304 (375)
T ss_pred             ceEEEEEcHHHHhhcCCC--CCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988643  4678999999999999999999998899999999999999998763

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.91  E-value=6.1e-24  Score=188.29  Aligned_cols=129  Identities=35%  Similarity=0.614  Sum_probs=119.6

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      +++++||+||+++++|+++++++|+++++++            |++||||+|+ ++++++++  +.|||++|||++++|+
T Consensus       183 ~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~--~~pdi~s~sK~l~~G~  259 (403)
T PRK05093        183 DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD-LFAYMHYG--VTPDILTSAKALGGGF  259 (403)
T ss_pred             CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chhhhhcC--CCCCEEEecccccCCc
Confidence            4699999999999999999999999999999            9999999997 77888887  9999999999999999


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+|++++++++++.+...  .+.+||++||+++++++++|++++++++.+++++++++|.++|+++
T Consensus       260 rig~vv~~~~i~~~l~~~--~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~  323 (403)
T PRK05093        260 PIGAMLTTAEIASHFKVG--THGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQKI  323 (403)
T ss_pred             ceEEEEEcHHHHhhcCCC--CCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988643  4668999999999999999999988899999999999999999875

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.90  E-value=5.5e-23  Score=181.86  Aligned_cols=129  Identities=35%  Similarity=0.609  Sum_probs=118.8

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-  156 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-  156 (224)
                      +++++||+||+++.+|++.++++|+++++++            |++||||+|+ +|+.+++|  +.||++++||+++|| 
T Consensus       186 ~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~-~~~~~~~g--~~~D~~~~~K~l~gg~  262 (401)
T PRK00854        186 PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK-LLAEEHEG--IEADVTLIGKALSGGF  262 (401)
T ss_pred             CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCch-HhHHhhcC--CCCCEEEecccccCCc
Confidence            3689999999999999999999999999999            9999999997 77888888  999999999999999 


Q ss_pred             cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|+|++++++++++.+...  .+.+||++||+++++++++|+.++++++.+++++++++|.+.|+++
T Consensus       263 ~~ig~v~~~~~~~~~l~~~--~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~~  327 (401)
T PRK00854        263 YPVSAVLSNSEVLGVLKPG--QHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRSI  327 (401)
T ss_pred             cCeEEEEEcHHHHhcccCC--CCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence            5999999999999988643  4668999999999999999999988889999999999999999875

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.89  E-value=6.4e-23  Score=181.24  Aligned_cols=139  Identities=36%  Similarity=0.654  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      +++|++.++     .+++++|++||+++++|++.++++|+++++++            |++||||+|+ +++.++++  +
T Consensus       167 ~~~le~~l~-----~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~-~~~~~~~~--~  238 (400)
T PTZ00125        167 VEALEKLLQ-----DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGK-LLAHDHEG--V  238 (400)
T ss_pred             HHHHHHHhC-----CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhHHHhcC--C
Confidence            445555442     35799999999999999999999999999999            8999999997 77888887  9


Q ss_pred             CCchhcccccccCCc-ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~-p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      .||++++||++++|+ |+|++++++++++.+...  .+.+||++||+++++++++|++++++++.+++++++++++++|+
T Consensus       239 ~pd~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~~--~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~  316 (400)
T PTZ00125        239 KPDIVLLGKALSGGLYPISAVLANDDVMLVIKPG--EHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLK  316 (400)
T ss_pred             CCCEEEEcccccCCCcCcEEEEEcHHHHhhccCC--CCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            999999999999985 999999999999988643  45689999999999999999999888999999999999999997


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       317 ~l  318 (400)
T PTZ00125        317 EL  318 (400)
T ss_pred             HH
Confidence            64

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.89  E-value=1.3e-22  Score=179.58  Aligned_cols=144  Identities=40%  Similarity=0.660  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCC
Q psy6205          74 YAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDD  141 (224)
Q Consensus        74 ~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~  141 (224)
                      .+++|++.++   .+++++++||+||+++++|++.++++|+++++++            +++||||+|. ++++++++  
T Consensus       177 d~~~l~~~l~---~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~-~~~~~~~~--  250 (413)
T cd00610         177 DLEALEEALE---EHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK-MFAFEHFG--  250 (413)
T ss_pred             HHHHHHHHHh---cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-hhhHhhcC--
Confidence            3455555543   3557899999999999999999999999999998            8999999997 77888888  


Q ss_pred             CCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       142 v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +.||++++||++++|+|+|++++++++++.+......+.+||++||+++++++++|++++++++.+++++++++|+++|+
T Consensus       251 ~~~d~~t~sK~l~~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~  330 (413)
T cd00610         251 VEPDIVTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLR  330 (413)
T ss_pred             CCCCeEEEcccccCccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999862122356689999999999999999999888999999999999999998


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       331 ~~  332 (413)
T cd00610         331 EL  332 (413)
T ss_pred             HH
Confidence            64

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.88  E-value=1.9e-22  Score=177.82  Aligned_cols=129  Identities=38%  Similarity=0.646  Sum_probs=118.8

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      +++++|++||+++.+|+.+++++|+++++++            +++||||+|+ ++++++++  +.||+++|||++++|+
T Consensus       181 ~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~-~~~~~~~~--~~pdi~t~sK~~~~G~  257 (396)
T PRK02627        181 DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK-LFAYQHYG--IEPDIMTLAKGLGGGV  257 (396)
T ss_pred             CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc-eeeehhcC--CCCCEEEEcchhhCCc
Confidence            5799999999999999999999999999999            9999999997 78888887  9999999999999999


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+|++++++++++.+...  .+.+||++||++++++.++|+.++++++.+++++++++++++|+++
T Consensus       258 rig~~~~~~~~~~~~~~~--~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  321 (396)
T PRK02627        258 PIGAVLAKEKVADVFTPG--DHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLREL  321 (396)
T ss_pred             ccEEEEEcHHHHhccCCC--CCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988643  4678999999999999999999988899999999999999998764

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.74  E-value=2.4e-17  Score=144.45  Aligned_cols=128  Identities=36%  Similarity=0.638  Sum_probs=114.4

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHP  158 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p  158 (224)
                      ++.+|++||.++.+|.++++.++++++.++            +++|||++|+ ++.++.++  +.||++|+||++++|+|
T Consensus       170 ~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~-~~~~~~~~--~~~d~~t~sK~~~~G~r  246 (379)
T TIGR00707       170 ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFAYEHYG--IEPDIITLAKGLGGGVP  246 (379)
T ss_pred             CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhhHHhcC--CCCCEEEEcccccCCcc
Confidence            578999999999999988899999999888            8899999996 66667777  89999999999998999


Q ss_pred             cccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         159 VAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       159 ~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|++++++++++.+...  .+..+|++||++++++.++|+.++++++.++++++.++++++|+++
T Consensus       247 iG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (379)
T TIGR00707       247 IGATLAKEEVAEAFTPG--DHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEEL  309 (379)
T ss_pred             cEEEEEcHHHHhhhcCC--CCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988653  4567899999999999999999987889999999999999998764

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PLN02822 serine palmitoyltransferase

Probab=99.62  E-value=3.2e-15  Score=135.44  Aligned_cols=121  Identities=18%  Similarity=0.220  Sum_probs=101.7

Q ss_pred             eEEEEccccCCCCcccCCHHHHHHHHHH--------HHh--CCccccccchhhhhcCCCC---CCchhc--cccccc--C
Q psy6205          93 CAFFAESLQSCGGQIIPPANYLREVYKH--------VQV--GFGRVGTHWWAFQLQGDDI---IPDIVT--VGKPMG--N  155 (224)
Q Consensus        93 aavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t--G~GrtG~~~~~~~~~g~~v---~pDi~~--~~K~l~--~  155 (224)
                      ++||+|+++++.|.+.+.++..+.+++.        +++  .+||+|+  +.+++++  +   .|||++  |||++|  |
T Consensus       247 ~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~--G~~e~~~--v~~~~~dii~~s~sKalg~~G  322 (481)
T PLN02822        247 RYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGR--GLSEHFG--VPIEKIDIITAAMGHALATEG  322 (481)
T ss_pred             EEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCC--ChHHHcC--CCCCCCeEEEecchhhhhhCC
Confidence            8999999999999999966666666665        444  4799997  4789998  7   799988  889998  7


Q ss_pred             CcccccceecHHHHHhhhcCCcccccCCCCc--HHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhhhc
Q psy6205         156 GHPVAAVITTKEIAKSFQETGVEYFNTYGGN--PVSCAVANAVMEVLET-ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       156 G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~--p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+    +++++++++.+...  .+.+||+++  |..++|++++|+.+++ +++.+++++++++|+++|+++
T Consensus       323 G~----i~g~~~ii~~~~~~--~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~  387 (481)
T PLN02822        323 GF----CTGSARVVDHQRLS--SSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDI  387 (481)
T ss_pred             eE----EEcCHHHHHHHHhc--CCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence            66    78999999988754  456788877  9999999999999976 789999999999999999874

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.58  E-value=1.8e-14  Score=127.50  Aligned_cols=125  Identities=15%  Similarity=0.177  Sum_probs=97.0

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh--CCccccccchhhhhcCCCCCC----chhcccccccCC
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV--GFGRVGTHWWAFQLQGDDIIP----DIVTVGKPMGNG  156 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t--G~GrtG~~~~~~~~~g~~v~p----Di~~~~K~l~~G  156 (224)
                      +...|++||+++++|.+++.+++.+.+++.        +++  ++|++|+  |+++++|  +.|    ||+++|++-+.|
T Consensus       138 ~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~--g~~~~~g--~~p~~~~Div~~slsk~~g  213 (392)
T PLN03227        138 QRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGR--GSLEHAG--LKPMVHAEIVTFSLENAFG  213 (392)
T ss_pred             CcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCC--cHHHHcC--CCCCCCceEEEeechhhhh
Confidence            567899999999999999977666666665        555  4677786  6899998  999    999987332223


Q ss_pred             ccc-ccceecHHHHHhhhcCCcccccCCCCc--HHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         157 HPV-AAVITTKEIAKSFQETGVEYFNTYGGN--PVSCAVANAVMEV-LETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       157 ~p~-~av~~~~~i~~~~~~~~~~~~~T~~~~--p~~~aaa~a~l~~-~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                       |+ |++++++++++.+...  .+.+||+++  |..|++++++++. ++++++.+++++++++|+++|++
T Consensus       214 -~~gg~v~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~  280 (392)
T PLN03227        214 -SVGGMTVGSEEVVDHQRLS--GSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTN  280 (392)
T ss_pred             -ccCcEEecCHHHHHHHHHh--CcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence             44 4567899998877543  455788887  8888888877755 56788999999999999999975

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.54  E-value=1.1e-13  Score=121.33  Aligned_cols=141  Identities=23%  Similarity=0.315  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH---------HHhC-CccccccchhhhhcCCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH---------VQVG-FGRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~---------v~tG-~GrtG~~~~~~~~~g~~v~p  144 (224)
                      +++||++++.....+.+-..|++|.|++|.|++.|.+++.+..+++         ..+| +|.+|+  +.++++|  +.|
T Consensus       155 ~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~Gr--G~~e~~g--~~~  230 (388)
T COG0156         155 LDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGR--GLAEHFG--LEP  230 (388)
T ss_pred             HHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCc--cHHHHhC--CCC
Confidence            4677777765311111567899999999999999999999999999         5555 688887  5788998  876


Q ss_pred             c---h--hccccccc--CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Q psy6205         145 D---I--VTVGKPMG--NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQL  216 (224)
Q Consensus       145 D---i--~~~~K~l~--~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l  216 (224)
                      +   |  .||||++|  ||+    +++++.+.|.+....+.+.+|.+.+|..++++.++|++++ .++..++++++..++
T Consensus       231 ~~vdi~~gTlsKAlGs~Gg~----v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~  306 (388)
T COG0156         231 EEVDIIVGTLGKALGSSGGY----IAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFF  306 (388)
T ss_pred             ccceEEEEEchhhhcccCce----eeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            5   3  38999999  357    9999999999998878899999999999999999999997 468999999999999


Q ss_pred             HHhhhhc
Q psy6205         217 HTPKKEN  223 (224)
Q Consensus       217 ~~~l~~l  223 (224)
                      ++.++..
T Consensus       307 ~~~~~~~  313 (388)
T COG0156         307 RSLLKAL  313 (388)
T ss_pred             HHHHHhc
Confidence            9766653

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.53  E-value=7.6e-14  Score=123.77  Aligned_cols=139  Identities=23%  Similarity=0.303  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh-C-CccccccchhhhhcCCCC--C
Q psy6205          76 QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV-G-FGRVGTHWWAFQLQGDDI--I  143 (224)
Q Consensus        76 ~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t-G-~GrtG~~~~~~~~~g~~v--~  143 (224)
                      ++++++++..  .++++.+|++|+++++.|.+.+.++..+.+++.        +++ | ||++|. .+ +++.+  +  .
T Consensus       165 ~~le~~l~~~--~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~-g~-~~~~~--~~~~  238 (407)
T PRK09064        165 AHLEELLAAA--DPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGG-GI-AERDG--LMDR  238 (407)
T ss_pred             HHHHHHHHhc--cCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCC-Ch-HHhcC--CCCC
Confidence            5677766532  225678999999999999999877777777776        665 7 699996 44 56666  5  5


Q ss_pred             Cchh--ccccccc--CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Q psy6205         144 PDIV--TVGKPMG--NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETE-NLREHALDVGNQLHT  218 (224)
Q Consensus       144 pDi~--~~~K~l~--~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~-~l~~~~~~~g~~l~~  218 (224)
                      |||+  ||||++|  ||+    +++++++++.+......+.+|++.+|.++++++++|+++++. ...++++++.++|.+
T Consensus       239 ~div~~t~sKa~g~~GG~----~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~  314 (407)
T PRK09064        239 IDIIEGTLAKAFGVMGGY----IAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKA  314 (407)
T ss_pred             CeEEEEecchhhhccCce----EecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            7988  9999998  555    788999998876543345568889999999999999999764 456889999999999


Q ss_pred             hhhhcC
Q psy6205         219 PKKENN  224 (224)
Q Consensus       219 ~l~~l~  224 (224)
                      .|+++|
T Consensus       315 ~L~~~g  320 (407)
T PRK09064        315 ALDAAG  320 (407)
T ss_pred             HHHHcC
Confidence            998753

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.50  E-value=1.5e-13  Score=123.14  Aligned_cols=134  Identities=16%  Similarity=0.132  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HH-hC-CccccccchhhhhcCCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQ-VG-FGRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~-tG-~GrtG~~~~~~~~~g~~v~p  144 (224)
                      +++|+++++.   ..++.+.||+|+|+++.|++.|.+++.+.+++.        .. .| +|++|.  +.++++|  +.|
T Consensus       236 ~~~Le~~L~~---~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~--G~~e~~g--~~~  308 (476)
T PLN02955        236 MYHLNSLLSS---CKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGG--GVAEEFN--CEA  308 (476)
T ss_pred             HHHHHHHHHh---CCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCC--cHHHHhC--CCC
Confidence            4667766654   345568899999999999999988888888776        22 23 466665  6788998  888


Q ss_pred             ch----hccccccc--CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Q psy6205         145 DI----VTVGKPMG--NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLH  217 (224)
Q Consensus       145 Di----~~~~K~l~--~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~  217 (224)
                      |+    .||||++|  ||+    +++++++++.+...+..+.+|.+.+|..++++++++++++ ++...++++++.++|+
T Consensus       309 di~ii~~TLsKA~G~~GGf----i~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr  384 (476)
T PLN02955        309 DVDLCVGTLSKAAGCHGGF----IACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFK  384 (476)
T ss_pred             CCcEEEEeCccchhccCce----eecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            87    68999999  778    8999999999987666677777888888899999999995 4567788999999988


Q ss_pred             Hh
Q psy6205         218 TP  219 (224)
Q Consensus       218 ~~  219 (224)
                      +.
T Consensus       385 ~~  386 (476)
T PLN02955        385 AL  386 (476)
T ss_pred             Hh
Confidence            74

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.49  E-value=3e-13  Score=119.79  Aligned_cols=139  Identities=22%  Similarity=0.307  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh-C-CccccccchhhhhcCCCC--C
Q psy6205          76 QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV-G-FGRVGTHWWAFQLQGDDI--I  143 (224)
Q Consensus        76 ~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t-G-~GrtG~~~~~~~~~g~~v--~  143 (224)
                      ++++++++..  .++++.+|++|++++..|.+.|.+++.+.+++.        +++ | +|++|.  +.+++++  +  .
T Consensus       164 ~~l~~~l~~~--~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~--g~~~~~~--~~~~  237 (402)
T TIGR01821       164 AHLEKLLQSV--DPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGG--GIAERDG--LMHR  237 (402)
T ss_pred             HHHHHHHHhc--cCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCC--ccchhcc--CCCC
Confidence            4566666532  234678999999999999999877777777776        655 5 477775  3356666  5  4


Q ss_pred             Cchh--ccccccc--CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Q psy6205         144 PDIV--TVGKPMG--NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETE-NLREHALDVGNQLHT  218 (224)
Q Consensus       144 pDi~--~~~K~l~--~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~-~l~~~~~~~g~~l~~  218 (224)
                      |||+  |++|++|  ||+    +++++++++.+......+.+|++.+|.++++++++|+.+++. .+.++.+++.++|++
T Consensus       238 ~div~~t~sKa~g~~GG~----i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~  313 (402)
T TIGR01821       238 IDIIEGTLAKAFGVVGGY----IAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKN  313 (402)
T ss_pred             CeEEEEechhhhccCCce----eecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            7888  9999998  555    788999999887543345568899999999999999999754 566778899999999


Q ss_pred             hhhhcC
Q psy6205         219 PKKENN  224 (224)
Q Consensus       219 ~l~~l~  224 (224)
                      .|+++|
T Consensus       314 ~L~~~g  319 (402)
T TIGR01821       314 LLEALG  319 (402)
T ss_pred             HHHHcC
Confidence            998754

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.47  E-value=4.9e-13  Score=118.70  Aligned_cols=138  Identities=23%  Similarity=0.287  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh-CC-ccccccchhhhhcCCCCC--
Q psy6205          76 QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV-GF-GRVGTHWWAFQLQGDDII--  143 (224)
Q Consensus        76 ~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t-G~-GrtG~~~~~~~~~g~~v~--  143 (224)
                      ++++++++..  .++++++|++|+++++.|.+.|.++..+.+++.        +++ |+ |++|. .+ +++++  +.  
T Consensus       164 ~~l~~~l~~~--~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~-g~-~~~~~--~~~~  237 (406)
T PRK13393        164 ADLERKLSDL--DPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGG-GI-AEREG--LADR  237 (406)
T ss_pred             HHHHHHHHhc--cCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCC-ch-hhhcC--CCCC
Confidence            4566666532  234678999999999999999977777777666        554 76 99996 44 47776  55  


Q ss_pred             Cchh--ccccccc--CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHH
Q psy6205         144 PDIV--TVGKPMG--NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETEN-LREHALDVGNQLHT  218 (224)
Q Consensus       144 pDi~--~~~K~l~--~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~-l~~~~~~~g~~l~~  218 (224)
                      +||+  ++||++|  ||+    +++++++.+.+......+.+|++++|.++++++++|+.+++.. ..+++++++++|++
T Consensus       238 ~~i~~~tlsKa~g~~GG~----~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~  313 (406)
T PRK13393        238 LTIIEGTLAKAFGVMGGY----ITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRA  313 (406)
T ss_pred             CeEEEEeCchhhcccCce----eeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            6887  9999998  555    7789999988875533445788999999999999999986542 34667789999999


Q ss_pred             hhhhc
Q psy6205         219 PKKEN  223 (224)
Q Consensus       219 ~l~~l  223 (224)
                      .|+++
T Consensus       314 ~L~~~  318 (406)
T PRK13393        314 RLDKA  318 (406)
T ss_pred             HHHHc
Confidence            99865

>PRK07505 hypothetical protein; Provisional

Probab=99.23  E-value=6e-11  Score=105.19  Aligned_cols=112  Identities=17%  Similarity=0.208  Sum_probs=80.9

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HH--hCCccccccchhhhhcCCCC-CCchh----ccccccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQ--VGFGRVGTHWWAFQLQGDDI-IPDIV----TVGKPMG  154 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~--tG~GrtG~~~~~~~~~g~~v-~pDi~----~~~K~l~  154 (224)
                      +..+++|+||+++.|++ .+.+++.+.+++.        ++  +||||+|+ +++.++++  + .||.+    +++|+++
T Consensus       179 ~~~~~vl~~p~~~~G~~-~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~-~~~~~~~~--~~~~d~~i~~~s~sK~~~  254 (402)
T PRK07505        179 NKTVAYVADGVYSMGGI-APVKELLRLQEKYGLFLYIDDAHGLSIYGKNGE-GYVRSELD--YRLNERTIIAASLGKAFG  254 (402)
T ss_pred             CCCEEEEEecccccCCc-CCHHHHHHHHHHcCCEEEEECcccccCcCCCCC-chHHHHcC--CCCCCCeEEEEechhhhh
Confidence            35789999999988654 4445555555554        64  78999997 67888887  7 79965    7999998


Q ss_pred             CCcccccce-ecHHHHHhhhcCCcccccCCCCc--HHHHHHHHHHHHHHhhhhHHHHH
Q psy6205         155 NGHPVAAVI-TTKEIAKSFQETGVEYFNTYGGN--PVSCAVANAVMEVLETENLREHA  209 (224)
Q Consensus       155 ~G~p~~av~-~~~~i~~~~~~~~~~~~~T~~~~--p~~~aaa~a~l~~~~~~~l~~~~  209 (224)
                      ++  -|.++ .++++.+.+...  .+.+||++|  +++|++++++|+++.++++.++.
T Consensus       255 ~~--Gg~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~  308 (402)
T PRK07505        255 AS--GGVIMLGDAEQIELILRY--AGPLAFSQSLNVAALGAILASAEIHLSEELDQLQ  308 (402)
T ss_pred             cc--CeEEEeCCHHHHHHHHHh--CCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHH
Confidence            53  13344 478888888653  445677766  58999999999988766554433

>PRK07179 hypothetical protein; Provisional

Probab=99.12  E-value=8.3e-10  Score=98.05  Aligned_cols=137  Identities=19%  Similarity=0.212  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhC--CccccccchhhhhcCCCCC-
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVG--FGRVGTHWWAFQLQGDDII-  143 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG--~GrtG~~~~~~~~~g~~v~-  143 (224)
                      +++|++.++.     .+.++|++|+++++.|.+.|.++..+.+++.        +++.  +|++|. . .+++++  +. 
T Consensus       170 ~~~l~~~l~~-----~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~-g-~~~~~~--~~~  240 (407)
T PRK07179        170 VDHLRRQIER-----HGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGA-G-LVAELG--LTS  240 (407)
T ss_pred             HHHHHHHHHh-----cCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCC-c-hHHhcC--CCC
Confidence            3555555531     2467899999999999999977777777766        6653  466765 2 355676  64 


Q ss_pred             -Cchhc--ccccccCCcccccceecHHHHHhhhcCCc--ccccCCCCcHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHH
Q psy6205         144 -PDIVT--VGKPMGNGHPVAAVITTKEIAKSFQETGV--EYFNTYGGNPVSCAVANAVMEVLETE-NLREHALDVGNQLH  217 (224)
Q Consensus       144 -pDi~~--~~K~l~~G~p~~av~~~~~i~~~~~~~~~--~~~~T~~~~p~~~aaa~a~l~~~~~~-~l~~~~~~~g~~l~  217 (224)
                       +|+++  ++|++|+  ++|++++++++++.+.....  .+.+|+  +|..++++.++++.+++. ++.++++++.++|+
T Consensus       241 ~vdi~~~S~sK~~g~--~~G~l~~~~~~~~~~~~~~~~~~~~~t~--~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~  316 (407)
T PRK07179        241 RVHFITASLAKAFAG--RAGIITCPRELAEYVPFVSYPAIFSSTL--LPHEIAGLEATLEVIESADDRRARLHANARFLR  316 (407)
T ss_pred             CCCEEEeechHhhhc--cCeEEEeCHHHHHHHHHhCcCeeeCCCC--CHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence             48865  7999975  47889999999887753321  233343  466777788889998654 58899999999999


Q ss_pred             HhhhhcC
Q psy6205         218 TPKKENN  224 (224)
Q Consensus       218 ~~l~~l~  224 (224)
                      +.|+++|
T Consensus       317 ~~L~~~g  323 (407)
T PRK07179        317 EGLSELG  323 (407)
T ss_pred             HHHHHcC
Confidence            9998753

>KOG1359|consensus

Probab=99.12  E-value=7.1e-10  Score=92.32  Aligned_cols=131  Identities=18%  Similarity=0.189  Sum_probs=111.4

Q ss_pred             CCCCceEEEEccccCCCCcccCCHHHHHHHHHH---------HHhCC-ccccccchhhhhcCCCCCCchh--cccccccC
Q psy6205          88 NGKRPCAFFAESLQSCGGQIIPPANYLREVYKH---------VQVGF-GRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN  155 (224)
Q Consensus        88 ~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~---------v~tG~-GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~  155 (224)
                      ...+.-.|+.|.++++.|++.|..+..+..+++         ..||| |.||.  +..|.+|..-.+||+  |+||++||
T Consensus       190 ~k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGr--Gt~E~~~vm~~vdiinsTLgKAlGg  267 (417)
T KOG1359|consen  190 CKMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGR--GTAEEFGVMGDVDIINSTLGKALGG  267 (417)
T ss_pred             hhheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCC--ChHHHhCCCCcceehhhhhhhhhcC
Confidence            345778899999999999999999988888888         88995 99997  678888822357876  89999994


Q ss_pred             ---CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhcC
Q psy6205         156 ---GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL-ETENLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       156 ---G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~-~~~~l~~~~~~~g~~l~~~l~~l~  224 (224)
                         ||    +.+++++.+.+++.++.|.++.+.+|.-...+.++++.+ ....+.++.+.+-+++++.++..|
T Consensus       268 a~GGy----ttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~aG  336 (417)
T KOG1359|consen  268 ASGGY----TTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAAG  336 (417)
T ss_pred             CCCCC----ccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Confidence               57    899999999999888888888889998888899999998 466889999999999999887653

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.10  E-value=9.9e-10  Score=97.66  Aligned_cols=142  Identities=21%  Similarity=0.243  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh-CC-ccccccchhhhhcCCCCCCc
Q psy6205          76 QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV-GF-GRVGTHWWAFQLQGDDIIPD  145 (224)
Q Consensus        76 ~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t-G~-GrtG~~~~~~~~~g~~v~pD  145 (224)
                      +++++.++..  ..++..+|++|++.+..|.+.+.+++.+.+++.        +++ |+ |++|. .+ .++.+.--.+|
T Consensus       165 ~~l~~~l~~~--~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~-g~-~~~~~~~~~~d  240 (410)
T PRK13392        165 ADLEEQLASV--DPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGG-GI-AERDGLMDRID  240 (410)
T ss_pred             HHHHHHHHhc--cCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCC-ch-hhhccCCCCCc
Confidence            3455555432  234678999999999999998877777777765        555 54 77775 33 45555111578


Q ss_pred             hh--cccccccC-CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhh
Q psy6205         146 IV--TVGKPMGN-GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETE-NLREHALDVGNQLHTPKK  221 (224)
Q Consensus       146 i~--~~~K~l~~-G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~-~l~~~~~~~g~~l~~~l~  221 (224)
                      ++  +++|++|. |   |.+++++++++.+......+..|.+.+|++++++.++|+.+++. ...+++++..++|++.|+
T Consensus       241 iv~~tlsK~~g~~G---G~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~  317 (410)
T PRK13392        241 MIQGTLAKAFGCLG---GYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLN  317 (410)
T ss_pred             EEEEEChHhhhccc---chhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            77  89999974 2   44778999999776543344467788999999999999988643 455678888999999998


Q ss_pred             hcC
Q psy6205         222 ENN  224 (224)
Q Consensus       222 ~l~  224 (224)
                      ++|
T Consensus       318 ~~g  320 (410)
T PRK13392        318 ANG  320 (410)
T ss_pred             HcC
Confidence            753

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.01  E-value=5.8e-09  Score=91.36  Aligned_cols=142  Identities=21%  Similarity=0.264  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh-C-CccccccchhhhhcCCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV-G-FGRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t-G-~GrtG~~~~~~~~~g~~v~p  144 (224)
                      ++++++.++.   .+.+.+++++++++...|.+.+.++..+.+++.        ++. | ++++|. .+ ...++.+..|
T Consensus       155 ~~~l~~~i~~---~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~-~~-~~~~~~~~~~  229 (385)
T PRK05958        155 VDALEALLAK---WRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGR-GL-AAEAGLAGEP  229 (385)
T ss_pred             HHHHHHHHHh---ccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCC-ch-HHhhCCCCCC
Confidence            3455655542   223578999999999889887777777777776        663 4 456665 22 3333322457


Q ss_pred             c---hhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhh
Q psy6205         145 D---IVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTPK  220 (224)
Q Consensus       145 D---i~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~l  220 (224)
                      |   +.+++|+++.  +-|++++++++++.+......+.++++.+|++++++.++|+.+++ +++.+++.++.+++.+.|
T Consensus       230 ~~i~~~s~sK~~~~--~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L  307 (385)
T PRK05958        230 DVILVGTLGKALGS--SGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGL  307 (385)
T ss_pred             ceEEEEechhhccc--CCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            7   5689999974  226688899998887543334456778899999999999999876 478899999999999999


Q ss_pred             hhc
Q psy6205         221 KEN  223 (224)
Q Consensus       221 ~~l  223 (224)
                      +++
T Consensus       308 ~~~  310 (385)
T PRK05958        308 RAL  310 (385)
T ss_pred             HHc
Confidence            865

>KOG1360|consensus

Probab=98.99  E-value=4.8e-09  Score=90.65  Aligned_cols=142  Identities=20%  Similarity=0.240  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH---------HHhCC-ccccccchhhhhcCCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH---------VQVGF-GRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~---------v~tG~-GrtG~~~~~~~~~g~~v~p  144 (224)
                      +++|+++++..  .+...--|-.|.|.++.|.+.|.++.++...++         ...|+ |--|.  +.-|+-|.--+-
T Consensus       289 ~~hL~~lL~~~--~~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGa--GvgerdGvm~kv  364 (570)
T KOG1360|consen  289 LDHLEQLLQSS--PKSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGA--GVGERDGVMHKV  364 (570)
T ss_pred             HHHHHHHHHhC--CCCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCC--CccccCCcchhh
Confidence            67788888753  334445667899999999999999999998888         44553 55553  345666622257


Q ss_pred             chh--ccccccc--CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHH
Q psy6205         145 DIV--TVGKPMG--NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETE---NLREHALDVGNQLH  217 (224)
Q Consensus       145 Di~--~~~K~l~--~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~---~l~~~~~~~g~~l~  217 (224)
                      ||+  |+||+.|  |||    +..+..+.|.+++....|++|.+.+|.-++-|+++++++..+   .+...=++.-.+++
T Consensus       365 DiIsGTLgKafGcVGGY----IAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~k  440 (570)
T KOG1360|consen  365 DIISGTLGKAFGCVGGY----IAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVK  440 (570)
T ss_pred             hhcccchhhhcccccce----ehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            888  7999999  568    889999999998776678899999999999999999999532   45566677788888


Q ss_pred             HhhhhcC
Q psy6205         218 TPKKENN  224 (224)
Q Consensus       218 ~~l~~l~  224 (224)
                      +.|.++|
T Consensus       441 q~l~~~G  447 (570)
T KOG1360|consen  441 QLLMELG  447 (570)
T ss_pred             HHHHHcC
Confidence            8888765

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=98.98  E-value=5.9e-09  Score=91.56  Aligned_cols=143  Identities=18%  Similarity=0.247  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh-C-CccccccchhhhhcCC-CCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV-G-FGRVGTHWWAFQLQGD-DII  143 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t-G-~GrtG~~~~~~~~~g~-~v~  143 (224)
                      +++|+++++.....+++..+|+++++.++.|.+.|-++..+.+++.        +|+ | +|++|+ .+ ...++. ++.
T Consensus       127 ~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~-g~-~~~~~~~~~~  204 (370)
T PRK05937        127 LDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGK-GF-CHSLGYENFY  204 (370)
T ss_pred             HHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCC-ch-HHhhCCCCCc
Confidence            4566776654321223345688999999999999988888888876        554 5 677775 32 223330 133


Q ss_pred             CchhcccccccC-CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhh
Q psy6205         144 PDIVTVGKPMGN-GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPK  220 (224)
Q Consensus       144 pDi~~~~K~l~~-G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l  220 (224)
                      +|+.|++|++|. |   +++++.+++.+.+......+.++.+.+|.+++++.++++++++  +...++++++.++|.+.|
T Consensus       205 ~~~~tlsK~~g~~G---~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l  281 (370)
T PRK05937        205 AVLVTYSKALGSMG---AALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKF  281 (370)
T ss_pred             EEEEechhhhhcCc---eEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence            688999999975 4   3367777776665532224556677899999999999999964  346788889999998877


Q ss_pred             hh
Q psy6205         221 KE  222 (224)
Q Consensus       221 ~~  222 (224)
                      +.
T Consensus       282 ~~  283 (370)
T PRK05937        282 SS  283 (370)
T ss_pred             CC
Confidence            53

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=98.92  E-value=1.8e-08  Score=88.50  Aligned_cols=140  Identities=14%  Similarity=0.187  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh-C-CccccccchhhhhcCCCCCCc
Q psy6205          76 QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV-G-FGRVGTHWWAFQLQGDDIIPD  145 (224)
Q Consensus        76 ~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t-G-~GrtG~~~~~~~~~g~~v~pD  145 (224)
                      +++++.+...  ...+.++|+++++++..|.+.+.++..+.+++.        ++. | ++++|.  +...+++  +.||
T Consensus       150 ~~l~~~l~~~--~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~--~~~~  223 (385)
T TIGR01825       150 DDLDRVLREN--PSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGR--GTVHHFG--LEDK  223 (385)
T ss_pred             HHHHHHHHhh--ccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCC--ccHhhcC--CCcC
Confidence            4555555421  224678999999999999988877777777776        553 3 566664  3455666  6666


Q ss_pred             h----hcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhh
Q psy6205         146 I----VTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTPK  220 (224)
Q Consensus       146 i----~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~l  220 (224)
                      .    .+++|+++.  +.|.+++++++++.+......+..+...+|..++++.++|+.+++ +++.++++++.+++.+.|
T Consensus       224 ~~i~~~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L  301 (385)
T TIGR01825       224 VDIQVGTLSKAIGV--VGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGL  301 (385)
T ss_pred             CcEEEEeccHHhhc--CCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            3    689999963  225578899999888643222333445688999999999998853 578899999999999999


Q ss_pred             hhc
Q psy6205         221 KEN  223 (224)
Q Consensus       221 ~~l  223 (224)
                      +++
T Consensus       302 ~~~  304 (385)
T TIGR01825       302 GKL  304 (385)
T ss_pred             HHc
Confidence            875

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PLN02483 serine palmitoyltransferase

Probab=98.92  E-value=1.5e-08  Score=92.21  Aligned_cols=126  Identities=18%  Similarity=0.256  Sum_probs=94.7

Q ss_pred             ceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh-C-CccccccchhhhhcCCCCCC---chh--cccccccC-
Q psy6205          92 PCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV-G-FGRVGTHWWAFQLQGDDIIP---DIV--TVGKPMGN-  155 (224)
Q Consensus        92 iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t-G-~GrtG~~~~~~~~~g~~v~p---Di~--~~~K~l~~-  155 (224)
                      -..|++|++.++.|.+.+.++..+.+++.        +++ | +|++|.  +.+++++  +.|   ||+  +++|++|. 
T Consensus       241 k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~--g~~~~~~--v~~~~~dI~~~SfSKs~g~~  316 (489)
T PLN02483        241 KIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGR--GVCELLG--VDPADVDIMMGTFTKSFGSC  316 (489)
T ss_pred             eEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCC--chHHhcC--CCcccCcEEEEecchhcccC
Confidence            45889999999999999988998888887        432 2 578886  4667887  654   676  89999973 


Q ss_pred             CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHhhhhcC
Q psy6205         156 GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETE-------NLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       156 G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~-------~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      |   |.+++++++++.+......+.++.+.+|..+++++++|+++..+       ...++++++.++|++.|+++|
T Consensus       317 G---G~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G  389 (489)
T PLN02483        317 G---GYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMG  389 (489)
T ss_pred             c---eEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCC
Confidence            2   44889999999987542222233345888898999999988532       356788899999999998753

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=98.86  E-value=3.9e-08  Score=86.64  Aligned_cols=145  Identities=21%  Similarity=0.278  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HH-hCC-ccccccchhhhhcCCCCCCc
Q psy6205          76 QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQ-VGF-GRVGTHWWAFQLQGDDIIPD  145 (224)
Q Consensus        76 ~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~-tG~-GrtG~~~~~~~~~g~~v~pD  145 (224)
                      +++++.++.......+...|+++++....|.+.+.++..+.+++.        ++ .|+ |.+|.  ...+..+..-.+|
T Consensus       155 ~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~--~~~~~~~~~~~~d  232 (393)
T TIGR01822       155 ADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGR--GSHELCGVMGRVD  232 (393)
T ss_pred             HHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCC--chHHhcCCCCCCe
Confidence            455555543211223678999999999999988877777777776        55 443 45553  2334454111367


Q ss_pred             hh--cccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhhh
Q psy6205         146 IV--TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       146 i~--~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ++  +++|.++| ...|++++++++++.+......+..+.+.+|..+++++++|+.+++ ++..++++++.+++.+.|++
T Consensus       233 i~~~s~sK~l~g-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~  311 (393)
T TIGR01822       233 IITGTLGKALGG-ASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEA  311 (393)
T ss_pred             EEEEEChHHhhC-CCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            77  78999975 4678899999999988653222333334467778888999998854 57889999999999999976


Q ss_pred             c
Q psy6205         223 N  223 (224)
Q Consensus       223 l  223 (224)
                      +
T Consensus       312 ~  312 (393)
T TIGR01822       312 A  312 (393)
T ss_pred             c
Confidence            4

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=98.83  E-value=6.5e-08  Score=85.14  Aligned_cols=143  Identities=22%  Similarity=0.315  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HH-hCC-ccccccchhhhhcCCCC--C
Q psy6205          76 QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQ-VGF-GRVGTHWWAFQLQGDDI--I  143 (224)
Q Consensus        76 ~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~-tG~-GrtG~~~~~~~~~g~~v--~  143 (224)
                      +++++.++.......++.+|+++++++..|...+-.+..+.+++.        ++ .|+ +++|.  +....++  +  .
T Consensus       159 ~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~--~~~~~~~--~~~~  234 (397)
T PRK06939        159 ADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGR--GTVEHFG--VMDR  234 (397)
T ss_pred             HHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCC--CHHHHcC--CCCC
Confidence            445554442111223678899999999988876666676667666        55 354 44553  2344555  4  4


Q ss_pred             Cchh--cccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhh
Q psy6205         144 PDIV--TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTPK  220 (224)
Q Consensus       144 pDi~--~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~l  220 (224)
                      +|++  +++|.++|+ ++|.+++++++++.+......+..+.+.+|..++++.++++.+++ +++.++++++.+++.+.|
T Consensus       235 ~~i~~~S~sK~~~g~-r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L  313 (397)
T PRK06939        235 VDIITGTLGKALGGA-SGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGM  313 (397)
T ss_pred             CcEEEEECHHHhCcc-CceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            6787  899999654 778899999999988653222223444567778889999998864 478889999999999998


Q ss_pred             hhc
Q psy6205         221 KEN  223 (224)
Q Consensus       221 ~~l  223 (224)
                      +++
T Consensus       314 ~~~  316 (397)
T PRK06939        314 TAA  316 (397)
T ss_pred             HHc
Confidence            765

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=98.66  E-value=2.4e-08  Score=88.96  Aligned_cols=81  Identities=31%  Similarity=0.442  Sum_probs=62.6

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCCC---ccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCP---DVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P---~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      ++||.|+||||+|||+|||||++++|+.|....+..++.+++.++.+...+.   ++.|...+-..  +++..+..++-|
T Consensus       362 ~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviRi~PPL~i--s~e~~d~~l~il  439 (447)
T COG0160         362 EKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTI--SDEELDEGLDIL  439 (447)
T ss_pred             hhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEEEeCCccc--CHHHHHHHHHHH
Confidence            3599999999999999999999999999999888888888877776665553   66665544332  356667777777


Q ss_pred             HHHHHH
Q psy6205          79 QDLIEA   84 (224)
Q Consensus        79 ~~~~~~   84 (224)
                      ++.++.
T Consensus       440 ~~al~~  445 (447)
T COG0160         440 EEALKE  445 (447)
T ss_pred             HHHHHh
Confidence            777653

>KOG1403|consensus

Probab=98.64  E-value=2.3e-08  Score=83.76  Aligned_cols=42  Identities=50%  Similarity=0.849  Sum_probs=38.0

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCC
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPP   43 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~   43 (224)
                      ++|++||||||.|||||||||+|.++++|++..+.+++.+..
T Consensus       353 ~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlk  394 (452)
T KOG1403|consen  353 QKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLK  394 (452)
T ss_pred             hhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHH
Confidence            359999999999999999999999999999988888777754

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=98.61  E-value=5.3e-07  Score=78.07  Aligned_cols=140  Identities=19%  Similarity=0.229  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHccCC-CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCcccccc-chhhhhcCCCCCCc
Q psy6205          76 QDVQDLIEAMGRNG-KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTH-WWAFQLQGDDIIPD  145 (224)
Q Consensus        76 ~~l~~~~~~~~~~~-~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~-~~~~~~~g~~v~pD  145 (224)
                      +++++.++.   .. .+.++++++++....|.+.+.++..+.+++.        +++ +|+.+.. ......++  +.||
T Consensus       133 ~~l~~~~~~---~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~--~~~~  206 (360)
T TIGR00858       133 EHLERLLEK---NRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFG--LKPE  206 (360)
T ss_pred             HHHHHHHHH---cccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcC--CCcc
Confidence            455555542   22 3578999999988888887777777777666        553 4333311 12234555  6666


Q ss_pred             -----hhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHh
Q psy6205         146 -----IVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTP  219 (224)
Q Consensus       146 -----i~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~  219 (224)
                           +.+++|+++.  +-|++++++++++.+......+..+.+.+|.+++++.++++.+++ +++.++++++.++|.+.
T Consensus       207 ~~~i~i~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~  284 (360)
T TIGR00858       207 PVDIQVGTLSKALGS--YGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRAG  284 (360)
T ss_pred             CCcEEEEechhhhhc--cCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence                 6689999975  225688899998877543223334556788889999999998864 46889999999999999


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |+++
T Consensus       285 L~~~  288 (360)
T TIGR00858       285 LEAL  288 (360)
T ss_pred             HHHc
Confidence            9875

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=98.59  E-value=3.3e-07  Score=80.29  Aligned_cols=125  Identities=18%  Similarity=0.147  Sum_probs=84.1

Q ss_pred             ceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchh---ccccccc-CCccc
Q psy6205          92 PCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIV---TVGKPMG-NGHPV  159 (224)
Q Consensus        92 iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~---~~~K~l~-~G~p~  159 (224)
                      ..++++...+...|.+.+..+..+.++..        +.++|++.|. ....+..+  ..|+++   +|||.+| .|+++
T Consensus       161 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~-~~~~~~~~--~~~~~i~~~SfSK~~g~~GlRi  237 (368)
T PRK03317        161 PDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGT-PSALTLLP--EYPRLVVSRTMSKAFAFAGGRL  237 (368)
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCC-cCHHHHHH--hCCCEEEEEechhhhccchhhh
Confidence            33455554466678777655554444432        7777876664 34455554  568887   8999998 68999


Q ss_pred             ccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhhhc
Q psy6205         160 AAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       160 ~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |++++++++++.+...    ..+|..++++++++.++|+..++ .+..+++++.-+++.+.|++.
T Consensus       238 G~~~~~~~~~~~l~~~----~~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  298 (368)
T PRK03317        238 GYLAAAPAVVDALRLV----RLPYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLREL  298 (368)
T ss_pred             hhhhCCHHHHHHHHhc----CCCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999988643    24778899999999999875432 122333455555566666543

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=98.40  E-value=5.4e-06  Score=71.61  Aligned_cols=144  Identities=22%  Similarity=0.232  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCC-CCCCch
Q psy6205          76 QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGD-DIIPDI  146 (224)
Q Consensus        76 ~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~-~v~pDi  146 (224)
                      ++++++++... ++.+.++|++++++...|...+-++..+.+++.        ++. +|..+........+.. ...+|+
T Consensus       118 ~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~~~~i  195 (349)
T cd06454         118 EDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTDDVDI  195 (349)
T ss_pred             HHHHHHHHHhh-ccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccccCcE
Confidence            45677766432 235778999999998889887766666666666        432 3323210001112210 123576


Q ss_pred             h--cccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhhhc
Q psy6205         147 V--TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       147 ~--~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +  +++|.++.  +-|.++.++++++.+......+..+.+.++..++++.++|+.+++ ++..++++++.+++.+.|+++
T Consensus       196 ~~~s~sK~~~~--~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  273 (349)
T cd06454         196 IMGTLGKAFGA--VGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL  273 (349)
T ss_pred             EEeechhhhcc--cCCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence            5  58999974  335588899998877654223344557889999999999999876 678899999999999998765

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>KOG1357|consensus

Probab=98.39  E-value=2.2e-06  Score=75.39  Aligned_cols=142  Identities=15%  Similarity=0.178  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHc------cC-CCCceEEEEccccCCCCcccCCHHHHHHHHHH---------HHhC-Cccccccchhhhh
Q psy6205          75 AQDVQDLIEAMG------RN-GKRPCAFFAESLQSCGGQIIPPANYLREVYKH---------VQVG-FGRVGTHWWAFQL  137 (224)
Q Consensus        75 ~~~l~~~~~~~~------~~-~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~---------v~tG-~GrtG~~~~~~~~  137 (224)
                      ..+||++++..-      .+ +-+..-||+|.|.++.|.+..+|+.....++.         ...| .|+||+  +.+++
T Consensus       253 m~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGr--gvce~  330 (519)
T KOG1357|consen  253 MQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGR--GVCEY  330 (519)
T ss_pred             HHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCc--ceeec
Confidence            456666665421      11 34567899999999999999999999988888         4555 689997  68999


Q ss_pred             cCCCCCC---chh--ccccccc--CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-------h
Q psy6205         138 QGDDIIP---DIV--TVGKPMG--NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-------E  203 (224)
Q Consensus       138 ~g~~v~p---Di~--~~~K~l~--~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-------~  203 (224)
                      +|  +.|   ||+  |+-|+.|  ||+    +.+++++.+.+...+..+.+....+|..+...+..|+++.-       .
T Consensus       331 ~g--~d~~dvDImMGtftKSfga~GGy----iagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~  404 (519)
T KOG1357|consen  331 FG--VDPEDVDIMMGTFTKSFGAAGGY----IAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGR  404 (519)
T ss_pred             cC--CCchhheeecceehhhcccccce----ecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHH
Confidence            98  654   433  7889998  347    89999999998765434445556778888899999999863       2


Q ss_pred             hHHHHHHHHHHHHHHhhhhcC
Q psy6205         204 NLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       204 ~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      ...++++++..+++..|+.+|
T Consensus       405 ~k~~~l~~ns~yfr~~l~~~g  425 (519)
T KOG1357|consen  405 QKIERLAENSRYFRWELQKMG  425 (519)
T ss_pred             HHHHHHHhhhHHHHHhhhcCc
Confidence            467788899999999998764

>cd00609 AAT_like Aspartate aminotransferase family

Probab=98.34  E-value=4.9e-06  Score=71.36  Aligned_cols=130  Identities=19%  Similarity=0.186  Sum_probs=92.3

Q ss_pred             CCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchh-hhhcCCCCCCchh--cccccc
Q psy6205          89 GKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWA-FQLQGDDIIPDIV--TVGKPM  153 (224)
Q Consensus        89 ~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~-~~~~g~~v~pDi~--~~~K~l  153 (224)
                      .+++.+|++++.+...|.+. +.+.++++.++            ++.++...+. ... ....+ ...-|++  +++|.+
T Consensus       130 ~~~~~~v~i~~~~~~tG~~~-~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~-~~~~~~~~~-~~~~~~~~~s~~K~~  206 (350)
T cd00609         130 TPKTKLLYLNNPNNPTGAVL-SEEELEELAELAKKHGILIISDEAYAELVYDGE-PPPALALLD-AYERVIVLRSFSKTF  206 (350)
T ss_pred             CccceEEEEECCCCCCCccc-CHHHHHHHHHHHHhCCeEEEEecchhhceeCCc-ccccccCcC-ccCcEEEEeeccccc
Confidence            35789999999777788765 45566655555            6666655554 221 01111 0112443  689999


Q ss_pred             c-CCcccccceecH-HHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         154 G-NGHPVAAVITTK-EIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL--ETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       154 ~-~G~p~~av~~~~-~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~--~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      + +|.++|++++++ ++.+.+...  ....|+..++.++.++.+.|+..  .-+.+.++++++.+++.+.|+++
T Consensus       207 ~~~g~~~G~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  278 (350)
T cd00609         207 GLPGLRIGYLIAPPEELLERLKKL--LPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKEL  278 (350)
T ss_pred             CCcccceEEEecCHHHHHHHHHHH--HHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9 789999999999 888888654  33457888899999999999887  34567788889999999998865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=98.18  E-value=1.7e-05  Score=69.91  Aligned_cols=119  Identities=21%  Similarity=0.218  Sum_probs=77.4

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHh---CCccccccchhhhhcCCCCCCchhc--cc--
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQV---GFGRVGTHWWAFQLQGDDIIPDIVT--VG--  150 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~t---G~GrtG~~~~~~~~~g~~v~pDi~~--~~--  150 (224)
                      +++++|++++.. ..|.+.   +++++++++            ++.   +++++|       .    ..+|+++  ++  
T Consensus       158 ~~t~~viv~~~~-~~G~~~---~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~-------~----~~~d~~~~s~~K~  222 (398)
T cd00613         158 EEVAALMVQYPN-TLGVFE---DLIKEIADIAHSAGALVYVDGDNLNLTGLKPPG-------E----YGADIVVGNLQKT  222 (398)
T ss_pred             CCeEEEEEECCC-CCceec---chHHHHHHHHHhcCCEEEEEeccccccCCCChH-------H----cCCCEEEeecccc
Confidence            468899999864 568773   456666666            221   122222       1    2379886  33  


Q ss_pred             -ccccCCcc-cccceecHHHHHhhhcCC---------------------------cccccCCCCcHHHHHHHHHHHHHHh
Q psy6205         151 -KPMGNGHP-VAAVITTKEIAKSFQETG---------------------------VEYFNTYGGNPVSCAVANAVMEVLE  201 (224)
Q Consensus       151 -K~l~~G~p-~~av~~~~~i~~~~~~~~---------------------------~~~~~T~~~~p~~~aaa~a~l~~~~  201 (224)
                       |++|+|.| .|.+.+++++.+.+....                           ....+||+++++.++++.++++.+.
T Consensus       223 ~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~  302 (398)
T cd00613         223 GVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLG  302 (398)
T ss_pred             CCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhC
Confidence             55555544 445556667777642110                           0113578899999999999999886


Q ss_pred             hh---hHHHHHHHHHHHHHHhhhhc
Q psy6205         202 TE---NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       202 ~~---~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++   ++.+++++++++|+++|+++
T Consensus       303 ~~g~~~~~~~~~~~~~~l~~~L~~~  327 (398)
T cd00613         303 PEGLKEIAERAHLNANYLAKRLKEV  327 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            54   45688999999999999875

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=97.99  E-value=1.3e-05  Score=71.40  Aligned_cols=31  Identities=52%  Similarity=0.827  Sum_probs=28.7

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCcc
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPAT   32 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~   32 (224)
                      .+||+|+||||+|||.||||+++++++.|+.
T Consensus       362 ~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~  392 (449)
T COG0161         362 ADHPLVGDVRGLGLIGAIELVADKATKTPFE  392 (449)
T ss_pred             ccCCcEEEeeccceEEEEEEecccccccchh
Confidence            4689999999999999999999999999873

>KOG1404|consensus

Probab=97.94  E-value=3.9e-06  Score=72.68  Aligned_cols=37  Identities=51%  Similarity=0.837  Sum_probs=28.5

Q ss_pred             CCCcceeeccCCceeEEEEeecC-CCCCCccccchhhh
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCR-KQKTPATSEAQHVI   39 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~-~t~~p~~~~a~~l~   39 (224)
                      +||+||||||+|||+|+|+|+|+ +.+.|.......+.
T Consensus       355 ~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~i~  392 (442)
T KOG1404|consen  355 KHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAVIG  392 (442)
T ss_pred             cCCceeecccceeEEEEEEecccCCCCCcchHHHHHHH
Confidence            59999999999999999999998 55555554433333

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=97.85  E-value=0.00025  Score=62.72  Aligned_cols=144  Identities=13%  Similarity=0.053  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHH-ccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAM-GRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~-~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      .+++++.++.. ....+++.+|+++-..+..|.+.+-++..+.+++.       -..++|....   ....+|  +.-.+
T Consensus       141 ~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~---~~~~~g--~D~~~  215 (387)
T PRK09331        141 PEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPV---DGKKLG--ADFIV  215 (387)
T ss_pred             HHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCC---CHHHcC--CCEEE
Confidence            35555555421 11224688899998888889888888888888776       2222332221   222344  32334


Q ss_pred             hcccccccCCcccccceecHHHHHhhhcCCcccc------cCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHh
Q psy6205         147 VTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYF------NTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTP  219 (224)
Q Consensus       147 ~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~------~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~  219 (224)
                      .++.|.++++.++|.+++++++.+.+......+.      .+.+-++...++++++|+.+.+ .+..++..++.+++++.
T Consensus       216 ~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~  295 (387)
T PRK09331        216 GSGHKSMAASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDE  295 (387)
T ss_pred             eeCcccccCCCCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999877788999999998887654321111      1112334456666777777643 34566667888899999


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |+++
T Consensus       296 L~~l  299 (387)
T PRK09331        296 LEKI  299 (387)
T ss_pred             HhcC
Confidence            9876

>PRK05965 hypothetical protein; Provisional

Probab=97.61  E-value=9.6e-05  Score=66.96  Aligned_cols=87  Identities=22%  Similarity=0.178  Sum_probs=51.6

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCcc---ccchhhhccCCCcceeecCCC-ccccCCCCCCCCCChhHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPAT---SEAQHVITRPPVRMSTEAPCP-DVYRGKYPADKYPDEDLGVKYAQD   77 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~---~~a~~l~~~~~~~~~~~vp~P-~~yr~~~~~~~~~~~~~~~~~~~~   77 (224)
                      ++||.|+||||+|+|+|+||+.+..++.++.   ..+..+....+..+.+..+.. +..+-..+...  +++..++.++.
T Consensus       363 ~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g~~~i~~~PpL~i--t~~ei~~~~~~  440 (459)
T PRK05965        363 RAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCC--TEGEFDLIFER  440 (459)
T ss_pred             ccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecCCcEEEEECCCcC--CHHHHHHHHHH
Confidence            4589999999999999999987665554432   123334333333344433322 22332212111  26777788888


Q ss_pred             HHHHHHHHccCCC
Q psy6205          78 VQDLIEAMGRNGK   90 (224)
Q Consensus        78 l~~~~~~~~~~~~   90 (224)
                      |++.++.+...++
T Consensus       441 l~~~l~~~~~~~~  453 (459)
T PRK05965        441 TRKTLDDVLADPD  453 (459)
T ss_pred             HHHHHHHHhcCcc
Confidence            8888877654444

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=97.59  E-value=0.00056  Score=60.04  Aligned_cols=119  Identities=16%  Similarity=0.175  Sum_probs=71.3

Q ss_pred             CceEEEE-ccccCCCCcccCCHHHHHHHHHH----------HHhCCccccccchhhhhcCCCCCCchh---ccccccc-C
Q psy6205          91 RPCAFFA-ESLQSCGGQIIPPANYLREVYKH----------VQVGFGRVGTHWWAFQLQGDDIIPDIV---TVGKPMG-N  155 (224)
Q Consensus        91 ~iaavi~-Epv~~~~G~~~~~~~~l~~~~~~----------v~tG~GrtG~~~~~~~~~g~~v~pDi~---~~~K~l~-~  155 (224)
                      ++.++++ .|. .-.|.+.+..++.+.++..          +..-|+..|. ..   .+. ...|+++   +|||.+| .
T Consensus       155 ~~~~i~l~~P~-NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~-~~---~~~-~~~~~~i~~~SfSK~~g~~  228 (369)
T PRK08153        155 NAPLVYLANPD-NPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGA-AP---PID-TDDPNVIRMRTFSKAYGLA  228 (369)
T ss_pred             CCcEEEEeCCC-CCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCccc-ch---hhh-hcCCCEEEEecchHhccCc
Confidence            4445544 553 2257777776665555432          4333433332 11   111 0234433   7999998 7


Q ss_pred             CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHhhhh
Q psy6205         156 GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALD----VGNQLHTPKKE  222 (224)
Q Consensus       156 G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~----~g~~l~~~l~~  222 (224)
                      |+.+|++++++++++.+...    ..+++.++++.+++.+.|+   ++.+.+++++    .-+++.+.|++
T Consensus       229 GlRiG~~v~~~~~~~~l~~~----~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~~~L~~  292 (369)
T PRK08153        229 GARVGYAIGAPGTIKAFDKV----RNHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARDRIAAIARA  292 (369)
T ss_pred             chheeeeecCHHHHHHHHHh----hcCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988643    2457789999999988885   3334444443    44444444443

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=97.59  E-value=0.00044  Score=60.36  Aligned_cols=76  Identities=14%  Similarity=0.156  Sum_probs=55.8

Q ss_pred             Cchh--cccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         144 PDIV--TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       144 pDi~--~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +|++  +++|+++|- -+|.+++++++.+.+......+  .|+.+|.++++++++|+.+..+...+.++++..++.+.++
T Consensus       195 ~divv~s~SKalaG~-r~G~v~~~~~li~~l~~~~~~~--~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~  271 (346)
T TIGR03576       195 ADLVVTSTDKLMDGP-RGGLLAGRKELVDKIKSVGEQF--GLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFD  271 (346)
T ss_pred             CcEEEeccchhcccc-ceEEEEeCHHHHHHHHHhhcCc--ccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            4544  789988543 3566999999999987653333  3346888999999999887656677788888877777665


Q ss_pred             h
Q psy6205         222 E  222 (224)
Q Consensus       222 ~  222 (224)
                      .
T Consensus       272 ~  272 (346)
T TIGR03576       272 K  272 (346)
T ss_pred             h
Confidence            3

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.54  E-value=0.00011  Score=66.80  Aligned_cols=81  Identities=25%  Similarity=0.249  Sum_probs=49.3

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccc---cchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATS---EAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~---~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      ++||.|+||||+|||+|+||+.+..+++++..   .+..+....+..+.+..+..+..|...+..-  +++..++.++-|
T Consensus       384 ~~~~~i~dvRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~vi~~~PpL~i--t~~ei~~~~~~l  461 (472)
T PRK08742        384 GEHPHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPLGDVLYWMPPYCV--DEAQLALLADTT  461 (472)
T ss_pred             hcCCCeeeEeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEecCCEEEEECCCCC--CHHHHHHHHHHH
Confidence            45899999999999999999987766655432   1223333333334444343344443222211  266777778888


Q ss_pred             HHHHHH
Q psy6205          79 QDLIEA   84 (224)
Q Consensus        79 ~~~~~~   84 (224)
                      ++.++.
T Consensus       462 ~~~l~~  467 (472)
T PRK08742        462 RHAIDE  467 (472)
T ss_pred             HHHHHH
Confidence            877764

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=97.54  E-value=0.00026  Score=62.25  Aligned_cols=122  Identities=11%  Similarity=0.024  Sum_probs=78.1

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchh--cccccccC-C-ccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN-G-HPVAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~-G-~p~~a  161 (224)
                      ++.+|++|.+....|.+.+.+++.+.+++.     |-.-+ -++. +  ...+.  ..+|++  +++|.++| | ...|+
T Consensus       125 ~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~-~~~~-~--~~~~~--~g~Divv~S~tK~l~g~~~~~gG~  198 (369)
T cd00614         125 ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTF-ATPY-L--QRPLE--LGADIVVHSATKYIGGHSDVIAGV  198 (369)
T ss_pred             CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC-cchh-c--CChhh--hCCcEEEeccceeccCCCCceEEE
Confidence            678999999998889888877776666665     11111 1121 1  11122  347887  78999986 4 67888


Q ss_pred             ceecH-HHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         162 VITTK-EIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       162 v~~~~-~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +++++ ++.+.+...  ....++..+|..+++++..|+.+..  ..++..++.+++.+.|++
T Consensus       199 v~~~~~~l~~~l~~~--~~~~g~~~~p~~a~~~l~~l~tl~~--r~~~~~~na~~la~~L~~  256 (369)
T cd00614         199 VVGSGEALIQRLRFL--RLALGTILSPFDAWLLLRGLKTLPL--RMERHSENALKVAEFLEK  256 (369)
T ss_pred             EEeCcHHHHHHHHHH--HHhhCCCCCHHHHHHHHcCCCCHHH--HHHHHHHHHHHHHHHHHc
Confidence            99977 888777643  1123456788888888777765532  355555566666666654

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>KOG1358|consensus

Probab=97.53  E-value=0.00013  Score=63.40  Aligned_cols=125  Identities=19%  Similarity=0.195  Sum_probs=90.9

Q ss_pred             ceEEEEccccCCCCcccCCHHHHHHHHHH---------HHhC-CccccccchhhhhcCCCC-CCchhc--cccccc--CC
Q psy6205          92 PCAFFAESLQSCGGQIIPPANYLREVYKH---------VQVG-FGRVGTHWWAFQLQGDDI-IPDIVT--VGKPMG--NG  156 (224)
Q Consensus        92 iaavi~Epv~~~~G~~~~~~~~l~~~~~~---------v~tG-~GrtG~~~~~~~~~g~~v-~pDi~~--~~K~l~--~G  156 (224)
                      --.+++|.+.-+.|.+.|.++.++.-.+.         .+.| .|+||+  +-.+|++.++ .-||++  |.-+|+  ||
T Consensus       234 Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~Gr--GvteH~~v~~~~iDiv~~sm~~alas~Gg  311 (467)
T KOG1358|consen  234 RRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGR--GVTEHFGVPITDIDIVTASMETALASGGG  311 (467)
T ss_pred             eEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCc--cccccCCCCccceeeeeecccccccccCc
Confidence            45789999999999999999999988888         4555 699997  6899998332 256665  455555  44


Q ss_pred             cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhh
Q psy6205         157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +    ++++.-+.+.-+=.+..+-++-+..|+...||..++++++ +++..+.++.....+.+.|+.
T Consensus       312 F----c~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~  374 (467)
T KOG1358|consen  312 F----CAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSS  374 (467)
T ss_pred             e----eecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhhhhhccccccchhhhc
Confidence            6    5665555443221233455677788999999999999996 467788888877777777654

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=97.44  E-value=0.002  Score=56.57  Aligned_cols=143  Identities=10%  Similarity=0.088  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHc-cCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMG-RNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~-~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +++|++.++... ...++..+|+++-..+..|.+.+.++..+.+++.       -..++|..+.   ....    ..+|+
T Consensus       129 ~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~---~~~~----~~~di  201 (370)
T TIGR02539       129 PEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPV---SAKE----IGADF  201 (370)
T ss_pred             HHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCC---CHHH----cCCCE
Confidence            455555554211 1113566788776667778888888888877776       2222332221   0111    23675


Q ss_pred             h--cccccccCCcccccceecHHHHHhhhcCCcccc-cC-----CCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHH
Q psy6205         147 V--TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYF-NT-----YGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLH  217 (224)
Q Consensus       147 ~--~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~-~T-----~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~  217 (224)
                      +  +++|.+++|.++|.+++++++.+.+......+. ++     ....+.+++++.++|+.+.+ -....+..+..++|+
T Consensus       202 ~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~  281 (370)
T TIGR02539       202 IVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTRWFV  281 (370)
T ss_pred             EEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5  789999876789999999999998765422111 01     01112356666677765422 122333344467899


Q ss_pred             HhhhhcC
Q psy6205         218 TPKKENN  224 (224)
Q Consensus       218 ~~l~~l~  224 (224)
                      ++|+++|
T Consensus       282 ~~L~~~g  288 (370)
T TIGR02539       282 AELEDIG  288 (370)
T ss_pred             HHHHhCC
Confidence            9998764

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=97.43  E-value=0.002  Score=58.56  Aligned_cols=139  Identities=15%  Similarity=0.068  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCchh
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDIV  147 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi~  147 (224)
                      .+++++++..     .+- .||+-..... +...+-+++.+.+++.       ...++|-.|-..+ .++++.--..|++
T Consensus       209 ~d~l~~~~~~-----~~p-lvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~-~~~~~~~~~~D~v  280 (493)
T PRK13580        209 YDEIAALARE-----FKP-LILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVF-TGDEDPVPHADIV  280 (493)
T ss_pred             HHHHHHHHhh-----cCC-EEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceeccccc-hhhcCCCCCCcEE
Confidence            4566666642     222 3333333322 4355656666666665       2223333331111 1222200246765


Q ss_pred             --cccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhhh
Q psy6205         148 --TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       148 --~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~~l~~  222 (224)
                        |++|+|.|-. -|.+++++++.+.+... ..+.++..-.|..+|++.+ +..+.+   ..+.+++.++.++|++.|++
T Consensus       281 tgT~hKaL~GP~-GG~I~~~~~l~~~L~~a-~P~i~gg~l~p~iAA~avA-l~e~~~~ef~~y~~~l~~Na~~La~~L~~  357 (493)
T PRK13580        281 TTTTHKTLRGPR-GGLVLAKKEYADAVDKG-CPLVLGGPLPHVMAAKAVA-LAEARTPEFQKYAQQVVDNARALAEGFLK  357 (493)
T ss_pred             EeCChhhccCCC-eEEEEecHHHHHHHhhC-CCcccCCCccHHHHHHHHH-HHHHhCccHHHHHHHHHHHHHHHHHHHHh
Confidence              6899994311 23488899998888432 3444454555655555555 555532   34889999999999999987


Q ss_pred             cC
Q psy6205         223 NN  224 (224)
Q Consensus       223 l~  224 (224)
                      +|
T Consensus       358 ~G  359 (493)
T PRK13580        358 RG  359 (493)
T ss_pred             cC
Confidence            65

>PRK06108 aspartate aminotransferase; Provisional

Probab=97.43  E-value=0.0015  Score=57.21  Aligned_cols=129  Identities=16%  Similarity=0.110  Sum_probs=78.1

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccc-cccchhhhhcCCCCCCc---hhccccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRV-GTHWWAFQLQGDDIIPD---IVTVGKPMG  154 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~Grt-G~~~~~~~~~g~~v~pD---i~~~~K~l~  154 (224)
                      ++.++++.....-.|.+. +.+.++++.++            +..+|-.. +.....+..+- +..+.   +.+++|.+|
T Consensus       158 ~~~~i~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g  235 (382)
T PRK06108        158 RTRALFINSPNNPTGWTA-SRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIA-EPDDRIIFVNSFSKNWA  235 (382)
T ss_pred             cceEEEEECCCCCCCccc-CHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcC-CCcCCEEEEeechhhcc
Confidence            455666654455567654 56666666655            44444211 11011111110 01122   237999997


Q ss_pred             -CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         155 -NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 -~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                       .|+.+|++++++++.+.+...  ....+++.++++.+++.+.|+.-++  +++.+++++.-+++.+.|+++
T Consensus       236 ~~G~RiG~~~~~~~~~~~~~~~--~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  305 (382)
T PRK06108        236 MTGWRLGWLVAPPALGQVLEKL--IEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRAL  305 (382)
T ss_pred             CcccceeeeeCCHHHHHHHHHH--HHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             589999999999999887643  2234666788888888888865321  356777788888888887654

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=97.41  E-value=0.0013  Score=57.34  Aligned_cols=127  Identities=20%  Similarity=0.161  Sum_probs=75.4

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH----------HHhCCccccccchhhhhcCCCCCCchh---ccccccc-CC
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH----------VQVGFGRVGTHWWAFQLQGDDIIPDIV---TVGKPMG-NG  156 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----------v~tG~GrtG~~~~~~~~~g~~v~pDi~---~~~K~l~-~G  156 (224)
                      +..+|++.-.+...|.+.+..+..+.++..          +...+...+....+.....  ..++++   +++|.+| .|
T Consensus       154 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~g~~G  231 (367)
T PRK02731        154 RTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVA--KFPNVVVTRTFSKAYGLAG  231 (367)
T ss_pred             CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHh--hcCCEEEEeeehHhhcCcc
Confidence            455666665566688877776655555431          3333322221011222222  335555   7899997 68


Q ss_pred             cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +.+|.+++++++.+.+...    ..++..++++.+++.+.|+-.+ -++..++.+++-+++.+.|++.
T Consensus       232 ~RiG~l~~~~~~~~~l~~~----~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  295 (367)
T PRK02731        232 LRVGYGIAPPEIIDALNRV----RQPFNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL  295 (367)
T ss_pred             cceeeeeCCHHHHHHHHHc----cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999888643    2356678888888877775211 1234444555556666666553

>PRK07682 hypothetical protein; Validated

Probab=97.41  E-value=0.0016  Score=57.24  Aligned_cols=128  Identities=11%  Similarity=0.066  Sum_probs=76.8

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCc---hhccccccc-
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPD---IVTVGKPMG-  154 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pD---i~~~~K~l~-  154 (224)
                      ++.++++..-+.-.|. ..+++.++++.++            +...|...+. +..+.... +..+.   +-++||.++ 
T Consensus       154 ~~~~v~~~~p~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~-~~~~~~i~~~S~SK~~~~  230 (378)
T PRK07682        154 KTKAILLCSPNNPTGA-VLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIK-GMRERTILISGFSKGFAM  230 (378)
T ss_pred             ccEEEEEECCCCCcCc-CcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhcc-cccCCEEEEecCcccccC
Confidence            4566655433445666 4455666666555            5555533332 11111111 12222   447999998 


Q ss_pred             CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         155 NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 ~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .|+.+|.+++++++++.+...  ...++++.++++.+++.+.|+.-+  -+.+.++.++.-+++.+.|+++
T Consensus       231 ~GlR~G~~~~~~~~i~~l~~~--~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~  299 (378)
T PRK07682        231 TGWRLGFIAAPVYFSEAMLKI--HQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI  299 (378)
T ss_pred             hhhhhhhhhcCHHHHHHHHHH--HHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            689999999999999988643  222455667888888887775321  2345556677777777777654

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.38  E-value=0.00027  Score=64.03  Aligned_cols=82  Identities=22%  Similarity=0.208  Sum_probs=49.6

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccc---cchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATS---EAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~---~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      ++||.|+||||+|||+|+||+.++.++.++..   .+..+.......+.+..+..+..+...+...  +++..++.++.|
T Consensus       372 ~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~l~~~Ppl~i--t~~~id~~~~~l  449 (460)
T PRK06916        372 FALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLGNTIVFMPPLAS--TIDELDEMLRIL  449 (460)
T ss_pred             hcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEecCCEEEEeCCccc--CHHHHHHHHHHH
Confidence            35899999999999999999987766655432   1233443433344444443343332212111  256677778888


Q ss_pred             HHHHHHH
Q psy6205          79 QDLIEAM   85 (224)
Q Consensus        79 ~~~~~~~   85 (224)
                      ++.++.+
T Consensus       450 ~~~l~~~  456 (460)
T PRK06916        450 YKAISDV  456 (460)
T ss_pred             HHHHHhh
Confidence            8777654

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=97.36  E-value=0.003  Score=54.47  Aligned_cols=138  Identities=11%  Similarity=0.067  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      .+++++.+..   ++ ++..+++--.....|.+.+.++..+.+++.        +++ ||..   .+....++    .|+
T Consensus       113 ~~~l~~~l~~---~~-~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s-~g~~---~~~~~~~~----~d~  180 (355)
T TIGR03301       113 LNRIEEALAA---DP-DITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSS-FGAI---PIDIEELD----VDA  180 (355)
T ss_pred             HHHHHHHHHh---CC-CceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccc-cCCc---ccchhhcC----ccE
Confidence            4556665542   32 444443322334467777766666666666        322 4321   12223333    454


Q ss_pred             --hcccccccCCcccccceecHHHHHhhhcCCccc---------------ccCCCCcHHHHHHHHHHHHHHhhh----hH
Q psy6205         147 --VTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY---------------FNTYGGNPVSCAVANAVMEVLETE----NL  205 (224)
Q Consensus       147 --~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~---------------~~T~~~~p~~~aaa~a~l~~~~~~----~l  205 (224)
                        .+++|.++|+.-+|.+++++++++.+......+               ...|+.++.+..++.++|+.+.++    +.
T Consensus       181 ~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~  260 (355)
T TIGR03301       181 LIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPAR  260 (355)
T ss_pred             EEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHH
Confidence              578999875433688999999988765211010               124556778888888999988543    35


Q ss_pred             HHHHHHHHHHHHHhhhhcC
Q psy6205         206 REHALDVGNQLHTPKKENN  224 (224)
Q Consensus       206 ~~~~~~~g~~l~~~l~~l~  224 (224)
                      .++.+++.+++.+.|++++
T Consensus       261 ~~~~~~~~~~~~~~L~~~g  279 (355)
T TIGR03301       261 IARYRRNRELLVDGLRALG  279 (355)
T ss_pred             HHHHHHHHHHHHHHHHHcC
Confidence            6678888899999887653

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PLN02721 threonine aldolase

Probab=97.33  E-value=0.0031  Score=54.49  Aligned_cols=138  Identities=18%  Similarity=0.196  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHcc-CCCCceEEEEccccCCCCcccCCHHHHHHHHHH-HHhCCccc---ccc-chhhhhcCCCCCC----
Q psy6205          75 AQDVQDLIEAMGR-NGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-VQVGFGRV---GTH-WWAFQLQGDDIIP----  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~-~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-v~tG~Grt---G~~-~~~~~~~g~~v~p----  144 (224)
                      .+++++.++.... +..+..+|++++++.+.|-...+.+.++++.++ -..|. ..   +.. ++.....+  ..+    
T Consensus       120 ~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~-~livD~a~~~~~~~~~~--~~~~~~~  196 (353)
T PLN02721        120 LDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGL-KLHIDGARIFNASVALG--VPVHRLV  196 (353)
T ss_pred             HHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCC-EEEEEchhhhcchhhhC--CCHHHHh
Confidence            4556655542110 114678999999988755455676677777666 11111 00   000 00000111  222    


Q ss_pred             ---c--hhcccccccCCccccc-ceecHHHHHhhhcCCcccccCCCC----cHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy6205         145 ---D--IVTVGKPMGNGHPVAA-VITTKEIAKSFQETGVEYFNTYGG----NPVSCAVANAVMEVLETENLREHALDVGN  214 (224)
Q Consensus       145 ---D--i~~~~K~l~~G~p~~a-v~~~~~i~~~~~~~~~~~~~T~~~----~p~~~aaa~a~l~~~~~~~l~~~~~~~g~  214 (224)
                         |  +++++|++++  |+|+ +++++++.+.+...    ..++.+    .+..+++++..++...+  ..++..++.+
T Consensus       197 ~~~d~~~~s~sK~l~~--~~G~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~  268 (353)
T PLN02721        197 KAADSVSVCLSKGLGA--PVGSVIVGSKSFIRKAKRL----RKTLGGGMRQVGVLAAAALVALQENVP--KLEDDHKKAK  268 (353)
T ss_pred             hhCCEEEEecccccCC--ceeeEEecCHHHHHhHHHH----HHhcCCCeehhHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence               3  4578999874  5565 56788887765421    112221    12334445555544322  2334456667


Q ss_pred             HHHHhhhhc
Q psy6205         215 QLHTPKKEN  223 (224)
Q Consensus       215 ~l~~~l~~l  223 (224)
                      ++.+.|+++
T Consensus       269 ~l~~~L~~~  277 (353)
T PLN02721        269 LLAEGLNQI  277 (353)
T ss_pred             HHHHHHHhC
Confidence            787777654

>PRK06225 aspartate aminotransferase; Provisional

Probab=97.33  E-value=0.0021  Score=56.54  Aligned_cols=124  Identities=15%  Similarity=0.177  Sum_probs=72.0

Q ss_pred             CceEE-EEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhccccccc-CC
Q psy6205          91 RPCAF-FAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMG-NG  156 (224)
Q Consensus        91 ~iaav-i~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~-~G  156 (224)
                      ++.++ ++.| ....|.+. +++.++++.++            ++..|. .+. ....+ +..+...++.+++|.+| .|
T Consensus       157 ~~~~v~l~~p-~NptG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~-~~~-~~~~~-~~~~~~i~~~s~SK~~g~~G  231 (380)
T PRK06225        157 NTRLIYLIDP-LNPLGSSY-TEEEIKEFAEIARDNDAFLLHDCTYRDFA-REH-TLAAE-YAPEHTVTSYSFSKIFGMAG  231 (380)
T ss_pred             CceEEEEeCC-CCCCCcCC-CHHHHHHHHHHHHHCCcEEEEehhHHHHh-ccC-Cchhh-cCCCCEEEEeechhhcCCcc
Confidence            45454 4566 33456544 55566666665            444442 121 11111 11012234668999998 68


Q ss_pred             cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhh
Q psy6205         157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +.+|++++++++++.+...   ...+++.|.++++++.+.|+...+  +.+.+..++.-+.+.+.|++
T Consensus       232 ~RiG~i~~~~~l~~~~~~~---~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  296 (380)
T PRK06225        232 LRIGAVVATPDLIEVVKSI---VINDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDE  296 (380)
T ss_pred             ceeEEEecCHHHHHHHHHH---HhcccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999887642   235777889998888888865321  22233334444455555554

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=97.30  E-value=0.00031  Score=63.69  Aligned_cols=81  Identities=35%  Similarity=0.381  Sum_probs=47.0

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCC-CccccCCCCCCCCCChhHHHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPC-PDVYRGKYPADKYPDEDLGVKYAQDVQDL   81 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~-P~~yr~~~~~~~~~~~~~~~~~~~~l~~~   81 (224)
                      +||.|++|||+|||+|+||+.+..++.+....+..+...+...+.+..+. .+..+..++...  +++..++.++.+++.
T Consensus       371 ~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl~i--t~~eid~~~~~l~~~  448 (459)
T PRK06082        371 KYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLII--TREELTQALAILEEA  448 (459)
T ss_pred             hCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecCCCEEEEeCCCcc--CHHHHHHHHHHHHHH
Confidence            48999999999999999998766555443332333333333333333222 232222222111  266677778888877


Q ss_pred             HHHH
Q psy6205          82 IEAM   85 (224)
Q Consensus        82 ~~~~   85 (224)
                      +..+
T Consensus       449 l~~~  452 (459)
T PRK06082        449 IAKI  452 (459)
T ss_pred             HHHH
Confidence            7654

>PRK07483 hypothetical protein; Provisional

Probab=97.24  E-value=0.00046  Score=62.29  Aligned_cols=82  Identities=29%  Similarity=0.314  Sum_probs=47.5

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccc---cchhhhccCCCcceeecCC--------CccccCCCCCCCCCChhH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATS---EAQHVITRPPVRMSTEAPC--------PDVYRGKYPADKYPDEDL   70 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~---~a~~l~~~~~~~~~~~vp~--------P~~yr~~~~~~~~~~~~~   70 (224)
                      ++||.|+||||+|||+|+||+.+..++.|+..   .+..+....+..+.+..+.        ++..|-.++-.-  +++.
T Consensus       346 ~~~~~i~~vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~i--t~~e  423 (443)
T PRK07483        346 GQHPHVGDIRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFII--TAAQ  423 (443)
T ss_pred             hcCCCeeeEeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCC--CHHH
Confidence            45899999999999999999977655555322   1222333333334433322        123332111111  3667


Q ss_pred             HHHHHHHHHHHHHHH
Q psy6205          71 GVKYAQDVQDLIEAM   85 (224)
Q Consensus        71 ~~~~~~~l~~~~~~~   85 (224)
                      .++.++.|++.++.+
T Consensus       424 id~~~~~l~~~l~~~  438 (443)
T PRK07483        424 IDEIVERLGDAIDAA  438 (443)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777888888877654

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=97.24  E-value=0.0052  Score=55.98  Aligned_cols=137  Identities=13%  Similarity=-0.044  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEE-ccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFA-ESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~-Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      .++|++++..   .  +...||+ |.+.++.+++.   .+.+.+++.       ...++|-.+..... ..+   -..|+
T Consensus       172 ~d~Le~~l~~---~--~pklIv~~~S~~s~~~D~a---~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~-~p~---~~~Di  239 (475)
T PLN03226        172 YDKLEKKAML---F--RPKLIIAGASAYPRDWDYA---RMRKIADKVGALLMCDMAHISGLVAAQEAA-SPF---EYCDV  239 (475)
T ss_pred             HHHHHHHHhh---c--CCeEEEEecCcCCCccCHH---HHHHHHHHcCCEEEEEchhhhCcccCCCCC-CCC---CCCeE
Confidence            4667666653   2  2223444 77776655443   444445554       22233333321111 112   13677


Q ss_pred             h--cccccccCCcccccceecHHHH-----------Hh--hhcCCcccccCCCCcHHHHHHHHHHHHHHhhh---hHHHH
Q psy6205         147 V--TVGKPMGNGHPVAAVITTKEIA-----------KS--FQETGVEYFNTYGGNPVSCAVANAVMEVLETE---NLREH  208 (224)
Q Consensus       147 ~--~~~K~l~~G~p~~av~~~~~i~-----------~~--~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~---~l~~~  208 (224)
                      +  |+.|+|.|-.- |.+++++++.           +.  ..+.......+-+-||..+++..++|+++.++   .+.++
T Consensus       240 v~~t~hK~L~GP~G-g~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~  318 (475)
T PLN03226        240 VTTTTHKSLRGPRG-GMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQ  318 (475)
T ss_pred             EEecCcccccCCCc-eEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            6  57799953110 2366676543           22  22222222233345677888888889999643   46899


Q ss_pred             HHHHHHHHHHhhhhcC
Q psy6205         209 ALDVGNQLHTPKKENN  224 (224)
Q Consensus       209 ~~~~g~~l~~~l~~l~  224 (224)
                      +.++.++|.+.|+++|
T Consensus       319 ~~~na~~L~~~L~~~G  334 (475)
T PLN03226        319 VKANAAALANRLMSKG  334 (475)
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            9999999999998764

>PRK06105 aminotransferase; Provisional

Probab=97.23  E-value=0.00045  Score=62.63  Aligned_cols=82  Identities=22%  Similarity=0.235  Sum_probs=47.6

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccc---cchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATS---EAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~---~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      ++||.|++|||+|+|+||||+.+..+++++..   .+..+.......+.+..+..+..|...+.+-  +++..++.++.|
T Consensus       366 ~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~g~~i~l~Ppl~i--t~~eid~~~~~l  443 (460)
T PRK06105        366 ADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAMGDTLAFCPPLII--TAAQVDEMVDRF  443 (460)
T ss_pred             hcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEecCCEEEEECCCcc--CHHHHHHHHHHH
Confidence            45899999999999999999876655555322   1233333333334444333333332111111  256667777777


Q ss_pred             HHHHHHH
Q psy6205          79 QDLIEAM   85 (224)
Q Consensus        79 ~~~~~~~   85 (224)
                      ++.++.+
T Consensus       444 ~~~l~~~  450 (460)
T PRK06105        444 GRALDDV  450 (460)
T ss_pred             HHHHHHH
Confidence            7777654

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.20  E-value=0.00051  Score=62.41  Aligned_cols=82  Identities=21%  Similarity=0.158  Sum_probs=49.8

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccc---cchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATS---EAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~---~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      ++||.|+||||+|||+|+|++.++.++.|...   .+..+..+....+.+..+..+..|...+...  +++..++.++.+
T Consensus       363 ~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~i~~~Ppl~i--t~~eid~~~~~l  440 (466)
T PRK07030        363 ADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPLGSVVYFLPPYVI--TPEQIDFLAEVA  440 (466)
T ss_pred             hcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEecCCEEEEECCccC--CHHHHHHHHHHH
Confidence            45899999999999999999977665554321   1223333333344444333333332222111  367777888888


Q ss_pred             HHHHHHH
Q psy6205          79 QDLIEAM   85 (224)
Q Consensus        79 ~~~~~~~   85 (224)
                      ++.++.+
T Consensus       441 ~~al~~~  447 (466)
T PRK07030        441 SEGIDIA  447 (466)
T ss_pred             HHHHHHH
Confidence            8888765

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=97.18  E-value=0.0027  Score=54.55  Aligned_cols=80  Identities=18%  Similarity=0.088  Sum_probs=53.8

Q ss_pred             CCchh--cccccccCCccccc-ceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy6205         143 IPDIV--TVGKPMGNGHPVAA-VITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTP  219 (224)
Q Consensus       143 ~pDi~--~~~K~l~~G~p~~a-v~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~  219 (224)
                      .+|++  +++|.++.  |.++ +++++++.+.+......+.+++..++++++++++.|+.-......+++.++.+++.+.
T Consensus       186 ~~d~~~~s~sK~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~  263 (338)
T cd06502         186 GVDSVSFCLSKGGGA--PVGAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEA  263 (338)
T ss_pred             cCCEEEEeccccCCC--ccceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence            46665  67888862  3344 4578888888764322334566778888888888886422234567888888999999


Q ss_pred             hhhcC
Q psy6205         220 KKENN  224 (224)
Q Consensus       220 l~~l~  224 (224)
                      |++++
T Consensus       264 L~~~~  268 (338)
T cd06502         264 LEELG  268 (338)
T ss_pred             HHhcC
Confidence            98753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=97.16  E-value=0.0066  Score=52.66  Aligned_cols=126  Identities=12%  Similarity=0.082  Sum_probs=80.3

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhcc--cccccCCcccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTV--GKPMGNGHPVA  160 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~--~K~l~~G~p~~  160 (224)
                      ++.+|++-......|.+.+.++..+.+++.        ++ ++|..-   +....++    +|+++.  .|.++++..+|
T Consensus       124 ~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~-~~g~~~---~~~~~~~----~d~~~~s~~K~l~~p~g~G  195 (356)
T cd06451         124 DIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVS-SLGGEP---FRMDEWG----VDVAYTGSQKALGAPPGLG  195 (356)
T ss_pred             CCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeeh-hccCcc---ccccccC----ccEEEecCchhccCCCCcc
Confidence            566777766666688887766655555555        32 233211   1222223    576654  69998766678


Q ss_pred             cceecHHHHHhhhc--CCcc---------------cccCCCCcHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHhh
Q psy6205         161 AVITTKEIAKSFQE--TGVE---------------YFNTYGGNPVSCAVANAVMEVLETE---NLREHALDVGNQLHTPK  220 (224)
Q Consensus       161 av~~~~~i~~~~~~--~~~~---------------~~~T~~~~p~~~aaa~a~l~~~~~~---~l~~~~~~~g~~l~~~l  220 (224)
                      +++.+++.++.+..  ....               ++.+.+.++.+.+++.++++.+.+.   .+.++.+++.+++.+.|
T Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L  275 (356)
T cd06451         196 PIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGL  275 (356)
T ss_pred             eeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            89999998877652  1000               0122344566778888999888643   56788889999999999


Q ss_pred             hhcC
Q psy6205         221 KENN  224 (224)
Q Consensus       221 ~~l~  224 (224)
                      +++|
T Consensus       276 ~~~g  279 (356)
T cd06451         276 EALG  279 (356)
T ss_pred             HHcC
Confidence            8653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK03321 putative aminotransferase; Provisional

Probab=97.16  E-value=0.0029  Score=54.96  Aligned_cols=103  Identities=20%  Similarity=0.230  Sum_probs=65.4

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH----------HHhCCccccccchhhhhcCCCCCCchh---ccccccc-CC
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH----------VQVGFGRVGTHWWAFQLQGDDIIPDIV---TVGKPMG-NG  156 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----------v~tG~GrtG~~~~~~~~~g~~v~pDi~---~~~K~l~-~G  156 (224)
                      +..+|++...+.-.|.+.+..++.+.+++.          +...|-..+...-..+...  -.++++   ++||.+| .|
T Consensus       145 ~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~vi~~~S~SK~~g~~G  222 (352)
T PRK03321        145 RTRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVR--DHPNVVVLRTFSKAYGLAG  222 (352)
T ss_pred             CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHh--hCCCEEEEecchHHhhhHH
Confidence            445566655556678888776666665542          3333322221001112221  235655   6899998 68


Q ss_pred             cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH
Q psy6205         157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV  199 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~  199 (224)
                      +-+|.+++++++++.+...    ..++..++++.+++.+.|+.
T Consensus       223 lRiG~~v~~~~~~~~~~~~----~~~~~~s~~~q~~a~~~l~~  261 (352)
T PRK03321        223 LRVGYAVGHPEVIAALRKV----AVPFSVNSLAQAAAIASLAA  261 (352)
T ss_pred             HhhhhhcCCHHHHHHHHHh----cCCCCCCHHHHHHHHHHhcC
Confidence            9999999999999988643    34677889998888888863

>PRK07480 putative aminotransferase; Validated

Probab=97.15  E-value=0.0006  Score=61.77  Aligned_cols=82  Identities=18%  Similarity=0.152  Sum_probs=46.2

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccc---cchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATS---EAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~---~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      ++||.|++|||+|+|+|+||+++..++.++..   ....+....+..+.+..+..+..+-.++.+-  +++..++.++.|
T Consensus       365 ~~~~~i~~vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~l~~~Ppl~i--t~~eid~~~~~l  442 (456)
T PRK07480        365 ADHPLVGEVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAVGDRMIISPPLVI--THAEIDELVEKA  442 (456)
T ss_pred             hcCCCeeeEEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeecCCEEEEECCCCC--CHHHHHHHHHHH
Confidence            46899999999999999999877655554321   1122222222233333222232221111111  266677778888


Q ss_pred             HHHHHHH
Q psy6205          79 QDLIEAM   85 (224)
Q Consensus        79 ~~~~~~~   85 (224)
                      ++.+..+
T Consensus       443 ~~al~~~  449 (456)
T PRK07480        443 RKALDAT  449 (456)
T ss_pred             HHHHHHH
Confidence            8777654

>PRK06917 hypothetical protein; Provisional

Probab=97.15  E-value=0.00078  Score=60.87  Aligned_cols=81  Identities=27%  Similarity=0.290  Sum_probs=47.2

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccc---cchhhhccCCCcceeecCC--------CccccCCCCCCCCCChhHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATS---EAQHVITRPPVRMSTEAPC--------PDVYRGKYPADKYPDEDLG   71 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~---~a~~l~~~~~~~~~~~vp~--------P~~yr~~~~~~~~~~~~~~   71 (224)
                      +||.|++|||.|+|+++||+.++.++.++..   ....+...+...+.+..+.        .+..+...+...  +++..
T Consensus       347 ~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~i--t~~ei  424 (447)
T PRK06917        347 QSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTI--TYSEL  424 (447)
T ss_pred             cCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcC--CHHHH
Confidence            5899999999999999999987665555432   2333333333334443332        122221111111  25667


Q ss_pred             HHHHHHHHHHHHHH
Q psy6205          72 VKYAQDVQDLIEAM   85 (224)
Q Consensus        72 ~~~~~~l~~~~~~~   85 (224)
                      ++.++.+++.++.+
T Consensus       425 d~~~~~l~~~l~~~  438 (447)
T PRK06917        425 DELLSIFAKSVEEM  438 (447)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77788888777654

>TIGR01814 kynureninase kynureninase

Probab=97.15  E-value=0.0067  Score=53.91  Aligned_cols=138  Identities=21%  Similarity=0.231  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      ++++++.++.   ..+++.+|+++.+....|.+.|-++..+.+++.        +|+ +|..-   +..+.+|  +...+
T Consensus       158 ~~~l~~~~~~---~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~-~G~~~---id~~~~g--vD~~~  228 (406)
T TIGR01814       158 LEDILDTIEK---NGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHA-VGNVP---LDLHDWG--VDFAC  228 (406)
T ss_pred             HHHHHHHHHh---cCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccc-cCCcc---cccccCC--CCEEE
Confidence            4556665543   235788999999999999999988888888887        444 44332   2233444  43444


Q ss_pred             hcccccccCCcccccceecHHHHHhhhcC--C-cc------c--ccC----------CCCcHHHHHHHHHHHHHHhh---
Q psy6205         147 VTVGKPMGNGHPVAAVITTKEIAKSFQET--G-VE------Y--FNT----------YGGNPVSCAVANAVMEVLET---  202 (224)
Q Consensus       147 ~~~~K~l~~G~p~~av~~~~~i~~~~~~~--~-~~------~--~~T----------~~~~p~~~aaa~a~l~~~~~---  202 (224)
                      .+.-|.|.||.. +++..+++..+.+.+.  + ..      +  ..+          .+-|..++++..++|+++++   
T Consensus       229 ~s~hK~l~g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~  307 (406)
T TIGR01814       229 WCTYKYLNAGPG-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGM  307 (406)
T ss_pred             EcCccccCCCCC-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCH
Confidence            467899876632 4344444433223211  0 00      0  011          12345788888889999955   


Q ss_pred             hhHHHHHHHHHHHHHHhhhh
Q psy6205         203 ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       203 ~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +...++.+++.+++++.|++
T Consensus       308 ~~i~~~~~~l~~~l~~~l~~  327 (406)
T TIGR01814       308 EALRKKSLLLTDYLEELIKA  327 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            56778889999999988865

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK06149 hypothetical protein; Provisional

Probab=97.12  E-value=0.00056  Score=67.47  Aligned_cols=79  Identities=30%  Similarity=0.437  Sum_probs=49.7

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCCC---ccccCCCCCCCCCChhHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCP---DVYRGKYPADKYPDEDLGVKYAQDVQ   79 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P---~~yr~~~~~~~~~~~~~~~~~~~~l~   79 (224)
                      +||.|++|||+|||+|+||+.+..++.|....+..+..+++..+.+..+..   +..+...+...  +++..+..++.|+
T Consensus       888 ~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~i--t~~~id~~~~~l~  965 (972)
T PRK06149        888 RHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCL--DRESADFFVDMLD  965 (972)
T ss_pred             hCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcC--CHHHHHHHHHHHH
Confidence            589999999999999999998777766655444445544444455444432   23332112111  2566677777777


Q ss_pred             HHHH
Q psy6205          80 DLIE   83 (224)
Q Consensus        80 ~~~~   83 (224)
                      +.+.
T Consensus       966 ~~l~  969 (972)
T PRK06149        966 RVLT  969 (972)
T ss_pred             HHHH
Confidence            7765

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=97.11  E-value=0.0087  Score=54.34  Aligned_cols=145  Identities=17%  Similarity=0.166  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCcccc-ccchhhh----hcCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVG-THWWAFQ----LQGDD  141 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG-~~~~~~~----~~g~~  141 (224)
                      +++|++.+..  ..++++.+|+++.-....|-.+.+.+.+++++++        |.=+- |.. ..+|..+    +.+..
T Consensus       163 ~e~Le~~i~~--~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa-~~~e~a~f~~~~e~g~~~~s  239 (460)
T PRK13238        163 LEKLEALIEE--VGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAA-RFAENAYFIKQREPGYKDKS  239 (460)
T ss_pred             HHHHHHHHhh--cCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECc-chhhhhhhhhhccccccCCC
Confidence            5677777653  2335788999986555544456668888888887        11110 100 0011111    01100


Q ss_pred             C---------CCchhcccccccCC-ccccccee-c-HHHHHhhhcCCc-cc-ccCCCCcHHHHHHHHHH-HH-HHhhhhH
Q psy6205         142 I---------IPDIVTVGKPMGNG-HPVAAVIT-T-KEIAKSFQETGV-EY-FNTYGGNPVSCAVANAV-ME-VLETENL  205 (224)
Q Consensus       142 v---------~pDi~~~~K~l~~G-~p~~av~~-~-~~i~~~~~~~~~-~~-~~T~~~~p~~~aaa~a~-l~-~~~~~~l  205 (224)
                      +         -.|+++|+ +--.| .|.|++++ + +++++.+..... .+ ..||+|++..+.+|+++ |+ .++++.+
T Consensus       240 i~~i~~~~~s~~D~~~~S-g~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~  318 (460)
T PRK13238        240 IKEIAREMFSYADGLTMS-AKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYL  318 (460)
T ss_pred             HHHHhhhhcccCcEEEEe-cccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHH
Confidence            0         15665554 11123 35555565 4 577777654311 12 35999998887777764 44 4444444


Q ss_pred             HHHHHHHHHHHHHhhhhcC
Q psy6205         206 REHALDVGNQLHTPKKENN  224 (224)
Q Consensus       206 ~~~~~~~g~~l~~~l~~l~  224 (224)
                      ..+++ .-++|.+.|++.|
T Consensus       319 ~~~~~-~~~~l~~~L~~~G  336 (460)
T PRK13238        319 AYRIG-QVEYLGEGLEEAG  336 (460)
T ss_pred             HHHHH-HHHHHHHHHHHCC
Confidence            44444 4488888887654

>PRK07482 hypothetical protein; Provisional

Probab=97.10  E-value=0.00079  Score=61.07  Aligned_cols=81  Identities=22%  Similarity=0.305  Sum_probs=46.1

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccc---cchhhhccCCCcceeecCC--CccccCCCCCCCCCChhHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATS---EAQHVITRPPVRMSTEAPC--PDVYRGKYPADKYPDEDLGVKYAQ   76 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~---~a~~l~~~~~~~~~~~vp~--P~~yr~~~~~~~~~~~~~~~~~~~   76 (224)
                      ++||.|++|||.|+|+|+||+++..++.|+..   .+..+.......+.+..+.  .+..+...+...  +++..++.++
T Consensus       369 ~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~~~~~i~~~Ppl~i--t~~ei~~~~~  446 (461)
T PRK07482        369 GDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVL--TRAEADEIVA  446 (461)
T ss_pred             hcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCCCCCEEEEeCCCCC--CHHHHHHHHH
Confidence            46899999999999999999977665555332   1233333333333332222  232222111111  2566677777


Q ss_pred             HHHHHHHH
Q psy6205          77 DVQDLIEA   84 (224)
Q Consensus        77 ~l~~~~~~   84 (224)
                      .+++.++.
T Consensus       447 ~l~~~l~~  454 (461)
T PRK07482        447 IAKDAVDE  454 (461)
T ss_pred             HHHHHHHH
Confidence            77777754

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=97.10  E-value=0.012  Score=51.24  Aligned_cols=138  Identities=11%  Similarity=0.067  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      ++++++.+..   ++ ++..+.+--+....|.+.+.++..+.+++.        ++ ++|...   +....+    .+|+
T Consensus       117 ~~~l~~~l~~---~~-~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~-~~g~~~---~~~~~~----~~D~  184 (363)
T TIGR02326       117 VVEVEAILAA---DP-AITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMS-SFGGIP---IDIAEL----HIDY  184 (363)
T ss_pred             HHHHHHHHhh---CC-CccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccc-cccCcc---cchhhc----CccE
Confidence            4556665542   22 333343333445578888877777777776        33 244322   122223    3676


Q ss_pred             h--cccccccCCcccccceecHHHHHhhhcCCccc----------------ccCCCCcHHHHHHHHHHHHHHhhh----h
Q psy6205         147 V--TVGKPMGNGHPVAAVITTKEIAKSFQETGVEY----------------FNTYGGNPVSCAVANAVMEVLETE----N  204 (224)
Q Consensus       147 ~--~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~----------------~~T~~~~p~~~aaa~a~l~~~~~~----~  204 (224)
                      +  +..|.|.|..-+|.++++++..+.+......+                ...|+.++....+..++|+.+.++    +
T Consensus       185 ~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~  264 (363)
T TIGR02326       185 LISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAA  264 (363)
T ss_pred             EEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHH
Confidence            6  57899976544688999998877653211000                123456777888888888887543    4


Q ss_pred             HHHHHHHHHHHHHHhhhhcC
Q psy6205         205 LREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       205 l~~~~~~~g~~l~~~l~~l~  224 (224)
                      ..++.+++.++|++.|+++|
T Consensus       265 ~~~~~~~~~~~l~~~L~~~g  284 (363)
T TIGR02326       265 RHQRYQQNQKTLVAGMRALG  284 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHcC
Confidence            66788899999999987653

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=97.07  E-value=0.004  Score=53.84  Aligned_cols=125  Identities=17%  Similarity=0.183  Sum_probs=79.7

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH----------HHhCCccccccchhhhhcCCCCCCchh---ccccccc-C
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH----------VQVGFGRVGTHWWAFQLQGDDIIPDIV---TVGKPMG-N  155 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----------v~tG~GrtG~~~~~~~~~g~~v~pDi~---~~~K~l~-~  155 (224)
                      +++.+|++.......|.+.+.+++.+.++..          ++..|...+. ...  ...  ..++++   +++|.+| .
T Consensus       141 ~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~-~~~--~~~--~~~~~i~~~S~sK~~g~~  215 (346)
T TIGR01141       141 DKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPS-TLP--LLA--EYPNLIVLRTLSKAFGLA  215 (346)
T ss_pred             CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCcc-HHH--HHh--hCCCEEEEehhhHhhhch
Confidence            3567777765566688887766655555432          5554432221 111  111  224544   6899996 4


Q ss_pred             CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         156 GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       156 G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+.+|++++++++.+.+...    ..+++.++++.+++.+.++... -....++++++-+++++.|+++
T Consensus       216 G~r~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  280 (346)
T TIGR01141       216 GLRIGYAIANAEIIDALNKV----RAPFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKL  280 (346)
T ss_pred             hhhceeeecCHHHHHHHHhc----cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            78899999999999887643    2356678888888888776543 2345666777777777777654

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK07036 hypothetical protein; Provisional

Probab=97.07  E-value=0.0009  Score=60.80  Aligned_cols=81  Identities=22%  Similarity=0.142  Sum_probs=44.9

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccc---cchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATS---EAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~---~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      ++||.|++|||.|+|+|+||+.++.++.++..   .+..+...+...+.+..+..+..+..++...  +++..++.++.+
T Consensus       369 ~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~l~Ppl~i--t~~~id~~~~~l  446 (466)
T PRK07036        369 RELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLEHLCVLSPPLII--TRAQIDEIVAIL  446 (466)
T ss_pred             ccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeecCCEEEEeCCCcC--CHHHHHHHHHHH
Confidence            46899999999999999999987665544321   2233333333334433332232221111111  255566666666


Q ss_pred             HHHHHH
Q psy6205          79 QDLIEA   84 (224)
Q Consensus        79 ~~~~~~   84 (224)
                      ++.++.
T Consensus       447 ~~al~~  452 (466)
T PRK07036        447 RAAIEE  452 (466)
T ss_pred             HHHHHH
Confidence            666654

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=97.07  E-value=0.0086  Score=52.25  Aligned_cols=125  Identities=14%  Similarity=0.100  Sum_probs=78.7

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPVAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~~a  161 (224)
                      ++.+|++.-+....|.+.+.+++.+.+++.       ...++|...   +...  .  ..+|+++++  |.+++ ..+|.
T Consensus       139 ~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~---~~~~--~--~~~d~~~~s~~K~~~~-~g~g~  210 (373)
T cd06453         139 RTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMP---VDVQ--D--LGCDFLAFSGHKMLGP-TGIGV  210 (373)
T ss_pred             CceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCcee---eecc--c--cCCCEEEeccccccCC-CCcEE
Confidence            567788776666678888877777777766       111222211   1111  1  448999888  99986 45688


Q ss_pred             ceecHHHHHhhhcCCcc---------c----------ccCCCCcHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHh
Q psy6205         162 VITTKEIAKSFQETGVE---------Y----------FNTYGGNPVSCAVANAVMEVLETE---NLREHALDVGNQLHTP  219 (224)
Q Consensus       162 v~~~~~i~~~~~~~~~~---------~----------~~T~~~~p~~~aaa~a~l~~~~~~---~l~~~~~~~g~~l~~~  219 (224)
                      +++++++.+.+......         .          +.+.+.|..+..+..++++.++++   .+.++.+++.+++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~  290 (373)
T cd06453         211 LYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALER  290 (373)
T ss_pred             EEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            88999988776532100         0          001123444555666678877653   5677788888999888


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |+++
T Consensus       291 l~~~  294 (373)
T cd06453         291 LSEI  294 (373)
T ss_pred             HhcC
Confidence            8765

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=97.04  E-value=0.00098  Score=60.19  Aligned_cols=81  Identities=22%  Similarity=0.273  Sum_probs=47.9

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCC-CccccCCCCCCCCCChhHHHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPC-PDVYRGKYPADKYPDEDLGVKYAQDVQDL   81 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~-P~~yr~~~~~~~~~~~~~~~~~~~~l~~~   81 (224)
                      +||.|++|||.|+|+|+|++.+..+..+....+..+....+..+++..+. ++..|...+...  +++..+..++.+++.
T Consensus       349 ~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~lr~~p~l~~--t~~~id~~~~~l~~~  426 (445)
T PRK08593        349 KYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVAGNVLRFQPPLVI--TYEQLDTALNTIEQA  426 (445)
T ss_pred             cCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccCCCEEEEECCCcc--CHHHHHHHHHHHHHH
Confidence            58999999999999999998765544443333333443333334433221 233332222111  266777778888887


Q ss_pred             HHHH
Q psy6205          82 IEAM   85 (224)
Q Consensus        82 ~~~~   85 (224)
                      ++.+
T Consensus       427 l~~~  430 (445)
T PRK08593        427 FTAL  430 (445)
T ss_pred             HHHH
Confidence            7765

>PRK06062 hypothetical protein; Provisional

Probab=97.03  E-value=0.001  Score=60.12  Aligned_cols=81  Identities=22%  Similarity=0.229  Sum_probs=46.5

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccc------cchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATS------EAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQ   76 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~------~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~   76 (224)
                      +||.|++|||.|+|+|+|+++++.++.|...      .+..+.......+.+..+..+..|-..+...  +++..++.++
T Consensus       360 ~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~lrl~ppl~~--t~~eid~~~~  437 (451)
T PRK06062        360 RHPSVGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVNGNRIHVVPPCTV--TEDEVREGLA  437 (451)
T ss_pred             cCCcEEeEeccccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeecCCEEEEECCccC--CHHHHHHHHH
Confidence            4899999999999999999876554444322      1223333333334433333333222111111  2666777788


Q ss_pred             HHHHHHHHH
Q psy6205          77 DVQDLIEAM   85 (224)
Q Consensus        77 ~l~~~~~~~   85 (224)
                      .+++.++.+
T Consensus       438 ~l~~~l~~~  446 (451)
T PRK06062        438 ILDAALAVA  446 (451)
T ss_pred             HHHHHHHHh
Confidence            888777654

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=97.01  E-value=0.0052  Score=53.48  Aligned_cols=103  Identities=14%  Similarity=0.064  Sum_probs=63.1

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH----------HHhCCccccccchhhhhcCCCCCCchh--ccccccc-CCc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH----------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMG-NGH  157 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~-~G~  157 (224)
                      ++.++++...+.-.|.+.+.++..+.++..          +...|-..+.......... .....++  ++||.+| .|+
T Consensus       151 ~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~g~~Gl  229 (359)
T PRK03158        151 QTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLE-KYENLIVLRTFSKAYGLAAL  229 (359)
T ss_pred             CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHH-hcCCEEEEEechHhhcCcch
Confidence            455667665577789888877655555442          2222200000000001111 0111233  7999998 689


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHH
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVME  198 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~  198 (224)
                      .+|.+++++++.+.+...    ..++..|+++.+++.++|+
T Consensus       230 RiG~~v~~~~~~~~~~~~----~~~~~~~~~~q~~~~~~l~  266 (359)
T PRK03158        230 RVGYGIASEELIEKLNIA----RPPFNTTRIAQYAAIAALE  266 (359)
T ss_pred             hhehhcCCHHHHHHHHHh----cCCCCCCHHHHHHHHHHhc
Confidence            999999999999888643    2357789999999988885

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=96.99  E-value=0.011  Score=51.49  Aligned_cols=136  Identities=20%  Similarity=0.213  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHccCCCCceEEE-EccccCCCCcccCCHHHHHHHHHH--------HHhCC----ccccccchhhhhcCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFF-AESLQSCGGQIIPPANYLREVYKH--------VQVGF----GRVGTHWWAFQLQGDD  141 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi-~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~----GrtG~~~~~~~~~g~~  141 (224)
                      .++|++.+.      ++..+|+ +.+ ....|.+.|.++..+.+++.        .++++    .+.+. .+.....+  
T Consensus       141 ~~~l~~~i~------~~~~~vi~~~~-~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~-~~~~~~~~--  210 (371)
T PRK13520        141 VKAVEDLID------DNTIGIVGIAG-TTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPP-NFDFSLPG--  210 (371)
T ss_pred             HHHHHHHHh------hCCEEEEEEcC-CcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCC-CccccCCC--
Confidence            455555553      1233444 333 34578888877777777775        44433    12221 12221122  


Q ss_pred             CCCchhcc--cccccCCccccccee-cHHHHHhhhcCC-c-------ccccCCCCcHHHHHHHHHHHHHHhhh---hHHH
Q psy6205         142 IIPDIVTV--GKPMGNGHPVAAVIT-TKEIAKSFQETG-V-------EYFNTYGGNPVSCAVANAVMEVLETE---NLRE  207 (224)
Q Consensus       142 v~pDi~~~--~K~l~~G~p~~av~~-~~~i~~~~~~~~-~-------~~~~T~~~~p~~~aaa~a~l~~~~~~---~l~~  207 (224)
                        .|.+++  -|-+.+|.|+|+++. ++++.+.+.... .       .+.+|..  +..++++.++|+.+.++   ++.+
T Consensus       211 --vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~--~~~~~~~~~al~~l~~~g~~~~~~  286 (371)
T PRK13520        211 --VDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRS--GAGVAATYAVMKYLGREGYRKVVE  286 (371)
T ss_pred             --CceEEECCccccCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeecc--ChHHHHHHHHHhhhcHhHHHHHHH
Confidence              354443  354334578887886 555776653211 0       0112333  34588888899988654   4788


Q ss_pred             HHHHHHHHHHHhhhhcC
Q psy6205         208 HALDVGNQLHTPKKENN  224 (224)
Q Consensus       208 ~~~~~g~~l~~~l~~l~  224 (224)
                      +..++.++|.++|+++|
T Consensus       287 ~~~~~~~~l~~~L~~~g  303 (371)
T PRK13520        287 RCMENTRWLAEELKERG  303 (371)
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            89999999999998653

>PRK07777 aminotransferase; Validated

Probab=96.97  E-value=0.008  Score=52.94  Aligned_cols=129  Identities=14%  Similarity=0.154  Sum_probs=71.9

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCC-c--hhccccccc-
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIP-D--IVTVGKPMG-  154 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~p-D--i~~~~K~l~-  154 (224)
                      ++.+|++...+...|... +++.++.+.++            +...|.-.+........+. +... +  +.+++|.+| 
T Consensus       159 ~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g~  236 (387)
T PRK07777        159 RTRALIVNSPHNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLP-GMRERTVTISSAAKTFNV  236 (387)
T ss_pred             ccEEEEEcCCCCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCC-CCcCcEEEEeechhhccC
Confidence            456777776666677755 55566666555            3333311111001111111 0111 2  336999998 


Q ss_pred             CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         155 NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 ~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .|+.+|++++++++.+.+...  ....++..++....++...|+.-+  .+.+.+++++..+++.+.|+++
T Consensus       237 ~GlRiG~~~~~~~l~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  305 (387)
T PRK07777        237 TGWKIGWACGPAPLIAAVRAA--KQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEA  305 (387)
T ss_pred             cCceeEEEecCHHHHHHHHHH--HhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            689999999999998877643  222345444444444444443211  1345667778888888887754

>PRK06148 hypothetical protein; Provisional

Probab=96.93  E-value=0.00093  Score=66.13  Aligned_cols=80  Identities=35%  Similarity=0.452  Sum_probs=50.6

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCC---CccccCCCCCCCCCChhHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPC---PDVYRGKYPADKYPDEDLGVKYAQDVQ   79 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~---P~~yr~~~~~~~~~~~~~~~~~~~~l~   79 (224)
                      +||.|++|||.|||.|+||+.+..++.|....+..+...+...+++..+.   .+..|...+...  +++..++.++.|+
T Consensus       928 ~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~i--t~~~id~~l~~l~ 1005 (1013)
T PRK06148        928 RFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIF--SRADADHLLEVLD 1005 (1013)
T ss_pred             hCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccC--CHHHHHHHHHHHH
Confidence            58999999999999999999877776665544444555544445544332   132222222111  2566777778787


Q ss_pred             HHHHH
Q psy6205          80 DLIEA   84 (224)
Q Consensus        80 ~~~~~   84 (224)
                      +.+..
T Consensus      1006 ~~l~~ 1010 (1013)
T PRK06148       1006 DVLAA 1010 (1013)
T ss_pred             HHHHH
Confidence            77754

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=96.93  E-value=0.0054  Score=54.92  Aligned_cols=134  Identities=19%  Similarity=0.107  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEE-ccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFA-ESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~-Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      .+++++.++.   .  +..+|++ +++.|+.+   +-+++.+.+++.       -..++|-++. ......++   ..|+
T Consensus       157 ~~~le~~l~~---~--~~klVi~~~~~~g~~~---dl~~l~~la~~~g~~livD~Aha~G~~~~-g~~~~~~~---~~Di  224 (416)
T PRK13034        157 YDEVEELAKE---H--KPKLIIAGFSAYPREL---DFARFREIADEVGALLMVDMAHIAGLVAA-GEHPNPFP---HAHV  224 (416)
T ss_pred             HHHHHHHHhh---c--CCeEEEECCCcccccc---CHHHHHHHHHHcCCEEEEeCcccccCccc-CCCCCCCC---CceE
Confidence            4556665542   1  3457777 57766443   444455555554       2233444442 11111111   2676


Q ss_pred             h--cccccccCCcccccceecHH-HHHhhhcCCcccccCC---CCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHH
Q psy6205         147 V--TVGKPMGNGHPVAAVITTKE-IAKSFQETGVEYFNTY---GGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHT  218 (224)
Q Consensus       147 ~--~~~K~l~~G~p~~av~~~~~-i~~~~~~~~~~~~~T~---~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~  218 (224)
                      +  +++|.|+|+. -|+++++++ +.+.+...   .++++   .-.|..++++++.+++++.  +++.++++++.++|++
T Consensus       225 ~~~s~~K~l~g~~-GG~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~  300 (416)
T PRK13034        225 VTTTTHKTLRGPR-GGMILTNDEEIAKKINSA---VFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAE  300 (416)
T ss_pred             EEEeCcccCCCCC-CeEEEECcHHHHHHHHhh---cCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence            6  5679995432 133566554 44433321   12221   2233445555566666633  4568999999999999


Q ss_pred             hhhhcC
Q psy6205         219 PKKENN  224 (224)
Q Consensus       219 ~l~~l~  224 (224)
                      +|+++|
T Consensus       301 ~L~~~G  306 (416)
T PRK13034        301 VLKERG  306 (416)
T ss_pred             HHHHcC
Confidence            998764

>PRK07481 hypothetical protein; Provisional

Probab=96.92  E-value=0.0013  Score=59.48  Aligned_cols=80  Identities=21%  Similarity=0.256  Sum_probs=45.3

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCcc---ccchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPAT---SEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQ   79 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~---~~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~   79 (224)
                      +||.|++|||+|+|+|+||+.+..++.+..   .....+...+...+.+..+..+..+-..+...  +++..++.++.++
T Consensus       363 ~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~i~l~Ppl~i--t~~eid~~~~~l~  440 (449)
T PRK07481        363 RFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSGTKIILSPPLVI--QREDVDRIVDALD  440 (449)
T ss_pred             cCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEecCCEEEEECCCCC--CHHHHHHHHHHHH
Confidence            489999999999999999987655554432   12233333333334444333222221111111  2566677777777


Q ss_pred             HHHHH
Q psy6205          80 DLIEA   84 (224)
Q Consensus        80 ~~~~~   84 (224)
                      +.++.
T Consensus       441 ~~l~~  445 (449)
T PRK07481        441 AGLSA  445 (449)
T ss_pred             HHHHh
Confidence            77654

>PRK07678 aminotransferase; Validated

Probab=96.90  E-value=0.0012  Score=59.79  Aligned_cols=81  Identities=25%  Similarity=0.327  Sum_probs=46.0

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCcc-ccchhhhccCCCcceeecCCC-------ccccCCCCCCCCCChhHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPAT-SEAQHVITRPPVRMSTEAPCP-------DVYRGKYPADKYPDEDLGVK   73 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~-~~a~~l~~~~~~~~~~~vp~P-------~~yr~~~~~~~~~~~~~~~~   73 (224)
                      ++||.|++|||.|+|+++|++.+..+..|.. ..+..+.......+.+..+.+       +..|...+...  +++..++
T Consensus       361 ~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~i--t~~eid~  438 (451)
T PRK07678        361 GEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVI--SSEEIAF  438 (451)
T ss_pred             hcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcC--CHHHHHH
Confidence            4689999999999999999997665544432 223333333333344332211       22222111111  2566777


Q ss_pred             HHHHHHHHHHH
Q psy6205          74 YAQDVQDLIEA   84 (224)
Q Consensus        74 ~~~~l~~~~~~   84 (224)
                      .++.+++.++.
T Consensus       439 ~~~~l~~~l~~  449 (451)
T PRK07678        439 IVGTLKTALER  449 (451)
T ss_pred             HHHHHHHHHHh
Confidence            77777777654

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=96.90  E-value=0.0095  Score=51.69  Aligned_cols=142  Identities=17%  Similarity=0.196  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHH---HHHH--------HHhCCcccccc-chh-hhhcCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLRE---VYKH--------VQVGFGRVGTH-WWA-FQLQGDD  141 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~---~~~~--------v~tG~GrtG~~-~~~-~~~~g~~  141 (224)
                      .++|++.+++......+..++++.......|...+.++..+.   +++.        +...+ ..+.. ++. .....  
T Consensus       132 ~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~--  208 (363)
T PF00155_consen  132 PEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDL-IFGDPDFGPIRSLLD--  208 (363)
T ss_dssp             HHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTG-BSSSSHTHHHHGHHT--
T ss_pred             ccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceecc-ccCCCccCccccccc--
Confidence            456666665421111135677777666667875555444333   3332        43333 22211 111 12222  


Q ss_pred             CCCc-hh--ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-----hhhHHHHHHHH
Q psy6205         142 IIPD-IV--TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-----TENLREHALDV  212 (224)
Q Consensus       142 v~pD-i~--~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-----~~~l~~~~~~~  212 (224)
                      -.++ |+  +++|.+| .|+.+|++++++++.+.+...    ..++..+....+++.+.+.--.     -+...+++++.
T Consensus       209 ~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~  284 (363)
T PF00155_consen  209 EDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRRF----QRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLREN  284 (363)
T ss_dssp             TTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHHH----HHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceeeeeccccccccccccccccchhhhhhhhhhc----cccccccchhhHHHHHhhhcccccccccccchhhHHHH
Confidence            3344 33  5899998 589999999999999988643    2233336666666655555443     14566777788


Q ss_pred             HHHHHHhhhhc
Q psy6205         213 GNQLHTPKKEN  223 (224)
Q Consensus       213 g~~l~~~l~~l  223 (224)
                      -+++.+.|++.
T Consensus       285 ~~~l~~~L~~~  295 (363)
T PF00155_consen  285 RDLLREALEEI  295 (363)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            88888888654

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=96.87  E-value=0.0014  Score=59.09  Aligned_cols=80  Identities=23%  Similarity=0.239  Sum_probs=43.5

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCC------ccccchhhhccCCCcceeecCC---CccccCCCCCCCCCChhHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTP------ATSEAQHVITRPPVRMSTEAPC---PDVYRGKYPADKYPDEDLGVK   73 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p------~~~~a~~l~~~~~~~~~~~vp~---P~~yr~~~~~~~~~~~~~~~~   73 (224)
                      +||.|++|||+|||+|+||++++.++.+      ....+..+....+..+.+..+.   .++.|-..+...  +++..++
T Consensus       347 ~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~i--t~~ei~~  424 (442)
T TIGR00709       347 EHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITI--DQEECEE  424 (442)
T ss_pred             hCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCC--CHHHHHH
Confidence            5899999999999999999876544321      1112233333333333333222   222221111111  2566677


Q ss_pred             HHHHHHHHHHH
Q psy6205          74 YAQDVQDLIEA   84 (224)
Q Consensus        74 ~~~~l~~~~~~   84 (224)
                      .++.+++.+..
T Consensus       425 ~~~~l~~~l~~  435 (442)
T TIGR00709       425 GISRFKQAVEE  435 (442)
T ss_pred             HHHHHHHHHHH
Confidence            77777776654

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=96.85  E-value=0.0017  Score=58.58  Aligned_cols=81  Identities=32%  Similarity=0.364  Sum_probs=48.3

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecC-CCccccCCCCCCCCCChhHHHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAP-CPDVYRGKYPADKYPDEDLGVKYAQDVQDL   81 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp-~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~   81 (224)
                      +||.|++|||+|+|.|+||+.+..++.+....+..+..+....+.+..+ ..+..|...+...  +++..++.++.+++.
T Consensus       346 ~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~lr~~P~l~~--t~~~id~~~~~l~~~  423 (443)
T PRK08360        346 KHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPPLTI--EKEVLDEGLDILEEA  423 (443)
T ss_pred             hCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCC--CHHHHHHHHHHHHHH
Confidence            4888999999999999999876655544333333343333333433322 1244343222221  366677778888887


Q ss_pred             HHHH
Q psy6205          82 IEAM   85 (224)
Q Consensus        82 ~~~~   85 (224)
                      ++.+
T Consensus       424 l~~~  427 (443)
T PRK08360        424 IEDV  427 (443)
T ss_pred             HHHH
Confidence            7765

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=96.84  E-value=0.0016  Score=59.73  Aligned_cols=82  Identities=18%  Similarity=0.166  Sum_probs=44.8

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccc---cchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATS---EAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~---~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      ++||.|++|||.|+|+|+|++.+..+..++..   .+..+.......+.+..+..+..|-..+.+.  +++..++.++.+
T Consensus       408 ~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~lrl~Ppl~i--t~eeid~~~~~l  485 (504)
T PLN02760        408 SGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAGDNIMMSPPLII--TPEEVDELISIY  485 (504)
T ss_pred             hcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecCCEEEEECCCCC--CHHHHHHHHHHH
Confidence            35899999999999999999876655544321   1222333333334433332232221111111  256666666666


Q ss_pred             HHHHHHH
Q psy6205          79 QDLIEAM   85 (224)
Q Consensus        79 ~~~~~~~   85 (224)
                      ++.++.+
T Consensus       486 ~~al~~~  492 (504)
T PLN02760        486 GKALKAT  492 (504)
T ss_pred             HHHHHHH
Confidence            6666543

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=96.82  E-value=0.014  Score=50.30  Aligned_cols=72  Identities=14%  Similarity=0.140  Sum_probs=51.3

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++|.+| .|+.+|++++++++++.+...    ..++..++++.+++.+.|+.-+ ..+..++++++-+++.+.|+++
T Consensus       191 S~SK~~g~~G~R~G~i~~~~~~~~~l~~~----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  264 (330)
T TIGR01140       191 SLTKFFGLAGLRLGFVVAHPALLARLREA----LGPWTVNGPARAAGRAALADTAWQAATRARLAAERARLAALLARL  264 (330)
T ss_pred             ecchhhcCchhhhhheeCCHHHHHHHHhc----CCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            7999999 789999999999999988643    2356667777777766665211 1234566777777777777654

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=96.81  E-value=0.0016  Score=59.03  Aligned_cols=79  Identities=14%  Similarity=0.070  Sum_probs=44.2

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDL   81 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~   81 (224)
                      ++||.|+||||+|+|+|+||+.+..+.   ...+..+.......+.+..+..+..|...+...  +++..++.++.|++.
T Consensus       369 ~~~~~v~~vrG~Gl~~gvel~~~~~~~---~~~~~~i~~~~~~~Gll~~~~g~~l~~~Ppl~i--t~~eid~~~~~l~~a  443 (453)
T PRK06943        369 AAHPQVRHLRQRGTIFAFDVALDGDAA---RTFSRRFFEAALERELLLRPIGTTVYLMPPYVL--DDDEIAWLAERTRAT  443 (453)
T ss_pred             hcCCCEEeEeccccEEEEEEccCCCcc---hHHHHHHHHHHHHCCcEEEecCCEEEEeCCCcC--CHHHHHHHHHHHHHH
Confidence            458899999999999999998653221   122223333333334433333233322211111  266677777778777


Q ss_pred             HHHH
Q psy6205          82 IEAM   85 (224)
Q Consensus        82 ~~~~   85 (224)
                      ++.+
T Consensus       444 l~~~  447 (453)
T PRK06943        444 LDAT  447 (453)
T ss_pred             HHHH
Confidence            7654

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=96.73  E-value=0.023  Score=50.05  Aligned_cols=123  Identities=13%  Similarity=0.015  Sum_probs=76.4

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchh--cccccccCCcccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGNGHPVA  160 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~G~p~~  160 (224)
                      +..+|+++-+....|.+.+.++..+.+++.        ++. .| ...  .....+    .+|++  ++.|.+|  .++|
T Consensus       156 ~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~-~~-~~~--~~~~~~----~~d~~~~s~~K~~g--~~~G  225 (397)
T TIGR01976       156 RTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHY-AP-HGL--IDVQAT----GADFLTCSAYKFFG--PHMG  225 (397)
T ss_pred             CceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhh-cc-ccC--CCHHHc----CCCEEEEechhhcC--CceE
Confidence            467788887778889888877777777765        442 22 111  122223    36866  5688874  4578


Q ss_pred             cceecHHHHHhhhcCCcccc-c-------CCCCcHHHHHHHHHHHHHHhhh-----------------hHHHHHHHHHHH
Q psy6205         161 AVITTKEIAKSFQETGVEYF-N-------TYGGNPVSCAVANAVMEVLETE-----------------NLREHALDVGNQ  215 (224)
Q Consensus       161 av~~~~~i~~~~~~~~~~~~-~-------T~~~~p~~~aaa~a~l~~~~~~-----------------~l~~~~~~~g~~  215 (224)
                      .+++++++.+.+......+. .       +-+-|....++..++++.+.+.                 ...++..++.++
T Consensus       226 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~  305 (397)
T TIGR01976       226 ILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEY  305 (397)
T ss_pred             EEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHH
Confidence            89999999887654211110 1       1123445666666777777432                 245666778888


Q ss_pred             HHHhhhhc
Q psy6205         216 LHTPKKEN  223 (224)
Q Consensus       216 l~~~l~~l  223 (224)
                      |++.|+++
T Consensus       306 l~~~L~~~  313 (397)
T TIGR01976       306 LLVGLSDL  313 (397)
T ss_pred             HHHHHhcC
Confidence            88888765

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK12403 putative aminotransferase; Provisional

Probab=96.72  E-value=0.0024  Score=57.95  Aligned_cols=82  Identities=12%  Similarity=0.053  Sum_probs=44.6

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCcccc---chhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSE---AQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~---a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      ++||.|+||||+|+|+|+||+.+..++.+....   ..++.......+.+..+..+..+..++.+  -+++..++.++-+
T Consensus       369 ~~~~~i~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~l~Ppl~--it~~eid~~~~~l  446 (460)
T PRK12403        369 GDHPLVGEVQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRSTLGRMIMAPALV--AGRAEIDELVDKT  446 (460)
T ss_pred             hcCCCEEeEeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEecCCEEEEECCCC--CCHHHHHHHHHHH
Confidence            458999999999999999998766555543321   11111111222332222211111111111  1266677777888


Q ss_pred             HHHHHHH
Q psy6205          79 QDLIEAM   85 (224)
Q Consensus        79 ~~~~~~~   85 (224)
                      ++.+..+
T Consensus       447 ~~al~~~  453 (460)
T PRK12403        447 RIAVDRT  453 (460)
T ss_pred             HHHHHHH
Confidence            8777654

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=96.68  E-value=0.0081  Score=53.07  Aligned_cols=119  Identities=16%  Similarity=0.106  Sum_probs=72.1

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchhc--ccccccC-Cccc-cc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGN-GHPV-AA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~-G~p~-~a  161 (224)
                      +..+|++|......|.+.+.++..+.+++.     |-.-++ ++   +......  ..+|+++  ++|.++| |..+ |+
T Consensus       139 ~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~-~~---~~~~pl~--~g~Divv~S~sK~l~g~g~~~gG~  212 (380)
T TIGR01325       139 NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFA-TP---VLQQPLK--LGADVVVYSATKHIDGQGRVMGGV  212 (380)
T ss_pred             CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCc-cc---ccCCchh--hCCCEEEeeccceecCCCCeEEEE
Confidence            578999998877778777766666666665     100010 11   1111122  4479886  8999987 5554 77


Q ss_pred             ceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q psy6205         162 VITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLH  217 (224)
Q Consensus       162 v~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~  217 (224)
                      +++++++.+.+......+  ....+|..++.++..++.+..  +...+++.++.++|.
T Consensus       213 vv~~~~~~~~l~~~~~~~--g~~~~p~~a~~~l~~l~tl~~r~~~~~~~a~~la~~L~  268 (380)
T TIGR01325       213 IAGSEELMAEVAVYLRHT--GPAMSPFNAWVLLKGLETLSLRMQKQFDSALAIAEWLQ  268 (380)
T ss_pred             EEeCHHHHHHHHHHHHhh--CCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHH
Confidence            788888887765431122  223467777777777777743  344555555555554

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=96.64  E-value=0.024  Score=51.24  Aligned_cols=138  Identities=12%  Similarity=0.103  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCchh
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDIV  147 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi~  147 (224)
                      .++|+++++.   ...+  .+++.  .+..|.+.+-++.-+.+++.       ...++|..+...+.. ..   -..|++
T Consensus       171 ~~~L~~~l~~---~~~~--lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~-~~---~~~D~l  239 (452)
T PTZ00094        171 YDKLEELAKA---FRPK--LIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPS-PF---PYADVV  239 (452)
T ss_pred             HHHHHHHHHH---hCCC--EEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCC-CC---CCCcEE
Confidence            4666666642   1122  23331  23456677766666666665       223355443211110 11   136887


Q ss_pred             cc--cccccCCcccccceecHHHHHhhhcCC-cccccCC--CCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHh
Q psy6205         148 TV--GKPMGNGHPVAAVITTKEIAKSFQETG-VEYFNTY--GGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHTP  219 (224)
Q Consensus       148 ~~--~K~l~~G~p~~av~~~~~i~~~~~~~~-~~~~~T~--~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~~  219 (224)
                      ++  .|.|.|-. -|.+++++++.+.+.... ...+.+|  +.++..+++..++|+.+.+   +.+.+++.++.++|.+.
T Consensus       240 ~~S~hK~l~GP~-Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~  318 (452)
T PTZ00094        240 TTTTHKSLRGPR-SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAA  318 (452)
T ss_pred             EcCCccCCCCCC-ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Confidence            65  59885422 133566666544332211 0111222  4567788888899999953   35788999999999999


Q ss_pred             hhhcC
Q psy6205         220 KKENN  224 (224)
Q Consensus       220 l~~l~  224 (224)
                      |++.|
T Consensus       319 L~~~g  323 (452)
T PTZ00094        319 LEKRG  323 (452)
T ss_pred             HHhCC
Confidence            97643

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=96.63  E-value=0.0025  Score=57.84  Aligned_cols=25  Identities=52%  Similarity=0.969  Sum_probs=21.8

Q ss_pred             CCCcceeeccCCceeEEEEeecCCC
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQ   27 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t   27 (224)
                      +||.|+||||.|||+|+||++++.+
T Consensus       372 ~~~~i~~VrG~Glm~gie~~~~~~~  396 (464)
T PRK06938        372 DYPQLGDVRGRGLMLGVEIVDPQGE  396 (464)
T ss_pred             hCCCeeeeeccceEEEEEeccCccc
Confidence            5899999999999999999876544

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=96.62  E-value=0.051  Score=47.37  Aligned_cols=139  Identities=12%  Similarity=0.058  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCchh
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDIV  147 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi~  147 (224)
                      .+++++.+..   + .++..|.+--.....|.+.|.++..+.+++.       -...||...   .....    ..+|++
T Consensus       119 ~~~l~~~l~~---~-~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~---~~~~~----~~~d~~  187 (368)
T PRK13479        119 AAEVEAALAA---D-PRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIP---IDIAE----LGIDAL  187 (368)
T ss_pred             HHHHHHHHHh---C-CCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCcc---ccccc----cCceEE
Confidence            4555555542   2 2343444434444567788877777777766       111233211   11111    236765


Q ss_pred             --cccccccCCcccccceecHHHHHhhhcCCcc---------------cccCCCCcHHHHHHHHHHHHHHhh----hhHH
Q psy6205         148 --TVGKPMGNGHPVAAVITTKEIAKSFQETGVE---------------YFNTYGGNPVSCAVANAVMEVLET----ENLR  206 (224)
Q Consensus       148 --~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~---------------~~~T~~~~p~~~aaa~a~l~~~~~----~~l~  206 (224)
                        ...|.+.|..-+|.+++++++.+.+......               ....|+.|..+.++..++++.+.+    ++..
T Consensus       188 v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~  267 (368)
T PRK13479        188 ISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARG  267 (368)
T ss_pred             EecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Confidence              5789886543468899999998876542111               011245677777788888887743    3556


Q ss_pred             HHHHHHHHHHHHhhhhcC
Q psy6205         207 EHALDVGNQLHTPKKENN  224 (224)
Q Consensus       207 ~~~~~~g~~l~~~l~~l~  224 (224)
                      ++++++.++|++.|+++|
T Consensus       268 ~~~~~~~~~l~~~L~~~g  285 (368)
T PRK13479        268 ARYANNQRTLVAGMRALG  285 (368)
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            778888888888887753

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=96.60  E-value=0.0029  Score=57.43  Aligned_cols=81  Identities=26%  Similarity=0.289  Sum_probs=43.9

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCC-----CCcc-ccchhhhccCCCcceeecCC---CccccCCCCCCCCCChhHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQK-----TPAT-SEAQHVITRPPVRMSTEAPC---PDVYRGKYPADKYPDEDLGVK   73 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~-----~p~~-~~a~~l~~~~~~~~~~~vp~---P~~yr~~~~~~~~~~~~~~~~   73 (224)
                      +||.|++|||.|||+|+||++++.+.     .+.. ..+..+...++..+.+..+.   ++..|...+...  +++..++
T Consensus       366 ~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~i--t~~eid~  443 (459)
T PRK06931        366 RYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLI--TQAECEE  443 (459)
T ss_pred             hCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCc--CHHHHHH
Confidence            58999999999999999998765432     1111 12222332222233333222   122221111111  2667777


Q ss_pred             HHHHHHHHHHHH
Q psy6205          74 YAQDVQDLIEAM   85 (224)
Q Consensus        74 ~~~~l~~~~~~~   85 (224)
                      .++.+++.+..+
T Consensus       444 ~~~~l~~~l~~~  455 (459)
T PRK06931        444 FIDRFEQALLAA  455 (459)
T ss_pred             HHHHHHHHHHHH
Confidence            788888777643

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=96.58  E-value=0.0025  Score=61.57  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=22.9

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCC
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQ   27 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t   27 (224)
                      .+||.|+||||+|+|+||||+++..+
T Consensus       737 ~~~p~V~~VRg~Gl~~~iel~~~~~~  762 (817)
T PLN02974        737 SSLPNVERVVSLGTVLALELDAEGSG  762 (817)
T ss_pred             hhCCCeeEEEeeeeEEEEEEecCCcc
Confidence            46899999999999999999987654

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=96.54  E-value=0.018  Score=49.98  Aligned_cols=100  Identities=14%  Similarity=0.108  Sum_probs=59.6

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhh-hhcCCCCCCchhccccccc-CCcccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAF-QLQGDDIIPDIVTVGKPMG-NGHPVA  160 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~-~~~g~~v~pDi~~~~K~l~-~G~p~~  160 (224)
                      +..++++.-.....|.+.+..+..+.+++.        ++.+|. .+. .-.. ..+.  -.--+-+|+|.+| .|+.+|
T Consensus       158 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~-~~~-~~~~~~~~~--~vi~~~S~SK~~g~~GlRiG  233 (361)
T PRK00950        158 KTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFA-EYD-YTPLALEYD--NLIIGRTFSKVFGLAGLRIG  233 (361)
T ss_pred             CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhC-ccc-hHHHHHhcC--CEEEEEeehHhhcCchhhcc
Confidence            344555543456678887777666555544        555552 111 1111 1111  0111237899998 689999


Q ss_pred             cceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHH
Q psy6205         161 AVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVME  198 (224)
Q Consensus       161 av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~  198 (224)
                      .+++++++.+.+...    ..++..++++.+++.+.|+
T Consensus       234 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~l~  267 (361)
T PRK00950        234 YGFVPEWLIDYYMRA----KTPFSLTRLSQAAAIAALS  267 (361)
T ss_pred             hhcCCHHHHHHHHHh----cCCCCCCHHHHHHHHHHhc
Confidence            999999998877643    2345567777777777664

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=96.52  E-value=0.056  Score=47.12  Aligned_cols=144  Identities=13%  Similarity=0.066  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHc-cCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMG-RNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~-~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      .+++++.++... ....++.+|++.-.....|...+-++..+.+++.       -..++|...   +....++  ..-.+
T Consensus       122 ~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~---~~~~~~~--~d~~~  196 (361)
T cd06452         122 PEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMP---VSGKELG--ADFIV  196 (361)
T ss_pred             HHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcC---CCHHHcC--CCEEE
Confidence            455555554211 0113566777765555567776666666666665       111122111   2223344  32223


Q ss_pred             hcccccccCCcccccceecHHHHHhhhcCCcccc---cC-C--CCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHh
Q psy6205         147 VTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYF---NT-Y--GGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTP  219 (224)
Q Consensus       147 ~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~---~T-~--~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~  219 (224)
                      .+++|.++++.++|.+++++++.+.+......+.   .+ +  +.++...+++.++++.+.+ -....+..+..++|.+.
T Consensus       197 ~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~  276 (361)
T cd06452         197 GSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAE  276 (361)
T ss_pred             ecCCccccCCCCeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999876789999999999988754311110   01 1  1122345555666665432 22233333445788888


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |+++
T Consensus       277 L~~l  280 (361)
T cd06452         277 LEKI  280 (361)
T ss_pred             HhcC
Confidence            8765

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=96.50  E-value=0.061  Score=47.02  Aligned_cols=136  Identities=13%  Similarity=0.138  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCchh
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDIV  147 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi~  147 (224)
                      ++++++.+.      .++..|.+--+....|.+.|-++.-+.+++.       ...++|..-   .-.+.    ..+|++
T Consensus       129 ~~~~~~~l~------~~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~---id~~~----~~~D~~  195 (371)
T PF00266_consen  129 LEDLEEALN------PDTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVP---IDLDE----LGADFL  195 (371)
T ss_dssp             HHHHHHHHH------TTESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS-----TTT----TTESEE
T ss_pred             hhhhhhhhc------cccceEEeecccccccEEeeeceehhhhhccCCceeEechhcccccc---ccccc----ccccee
Confidence            455555553      4777888888888899999988888888886       222243221   12223    347887


Q ss_pred             cc--cccccCCcccccceecHHHHHhhhcCCcccc----------------cCC---CCcHHHHHHHHHHHHHHhh---h
Q psy6205         148 TV--GKPMGNGHPVAAVITTKEIAKSFQETGVEYF----------------NTY---GGNPVSCAVANAVMEVLET---E  203 (224)
Q Consensus       148 ~~--~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~----------------~T~---~~~p~~~aaa~a~l~~~~~---~  203 (224)
                      ++  -| +.|+.-+|.+.++++..+.+.+......                ..|   +-|.....+..++|+.+++   +
T Consensus       196 ~~s~~K-l~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~  274 (371)
T PF00266_consen  196 VFSSHK-LGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIE  274 (371)
T ss_dssp             EEESTS-TTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccc-cCCCCchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccc
Confidence            65  58 8886667999999999988853210000                001   2455567777788888854   4


Q ss_pred             hHHHHHHHHHHHHHHhhhhcC
Q psy6205         204 NLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       204 ~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      ++.++..++.+++++.|++++
T Consensus       275 ~i~~~~~~l~~~~~~~l~~~~  295 (371)
T PF00266_consen  275 RIRERIRELAEYLREALEELP  295 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             cchhhhhhHHHHHHhhhhcCC
Confidence            677888999999999988753

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK05764 aspartate aminotransferase; Provisional

Probab=96.48  E-value=0.04  Score=48.53  Aligned_cols=74  Identities=15%  Similarity=0.145  Sum_probs=52.0

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++|.++ .|+.+|++++++++.+.+...  ....+.+.++++..++.+.|+..++  +.+.++.++.-+++++.|+++
T Consensus       235 s~SK~~~~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  311 (393)
T PRK05764        235 GFSKAYAMTGWRLGYAAGPKELIKAMSKL--QSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEI  311 (393)
T ss_pred             cCcccccCccceeEEEecCHHHHHHHHHH--HhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            5999998 789999999999999887642  1123456678888888887752111  245556666677777777654

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=96.47  E-value=0.048  Score=47.50  Aligned_cols=132  Identities=15%  Similarity=0.029  Sum_probs=73.8

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCC---CCchhcc--cccccCCc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDI---IPDIVTV--GKPMGNGH  157 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v---~pDi~~~--~K~l~~G~  157 (224)
                      .++.+++.| ....|.+.+.++..+.+++.        .+.++ -.+..-+.....+.++   ..|.+++  -|-..++.
T Consensus       154 ~~~vv~~~~-~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~-~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~  231 (373)
T TIGR03812       154 TIGIVGIAG-TTELGQIDDIEELSKIALENGIYLHVDAAFGGF-VIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPI  231 (373)
T ss_pred             cEEEEEECC-CCCCCccCCHHHHHHHHHHcCCeEEEEcCchhH-HHHHHhcCCCCCCccccCCCCCEEEECccccCCCcC
Confidence            345666766 35578888777777777765        22211 0000000000001011   2344433  26323346


Q ss_pred             ccccce-ecHHHHHhhhcCCccccc------CCCCcHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHhhhhcC
Q psy6205         158 PVAAVI-TTKEIAKSFQETGVEYFN------TYGGNPVSCAVANAVMEVLETE---NLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       158 p~~av~-~~~~i~~~~~~~~~~~~~------T~~~~p~~~aaa~a~l~~~~~~---~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      |.|+++ .++++.+.+......+..      +.+-++.+++++.++|+.+.++   ++.+++.++.++|+++|++++
T Consensus       232 ~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g  308 (373)
T TIGR03812       232 PAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIG  308 (373)
T ss_pred             CceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            777666 577777766422111111      1234567888999999988654   578899999999999998764

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PLN00175 aminotransferase family protein; Provisional

Probab=96.44  E-value=0.036  Score=49.47  Aligned_cols=128  Identities=15%  Similarity=0.153  Sum_probs=74.4

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCc-h--hccccccc-
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPD-I--VTVGKPMG-  154 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pD-i--~~~~K~l~-  154 (224)
                      ++.+|++.....-.|.+. +++.++++.++            +...|-..+. .-....+. +..+. |  -+|||.++ 
T Consensus       187 ~~k~i~i~~p~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~-~~~~~vi~i~SfSK~~~~  263 (413)
T PLN00175        187 KTRAILINTPHNPTGKMF-TREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLP-GMYERTVTMNSLGKTFSL  263 (413)
T ss_pred             CceEEEecCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCC-CCcCcEEEEecchhhccC
Confidence            456677665455567654 56666776665            2222211111 00111110 01122 2  26899998 


Q ss_pred             CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         155 NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 ~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .|+-+|.+++++++++.+...  ....+++.+++...++.+.|+.-++  +++.++.++.-+.+.+.|++.
T Consensus       264 ~G~RiG~~v~~~~l~~~l~~~--~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  332 (413)
T PLN00175        264 TGWKIGWAIAPPHLTWGVRQA--HSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEV  332 (413)
T ss_pred             cchheeeeEeCHHHHHHHHHH--HhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            789999999999999887643  2224677777877777777753211  234556666677777777654

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=96.44  E-value=0.0043  Score=56.25  Aligned_cols=80  Identities=24%  Similarity=0.279  Sum_probs=45.6

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCC---CccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPC---PDVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~---P~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      ++||.++||||+|||+|+|++.+..  .+....+..+.......+.+..+.   ++..|...+...  +++..++.++.|
T Consensus       362 ~~~~~~~~VrG~Gl~~gve~~~~~~--~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~i--t~~~id~~~~~l  437 (457)
T PRK05639        362 ESFEVIGDVRGKGLMIGVEIVKENG--KPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVI--TKEIAEKGLEIM  437 (457)
T ss_pred             HhCCCEEeeccceeEEEEEEecCCC--CCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCcc--CHHHHHHHHHHH
Confidence            3589999999999999999986433  222222333333333334433332   233333222221  366677778888


Q ss_pred             HHHHHHH
Q psy6205          79 QDLIEAM   85 (224)
Q Consensus        79 ~~~~~~~   85 (224)
                      ++.++.+
T Consensus       438 ~~~l~~~  444 (457)
T PRK05639        438 ERAIKDA  444 (457)
T ss_pred             HHHHHHH
Confidence            8877654

>PRK07550 hypothetical protein; Provisional

Probab=96.29  E-value=0.038  Score=48.66  Aligned_cols=75  Identities=11%  Similarity=0.067  Sum_probs=51.2

Q ss_pred             hhccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhh
Q psy6205         146 IVTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       146 i~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +.+++|.++ .|+.+|++++++++++.+...  ....+.+.++++..++.+.|+.+++  ++..+++++..+++.+.|++
T Consensus       231 ~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~--~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  308 (386)
T PRK07550        231 LYSFSKSYALTGHRVGAVVASPARIAEIEKF--MDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFAR  308 (386)
T ss_pred             EecchhhccCcccceEeeecCHHHHHHHHHH--HhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            348999998 789999999999998877642  2223455567776776666654432  23455667777777777754

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=96.29  E-value=0.027  Score=48.86  Aligned_cols=126  Identities=11%  Similarity=0.050  Sum_probs=79.0

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPVAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~~a  161 (224)
                      +...|++..+....|.+.+.++..+.+++.       -..++|..-   +..+.    ...|+++++  |.+| -..+|+
T Consensus       138 ~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~---~~~~~----~~~D~~~~s~~K~~g-p~g~g~  209 (353)
T TIGR03235       138 DTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKIT---VDLSA----DRIDLISCSGHKIYG-PKGIGA  209 (353)
T ss_pred             CCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcc---ccccc----cCCCEEEeehhhcCC-CCceEE
Confidence            467888888888899998877777777776       112232211   11111    238998887  9642 123678


Q ss_pred             ceecHHHHHhhhcCCccc-------ccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhcC
Q psy6205         162 VITTKEIAKSFQETGVEY-------FNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       162 v~~~~~i~~~~~~~~~~~-------~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      ++++++..+........+       ....+-|+...++..++|+++.+  ++..++.+++.++|+++|+++|
T Consensus       210 l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~g  281 (353)
T TIGR03235       210 LVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTLG  281 (353)
T ss_pred             EEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCC
Confidence            888887532211000000       12334566777778888888753  4678889999999999987653

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=96.29  E-value=0.042  Score=47.35  Aligned_cols=121  Identities=18%  Similarity=0.184  Sum_probs=72.9

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc----ccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG----KPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~----K~l~~G~  157 (224)
                      +++.+|++....   |...+.++..+.+++.        +++ +|...    .....+  ...|+.++|    |.+++| 
T Consensus       105 ~~~~~v~~~~~~---G~~~~~~~i~~l~~~~~i~li~D~a~~-~g~~~----~~~~~~--~~~d~~~~S~~~~K~~~~~-  173 (352)
T cd00616         105 PRTKAIIPVHLY---GNPADMDAIMAIAKRHGLPVIEDAAQA-LGATY----KGRKVG--TFGDAGAFSFHPTKNLTTG-  173 (352)
T ss_pred             cCCeEEEEECCC---CCcCCHHHHHHHHHHcCCeEEEECCCC-CCCeE----CCEEcc--cCcceeEEcCCCCCCCccc-
Confidence            356777776654   5555555555555554        333 32211    111223  346888876    999644 


Q ss_pred             ccccceec-HHHHHhhhc---CCc----------ccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITT-KEIAKSFQE---TGV----------EYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~-~~i~~~~~~---~~~----------~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ..|+++++ +++.+.+..   .+.          ....++..+++.++.++..++.+  +++.++.+++.+++++.|+++
T Consensus       174 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~  251 (352)
T cd00616         174 EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADL  251 (352)
T ss_pred             CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCC
Confidence            34556665 577665432   110          11235667889999998887776  447788899999999998764

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=96.28  E-value=0.0075  Score=53.16  Aligned_cols=73  Identities=26%  Similarity=0.336  Sum_probs=42.7

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeec-CCCccccCCCCCCCCCChhHHHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEA-PCPDVYRGKYPADKYPDEDLGVKYAQDVQDL   81 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~v-p~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~   81 (224)
                      ++|.|.+|||+|||.|+||..+..        +..++......+.+.. ..+++.|-..+-.-  +++..+..++.+++.
T Consensus       326 ~~~~v~~vRG~GLmiGiel~~~~~--------a~~~~~~~~~~gvL~~~a~~~ViR~~PpL~i--~~eei~~~~~~l~~~  395 (404)
T COG4992         326 RYPLVKEVRGRGLMIGIELKEPYR--------ARDIVRALREEGVLVLPAGPNVIRFLPPLVI--TEEEIDEALDALERA  395 (404)
T ss_pred             cCCceeeeecceeEEEEEecCccc--------HHHHHHHHHHCCeEEecCCCCeEEecCCccC--CHHHHHHHHHHHHHH
Confidence            478889999999999999976431        1112222222233322 34555554433221  256667777888887


Q ss_pred             HHHH
Q psy6205          82 IEAM   85 (224)
Q Consensus        82 ~~~~   85 (224)
                      ++..
T Consensus       396 l~~~  399 (404)
T COG4992         396 LAAA  399 (404)
T ss_pred             HHHh
Confidence            7753

>PRK06541 hypothetical protein; Provisional

Probab=96.23  E-value=0.0081  Score=54.52  Aligned_cols=80  Identities=21%  Similarity=0.202  Sum_probs=45.6

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCcccc------chhhhccCCCcceeecCCC---ccccCCCCCCCCCChhHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSE------AQHVITRPPVRMSTEAPCP---DVYRGKYPADKYPDEDLGVK   73 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~------a~~l~~~~~~~~~~~vp~P---~~yr~~~~~~~~~~~~~~~~   73 (224)
                      +||.|+++||.|+|+|+||+.+..++.|+...      ...+....+..+.+..+.+   +..|...+...  +++..++
T Consensus       367 ~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~--t~~~id~  444 (460)
T PRK06541        367 DLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLIS--GQEEFDE  444 (460)
T ss_pred             cCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecCCCCCEEEEECCCCC--CHHHHHH
Confidence            48889999999999999999776665554321      0122223333344333221   22222222111  2566777


Q ss_pred             HHHHHHHHHHH
Q psy6205          74 YAQDVQDLIEA   84 (224)
Q Consensus        74 ~~~~l~~~~~~   84 (224)
                      .++.|++.+..
T Consensus       445 ~~~~l~~~l~~  455 (460)
T PRK06541        445 IEQILRSVLTE  455 (460)
T ss_pred             HHHHHHHHHHH
Confidence            77778777764

>TIGR02006 IscS cysteine desulfurase IscS

Probab=96.20  E-value=0.031  Score=49.58  Aligned_cols=124  Identities=12%  Similarity=0.094  Sum_probs=79.1

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCcccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPVA  160 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~~  160 (224)
                      +..+|++..+....|.+.+.++..+.+++.        +|+ +|...     ....+  ..+|+++++  |.+| ...+|
T Consensus       142 ~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a-~g~~~-----~~~~~--~~~D~~~~s~~K~~g-p~G~G  212 (402)
T TIGR02006       142 DTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQS-VGKIP-----INVNE--LKVDLMSISGHKIYG-PKGIG  212 (402)
T ss_pred             CCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchh-cCCcc-----cCccc--cCCCEEEEehhhhcC-CCceE
Confidence            467888888888899998877777777776        443 33221     11112  458999999  9654 23478


Q ss_pred             cceecHHHHHhhhcC--C--cc-cccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         161 AVITTKEIAKSFQET--G--VE-YFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       161 av~~~~~i~~~~~~~--~--~~-~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++.+++..+.+...  +  .. .....+-|...+++..++|+.+++  +...++.+++.++|+++|+++
T Consensus       213 ~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~  282 (402)
T TIGR02006       213 ALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSI  282 (402)
T ss_pred             EEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence            888887654433221  0  00 011233455666666688888854  345677888889998888754

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=96.18  E-value=0.0069  Score=54.66  Aligned_cols=78  Identities=21%  Similarity=0.234  Sum_probs=42.7

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCC---CccccCCCCCCCCCChhHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPC---PDVYRGKYPADKYPDEDLGVKYAQDVQ   79 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~---P~~yr~~~~~~~~~~~~~~~~~~~~l~   79 (224)
                      +||.|++|||.|+|+++|++++. +..+....+..+.......+....+.   +++.|-..+...  +++..++.++.|+
T Consensus       361 ~~~~i~~vrg~G~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~--t~~~i~~~~~~l~  437 (443)
T PRK06058        361 EDDRIGDVRGRGAMIAIELVKPG-TTEPDAELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVI--GDELLREGLDVLE  437 (443)
T ss_pred             hCCcEEeeeccceEEEEEEecCC-CCCCcHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCcc--CHHHHHHHHHHHH
Confidence            47999999999999999998764 22333333333443333334433321   233332111111  2556666667676


Q ss_pred             HHHH
Q psy6205          80 DLIE   83 (224)
Q Consensus        80 ~~~~   83 (224)
                      +.++
T Consensus       438 ~~l~  441 (443)
T PRK06058        438 AALA  441 (443)
T ss_pred             HHHH
Confidence            6654

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=96.15  E-value=0.0068  Score=53.37  Aligned_cols=70  Identities=17%  Similarity=0.132  Sum_probs=38.7

Q ss_pred             CCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCC-CccccCCCCCCCCCChhHHHHHHHHHHHHH
Q psy6205           4 YPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPC-PDVYRGKYPADKYPDEDLGVKYAQDVQDLI   82 (224)
Q Consensus         4 ~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~-P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~   82 (224)
                      +|.|+||||+|||+|+||+..      +.    .+....+..+.+..+. ++..|..++..-  +++..++.++.|++.+
T Consensus       291 ~~~v~~vRG~Gl~~gve~~~~------~~----~i~~~~~~~Gll~~~~g~~vlr~~Ppl~i--t~~~i~~~~~~l~~~l  358 (364)
T PRK04013        291 GERVVTTRGRGLMIGIVLKKP------VG----KYVEELQNRGYLVHTAGQRVIRLLPPLII--SKDTMEEAKSAIEGVI  358 (364)
T ss_pred             cCcceeeeeCcEEEEEEeCCc------HH----HHHHHHHhCCcEEeeCCCCEEEEeCCccc--CHHHHHHHHHHHHHHH
Confidence            478999999999999999631      11    1222222223222222 133332222111  2566777788888777


Q ss_pred             HHH
Q psy6205          83 EAM   85 (224)
Q Consensus        83 ~~~   85 (224)
                      +.+
T Consensus       359 ~~~  361 (364)
T PRK04013        359 NDI  361 (364)
T ss_pred             HHH
Confidence            643

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=96.10  E-value=0.059  Score=47.77  Aligned_cols=124  Identities=13%  Similarity=0.080  Sum_probs=80.0

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCcccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPVA  160 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~~  160 (224)
                      +...|++.-+....|.+.+.++..+.+++.        +| ++|..-   ...+.    ..+|+++++  |.+|- .-+|
T Consensus       164 ~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~-~~g~~~---~~~~~----~~~D~~~~s~~K~~gp-~G~G  234 (406)
T PRK09295        164 RTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQ-AVMHHP---VDVQA----LDCDFYVFSGHKLYGP-TGIG  234 (406)
T ss_pred             CcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEccc-ccCccc---cCchh----cCCCEEEeehhhccCC-CCcE
Confidence            456777777777789998877777777775        33 233221   11122    347988776  95541 2267


Q ss_pred             cceecHHHHHhhhcC--Ccc--------c----------ccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHH
Q psy6205         161 AVITTKEIAKSFQET--GVE--------Y----------FNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLH  217 (224)
Q Consensus       161 av~~~~~i~~~~~~~--~~~--------~----------~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~  217 (224)
                      .+++++++.+.+...  +..        .          +.+-+-|..+.++..++|+.+.+   +.+.++.+++.+++.
T Consensus       235 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~  314 (406)
T PRK09295        235 ILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYAL  314 (406)
T ss_pred             EEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            888999887765321  000        0          01114567788888899998865   457788888999999


Q ss_pred             Hhhhhc
Q psy6205         218 TPKKEN  223 (224)
Q Consensus       218 ~~l~~l  223 (224)
                      ++|+++
T Consensus       315 ~~l~~~  320 (406)
T PRK09295        315 SQLESV  320 (406)
T ss_pred             HHHhcC
Confidence            988764

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=96.08  E-value=0.085  Score=46.58  Aligned_cols=124  Identities=11%  Similarity=0.017  Sum_probs=76.4

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCcccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPVA  160 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~~  160 (224)
                      +...|++.-+....|.+.+.++..+.+++.        ++. +|..-   .....    ..+|+++++  |.+|- .-+|
T Consensus       157 ~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~-~~~~~---~~~~~----~~~d~~~~s~~K~~gp-~G~G  227 (398)
T TIGR03392       157 RTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQG-VVHGP---PDVQA----LDIDFYAFSGHKLYGP-TGIG  227 (398)
T ss_pred             CceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhh-cCCCC---CChhh----cCCCEEEEecccccCC-CceE
Confidence            455666766677788888877777777776        442 22111   11111    347999998  96652 1268


Q ss_pred             cceecHHHHHhhhcCC--cc----------------c-ccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHH
Q psy6205         161 AVITTKEIAKSFQETG--VE----------------Y-FNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHT  218 (224)
Q Consensus       161 av~~~~~i~~~~~~~~--~~----------------~-~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~  218 (224)
                      ++++++++.+.+....  ..                . +-+-+-|..+.++..++++.+++   +++.++.+++.+++.+
T Consensus       228 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~  307 (398)
T TIGR03392       228 VLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEE  307 (398)
T ss_pred             EEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            8889999887664210  00                0 00012344567777777877754   3567778888889988


Q ss_pred             hhhhc
Q psy6205         219 PKKEN  223 (224)
Q Consensus       219 ~l~~l  223 (224)
                      .|+++
T Consensus       308 ~l~~l  312 (398)
T TIGR03392       308 RLAQL  312 (398)
T ss_pred             HHhcC
Confidence            88764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK07324 transaminase; Validated

Probab=96.08  E-value=0.037  Score=48.68  Aligned_cols=73  Identities=12%  Similarity=0.074  Sum_probs=47.4

Q ss_pred             hccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhh
Q psy6205         147 VTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       147 ~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~  221 (224)
                      -++||.+| .|+-+|.+++++++++.+...  ....|++.++++..++..+|+..++  +...+.+++.-+.+.+.|+
T Consensus       218 ~s~SK~~~~~G~RiG~i~~~~~li~~~~~~--~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~  293 (373)
T PRK07324        218 NSMSKTYSLPGIRVGWIAANEEVIDILRKY--RDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVA  293 (373)
T ss_pred             ecchhhcCCccceeEEEecCHHHHHHHHHH--hCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            37999998 689999999999999888653  2234667778888877777753211  1223333444444545444

>KOG1368|consensus

Probab=96.07  E-value=0.042  Score=46.69  Aligned_cols=143  Identities=15%  Similarity=0.141  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHc--cCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-HHhCCccc---cccch-hhhhcCCCC----
Q psy6205          74 YAQDVQDLIEAMG--RNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-VQVGFGRV---GTHWW-AFQLQGDDI----  142 (224)
Q Consensus        74 ~~~~l~~~~~~~~--~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-v~tG~Grt---G~~~~-~~~~~g~~v----  142 (224)
                      .++++|+.+..-.  -+......|.+|--+..-|-...|-+|+.++.++ -+.|+ ..   |...| +.-..|..|    
T Consensus       135 ~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~gl-kLH~DGARi~NAavasgV~vk~i~  213 (384)
T KOG1368|consen  135 DLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGL-KLHMDGARIFNAAVASGVPVKKIC  213 (384)
T ss_pred             eHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCC-eeecchhhhhhHHHHcCCCHHHHH
Confidence            4677777765210  0112346788998887756677888999999999 11111 00   00011 111112000    


Q ss_pred             -CCc--hhcccccccCCccc-ccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy6205         143 -IPD--IVTVGKPMGNGHPV-AAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHT  218 (224)
Q Consensus       143 -~pD--i~~~~K~l~~G~p~-~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~  218 (224)
                       .-|  -+||||+||.  |+ |.++++++..+.....-..++.-+-=.-+-||||+-+|+.--  .++..-++....|.+
T Consensus       214 ~~fDSVsiCLSKglgA--PVGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~~--~~L~~dHk~A~~lAe  289 (384)
T KOG1368|consen  214 SAFDSVSICLSKGLGA--PVGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDENV--PLLRADHKRAKELAE  289 (384)
T ss_pred             HhhhhhhhhhhccCCC--CcccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHH
Confidence             123  3599999974  22 336788887765432111222222223467788887776532  244455555555544


Q ss_pred             hhh
Q psy6205         219 PKK  221 (224)
Q Consensus       219 ~l~  221 (224)
                      .++
T Consensus       290 ~~~  292 (384)
T KOG1368|consen  290 YIN  292 (384)
T ss_pred             Hhc
Confidence            443

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=95.92  E-value=0.037  Score=49.17  Aligned_cols=124  Identities=12%  Similarity=0.102  Sum_probs=74.2

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchh--cccccccC-Ccc-ccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN-GHP-VAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~-G~p-~~a  161 (224)
                      +..+|++|......|.+.+.+++.+.+++.     |-.-+ .++. .  ....+  .-.|++  +++|.+++ |.+ .|+
T Consensus       144 ~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~-a~~~-~--~~~~~--~g~Divv~S~sK~lgg~g~~~gG~  217 (391)
T TIGR01328       144 NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTF-ATPM-L--TNPVA--LGVDVVVHSATKYIGGHGDVVAGL  217 (391)
T ss_pred             CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCC-chhc-c--CCchh--cCCCEEEccccccccCCCCceEEE
Confidence            567899997777778877766666666665     11111 1111 0  11112  336766  47899986 554 466


Q ss_pred             ceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         162 VITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       162 v~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +++++++.+.+.........+...+|..++.++..|+.+..  ..++.+++.+++.+.|++
T Consensus       218 v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl~~--r~~~~~~na~~la~~L~~  276 (391)
T TIGR01328       218 ICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTLNI--RMKRHSENAMKVAEYLKS  276 (391)
T ss_pred             EEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcHHH--HHHHHHHHHHHHHHHHHh
Confidence            78889888777632111122345688888888887766643  355556666666666653

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=95.85  E-value=0.088  Score=45.91  Aligned_cols=126  Identities=14%  Similarity=0.115  Sum_probs=76.5

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPVAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~~a  161 (224)
                      ++.+|++.......|.+.+.++..+.+++.       -..++|...   +..+.+    .+|+++++  |.+++....|+
T Consensus       137 ~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~---~~~~~~----~~D~~~~s~~K~l~~p~g~g~  209 (376)
T TIGR01977       137 NTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIP---IDMTEL----AIDMLAFTGHKGLLGPQGTGG  209 (376)
T ss_pred             CCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccC---CCchhc----CCCEEEecccccccCCCCceE
Confidence            567788887788889888877777777665       223344332   112223    37887654  98865333455


Q ss_pred             ceecHHHH-HhhhcCCccc--------------ccCCCCcHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHhhhhc
Q psy6205         162 VITTKEIA-KSFQETGVEY--------------FNTYGGNPVSCAVANAVMEVLETE---NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       162 v~~~~~i~-~~~~~~~~~~--------------~~T~~~~p~~~aaa~a~l~~~~~~---~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++.+++.. ..+...+...              +.+.+-+...+++..++|+.+.+.   ++.++.+++.+++.++|+++
T Consensus       210 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~  289 (376)
T TIGR01977       210 LYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREI  289 (376)
T ss_pred             EEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC
Confidence            66665531 1111110000              011234566777788899988653   57888999999999998753

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=95.82  E-value=0.011  Score=53.05  Aligned_cols=22  Identities=36%  Similarity=0.453  Sum_probs=19.4

Q ss_pred             CCCCcceeeccCCceeEEEEee
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVT   23 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~   23 (224)
                      .++|.|+||||+|+|++||+..
T Consensus       348 ~~~~~v~~vRg~Gl~~~ie~~~  369 (422)
T PRK05630        348 AHLPGVADVRVLGAIGVVEMEQ  369 (422)
T ss_pred             hcCCCeeeeeccccEEEEEECC
Confidence            3588999999999999999964

>PRK02948 cysteine desulfurase; Provisional

Probab=95.78  E-value=0.054  Score=47.48  Aligned_cols=125  Identities=18%  Similarity=0.048  Sum_probs=78.6

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchh--cccccccCCcccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGNGHPVA  160 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~G~p~~  160 (224)
                      +...|+++-+....|.+.+.++..+.+++.        ++ .||....   ..+.++    .|++  ++.|.+|- .-+|
T Consensus       138 ~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~-~~g~~~~---~~~~~~----~d~~~~s~~K~~gp-~G~G  208 (381)
T PRK02948        138 DTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQ-TFGKLPI---DVFEMG----IDSLSVSAHKIYGP-KGVG  208 (381)
T ss_pred             CCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChh-hcccccc---CcccCC----CCEEEecHHhcCCC-CcEE
Confidence            456788888888899998877777766665        22 2443321   122233    5665  67897651 1157


Q ss_pred             cceecHHH-HHhhhcCC--cccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhcC
Q psy6205         161 AVITTKEI-AKSFQETG--VEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       161 av~~~~~i-~~~~~~~~--~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      +++.++++ +.......  ..-...++-|+.+.+++.++|+.+.+  ++..++++++.++|.++|++++
T Consensus       209 ~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  277 (381)
T PRK02948        209 AVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLP  277 (381)
T ss_pred             EEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            77777764 11111000  00112456788888999999987732  4678889999999999998764

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=95.73  E-value=0.11  Score=45.83  Aligned_cols=124  Identities=14%  Similarity=0.094  Sum_probs=76.6

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhc--ccccccCCcccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGNGHPVA  160 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~G~p~~  160 (224)
                      ++.+|++.-+....|.+.+.++..+.+++.        .+ ++|..-   .....    ..+|+++  +.|.+|. ..+|
T Consensus       159 ~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~-~~g~~~---~~~~~----~~~d~~~~s~~K~~gp-~G~g  229 (403)
T TIGR01979       159 KTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQ-AVPHMP---VDVQA----LDCDFYVFSGHKMYGP-TGIG  229 (403)
T ss_pred             CCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchh-hcCccc---cCccc----cCCCEEEEecccccCC-CCce
Confidence            566777777777789888877776666665        22 121110   11111    3478875  4597652 2367


Q ss_pred             cceecHHHHHhhhcCCcc--------c-----------ccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHH
Q psy6205         161 AVITTKEIAKSFQETGVE--------Y-----------FNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHT  218 (224)
Q Consensus       161 av~~~~~i~~~~~~~~~~--------~-----------~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~  218 (224)
                      ++.+++++.+.+......        +           +.+-+.+..+.++..++++.+.+   +.+.++..++.+++++
T Consensus       230 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~  309 (403)
T TIGR01979       230 VLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALE  309 (403)
T ss_pred             EEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            788999887765421000        0           00112355567777788888754   4678899999999999


Q ss_pred             hhhhc
Q psy6205         219 PKKEN  223 (224)
Q Consensus       219 ~l~~l  223 (224)
                      +|+++
T Consensus       310 ~l~~~  314 (403)
T TIGR01979       310 RLGEI  314 (403)
T ss_pred             HHhcC
Confidence            88764

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=95.73  E-value=0.028  Score=48.76  Aligned_cols=73  Identities=15%  Similarity=0.243  Sum_probs=53.9

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhcC
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      +|||.+| .|+-+|.+++++++++.+...    ...+.-|.++.+++.++|+--+ .+...+++++.-+++.+.|++++
T Consensus       195 SfSK~~gl~GlRiGy~v~~~~li~~l~~~----~~~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g  269 (339)
T PRK06959        195 SVGKFFGLAGVRAGFVLAAPALLAALRDA----LGAWTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAHG  269 (339)
T ss_pred             cChhhcCCcchheEEEecCHHHHHHHHHh----cCCCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            7999999 789999999999999988653    2345567788888888875321 23456667777778888887653

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=95.69  E-value=0.014  Score=52.65  Aligned_cols=77  Identities=30%  Similarity=0.345  Sum_probs=41.9

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCCC-ccccCCCCCCCCCChhHHHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCP-DVYRGKYPADKYPDEDLGVKYAQDVQDL   81 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P-~~yr~~~~~~~~~~~~~~~~~~~~l~~~   81 (224)
                      +||.+++|||.|+|+++||+.+.  +.+....+..+....+..+.+..+.. +..|...+...  +++..++.++.+++.
T Consensus       361 ~~~~~~~vrg~G~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~Gil~~~~~~~~lr~~p~l~~--t~~~id~~~~~l~~~  436 (441)
T PRK05769        361 KYEFIGDVRGLGLMIGVELVKDR--KEPDPKLRDKVLYEAFKRGLLLLGAGKSAIRIIPPLII--TEEEADIGLEILEEA  436 (441)
T ss_pred             hCCCeeeeecceEEEEEEeccCC--ccccHHHHHHHHHHHHhCCcEEecCCCCEEEEeCCCCC--CHHHHHHHHHHHHHH
Confidence            48999999999999999998654  22222223333333333344333321 22222112111  256666777777766


Q ss_pred             HH
Q psy6205          82 IE   83 (224)
Q Consensus        82 ~~   83 (224)
                      +.
T Consensus       437 l~  438 (441)
T PRK05769        437 IK  438 (441)
T ss_pred             HH
Confidence            64

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=95.68  E-value=0.077  Score=46.17  Aligned_cols=101  Identities=13%  Similarity=0.168  Sum_probs=60.2

Q ss_pred             ceEEEEccccCCCCcccCCHHHHHHHHHH----------HHhCCccccccchhhhhcCCCCCCchhccccccc-CCcccc
Q psy6205          92 PCAFFAESLQSCGGQIIPPANYLREVYKH----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMG-NGHPVA  160 (224)
Q Consensus        92 iaavi~Epv~~~~G~~~~~~~~l~~~~~~----------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~-~G~p~~  160 (224)
                      ..++++-..+.-.|.+.+..+..+.++..          +...|...+......+...  -..-+-+|||.++ .|+-+|
T Consensus       155 ~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~--~vi~~~SfSK~~~~~GlRiG  232 (357)
T PRK14809        155 ERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERD--DVAVLRTFSKAYGLAGLRLG  232 (357)
T ss_pred             CcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCC--CEEEEecchhHhcCcchhhe
Confidence            34555555555578777666544433321          4333422222111111111  1122347999998 689999


Q ss_pred             cceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHH
Q psy6205         161 AVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVME  198 (224)
Q Consensus       161 av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~  198 (224)
                      .+++++++++.+...    ..++..++++..++.+.|+
T Consensus       233 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~l~  266 (357)
T PRK14809        233 YAVVPEEWADAYARV----NTPFAASELACRAGLAALD  266 (357)
T ss_pred             eeecCHHHHHHHHHh----CCCCCCCHHHHHHHHHHhC
Confidence            999999999888642    2467778888888887774

>PRK06348 aspartate aminotransferase; Provisional

Probab=95.66  E-value=0.14  Score=45.03  Aligned_cols=73  Identities=12%  Similarity=0.054  Sum_probs=51.1

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhh
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +|||.++ .|+-+|.+++++++.+.+...  ....+++.++++-.++...|+..++  +.+.+..++.-+++.+.|++
T Consensus       231 SfSK~~~l~GlRiG~~v~~~~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~  306 (384)
T PRK06348        231 SFSKDFAMTGWRIGYVIAPDYIIETAKII--NEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIES  306 (384)
T ss_pred             cchhccCCccccceeeecCHHHHHHHHHH--HHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6899998 789999999999998877532  2234677788888888777764321  23455556666666666654

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=95.63  E-value=0.018  Score=51.94  Aligned_cols=77  Identities=17%  Similarity=0.080  Sum_probs=41.1

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLI   82 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~   82 (224)
                      ++|.|+||||+|+++++|++.......   ..+..+..+....+.+..+..+..|...+...  +++..++.++.|++.+
T Consensus       364 ~~~~v~~vrG~Gl~~~~~l~~~~~~~~---~~~~~~~~~l~~~Gvl~~~~~~~lr~~Ppl~~--t~~eid~~~~~l~~~l  438 (442)
T PRK13360        364 DAPHVIDIRNLGLVGAVELAPRDGKPG---KRAYEVFLKCFEKGLMIRYTGDILALSPPLII--EEAQIDELFDILAQAL  438 (442)
T ss_pred             cCCCeeeeeccceEEEEEEecCCCCcc---hhHHHHHHHHHHCCcEEEecCCEEEEeCCCcc--CHHHHHHHHHHHHHHH
Confidence            478899999999999999985332111   11222222222233333333333332222111  2566677777777766


Q ss_pred             HH
Q psy6205          83 EA   84 (224)
Q Consensus        83 ~~   84 (224)
                      +.
T Consensus       439 ~~  440 (442)
T PRK13360        439 KE  440 (442)
T ss_pred             HH
Confidence            53

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=95.61  E-value=0.019  Score=51.56  Aligned_cols=80  Identities=21%  Similarity=0.232  Sum_probs=44.6

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCC---CccccCCCCCCCCCChhHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPC---PDVYRGKYPADKYPDEDLGVKYAQDVQ   79 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~---P~~yr~~~~~~~~~~~~~~~~~~~~l~   79 (224)
                      ++|.+++|||.|+|.++||+.+ ++..|....+..+.......+.+..+.   .+..|-.++..-  +++..++.++.|+
T Consensus       340 ~~~~i~~vrG~Gl~~~iel~~~-~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~i--t~~~id~~~~~l~  416 (425)
T PRK07495        340 TVPEIADIRGPGFMNAVEFNDA-DSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITI--QDDVFAEALDILE  416 (425)
T ss_pred             hCCCeeeeecCceEEEEEEecC-CCCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEeCCCcc--CHHHHHHHHHHHH
Confidence            4788999999999999999753 233333322333333333334333221   133222222111  2666777788888


Q ss_pred             HHHHHH
Q psy6205          80 DLIEAM   85 (224)
Q Consensus        80 ~~~~~~   85 (224)
                      +.++.+
T Consensus       417 ~~l~~~  422 (425)
T PRK07495        417 ASILEA  422 (425)
T ss_pred             HHHHHH
Confidence            877654

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=95.59  E-value=0.022  Score=51.46  Aligned_cols=78  Identities=18%  Similarity=0.164  Sum_probs=41.2

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDL   81 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~   81 (224)
                      ++||.|++|||.|+++++||+.....  +. ..+..+.......+.+..+..+..|...+...  +++..++.++.|++.
T Consensus       366 ~~~~~v~~vrg~Gl~~~v~~~~~~~~--~~-~~~~~~~~~~~~~Gv~~~~~~~~lr~~Ppl~~--t~~eid~~~~~l~~~  440 (445)
T PRK09221        366 KGLPHVIDIRNIGLVAGIELAPRPGA--PG-ARGYEAFMKCFEKGLLVRYTGDTIALSPPLII--EKAQIDELVDALGDA  440 (445)
T ss_pred             ccCCCEEEEecCceEEEEEEeccccc--cc-chHHHHHHHHHHCCeEEeecCCEEEEECCccC--CHHHHHHHHHHHHHH
Confidence            35788999999999999999853221  11 11122222222223333223333332222111  256667777777776


Q ss_pred             HHH
Q psy6205          82 IEA   84 (224)
Q Consensus        82 ~~~   84 (224)
                      +..
T Consensus       441 l~~  443 (445)
T PRK09221        441 LRA  443 (445)
T ss_pred             HHh
Confidence            653

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=95.56  E-value=0.15  Score=44.98  Aligned_cols=74  Identities=5%  Similarity=0.104  Sum_probs=50.0

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL--ETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~--~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++|.+| .|+-+|++++++++++.+...  ....+.+.++++..++.+.|+.-  ....+.++.++.-+++.+.|++.
T Consensus       234 S~SK~~g~~GlRvG~~v~~~~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  310 (391)
T PRK07309        234 GLSKSHAMTGWRIGLIFAPAEFTAQLIKS--HQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL  310 (391)
T ss_pred             cChhhccCccceeEEEEeCHHHHHHHHHH--HhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHC
Confidence            6899998 689999999999999888643  11233455677777777666542  12344556666667777777653

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=95.55  E-value=0.23  Score=43.86  Aligned_cols=78  Identities=19%  Similarity=0.240  Sum_probs=47.2

Q ss_pred             Cchh--cccccccCCcccccceecH-HHHHhhhcCCcccccCCC-CcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHH
Q psy6205         144 PDIV--TVGKPMGNGHPVAAVITTK-EIAKSFQETGVEYFNTYG-GNPVSCAVANAVMEVLET---ENLREHALDVGNQL  216 (224)
Q Consensus       144 pDi~--~~~K~l~~G~p~~av~~~~-~i~~~~~~~~~~~~~T~~-~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l  216 (224)
                      .|++  +++|.+ .|.+.|++++++ ++.+.+....  ....++ .++...+++..+++.+.+   ++..++++++.+++
T Consensus       215 ~dv~~~s~sK~l-~G~~gg~i~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  291 (402)
T cd00378         215 ADVVTTTTHKTL-RGPRGGLILTRKGELAKKINSAV--FPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKAL  291 (402)
T ss_pred             CcEEEeccccCC-CCCCceEEEeccHHHHHHHHHHh--CccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            4765  678999 456677788877 8888775431  111111 122333333334443322   45778888999999


Q ss_pred             HHhhhhcC
Q psy6205         217 HTPKKENN  224 (224)
Q Consensus       217 ~~~l~~l~  224 (224)
                      .+.|+++|
T Consensus       292 ~~~L~~~g  299 (402)
T cd00378         292 AEALKERG  299 (402)
T ss_pred             HHHHHhCC
Confidence            99887653

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=95.36  E-value=0.02  Score=51.44  Aligned_cols=72  Identities=14%  Similarity=-0.006  Sum_probs=38.8

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDL   81 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~   81 (224)
                      ++||.|+||||+|+|+++|+.....        +..+.......+.+..+..+..+-.++-..  +++..++.++.|++.
T Consensus       351 ~~~~~i~~vRg~Gl~~~ve~~~~~~--------~~~~~~~l~~~Gl~~~~~g~~i~~~Ppl~i--t~~ei~~~~~~l~~~  420 (428)
T PRK07986        351 RDAPMVADVRVLGAIGVVETTRPVN--------MAALQRFFVEQGVWIRPFGKLIYLMPPYII--LPEQLQRLTAAVNRA  420 (428)
T ss_pred             hcCCCEEeEeccceEEEEEeCCccc--------HHHHHHHHHHCCcEEEecCCEEEEeCCCCC--CHHHHHHHHHHHHHH
Confidence            3588999999999999999954211        112222222223333232232222111111  256667777777776


Q ss_pred             HH
Q psy6205          82 IE   83 (224)
Q Consensus        82 ~~   83 (224)
                      ++
T Consensus       421 l~  422 (428)
T PRK07986        421 VQ  422 (428)
T ss_pred             Hh
Confidence            65

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=95.35  E-value=0.36  Score=42.90  Aligned_cols=78  Identities=24%  Similarity=0.296  Sum_probs=47.8

Q ss_pred             Cchh--cccccccCCcccccceec-HHHHHhhhcCCcccccCCCC-cHHHHHH-HHHHHHHHhh--hhHHHHHHHHHHHH
Q psy6205         144 PDIV--TVGKPMGNGHPVAAVITT-KEIAKSFQETGVEYFNTYGG-NPVSCAV-ANAVMEVLET--ENLREHALDVGNQL  216 (224)
Q Consensus       144 pDi~--~~~K~l~~G~p~~av~~~-~~i~~~~~~~~~~~~~T~~~-~p~~~aa-a~a~l~~~~~--~~l~~~~~~~g~~l  216 (224)
                      .|++  +++|+++ |.+.|+++++ +++.+.+....  ..++++. .+..+++ ..+.++.+++  +...++.+++.+++
T Consensus       219 ~di~~~S~~K~l~-g~~gg~i~~~~~~~~~~l~~~~--~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l  295 (416)
T PRK00011        219 ADVVTTTTHKTLR-GPRGGLILTNDEELAKKINSAV--FPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKAL  295 (416)
T ss_pred             CcEEEecCCcCCC-CCCceEEEeCCHHHHHHHHHHh--CccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            4655  6899994 4556778885 68888775431  1112221 2223333 3444454432  45788899999999


Q ss_pred             HHhhhhcC
Q psy6205         217 HTPKKENN  224 (224)
Q Consensus       217 ~~~l~~l~  224 (224)
                      ++.|+++|
T Consensus       296 ~~~L~~~g  303 (416)
T PRK00011        296 AEALAERG  303 (416)
T ss_pred             HHHHHhCC
Confidence            99998753

>PRK02769 histidine decarboxylase; Provisional

Probab=95.27  E-value=0.29  Score=43.41  Aligned_cols=143  Identities=17%  Similarity=0.134  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-----------HHhCCccccccchhhh--hcCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-----------VQVGFGRVGTHWWAFQ--LQGDD  141 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----------v~tG~GrtG~~~~~~~--~~g~~  141 (224)
                      +++|++.++.   .+.+...|++--...+-|.+.|-++..+.+++.           .|.|+ ..-   |.-.  .+...
T Consensus       147 ~~~L~~~i~~---~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~-~~p---~~~~~~~~d~~  219 (380)
T PRK02769        147 YDDLISKIKE---NKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGM-ILP---FVNNPPPFSFA  219 (380)
T ss_pred             HHHHHHHHHh---CCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccce-eec---ccCccccCCcc
Confidence            4566666653   334566777777777789999988888888773           22221 110   0000  11100


Q ss_pred             CCCchhccc--ccccCCcccccceecHHHHHhhhcCCc---ccccCCCCcH--HHHHHHHHHHHHHhhh---hHHHHHHH
Q psy6205         142 IIPDIVTVG--KPMGNGHPVAAVITTKEIAKSFQETGV---EYFNTYGGNP--VSCAVANAVMEVLETE---NLREHALD  211 (224)
Q Consensus       142 v~pDi~~~~--K~l~~G~p~~av~~~~~i~~~~~~~~~---~~~~T~~~~p--~~~aaa~a~l~~~~~~---~l~~~~~~  211 (224)
                      ...|.++++  |-+++-.+.|+++.+++..+.+.....   ..-.|+.|.+  .+.++.-++|+.+.++   +..+++.+
T Consensus       220 ~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~  299 (380)
T PRK02769        220 DGIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLD  299 (380)
T ss_pred             CCCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            136766653  544333889999999988776532210   1113445544  4566777888888654   45677889


Q ss_pred             HHHHHHHhhhhcC
Q psy6205         212 VGNQLHTPKKENN  224 (224)
Q Consensus       212 ~g~~l~~~l~~l~  224 (224)
                      +.++|.++|++.|
T Consensus       300 la~~l~~~L~~~g  312 (380)
T PRK02769        300 MAQYAVDRLQANG  312 (380)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999998653

>PRK06460 hypothetical protein; Provisional

Probab=95.26  E-value=0.18  Score=44.47  Aligned_cols=123  Identities=11%  Similarity=0.033  Sum_probs=73.5

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchh--cccccccC--Ccccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN--GHPVA  160 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~--G~p~~  160 (224)
                      .++.+|++|......|.+.+.++..+.+++.     |---++ ++   +......  ...|++  +++|.++|  +.-.|
T Consensus       129 ~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~-~~---~~~~~l~--~~~divv~S~sK~l~G~~~~~~G  202 (376)
T PRK06460        129 KRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFS-TP---INQKPLE--LGADIVVHSASKFLAGHNDVIAG  202 (376)
T ss_pred             CCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcC-cc---ccCChhh--cCCCEEEeecceeccCCCCceEE
Confidence            3567899998888888888887776666665     100011 11   1111111  225766  58999974  23467


Q ss_pred             cceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         161 AVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       161 av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      .+++++++++.+...  ....+...+|..+..++..++.++.  ..+++.+..+++.+.|++
T Consensus       203 ~~~~~~~l~~~l~~~--~~~~g~~~~~~~a~~~l~~~~~l~~--r~~~~~~n~~~l~~~L~~  260 (376)
T PRK06460        203 LAAGYGKLLNVIDQM--RRTLGTSLDPHAAYLTLRGIKTLKI--RMDVINRNAEQIAEFLEG  260 (376)
T ss_pred             EEecCHHHHHHHHHH--HHhcCCCCCHHHHHHHHhchhhHHH--HHHHHHHHHHHHHHHHHc
Confidence            788899998887643  1123444667666666666666642  355556666666666653

>PRK06767 methionine gamma-lyase; Provisional

Probab=95.26  E-value=0.068  Score=47.33  Aligned_cols=123  Identities=14%  Similarity=0.045  Sum_probs=70.4

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchhc--ccccccC-Cccc-cc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGN-GHPV-AA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~-G~p~-~a  161 (224)
                      +..+|++|-.....|.+.+.++..+.+++.     |=.-|+ ++. .  .....  .-.|+++  ++|.++| |-++ |+
T Consensus       146 ~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a-~~~-~--~~pl~--~g~Div~~S~sK~l~g~g~~~gG~  219 (386)
T PRK06767        146 NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFC-SPY-L--QRPLE--LGCDAVVHSATKYIGGHGDVVAGV  219 (386)
T ss_pred             CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCc-ccc-c--CCchh--cCCcEEEecCcceecCCCCceeEE
Confidence            567899998777788877766666666655     111121 111 0  01111  2247764  5699987 5665 77


Q ss_pred             ceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         162 VITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       162 v~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ++++++..+.+.........+ ..+|..+++++..|+.+.  ...++.+++.+++.+.|++
T Consensus       220 v~~~~~~i~~~~~~~~~~~g~-~~~~~~a~l~~~~L~tl~--~r~~~~~~~a~~la~~L~~  277 (386)
T PRK06767        220 TICKTRALAEKIRPMRKDIGG-IMAPFDAWLLLRGLKTLA--VRMDRHCDNAEKIVSFLKN  277 (386)
T ss_pred             EEeChHHHHHHHHHHHHHhCC-CCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHHc
Confidence            888888776543221111111 236777777666666553  2456666777777777764

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=95.23  E-value=0.068  Score=46.14  Aligned_cols=72  Identities=17%  Similarity=0.251  Sum_probs=53.1

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|||.+| .|+-+|.+++++++.+.+...    ..++..++++.+++.++|+... .+...+++++.-+++.+.|+++
T Consensus       189 SfSK~~gl~GlRiG~~v~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~  262 (330)
T PRK05664        189 SFGKFFGLAGARLGFVLAEPALLRALAEL----LGPWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRH  262 (330)
T ss_pred             eccccccCCCcceEEEEeCHHHHHHHHHh----cCCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            7999999 799999999999999888643    2345567777777777776432 2346667777777788777764

>PLN02651 cysteine desulfurase

Probab=95.13  E-value=0.14  Score=44.67  Aligned_cols=123  Identities=12%  Similarity=0.029  Sum_probs=79.3

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhcc--cccccCCcccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTV--GKPMGNGHPVA  160 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~--~K~l~~G~p~~  160 (224)
                      +...+++..+....|.+.|.++..+.+++.        +|. +|..   .+-.+.+    .+|++++  -| ++|...+|
T Consensus       138 ~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~-~g~~---~~~~~~~----~~D~~~~s~hK-~~gp~G~g  208 (364)
T PLN02651        138 DTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQA-VGKI---PVDVDDL----GVDLMSISGHK-IYGPKGVG  208 (364)
T ss_pred             CcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchh-hCCc---ccCcccC----CCCEEEechhh-hCCCCceE
Confidence            467888888888889998888777777776        333 2211   1122223    3698865  46 64335578


Q ss_pred             cceecHHHHHhhhcCCc----cc-ccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhh
Q psy6205         161 AVITTKEIAKSFQETGV----EY-FNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       161 av~~~~~i~~~~~~~~~----~~-~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ++.++++..+.+.....    .. ....+-|..++.+..++|+.+.+  +++.++.+++.++|.++|++
T Consensus       209 ~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~  277 (364)
T PLN02651        209 ALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRA  277 (364)
T ss_pred             EEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            89999876655432200    00 12234456678888888888854  45677888899999888864

>PRK07568 aspartate aminotransferase; Provisional

Probab=95.11  E-value=0.25  Score=43.47  Aligned_cols=72  Identities=17%  Similarity=0.171  Sum_probs=46.0

Q ss_pred             ccccccc-CCcccccceec-HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhh
Q psy6205         148 TVGKPMG-NGHPVAAVITT-KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~-~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ++||.++ .|+.+|.+++. +++.+.+....   ..+++.++++..++.+.|+..+  -+.+.+++++.-+.+.+.|++
T Consensus       232 S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~---~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  307 (397)
T PRK07568        232 SVSKRYSACGARIGCLISKNKELIAAAMKLC---QARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNK  307 (397)
T ss_pred             cchhhccCCCcceEEEecCCHHHHHHHHHHh---hccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7899998 48999999984 78887664321   1245566666666666664321  123455566666677777764

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=95.08  E-value=0.2  Score=44.13  Aligned_cols=124  Identities=17%  Similarity=0.163  Sum_probs=71.4

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCch---hccccccc-CCccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDI---VTVGKPMG-NGHPV  159 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi---~~~~K~l~-~G~p~  159 (224)
                      ++.+|++.....-.|.+.+..++.+.++..       +...|...+. ...  ...  -.+.+   -+|+|.+| .|+-+
T Consensus       175 ~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~~~vi~DeaY~~~~~~~~-~~~--~~~--~~~~viv~~SfSK~~glaGlRi  249 (380)
T PLN03026        175 KPKLLFLTSPNNPDGSIISDDDLLKILELPILVVLDEAYIEFSTQES-RMK--WVK--KYDNLIVLRTFSKRAGLAGLRV  249 (380)
T ss_pred             CCcEEEEeCCCCCCCCCCCHHHHHHHHhcCCEEEEECcchhhcCCcc-hHH--HHH--hCCCEEEEecchHhhcCccccc
Confidence            456666665555578776665554444321       2222211111 101  111  11232   27999998 78999


Q ss_pred             ccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         160 AAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       160 ~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |.+++++++.+.+....    ..+.-+.++..++.++|+--+ -++..+.+++.-+++.+.|+++
T Consensus       250 Gy~~~~~~~i~~l~~~~----~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~  310 (380)
T PLN03026        250 GYGAFPLSIIEYLWRAK----QPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEV  310 (380)
T ss_pred             eeeecCHHHHHHHHHhc----CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999998876431    235567777777777774211 1234555666667777777654

>PRK08175 aminotransferase; Validated

Probab=95.06  E-value=0.3  Score=43.15  Aligned_cols=75  Identities=16%  Similarity=0.202  Sum_probs=47.0

Q ss_pred             hccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         147 VTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       147 ~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      -++||.+| .|+=+|.+++++++++.+...  .....++.++.+..++.+.|+-.++  +.+.+++++.-+++.+.|+++
T Consensus       233 ~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~  310 (395)
T PRK08175        233 FTLSKSYNMAGWRIGFMVGNPELVSALARI--KSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEA  310 (395)
T ss_pred             eeccccccCcchhheeeeCCHHHHHHHHHH--HhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            36899997 578889999999999987642  1123445555566666666643211  234455556666676666553

>PRK07503 methionine gamma-lyase; Provisional

Probab=95.03  E-value=0.13  Score=45.92  Aligned_cols=121  Identities=14%  Similarity=0.110  Sum_probs=72.4

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchh--cccccccC-C-ccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN-G-HPVAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~-G-~p~~a  161 (224)
                      ++.+|++|......|.+.+-++..+.+++.     |-.-+ .++.   .....+  .-.|++  .++|.+++ | .-.|+
T Consensus       150 ~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~-a~~~---~~~~l~--~g~Di~v~S~tK~l~g~gd~~gG~  223 (403)
T PRK07503        150 KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTY-CTPY---LQRPLE--LGADLVVHSATKYLGGHGDITAGL  223 (403)
T ss_pred             cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCC-cccc---cCCchh--hCCCEEEccccccccCCCceeEEE
Confidence            567899987766678777766666666655     11101 1111   011112  336766  47899986 4 45677


Q ss_pred             ceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q psy6205         162 VITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLH  217 (224)
Q Consensus       162 v~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~  217 (224)
                      ++.++++.+.+..........+..+|+.++.++..|+.+..  +...+++..+.++|.
T Consensus       224 v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~tl~~r~~~~~~na~~~a~~L~  281 (403)
T PRK07503        224 VVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTLALRMDRHCASAQAVAEWLA  281 (403)
T ss_pred             EEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH
Confidence            88888888877532111123467789999999888888742  334455555555554

>PRK06234 methionine gamma-lyase; Provisional

Probab=95.03  E-value=0.13  Score=45.86  Aligned_cols=123  Identities=11%  Similarity=0.047  Sum_probs=72.7

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCchhc--ccccccC-Cccc-
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGN-GHPV-  159 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~-G~p~-  159 (224)
                      +..+|++|......|.+.+.+++.+.+++.       |-.-+ .++. .  ....+  ...|+++  ++|.+++ |..+ 
T Consensus       149 ~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~-~~~~-~--~~~l~--~g~Divv~S~sK~l~g~g~~~g  222 (400)
T PRK06234        149 NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTF-CTPY-I--QRPLQ--LGADVVVHSATKYLNGHGDVIA  222 (400)
T ss_pred             CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCC-Cchh-c--CCchh--hCCcEEEeeccccccCCCCcee
Confidence            467899997777788888766676666662       10001 0111 0  01111  2367764  6899986 5444 


Q ss_pred             ccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         160 AAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       160 ~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      |++++++++.+.+.........+...+|..++.++..|+-+..  ..++..++.+++.+.|+
T Consensus       223 G~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl~~--r~~~~~~na~~~a~~L~  282 (400)
T PRK06234        223 GFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTLQI--RMEKHCKNAMKVAKFLE  282 (400)
T ss_pred             EEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcHHH--HHHHHHHHHHHHHHHHH
Confidence            7788999988877532212224567889999988888876642  23333444444444444

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=94.97  E-value=0.037  Score=49.48  Aligned_cols=74  Identities=16%  Similarity=0.180  Sum_probs=40.5

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCC-CccccCCCCCCCCCChhHHHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPC-PDVYRGKYPADKYPDEDLGVKYAQDVQDL   81 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~-P~~yr~~~~~~~~~~~~~~~~~~~~l~~~   81 (224)
                      +|+.|++|||+|+|+|+||+.+..      ..+..+.......+.+..+. ++..|...+...  +++..++.++.+++.
T Consensus       329 ~~~~i~~vrg~Gl~~~i~~~~~~~------~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl~i--t~eeid~~l~~l~~~  400 (408)
T PRK04612        329 EFGVFAQVRGRGLMLGAVLAPAHA------GQAGAILDLAAEHGLLLLQAGPDVLRFVPALNL--TDAELADGLARLRLA  400 (408)
T ss_pred             hCCCeeeeeccceEEEEEecCchh------hHHHHHHHHHHHCCeEEeeCCCCEEEEcCCccC--CHHHHHHHHHHHHHH
Confidence            478899999999999999974211      11112222222233333332 233333222111  256667778888777


Q ss_pred             HHH
Q psy6205          82 IEA   84 (224)
Q Consensus        82 ~~~   84 (224)
                      +..
T Consensus       401 l~~  403 (408)
T PRK04612        401 LAD  403 (408)
T ss_pred             HHH
Confidence            764

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=94.95  E-value=0.12  Score=45.75  Aligned_cols=120  Identities=13%  Similarity=0.064  Sum_probs=72.8

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchhc--ccccccC-C-ccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGN-G-HPVAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~-G-~p~~a  161 (224)
                      +..+|++|......|.+.+-++..+.+++.     |-.-+ -+|. .+--..    .-.|+++  +.|.++| + .-.|+
T Consensus       135 ~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~-a~g~-~~~pl~----~gaDivv~S~tK~l~G~~d~~gG~  208 (377)
T TIGR01324       135 NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTW-AAGL-LFKPLE----HGVDISIQAGTKYLVGHSDIMIGT  208 (377)
T ss_pred             CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC-cccc-ccCccc----cCceEEEecCceeccCCCCceEEE
Confidence            567899998877777777766777766665     11101 1221 111112    3378876  4899986 2 55677


Q ss_pred             ceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-h-hhHHHHHHHHHHHHHH
Q psy6205         162 VITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-T-ENLREHALDVGNQLHT  218 (224)
Q Consensus       162 v~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~-~~l~~~~~~~g~~l~~  218 (224)
                      ++++++..+.+...  ...+....+|..+...+..|+.+. + +...+++.++.++|.+
T Consensus       209 v~~~~~~~~~l~~~--~~~~G~~l~p~~a~~~~rgl~tl~~R~~~~~~~a~~la~~L~~  265 (377)
T TIGR01324       209 VVANARTWDQLREH--SYLMGQMVDADDAYTTLRGLRTLGVRLKQHQESSLAIAKWLSE  265 (377)
T ss_pred             EEeCHHHHHHHHHH--HHHhCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            88888877766532  223345567888877877777763 2 3445555555665554

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=94.95  E-value=0.028  Score=51.07  Aligned_cols=73  Identities=18%  Similarity=0.243  Sum_probs=39.8

Q ss_pred             CCC-cceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCC---CccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           3 RYP-LIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPC---PDVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         3 ~~p-~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~---P~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      +|| .|++|||.|+|+|+|++.+..        +..+....+..+++..+.   .+..|...+...  +++..++.++.|
T Consensus       376 ~~~~~i~~VrG~Gl~~giel~~~~~--------~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~--t~~~id~~l~~l  445 (459)
T PRK11522        376 EYPDLVQEARGKGMLMAIEFVDNEI--------GYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTL--TIEQCEQVLKAA  445 (459)
T ss_pred             hCCCceeeEEeceeEEEEEecCchH--------HHHHHHHHHHCCeEEEecCCCCCEEEEECCccC--CHHHHHHHHHHH
Confidence            478 789999999999999975311        112222222223332221   122222111111  256677777888


Q ss_pred             HHHHHHH
Q psy6205          79 QDLIEAM   85 (224)
Q Consensus        79 ~~~~~~~   85 (224)
                      ++.++.+
T Consensus       446 ~~~l~~~  452 (459)
T PRK11522        446 RKALAAM  452 (459)
T ss_pred             HHHHHHH
Confidence            7777654

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=94.88  E-value=0.35  Score=42.00  Aligned_cols=122  Identities=17%  Similarity=0.218  Sum_probs=67.2

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchh---ccccccc-CCcc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIV---TVGKPMG-NGHP  158 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~---~~~K~l~-~G~p  158 (224)
                      ++.++++...+.-.|...+.++..+.+++.        +...|.  +....  ....  -.+.++   +|+|.++ .|+-
T Consensus       148 ~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~--~~~~~--~~~~--~~~~vi~~~S~SK~~~~~GlR  221 (351)
T PRK14807        148 QPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFY--GNTIV--DVIN--EFENLIVLRTLSKAFGLAGLR  221 (351)
T ss_pred             CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhc--ccchH--HHhh--hCCCEEEEecchHhcccchhc
Confidence            566666665455578777766655555442        322231  21010  0011  112333   6899998 7999


Q ss_pred             cccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         159 VAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       159 ~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +|.+++++++.+.+....    ..+.-++++..++.+.|+--.-++..+++++.-+++.+.|++
T Consensus       222 iG~~v~~~~~~~~~~~~~----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~  281 (351)
T PRK14807        222 VGYAVANENILKYLNLVK----SPYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSK  281 (351)
T ss_pred             eeeeecCHHHHHHHHHcc----CCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999886431    124446677666666664211122333444444556565543

>PLN02242 methionine gamma-lyase

Probab=94.84  E-value=0.13  Score=46.11  Aligned_cols=120  Identities=14%  Similarity=0.066  Sum_probs=67.6

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchh--cccccccC-Ccc-
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN-GHP-  158 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~-G~p-  158 (224)
                      +..+|++|......|.+.+-+++.+.+++.        +++.+      .+....+|    .||+  +++|.+++ |.. 
T Consensus       163 ~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~------~~~~~~~g----~divv~S~SK~l~g~g~~~  232 (418)
T PLN02242        163 KTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPM------VLSPARLG----ADVVVHSISKFISGGADII  232 (418)
T ss_pred             CCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCcc------CCCHHHcC----CcEEEEeCccccCCCCCce
Confidence            478999998777788887766666666665        22111      01111223    4665  68999986 456 


Q ss_pred             cccceecHHHHHhhhcCCcccccCCCC---cHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         159 VAAVITTKEIAKSFQETGVEYFNTYGG---NPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       159 ~~av~~~~~i~~~~~~~~~~~~~T~~~---~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .|++++++++++.+.... .....+.|   .|..++...-.++.+  +...++.+++..++.+.|++.
T Consensus       233 gG~iv~~~~li~~l~~~~-~~~~~~~g~~~~~~~A~l~~~~l~tl--~~r~~~~~~~a~~la~~L~~~  297 (418)
T PLN02242        233 AGAVCGPAELVNSMMDLH-HGALMLLGPTMNPKVAFELSERLPHL--SLRMKEHCRRAMEYAKRMKEL  297 (418)
T ss_pred             EEEEEcCHHHHHHHHHHh-hhhhhccCCCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHHHhC
Confidence            477888999888876431 11011222   233333333222222  223456666777777777654

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=94.78  E-value=0.21  Score=43.75  Aligned_cols=121  Identities=16%  Similarity=0.140  Sum_probs=73.8

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCcccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPVA  160 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~~  160 (224)
                      ++..+++.-+....|.+.+.++..+.+++.        +|+ +|..     -.....  ..+|+++++  | +.|-..+|
T Consensus       136 ~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~-~g~~-----~~~~~~--~~~D~~~~s~~K-~~gp~G~g  206 (379)
T TIGR03402       136 DTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQA-VGKI-----PIDLKE--MNIDMLSLSGHK-LHGPKGVG  206 (379)
T ss_pred             CcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECccc-cccc-----ccCccc--CCCCEEEEcHHH-cCCCCceE
Confidence            457788887888889988887777777766        433 3211     111111  458999999  9 65434567


Q ss_pred             cceecHHHHHhhhcC---Cc-cc-ccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhh
Q psy6205         161 AVITTKEIAKSFQET---GV-EY-FNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       161 av~~~~~i~~~~~~~---~~-~~-~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ++..+++..  +.+.   +. .. ....+-|..+..+..++++++.+  ++..++.+++.++++++|++
T Consensus       207 ~l~v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~  273 (379)
T TIGR03402       207 ALYIRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLA  273 (379)
T ss_pred             EEEECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            787776542  2111   00 00 11233456667777778887754  34556778888888888764

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=94.78  E-value=0.046  Score=49.47  Aligned_cols=81  Identities=25%  Similarity=0.309  Sum_probs=47.0

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCCC---ccccCCCCCCCCCChhHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCP---DVYRGKYPADKYPDEDLGVKYAQDVQ   79 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P---~~yr~~~~~~~~~~~~~~~~~~~~l~   79 (224)
                      +||.+++|||.|+|++++++.+..+..|....+..+.......++...+..   +..|-.++...  +++..++.++.|+
T Consensus       361 ~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~--t~~~id~~l~~l~  438 (451)
T PRK06918        361 KYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVI--TDEQLEEGLTIIE  438 (451)
T ss_pred             hCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCcc--CHHHHHHHHHHHH
Confidence            478889999999999999986655544433333344433333444444431   33332222111  2566667777777


Q ss_pred             HHHHHH
Q psy6205          80 DLIEAM   85 (224)
Q Consensus        80 ~~~~~~   85 (224)
                      +.++.+
T Consensus       439 ~~l~~~  444 (451)
T PRK06918        439 ESLQAC  444 (451)
T ss_pred             HHHHHH
Confidence            777654

>PRK09082 methionine aminotransferase; Validated

Probab=94.76  E-value=0.29  Score=43.08  Aligned_cols=74  Identities=12%  Similarity=0.193  Sum_probs=49.0

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|||.+| .|+-+|++++++++++.+...  .....++.++++..++.+.|+..++  +.+.+.+++.-+++.+.|++.
T Consensus       233 S~SK~~~~~G~RiG~iv~~~~l~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~  309 (386)
T PRK09082        233 SFGKTYHVTGWKVGYCVAPAALSAEFRKV--HQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANS  309 (386)
T ss_pred             echhhccchhhhhhhhhCCHHHHHHHHHH--HhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            6899997 689999999999999887653  1224556677776666655542111  124445566777777777653

>PLN02409 serine--glyoxylate aminotransaminase

Probab=94.76  E-value=0.37  Score=42.80  Aligned_cols=139  Identities=10%  Similarity=0.057  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHccCC-CCceEEEEccccCCCCcccCCHHHHHH--HHHH--------HHhCCccccccchhhhhcCCCCC
Q psy6205          75 AQDVQDLIEAMGRNG-KRPCAFFAESLQSCGGQIIPPANYLRE--VYKH--------VQVGFGRVGTHWWAFQLQGDDII  143 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~-~~iaavi~Epv~~~~G~~~~~~~~l~~--~~~~--------v~tG~GrtG~~~~~~~~~g~~v~  143 (224)
                      .+++++.+..   .. .++.+|++--.....|.+.+.++.-+.  +++.        ++. +|   ..-...+.    ..
T Consensus       123 ~~~l~~~l~~---~~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s-~g---~~~id~~~----~~  191 (401)
T PLN02409        123 LDILKSKLRQ---DTNHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSS-IG---ALDFRMDE----WG  191 (401)
T ss_pred             HHHHHHHHhh---CcCCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccc-cC---Cccccccc----cC
Confidence            4556655542   11 256677776555567888887777666  5544        332 22   10011112    23


Q ss_pred             Cchhc--ccccccCCcccccceecHHHHHhhhcCC--ccc-----------cc---CCCCcHHHHHHHHHHHHHHhh---
Q psy6205         144 PDIVT--VGKPMGNGHPVAAVITTKEIAKSFQETG--VEY-----------FN---TYGGNPVSCAVANAVMEVLET---  202 (224)
Q Consensus       144 pDi~~--~~K~l~~G~p~~av~~~~~i~~~~~~~~--~~~-----------~~---T~~~~p~~~aaa~a~l~~~~~---  202 (224)
                      .|+++  ..|.+++..-+|.++.++++.+.+....  ..+           ..   .++.|-....+..++|+.+.+   
T Consensus       192 ~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~  271 (401)
T PLN02409        192 VDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGL  271 (401)
T ss_pred             ccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhH
Confidence            57664  5899976434788999999888765321  000           11   234455677888888888754   


Q ss_pred             hhHHHHHHHHHHHHHHhhhhcC
Q psy6205         203 ENLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       203 ~~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      +++.++.+++.+++++.|+++|
T Consensus       272 e~i~~~~~~l~~~l~~~L~~~g  293 (401)
T PLN02409        272 ENVIARHARLGEATRLAVEAWG  293 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC
Confidence            4678889999999999988764

>PRK08960 hypothetical protein; Provisional

Probab=94.70  E-value=0.32  Score=42.78  Aligned_cols=79  Identities=14%  Similarity=0.079  Sum_probs=49.1

Q ss_pred             CCCchhc---cccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH-Hhh--hhHHHHHHHHHH
Q psy6205         142 IIPDIVT---VGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV-LET--ENLREHALDVGN  214 (224)
Q Consensus       142 v~pDi~~---~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~-~~~--~~l~~~~~~~g~  214 (224)
                      +.+++++   ++|.+| .|+-+|.+++++++.+.+...  ....+.+.+.++-.++.+.|+- .++  ..+.+.+++.-+
T Consensus       222 ~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~--~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~  299 (387)
T PRK08960        222 VDDDAFVLNSFSKYFGMTGWRLGWLVAPPAAVPELEKL--AQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRD  299 (387)
T ss_pred             ccCCEEEEeecccccCCcccEEEEEEcCHHHHHHHHHH--HhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHH
Confidence            4466654   899997 789999999999998877542  1223445567776667666642 110  123334445555


Q ss_pred             HHHHhhhh
Q psy6205         215 QLHTPKKE  222 (224)
Q Consensus       215 ~l~~~l~~  222 (224)
                      .+.+.|++
T Consensus       300 ~l~~~L~~  307 (387)
T PRK08960        300 FLLPALRE  307 (387)
T ss_pred             HHHHHHHh
Confidence            56666654

>PRK05942 aspartate aminotransferase; Provisional

Probab=94.58  E-value=0.32  Score=42.93  Aligned_cols=76  Identities=16%  Similarity=0.165  Sum_probs=50.4

Q ss_pred             hhccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhh
Q psy6205         146 IVTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       146 i~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +-+|||.+| .|+-+|.+++++++.+.+...  .....++.+.++..++.++|+..++  +...+++++.-+++.+.|++
T Consensus       238 ~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  315 (394)
T PRK05942        238 FHTLSKTYNMAGWRVGFVVGNRHIIQGLRTL--KTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGE  315 (394)
T ss_pred             EecchhccCChhhheeeeecCHHHHHHHHHH--HhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999997 678899999999999988643  1112344555666666677754322  24556666667777777765


Q ss_pred             c
Q psy6205         223 N  223 (224)
Q Consensus       223 l  223 (224)
                      .
T Consensus       316 ~  316 (394)
T PRK05942        316 L  316 (394)
T ss_pred             C
Confidence            3

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=94.44  E-value=0.35  Score=42.73  Aligned_cols=124  Identities=10%  Similarity=0.029  Sum_probs=74.7

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCcccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPVA  160 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~~  160 (224)
                      +..+|++.-+....|.+.+.++..+.+++.        ++. +|..     ......  ..+|+++++  |.+|- .-+|
T Consensus       160 ~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~-~g~~-----~~~~~~--~~~d~~~~s~~K~~gp-~G~G  230 (401)
T PRK10874        160 RTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQG-AVHF-----PADVQA--LDIDFYAFSGHKLYGP-TGIG  230 (401)
T ss_pred             CcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcc-cccc-----cCCchh--cCCCEEEEecccccCC-CccE
Confidence            455677766777788888877777777776        321 2211     111111  348888776  96541 1247


Q ss_pred             cceecHHHHHhhhcCC---cc---------------cc-cCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHH
Q psy6205         161 AVITTKEIAKSFQETG---VE---------------YF-NTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHT  218 (224)
Q Consensus       161 av~~~~~i~~~~~~~~---~~---------------~~-~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~  218 (224)
                      .+.+++++.+.+....   ..               .. .+-+-|..+.++..++++.+++   ++..++.+++.+++.+
T Consensus       231 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~  310 (401)
T PRK10874        231 VLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAED  310 (401)
T ss_pred             EEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            7889999887664210   00               00 0112344566667777777654   3567788888899998


Q ss_pred             hhhhc
Q psy6205         219 PKKEN  223 (224)
Q Consensus       219 ~l~~l  223 (224)
                      .|+++
T Consensus       311 ~l~~~  315 (401)
T PRK10874        311 ALAKL  315 (401)
T ss_pred             HHhcC
Confidence            88764

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=94.43  E-value=0.051  Score=48.73  Aligned_cols=21  Identities=33%  Similarity=0.635  Sum_probs=19.0

Q ss_pred             CCCcceeeccCCceeEEEEee
Q psy6205           3 RYPLIGDVRGIGLFVGVELVT   23 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~   23 (224)
                      +||.+.++||.|+|.++||..
T Consensus       340 ~~p~v~~vrG~Gl~~~ie~~~  360 (421)
T PRK09792        340 SVPAIAAVRGLGSMIAAEFND  360 (421)
T ss_pred             hCCCcceecccceEEEEEecC
Confidence            489899999999999999974

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=94.43  E-value=0.17  Score=45.03  Aligned_cols=123  Identities=14%  Similarity=0.040  Sum_probs=68.4

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH----HHhCCccccccchhhhhcCCCCCCchhc--ccccccC-Ccccc-c
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH----VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGN-GHPVA-A  161 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~-G~p~~-a  161 (224)
                      ++..+|++|-.....|.+.+-++..+.+++.    |.=.--.++. +.....    .-.|+++  ++|.++| |..+| +
T Consensus       149 ~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~-~~~~~~----~gaDivv~S~sK~l~g~g~~~GG~  223 (398)
T PRK07504        149 PNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPL-FQKPLE----LGAHIVVYSATKHIDGQGRCLGGV  223 (398)
T ss_pred             cCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccc-cCCchh----hCCCEEEeeccccccCCccceEEE
Confidence            3567899998777778777755555555554    1000001111 111112    2367765  6899976 66775 5


Q ss_pred             ceecHHHHHh-hhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         162 VITTKEIAKS-FQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       162 v~~~~~i~~~-~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      ++++++..+. +...  ........+|..++.++..|+.+..  ..++-.++.+++.+.|+
T Consensus       224 vv~~~~~i~~~~~~~--~~~~g~~~s~~~A~~~l~~L~tl~~--R~~~~~~na~~la~~L~  280 (398)
T PRK07504        224 VLSDKAWIEEHLQDY--FRHTGPSLSPFNAWTLLKGLETLPV--RVRQQTESAAAIADFLA  280 (398)
T ss_pred             EEeCcHHHHHHHHHH--HHHhCCCCCHHHHHHHHhccchHHH--HHHHHHHHHHHHHHHHH
Confidence            6677665542 3221  1112345789999999999988843  23333344444444444

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=94.41  E-value=0.55  Score=42.45  Aligned_cols=147  Identities=16%  Similarity=0.103  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-HHhCCc------c-ccccchhh----hhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-VQVGFG------R-VGTHWWAF----QLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-v~tG~G------r-tG~~~~~~----~~~g~~v  142 (224)
                      +++|++.+..  .+...++.|.+|=.....|-.+.+...+++++++ -..|.-      | .|..+|--    .+.+..+
T Consensus       156 ~~~Le~aI~~--~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i  233 (450)
T TIGR02618       156 LKKLQKLIDE--VGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSI  233 (450)
T ss_pred             HHHHHHHhcc--ccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCH
Confidence            5667766652  2334566666665444433356777888999888 111110      0 00000100    0111001


Q ss_pred             ---------CCchhcccccccC-Cccccccee--cHHHHHhhhcCCcc--cccCCCCcHH-HHHHHHHHHHHHhhhhHHH
Q psy6205         143 ---------IPDIVTVGKPMGN-GHPVAAVIT--TKEIAKSFQETGVE--YFNTYGGNPV-SCAVANAVMEVLETENLRE  207 (224)
Q Consensus       143 ---------~pDi~~~~K~l~~-G~p~~av~~--~~~i~~~~~~~~~~--~~~T~~~~p~-~~aaa~a~l~~~~~~~l~~  207 (224)
                               --|. +++|+.-. +.|+|.+++  ++++++.....-..  -+-||++=.. .++|..-.|+...++...+
T Consensus       234 ~ei~~e~~~~aD~-~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~  312 (450)
T TIGR02618       234 AEILKEMMSYADG-CTMSGKKDCLVNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIE  312 (450)
T ss_pred             HHHHHHHhccCcE-EEEeeccCCCCCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHH
Confidence                     2355 67777754 468888887  78888776543111  2357777443 4444444566665556666


Q ss_pred             HHHHHHHHHHHhhhhcC
Q psy6205         208 HALDVGNQLHTPKKENN  224 (224)
Q Consensus       208 ~~~~~g~~l~~~l~~l~  224 (224)
                      +.....++|.++|++.|
T Consensus       313 ~r~~~a~~La~~L~~~G  329 (450)
T TIGR02618       313 HRVKQVRYLGDKLKAAG  329 (450)
T ss_pred             HHHHHHHHHHHHHHHCC
Confidence            66666777777777654

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=94.33  E-value=0.48  Score=41.46  Aligned_cols=72  Identities=14%  Similarity=0.160  Sum_probs=47.9

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH--h-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL--E-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~--~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|||.+| .|+-+|.+++++++.+.+...    ..+++.+.++..++.+.|+-=  + -.+..+++++.-+++.+.|+++
T Consensus       217 SfSK~~gl~GlRvGy~v~~~~l~~~l~~~----~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  292 (364)
T PRK04781        217 TLSKAHALAAARIGSLIANAELIAVLRRC----QAPYPVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQL  292 (364)
T ss_pred             cChhhcccccceeeeeeCCHHHHHHHHhc----cCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            7999999 799999999999999988643    235666777777776666431  1 1122334455556666666654

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=94.22  E-value=1  Score=40.70  Aligned_cols=146  Identities=14%  Similarity=0.084  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-HHhCCc--cccccch--hh-------hhcCCC-
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-VQVGFG--RVGTHWW--AF-------QLQGDD-  141 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-v~tG~G--rtG~~~~--~~-------~~~g~~-  141 (224)
                      +++|++.|+..  +++++..++++-.-...|-.+.|.+.+++++++ -..|.-  --|.-+|  ++       ...+.. 
T Consensus       169 l~~le~~I~~~--g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si  246 (467)
T TIGR02617       169 LEGLERGIEEV--GPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSI  246 (467)
T ss_pred             HHHHHHHHhhc--CCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCH
Confidence            56777777632  346788888776655555567788999999999 111110  0011011  00       011100 


Q ss_pred             --------CCCchh--cccccccCCccccccee-cHH----HHHhhhcCC--cccccCCCCcHHHHHHHHH-HHHHHhhh
Q psy6205         142 --------IIPDIV--TVGKPMGNGHPVAAVIT-TKE----IAKSFQETG--VEYFNTYGGNPVSCAVANA-VMEVLETE  203 (224)
Q Consensus       142 --------v~pDi~--~~~K~l~~G~p~~av~~-~~~----i~~~~~~~~--~~~~~T~~~~p~~~aaa~a-~l~~~~~~  203 (224)
                              -.-|.+  +++|+++  .|+|.+++ +++    +++......  ...+-||+|=.----.|+| .|+...++
T Consensus       247 ~eI~rE~~~~aDsvt~slsKglg--ApvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~  324 (467)
T TIGR02617       247 EQITRETYKYADMLAMSAKKDAM--VPMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNL  324 (467)
T ss_pred             HHHHHHhhccCCEEEEEcCCCCC--CcccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccH
Confidence                    124544  5788765  45444444 433    333322211  1234788886654444444 46655555


Q ss_pred             hHHHHHHHHHHHHHHhhhhcC
Q psy6205         204 NLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       204 ~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      +++..=-..-+||.++|++.|
T Consensus       325 ~yl~~ri~qv~yl~~~L~~~G  345 (467)
T TIGR02617       325 DWLAYRINQVQYLVNGLEEIG  345 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC
Confidence            544444444567777777654

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=94.20  E-value=0.31  Score=42.76  Aligned_cols=76  Identities=11%  Similarity=0.078  Sum_probs=47.1

Q ss_pred             hhccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhh
Q psy6205         146 IVTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       146 i~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +-+|||.+| .|+=+|.+++++++.+.+.... . ..+.+.+++...++.+.|+..++  +++.+++++.-+++.+.|++
T Consensus       234 ~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~-~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  311 (385)
T PRK09276        234 FHSLSKTYNMTGWRIGFAVGNADLIAGLGKVK-S-NVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRK  311 (385)
T ss_pred             EecchhhcCCcchhheeeeCCHHHHHHHHHHH-h-hccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            448999997 5888899999999998876431 1 12223345555555555542211  23455566666777777765


Q ss_pred             c
Q psy6205         223 N  223 (224)
Q Consensus       223 l  223 (224)
                      +
T Consensus       312 ~  312 (385)
T PRK09276        312 L  312 (385)
T ss_pred             C
Confidence            3

>PRK08912 hypothetical protein; Provisional

Probab=94.18  E-value=0.1  Score=45.95  Aligned_cols=74  Identities=16%  Similarity=0.201  Sum_probs=50.4

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++||.+| .|+-+|.+++++++.+.+...  ....+++.++...+++.+.|...++  +++.+++++.-+++.+.|++.
T Consensus       229 S~SK~~g~~GlRiG~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  305 (387)
T PRK08912        229 SAGKIFSLTGWKVGFVCAAPPLLRVLAKA--HQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRI  305 (387)
T ss_pred             echhhccCcCceeEEEecCHHHHHHHHHH--HhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            6899999 899999999999999887643  2223466666666666665532111  245666777777787777654

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=94.16  E-value=0.11  Score=45.71  Aligned_cols=72  Identities=19%  Similarity=0.195  Sum_probs=55.9

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ||||+.| .|+=+|.+++++++.+.+...    ...|+-|-++.+++.++|+--+ -+...+++.+.-++|.+.|+.+
T Consensus       209 TfSKa~gLAGlRlGy~ia~~~~i~~l~~v----r~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~  282 (356)
T COG0079         209 TFSKAFGLAGLRVGYAIANPELIAALNKV----RPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKAL  282 (356)
T ss_pred             ecHHhhhcchhceeeccCCHHHHHHHHHh----cCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            7999999 688899999999999999753    3567778889999988876552 2345666777777787777765

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=94.15  E-value=0.31  Score=43.41  Aligned_cols=121  Identities=14%  Similarity=0.079  Sum_probs=71.3

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchh--cccccccC-Cccc-cc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN-GHPV-AA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~-G~p~-~a  161 (224)
                      +..+|++|-.....|.+.+-+...+.+++.     |-.-++ ++.   ......  ...|++  +++|.++| |-.+ |+
T Consensus       149 ~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a-~~~---~~~~l~--~~~Divv~S~sK~l~g~~~~~gG~  222 (398)
T PRK08249        149 GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFA-TPI---NQNPLA--LGADLVIHSATKFLSGHADALGGV  222 (398)
T ss_pred             CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcC-ccc---cCCchh--hCCCEEeccCceecCCCCCceEEE
Confidence            567888987666678887766666655555     111111 111   011111  236766  57899986 4333 55


Q ss_pred             ceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         162 VITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       162 v~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +++++++++.+...  ........+|..++.++..|+.+..  ..++..++.+.+.+.|+
T Consensus       223 vv~~~~l~~~l~~~--~~~~g~~~s~~~a~l~l~~l~tL~~--R~~~~~~na~~la~~L~  278 (398)
T PRK08249        223 VCGSKELMEQVYHY--REINGATMDPMSAYLILRGMKTLKL--RVRQQQESAMALAKYLQ  278 (398)
T ss_pred             EECCHHHHHHHHHH--HHhcCCCCCHHHHHHHHhCcchHHH--HHHHHHHHHHHHHHHHH
Confidence            67788888877533  2224556788889888888888843  23444455555555554

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=94.11  E-value=0.04  Score=49.77  Aligned_cols=22  Identities=41%  Similarity=0.771  Sum_probs=19.4

Q ss_pred             CCC-cceeeccCCceeEEEEeec
Q psy6205           3 RYP-LIGDVRGIGLFVGVELVTC   24 (224)
Q Consensus         3 ~~p-~v~~vRg~Gl~~gielv~~   24 (224)
                      +|| .|++|||.|+|.||||+++
T Consensus       369 ~~~~~i~~vRG~Gl~~giel~~~  391 (442)
T TIGR03372       369 EYPDLIIEARGKGLLMAIEFRDN  391 (442)
T ss_pred             hCCCceEEEecceEEEEEEeCCh
Confidence            478 7899999999999999764

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK07049 methionine gamma-lyase; Validated

Probab=94.11  E-value=0.39  Score=43.22  Aligned_cols=126  Identities=15%  Similarity=0.018  Sum_probs=72.0

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH-H-H-hCCcc-c-cc--cchhhhhcCCCCCCchh--cccccccC--Ccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH-V-Q-VGFGR-V-GT--HWWAFQLQGDDIIPDIV--TVGKPMGN--GHP  158 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-v-~-tG~Gr-t-G~--~~~~~~~~g~~v~pDi~--~~~K~l~~--G~p  158 (224)
                      +++.+|++|....-.|.+.+.+++.+.++.. - + .+.-- . ..  ....+.-..  ...||+  +++|.++|  |+-
T Consensus       173 ~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~pl~--~g~divv~S~SK~~gG~~glr  250 (427)
T PRK07049        173 GRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKPLE--HGADLSVYSLTKYVGGHSDLV  250 (427)
T ss_pred             CCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCccc--cCCCEEEEcCceeecCCCCcE
Confidence            4678999997666688777666665555541 0 0 01000 0 00  000011111  225766  68999995  688


Q ss_pred             cccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         159 VAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       159 ~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +|++++++++.+.+...  ........+|..+.+++..|+.+..  .+++..+..+.+.+.|+
T Consensus       251 ~G~vv~~~~l~~~l~~~--~~~~g~~ls~~~a~l~~r~L~tl~~--R~~~~~~~a~~la~~L~  309 (427)
T PRK07049        251 AGAVLGRKALIRQVRAL--RSAIGTQLDPHSCWMLGRSLETLVL--RMERANRNARAVAEFLR  309 (427)
T ss_pred             EEEEECCHHHHHHHHHH--HHhcCCCCCHHHHHHHHcCCChHHH--HHHHHHHHHHHHHHHHH
Confidence            89999999988877642  1122345778888888888876632  13333444444444444

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=94.10  E-value=0.092  Score=47.20  Aligned_cols=79  Identities=23%  Similarity=0.346  Sum_probs=41.6

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCC---CccccCCCCCCCCCChhHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPC---PDVYRGKYPADKYPDEDLGVKYAQDVQ   79 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~---P~~yr~~~~~~~~~~~~~~~~~~~~l~   79 (224)
                      +||.+.++||.|+|+|+|++.+.  +.+.......+.......+++..+.   .+..|..++...  +++..++.++.|+
T Consensus       349 ~~~~~~~vrg~Gl~~gi~~~~~~--~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~--t~~~i~~~~~~l~  424 (433)
T PRK08117        349 KHPVIGDVRGIGLMIGIEIVDPD--GEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTV--TKEEIDEGLDILD  424 (433)
T ss_pred             cCCceeeeecCCcEEEEEEecCC--CCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccC--CHHHHHHHHHHHH
Confidence            47888999999999999998643  2222222222222222233333222   123332211111  2566667777777


Q ss_pred             HHHHHH
Q psy6205          80 DLIEAM   85 (224)
Q Consensus        80 ~~~~~~   85 (224)
                      +.++.+
T Consensus       425 ~~l~~~  430 (433)
T PRK08117        425 EALTEY  430 (433)
T ss_pred             HHHHHH
Confidence            766543

>PRK08361 aspartate aminotransferase; Provisional

Probab=94.08  E-value=0.3  Score=43.05  Aligned_cols=73  Identities=14%  Similarity=0.151  Sum_probs=45.4

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHhhhh
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET----ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~----~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +++|.+| .|+-+|.+++++++.+.+...  ....+++.+++...++.+.|+.-..    +...++.++.-+.+.+.|++
T Consensus       234 s~SK~~~~~GlRiG~~~~~~~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  311 (391)
T PRK08361        234 SFSKTFAMTGWRLGFVIAPEQVIKDMIKL--HAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKE  311 (391)
T ss_pred             cCchhcCCcHhhhhhhccCHHHHHHHHHH--HhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6899998 688899999999998876532  1123445566666666666642111    12344455555666666654

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=94.00  E-value=0.84  Score=40.70  Aligned_cols=124  Identities=13%  Similarity=0.144  Sum_probs=77.8

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchh--cccccccCCcccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGNGHPVA  160 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~G~p~~  160 (224)
                      ++..|++.-+....|.+.|.++..+.+++.        ++ ++|..-   .-.+.    ..+|++  .+.|..| .--+|
T Consensus       173 ~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~-~~g~~~---~~~~~----~~~d~~~~s~~K~~g-p~G~G  243 (424)
T PLN02855        173 KTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQ-SVPHMP---VDVQT----LGADFLVASSHKMCG-PTGIG  243 (424)
T ss_pred             CceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhh-hcCCcC---CCchh----cCCCEEEeecccccC-CCccE
Confidence            566777877777889888887777777776        33 233211   11122    237877  5689433 12368


Q ss_pred             cceecHHHHHhhhcC---Ccc----c------------ccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHH
Q psy6205         161 AVITTKEIAKSFQET---GVE----Y------------FNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHT  218 (224)
Q Consensus       161 av~~~~~i~~~~~~~---~~~----~------------~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~  218 (224)
                      ++.+++++.+.+...   +..    +            +..-+-|..+.++..++|+.+.+   +.+.++.+++.++|++
T Consensus       244 ~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~  323 (424)
T PLN02855        244 FLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYE  323 (424)
T ss_pred             EEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            889999887766421   000    0            01112455677777788887754   4677888899999999


Q ss_pred             hhhhc
Q psy6205         219 PKKEN  223 (224)
Q Consensus       219 ~l~~l  223 (224)
                      .|+++
T Consensus       324 ~L~~~  328 (424)
T PLN02855        324 KLSSV  328 (424)
T ss_pred             HHhcC
Confidence            88764

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=93.96  E-value=0.13  Score=44.55  Aligned_cols=75  Identities=21%  Similarity=0.209  Sum_probs=52.0

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++|.++ .|+-+|.+++++++.+.+.... ....+++.++++.+++.+.|+.-+ -++..+++++.-+++.+.|+++
T Consensus       207 S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  283 (353)
T PRK05387        207 TFSKSRSLAGLRVGFAIGHPELIEALNRVK-NSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL  283 (353)
T ss_pred             ehhHhhcchhhhceeeecCHHHHHHHHHhh-ccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            5899998 7888999999999998876431 122456677888877777774211 1245566667777777777654

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=93.87  E-value=0.18  Score=43.58  Aligned_cols=72  Identities=13%  Similarity=0.235  Sum_probs=48.0

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|||.++ .|+-+|.+++++++++.+....    .+++.++++..++.++|+..+. ++..+.+++.-+++.+.|+++
T Consensus       199 S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~----~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  272 (335)
T PRK14808        199 TFSKAFSLAAQRIGYVVSSEKFIDAYNRVR----LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM  272 (335)
T ss_pred             echhhccCcccceEEEEeCHHHHHHHHHhc----CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            6899999 7899999999999999886431    2455567777777777764321 222334444445666666654

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=93.60  E-value=0.12  Score=46.58  Aligned_cols=72  Identities=13%  Similarity=0.025  Sum_probs=39.2

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLI   82 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~   82 (224)
                      +||.|++|||.|+|++||+.....        +..+.......+.+..+..+..|...+-.-  +++..++.++-|++.+
T Consensus       354 ~~~~v~~vRg~Gl~~~iel~~~~~--------~~~i~~~l~e~Gi~v~~~g~~l~~~Ppl~i--t~~ei~~~~~~l~~~l  423 (429)
T PRK06173        354 EFDSVAEVRVLGAIGVVEMKEPVN--------MATLQPRFVEHGIWVRPFGKLVYIMPPFII--SPDELSQLTSGLLRVL  423 (429)
T ss_pred             cCCCeeeeeccceEEEEEeCCccc--------HHHHHHHHHHCCeEEEecCCEEEEeCCccC--CHHHHHHHHHHHHHHH
Confidence            578899999999999999953211        111222222223333332233332222111  2566677777787777


Q ss_pred             HH
Q psy6205          83 EA   84 (224)
Q Consensus        83 ~~   84 (224)
                      ..
T Consensus       424 ~~  425 (429)
T PRK06173        424 KQ  425 (429)
T ss_pred             HH
Confidence            64

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=93.56  E-value=0.17  Score=42.86  Aligned_cols=137  Identities=9%  Similarity=0.066  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhC-CccccccchhhhhcCCCCCCc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVG-FGRVGTHWWAFQLQGDDIIPD  145 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG-~GrtG~~~~~~~~~g~~v~pD  145 (224)
                      .+++++.++.   +++.-+.++..|..  .|.+.+.++..+.+++.        +... +.-.+. + -.....  ...|
T Consensus       142 ~~~l~~~l~~---~~~~k~v~l~~p~~--~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~-~-~~~~~~--~~~d  212 (294)
T cd00615         142 PETFKKALIE---HPDAKAAVITNPTY--YGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPI-L-PSSAAM--AGAD  212 (294)
T ss_pred             HHHHHHHHHh---CCCceEEEEECCCC--CCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcc-c-Ccchhh--cCCc
Confidence            4556665542   33333445555643  68777766677776665        2211 100111 0 000111  2367


Q ss_pred             hh--cccccccCCccccc-ceecHHHH--HhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHH
Q psy6205         146 IV--TVGKPMGNGHPVAA-VITTKEIA--KSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHT  218 (224)
Q Consensus       146 i~--~~~K~l~~G~p~~a-v~~~~~i~--~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~  218 (224)
                      ++  ++.|.++ |++.++ +..+++..  +.+... .....|.+-+...+++..++++++.+  +++.+++.++.+++++
T Consensus       213 iv~~S~hK~l~-g~~~~~~l~~~~~~~~~~~~~~~-~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r~  290 (294)
T cd00615         213 IVVQSTHKTLP-ALTQGSMIHVKGDLVNPDRVNEA-LNLHQSTSPSYLILASLDVARAMMALEGKELVEELIELALYARQ  290 (294)
T ss_pred             EEEEchhcccc-hHhHHHHHHhCCCcCCHHHHHHH-HHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            76  5789884 343333 33443321  112211 12335667788888888888888853  4688899999999999


Q ss_pred             hhhh
Q psy6205         219 PKKE  222 (224)
Q Consensus       219 ~l~~  222 (224)
                      +|++
T Consensus       291 ~l~~  294 (294)
T cd00615         291 EINK  294 (294)
T ss_pred             HHhC
Confidence            8864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK10534 L-threonine aldolase; Provisional

Probab=93.49  E-value=0.16  Score=43.67  Aligned_cols=75  Identities=12%  Similarity=0.068  Sum_probs=43.2

Q ss_pred             hhcccccccCCcccc-cceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcC
Q psy6205         146 IVTVGKPMGNGHPVA-AVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       146 i~~~~K~l~~G~p~~-av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      +++++|+.+  .++| ++++++++.+.+..........+.-+.++.+++.++|+..  ...+++..+.-++|.+.|+++|
T Consensus       192 ~~s~SK~~~--~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~~L~~~g  267 (333)
T PRK10534        192 TICLSKGLG--TPVGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAEQLREAG  267 (333)
T ss_pred             EEEeEcCCC--CcccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHhCC
Confidence            457999765  3567 4778999998876421111112233445667777777542  2233334444567778777653

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=93.42  E-value=0.37  Score=42.74  Aligned_cols=119  Identities=19%  Similarity=0.110  Sum_probs=66.0

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH----H-HhCCccccccchhhhhcCCCCCCchhc--ccccccC-Cccc-cc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH----V-QVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGN-GHPV-AA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----v-~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~-G~p~-~a  161 (224)
                      +..+|++|......|.+.+.++..+.+++.    | -.-+ .++. .  ..-..  .-.|+++  ++|.+++ |..+ |+
T Consensus       146 ~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~-~~~~-~--~~pl~--~g~Divv~S~sK~~~g~g~~~GG~  219 (390)
T PRK08133        146 NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCF-CTPA-L--QQPLK--LGADVVIHSATKYLDGQGRVLGGA  219 (390)
T ss_pred             CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCC-cccc-c--CCchh--hCCcEEEeecceeecCCcceEeEE
Confidence            567899997766678877766666666665    1 0001 1111 0  01011  2357764  6899976 5666 56


Q ss_pred             ceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q psy6205         162 VITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLH  217 (224)
Q Consensus       162 v~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~  217 (224)
                      +++++++.+.+...  ........+|..+..++..|+.+..  +...+++..+.+.|.
T Consensus       220 vv~~~~~~~~~~~~--~~~~g~~~~~~~a~~~l~gl~tl~~R~~~~~~~a~~la~~L~  275 (390)
T PRK08133        220 VVGSKELMEEVFGF--LRTAGPTLSPFNAWVFLKGLETLSLRMEAHSANALALAEWLE  275 (390)
T ss_pred             EEcCHHHHHHHHHH--HHHhCCCCCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHH
Confidence            66777776655422  1112334567777777777666532  234445555555444

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=93.31  E-value=0.13  Score=46.21  Aligned_cols=77  Identities=21%  Similarity=0.215  Sum_probs=39.9

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCCC---ccccCCCCCCCCCChhHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCP---DVYRGKYPADKYPDEDLGVKYAQDVQ   79 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P---~~yr~~~~~~~~~~~~~~~~~~~~l~   79 (224)
                      +||.+.+|||.|+|+++|+.. +.+..+....+..+.......++...+..   ++.|..++...  +++..++.++.|+
T Consensus       340 ~~~~i~~vrg~G~~~~i~~~~-~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i--~~~~i~~~~~~l~  416 (421)
T PRK06777        340 SCPAIVDIRARGSMVAVEFND-PQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRFLYPLTI--PDAQFSKALNILT  416 (421)
T ss_pred             hCCCeEEecCceEEEEEEEec-CccCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCCC--CHHHHHHHHHHHH
Confidence            478899999999999999964 22222322233333333223344444431   33333322111  2455555555555


Q ss_pred             HHH
Q psy6205          80 DLI   82 (224)
Q Consensus        80 ~~~   82 (224)
                      +.+
T Consensus       417 ~~l  419 (421)
T PRK06777        417 RLL  419 (421)
T ss_pred             HHH
Confidence            443

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=93.31  E-value=0.88  Score=39.44  Aligned_cols=74  Identities=11%  Similarity=-0.036  Sum_probs=45.5

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++|.+| .|+=+|.+++++++.+.+...  ....+.+.++++.+++.+.+..-+ -....+++++.-+.+.+.|++.
T Consensus       203 s~SK~~g~~GlRiG~~~~~~~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~  278 (350)
T TIGR03537       203 SLSKRSGMTGYRSGFVAGDEKLISFLRKL--RANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV  278 (350)
T ss_pred             ecccccCCccccceeeecCHHHHHHHHHH--HHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            5799996 578888899999998887642  112334445566666666554110 1234555666666676666653

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=93.30  E-value=0.12  Score=46.29  Aligned_cols=48  Identities=31%  Similarity=0.409  Sum_probs=29.2

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecC
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAP   51 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp   51 (224)
                      +||.+.+|||.|+|.++|++. +.+..|....+..+.......++...|
T Consensus       339 ~~~~~~~vrg~G~~~~i~~~~-~~~~~~~~~~~~~l~~~~~~~Gv~i~p  386 (420)
T TIGR00700       339 VDPRIGDVRGLGAMIAVELVD-PGTTEPDAGLAERIATAAHAAGLLLLT  386 (420)
T ss_pred             hCCCEEEeeccceEEEEEEec-CCCCCccHHHHHHHHHHHHHCCeEEec
Confidence            478899999999999999974 333334333334444333333444444

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=93.26  E-value=0.18  Score=38.04  Aligned_cols=72  Identities=15%  Similarity=0.145  Sum_probs=48.3

Q ss_pred             CCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCc
Q psy6205          88 NGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGH  157 (224)
Q Consensus        88 ~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~  157 (224)
                      ...+++++++++.....|...+.++..+.+++.        .+.++..... .  .....  ..+|+++.|  |.+++ .
T Consensus        89 ~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~-~--~~~~~--~~~d~~~~s~~K~~~~-~  162 (170)
T cd01494          89 AKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAP-G--VLIPE--GGADVVTFSLHKNLGG-E  162 (170)
T ss_pred             ccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEeccccccccccc-c--ccccc--ccCCEEEEEcccccCC-C
Confidence            356899999999999888877776666666665        5554433321 1  11112  458999988  99987 6


Q ss_pred             ccccceec
Q psy6205         158 PVAAVITT  165 (224)
Q Consensus       158 p~~av~~~  165 (224)
                      ..|+++++
T Consensus       163 ~~G~l~~~  170 (170)
T cd01494         163 GGGVVIVK  170 (170)
T ss_pred             ceEEEEeC
Confidence            66666653

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=93.14  E-value=0.13  Score=46.07  Aligned_cols=79  Identities=20%  Similarity=0.328  Sum_probs=44.5

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCC---CccccCCCCCCCCCChhHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPC---PDVYRGKYPADKYPDEDLGVKYAQDVQ   79 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~---P~~yr~~~~~~~~~~~~~~~~~~~~l~   79 (224)
                      ++|.+.++||.|++++++|..+..++.|....+..+...+...+....+.   ++..|-.++...  +++..++.++.|+
T Consensus       341 ~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~--t~~ei~~~i~~l~  418 (425)
T PRK08088        341 KHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTI--EDAQIRQGLEIIA  418 (425)
T ss_pred             hCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCc--CHHHHHHHHHHHH
Confidence            47888999999999999998765555443333333444433334333322   233342222111  2555666666666


Q ss_pred             HHHH
Q psy6205          80 DLIE   83 (224)
Q Consensus        80 ~~~~   83 (224)
                      +.++
T Consensus       419 ~~l~  422 (425)
T PRK08088        419 QCFD  422 (425)
T ss_pred             HHHH
Confidence            6665

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=93.10  E-value=0.16  Score=44.14  Aligned_cols=72  Identities=13%  Similarity=0.095  Sum_probs=47.0

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETE---NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~---~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|+|.+| .|+-+|.+++++++.+.+...    ...|..+.++.++|.+.|+.-..+   +..+.+.+.-+++.+.|+++
T Consensus       210 SfSK~~glaGlRiGy~i~~~~~i~~l~~~----~~~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  285 (351)
T PRK01688        210 TLSKAFALAGLRCGFTLANEEVINLLLKV----IAPYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEI  285 (351)
T ss_pred             cchHhhcCHHHHHhHHhCCHHHHHHHHhc----cCCCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            6899998 688899999999999888643    223556666777777776521111   22334444456677777654

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=92.95  E-value=1.3  Score=39.72  Aligned_cols=128  Identities=19%  Similarity=0.174  Sum_probs=65.8

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH---HHhCCc--cccccchhhhhcCCCCCCchhcc-----ccccc-CCcc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH---VQVGFG--RVGTHWWAFQLQGDDIIPDIVTV-----GKPMG-NGHP  158 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~---v~tG~G--rtG~~~~~~~~~g~~v~pDi~~~-----~K~l~-~G~p  158 (224)
                      +++++|++... ...|.+.+.++..+.+++.   +..+.-  ..|. +   ...+ ....|+++.     ||... +|.-
T Consensus       203 ~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~~~g~-~---~~~~-~~~~D~~~~s~~k~~~~~~~~Gpg  276 (447)
T PRK00451        203 DDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVSLGL-L---KPPG-EYGADIVVGEGQPLGIPLSFGGPY  276 (447)
T ss_pred             CCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChHHhcc-C---CCcc-cCCCCEEEECCCcCCCCCCCCCCC
Confidence            35677777653 5678887766666666655   111100  0111 1   0011 234687754     45533 3334


Q ss_pred             cccceecHHHHHhhhcC-------------------------Ccccc-cCCCCc-HHHHHHHHHHHHHHhh---hhHHHH
Q psy6205         159 VAAVITTKEIAKSFQET-------------------------GVEYF-NTYGGN-PVSCAVANAVMEVLET---ENLREH  208 (224)
Q Consensus       159 ~~av~~~~~i~~~~~~~-------------------------~~~~~-~T~~~~-p~~~aaa~a~l~~~~~---~~l~~~  208 (224)
                      +|.+.+++++.+.+...                         .+... .++..+ ++...++.+.|+.+.+   +...++
T Consensus       277 ~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~  356 (447)
T PRK00451        277 LGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQ  356 (447)
T ss_pred             chHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHH
Confidence            66788888888764210                         00111 122222 1222233334554433   356778


Q ss_pred             HHHHHHHHHHhhhhc
Q psy6205         209 ALDVGNQLHTPKKEN  223 (224)
Q Consensus       209 ~~~~g~~l~~~l~~l  223 (224)
                      ..++.+++.++|+++
T Consensus       357 ~~~~~~~l~~~L~~~  371 (447)
T PRK00451        357 NHQKAHYLAERLAEI  371 (447)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            888999999999875

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=92.85  E-value=0.58  Score=41.73  Aligned_cols=119  Identities=16%  Similarity=0.082  Sum_probs=68.8

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchhc--ccccccC-Cccc-cc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGN-GHPV-AA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~-G~p~-~a  161 (224)
                      +..+|++|......|.+.+-+++.+.+++.     |-.-+ -++. .+..-.+|    .|+++  +.|.++| |-.+ |+
T Consensus       155 ~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~-a~~~-~~~~~~~g----aDivv~S~tK~l~g~g~~~gG~  228 (403)
T PRK07810        155 PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVF-ATPL-LQRGLPLG----ADVVVYSGTKHIDGQGRVLGGA  228 (403)
T ss_pred             CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCC-Cccc-cCChhhcC----CcEEEccCCceecCCcCceeEE
Confidence            567899998777788777766676666665     11112 1221 11011123    57764  7899976 5444 66


Q ss_pred             ceecHHHHH-hhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q psy6205         162 VITTKEIAK-SFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLH  217 (224)
Q Consensus       162 v~~~~~i~~-~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~  217 (224)
                      ++++++..+ .+...  ........+|..++.++..|+.+..  +...+++.++.++|.
T Consensus       229 v~~~~~~~~~~l~~~--~~~~g~~~s~~~a~l~l~~L~tl~~R~~~~~~~a~~~a~~L~  285 (403)
T PRK07810        229 ILGDREYIDGPVQKL--MRHTGPALSAFNAWVLLKGLETLALRVRHSNASALRIAEFLE  285 (403)
T ss_pred             EEeChHHHHHHHHHH--HHHhCCCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHh
Confidence            777877554 23211  1112345789999999999888853  233444444444443

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=92.83  E-value=0.14  Score=45.82  Aligned_cols=74  Identities=15%  Similarity=0.064  Sum_probs=39.0

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLI   82 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~   82 (224)
                      ++|.|.++||.|+|+++++..+...     ..+..+.......+++..+..+..|...+...  +++..+..++.|++.+
T Consensus       348 ~~~~i~~vrg~Gl~~~i~l~~~~~~-----~~~~~l~~~l~~~Gv~v~~~~~~lR~~p~l~~--t~edId~~v~~l~~al  420 (423)
T PRK05964        348 DLPGVADVRVLGAIGAVELDRPVLE-----RDGPALRAFALERGVLLRPLGNTIYLMPPYII--TAEELDRITDAIVEVA  420 (423)
T ss_pred             cCCCeEEeecccEEEEEEeccCcch-----hHHHHHHHHHHHCCeEEEecCCEEEEeCCccc--CHHHHHHHHHHHHHHH
Confidence            4788899999999999999643310     11112222222233333333233332211111  2566667777777666


Q ss_pred             H
Q psy6205          83 E   83 (224)
Q Consensus        83 ~   83 (224)
                      +
T Consensus       421 ~  421 (423)
T PRK05964        421 D  421 (423)
T ss_pred             h
Confidence            4

>PRK04311 selenocysteine synthase; Provisional

Probab=92.45  E-value=0.99  Score=41.13  Aligned_cols=104  Identities=14%  Similarity=0.203  Sum_probs=56.6

Q ss_pred             CceEEEEccccC--CCC--cccCCHHHHHHHHHH-----HHhCCccccccc--hh-------hhhcCCCCCCchhccc--
Q psy6205          91 RPCAFFAESLQS--CGG--QIIPPANYLREVYKH-----VQVGFGRVGTHW--WA-------FQLQGDDIIPDIVTVG--  150 (224)
Q Consensus        91 ~iaavi~Epv~~--~~G--~~~~~~~~l~~~~~~-----v~tG~GrtG~~~--~~-------~~~~g~~v~pDi~~~~--  150 (224)
                      +.++|+++-...  ..|  ...+-+++.+..++.     |-.|.|-.+. .  |+       .+...  .-.|++++|  
T Consensus       216 ~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~-~~~~gl~~~p~~~~~l~--~GaDiv~fSg~  292 (464)
T PRK04311        216 NTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVD-LSQYGLPDEPTVQELLA--AGVDLVTFSGD  292 (464)
T ss_pred             cCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCccccc-chhccCCCCCchhhHHh--cCCcEEEecCc
Confidence            467777765432  233  345666777777776     3334443331 1  10       11111  237999988  


Q ss_pred             ccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH
Q psy6205         151 KPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL  200 (224)
Q Consensus       151 K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~  200 (224)
                      |.+||.. .|++++++++.+.+...  ...-++.-+-...++-.++|..+
T Consensus       293 K~LgGp~-~G~i~g~~~li~~l~~~--~~~r~lr~dk~~l~~l~~~l~~~  339 (464)
T PRK04311        293 KLLGGPQ-AGIIVGKKELIARLKKH--PLKRALRVDKLTLAALEATLRLY  339 (464)
T ss_pred             ccccCCc-eEEEEEcHHHHHHHhhc--hhHHHHhcchHHHHHHHHHHHHH
Confidence            9998653 56788999998877643  12222222334444555555533

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=92.45  E-value=0.63  Score=41.23  Aligned_cols=117  Identities=13%  Similarity=0.058  Sum_probs=68.6

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HH-hCCccccccchhhhhcCCCCCCchh--cccccccC-Ccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQ-VGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN-GHP  158 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~-tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~-G~p  158 (224)
                      ++.+|++|......|.+.+.++..+.+++.        .+ +|+.  .+   .. .+|    .|++  .+.|.++| |-.
T Consensus       137 ~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~--~~---~l-~~G----aDivv~S~sK~l~g~~d~  206 (385)
T PRK08574        137 RTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLL--YR---PL-RHG----ADFVVHSLTKYIAGHNDV  206 (385)
T ss_pred             CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcccc--CC---hh-hhC----CcEEEeeCceeecCCCCc
Confidence            577889998887788888766666666665        21 2221  00   01 123    5766  47999976 433


Q ss_pred             c-cccee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         159 V-AAVIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       159 ~-~av~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      + |++++ ++++.+.+...  ....+...+|..++.++..|+.+..  ..++..++..++.+.|+
T Consensus       207 ~gG~vi~~~~~~~~~~~~~--~~~~g~~~~p~~a~l~l~~l~tL~~--R~~~~~~na~~la~~L~  267 (385)
T PRK08574        207 VGGVAVAWSGEFLEELWEW--RRRLGTIMQPFEAYLVLRGLKTLEV--RFERQCRNAMAIAEFLS  267 (385)
T ss_pred             eeEEEEECcHHHHHHHHHH--HHhcCCCCCHHHHHHHHcccCcHHH--HHHHHHHHHHHHHHHHH
Confidence            3 43454 67777765432  1123455678888888888887753  23333344444444444

>PRK14012 cysteine desulfurase; Provisional

Probab=92.36  E-value=0.86  Score=40.36  Aligned_cols=123  Identities=11%  Similarity=0.060  Sum_probs=69.6

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCcccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPVA  160 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~~  160 (224)
                      +..+|++..+....|.+.+-++..+.+++.        +++ +|..-   .-..  .  ..+|+++++  |.+|. ..+|
T Consensus       144 ~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~-~g~~~---~~~~--~--~~~D~~~~s~~K~~gp-~g~G  214 (404)
T PRK14012        144 DTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQS-VGKVP---IDLS--K--LKVDLMSFSAHKIYGP-KGIG  214 (404)
T ss_pred             CCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchh-cCCcc---cCcc--c--CCCCEEEEehhhccCC-CceE
Confidence            456888888888889888876666666665        332 32211   0111  1  348999887  97653 2467


Q ss_pred             cceecHHHHHhhhcC--Cccc---ccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhh
Q psy6205         161 AVITTKEIAKSFQET--GVEY---FNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       161 av~~~~~i~~~~~~~--~~~~---~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +++++++....+...  +...   ....+-+...+.+..++++.++  .+...++.+++.+++.+.|++
T Consensus       215 ~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~  283 (404)
T PRK14012        215 ALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKD  283 (404)
T ss_pred             EEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence            788876643322211  0000   0011123333444445666553  235677888899999888865

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=92.35  E-value=0.44  Score=41.07  Aligned_cols=71  Identities=7%  Similarity=-0.025  Sum_probs=44.5

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|||.++ .|+-+|.+++++++.+.+...    ..++..+..+.++ +...+.-. .++..+..++.-+++.+.|+++
T Consensus       190 SfSK~~~l~GlRiGy~v~~~~li~~l~~~----~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  262 (332)
T PRK06425        190 SLTKILGIPSLRIGYIATDDYNMKISRKI----TEPWSVCDPAIDF-IRSIDLDYVAKHSLDIMENERSYLINNLEAM  262 (332)
T ss_pred             ecHHhcCCchhhheeeecCHHHHHHHHHc----CCCCccCHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            6899999 899999999999999888642    1233334443332 22222100 1245666677777777777654

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=92.34  E-value=0.37  Score=41.97  Aligned_cols=71  Identities=13%  Similarity=0.081  Sum_probs=47.8

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhh
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +|||.++ .|+-+|.+++++++++.+...    ...++-+.++..++.+.|+--. .+...+.+++.-+++.+.|++
T Consensus       213 S~SK~~~l~GlRiG~~v~~~~~~~~~~~~----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  285 (360)
T PRK07392        213 SLTKFYSLPGLRLGYAIAHPDRLQRWQQW----RDPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLAS  285 (360)
T ss_pred             echhhhcCCchheeeeeCCHHHHHHHHhh----CCCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6899999 899999999999999887632    1346677888888777775211 112233444555556666654

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=92.30  E-value=1.4  Score=38.53  Aligned_cols=123  Identities=15%  Similarity=0.087  Sum_probs=71.0

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCcc-c
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHP-V  159 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p-~  159 (224)
                      +...|++.-.....|.+.+.++..+.+++.        ++. +|..-   .....    ..+|+++++  |-.  |.| +
T Consensus       140 ~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~-~g~~~---~~~~~----~~~D~~~~s~~K~~--gp~G~  209 (382)
T TIGR03403       140 KTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQA-IGKIP---VDVQK----AGVDFLSFSAHKFH--GPKGV  209 (382)
T ss_pred             CCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhh-cCCCc---cCccc----cCCCEEEEcchhhC--CCCce
Confidence            346777877777889888877666666665        322 22110   11111    337999888  953  322 5


Q ss_pred             ccceecHHHH--HhhhcCC-cccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         160 AAVITTKEIA--KSFQETG-VEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       160 ~av~~~~~i~--~~~~~~~-~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |++..+++..  ..+.... ..-....+-|..+..++.++|+.+++  +...++++++.++|.++|+++
T Consensus       210 g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~  278 (382)
T TIGR03403       210 GGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLEL  278 (382)
T ss_pred             EEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence            6676665531  0010000 00012344667777777778877654  345677888888888888754

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=92.10  E-value=1.8  Score=43.16  Aligned_cols=141  Identities=11%  Similarity=0.072  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH----HHhCCccccc-cchhhhhcCCCCCCchhcc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH----VQVGFGRVGT-HWWAFQLQGDDIIPDIVTV  149 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----v~tG~GrtG~-~~~~~~~~g~~v~pDi~~~  149 (224)
                      +++|++.++   .+.+++++|++--.-..+|...+-++..+.+++.    +.-|---.+. ..-.-..    .-.|++++
T Consensus       653 le~L~~~i~---~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~----~GaD~~~~  725 (993)
T PLN02414        653 IEELRKAAE---AHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGF----IGADVCHL  725 (993)
T ss_pred             HHHHHHHHh---ccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccc----cCCCEEEe
Confidence            566666664   3445788888875555577777767777777665    1011100000 0000011    23688766


Q ss_pred             --ccccc-----CCcccccceecHHHHHhhhcCC-----------c-ccccC----CCCcHHHHHHHHHHHHHHhhhhH-
Q psy6205         150 --GKPMG-----NGHPVAAVITTKEIAKSFQETG-----------V-EYFNT----YGGNPVSCAVANAVMEVLETENL-  205 (224)
Q Consensus       150 --~K~l~-----~G~p~~av~~~~~i~~~~~~~~-----------~-~~~~T----~~~~p~~~aaa~a~l~~~~~~~l-  205 (224)
                        .|.++     ||--+|.+.+++++...+....           . ....|    +.|+.+.+.++..-+..+=.+++ 
T Consensus       726 s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~  805 (993)
T PLN02414        726 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLT  805 (993)
T ss_pred             cCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHH
Confidence              68665     3345888888988877664321           0 00133    44666777777777777766666 


Q ss_pred             --HHHHHHHHHHHHHhhhh
Q psy6205         206 --REHALDVGNQLHTPKKE  222 (224)
Q Consensus       206 --~~~~~~~g~~l~~~l~~  222 (224)
                        .+++..+..|++++|++
T Consensus       806 ~~a~~a~~nAnYl~~rL~~  824 (993)
T PLN02414        806 DASKIAILNANYMAKRLEG  824 (993)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence              77788899999999865

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=92.02  E-value=3.7  Score=36.46  Aligned_cols=139  Identities=12%  Similarity=0.105  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCchh
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDIV  147 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi~  147 (224)
                      .+++++.+++   + .++.+|.+==.=.+.|++.|.++.-+.+++.       -.|.||=.   .+-.+.||    -|++
T Consensus       119 p~~v~~~L~~---~-~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~---~~~vd~wg----iDv~  187 (383)
T COG0075         119 PEEVEEALDK---D-PDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGE---PLKVDEWG----IDVA  187 (383)
T ss_pred             HHHHHHHHhc---C-CCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCc---ccchhhcC----ccEE
Confidence            4566666652   2 3443333221223468888888888888888       23334322   23455666    5666


Q ss_pred             cc--cccccCCcccccceecHHHHHhhhcCCcc----------------cccCCCCcHHHHHHHHHHHHHHhhh---hHH
Q psy6205         148 TV--GKPMGNGHPVAAVITTKEIAKSFQETGVE----------------YFNTYGGNPVSCAVANAVMEVLETE---NLR  206 (224)
Q Consensus       148 ~~--~K~l~~G~p~~av~~~~~i~~~~~~~~~~----------------~~~T~~~~p~~~aaa~a~l~~~~~~---~l~  206 (224)
                      +-  =|+|++=--+|.+..+++..+.+......                ..+-|+-+....-+-.++|+.|.++   +..
T Consensus       188 itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~  267 (383)
T COG0075         188 ITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARI  267 (383)
T ss_pred             EecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHH
Confidence            54  48998611236689999998887643111                1122333344566667899999765   567


Q ss_pred             HHHHHHHHHHHHhhhhcC
Q psy6205         207 EHALDVGNQLHTPKKENN  224 (224)
Q Consensus       207 ~~~~~~g~~l~~~l~~l~  224 (224)
                      ++=+.+++.+++.++++|
T Consensus       268 ~RH~~~~~a~r~~~~alG  285 (383)
T COG0075         268 ARHRRLAEALRAGLEALG  285 (383)
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            777889999999999876

>PRK05957 aspartate aminotransferase; Provisional

Probab=91.94  E-value=1.5  Score=38.55  Aligned_cols=75  Identities=11%  Similarity=0.069  Sum_probs=44.2

Q ss_pred             hhccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhh
Q psy6205         146 IVTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       146 i~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +-++||.+| .|+-+|++++++++++.+...  ....+.+.+.++..++..+|+.=.  -++..+++++.-+++.+.|++
T Consensus       228 ~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~  305 (389)
T PRK05957        228 LYSLSKAYGFASWRIGYMVIPIHLLEAIKKI--QDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQ  305 (389)
T ss_pred             EecchhhccCccceeEEEecCHHHHHHHHHH--HhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            346999997 689999999999999988643  111223334455555555553200  012334455555556666654

>PRK09105 putative aminotransferase; Provisional

Probab=91.93  E-value=0.52  Score=41.38  Aligned_cols=75  Identities=13%  Similarity=0.090  Sum_probs=49.1

Q ss_pred             Cchh---ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHH
Q psy6205         144 PDIV---TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHT  218 (224)
Q Consensus       144 pDi~---~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~  218 (224)
                      ++++   +|||.+| .|+-+|.+++++++.+.+...     .++..+..+..++.+.|+.-+ -+...+++++.-+++.+
T Consensus       223 ~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~-----~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~  297 (370)
T PRK09105        223 KDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF-----GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIA  297 (370)
T ss_pred             CCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc-----CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            4544   6899998 689999999999999887642     234455666666666664211 12334556666666777


Q ss_pred             hhhhc
Q psy6205         219 PKKEN  223 (224)
Q Consensus       219 ~l~~l  223 (224)
                      .|+++
T Consensus       298 ~L~~~  302 (370)
T PRK09105        298 WLKKK  302 (370)
T ss_pred             HHHHC
Confidence            77654

>PRK07337 aminotransferase; Validated

Probab=91.92  E-value=1.8  Score=38.04  Aligned_cols=78  Identities=13%  Similarity=0.125  Sum_probs=47.9

Q ss_pred             Cchh---ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH--Hh-hhhHHHHHHHHHHHH
Q psy6205         144 PDIV---TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV--LE-TENLREHALDVGNQL  216 (224)
Q Consensus       144 pDi~---~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~--~~-~~~l~~~~~~~g~~l  216 (224)
                      ++++   +++|.++ .|+=+|.+++++++.+.+...  ......+.++++..++.+.++-  ++ -....+++++.-+++
T Consensus       222 ~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~~--~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~  299 (388)
T PRK07337        222 DDVITINSFSKYFNMTGWRLGWLVVPEALVGTFEKL--AQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFI  299 (388)
T ss_pred             CCEEEEEechhhcCCchhheeeeecCHHHHHHHHHH--HHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHH
Confidence            4554   5799997 688889999999998887642  1112334566666666666531  11 122345555666666


Q ss_pred             HHhhhhc
Q psy6205         217 HTPKKEN  223 (224)
Q Consensus       217 ~~~l~~l  223 (224)
                      .+.|+++
T Consensus       300 ~~~L~~~  306 (388)
T PRK07337        300 VPALESL  306 (388)
T ss_pred             HHHHHhc
Confidence            6666653

>PRK08636 aspartate aminotransferase; Provisional

Probab=91.89  E-value=2.9  Score=36.98  Aligned_cols=73  Identities=18%  Similarity=0.212  Sum_probs=41.9

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhh
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ++||.+| .|+-+|.+++++++.+.+...  .....++.++++..++...++-.++  +.+.+..++.-+.+.+.|++
T Consensus       245 S~SK~~~~~GlRiG~iv~~~~li~~~~~~--~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  320 (403)
T PRK08636        245 TLSKSYNMAGWRVGFVVGNKKLVGALKKI--KSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLIESFAN  320 (403)
T ss_pred             ecccccCCccceeeeeeCCHHHHHHHHHH--HHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899997 689999999999999887642  1112334444444444444432111  12333344455555555554

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=91.71  E-value=0.37  Score=42.29  Aligned_cols=76  Identities=11%  Similarity=0.067  Sum_probs=46.6

Q ss_pred             hhccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhh
Q psy6205         146 IVTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       146 i~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +-+|||.+| .|+-+|.+++++++.+.+.... . ..+.+.++++..++.+.|+-.++  +++.+++++.-+.+.+.|++
T Consensus       232 ~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~~-~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  309 (383)
T TIGR03540       232 FHSLSKTYNMTGWRIGMAVGNADLIAGLGKVK-T-NVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKK  309 (383)
T ss_pred             EEecccccCCccceeeEEeCCHHHHHHHHHHH-H-hcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            347999997 6888999999999988876421 1 12223344555555555543211  23445566666667777665


Q ss_pred             c
Q psy6205         223 N  223 (224)
Q Consensus       223 l  223 (224)
                      .
T Consensus       310 ~  310 (383)
T TIGR03540       310 I  310 (383)
T ss_pred             C
Confidence            4

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK12414 putative aminotransferase; Provisional

Probab=91.70  E-value=0.33  Score=42.78  Aligned_cols=74  Identities=11%  Similarity=0.114  Sum_probs=49.7

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL-ETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~-~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++||.+| .|+=+|.+++++++.+.+...  ....+++.+.++..++.+.|+-= ....+.+.+++.-+.+.+.|++.
T Consensus       232 SfSK~~~~pGlRiG~~v~~~~l~~~l~~~--~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  307 (384)
T PRK12414        232 SFGKSYHVTGWRVGYCLAPAELMDEIRKV--HQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS  307 (384)
T ss_pred             cccccccCccceEEEEecCHHHHHHHHHH--HhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5899997 789999999999998887643  22246666777777766666320 01134555666667777777653

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=91.64  E-value=2.4  Score=37.18  Aligned_cols=79  Identities=9%  Similarity=-0.022  Sum_probs=43.8

Q ss_pred             Cchhcc--cccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHh
Q psy6205         144 PDIVTV--GKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTP  219 (224)
Q Consensus       144 pDi~~~--~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~  219 (224)
                      .|++++  .|.++|. ..|++++++++.+.+..........+......+++..++++.+.+  .+..++..+.-+++.++
T Consensus       200 ~D~~~~S~~K~l~gp-~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~  278 (363)
T TIGR01437       200 ADLVIYSGAKAIEGP-TSGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEA  278 (363)
T ss_pred             CCEEEEeCCcccCCC-ceEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHH
Confidence            488765  5988654 377788888887765321101111111112335566667776643  23344444455578888


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |+++
T Consensus       279 L~~i  282 (363)
T TIGR01437       279 LNTL  282 (363)
T ss_pred             HhcC
Confidence            8764

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=91.63  E-value=0.44  Score=42.61  Aligned_cols=73  Identities=14%  Similarity=0.056  Sum_probs=47.7

Q ss_pred             cccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--h--hhHHHHHHHHHHHHHHhhhh
Q psy6205         148 TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--T--ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       148 ~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~--~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +|||.++.|+-+|.+++++++.+.+...  ....+++.+.++..++.+.|+-=+  +  ..+.+.+++.-+.+.+.|++
T Consensus       279 SfSK~~~~GlRiG~~i~~~~~~~~~~~~--~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~  355 (431)
T PRK15481        279 SVSKALGPDLRLAFVASDSATSARLRLR--LNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQ  355 (431)
T ss_pred             eeccccCCCceeEEEeCCHHHHHHHHHH--HhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999899999999999998888532  122345567777777777774311  0  12344455555555555554

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=91.43  E-value=0.32  Score=42.72  Aligned_cols=71  Identities=15%  Similarity=0.112  Sum_probs=47.3

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhh
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +|||.+| .|+-+|.+++.+++.+.+...    ..+++-++++.+++.+.|+--+ .+.+.+..++.-+++.+.|++
T Consensus       219 SfSK~~~l~GlRiG~~i~~~~~~~~l~~~----~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~  291 (366)
T PRK01533        219 TFSKAYGLASFRVGYAVGHEELIEKLNVV----RLPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKE  291 (366)
T ss_pred             CchHHhcChHHHHhHHhCCHHHHHHHHHh----cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6899999 789999999999999988643    2457788888888888884210 112233333444444454444

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=91.32  E-value=0.37  Score=41.89  Aligned_cols=72  Identities=11%  Similarity=0.107  Sum_probs=46.4

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH--hh-hhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL--ET-ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~--~~-~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++|.+| .|+-+|.+++++++.+.+...    ...++.+.....++.+.|+.-  +. +...+++++.-+++.+.|+++
T Consensus       211 S~SK~~~l~GlRlG~~i~~~~~~~~l~~~----~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  286 (354)
T PRK04635        211 TLSKAFALAGARCGFTLANEELIEILMRV----IAPYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMY  286 (354)
T ss_pred             chHHHhhhhHHHHhhhhCCHHHHHHHHhh----cCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            7999998 688889999999999887532    123455556666666666421  11 123344555567777777654

>PRK07681 aspartate aminotransferase; Provisional

Probab=91.27  E-value=0.52  Score=41.69  Aligned_cols=75  Identities=16%  Similarity=0.115  Sum_probs=47.8

Q ss_pred             hccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         147 VTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       147 ~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      -+|||.++ .|+-+|.+++++++.+.+...  ....+++.+.++..++.+.|+.-.+  +...+.+++.-+++.+.|++.
T Consensus       235 ~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~--~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  312 (399)
T PRK07681        235 NSLSKSYSLAGSRIGYMIGNEEIVRALTQF--KSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF  312 (399)
T ss_pred             eecccccCCccceeEEEecCHHHHHHHHHH--HhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            37899998 789999999999999888643  1123455666666666666643111  123444556666666666653

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=91.26  E-value=6.2  Score=35.95  Aligned_cols=146  Identities=14%  Similarity=0.055  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchh----hhhcCCC-
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWA----FQLQGDD-  141 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~----~~~~g~~-  141 (224)
                      +++|++.|..  .+..+++.+.+|=.....|-.+.+...+++++++        +.=|---.|..+|-    ..+.+.. 
T Consensus       163 ~d~Le~~I~~--~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i  240 (460)
T PRK13237        163 LDKLQALIDE--VGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSI  240 (460)
T ss_pred             HHHHHHHhcc--ccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcH
Confidence            5667777752  2345565555554334433356777788888888        10000000100000    0011100 


Q ss_pred             --------CCCchhccc--ccccCCccc-ccce-ecHHHHHhhhcCC--cccccCCCCcHH-HHHHHHHHHHHHhhhhHH
Q psy6205         142 --------IIPDIVTVG--KPMGNGHPV-AAVI-TTKEIAKSFQETG--VEYFNTYGGNPV-SCAVANAVMEVLETENLR  206 (224)
Q Consensus       142 --------v~pDi~~~~--K~l~~G~p~-~av~-~~~~i~~~~~~~~--~~~~~T~~~~p~-~~aaa~a~l~~~~~~~l~  206 (224)
                              ---|++|||  |.++  .|. |+++ .++++++.+...-  ..-+.||+|-.. -++|.--.|+...++++.
T Consensus       241 ~ei~~e~~s~aD~~t~S~~K~~~--~~~GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~  318 (460)
T PRK13237        241 KEIVHEMFSYADGCTMSGKKDCL--VNIGGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYI  318 (460)
T ss_pred             hHHhhhccCcCcEEEEeCCCCCC--CCCceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHH
Confidence                    135888775  4443  233 2233 3667777665431  122358887544 222222245555555666


Q ss_pred             HHHHHHHHHHHHhhhhcC
Q psy6205         207 EHALDVGNQLHTPKKENN  224 (224)
Q Consensus       207 ~~~~~~g~~l~~~l~~l~  224 (224)
                      ++.-+..++|.+.|++.|
T Consensus       319 ~~ri~~~~~l~~~L~~~G  336 (460)
T PRK13237        319 EHRVGQVRYLGEKLLAAG  336 (460)
T ss_pred             HHHHHHHHHHHHHHHHCC
Confidence            666666788888887654

>PRK09148 aminotransferase; Validated

Probab=91.22  E-value=0.45  Score=42.26  Aligned_cols=75  Identities=12%  Similarity=0.167  Sum_probs=49.1

Q ss_pred             hccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         147 VTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       147 ~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      -+|||.++ -|+=+|.+++++++.+.+...  ....+++.++++..++.+.|+--++  +.+.+.+++.-+++.+.|+++
T Consensus       234 ~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~--~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~  311 (405)
T PRK09148        234 TSMSKTFSMAGWRMGFAVGNERLIAALTRV--KSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRA  311 (405)
T ss_pred             eccccccCCcchheeeeeCCHHHHHHHHHH--HHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            36899998 789999999999999888642  1223455566776766666642111  234455566666677766653

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=91.19  E-value=1.7  Score=39.20  Aligned_cols=43  Identities=19%  Similarity=0.183  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEcc-ccCCCCcccCCHHHHHHHHHH
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAES-LQSCGGQIIPPANYLREVYKH  120 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Ep-v~~~~G~~~~~~~~l~~~~~~  120 (224)
                      +++|++.+..  ...+++++|+++- .-..+| .+.+.+.+++++++
T Consensus       138 ~e~Le~~I~~--~~~~~~~~I~v~~p~N~~gG-~~~s~~~l~~i~ei  181 (431)
T cd00617         138 VAKLEKLIDE--VGAENIPYIVLTITNNTAGG-QPVSMANLREVREL  181 (431)
T ss_pred             HHHHHHHhCc--ccCCCccEEEEECCcCCCCC-ccCCHHHHHHHHHH
Confidence            5666666642  1234678888872 222235 46678888888888

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=91.14  E-value=1.4  Score=39.04  Aligned_cols=119  Identities=13%  Similarity=0.054  Sum_probs=68.3

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchh--cccccccC--Cccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN--GHPVAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~--G~p~~a  161 (224)
                      ++.+|++|....-.|.+.+.+...+.+++.     |-.-+ .++. .  +..+.  .-.|++  +++|-++|  ++-.|+
T Consensus       136 ~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~-~~~~-~--~~pl~--~gaDivv~S~sK~l~G~~~~~~G~  209 (382)
T TIGR02080       136 KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTF-LSPA-L--QNPLA--LGADLVLHSCTKYLNGHSDVIAGA  209 (382)
T ss_pred             CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCC-cccc-c--CCchh--hCCCEEEeecceeccCCCCceeEE
Confidence            467888886666677777766665555554     11111 1111 0  11111  235776  58998875  355676


Q ss_pred             cee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q psy6205         162 VIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLH  217 (224)
Q Consensus       162 v~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~  217 (224)
                      +++ ++++.+.+...  ....+...+|+.+..++..|+.|..  +...+++..+.++|.
T Consensus       210 i~~~~~~~~~~l~~~--~~~~g~~~sp~~a~l~lr~l~tl~~R~~~~~~na~~~a~~L~  266 (382)
T TIGR02080       210 VIAKDPQVAEELAWW--ANNLGVTGGAFDSYLTLRGLRTLVARMRLQQRNAQAIVEYLQ  266 (382)
T ss_pred             EEeCCHHHHHHHHHH--HHccCCCCCHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHH
Confidence            666 57776666432  2223556889999999888887743  233444445544443

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=91.01  E-value=2.6  Score=36.12  Aligned_cols=122  Identities=16%  Similarity=0.023  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCC-CCc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDI-IPD  145 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v-~pD  145 (224)
                      +++|++.+......+.+..++++.-.....|.+.+.++..+.+++.        .+.++.--.. .......+  + ..|
T Consensus       132 ~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~-~~~~~~~~--~~~~d  208 (345)
T cd06450         132 PEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFP-EPRHLDFG--IERVD  208 (345)
T ss_pred             HHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhCh-hhHHHhcC--ccccC
Confidence            4556665543211222444444443344467777777777777776        3222110000 00000011  1 246


Q ss_pred             hh--cccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhh
Q psy6205         146 IV--TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHTPK  220 (224)
Q Consensus       146 i~--~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~~l  220 (224)
                      .+  ++.|.++++..+|.++.+                        ..+..++++.+.+   ++..++..++.++|.+.|
T Consensus       209 ~~~~s~~K~l~~p~g~g~~~~~------------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L  264 (345)
T cd06450         209 SISVDPHKYGLVPLGCSAVLVR------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELI  264 (345)
T ss_pred             EEEEchhHhhCCCcchHHHHHH------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            43  577977665656666544                        3334445555543   456777888999999888


Q ss_pred             hhc
Q psy6205         221 KEN  223 (224)
Q Consensus       221 ~~l  223 (224)
                      +++
T Consensus       265 ~~~  267 (345)
T cd06450         265 RAD  267 (345)
T ss_pred             hcC
Confidence            764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=90.94  E-value=1.4  Score=40.08  Aligned_cols=104  Identities=13%  Similarity=0.197  Sum_probs=57.0

Q ss_pred             CceEEEEccc--cCCCC--cccCCHHHHHHHHHH-----HHhCCccccccc--hh-------hhhcCCCCCCchhccc--
Q psy6205          91 RPCAFFAESL--QSCGG--QIIPPANYLREVYKH-----VQVGFGRVGTHW--WA-------FQLQGDDIIPDIVTVG--  150 (224)
Q Consensus        91 ~iaavi~Epv--~~~~G--~~~~~~~~l~~~~~~-----v~tG~GrtG~~~--~~-------~~~~g~~v~pDi~~~~--  150 (224)
                      +.++|+++-.  ....|  .+.+-++..+.+++.     |-.|+|-.+. .  |+       ++-..  .-.|++++|  
T Consensus       211 ~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~-~~~~gl~~~p~~~~~~~--~GaDiv~fSg~  287 (454)
T TIGR00474       211 NTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVD-LSRYGLPDEPTVQEVIA--AGVDLVTFSGD  287 (454)
T ss_pred             CCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCccccc-chhccCCCCcccccHhH--cCCCEEEecCc
Confidence            4666666654  33445  366777777777776     3334443321 1  10       11111  237999999  


Q ss_pred             ccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH
Q psy6205         151 KPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL  200 (224)
Q Consensus       151 K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~  200 (224)
                      |.++|-. .|+++++++..+.+...  .+.-.+.-+-+..|+-.++|..+
T Consensus       288 K~LgGp~-~G~i~g~~~~i~~l~~~--~l~r~lr~~k~~la~l~~~l~~~  334 (454)
T TIGR00474       288 KLLGGPQ-AGIIVGKKELIERLKKN--PLTRALRVDKLTLAALEATLRLY  334 (454)
T ss_pred             cccCCCe-EEEEEECHHHHHhhhhc--hhHHHHhhChHHHHHHHHHHHHH
Confidence            9997642 56688999888776543  11122222333444555555554

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PLN00144 acetylornithine transaminase

Probab=90.93  E-value=0.33  Score=42.94  Aligned_cols=20  Identities=45%  Similarity=0.961  Sum_probs=18.3

Q ss_pred             CCCCcceeeccCCceeEEEE
Q psy6205           2 ARYPLIGDVRGIGLFVGVEL   21 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~giel   21 (224)
                      ++||.+++|||.|+|.++||
T Consensus       308 ~~~~~~~~vrg~G~~~~l~l  327 (382)
T PLN00144        308 GGNPHVKEVRGVGLLVGIQL  327 (382)
T ss_pred             hhCCCceeeecCceEEEEEe
Confidence            45888999999999999999

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=90.83  E-value=1.4  Score=39.56  Aligned_cols=69  Identities=23%  Similarity=0.305  Sum_probs=42.3

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchh--cccccccC-Ccccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN-GHPVAAV  162 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~-G~p~~av  162 (224)
                      ++.+|++|......|.+.+.++..+.+++.     |-.-++ ++.   ......  .-+|++  .+.|.++| |-.+|++
T Consensus       143 ~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a-~~~---~~~p~~--~gaDivv~S~tK~l~G~g~~~gG~  216 (425)
T PRK06084        143 RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVA-TPV---LCRPFE--HGADIVVHSLTKYIGGHGTSIGGI  216 (425)
T ss_pred             CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc-ccc---cCChhh--cCCCEEEECchhcccccccceeEE
Confidence            567899998888888888866666666665     100011 221   111122  347877  68999987 5566666


Q ss_pred             eec
Q psy6205         163 ITT  165 (224)
Q Consensus       163 ~~~  165 (224)
                      ++.
T Consensus       217 v~~  219 (425)
T PRK06084        217 VVD  219 (425)
T ss_pred             EEe
Confidence            653

>PRK06207 aspartate aminotransferase; Provisional

Probab=90.77  E-value=3.8  Score=36.37  Aligned_cols=73  Identities=10%  Similarity=0.067  Sum_probs=43.4

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhh
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ++||.++ .|+-+|.+++++++.+.+...  ....+.+.+.++.+++.+.|+.-.  -++..++.++.-+++.+.|++
T Consensus       248 SfSK~~~lpGlRiG~ii~~~~l~~~~~~~--~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~  323 (405)
T PRK06207        248 GPSKTESLSGYRLGVAFGSPAIIDRMEKL--QAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRG  323 (405)
T ss_pred             cchhhccCcccceEEEEcCHHHHHHHHHH--HhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5799998 799999999999999888643  112233445556666655553200  012233444444555555544

>PLN02509 cystathionine beta-lyase

Probab=90.70  E-value=2  Score=39.19  Aligned_cols=121  Identities=12%  Similarity=0.041  Sum_probs=66.4

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchh--cccccccC-C-ccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN-G-HPVAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~-G-~p~~a  161 (224)
                      +..+|++|......|.+.+-+.+.+.+++.     |-.-++ ++. .  ....+  .-.|++  .+.|.|+| | .-.|+
T Consensus       217 ~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a-~~~-~--~~pl~--~gaDivv~S~tK~l~G~gdv~gG~  290 (464)
T PLN02509        217 QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIM-SPV-L--SRPLE--LGADIVMHSATKFIAGHSDVMAGV  290 (464)
T ss_pred             CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcc-ccc-c--CChhh--cCCcEEEecCcccccCCCccceeE
Confidence            567899998888788776666666666665     111110 111 0  11122  346876  47899986 4 33444


Q ss_pred             ceec-HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         162 VITT-KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       162 v~~~-~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +.++ +++.+.+...  ........+|..|+.++..|+.+..  .+++..+..+++.+.|+
T Consensus       291 v~~~~~~l~~~~~~~--~~~~g~~l~p~~A~l~lr~L~tL~~--R~~r~~~nA~~la~~L~  347 (464)
T PLN02509        291 LAVKGEKLAKEVYFL--QNSEGSGLAPFDCWLCLRGIKTMAL--RIEKQQENARKIAMYLS  347 (464)
T ss_pred             EEeccHHHHHHHHHH--HHhcCCCcCHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHh
Confidence            5544 4343332211  0111223588999999999998843  34444445555555444

>PRK06290 aspartate aminotransferase; Provisional

Probab=90.57  E-value=0.56  Score=41.86  Aligned_cols=75  Identities=21%  Similarity=0.162  Sum_probs=46.8

Q ss_pred             hccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         147 VTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       147 ~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      -++||.+| .|+=+|.+++++++++.+...  ....+.+.+.++..++.+.|+.-+ -+++.+++++.-+++.+.|+++
T Consensus       247 ~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~--~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  323 (410)
T PRK06290        247 HSLSKAYNMTGWRLAFVVGNELIVKAFATV--KDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV  323 (410)
T ss_pred             eechhhcCCchhheEeEEeCHHHHHHHHHH--HhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            36999997 688899999999999887642  111222223455556655554311 1235555666667777777654

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=90.53  E-value=0.33  Score=43.62  Aligned_cols=20  Identities=35%  Similarity=0.559  Sum_probs=17.8

Q ss_pred             CCCcceeeccCCceeEEEEe
Q psy6205           3 RYPLIGDVRGIGLFVGVELV   22 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv   22 (224)
                      .||.++++||.|+|+++++.
T Consensus       355 ~~~~i~~vrg~G~~~~i~~~  374 (427)
T TIGR00508       355 KNPVVKDVRVLGAIGVVEMY  374 (427)
T ss_pred             cCCCEEeEeccccEEEEEEC
Confidence            46778899999999999995

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=90.29  E-value=0.21  Score=45.49  Aligned_cols=19  Identities=37%  Similarity=0.889  Sum_probs=17.5

Q ss_pred             CCC-cceeec--cCCceeEEEE
Q psy6205           3 RYP-LIGDVR--GIGLFVGVEL   21 (224)
Q Consensus         3 ~~p-~v~~vR--g~Gl~~giel   21 (224)
                      +|| .|++||  |.|||+|+|+
T Consensus       391 ~~~~~i~~vRg~G~Glm~gie~  412 (464)
T TIGR00699       391 KYPEFIQNLRGKGRGTFIAWDT  412 (464)
T ss_pred             hCCCceeeecccCeEEEEEEec
Confidence            488 799999  9999999998

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK08068 transaminase; Reviewed

Probab=90.10  E-value=0.66  Score=40.85  Aligned_cols=75  Identities=12%  Similarity=0.010  Sum_probs=45.9

Q ss_pred             hccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         147 VTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       147 ~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      -++||.+| .|+=+|.+++++++.+.+.... .+ ...+..+....++.+.|..-.  -+.+.+++++.-+++.+.|+++
T Consensus       236 ~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~-~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~  313 (389)
T PRK08068        236 YTLSKTFNMAGWRVAFAVGNESVIEAINLLQ-DH-LFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACREI  313 (389)
T ss_pred             ecchhccCCccceeEeEecCHHHHHHHHHHH-hh-ccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            37999997 6899999999999998886431 11 122223333444444442111  1245666677777777777654

>PRK07683 aminotransferase A; Validated

Probab=90.06  E-value=0.84  Score=40.23  Aligned_cols=73  Identities=11%  Similarity=0.108  Sum_probs=45.9

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhh
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ++||.+| -|+=+|.+++++++++.+...  ......+.++++..++.+.|+.-+  -+.+.++.++.-+++.+.|++
T Consensus       230 s~SK~~~~pGlRiG~i~~~~~l~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  305 (387)
T PRK07683        230 GLSKSHSMTGWRIGFLFAPSYLAKHILKV--HQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLIS  305 (387)
T ss_pred             eccccccCccceeEEEEcCHHHHHHHHHH--HHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999 789999999999999887643  111223345566566655554211  123445556666666666654

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=89.90  E-value=2.6  Score=37.69  Aligned_cols=130  Identities=14%  Similarity=0.081  Sum_probs=80.2

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH----HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCcccccce
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH----VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPVAAVI  163 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~~av~  163 (224)
                      ++.-.|.+.-+...-|.+.|-++..+.+++.    +.=|.--.|..-.-.+.    +..|.+++|  |.|.|=..+|.+.
T Consensus       161 ~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~----l~~Df~afsgHKwl~gP~GiGvLy  236 (405)
T COG0520         161 PKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQE----LGCDFLAFSGHKWLLGPTGIGVLY  236 (405)
T ss_pred             CCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchh----cCCCEEEEcccccccCCCceEEEE
Confidence            4667788888888899999999999999888    11111001110011122    238888775  7676545578899


Q ss_pred             ecHHHHHhhhcC---C-c----c--cccCCC----------CcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhh
Q psy6205         164 TTKEIAKSFQET---G-V----E--YFNTYG----------GNPVSCAVANAVMEVLET---ENLREHALDVGNQLHTPK  220 (224)
Q Consensus       164 ~~~~i~~~~~~~---~-~----~--~~~T~~----------~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~~l  220 (224)
                      +++++.+.+.+.   + .    .  ...|+.          -|..+.....++++++++   +.+.++.+++.+++.++|
T Consensus       237 ~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L  316 (405)
T COG0520         237 VRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGL  316 (405)
T ss_pred             EchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            999999987432   0 0    0  001221          122333334456666654   568888899999999998


Q ss_pred             hhc
Q psy6205         221 KEN  223 (224)
Q Consensus       221 ~~l  223 (224)
                      +++
T Consensus       317 ~~~  319 (405)
T COG0520         317 SEL  319 (405)
T ss_pred             hcC
Confidence            865

>PRK08297 L-lysine aminotransferase; Provisional

Probab=89.69  E-value=0.4  Score=43.35  Aligned_cols=20  Identities=35%  Similarity=0.732  Sum_probs=17.6

Q ss_pred             CCCcce-eeccCCceeEEEEe
Q psy6205           3 RYPLIG-DVRGIGLFVGVELV   22 (224)
Q Consensus         3 ~~p~v~-~vRg~Gl~~gielv   22 (224)
                      +||.+. +|||.|+|.++|+.
T Consensus       368 ~~~~~~~~vrg~G~~~~i~~~  388 (443)
T PRK08297        368 EFPAVVSNVRGRGLMCAFDLP  388 (443)
T ss_pred             HCCCcceeeeccceEEEEEec
Confidence            478776 99999999999995

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=89.54  E-value=0.81  Score=40.23  Aligned_cols=74  Identities=8%  Similarity=0.060  Sum_probs=42.9

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|||.+| .|+=+|.+++++++.+.+...  ....+++..+....++.+.|..-++  +.+.+.+++.-+++.+.|+++
T Consensus       236 SfSK~~g~~GlRiG~~v~~~~li~~l~~~--~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~  312 (388)
T PRK07366        236 TLSKSYNMGGFRIGFAIGNAQLIQALRQV--KAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQI  312 (388)
T ss_pred             ecccccCCcchhheehcCCHHHHHHHHHH--HhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            7999997 789999999999999887642  1112222223333444454421111  134445556666666666543

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=89.48  E-value=1.6  Score=39.21  Aligned_cols=65  Identities=23%  Similarity=0.302  Sum_probs=42.5

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhc--ccccccC-Cccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGN-GHPV  159 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~-G~p~  159 (224)
                      ++.+|++|......|.+.+-++..+.+++.        ++.    ++   +.+..+.  .-+|+++  +.|.++| |-++
T Consensus       148 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a----~~---~~~~pl~--~gaDivv~S~tK~lgg~~~~~  218 (427)
T PRK05994        148 RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLA----SP---YLIRPIE--HGADIVVHSLTKFLGGHGNSM  218 (427)
T ss_pred             CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcc----cc---ccCCccc--cCCcEEEEcCccccCCCCCcE
Confidence            678999998888888888766666666665        221    12   1122232  5589876  7899986 4566


Q ss_pred             cccee
Q psy6205         160 AAVIT  164 (224)
Q Consensus       160 ~av~~  164 (224)
                      |+++.
T Consensus       219 gG~v~  223 (427)
T PRK05994        219 GGIIV  223 (427)
T ss_pred             EEEEE
Confidence            76555

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=89.35  E-value=0.94  Score=39.14  Aligned_cols=71  Identities=14%  Similarity=0.205  Sum_probs=45.3

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhhh
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ++||.++ .|+-+|.+++++++.+.+...    ..+++.+.++.+++.+.|+-.+. .+...+..+.-+.+.+.|++
T Consensus       201 S~SK~~~l~GlRiG~iv~~~~~i~~~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  273 (337)
T PRK03967        201 TFSKAFGLAGIRAGYAIANEEIIDALYRI----KPPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGE  273 (337)
T ss_pred             cchHhhcchhhhheeeecCHHHHHHHHhh----cCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6899999 889999999999999888643    13445677777777777753221 11222333333445555543

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=89.33  E-value=4  Score=35.99  Aligned_cols=119  Identities=17%  Similarity=0.166  Sum_probs=67.5

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc----ccccCCcc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG----KPMGNGHP  158 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~----K~l~~G~p  158 (224)
                      ++.+|+  |+. ..|...+-+++.+.+++.        .+ ++|.+    +.-...|  ..-|+.+||    |.++.|..
T Consensus       119 ~tk~Ii--p~~-~~G~~~d~~~I~~la~~~~i~vIeDaa~-~~g~~----~~~~~~g--~~~~~~~fSf~~~K~l~~g~~  188 (376)
T TIGR02379       119 RTKAIV--PVH-YAGVACDMDTIMALANKHQLFVIEDAAQ-GVMST----YKGRALG--SIGHLGTFSFHETKNYTSGGE  188 (376)
T ss_pred             CceEEE--EeC-CCCCccCHHHHHHHHHHCCCEEEEECcc-ccCCc----cCCcccC--CCCCEEEEeCCCCCcCcccCC
Confidence            455565  432 246556656666666665        22 23221    1111222  334888898    99987766


Q ss_pred             cccceec-HHHHHhhhcC---Cc----------------ccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy6205         159 VAAVITT-KEIAKSFQET---GV----------------EYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHT  218 (224)
Q Consensus       159 ~~av~~~-~~i~~~~~~~---~~----------------~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~  218 (224)
                      .|+++++ +++++.+...   +.                ..++.|-.+.+.+|.+++.|+.+++  +.++-+++.++..+
T Consensus       189 gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~--~~~~r~~~~~~y~~  266 (376)
T TIGR02379       189 GGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADR--INQDRLATWQLYQD  266 (376)
T ss_pred             ceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHH
Confidence            7777775 7777766521   10                0223455567888888888888865  44444555555555


Q ss_pred             hhh
Q psy6205         219 PKK  221 (224)
Q Consensus       219 ~l~  221 (224)
                      .|+
T Consensus       267 ~L~  269 (376)
T TIGR02379       267 ALK  269 (376)
T ss_pred             Hhc
Confidence            543

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=89.32  E-value=2.8  Score=37.43  Aligned_cols=121  Identities=12%  Similarity=0.028  Sum_probs=65.0

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchhc--ccccccC-C-ccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGN-G-HPVAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~-G-~p~~a  161 (224)
                      +..+|++|-...-.|.+..-++..+.+++.     |-.-+ -++. .  +.-..  .-.|+++  ..|.++| | .-.|+
T Consensus       145 ~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~-a~~~-~--~~pl~--~gaDivv~S~tK~l~g~~~~~~G~  218 (405)
T PRK08776        145 SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTF-LSPA-L--QKPLE--FGADLVLHSTTKYINGHSDVVGGA  218 (405)
T ss_pred             CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCC-cccc-c--CCccc--ccCCEEEecCceeecCCCCceEEE
Confidence            466788886555567666555555555554     00001 0111 0  01111  2257764  5798875 3 55676


Q ss_pred             cee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         162 VIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       162 v~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +++ ++++.+.+...  .....+..+|+.+.+.+..++.++.  ..++..++...+.+.|+
T Consensus       219 vv~~~~~l~~~l~~~--~~~~g~~~s~~~a~l~~~gl~tl~~--r~~~~~~na~~la~~L~  275 (405)
T PRK08776        219 VVARDAELHQQLVWW--ANALGLTGSPFDAFLTLRGLRTLDA--RLRVHQENADAIAALLD  275 (405)
T ss_pred             EEeCCHHHHHHHHHH--HHhcCCCCCHHHHHHHHhhhCcHHH--HHHHHHHHHHHHHHHHH
Confidence            766 56776666432  1122345789999999888887743  33344444444444443

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=89.31  E-value=0.88  Score=39.81  Aligned_cols=71  Identities=21%  Similarity=0.162  Sum_probs=43.6

Q ss_pred             ccccccc-CCccccccee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhh
Q psy6205         148 TVGKPMG-NGHPVAAVIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +|||.++ .|+.+|.+++ ++++.+.+...    ...++-|.++.+++.+.|+.-+ -++..+..++.-+++.+.|++
T Consensus       228 SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~  301 (371)
T PRK05166        228 TFSKAYGLAGLRVGYGLVSDPELVGLLDRV----RTPFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAE  301 (371)
T ss_pred             echHhhhcchhheeeeecCCHHHHHHHHHh----ccCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999 8999999765 78888877532    1244557777666666664210 012233344444556666654

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=88.80  E-value=2.3  Score=37.72  Aligned_cols=121  Identities=14%  Similarity=0.051  Sum_probs=64.4

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH----H-HhCCccccccchhhhhcCCCCCCchh--cccccccC-C-ccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH----V-QVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN-G-HPVAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----v-~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~-G-~p~~a  161 (224)
                      +..+|++|......|.+.+-+.+.+.+++.    | =.-+ .++. .  .....  .-.|++  .+.|.++| | .-.|+
T Consensus       146 ~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~-a~~~-~--~~p~~--~gaDivv~S~sK~l~g~~~~~gG~  219 (388)
T PRK07811        146 RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTF-ASPY-L--QQPLA--LGADVVVHSTTKYIGGHSDVVGGA  219 (388)
T ss_pred             CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCC-Cccc-c--CCchh--hCCcEEEecCceeecCCCCcEEEE
Confidence            567899986665567666666666666655    1 0001 1111 0  11111  336766  46899986 3 34566


Q ss_pred             ceec-HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         162 VITT-KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       162 v~~~-~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      ++++ +++.+.+...  ........+|..+..++..|+.+..  ..++..++.+.+.+.|+
T Consensus       220 vv~~~~~l~~~~~~~--~~~~g~~~s~~~a~l~~~~L~tl~~--R~~~~~~na~~la~~L~  276 (388)
T PRK07811        220 LVTNDEELDEAFAFL--QNGAGAVPGPFDAYLTLRGLKTLAV--RMDRHSENAEAVAEFLA  276 (388)
T ss_pred             EEECCHHHHHHHHHH--HHhcCCCCCHHHHHHHHhccCcHHH--HHHHHHHHHHHHHHHHH
Confidence            6764 6666654321  1112233467777777776666532  34444455555555554

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=88.69  E-value=9.8  Score=35.28  Aligned_cols=143  Identities=13%  Similarity=0.141  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhh---cCCCC-
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQL---QGDDI-  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~---~g~~v-  142 (224)
                      .++|++.++...+.+..+.+|+.-..-.+-|.+-|-++.-+.+++.        .+.|.     .+..-++   +. ++ 
T Consensus       249 ~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~-----~~~~~~~r~~l~-gle  322 (522)
T TIGR03799       249 VDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGA-----TLLSNTYRHLLK-GIE  322 (522)
T ss_pred             HHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhH-----HHhCHHHHHHhc-Cch
Confidence            5667766654333344556666544344678899988888888886        33322     1111111   11 25 


Q ss_pred             CCchhccc--ccccCCcccccceecH-HHHHhhhcCC-c-------cc-ccCCCCcHHHHH-HHHHHHHHHhh---hhHH
Q psy6205         143 IPDIVTVG--KPMGNGHPVAAVITTK-EIAKSFQETG-V-------EY-FNTYGGNPVSCA-VANAVMEVLET---ENLR  206 (224)
Q Consensus       143 ~pDi~~~~--K~l~~G~p~~av~~~~-~i~~~~~~~~-~-------~~-~~T~~~~p~~~a-aa~a~l~~~~~---~~l~  206 (224)
                      ..|.++++  |-+.+-+..|+++.++ +..+.+.... .       .+ ..|+.+..-..+ ..-++|+.+.+   +.++
T Consensus       323 ~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii  402 (522)
T TIGR03799       323 RADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLI  402 (522)
T ss_pred             hCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHH
Confidence            57888764  6665557888888864 5555443310 0       00 023333322222 35577777754   4677


Q ss_pred             HHHHHHHHHHHHhhhhc
Q psy6205         207 EHALDVGNQLHTPKKEN  223 (224)
Q Consensus       207 ~~~~~~g~~l~~~l~~l  223 (224)
                      ++..++.++|.+.|++.
T Consensus       403 ~~~~~la~~l~~~L~~~  419 (522)
T TIGR03799       403 DQSIEKAKYFADLIQQQ  419 (522)
T ss_pred             HHHHHHHHHHHHHHhhC
Confidence            77888999999988753

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=88.66  E-value=0.91  Score=40.36  Aligned_cols=20  Identities=25%  Similarity=0.280  Sum_probs=16.8

Q ss_pred             CCCcceeeccCCceeEEEEee
Q psy6205           3 RYPLIGDVRGIGLFVGVELVT   23 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~   23 (224)
                      +++ +.+|||.|+|++||+..
T Consensus       320 ~~~-i~~vrG~Glm~~i~l~~  339 (395)
T PRK03715        320 ERG-LEGERGEGLLRALLLGK  339 (395)
T ss_pred             cCC-cCeEEcceeEEEEEecC
Confidence            355 78999999999999964

>PRK07908 hypothetical protein; Provisional

Probab=88.29  E-value=1.8  Score=37.42  Aligned_cols=71  Identities=6%  Similarity=0.048  Sum_probs=44.1

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHH--HHh-hhhHHHHHHHHHHHHHHhhhh
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVME--VLE-TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~--~~~-~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +++|.++ .|+-+|.+++++++.+.+....    ..+..+++..+++.+.++  ..+ -+++.++.++.-+++.+.|++
T Consensus       201 S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~  275 (349)
T PRK07908        201 SLTKTWSLAGLRVGYALGAPDVLARLTRGR----AHWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRA  275 (349)
T ss_pred             ecccccCCccceeeeeecCHHHHHHHHhcC----CCCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5799998 7899999999999998876431    123444555554444433  111 123455566666666676655

>PRK07582 cystathionine gamma-lyase; Validated

Probab=87.62  E-value=2.7  Score=36.89  Aligned_cols=121  Identities=11%  Similarity=-0.028  Sum_probs=67.4

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchh--cccccccC--Cccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN--GHPVAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~--G~p~~a  161 (224)
                      ++..|++|......|.+.+-+.+.+.+++.     |-.-+. +.   ..+....  +..|++  ++.|.++|  |+.+|+
T Consensus       132 ~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~-~~---~~~~p~~--~g~Divv~S~sK~l~G~~g~~~G~  205 (366)
T PRK07582        132 GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTA-TP---LGQRPLE--LGADLVVASDTKALTGHSDLLLGY  205 (366)
T ss_pred             CceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCC-Cc---cccCchh--cCCcEEEecccccccCCCCeeEEE
Confidence            566788886555567666666666666665     100010 00   0111111  335876  47899976  466787


Q ss_pred             cee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         162 VIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       162 v~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +++ ++++.+.+... +. ..+-..+|..+..++..|+.+.  -..++..++...+.+.|+
T Consensus       206 v~~~~~~l~~~l~~~-~~-~~g~~~~~~~a~l~~r~l~tl~--~R~~~~~~na~~la~~L~  262 (366)
T PRK07582        206 VAGRDPELMAAVERW-RL-LAGAIPGPFEAWLAHRSLGTLG--LRFARQCANALAVAELLA  262 (366)
T ss_pred             EEcCcHHHHHHHHHH-HH-HhCCCCCHHHHHHHHhccccHH--HHHHHHHHHHHHHHHHHH
Confidence            787 47777766532 11 1233456888887777777653  123444455555555554

>PRK07050 cystathionine beta-lyase; Provisional

Probab=87.44  E-value=2.1  Score=38.01  Aligned_cols=55  Identities=20%  Similarity=0.207  Sum_probs=32.0

Q ss_pred             Cchh--cccccccCC--ccccccee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH
Q psy6205         144 PDIV--TVGKPMGNG--HPVAAVIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL  200 (224)
Q Consensus       144 pDi~--~~~K~l~~G--~p~~av~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~  200 (224)
                      .|++  .+.|.++|+  .+.|++++ ++++++.+...  .....-..+|..+-.++..|+-+
T Consensus       202 aDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~--~~~~G~~~~~~~a~l~lr~l~tl  261 (394)
T PRK07050        202 VDISVQALTKYQSGGSDVLMGATITADAELHAKLKLA--RMRLGIGVSADDCSLVLRGLPSL  261 (394)
T ss_pred             CeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHH--HHhcCCCCCHHHHHHHHcCCCcH
Confidence            5876  489999864  67887777 57777766432  11123345566655554434333

>PRK05968 hypothetical protein; Provisional

Probab=87.36  E-value=1.8  Score=38.41  Aligned_cols=123  Identities=14%  Similarity=0.077  Sum_probs=65.1

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchh--cccccccC-C-ccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN-G-HPVAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~-G-~p~~a  161 (224)
                      +..+|++|-..+..+.+.+-+.+.+.+++.     |-.-+ -++. ...--.+|    .|++  ++.|.++| | .-.|+
T Consensus       147 ~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~-a~~~-~~~p~~~g----~Divv~S~tK~l~g~~~~~gG~  220 (389)
T PRK05968        147 GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSW-ASPV-FQRPITLG----VDLVIHSASKYLGGHSDTVAGV  220 (389)
T ss_pred             cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC-cchh-ccCchhcC----CcEEEeeccccccCCCCeEEEE
Confidence            345788886555544444444444444443     11101 0110 00000123    4766  47899986 3 33566


Q ss_pred             ceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         162 VITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       162 v~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +++++++++.+......... ...+|..++.++..|+.+.  ...++-.++.+++.+.|++
T Consensus       221 i~~~~~~~~~l~~~~~~~~g-~~~~~~~A~~~l~~L~tl~--~r~~~~~~~a~~la~~L~~  278 (389)
T PRK05968        221 VAGSKEHIARINAEAYPYLG-AKLSPFEAWLLLRGLRTLP--LRMKAHEASALEIARRLKA  278 (389)
T ss_pred             EEECHHHHHHHHHHHHHhCC-CCCChHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHHh
Confidence            77888888776532111111 3457888888888887772  2344444456666666654

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=87.33  E-value=3.5  Score=36.53  Aligned_cols=120  Identities=14%  Similarity=0.057  Sum_probs=70.7

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchhc--ccccccC--Cccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGN--GHPVAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~--G~p~~a  161 (224)
                      +..+|++|....-.|.+.+.++..+.+++.     |-.-+ .++. .  .....  .-.|+++  +.|-++|  +...|+
T Consensus       137 ~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay-~~~~-~--~~pl~--~gaDivv~S~tK~l~G~~d~~~G~  210 (386)
T PRK08045        137 KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTF-LSPA-L--QNPLA--LGADLVLHSCTKYLNGHSDVVAGV  210 (386)
T ss_pred             CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCC-Cccc-c--CCchh--hCCCEEEeecceeccCCCCceeEE
Confidence            567888887666677777766666665554     10001 1111 1  11121  2358764  7999975  355677


Q ss_pred             cee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHH
Q psy6205         162 VIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHT  218 (224)
Q Consensus       162 v~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~  218 (224)
                      +++ ++++.+.+...  ....+...+|..+-.++..|+-+.  -+...+++..+.++|.+
T Consensus       211 vi~~~~~~~~~l~~~--~~~~g~~~~p~~~~l~~rgl~tl~~R~~~~~~na~~la~~L~~  268 (386)
T PRK08045        211 VIAKDPDVVTELAWW--ANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQT  268 (386)
T ss_pred             EEeCcHHHHHHHHHH--HHhcCCCCCHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            766 46676655422  122345578999888888888774  24566666666666654

>PRK06107 aspartate aminotransferase; Provisional

Probab=87.27  E-value=6.3  Score=34.86  Aligned_cols=73  Identities=10%  Similarity=0.022  Sum_probs=47.3

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhh
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      .|+|.++ .|+=+|.+++++++.+.+...  ....+...++++.+++.+.|+.-+  -+...++.++.-+.+.+.|++
T Consensus       238 S~SK~~~~pGlRiG~~~~~~~~~~~~~~~--~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~  313 (402)
T PRK06107        238 GVSKTYAMTGWRIGYAAGPADLIAAINKL--QSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNA  313 (402)
T ss_pred             ccchhhcCcccceeeeecCHHHHHHHHHH--HHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4699998 789999999999999887643  222455667777777777774100  012334455555556666654

>KOG1402|consensus

Probab=87.00  E-value=1.3  Score=38.43  Aligned_cols=24  Identities=25%  Similarity=0.607  Sum_probs=18.6

Q ss_pred             CCc-ceeeccCCceeEEEEeecCCC
Q psy6205           4 YPL-IGDVRGIGLFVGVELVTCRKQ   27 (224)
Q Consensus         4 ~p~-v~~vRg~Gl~~gielv~~~~t   27 (224)
                      .|. |.+|||+||+.+|++...+.+
T Consensus       351 ~p~~v~~VRGrGl~~ai~i~~~~~~  375 (427)
T KOG1402|consen  351 FPHVVKEVRGRGLLNAIVINPSKTS  375 (427)
T ss_pred             ccchhheeeccceEEEEEecccccc
Confidence            353 689999999999999754443

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=86.91  E-value=1.5  Score=38.20  Aligned_cols=130  Identities=11%  Similarity=0.033  Sum_probs=69.3

Q ss_pred             CCceEEEEccccCCCCcccCCHH---HHHHHHHH--------HHhCCccccccchhh-hh--cCCCCCCchh--cccccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPAN---YLREVYKH--------VQVGFGRVGTHWWAF-QL--QGDDIIPDIV--TVGKPM  153 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~---~l~~~~~~--------v~tG~GrtG~~~~~~-~~--~g~~v~pDi~--~~~K~l  153 (224)
                      ++..++++...+.-.|...+..+   +++.+++.        +...|...+. .... ..  .+.....-|+  +|+|.+
T Consensus       141 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~~vi~~~S~SK~~  219 (357)
T TIGR03539       141 VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGR-PVSILDPRVCGGDHTGLLAVHSLSKRS  219 (357)
T ss_pred             cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCC-CccceecccCCCccccEEEEecccccc
Confidence            46678888766666776665543   33333332        3333322222 1110 00  0100111233  799998


Q ss_pred             c-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhh
Q psy6205         154 G-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       154 ~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      + .|+=+|.+++++++.+.+...  ....+++.++++..++.+.|+.-. .++..++.++.-+++.+.|++
T Consensus       220 ~~~G~R~G~~i~~~~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~  288 (357)
T TIGR03539       220 NLAGYRAGFVAGDPALVAELLTV--RKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEK  288 (357)
T ss_pred             CCCceeEEEEecCHHHHHHHHHH--HhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 578889999999998887542  122345566777676666664211 123344455566666666655

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=86.56  E-value=1.1  Score=40.32  Aligned_cols=22  Identities=14%  Similarity=0.157  Sum_probs=19.3

Q ss_pred             CCCcceeeccCCceeEEEEeec
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTC   24 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~   24 (224)
                      +||.+.++||.|+|.++|+..+
T Consensus       341 ~~~~~~~vrg~G~~~~i~l~~~  362 (426)
T PRK00062        341 KAGIPLTVNRVGSMFGLFFTDE  362 (426)
T ss_pred             HcCCceEEEEecceEEEEEecC
Confidence            4788899999999999999754

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=86.38  E-value=1.2  Score=39.67  Aligned_cols=75  Identities=20%  Similarity=0.237  Sum_probs=40.2

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCC-CccccCCCCCCCCCChhHHHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPC-PDVYRGKYPADKYPDEDLGVKYAQDVQDL   81 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~-P~~yr~~~~~~~~~~~~~~~~~~~~l~~~   81 (224)
                      +++.+.++||.|+|.++|+......      .+..+.......++...+. ++..|-.++...  +++..++.++.|++.
T Consensus       325 ~~~~~~~vrg~Gl~~~~~l~~~~~~------~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~~--t~~~i~~~~~~l~~~  396 (406)
T PRK12381        325 RYGLFSEIRGLGLLIGCVLNAEYAG------KAKQISQEAAKAGVMVLIAGPNVVRFAPALNI--SEEEITTGLDRFARA  396 (406)
T ss_pred             hCCCEEEEecCeEEEEEEecCchhh------HHHHHHHHHHHCCcEEeeCCCCEEEEeCCccC--CHHHHHHHHHHHHHH
Confidence            3677899999999999999652110      1111222222223333222 233343222211  256677777888877


Q ss_pred             HHHH
Q psy6205          82 IEAM   85 (224)
Q Consensus        82 ~~~~   85 (224)
                      ++.+
T Consensus       397 l~~~  400 (406)
T PRK12381        397 CERF  400 (406)
T ss_pred             HHHH
Confidence            7665

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=86.08  E-value=1.6  Score=37.98  Aligned_cols=74  Identities=12%  Similarity=0.002  Sum_probs=46.3

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|+|.++ .|+=+|.+++++++.+.+...  ....++..+++..+++.+.|+.-+ .+...+..++.-+.+.+.|++.
T Consensus       220 S~SK~~~~~GlRiG~i~~~~~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  295 (364)
T PRK07865        220 SLSKQSNLAGYRAGFVAGDPALVAELLEV--RKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAA  295 (364)
T ss_pred             echhccCCCceeeEEEecCHHHHHHHHHH--HHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            6999996 578888899999998887642  112334456676666666664311 1233445556666666666543

>PRK12566 glycine dehydrogenase; Provisional

Probab=85.53  E-value=8.5  Score=38.19  Aligned_cols=140  Identities=14%  Similarity=0.058  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH----HHhCCccccccchh-hhhcCCCCCCchhcc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH----VQVGFGRVGTHWWA-FQLQGDDIIPDIVTV  149 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----v~tG~GrtG~~~~~-~~~~g~~v~pDi~~~  149 (224)
                      +++|++.++   ++.++++||++.-....|+...+-++..+.+++.    +.-|---.+...+. -..    +-.|++++
T Consensus       628 le~L~a~I~---~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~----~GADi~~~  700 (954)
T PRK12566        628 LDDLKAKAA---AAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPAD----IGADVSHM  700 (954)
T ss_pred             HHHHHHHhh---ccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhh----cCCCEEEe
Confidence            566776665   2457888888764333333333334444555444    00110000000000 112    23699877


Q ss_pred             c--cccc----CCcc-cccceecHHHHHhhhcCC-----------cccccCCCCcHHHHHHHHHHHHHHhhhhHHHH---
Q psy6205         150 G--KPMG----NGHP-VAAVITTKEIAKSFQETG-----------VEYFNTYGGNPVSCAVANAVMEVLETENLREH---  208 (224)
Q Consensus       150 ~--K~l~----~G~p-~~av~~~~~i~~~~~~~~-----------~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~---  208 (224)
                      .  |.++    +|.| +|.+.+++++...+.+..           .....+++++.+-.-++..-|..+=.+ +.+.   
T Consensus       701 s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~  779 (954)
T PRK12566        701 NLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQ-LADASEV  779 (954)
T ss_pred             cCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCHH-HHHHHHH
Confidence            5  8775    4444 666677776665554211           112245566666666666666666434 3332   


Q ss_pred             HHHHHHHHHHhhhh
Q psy6205         209 ALDVGNQLHTPKKE  222 (224)
Q Consensus       209 ~~~~g~~l~~~l~~  222 (224)
                      +..+..|+.++|++
T Consensus       780 ailnAnYla~rL~~  793 (954)
T PRK12566        780 AILSANYLANQLGG  793 (954)
T ss_pred             HHHHHHHHHHHhHh
Confidence            24578888888864

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=85.46  E-value=8.6  Score=33.84  Aligned_cols=76  Identities=17%  Similarity=0.212  Sum_probs=46.3

Q ss_pred             chhccc--ccccCCccccccee-cHHHHHhhhc---CCc-------------------ccccCCCCcHHHHHHHHHHHHH
Q psy6205         145 DIVTVG--KPMGNGHPVAAVIT-TKEIAKSFQE---TGV-------------------EYFNTYGGNPVSCAVANAVMEV  199 (224)
Q Consensus       145 Di~~~~--K~l~~G~p~~av~~-~~~i~~~~~~---~~~-------------------~~~~T~~~~p~~~aaa~a~l~~  199 (224)
                      |+..|+  |.+++| .-|++++ ++++.+.+..   .+.                   ..+..+..+.+.+|.++..|+.
T Consensus       174 ~~~Sf~~~K~l~~g-~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~  252 (379)
T PRK11658        174 AIFSFHAIKNITCA-EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAK  252 (379)
T ss_pred             EEEeCCCCCcCccc-CceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHH
Confidence            555554  778765 3344565 3777665532   110                   0112344566777777777776


Q ss_pred             HhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         200 LETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       200 ~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++  ..++-+++.+++.+.|+++
T Consensus       253 l~~--~~~~r~~~a~~~~~~L~~~  274 (379)
T PRK11658        253 LEA--LNARRREIAARYLQALADL  274 (379)
T ss_pred             HHH--HHHHHHHHHHHHHHHhcCC
Confidence            654  6788888888888888754

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=85.04  E-value=0.57  Score=39.94  Aligned_cols=146  Identities=18%  Similarity=0.163  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-HHhCCc--cccccch-h-------hhhcCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-VQVGFG--RVGTHWW-A-------FQLQGDDII  143 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-v~tG~G--rtG~~~~-~-------~~~~g~~v~  143 (224)
                      +++|++.++....+..++++|.+|--.-..|-.+.+.+.++.+.++ -..|.-  --|.-+| +       ...+-  --
T Consensus       108 ~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~--~~  185 (290)
T PF01212_consen  108 PEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIA--AG  185 (290)
T ss_dssp             HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH--TT
T ss_pred             HHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh--hh
Confidence            6778888876544556899999997666545567788899999998 111110  0011000 0       11111  23


Q ss_pred             Cchhc--ccccccCCccccc-ceecHHHHHhhhcCCccccc--CCCCcHHHHHH-HHHHHHHHhh-hhHHHHHHHHHHHH
Q psy6205         144 PDIVT--VGKPMGNGHPVAA-VITTKEIAKSFQETGVEYFN--TYGGNPVSCAV-ANAVMEVLET-ENLREHALDVGNQL  216 (224)
Q Consensus       144 pDi~~--~~K~l~~G~p~~a-v~~~~~i~~~~~~~~~~~~~--T~~~~p~~~aa-a~a~l~~~~~-~~l~~~~~~~g~~l  216 (224)
                      -|+++  +.|.++  .|.++ ++++++..+........+++  .-.|-+.++.. -.+.+..++. .....+..++.++|
T Consensus       186 ~D~v~~~~tK~~g--~~~Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~l~~~~~~~~~~~~~A~~L  263 (290)
T PF01212_consen  186 ADSVSFGGTKNGG--APGGAVLAGNKEFIAKARRQRKRLGGGMRQAGVLAAAELYQFAALRALELWLERARHANAMAKRL  263 (290)
T ss_dssp             SSEEEEETTSTT---SSSEEEEEESHHHHHHHHHHHHHHTHHHHHTTHHHHHHHHHHHHHCHEECSHHHHHCHHHHHHCH
T ss_pred             CCEEEEEEEcccc--cccceEEEechHHHHHHHHHHHHhccCeeecceeeeechhhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            57665  566554  33333 66688854433211011111  11221222000 0123333332 35677788899999


Q ss_pred             HHhhhhcC
Q psy6205         217 HTPKKENN  224 (224)
Q Consensus       217 ~~~l~~l~  224 (224)
                      .+.|++++
T Consensus       264 a~~l~~~~  271 (290)
T PF01212_consen  264 AAGLEALG  271 (290)
T ss_dssp             HHCHHEEC
T ss_pred             HHHHHHCC
Confidence            99988764

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=84.86  E-value=4  Score=35.76  Aligned_cols=75  Identities=15%  Similarity=0.104  Sum_probs=43.4

Q ss_pred             Cchh--cccccccC--Ccccccceec-HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy6205         144 PDIV--TVGKPMGN--GHPVAAVITT-KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHT  218 (224)
Q Consensus       144 pDi~--~~~K~l~~--G~p~~av~~~-~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~  218 (224)
                      .||+  .++|.++|  +.-.|+++++ +++.+.+...  ....+...+|..+..++..|+.+..  ..++.+++.+.+.+
T Consensus       188 ~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~--~~~~g~~~s~~~a~l~~~~l~tl~~--r~~~~~~~a~~l~~  263 (366)
T PRK08247        188 ADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYY--QNAAGAVLSPFDSWLLIRGMKTLAL--RMRQHEENAKAIAA  263 (366)
T ss_pred             CcEEEeecceeccCCCceeeeEEecChHHHHHHHHHH--HHhcCCCCChHHHHHHHhccCcHHH--HHHHHHHHHHHHHH
Confidence            5665  48999986  2456667775 6676665422  1223445678877777777765532  22333445555555


Q ss_pred             hhhh
Q psy6205         219 PKKE  222 (224)
Q Consensus       219 ~l~~  222 (224)
                      .|++
T Consensus       264 ~L~~  267 (366)
T PRK08247        264 FLNE  267 (366)
T ss_pred             HHHh
Confidence            5543

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=84.83  E-value=9.4  Score=34.88  Aligned_cols=80  Identities=26%  Similarity=0.256  Sum_probs=48.4

Q ss_pred             Cchhcc--ccccc-----CCcccccceecHHHHHhhhcC-----Cccc------------ccCCCCcHHHHHHHHHHHHH
Q psy6205         144 PDIVTV--GKPMG-----NGHPVAAVITTKEIAKSFQET-----GVEY------------FNTYGGNPVSCAVANAVMEV  199 (224)
Q Consensus       144 pDi~~~--~K~l~-----~G~p~~av~~~~~i~~~~~~~-----~~~~------------~~T~~~~p~~~aaa~a~l~~  199 (224)
                      .|+++.  -|.++     ||--+|.+.+++++.+.+...     +..+            .-.++++.+.+.++...+..
T Consensus       262 aD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~  341 (481)
T PRK04366        262 FDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRS  341 (481)
T ss_pred             CCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHH
Confidence            688764  38876     233355677888777766311     0001            11334555666666677777


Q ss_pred             HhhhhH---HHHHHHHHHHHHHhhhhc
Q psy6205         200 LETENL---REHALDVGNQLHTPKKEN  223 (224)
Q Consensus       200 ~~~~~l---~~~~~~~g~~l~~~l~~l  223 (224)
                      +-.+++   .++..++.++|.++|+++
T Consensus       342 ~G~~Gl~~~a~~~~~~a~~l~~~L~~~  368 (481)
T PRK04366        342 LGAEGLREVSEDAVLNANYLKARLKDI  368 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            655544   455677899999999764

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=84.56  E-value=7.6  Score=34.08  Aligned_cols=77  Identities=16%  Similarity=0.152  Sum_probs=45.2

Q ss_pred             Cchhccc----ccccCCcccccceecHHHHHhhh---cCCc----------------ccccCCCCcHHHHHHHHHHHHHH
Q psy6205         144 PDIVTVG----KPMGNGHPVAAVITTKEIAKSFQ---ETGV----------------EYFNTYGGNPVSCAVANAVMEVL  200 (224)
Q Consensus       144 pDi~~~~----K~l~~G~p~~av~~~~~i~~~~~---~~~~----------------~~~~T~~~~p~~~aaa~a~l~~~  200 (224)
                      -|+.++|    |.++.|.--+.++.++++.+.+.   ..+.                ..+.++-.+.+.+|.+++-|+.+
T Consensus       170 ~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l  249 (375)
T PRK11706        170 GHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAA  249 (375)
T ss_pred             cCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHH
Confidence            3777888    99964321223445677776432   1110                01244555678888888888887


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhh
Q psy6205         201 ETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       201 ~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ++  ..++-+++.+++.+.|..
T Consensus       250 ~~--~~~~R~~~~~~~~~~L~~  269 (375)
T PRK11706        250 DR--INQRRLALWQRYYDALAP  269 (375)
T ss_pred             HH--HHHHHHHHHHHHHHHhcC
Confidence            44  455566666666666654

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=84.19  E-value=9.4  Score=33.33  Aligned_cols=144  Identities=18%  Similarity=0.107  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-HHhCCc--cccccch-hhhhcCCC-----CCCc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-VQVGFG--RVGTHWW-AFQLQGDD-----IIPD  145 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-v~tG~G--rtG~~~~-~~~~~g~~-----v~pD  145 (224)
                      +++|++.+..-+-+......+++|--..++|. ++|.++++.+.++ -.-|+-  --|.-+| +.-.+|+.     ---|
T Consensus       114 ~e~v~~~i~~~d~~~~~~~~~~~e~~~te~Gt-Vy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D  192 (342)
T COG2008         114 PEDVEAAIRPDDIHHAPTPLAVLENTATEGGT-VYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVD  192 (342)
T ss_pred             HHHHHHhhcCCCcccCCCceEEEeeccCCCce-ecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCC
Confidence            46666655431113345567777776667775 6677888888888 111110  0011011 11111100     1135


Q ss_pred             hh--cccccccCCcccccc-eecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         146 IV--TVGKPMGNGHPVAAV-ITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       146 i~--~~~K~l~~G~p~~av-~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      .+  +++|++  |.|.+++ +++.++...+...-...+.-+.=.-+-.|+++..|+-----..-.+.+++.++|.++|+
T Consensus       193 ~v~~~~tK~g--~~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~~~~~Han~mA~~La~~~~  269 (342)
T COG2008         193 SVSFCLTKGG--GAPVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLAADHANAMAARLAEGLE  269 (342)
T ss_pred             EEEEecccCC--cceeeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhh
Confidence            54  445544  4555555 55777766654321122222221123334444433321111234445566888888776

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=84.02  E-value=0.89  Score=40.92  Aligned_cols=20  Identities=35%  Similarity=0.793  Sum_probs=17.9

Q ss_pred             CCC-cceeeccCCceeEEEEe
Q psy6205           3 RYP-LIGDVRGIGLFVGVELV   22 (224)
Q Consensus         3 ~~p-~v~~vRg~Gl~~gielv   22 (224)
                      +|| .++++||.|+|+++|+.
T Consensus       361 ~~~~~i~~vrg~G~~~~i~~~  381 (431)
T TIGR03251       361 EFPHLVSNPRGRGLMCAFDLP  381 (431)
T ss_pred             hCccceecccccceeEEEEeC
Confidence            478 88999999999999994

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PLN03032 serine decarboxylase; Provisional

Probab=83.92  E-value=18  Score=31.97  Aligned_cols=139  Identities=15%  Similarity=0.115  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-------------HHhCCccccccchhhh----h
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-------------VQVGFGRVGTHWWAFQ----L  137 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------------v~tG~GrtG~~~~~~~----~  137 (224)
                      +++|++.++.   ...+..+|++--...+-|.+-|-++.-+.+++.             .+.|+ .     ..+.    .
T Consensus       148 ~~~L~~~i~~---~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~-~-----~p~~~~~~~  218 (374)
T PLN03032        148 YDDLERALAK---NRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGL-M-----MPFVSRAPE  218 (374)
T ss_pred             HHHHHHHHHH---cCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhh-h-----hhccCCCcc
Confidence            5667776653   233556666655556688888888777777763             11111 0     0010    0


Q ss_pred             cCCCCCCchhccc-ccccC-CcccccceecHHHHHhhhcCCcccc----cCCCCcH--HHHHHHHHHHHHHhhhh---HH
Q psy6205         138 QGDDIIPDIVTVG-KPMGN-GHPVAAVITTKEIAKSFQETGVEYF----NTYGGNP--VSCAVANAVMEVLETEN---LR  206 (224)
Q Consensus       138 ~g~~v~pDi~~~~-K~l~~-G~p~~av~~~~~i~~~~~~~~~~~~----~T~~~~p--~~~aaa~a~l~~~~~~~---l~  206 (224)
                      +......|.++++ --+++ -.+.|+++.+++..+.+.... .+.    .|..|.-  ...+..-++|..+-.++   ..
T Consensus       219 ~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~-~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~  297 (374)
T PLN03032        219 VTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNV-EYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDV  297 (374)
T ss_pred             cCCCcCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCC-cccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHH
Confidence            1100235655543 22444 478899999988877664321 111    3555553  45566677888885544   56


Q ss_pred             HHHHHHHHHHHHhhhhc
Q psy6205         207 EHALDVGNQLHTPKKEN  223 (224)
Q Consensus       207 ~~~~~~g~~l~~~l~~l  223 (224)
                      +++-++.++|.++|++.
T Consensus       298 ~~~~~~a~~l~~~l~~~  314 (374)
T PLN03032        298 QHCMRNAHYLKDRLTEA  314 (374)
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            67778899999998875

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=83.75  E-value=2.6  Score=37.18  Aligned_cols=48  Identities=17%  Similarity=0.125  Sum_probs=35.3

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHH
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVM  197 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l  197 (224)
                      +|||..+ .|+-+|.+++++++++.+...  ....+++.++++.+++.+.+
T Consensus       242 S~SK~~~~~GlRiG~~~~~~~l~~~~~~~--~~~~~~~~~~~~q~a~~~~~  290 (396)
T PRK09147        242 SLSKRSNVPGLRSGFVAGDAALLKKFLLY--RTYHGCAMPPAVQAASIAAW  290 (396)
T ss_pred             ccccccCCccceeeeecCCHHHHHHHHHH--hhhcccCCCHHHHHHHHHHh
Confidence            6999875 579999999999999887642  12245566777777776666

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=83.62  E-value=3.2  Score=36.07  Aligned_cols=72  Identities=13%  Similarity=0.085  Sum_probs=45.6

Q ss_pred             ccccccc-CCccccccee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|||.+| .|+-+|.+++ ++++.+.+...    ...+.-+.++..++.+.|+--+- +...+.+++.-+++.+.|+++
T Consensus       210 S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  284 (354)
T PRK06358        210 AFTKFFAIPGLRLGYGLTSNKNLAEKLLQM----REPWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEF  284 (354)
T ss_pred             echhhccCcchhheeeecCCHHHHHHHHHh----CCCCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6899999 8999999988 47777777542    12455666777777776632100 223344555556666666543

>PRK05367 glycine dehydrogenase; Provisional

Probab=83.62  E-value=6.6  Score=39.17  Aligned_cols=141  Identities=17%  Similarity=0.171  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcc-cCCHHHHHHHHHH---H-HhCCccccccchhhhhcCCCCCCchhcc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQI-IPPANYLREVYKH---V-QVGFGRVGTHWWAFQLQGDDIIPDIVTV  149 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~-~~~~~~l~~~~~~---v-~tG~GrtG~~~~~~~~~g~~v~pDi~~~  149 (224)
                      +++|++.++   .+.+++++|++-- ....|.+ .+-+++.+.+++.   + .-|- -.+. ......-+ ..-.|++++
T Consensus       627 ~~~L~~~i~---~~~~~la~V~it~-pst~G~~e~~I~eI~~i~h~~G~~v~VDgA-~~~a-l~~l~~pg-~~GADi~~~  699 (954)
T PRK05367        627 LDDLRAKAE---EHADNLAAIMITY-PSTHGVFEETIREICEIVHEHGGQVYLDGA-NMNA-QVGLARPG-DIGADVSHL  699 (954)
T ss_pred             HHHHHHHHh---ccCCCeEEEEEEc-CCCCeeecCCHHHHHHHHHHcCCEEEEECc-Chhh-ccCCCChh-hcCCCEEEe
Confidence            456665554   2345677776643 2223443 5566666666665   1 0011 0000 00111111 123688877


Q ss_pred             c--cccc----CC-cccccceecHHHHHhhhcCCc---cc---ccCCCCcHH----HHHHHHHHHHHHhhhhHHHHHH--
Q psy6205         150 G--KPMG----NG-HPVAAVITTKEIAKSFQETGV---EY---FNTYGGNPV----SCAVANAVMEVLETENLREHAL--  210 (224)
Q Consensus       150 ~--K~l~----~G-~p~~av~~~~~i~~~~~~~~~---~~---~~T~~~~p~----~~aaa~a~l~~~~~~~l~~~~~--  210 (224)
                      +  |.++    +| --+|.+.+++++...+.....   ..   .++....+.    .+-.+..-|..+=.+++.+.++  
T Consensus       700 s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~  779 (954)
T PRK05367        700 NLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVA  779 (954)
T ss_pred             cCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence            6  8775    33 345667777766655433210   00   011111122    2222334444444566766666  


Q ss_pred             -HHHHHHHHhhhh
Q psy6205         211 -DVGNQLHTPKKE  222 (224)
Q Consensus       211 -~~g~~l~~~l~~  222 (224)
                       .+.+|+.++|++
T Consensus       780 ~~~A~Yl~~~L~~  792 (954)
T PRK05367        780 ILNANYIAKRLKD  792 (954)
T ss_pred             HHHHHHHHHHHHh
Confidence             899999999865

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=83.56  E-value=1.8  Score=38.31  Aligned_cols=21  Identities=38%  Similarity=0.860  Sum_probs=18.4

Q ss_pred             CCCcceeeccCCceeEEEEee
Q psy6205           3 RYPLIGDVRGIGLFVGVELVT   23 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~   23 (224)
                      +|+.+.++||.|+++++|++.
T Consensus       321 ~~~~~~~vrg~G~~~~i~~~~  341 (397)
T TIGR03246       321 RYNVFSEIRGKGLLIGAVLTE  341 (397)
T ss_pred             cCCCeEeeecCceEEEEEEcC
Confidence            367789999999999999964

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=83.51  E-value=5.2  Score=35.16  Aligned_cols=119  Identities=13%  Similarity=-0.016  Sum_probs=65.7

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchhc--ccccccC-C-ccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGN-G-HPVAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~-G-~p~~a  161 (224)
                      +..+|++|-.-.-.|.+..-+...+.+++.     |-.-|+ ++.   .+...+  .-.|+++  +.|-++| | .--|+
T Consensus       136 ~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~-~~~---~~~pl~--~gaDivv~S~tK~l~g~~d~~gG~  209 (364)
T PRK07269        136 DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFY-SPI---YQRPIE--LGADIVLHSATKYLSGHNDVLAGV  209 (364)
T ss_pred             CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCc-ccc---cCCchh--hCCcEEEecCceeccCCCcccceE
Confidence            456788887655566666656666666665     111121 111   112222  4478876  5688875 4 33445


Q ss_pred             cee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q psy6205         162 VIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLH  217 (224)
Q Consensus       162 v~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~  217 (224)
                      +++ ++++++.+...  ........+|..++.++..|+-+..  +...++++.+.+.|.
T Consensus       210 v~~~~~~l~~~~~~~--~~~~G~~~s~~~a~l~~~~L~tL~~r~~~~~~na~~~a~~L~  266 (364)
T PRK07269        210 VVTNDLELYEKLFYN--LNTTGAVLSPFDSYLLMRGLKTLSLRMERSTANAQEVVAFLK  266 (364)
T ss_pred             EEeCcHHHHHHHHHH--HHHhCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            566 46677666421  1112356789999999888887742  233344444444443

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=83.19  E-value=3.4  Score=35.85  Aligned_cols=72  Identities=6%  Similarity=0.058  Sum_probs=44.9

Q ss_pred             ccccccc-CCccccccee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL-ETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~-~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++|.++ .|+-+|.+++ ++++.+.+...    ...++-++++.+++.+.|+-- ......+.+++.-+++.+.|+++
T Consensus       209 S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~----~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~  283 (356)
T PRK08056        209 SLTKFYAIPGLRLGYLVNSDDAAVARMRRQ----QMPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCAL  283 (356)
T ss_pred             echhhccCcchhheeeecCCHHHHHHHHHh----CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6899999 7899999998 46777776532    234555666666666666310 01233444556666666666553

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=82.74  E-value=16  Score=36.39  Aligned_cols=140  Identities=14%  Similarity=0.121  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEc-cccCCCCcccC-CHHHHHHHHHH----HHhCCccccccchhhhhcCCCCCCchhc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAE-SLQSCGGQIIP-PANYLREVYKH----VQVGFGRVGTHWWAFQLQGDDIIPDIVT  148 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~E-pv~~~~G~~~~-~~~~l~~~~~~----v~tG~GrtG~~~~~~~~~g~~v~pDi~~  148 (224)
                      +++|++.++.   +++++++|++. |-.  .|.+.+ -++..+.+.+.    ..-|---.+  ......-+ +.-.|+++
T Consensus       615 le~L~~~i~~---~~~~taaV~iT~pst--~G~~e~~I~eI~~iah~~G~~v~VDgAq~~a--l~~l~~Pg-~~GaDi~~  686 (939)
T TIGR00461       615 LVDLKNKAEQ---HGDELAAVMVTYPST--HGVFEPTIQHACDIVHSFGGQVYLDGANMNA--QVGLTSPG-DLGADVCH  686 (939)
T ss_pred             HHHHHHHHhh---cCCceEEEEEEeCCc--CceecccHHHHHHHHHHcCCEEEEEecChhh--CCCCCCcc-ccCCCEEE
Confidence            5677776652   45688888775 432  466655 44555555544    000000000  00000001 13379988


Q ss_pred             c--ccccc-----CCcccccceecHHHHHhhhcCC---------cc-c---c-cCCCCcHHHHHHHHHHHHHHhhhhH--
Q psy6205         149 V--GKPMG-----NGHPVAAVITTKEIAKSFQETG---------VE-Y---F-NTYGGNPVSCAVANAVMEVLETENL--  205 (224)
Q Consensus       149 ~--~K~l~-----~G~p~~av~~~~~i~~~~~~~~---------~~-~---~-~T~~~~p~~~aaa~a~l~~~~~~~l--  205 (224)
                      +  .|.++     ||--+|.+.+++++...+....         +. +   . +.+.++.+.+-.+...|..+=.+++  
T Consensus       687 ~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~  766 (939)
T TIGR00461       687 LNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPK  766 (939)
T ss_pred             ecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHH
Confidence            7  59887     5555788888877655443210         00 1   1 2367777777777777888865554  


Q ss_pred             -HHHHHHHHHHHHHhhhh
Q psy6205         206 -REHALDVGNQLHTPKKE  222 (224)
Q Consensus       206 -~~~~~~~g~~l~~~l~~  222 (224)
                       .+..-.+..|+.++|++
T Consensus       767 ~a~~ailnAnYl~~rL~~  784 (939)
T TIGR00461       767 ASVVAILNANYMATRLKD  784 (939)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence             44455678888888865

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=82.13  E-value=20  Score=32.37  Aligned_cols=26  Identities=15%  Similarity=0.448  Sum_probs=21.3

Q ss_pred             ccccccc-CCccccccee-cHHHHHhhh
Q psy6205         148 TVGKPMG-NGHPVAAVIT-TKEIAKSFQ  173 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~-~~~i~~~~~  173 (224)
                      .|||.+| .|+=+|++++ ++++.+.+.
T Consensus       276 s~SK~fg~~GlRvG~ivs~n~~l~~~~~  303 (447)
T PLN02607        276 SLSKDLGLPGFRVGTIYSYNDKVVTTAR  303 (447)
T ss_pred             cchhcCCCCcceEEEEEEcCHHHHHHHH
Confidence            6899998 7999999998 677776654

>PLN02368 alanine transaminase

Probab=82.10  E-value=4.1  Score=36.38  Aligned_cols=73  Identities=8%  Similarity=-0.034  Sum_probs=50.0

Q ss_pred             ccccccc--CCcccccce---ecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH-----------Hhh-hhHHHHHH
Q psy6205         148 TVGKPMG--NGHPVAAVI---TTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV-----------LET-ENLREHAL  210 (224)
Q Consensus       148 ~~~K~l~--~G~p~~av~---~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~-----------~~~-~~l~~~~~  210 (224)
                      +|||.+.  .|+-+|.++   +.+++++.+...   ...+++.|.++-.++.+.|+-           .++ .++.+..+
T Consensus       288 SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~---~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  364 (407)
T PLN02368        288 TVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKV---ASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLR  364 (407)
T ss_pred             cCCcccccCCccceEEEEEeCCCHHHHHHHHHH---hcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHH
Confidence            5799984  689899988   488888887653   123556677888888887742           222 23566667


Q ss_pred             HHHHHHHHhhhhc
Q psy6205         211 DVGNQLHTPKKEN  223 (224)
Q Consensus       211 ~~g~~l~~~l~~l  223 (224)
                      +.-+.+.+.|+++
T Consensus       365 ~rr~~~~~~L~~~  377 (407)
T PLN02368        365 RRARMMTDGFNSC  377 (407)
T ss_pred             HHHHHHHHHHhCC
Confidence            7777777777754

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=81.38  E-value=3.1  Score=35.98  Aligned_cols=71  Identities=15%  Similarity=0.150  Sum_probs=46.5

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++| .+ .|+.+|.+++++++++.+....    ..+..+.++.+++...++..+ -++..+++++.-+++.+.|+++
T Consensus       215 S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~----~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  287 (356)
T PRK04870        215 TVSK-LGLAGLRLGYLAGHPAWIAELDKVR----PPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAAL  287 (356)
T ss_pred             cchh-hhhHHHhhhhhhCCHHHHHHHHHcc----CCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            6899 65 4789999999999998886431    234556676666666664321 1234555666666677766654

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=81.32  E-value=33  Score=29.32  Aligned_cols=111  Identities=15%  Similarity=0.217  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCch
Q psy6205          72 VKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +.+.+-+|++.+   +.++.++..++.=+-|+-|.++.-+.+-+-+++.     .-|.+ -.|+ +=.. .-  .+.+|.
T Consensus       140 e~y~~viee~~~---~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AY-t~Gr-mpvs-~k--e~g~DF  211 (382)
T COG1103         140 EGYAEVIEEVKD---EGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAY-TVGR-MPVS-GK--EIGADF  211 (382)
T ss_pred             HHHHHHHHHHHh---ccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecce-eecc-cccc-cc--ccCCCE
Confidence            345666666665   3557788777777888889999999999999998     33333 3444 2112 11  277998


Q ss_pred             hccc--ccccCCcccccceecHHHHHhhhcCC-c--------ccccCCCCcHHHH
Q psy6205         147 VTVG--KPMGNGHPVAAVITTKEIAKSFQETG-V--------EYFNTYGGNPVSC  190 (224)
Q Consensus       147 ~~~~--K~l~~G~p~~av~~~~~i~~~~~~~~-~--------~~~~T~~~~p~~~  190 (224)
                      ++=|  |+++..-|+|.+.+++|..+..-..+ +        .++-|-.|-|+..
T Consensus       212 iVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivT  266 (382)
T COG1103         212 IVGSGHKSMAASAPIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVT  266 (382)
T ss_pred             EEecCccchhccCCeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHH
Confidence            8754  88886669999999999988754321 1        2345666777643

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=81.27  E-value=7.9  Score=33.91  Aligned_cols=78  Identities=12%  Similarity=0.175  Sum_probs=50.5

Q ss_pred             chhcc--cccccCCcc-cccceecHHHHHhhhcC-Cc--------ccccCC-CCcHHHHHHHHHHHHHHhhh----hHHH
Q psy6205         145 DIVTV--GKPMGNGHP-VAAVITTKEIAKSFQET-GV--------EYFNTY-GGNPVSCAVANAVMEVLETE----NLRE  207 (224)
Q Consensus       145 Di~~~--~K~l~~G~p-~~av~~~~~i~~~~~~~-~~--------~~~~T~-~~~p~~~aaa~a~l~~~~~~----~l~~  207 (224)
                      |++++  =|.+|  -| +|.+.++++..+.+.+. ..        ....|+ +-|-....+..++|+++.++    ++.+
T Consensus       188 d~~~~ssqK~lg--P~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~  265 (360)
T PRK05355        188 GLIYAGAQKNIG--PAGLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEK  265 (360)
T ss_pred             cEEEEecccccc--CCceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            34443  37773  33 67789999988776441 10        001222 23444666677889998654    5777


Q ss_pred             HHHHHHHHHHHhhhhcC
Q psy6205         208 HALDVGNQLHTPKKENN  224 (224)
Q Consensus       208 ~~~~~g~~l~~~l~~l~  224 (224)
                      +.+++.+++++.|++++
T Consensus       266 r~~~l~~~l~~~l~~~~  282 (360)
T PRK05355        266 RNQEKAALLYDAIDSSD  282 (360)
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            78899999999998764

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=81.26  E-value=24  Score=30.88  Aligned_cols=39  Identities=10%  Similarity=0.186  Sum_probs=29.4

Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         183 YGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       183 ~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +..+.+..+.+++.|+.+  +...++-+++.+++.+.|+.+
T Consensus       240 ~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L~~~  278 (380)
T TIGR03588       240 YRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLLKDL  278 (380)
T ss_pred             cCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC
Confidence            444677778888877776  447778888889998888764

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=81.12  E-value=24  Score=31.43  Aligned_cols=125  Identities=15%  Similarity=0.155  Sum_probs=75.0

Q ss_pred             CceEEEE-ccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCC--c----hhcccc
Q psy6205          91 RPCAFFA-ESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIP--D----IVTVGK  151 (224)
Q Consensus        91 ~iaavi~-Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~p--D----i~~~~K  151 (224)
                      ++-+|++ -|--- .| ...+++.++.+.++            +..+|--.|. .+.+ -..  +.+  |    +-.|||
T Consensus       163 ktk~i~ln~P~NP-TG-av~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~-~~~s-~~~--~~~~~~~~i~i~s~SK  236 (393)
T COG0436         163 KTKAIILNSPNNP-TG-AVYSKEELKAIVELAREHDIIIISDEIYEELVYDGA-EHPS-ILE--LAGARDRTITINSFSK  236 (393)
T ss_pred             cceEEEEeCCCCC-cC-cCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCC-CcCC-Hhh--cCCCcceEEEEecccc
Confidence            4445554 56322 23 35678888888888            6666544442 0111 111  233  2    225899


Q ss_pred             ccc-CCcccccceec-HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHhhhhc
Q psy6205         152 PMG-NGHPVAAVITT-KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET----ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       152 ~l~-~G~p~~av~~~-~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~----~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ..+ -|+=+|.+++. +++.+.+..-  ....+++.+.++-.+|.++|+--++    +...+..++.-+.+.+.|+++
T Consensus       237 ~~~mtGwRvG~~v~~~~~l~~~~~~~--~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~  312 (393)
T COG0436         237 TYGMTGWRIGWVVGPPEELIAALRKL--KSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEI  312 (393)
T ss_pred             cccccccceeEeecChHHHHHHHHHH--HHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999 68999999999 8888877521  2235667777788888888874321    122245666666777777654

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=81.05  E-value=3.2  Score=36.52  Aligned_cols=49  Identities=16%  Similarity=0.100  Sum_probs=35.3

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHH
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVME  198 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~  198 (224)
                      ++||..+ .|+=+|++++++++.+.+...  ....+++.+++...++.+.++
T Consensus       241 S~SK~~~~~GlRvG~~i~~~~l~~~~~~~--~~~~~~~~~~~~q~~~~~~l~  290 (393)
T TIGR03538       241 SLSKRSNLPGLRSGFVAGDAEILKAFLRY--RTYHGCAMPIPTQLASIAAWN  290 (393)
T ss_pred             cchhhcCCcccceEEEecCHHHHHHHHHH--HHhhccCcCHHHHHHHHHHhc
Confidence            6899865 578999999999998877542  112345567777777777663

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=80.91  E-value=4.9  Score=35.17  Aligned_cols=112  Identities=20%  Similarity=0.155  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH----------HHhCCccccccchhhhhcCCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH----------VQVGFGRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----------v~tG~GrtG~~~~~~~~~g~~v~p  144 (224)
                      +++|++.+...  ..+++.+|++-+-+.-.|...+..+ ++.+.++          +..-|.  +..  ......  -.+
T Consensus       154 ~~~l~~~~~~~--~~~~~k~i~l~~P~NPTG~~~s~~~-l~~l~~~~~~~~iI~De~Y~~~~--~~~--~~~~~~--~~~  224 (374)
T PRK02610        154 LAAAQSAIEQT--QNPPVRVVFVVHPNSPTGNPLTAAE-LEWLRSLPEDILVVIDEAYFEFS--QTT--LVGELA--QHP  224 (374)
T ss_pred             HHHHHHHHHhh--cCCCceEEEEeCCCCCCCCCCCHHH-HHHHHhccCCcEEEEeccccccC--ccc--hHHHHh--cCC
Confidence            35555555421  1245667766554554777665544 4555544          222221  100  001111  113


Q ss_pred             chh---ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH
Q psy6205         145 DIV---TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV  199 (224)
Q Consensus       145 Di~---~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~  199 (224)
                      .++   +|||.+| .|+-+|.+++++++.+.+....    ..++.+.++-.++.++|+.
T Consensus       225 ~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~----~~~~~~~~~q~a~~~~l~~  279 (374)
T PRK02610        225 NWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVR----LPYNLPSFSQLAAQLALEH  279 (374)
T ss_pred             CEEEEEecchhccCcccceeeeecCHHHHHHHHHhc----CCCCCCHHHHHHHHHHhcC
Confidence            333   6899996 6899999999999998886431    2344566776666666653

>PRK08114 cystathionine beta-lyase; Provisional

Probab=80.11  E-value=7  Score=34.90  Aligned_cols=120  Identities=13%  Similarity=0.083  Sum_probs=74.2

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCchhc--ccccccC-C-ccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGN-G-HPV  159 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~-G-~p~  159 (224)
                      +...|.+|.+....|.+.+-+...+.+++.       |-.-| -++. .  ++-..  .-.|+++  .-|-|+| + .-.
T Consensus       147 ~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~-a~p~-~--~~pl~--~GaDivv~S~tKyl~Ghsdv~~  220 (395)
T PRK08114        147 NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTW-AAGV-L--FKALD--FGIDISIQAGTKYLVGHSDAMI  220 (395)
T ss_pred             CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCC-cccc-c--cCHHH--cCCcEEEEcCcccccCCCccee
Confidence            568999999988889999888888888874       11112 1232 2  22222  3388886  6799987 4 566


Q ss_pred             ccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHH
Q psy6205         160 AAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHT  218 (224)
Q Consensus       160 ~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~  218 (224)
                      |+++.+++..+.+.......  --..+|..|-..+..|+-+.  =+.-.+++.++.++|++
T Consensus       221 G~v~~~~~~~~~l~~~~~~~--G~~~~p~~a~l~~rgl~TL~lR~~~~~~na~~va~~L~~  279 (395)
T PRK08114        221 GTAVANARCWEQLRENSYLM--GQMVDADTAYMTSRGLRTLGVRLRQHEESSLKVAEWLAE  279 (395)
T ss_pred             EEEEcCHHHHHHHHHHHHhc--cCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHc
Confidence            76777877766554221111  12456777776666666552  24556667777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
3hmu_A	472	Crystal Structure Of A Class Iii Aminotransferase F		5e-15
3ruy_A	392	Crystal Structure Of The Ornithine-Oxo Acid Transam		7e-15
1d7r_A	433	Crystal Structure Of The Complex Of 2,2-Dialkylglyc		1e-14
1m0n_A	433	Structure Of Dialkylglycine Decarboxylase Complexed		1e-14
1z3z_A	431	The Crystal Structure Of A Dgd Mutant: Q52a Length		1e-14
1dgd_A	432	An Alkali Metal Ion Size-Dependent Switch In The Ac		2e-14
2byl_A	439	Structure Of Ornithine Aminotransferase Triple Muta		2e-14
3n5m_A	452	Crystals Structure Of A Bacillus Anthracis Aminotra		6e-14
2byj_A	439	Ornithine Aminotransferase Mutant Y85i Length = 439		3e-13
1oat_A	439	Ornithine Aminotransferase Length = 439		3e-13
2can_A	402	Human Ornithine Aminotransferase Complexed With L-C		3e-13
2pb0_A	420	Structure Of Biosynthetic N-Acetylornithine Aminotr		5e-13
2eo5_A	419	Crystal Structure Of 4-Aminobutyrate Aminotransfera		5e-13
1z7d_A	433	Ornithine Aminotransferase Py00104 From Plasmodium		7e-13
3nx3_A	395	Crystal Structure Of Acetylornithine Aminotransfera		9e-13
3du4_A	448	Crystal Structure Of 7-Keto-8-Aminopelargonic Acid		3e-12
3dod_A	448	Crystal Structure Of Plp Bound 7,8-diaminopelargoni		6e-12
4adb_A	406	Structural And Functional Study Of Succinyl-ornithi		4e-11
2e54_A	385	Crystal Structure Of Acetylornithine Aminotransfera		9e-11
3lg0_A	422	Structure Of Plasmodium Falciparum Ornithine Delta-		2e-10
1szk_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		2e-10
3oks_A	451	Crystal Structure Of 4-Aminobutyrate Transaminase F		2e-10
1szs_A	426	The Structure Of Gamma-aminobutyrate Aminotransfera		2e-10
1sf2_A	426	Structure Of E. Coli Gamma-Aminobutyrate Aminotrans		2e-10
2eh6_A	375	Crystal Structure Of Acetylornithine Aminotransfera		2e-10
1vef_A	395	Acetylornithine Aminotransferase From Thermus Therm		2e-10
3i5t_A	476	Crystal Structure Of Aminotransferase Prk07036 From		3e-10
2ord_A	397	Crystal Structure Of Acetylornithine Aminotransfera		3e-10
3r4t_A	467	Crystal Structure Of 4-Aminobutyrate Aminotransfera		7e-10
1szu_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		7e-10
3nui_A	478	Crystal Structure Of Omega-Transferase From Vibrio		3e-09
4e3q_A	473	Pmp-Bound Form Of Aminotransferase Crystal Structur		5e-09
4a6r_A	459	Crystal Structure Of The Omega Transaminase From Ch		8e-09
4e3r_A	473	Plp-Bound Aminotransferase Mutant Crystal Structure		1e-08
3a8u_X	449	Crystal Structure Of Omega-Amino Acid:pyruvate Amin		4e-08
4grx_A	465	Structure Of An Omega-Aminotransferase From Paracoc		5e-08
2e7u_A	424	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		6e-08
3q8n_A	453	Crystal Structure Of 4-Aminobutyrate Transaminase F		9e-08
4ffc_A	453	Crystal Structure Of A 4-Aminobutyrate Aminotransfe		1e-07
3i4j_A	430	Crystal Structure Of Aminotransferase, Class Iii Fr		9e-07
2zuk_A	439	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		6e-06
3dxw_A	452	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		6e-06
2jjh_A	449	E243 Mutant Of M. Tuberculosis Rv3290c Length = 449		7e-06
4atp_A	456	Structure Of Gaba-Transaminase A1r958 From Arthroba		7e-06
3l44_A	434	Crystal Structure Of Bacillus Anthracis Heml-1, Glu		7e-06
2jjf_A	449	N328a Mutant Of M. Tuberculosis Rv3290c Length = 44		9e-06
1ohv_A	472	4-aminobutyrate-aminotransferase From Pig Length =		1e-05
2cin_A	449	Lysine Aminotransferase From M. Tuberculosis In The		1e-05
3bv0_A	437	Crystal Structure Of Plp Bound 7,8-Diaminopelargoni		1e-05
3tft_A	457	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		1e-05
3lv2_A	462	Crystal Structure Of Mycobacterium Tuberculosis 7,8		2e-05
1dty_A	429	Crystal Structure Of Adenosylmethionine-8-Amino-7-O		2e-05
3fcr_A	459	Crystal Structure Of Putative Aminotransferase (Yp_		2e-05
2jje_A	449	Crystal Structure Of T330s Mutant Of Rv3290c From M		3e-05
1mgv_A	429	Crystal Structure Of The R391a Mutant Of 7,8-Diamin		3e-05
1qj3_A	429	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		3e-05
1s09_A	429	Crystal Structure Of The Y144f Mutant Of 7,8- Diami		1e-04
1s0a_A	429	Crystal Structure Of The Y17f Mutant Of 7,8- Diamin		1e-04
1s08_A	429	Crystal Structure Of The D147n Mutant Of 7,8- Diami		1e-04
1s07_A	429	Crystal Structure Of The R253a Mutant Of 7,8-Diamin		2e-04
2epj_A	434	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		3e-04
1s06_A	429	Crystal Structure Of The R253k Mutant Of 7,8- Diami		4e-04
4e77_A	429	2.0a Crystal Structure Of A Glutamate-1-Semialdehyd		4e-04
3gju_A	459	Crystal Structure Of A Putative Aminotransferase (M		8e-04

>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 25/179 (13%)
Query: 53  PDVYRGKYP------ADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQ 106
           PDV+    P       D  P+E  G+  A+++++ I  +G N  R  AF AE +Q  GG 
Sbjct: 182 PDVHHINQPNWWAEGGDMDPEE-FGLARARELEEAILELGEN--RVAAFIAEPVQGAGGV 238
Query: 107 IIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMG 154
           I+ P +Y  E+ +             V  GFGR G +W+  Q  G  I P I+T+ K + 
Sbjct: 239 IVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG-NWFGTQTMG--IRPHIMTIAKGLS 295
Query: 155 NGH-PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDV 212
           +G+ P+   I   E+A    +    +  TY G+PV+ AVA   + +LE EN+ +H  +V
Sbjct: 296 SGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNV 354

>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 18/142 (12%)
Query: 94  AFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDD 141
           AF  E +Q   G  IPPA +L+E            V   +Q G GR G     F    D+
Sbjct: 185 AFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK---VFACDWDN 241
Query: 142 IIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
           + PD+  +G  +G G  P++     ++I   F+     + +T+GGNP++CAV+ A +EVL
Sbjct: 242 VTPDMYILGXALGGGVFPISCAAANRDILGVFEPGS--HGSTFGGNPLACAVSIAALEVL 299
Query: 201 ETENLREHALDVGNQLHTPKKE 222
           E E L E +L +G +L    KE
Sbjct: 300 EEEKLTERSLQLGEKLVGQLKE 321

>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 42  PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQ 101
           P    S   P P  YR ++  +   D    + YA D+ D      ++     AF AE + 
Sbjct: 159 PAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDR-----QSSGNLAAFIAEPIL 213
Query: 102 SCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTV 149
           S GG I  P  Y+              +    Q G GR GT    F  Q D + PDI+T+
Sbjct: 214 SSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM---FACQRDGVTPDILTL 270
Query: 150 GKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
            K +G G P+AA++T+  I +   E G  ++ T+  +P+  AV   V++V++ + L   A
Sbjct: 271 SKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARA 330
Query: 210 LDVGNQLH 217
             +G++L 
Sbjct: 331 NVMGDRLR 338

>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 42  PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQ 101
           P    S   P P  YR ++  +   D    + YA D+ D      ++     AF AE + 
Sbjct: 159 PAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDR-----QSSGNLAAFIAEPIL 213
Query: 102 SCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTV 149
           S GG I  P  Y+              +    Q G GR GT    F  Q D + PDI+T+
Sbjct: 214 SSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM---FACQRDGVTPDILTL 270
Query: 150 GKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
            K +G G P+AA++T+  I +   E G  ++ T+  +P+  AV   V++V++ + L   A
Sbjct: 271 SKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARA 330
Query: 210 LDVGNQLH 217
             +G++L 
Sbjct: 331 NVMGDRLR 338

>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 42  PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQ 101
           P    S   P P  YR ++  +   D    + YA D+ D      ++     AF AE + 
Sbjct: 157 PAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDR-----QSSGNLAAFIAEPIL 211
Query: 102 SCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTV 149
           S GG I  P  Y+              +    Q G GR GT    F  Q D + PDI+T+
Sbjct: 212 SSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM---FACQRDGVTPDILTL 268
Query: 150 GKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
            K +G G P+AA++T+  I +   E G  ++ T+  +P+  AV   V++V++ + L   A
Sbjct: 269 SKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARA 328
Query: 210 LDVGNQLH 217
             +G++L 
Sbjct: 329 NVMGDRLR 336

>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 42  PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQ 101
           P    S   P P  YR ++  +   D    + YA D+ D      ++     AF AE + 
Sbjct: 158 PAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDR-----QSSGNLAAFIAEPIL 212
Query: 102 SCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTV 149
           S GG I  P  Y+              +    Q G GR GT    F  Q D + PDI+T+
Sbjct: 213 SSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM---FACQRDGVTPDILTL 269
Query: 150 GKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
            K +G G P+AA++T+  I +   E G  ++ T+  +P+  AV   V++V++ + L   A
Sbjct: 270 SKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARA 329
Query: 210 LDVGNQLH 217
             +G++L 
Sbjct: 330 NVMGDRLR 337

>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 18/134 (13%)
Query: 93  CAFFAESLQSCGGQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGD 140
            AF  E +Q   G ++P   YL   RE         +   +Q G  R G  W A   +  
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE-- 281
Query: 141 DIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV 199
           ++ PDIV +GK +  G +PV+AV+   +I  + +    E+F+TYGGNP+ C VA A +EV
Sbjct: 282 NVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG--EHFSTYGGNPLGCRVAIAALEV 339
Query: 200 LETENLREHALDVG 213
           LE ENL E+A  +G
Sbjct: 340 LEEENLAENADKLG 353

>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 20/146 (13%)
Query: 94  AFFAESLQSCGGQIIPPANYLREVYKHVQ------------VGFGRVGTHWWAFQLQGDD 141
           AF  E + + GG +  P +Y + V++  Q             GFGR G    AF     D
Sbjct: 218 AFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGK---AFGFXNYD 274
Query: 142 IIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETG-VEYF---NTYGGNPVSCAVANAV 196
           + PDI+T  K + + + P++A    +EI ++F+  G  E+F   NT+GGNP +CA+A   
Sbjct: 275 VKPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKN 334
Query: 197 MEVLETENLREHALDVGNQLHTPKKE 222
           +E++E ENL E +   G+ L    KE
Sbjct: 335 LEIIENENLIERSAQXGSLLLEQLKE 360

>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 18/134 (13%)
Query: 93  CAFFAESLQSCGGQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGD 140
            AF  E +Q   G ++P   YL   RE         +   +Q G  R G  W A   +  
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE-- 281
Query: 141 DIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV 199
           ++ PDIV +GK +  G +PV+AV+   +I  + +    E+ +TYGGNP+ C VA A +EV
Sbjct: 282 NVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG--EHGSTYGGNPLGCRVAIAALEV 339
Query: 200 LETENLREHALDVG 213
           LE ENL E+A  +G
Sbjct: 340 LEEENLAENADKLG 353

>pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 18/134 (13%)
Query: 93  CAFFAESLQSCGGQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGD 140
            AF  E +Q   G ++P   YL   RE         +   +Q G  R G  W A   +  
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE-- 281
Query: 141 DIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV 199
           ++ PDIV +GK +  G +PV+AV+   +I  + +    E+ +TYGGNP+ C VA A +EV
Sbjct: 282 NVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG--EHGSTYGGNPLGCRVAIAALEV 339
Query: 200 LETENLREHALDVG 213
           LE ENL E+A  +G
Sbjct: 340 LEEENLAENADKLG 353

>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 18/134 (13%)
Query: 93  CAFFAESLQSCGGQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGD 140
            AF  E +Q   G ++P   YL   RE         +   +Q G  R G  W A   +  
Sbjct: 188 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYE-- 244
Query: 141 DIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV 199
           ++ PDIV +GK +  G +PV+AV+   +I  + +    E+ +TYGGNP+ C VA A +EV
Sbjct: 245 NVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG--EHGSTYGGNPLGCRVAIAALEV 302
Query: 200 LETENLREHALDVG 213
           LE ENL E+A  +G
Sbjct: 303 LEEENLAENADKLG 316

>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 17/122 (13%)
Query: 93  CAFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGD 140
           CA   E +Q  GG       +L+             V+  VQ G GR G   +A+   G 
Sbjct: 203 CAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD-LFAYMHYG- 260
Query: 141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
            + PDI+T  K +G G PV+A++TT+EIA +F      + +TYGGNP++CAVA A  +++
Sbjct: 261 -VTPDILTSAKALGGGFPVSAMLTTQEIASAFHVG--SHGSTYGGNPLACAVAGAAFDII 317
Query: 201 ET 202
            T
Sbjct: 318 NT 319

>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 31  ATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPD-EDLGVKYAQDVQDLIEAMGRNG 89
           A+   Q  I  P +      P P+ YR  +  + Y +  +L  +  + ++D I       
Sbjct: 151 ASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPP 210
Query: 90  KRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQL 137
           +     F E +Q  GG +IPP N+  E+ K             VQ+G GR G     F +
Sbjct: 211 EEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK---LFAI 267
Query: 138 QGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAV 196
           +  + +PD++T+ K +G G  P+ A I  K++   F+     + NT+GGN ++CA+ + V
Sbjct: 268 ENFNTVPDVITLAKALGGGIMPIGATIFRKDL--DFKPG--MHSNTFGGNALACAIGSKV 323
Query: 197 MEVLETENLREHALDVG 213
           ++++  ++L  H  ++G
Sbjct: 324 IDIV--KDLLPHVNEIG 338

>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 80  DLIEAMGRNGKRP--CAFFAESLQSCGGQIIPPANYLREVYK------------HVQVGF 125
           D +EA+    K P  CAF  E +Q   G I+P  NYL+ VY              VQ G 
Sbjct: 199 DDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGL 258
Query: 126 GRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYFNTYG 184
           GR G           ++ PD++ +GK +  GH P++AV+   +I    +    E+ +TYG
Sbjct: 259 GRTGKLLCVHHY---NVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPG--EHGSTYG 313
Query: 185 GNPVSCAVANAVMEVLETENLREHALDVG 213
           GNP++ ++    + VL  E L E+A  +G
Sbjct: 314 GNPLAASICVEALNVLINEKLCENAEKLG 342

>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 25/154 (16%)
Query: 71  GVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK----------- 119
           GVK+A+   D+        ++ CA   ES+Q  GG  I PAN  ++ YK           
Sbjct: 160 GVKFAK-YNDISSVEKLVNEKTCAIILESVQGEGG--INPAN--KDFYKALRKLCDEKDI 214
Query: 120 -----HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQE 174
                 +Q G GR G     F  +   I+PDI T  K +G G  V A +  +++A +  E
Sbjct: 215 LLIADEIQCGXGRSGKF---FAYEHAQILPDIXTSAKALGCGLSVGAFVINQKVASNSLE 271
Query: 175 TGVEYFNTYGGNPVSCAVANAVMEVLETENLREH 208
            G ++ +TYGGNP+ CA  NAV E+ + E + E+
Sbjct: 272 AG-DHGSTYGGNPLVCAGVNAVFEIFKEEKILEN 304

>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 29/203 (14%)
Query: 34  EAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPC 93
           E  H +  P +  S +AP P VYR +   D  PDE       Q +++L + +  + +   
Sbjct: 160 ELFHHVYGPLMFESYKAPIPYVYRSE-SGD--PDE----CRDQXLRELAQLLEEHHEEIA 212
Query: 94  AFFAESL-QSCGGQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGD 140
           A   ES+ Q   G I+ P  YL   RE         +   V  GFGR G     F  + +
Sbjct: 213 ALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK---MFACEHE 269
Query: 141 DIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQ---ETGVEYFN--TYGGNPVSCAVAN 194
           ++ PD++  GK +  G+ P+A    T++I K+F    E    +F+  +Y GN + CAVA 
Sbjct: 270 NVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVAL 329
Query: 195 AVMEVLETENLREHALDVGNQLH 217
             + + E+EN+ E   +   +LH
Sbjct: 330 ENLALFESENIVEQVAEKSKKLH 352

>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 29/203 (14%)
Query: 34  EAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPC 93
           E  H +  P +  S +AP P VYR +   D  PDE       Q +++L + +  + +   
Sbjct: 160 ELFHHVYGPLMFESYKAPIPYVYRSE-SGD--PDE----CRDQCLRELAQLLEEHHEEIA 212
Query: 94  AFFAESL-QSCGGQIIPPANYL---RE---------VYKHVQVGFGRVGTHWWAFQLQGD 140
           A   ES+ Q   G I+ P  YL   RE         +   V  GFGR G     F  + +
Sbjct: 213 ALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK---MFACEHE 269
Query: 141 DIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQ---ETGVEYFN--TYGGNPVSCAVAN 194
           ++ PD++  GK +  G+ P+A    T++I K+F    E    +F+  +Y GN + CAVA 
Sbjct: 270 NVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVAL 329
Query: 195 AVMEVLETENLREHALDVGNQLH 217
             + + E+EN+ E   +   +LH
Sbjct: 330 ENLALFESENIVEQVAEKSKKLH 352

>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 19/123 (15%)
Query: 93  CAFFAESLQSCGGQIIPPANY----LRE---------VYKHVQVGFGRVGTHWWAFQLQG 139
           CA   E +Q  GG ++P +N     LRE         ++  VQ G GR G   +A+   G
Sbjct: 185 CAVIVEPIQGEGG-VVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG-ELYAYMHYG 242
Query: 140 DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV 199
             + PD++T  K +G G PV A++ T+E A+    T   +  TYGGNP++ AVA  V+E+
Sbjct: 243 --VTPDLLTTAKALGGGFPVGALLATEECARVM--TVGTHGTTYGGNPLASAVAGKVLEL 298
Query: 200 LET 202
           + T
Sbjct: 299 INT 301

>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 25/178 (14%)
Query: 61  PADKYPDEDL--GVKYAQ--DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLRE 116
           P  + P E L  G +Y +  +V+DL   M  +    CA F E +Q   G +     +L E
Sbjct: 140 PKYQKPFEPLVPGFEYFEFNNVEDLRRKMSED---VCAVFLEPIQGESGIVPATKEFLEE 196
Query: 117 ------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVIT 164
                       V+  VQ G GR G   +A+Q  G  ++PD++T  K +G G P+ AVI 
Sbjct: 197 ARKLCDEYDALLVFDEVQCGMGRTG-KLFAYQKYG--VVPDVLTTAKGLGGGVPIGAVIV 253
Query: 165 TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
            +    +  E G ++  T+GGNP++C     V++ L  E   E   + GN L    +E
Sbjct: 254 NER--ANVLEPG-DHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQE 308

>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 28/153 (18%)
Query: 80  DLIEAMGRNGKRP--CAFFAESLQSCGGQIIPPANYL------------REVYKHVQVGF 125
           D +EA+ +  + P  CAF  E +Q   G I+P  +Y               V   VQ G 
Sbjct: 180 DDLEALEKELQDPNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGL 239
Query: 126 GRVG----THWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYF 180
           GR G    TH +  +       PD++ +GK +  GH P++A++   ++    +    E+ 
Sbjct: 240 GRTGKLLCTHHYGVK-------PDVILLGKALSGGHYPISAILANDDVMLVLKPG--EHG 290
Query: 181 NTYGGNPVSCAVANAVMEVLETENLREHALDVG 213
           +TYGGNP++ A+    ++VL  E L E+A  +G
Sbjct: 291 STYGGNPLAAAICVEALKVLINEKLCENADKLG 323

>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
           +   VQ G GR GT    F ++   + PD+ T  K +  G P+A V    E+  +    G
Sbjct: 237 IADEVQSGAGRTGT---LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           +    TY GNP++C  A  V++V E ENL + A D+G +L
Sbjct: 294 LG--GTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331

>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 28/178 (15%)
Query: 52  CPDVYRG--KYPADKYPDEDLGVKYAQD----VQDLIEAMGRN--GKRPCAFFAESLQSC 103
            P++YR    YP   + D + G + A D     +  I  + +        A   E +Q  
Sbjct: 183 APEIYRAPLSYP---FRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGE 239
Query: 104 GGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGK 151
           GG I+P   +L              +   VQ GF R G     F  + + I PD++    
Sbjct: 240 GGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAM---FACEHEGIDPDLIVTAX 296
Query: 152 PMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
            +  G P++AV    EI  S   +G+    TYGGNP++CA A A +E +E+E L   A
Sbjct: 297 GIAGGLPLSAVTGRAEIMDSPHVSGLG--GTYGGNPIACAAALATIETIESEGLVARA 352

>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
           +   VQ G GR GT    F ++   + PD+ T  K +  G P+A V    E+  +    G
Sbjct: 237 IADEVQSGAGRTGT---LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           +    TY GNP++C  A  V++V E ENL + A D+G +L
Sbjct: 294 LG--GTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331

>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
           +   VQ G GR GT    F ++   + PD+ T  K +  G P+A V    E+  +    G
Sbjct: 237 IADEVQSGAGRTGT---LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           +    TY GNP++C  A  V++V E ENL + A D+G +L
Sbjct: 294 LG--GTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331

>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 7/106 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
           +   VQ G GR G  ++A+Q    ++ PD++ + K +G G P+ A++  +E+A+SF  T 
Sbjct: 210 IIDEVQTGIGRTG-EFYAYQ--HFNLKPDVIALAKGLGGGVPIGAILAREEVAQSF--TP 264
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
             + +T+GGNP++C     V++  E E L  H  +VGN      KE
Sbjct: 265 GSHGSTFGGNPLACRAGTVVVD--EVEKLLPHVREVGNYFKEKLKE 308

>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
           +   +Q G GR G     F  +   I+PDI+T+ K +G G P+   +  +E+A+S  + G
Sbjct: 223 ILDEIQTGMGRTGKR---FAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGG 279
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVG 213
             +  T+GGNP++ A   A +  LE   L E A ++G
Sbjct: 280 --HGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELG 314

>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 22/157 (14%)
Query: 76  QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANY------------LREVYKHVQV 123
           Q+ +D IE++G +     AF AE + + GG IIPPA Y            +  +   V  
Sbjct: 208 QEFEDRIESLGPD--TIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVT 265
Query: 124 GFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAK--SFQETGVEYF 180
           GFGR G  W+A + +   ++PDI+T  K + +G+ P+  +  ++ +    S +     +F
Sbjct: 266 GFGRCG-EWFASE-KVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWF 323
Query: 181 N---TYGGNPVSCAVANAVMEVLETENLREHALDVGN 214
               TY   PV+CA A A +E++E E + + A ++ +
Sbjct: 324 TNGYTYSNQPVACAAALANIELMEREGIVDQAREMAD 360

>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 32/167 (19%)
Query: 68  EDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLRE----------- 116
           EDL  K ++DV              CA F E +Q   G +     +L E           
Sbjct: 174 EDLRRKXSEDV--------------CAVFLEPIQGESGIVPATKEFLEEARKLCDEYDAL 219
Query: 117 -VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQET 175
            V+  VQ G GR G   +A+Q  G  ++PD++T  K +G G P+ AVI  +    +  E 
Sbjct: 220 LVFDEVQCGXGRTG-KLFAYQKYG--VVPDVLTTAKGLGGGVPIGAVIVNER--ANVLEP 274
Query: 176 GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
           G ++  T+GGNP++C     V++ L  E   E   + GN L    +E
Sbjct: 275 G-DHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLXKKLQE 320

>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 52  CPDVYRG--KYP-ADKYPDEDL---GVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGG 105
            P++YR    YP  D   D+D+   G   A+   +LI+          A   E +   GG
Sbjct: 200 APEIYRAPVSYPYRDNLLDKDIATDGELAAERAINLIDKQ-IGAANLAAVIIEPIAGEGG 258
Query: 106 QIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPM 153
            I+P   +L  + +             VQ GF R G     F    +++ PD++     +
Sbjct: 259 FIVPADGFLPALQRWCRDNDVVFIADEVQTGFARTGAM---FACDHENVEPDLIVTAXGI 315
Query: 154 GNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
            +G P++AV    EI  +   +G+    T+GGNPV+CA A A +E +E + + E A
Sbjct: 316 ADGFPLSAVTGRAEIMDAPHTSGLG--GTFGGNPVACAAALATIETIERDGMVERA 369

>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
           +    Q G GR GT    F ++   + PD+ T  K +  G P+A V    E+  +    G
Sbjct: 237 IADEAQSGAGRTGT---LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 293
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           +    TY GNP++C  A  V++V E ENL + A D+G +L
Sbjct: 294 LG--GTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331

>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 76/177 (42%), Gaps = 29/177 (16%)
Query: 52  CPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCA-FFAESLQSCGGQIIPP 110
           CP  +R  Y  +   +E    + A+++++ I+   R G    A FFAE +   GG I P 
Sbjct: 195 CPHYWR--YGEEGETEEQFVARLARELEETIQ---REGADTIAGFFAEPVMGAGGVIPPA 249
Query: 111 ANYLREVY------------KHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
             Y + +               V  GFGR G  W        D  PD +   K +  G  
Sbjct: 250 KGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTY---DFTPDAIISSKNLTAGFF 306
Query: 158 PVAAVITTKEIAKSFQETGVEYFN------TYGGNPVSCAVANAVMEVLETENLREH 208
           P+ AVI   E++K   ET +E         T  G+PV CA+A   ++V+  E L E+
Sbjct: 307 PMGAVILGPELSKRL-ETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAEN 362

>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 27/176 (15%)
Query: 52  CPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPA 111
           CP  +R  Y  +   +E    + A+++++ I+  G +      FFAE +   GG I P  
Sbjct: 201 CPHYWR--YGEEGETEEQFVARLARELEETIQREGAD--TIAGFFAEPVXGAGGVIPPAK 256
Query: 112 NYLREVY------------KHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-P 158
            Y + +               V  GFGR G  W        D  PD +   K +  G  P
Sbjct: 257 GYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTY---DFTPDAIISSKNLTAGFFP 313
Query: 159 VAAVITTKEIAKSFQETGVEYFN------TYGGNPVSCAVANAVMEVLETENLREH 208
             AVI   E++K   ET +E         T  G+PV CA+A   ++V+  E L E+
Sbjct: 314 XGAVILGPELSKRL-ETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVXNEGLAEN 368

>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 59  KYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVY 118
           K+  D  PDE  GV  A+ +++ I  +G +  +  AF  E +Q  GG I+PPA Y  E+ 
Sbjct: 190 KHGKDMTPDE-FGVVAARWLEEKILEIGAD--KVAAFVGEPIQGAGGVIVPPATYWPEIE 246
Query: 119 K------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITT 165
           +             V  GFGR G  W+  Q  G    PD+ T  K + +G+ P+ AV   
Sbjct: 247 RICRKYDVLLVADEVICGFGRTG-EWFGHQHFG--FQPDLFTAAKGLSSGYLPIGAVFVG 303
Query: 166 KEIAKSFQETG-VEYFNTYGGNPVSCAVANAVMEVLETENLREHALD 211
           K +A+     G   +  TY G+PV  AVA+A +  L  E + +   D
Sbjct: 304 KRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKD 350

>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 29/177 (16%)
Query: 52  CPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCA-FFAESLQSCGGQIIPP 110
           CP  +R  Y  +   +E    + A+++++ I+   R G    A FFAE +   GG I P 
Sbjct: 201 CPHYWR--YGEEGETEEQFVARLARELEETIQ---REGADTIAGFFAEPVMGAGGVIPPA 255
Query: 111 ANYLREVY------------KHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
             Y + +               V  GFGR G  W        D  PD +     +  G  
Sbjct: 256 KGYFQAILPILRKYDIPVISDEVVCGFGRTGNTWGCVTY---DFTPDAIISSXNLTAGFF 312
Query: 158 PVAAVITTKEIAKSFQETGVEYFN------TYGGNPVSCAVANAVMEVLETENLREH 208
           P+ AVI   E++K   ET +E         T  G+PV CA+A   ++V+  E L E+
Sbjct: 313 PMGAVILGPELSKRL-ETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAEN 368

>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 71  GVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLRE------------VY 118
           G+  A ++  LIE    +     A F E L    G ++PP  YL+             V+
Sbjct: 201 GIALADELLKLIEL--HDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVF 258
Query: 119 KHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQ---- 173
             V  GFGR G+    F      + PD++ + K + NG  P+ AVI + EI ++F     
Sbjct: 259 DEVITGFGRTGS---MFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPT 315
Query: 174 -ETGVEYFN--TYGGNPVSCAVANAVMEVLETENLREHALDVG----NQLHTPKKENN 224
            E  VE+ +  TY  +PV+CA   A + +L+ ENL +   +V       LH  K   N
Sbjct: 316 PEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKN 373

>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 27/176 (15%)
Query: 52  CPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCA-FFAESLQSCGGQIIPP 110
           CP  +R  Y  +   +     + A++++D I    R G    A FFAE +   GG I P 
Sbjct: 193 CPHYWR--YGEEGETEAQFVARLARELEDTIT---REGADTIAGFFAEPVMGAGGVIPPA 247
Query: 111 ANYLREVY------------KHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
             Y + +               V  GFGR G  W        D +PD +     +  G  
Sbjct: 248 KGYFQAILPILRKYDIPMISDEVICGFGRTGNTWGCLTY---DFMPDAIISSXNLTAGFF 304
Query: 158 PVAAVITTKEIAKSFQET--GVEYF---NTYGGNPVSCAVANAVMEVLETENLREH 208
           P+ AVI   ++AK  +     +E F    T  G+PV CA+A   ++V+  E L E+
Sbjct: 305 PMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAEN 360

>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 63  DKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK--- 119
           ++Y    L ++Y  D + L E + R G+   A   E +    G ++P  ++L+ +++   
Sbjct: 172 EEYAKLTLVLEY-NDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEAKA 230
Query: 120 --------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKS 171
                    V  GF R+     A +L G  + PD+VT+GK +G G P AA    +EI + 
Sbjct: 231 YGVLLIADEVMTGF-RL-AFGGATELLG--LKPDLVTLGKILGGGLPAAAYAGRREIMEK 286
Query: 172 FQETGVEY-FNTYGGNPVSCAVANAVMEVLETENLREHAL--DVGNQLHTPKKE 222
               G  Y   T  GNP++ A   A +E+LE EN   +A   D+G +L    KE
Sbjct: 287 VAPLGPVYQAGTLSGNPLAMAAGLATLELLE-ENPGYYAYLEDLGARLEAGLKE 339

>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 93  CAFFAESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAFQLQGD 140
            A   E +   GG ++P   +L  + K             VQ GF R G     F  + +
Sbjct: 230 AAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTGA---LFACEHE 286
Query: 141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL 200
           +++PD++   K +  G P++AV    EI    Q  G+        NP++CA A AV++ +
Sbjct: 287 NVVPDLIVTAKGIAGGLPLSAVTGRAEIMDGPQSGGLGGTYGG--NPLACAAALAVIDTI 344
Query: 201 ETENLREHALDVGNQL 216
           E ENL   A  +G  +
Sbjct: 345 ERENLVARARAIGETM 360

>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 75/174 (43%), Gaps = 25/174 (14%)
Query: 52  CPDVYRGKYPADKYPDED----LGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQI 107
            P+VYR   PA  YP  D     G + A+     IE      +   A   E +Q  GG I
Sbjct: 186 APEVYR--MPA-SYPLRDEPGLTGEEAARRAISRIETQ-IGAQSLAAIIIEPIQGEGGFI 241
Query: 108 IPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGN 155
           +P   +L              +   VQ GF R G  W+A + +G  I+PDIVT+   +  
Sbjct: 242 VPAPGFLATLTAWASENGVVFIADEVQTGFARTGA-WFASEHEG--IVPDIVTMAXGIAG 298
Query: 156 GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
           G P++AV    E+  +    G+        NPV+CA A A + V+   +L   A
Sbjct: 299 GMPLSAVTGRAELMDAVYAGGLGGTYGG--NPVTCAAAVAALGVMRELDLPARA 350

>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 19/170 (11%)
Query: 64  KYPDEDLGVKYAQDVQDLIEAMGRNGKRP-CAFFAESLQSCGGQIIPPANYLRE------ 116
           K P  D     A+D + L   + R G     AF AE +       + PA    E      
Sbjct: 162 KLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDIC 221
Query: 117 -------VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEI 168
                  +   V  G GR G+     +  G  + PDI  +GK +  G+ P+A ++   ++
Sbjct: 222 DEAGIIFIADEVMSGMGRCGSPLALSRWSG--VTPDIAVLGKGLAAGYAPLAGLLAAPQV 279
Query: 169 AKSFQETGVEYFN--TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
            ++       + +  TY G+PVS A   +V++++E E+L   A + G QL
Sbjct: 280 YETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQL 329

>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 18/124 (14%)
Query: 94  AFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDD 141
           A F E +QS GG I+PP  +LR+            V   V+VG  R G     F+ +G  
Sbjct: 204 AAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEG-- 260
Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE 201
            +PDI+ +GK +G G P++AVI   EI        ++   T  GNP+S A   AV+E ++
Sbjct: 261 FVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQ---TLHGNPISAAAGLAVLETID 317
Query: 202 TENL 205
            ++L
Sbjct: 318 RDDL 321

>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 18/124 (14%)
Query: 94  AFFAESLQSCGGQIIPPANYLRE------------VYKHVQVGFGRVGTHWWAFQLQGDD 141
           A F E +QS GG I+PP  +LR+            V   V+VG  R G     F+ +G  
Sbjct: 217 AAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEG-- 273
Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE 201
            +PDI+ +GK +G G P++AVI   EI        ++   T  GNP+S A   AV+E ++
Sbjct: 274 FVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQ---TLHGNPISAAAGLAVLETID 330
Query: 202 TENL 205
            ++L
Sbjct: 331 RDDL 334

>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 59/140 (42%), Gaps = 16/140 (11%)
Query: 95  FFAESLQSCGG-QIIPPANY--LRE---------VYKHVQVGFGRVGTHWWAFQLQGDDI 142
           F AE +Q  GG +   P  +  +RE         ++  VQ G G  GT W   QL   D+
Sbjct: 235 FVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQL---DV 291
Query: 143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET 202
            PDIV  GK       V A     E+A +         +T+GGN      A  ++EV+E 
Sbjct: 292 APDIVAFGKKT-QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEA 350
Query: 203 ENLREHALDVGNQLHTPKKE 222
           E L E A+  G  L     E
Sbjct: 351 EGLFERAVQHGKYLRARLDE 370

>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 20/172 (11%)
Query: 52  CPDVYRG--KYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
            P+VYR    YP  +   E  G + A+    +IE     G +  A   E +Q  GG I+P
Sbjct: 186 APEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQ-IGGDQVAAIIIEPIQGEGGFIVP 244
Query: 110 PANYL-------RE-----VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
              +L       +E     +   VQ GF R G  W+A   +G  ++PDI+T+ K +  G 
Sbjct: 245 AEGFLPALSEWAKEKGIVFIADEVQSGFCRTG-EWFAVDHEG--VVPDIITMAKGIAGGL 301
Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHA 209
           P++A+    ++  +    G+        NPV+CA A A ++ +E  +L   A
Sbjct: 302 PLSAITGRADLLDAVHPGGLGGTYGG--NPVACAAALAAIDTMEQHDLNGRA 351

>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 9/150 (6%)
Query: 76  QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKHVQ-----VGFGRVGT 130
            +V+ L EA+ + G    A   E +    G + P   +L +V + V      V +  V T
Sbjct: 187 NNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVIT 246
Query: 131 HWWAFQLQGDDII---PDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGN 186
            +        D++   PD+  +G  +G G P+ A    KEI +     G  Y   T  GN
Sbjct: 247 AFRFXYGGAQDLLGVTPDLTALGXVIGGGLPIGAYGGKKEIXEQVAPLGPAYQAGTXAGN 306
Query: 187 PVSCAVANAVMEVLETENLREHALDVGNQL 216
           P S A   A +EVL+ E L E   ++G  L
Sbjct: 307 PASXASGIACLEVLQQEGLYEKLDELGATL 336

>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
           ++  VQ G G  GT W   QL   D+ PDIV  GK       V A     E+A +     
Sbjct: 269 IFDEVQTGCGLTGTAWAYQQL---DVAPDIVAFGKKT-QVCGVMAGRRVDEVADNVFAVP 324
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
               +T+GGN      A  ++EV+E E L E A+  G  L     E
Sbjct: 325 SRLASTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDE 370

>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 26/200 (13%)
Query: 33  SEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLG--VKYAQDVQDLIEAMGRNGK 90
           S+A H I  P    S + P     R KYP +++  E+     +  ++V+DLI    +  K
Sbjct: 202 SKAIHKIDIP----SFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKK 257
Query: 91  RPCAFFAESLQSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQ 138
                  E +QS GG      ++ R++     KH        VQ G G  G  +WA +  
Sbjct: 258 TVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK-FWAHEHW 316
Query: 139 GDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVME 198
           G D   D++T  K M  G         +E   +        FNT+ G+P    +   V+ 
Sbjct: 317 GLDDPADVMTFSKKMMTG----GFFHKEEFRPN---APYRIFNTWLGDPSKNLLLAEVIN 369
Query: 199 VLETENLREHALDVGNQLHT 218
           +++ E+L  +A   G  L T
Sbjct: 370 IIKREDLLSNAAHAGKVLLT 389

>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
           ++  VQ G G  GT W   QL   D+ PDIV  GK       V A     E+A +     
Sbjct: 269 IFDEVQTGCGLTGTAWAYQQL---DVAPDIVAFGKKT-QVCGVMAGRRVDEVADNVFAVP 324
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
               +T+GGN      A  ++EV+E E L E A+  G  L     E
Sbjct: 325 SRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDE 370

>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQET 175
           ++  +  GFGR G     F      + PDI+ VGK +  G+  +AA + T ++A +    
Sbjct: 252 IFDEIATGFGRTGA---LFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAG 308
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
                    T+  NP++CAV+ A +E+L  ++ R    ++   L
Sbjct: 309 AAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGL 352

>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQET 175
           ++  +  GFGR G     F      + PDI+ VGK +  G+  +AA + T ++A +    
Sbjct: 272 IFDEIATGFGRTGA---LFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAG 328
Query: 176 G---VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
               + +  T+  NP++CAV+ A +E+L  ++ R    ++   L
Sbjct: 329 AAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGL 372

>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQET 175
           ++  +  GFGR G     F      + PDI+ VGK +  G+  +AA + T ++A +    
Sbjct: 277 IFDEIATGFGRTGA---LFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAG 333
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
                    T+  NP++CAV+ A +E+L  ++ R    ++   L
Sbjct: 334 AAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGL 377

>pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
           +   +  GFGR G     F  +  +I PDI+ +GK +  G   ++A +TT+E+A++  + 
Sbjct: 243 IADEIATGFGRTGK---LFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
               F    T+ GNP++CA ANA + +LE+ + ++   D+  QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
           ++  VQ G G  GT W   QL   D+ PDIV  GK       V A     E+A +     
Sbjct: 269 IFDEVQTGCGLTGTAWAYQQL---DVAPDIVAFGKKT-QVCGVMAGRRVDEVADNVFAVP 324
Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
               +++GGN      A  ++EV+E E L E A+  G  L     E
Sbjct: 325 SRLNSSWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDE 370

>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
           +   +  GFGR G     F  +  +I PDI+ +GK +  G   ++A +TT+E+A++    
Sbjct: 243 IADEIATGFGRTGK---LFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
               F    T+ GNP++CA ANA + +LE+ + ++   D+  QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
           +   +  GFGR G     F  +  +I PDI+ +GK +  G   ++A +TT+E+A++    
Sbjct: 243 IADEIATGFGRTGK---LFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
               F    T+ GNP++CA ANA + +LE+ + ++   D+  QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
           +   +  GFGR G     F  +  +I PDI+ +G  +  G   ++A +TT+E+A++    
Sbjct: 243 IADEIATGFGRTGK---LFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
               F    T+ GNP++CA ANA + +LE+ + ++   D+  QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
           +   +  GFGR G     F  +  +I PDI+ +G  +  G   ++A +TT+E+A++    
Sbjct: 243 IADEIATGFGRTGK---LFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
               F    T+ GNP++CA ANA + +LE+ + ++   D+  QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
           +   +  GFGR G     F  +  +I PDI+ +G  +  G   ++A +TT+E+A++    
Sbjct: 243 IADEIATGFGRTGK---LFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
               F    T+ GNP++CA ANA + +LE+ + ++   D+  QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
           +   +  GFG  G     F  +  +I PDI+ +GK +  G   ++A +TT+E+A++    
Sbjct: 243 IADEIATGFGATGK---LFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
               F    T+ GNP++CA ANA + +LE+ + ++   D+  QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 23/144 (15%)
Query: 76  QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYL-------RE-----VYKHVQV 123
            DV+ L       G R      E + +  G I P   +L       RE     +   V  
Sbjct: 188 NDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT 247
Query: 124 GF--GRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFN 181
           GF  G  G   + F ++GD     I+ +GK +G G PV AV  ++E+       G + FN
Sbjct: 248 GFRLGLEGAQGY-FNIEGD-----IIVLGKIIGGGFPVGAVAGSREVMSLLTPQG-KVFN 300
Query: 182 --TYGGNPVSCAVANAVMEVLETE 203
             T+  +P++ A   A ++ LE E
Sbjct: 301 AGTFNAHPITMAAGLATLKALEEE 324

>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 117 VYKHVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET 175
           +   +  GFG+ G     F  +  +I PDI+ +G  +  G   ++A +TT+E+A++    
Sbjct: 243 IADEIATGFGKTGK---LFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNG 299
Query: 176 GVEYFN---TYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
               F    T+ GNP++CA ANA + +LE+ + ++   D+  QL
Sbjct: 300 EAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343

>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FNTYGGNPVSCAVANAVMEVL 200
           +IPD+  +GK +G G PV A    +E+  +   TG  Y   T  GNP++ A   A +  +
Sbjct: 259 VIPDLTCLGKIIGGGXPVGAFGGRREVXNALAPTGPVYQAGTLSGNPIAXAAGFACLTEI 318
Query: 201 ETENLREHALDVGNQL-----HTPKKEN 223
               + E   ++ + L     H  K+EN
Sbjct: 319 SQVGVYETLTELTDSLATGLRHAAKEEN 346

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	4e-51
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	1e-10
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	7e-44
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	9e-10
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	6e-39
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	4e-07
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	2e-38
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	1e-08
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	4e-38
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	2e-07
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	4e-37
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	7e-06
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	2e-36
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	6e-07
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	7e-36
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	3e-06
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	1e-35
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	2e-34
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	4e-05
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	9e-34
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	1e-33
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	1e-33
3hmu_A	472	Aminotransferase, class III; structural genomics,	2e-33
3hmu_A	472	Aminotransferase, class III; structural genomics,	1e-05
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	2e-33
1z7d_A	433	Ornithine aminotransferase; structural genomics co	2e-33
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	6e-33
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	3e-32
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	3e-32
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	2e-05
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	5e-32
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	3e-04
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	2e-31
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	3e-31
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	7e-05
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	2e-30
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	9e-30
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	1e-29
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	1e-26
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	1e-24
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	1e-22
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	3e-05
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	4e-04

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score =  170 bits (433), Expect = 4e-51
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 20/180 (11%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
            P P  YR ++  +   D    +       DLI+          AF AE + S GG I  
Sbjct: 167 IPAPFTYRPRFERNGAYD---YLAELDYAFDLIDRQS--SGNLAAFIAEPILSSGGIIEL 221

Query: 110 PANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           P  Y+  + +              Q G GR G   +A Q   D + PDI+T+ K +G G 
Sbjct: 222 PDGYMAALKRKCEARGMLLILDEAQTGVGRTG-TMFACQ--RDGVTPDILTLSKTLGAGL 278

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
           P+AA++T+  I +   E G  ++ T+  +P+  AV   V++V++ + L   A  +G++L 
Sbjct: 279 PLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLR 338

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
           M R+  IGDVRG GL +GVE+V  R+ K PA      +   
Sbjct: 345 MERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRE 385

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score =  151 bits (384), Expect = 7e-44
 Identities = 52/179 (29%), Positives = 78/179 (43%), Gaps = 24/179 (13%)

Query: 53  PDVYRGKYPADKY---PDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIP 109
             +    YP D Y    ++  G      + + + A+        A F E +QS GG I+P
Sbjct: 163 DGLILLPYP-DPYRPYRNDPTGDAILTLLTEKLAAVP--AGSIGAAFIEPIQSDGGLIVP 219

Query: 110 PANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH 157
           P  +LR+       H        V+VG  R G     F+ +G   +PDI+ +GK +G G 
Sbjct: 220 PDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEG--FVPDILVLGKGLGGGL 276

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           P++AVI   EI             T  GNP+S A   AV+E ++ ++L   A   G  L
Sbjct: 277 PLSAVIAPAEILDCASAF---AMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLL 332

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score = 56.8 bits (138), Expect = 9e-10
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
             R+PLIGD+RG GL  G+ELV  R+ + PA +E   +I R
Sbjct: 340 AKRHPLIGDIRGRGLACGMELVCDRQSREPARAETAKLIYR 380

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score =  138 bits (350), Expect = 6e-39
 Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 25/198 (12%)

Query: 37  HVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFF 96
                P          PD YR         +    V+  ++V  ++           AF 
Sbjct: 166 RYQYEPFASGFLHVTPPDCYRMPGIER---ENIYDVECVKEVDRVMTWELSE--TIAAFI 220

Query: 97  AESLQSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIP 144
            E + + GG ++ P +Y++ V+    KH        V  GFGR G   + F     D+ P
Sbjct: 221 MEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTG-KAFGFMN--YDVKP 277

Query: 145 DIVTVGKPMGNGH-PVAAVITTKEIAKSFQETG-VEYFN---TYGGNPVSCAVANAVMEV 199
           DI+T+ K + + + P++A    +EI ++F+  G  E+F    T+GGNP +CA+A   +E+
Sbjct: 278 DIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEI 337

Query: 200 LETENLREHALDVGNQLH 217
           +E ENL E +  +G+ L 
Sbjct: 338 IENENLIERSAQMGSLLL 355

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score = 48.7 bits (117), Expect = 4e-07
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
           +  +PL+GD+RG GL VG+ELV  ++ K P  ++    +  
Sbjct: 362 IGEHPLVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVN 402

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score =  136 bits (346), Expect = 2e-38
 Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 20/176 (11%)

Query: 53  PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPAN 112
             VYR  YP    P   +    A      I       +   A   E +Q  GG       
Sbjct: 164 GHVYRALYP---CPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPA 220

Query: 113 YLREVYK----H--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVA 160
           +++ +      H        VQ G GR GT  +A +  G  + PD+ T  K +  G P+A
Sbjct: 221 FMQRLRALCDEHGIMLIADEVQSGAGRTGT-LFAMEQMG--VAPDLTTFAKSIAGGFPLA 277

Query: 161 AVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
            V    E+  +    G     TY GNP++C  A  V++V E ENL + A D+G +L
Sbjct: 278 GVTGRAEVMDAVAPGG--LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKL 331

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 2   ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
            ++P IGDVRG+G  + +EL        P       ++ R
Sbjct: 340 EKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVAR 379

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score =  136 bits (344), Expect = 4e-38
 Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 24/182 (13%)

Query: 53  PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGR------NGKRPCAFFAESLQSCGGQ 106
           P++YR       + D + G + A D +   +                A   E +Q  GG 
Sbjct: 184 PEIYRAPLS-YPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGF 242

Query: 107 IIPPANYLREVYK----H--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMG 154
           I+P   +L  +      +        VQ GF R G   +A + +G  I PD++   K + 
Sbjct: 243 IVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA-MFACEHEG--IDPDLIVTAKGIA 299

Query: 155 NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGN 214
            G P++AV    EI  S   +G     TYGGNP++CA A A +E +E+E L   A  +  
Sbjct: 300 GGLPLSAVTGRAEIMDSPHVSG--LGGTYGGNPIACAAALATIETIESEGLVARAQQIEK 357

Query: 215 QL 216
            +
Sbjct: 358 IM 359

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 2   ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
           A    IGDVRG G  + +ELV       P     + +   
Sbjct: 368 AEDDRIGDVRGRGAMIAMELVK-AGTTEPDADLTKALCAG 406

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score =  133 bits (338), Expect = 4e-37
 Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 25/205 (12%)

Query: 31  ATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGK 90
            T +  + +   P+       CP  +R  Y  +   +E    + A+++++ I+  G +  
Sbjct: 174 MTGKPYNSVFGLPLPGFVHLTCPHYWR--YGEEGETEEQFVARLARELEETIQREGAD-- 229

Query: 91  RPCAFFAESLQSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQ 138
               FFAE +   GG I P   Y + +     K+        V  GFGR G + W     
Sbjct: 230 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG-NTWGCVT- 287

Query: 139 GDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQE--TGVEYFN---TYGGNPVSCAV 192
             D  PD +   K +  G  P+ AVI   E++K  +     +E F    T  G+PV CA+
Sbjct: 288 -YDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAI 346

Query: 193 ANAVMEVLETENLREHALDVGNQLH 217
           A   ++V+  E L E+   +  +  
Sbjct: 347 ALKAIDVVMNEGLAENVRRLAPRFE 371

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTP 30
           +A  P IG+ RGIG    +E V  +  KTP
Sbjct: 377 IAERPNIGEYRGIGFMWALEAVKDKASKTP 406

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score =  132 bits (334), Expect = 2e-36
 Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 19/177 (10%)

Query: 53  PDVYRGKYP-ADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPA 111
           P+VYR       +      G + A+     IE      +   A   E +Q  GG I+P  
Sbjct: 187 PEVYRMPASYPLRDEPGLTGEEAARRAISRIETQ-IGAQSLAAIIIEPIQGEGGFIVPAP 245

Query: 112 NYLREVYK----H--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPV 159
            +L  +      +        VQ GF R G  W+A + +G  I+PDIVT+ K +  G P+
Sbjct: 246 GFLATLTAWASENGVVFIADEVQTGFARTG-AWFASEHEG--IVPDIVTMAKGIAGGMPL 302

Query: 160 AAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           +AV    E+  +    G     TYGGNPV+CA A A + V+   +L   A  +   +
Sbjct: 303 SAVTGRAELMDAVYAGG--LGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASV 357

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 2   ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
               +IG+VRG G  + +E+V       P  +  + +   
Sbjct: 366 EEVDIIGEVRGRGAMLAIEIVK-PGTLEPDAALTKSIAAE 404

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score =  130 bits (329), Expect = 7e-36
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 25/194 (12%)

Query: 42  PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQ 101
            P         P  +R         +E      A  ++++I A G       AF  E + 
Sbjct: 176 LPRAPVLHTEAPYYFR--RTDRSMSEEQFSQHCADKLEEMILAEGPE--TIAAFIGEPIL 231

Query: 102 SCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTV 149
             GG + PPA Y  ++     K+        V  GFGR+G   +        I PD++T+
Sbjct: 232 GTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG-TMFGSDH--YGIKPDLITI 288

Query: 150 GKPMGNGH-PVAAVITTKEIAKSFQE--TGVEYFN---TYGGNPVSCAVANAVMEVLETE 203
            K + + + P++ VI    + +   +    +       TY  +P+  A   A +E+++  
Sbjct: 289 AKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEM 348

Query: 204 NLREHALDVGNQLH 217
           +L  +A + G    
Sbjct: 349 DLVTNAGETGAYFR 362

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTP 30
           +  +  +G+VRG G+   VE V  +  +  
Sbjct: 369 VGGHKNVGEVRGDGMLAAVEFVADKDDRVF 398

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score =  129 bits (327), Expect = 1e-35
 Identities = 40/176 (22%), Positives = 59/176 (33%), Gaps = 16/176 (9%)

Query: 53  PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPAN 112
                  Y      +  +    A+ ++    A          F AE +Q  GG       
Sbjct: 193 WPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPE 252

Query: 113 YLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVA 160
           +   +     +         VQ G G  GT  WA+Q     + PDIV  GK       +A
Sbjct: 253 FFAAMRELCDEFDALLIFDEVQTGCGLTGT-AWAYQQLD--VAPDIVAFGKKTQVCGVMA 309

Query: 161 AVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
                +     F        +T+GGN      A  ++EV+E E L E A+  G  L
Sbjct: 310 GRRVDEVADNVFAVPS-RLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYL 364

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score =  126 bits (319), Expect = 2e-34
 Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 27/201 (13%)

Query: 37  HVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFF 96
             +   P++     P   +    Y       ++ G+  A ++  LIE          A F
Sbjct: 169 RKLFGQPMQDVDHLPHTLLASNAYSRGM--PKEGGIALADELLKLIELHD--ASNIAAVF 224

Query: 97  AESLQSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIP 144
            E L    G ++PP  YL+       +H        V  GFGR G   +     G  + P
Sbjct: 225 VEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-SMFGADSFG--VTP 281

Query: 145 DIVTVGKPMGNGH-PVAAVITTKEIAKSF-----QETGVEYFN--TYGGNPVSCAVANAV 196
           D++ + K + NG  P+ AVI + EI ++F      E  VE+ +  TY  +PV+CA   A 
Sbjct: 282 DLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAA 341

Query: 197 MEVLETENLREHALDVGNQLH 217
           + +L+ ENL +   +V     
Sbjct: 342 LCLLQKENLVQSVAEVAPHFE 362

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 6/48 (12%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQH------VITRP 42
           +     + D+R  GL   +++            EA           R 
Sbjct: 368 IKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRF 415

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score =  124 bits (313), Expect = 9e-34
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 23/181 (12%)

Query: 50  APCPDVYRGKYPADKYPDEDLGVKYAQD-VQDLIEAMGRNGKRPCAFFAESLQSCGGQII 108
            P P+ YR  +  + Y +    V    + ++D I       +     F E +Q  GG +I
Sbjct: 170 VPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVI 229

Query: 109 PPANYLREVYK----H--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG 156
           PP N+  E+ K    +        VQ+G GR G   +A +      +PD++T+ K +G G
Sbjct: 230 PPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK-LFAIENFN--TVPDVITLAKALGGG 286

Query: 157 H-PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQ 215
             P+ A I  K++            NT+GGN ++CA+ + V++++  ++L  H  ++G  
Sbjct: 287 IMPIGATIFRKDLDFKPGMHS----NTFGGNALACAIGSKVIDIV--KDLLPHVNEIGKI 340

Query: 216 L 216
            
Sbjct: 341 F 341

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score =  123 bits (311), Expect = 1e-33
 Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 26/162 (16%)

Query: 71  GVKYAQ--DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK----H---- 120
            V++    DV+ L  A+        A   E +Q  GG       +LR   +         
Sbjct: 166 PVEFIPYNDVEALKRAVDEE---TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALL 222

Query: 121 ----VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQ--E 174
               +Q G GR G   +AF+     I+PDI+T+ K +G G P+   +  +E+A+S     
Sbjct: 223 ILDEIQTGMGRTG-KRFAFE--HFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGG 279

Query: 175 TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
            G     T+GGNP++ A   A +  LE   L E A ++G   
Sbjct: 280 HG----TTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWF 317

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score =  124 bits (314), Expect = 1e-33
 Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 29/183 (15%)

Query: 53  PDVYRGKYPADKYPDEDLGVKYAQ-------DVQDLIEAMGRNGKRPCAFFAESLQSCGG 105
             +    +P  KYP E+   +  Q       +V+DLI    +  K       E +QS GG
Sbjct: 215 WPIAP--FPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGG 272

Query: 106 QIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPM 153
                 ++ R++     KH        VQ G G  G  +WA +  G D   D++T  K M
Sbjct: 273 DNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK-FWAHEHWGLDDPADVMTFSKKM 331

Query: 154 GNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVG 213
             G          E  +      +  FNT+ G+P    +   V+ +++ E+L  +A   G
Sbjct: 332 MTGGFFHK-----EEFRPNAPYRI--FNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAG 384

Query: 214 NQL 216
             L
Sbjct: 385 KVL 387

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score =  124 bits (313), Expect = 2e-33
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 21/179 (11%)

Query: 51  PCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
             P+ +      D    E+ G+  A+++++ I  +G    R  AF AE +Q  GG I+ P
Sbjct: 188 NQPNWWAEGGDMD---PEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAP 242

Query: 111 ANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
            +Y  E+     K+        V  GFGR G +W+  Q     I P I+T+ K + +G+ 
Sbjct: 243 DSYWPEIQRICDKYDILLIADEVICGFGRTG-NWFGTQT--MGIRPHIMTIAKGLSSGYA 299

Query: 158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
           P+   I   E+A    +    +  TY G+PV+ AVA   + +LE EN+ +H  +V    
Sbjct: 300 PIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPY 358

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 7/41 (17%), Positives = 18/41 (43%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
           +  +PL+G+ + +G+   + L   +  +    SE   +   
Sbjct: 366 LTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYI 406

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439

 Score =  123 bits (311), Expect = 2e-33
 Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 24/156 (15%)

Query: 77  DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVY----KH--------VQVG 124
           D+  L  A+        AF  E +Q   G ++P   YL  V     +H        +Q G
Sbjct: 211 DLPALERAL--QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTG 268

Query: 125 FGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQ--ETGVEYFN 181
             R G  W A     +++ PDIV +GK +  G +PV+AV+   +I  + +  E G    +
Sbjct: 269 LARTGR-WLAVD--YENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHG----S 321

Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
           TYGGNP+ C VA A +EVLE ENL E+A  +G  L 
Sbjct: 322 TYGGNPLGCRVAIAALEVLEEENLAENADKLGIILR 357

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433

 Score =  123 bits (310), Expect = 2e-33
 Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 24/156 (15%)

Query: 77  DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVY----KH--------VQVG 124
           D++ L E +       CAF  E +Q   G I+P  NYL+ VY    K+        VQ G
Sbjct: 200 DLEALEEEL--KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTG 257

Query: 125 FGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQ--ETGVEYFN 181
            GR G           ++ PD++ +GK +  GH P++AV+   +I    +  E G    +
Sbjct: 258 LGRTGK-LLCVH--HYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHG----S 310

Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
           TYGGNP++ ++    + VL  E L E+A  +G    
Sbjct: 311 TYGGNPLAASICVEALNVLINEKLCENAEKLGGPFL 346

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392

 Score =  121 bits (306), Expect = 6e-33
 Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 25/156 (16%)

Query: 77  DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVY----KH--------VQVG 124
           D++ L  A+  N     AF  E +Q   G  IPPA +L+E      K         +Q G
Sbjct: 171 DLEALKAAITPN---TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTG 227

Query: 125 FGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQ--ETGVEYFN 181
            GR G   +A       + PD+  +GK +G G  P++     ++I   F+    G    +
Sbjct: 228 LGRTGK-VFACDWDN--VTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHG----S 280

Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
           T+GGNP++CAV+ A +EVLE E L E +L +G +L 
Sbjct: 281 TFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLV 316

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score =  120 bits (303), Expect = 3e-32
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 29/201 (14%)

Query: 37  HVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFF 96
           H +  P +  S +AP P VYR +        ++   +  +++  L+E    + +   A  
Sbjct: 163 HHVYGPLMFESYKAPIPYVYRSESGDP----DECRDQCLRELAQLLE---EHHEEIAALS 215

Query: 97  AESL-QSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDII 143
            ES+ Q   G I+ P  YL  V      +        V  GFGR G   +A + +   + 
Sbjct: 216 IESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK-MFACEHEN--VQ 272

Query: 144 PDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEY--F---NTYGGNPVSCAVANAVM 197
           PD++  GK +  G+ P+A    T++I K+F +       F   ++Y GN + CAVA   +
Sbjct: 273 PDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENL 332

Query: 198 EVLETENLREHALDVGNQLHT 218
            + E+EN+ E   +   +LH 
Sbjct: 333 ALFESENIVEQVAEKSKKLHF 353

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score =  120 bits (303), Expect = 3e-32
 Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 24/174 (13%)

Query: 51  PCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
             P  Y+          ++ GV  A+ +++ I  +G    +  AF  E +Q  GG I+PP
Sbjct: 184 EQPWWYKHGKDMT---PDEFGVVAARWLEEKILEIG--ADKVAAFVGEPIQGAGGVIVPP 238

Query: 111 ANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
           A Y  E+     K+        V  GFGR G  W+  Q       PD+ T  K + +G+ 
Sbjct: 239 ATYWPEIERICRKYDVLLVADEVICGFGRTG-EWFGHQH--FGFQPDLFTAAKGLSSGYL 295

Query: 158 PVAAVITTKEIAKSFQETGVEYFN--TYGGNPVSCAVANAVMEVLETENLREHA 209
           P+ AV   K +A+     G ++ +  TY G+PV  AVA+A +  L  E + +  
Sbjct: 296 PIGAVFVGKRVAEGLIAGG-DFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRV 348

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQ 36
            +R+  + DVRG+G+     LV  + ++       +
Sbjct: 364 FSRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGE 399

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score =  119 bits (301), Expect = 5e-32
 Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 27/178 (15%)

Query: 60  YPADKYPD-EDLGVKYAQDVQDLIEAMGRNGKRP---CAFFAESLQ-SCGGQIIPPANYL 114
           +P    PD    G + A+ ++ L+E  G     P    AF AE +  +    + P   Y 
Sbjct: 160 WPKLPKPDPARNGAEDAEGLRALLEREG-----PETVAAFMAEPVVGASDAALAPAPGYY 214

Query: 115 REVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAA 161
             V     +         V  G GR G+   A   +   + PDI  +GK +  G+ P+A 
Sbjct: 215 ERVRDICDEAGIIFIADEVMSGMGRCGS-PLALS-RWSGVTPDIAVLGKGLAAGYAPLAG 272

Query: 162 VITTKEIAKSFQETGVEYF--NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
           ++   ++ ++       +    TY G+PVS A   +V++++E E+L   A + G QL 
Sbjct: 273 LLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLL 330

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQH 37
            AR+P +  VRG GL +GV  +          +    
Sbjct: 337 QARFPQMMQVRGTGLLLGVV-LGDLATGQAFETPGIA 372

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score =  118 bits (297), Expect = 2e-31
 Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 30/165 (18%)

Query: 71  GVKYAQ--DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK----H---- 120
            + +    D+  +   M       CA   E +Q  GG       +L+ +      H    
Sbjct: 182 DIIHVPFNDLHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALL 238

Query: 121 ----VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQE-- 174
               VQ G GR G   +A+   G  + PDI+T  K +G G PV+A++TT+EIA +F    
Sbjct: 239 VFDEVQCGMGRTGD-LFAYMHYG--VTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGS 295

Query: 175 --TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
             +      TYGGNP++CAVA A  +++ T  + +       Q  
Sbjct: 296 HGS------TYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFV 334

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score =  118 bits (297), Expect = 3e-31
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 26/185 (14%)

Query: 51  PCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPP 110
             P+       A     E       Q+ +D IE++G       AF AE + + GG IIPP
Sbjct: 187 SSPNPRH----AGNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPP 240

Query: 111 ANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH- 157
           A Y         KH        V  GFGR G  W+A + +   ++PDI+T  K + +G+ 
Sbjct: 241 AGYHARFKAICEKHDILYISDEVVTGFGRCG-EWFASE-KVFGVVPDIITFAKGVTSGYV 298

Query: 158 PVAAVITTKEIAKSFQ---ETGVEYFN--TYGGNPVSCAVANAVMEVLETENLREHALDV 212
           P+  +  ++ +          G  + N  TY   PV+CA A A +E++E E + + A ++
Sbjct: 299 PLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREM 358

Query: 213 GNQLH 217
            +   
Sbjct: 359 ADYFA 363

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score = 42.2 bits (100), Expect = 7e-05
 Identities = 5/33 (15%), Positives = 12/33 (36%)

Query: 4   YPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQ 36
            P + + R +GL   V+ +    +      +  
Sbjct: 372 LPGVAETRSVGLVGCVQCLLDPTRADGTAEDKA 404

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395

 Score =  114 bits (289), Expect = 2e-30
 Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 21/160 (13%)

Query: 71  GVKYAQ--DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-------- 120
           GVK+A+  D+  + + +    ++ CA   ES+Q  GG      ++ + + K         
Sbjct: 160 GVKFAKYNDISSVEKLVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILL 216

Query: 121 ----VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG 176
               +Q G GR G  ++A++     I+PDI+T  K +G G  V A +  +++A +  E G
Sbjct: 217 IADEIQCGMGRSGK-FFAYEHAQ--ILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAG 273

Query: 177 VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
            ++ +TYGGNP+ CA  NAV E+ + E + E+   +   L
Sbjct: 274 -DHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYL 312

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397

 Score =  113 bits (284), Expect = 9e-30
 Identities = 50/162 (30%), Positives = 74/162 (45%), Gaps = 27/162 (16%)

Query: 71  GVKYAQ--DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-------- 120
           G +Y +  +V+DL   M    +  CA F E +Q   G +     +L E  K         
Sbjct: 164 GFEYFEFNNVEDLRRKMS---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALL 220

Query: 121 ----VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQ--E 174
               VQ G GR G   +A+Q  G  ++PD++T  K +G G P+ AVI   E A   +  +
Sbjct: 221 VFDEVQCGMGRTGK-LFAYQKYG--VVPDVLTTAKGLGGGVPIGAVIVN-ERANVLEPGD 276

Query: 175 TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
            G     T+GGNP++C     V++ L  E   E   + GN L
Sbjct: 277 HG----TTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYL 314

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375

 Score =  112 bits (283), Expect = 1e-29
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 28/162 (17%)

Query: 71  GVKYAQ--DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-------- 120
           G  YA+  D+  + + +    +       E +Q  GG      ++L ++ +         
Sbjct: 153 GFSYAKLNDIDSVYKLLD---EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLL 209

Query: 121 ----VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQ--E 174
               VQ G GR G  ++A+Q     + PD++ + K +G G P+ A++  +E+A+SF    
Sbjct: 210 IIDEVQTGIGRTGE-FYAYQHFN--LKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGS 266

Query: 175 TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL 216
            G    +T+GGNP++C     V++ +  E L  H  +VGN  
Sbjct: 267 HG----STFGGNPLACRAGTVVVDEV--EKLLPHVREVGNYF 302

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429

 Score =  104 bits (263), Expect = 1e-26
 Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 24/183 (13%)

Query: 53  PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESL-QSCGGQIIPPA 111
           P+      P     D +   +       L+     +     A   E + Q  GG  +   
Sbjct: 170 PENLFAPAP-QSRMDGEWDERDMVGFARLMA---AHRHEIAAVIIEPIVQGAGGMRMYHP 225

Query: 112 NYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-P 158
            +L+ + K             +  GFGR G   +A +     I PDI+ +GK +  G   
Sbjct: 226 EWLKRIRKICDREGILLIADEIATGFGRTGK-LFACEHAE--IAPDILCLGKALTGGTMT 282

Query: 159 VAAVITTKEIAKSFQETGVEYF---NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQ 215
           ++A +TT+E+A++        F    T+ GNP++CA ANA + +LE+ + ++   D+  Q
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342

Query: 216 LHT 218
           L  
Sbjct: 343 LRE 345

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457

 Score = 99.6 bits (249), Expect = 1e-24
 Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 28/182 (15%)

Query: 53  PDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESL-QSCGGQIIPPA 111
                       Y                   + ++     A   E + Q  GG      
Sbjct: 203 AAQVFAPQVPRDYDPAYS--------AAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDP 254

Query: 112 NYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-P 158
            YL ++     ++        +  GFGR G   +A    G  + PDI+ VGK +  G+  
Sbjct: 255 RYLHDLRDICRRYEVLLIFDEIATGFGRTGA-LFAADHAG--VSPDIMCVGKALTGGYLS 311

Query: 159 VAAVITTKEIAKSFQETGVEYF---NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQ 215
           +AA + T ++A +             T+  NP++CAV+ A +E+L  ++ R    ++   
Sbjct: 312 LAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAG 371

Query: 216 LH 217
           L 
Sbjct: 372 LT 373

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score = 95.0 bits (236), Expect = 1e-22
 Identities = 36/217 (16%), Positives = 66/217 (30%), Gaps = 27/217 (12%)

Query: 30  PATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPD----EDLGVKYAQDVQDLIE-- 83
           P T    +      +  S     P+        + +        L   Y+  +   ++  
Sbjct: 527 PPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEH 586

Query: 84  AMGRNGKRPCAFFAESL-QSCGGQIIPPANYLREVY----KH--------VQVGFGRVGT 130
           +  R      A   E +    GG  +    + R +               V  GF R+G 
Sbjct: 587 SGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV 646

Query: 131 HWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETG-VEYF---NTYGG 185
                +L G    PDI    K +  G  P+A  + T  +  SF     ++     ++Y  
Sbjct: 647 -ETTTELLG--CKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSA 703

Query: 186 NPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE 222
           + + CA A   ++  +      +    G  L     E
Sbjct: 704 HAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDE 740

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 21/157 (13%)

Query: 77  DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREV----YKH--------VQVG 124
           D++ + E    +G    AF AE + S  G      ++LRE      ++        V  G
Sbjct: 187 DIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISG 246

Query: 125 FGRVGTHWWAFQLQG-DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYF--- 180
           F RVG H      Q   D+ PD+  + K    G P   +   +++               
Sbjct: 247 F-RVGNHGM----QALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQ 301

Query: 181 NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
            T+ GNP++ A A A ++ +  +++     D+G    
Sbjct: 302 GTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAR 338

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 124 GFGRVGTHWWAFQLQG-DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEY-FN 181
           GF R+G        QG  +I  DI+ +GK +G G PV AV  ++E+       G  +   
Sbjct: 248 GF-RLGLEGA----QGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAG 302

Query: 182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
           T+  +P++ A   A ++ LE E +   + +    L 
Sbjct: 303 TFNAHPITMAAGLATLKALEEEPVYSVSREAAKALE 338

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	100.0
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	100.0
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	100.0
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.98
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.98
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.97
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.96
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.96
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.96
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.96
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.96
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.95
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.95
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.92
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.92
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.92
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.91
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.86
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.91
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.91
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.91
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.9
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.9
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.9
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.89
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.89
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.89
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.89
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.87
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.87
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.87
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.86
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.85
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.8
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.79
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.77
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.7
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.67
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.63
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.45
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.41
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.28
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.24
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.18
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.1
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.08
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.04
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.01
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	98.98
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	98.96
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	98.92
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	98.91
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	98.89
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	98.89
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	98.89
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	98.88
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	98.88
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	98.87
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	98.87
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	98.86
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	98.86
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	98.85
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	98.84
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	98.84
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	98.81
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	98.8
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	98.8
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	98.79
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	98.77
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	98.76
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	98.76
3nra_A	407	Aspartate aminotransferase; structural genomics, j	98.75
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	98.73
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	98.73
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	98.71
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	98.71
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	98.7
1vp4_A	425	Aminotransferase, putative; structural genomics, j	98.7
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	98.69
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	98.69
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	98.67
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	98.67
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	98.66
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	98.64
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	98.64
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	98.62
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	98.62
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	98.61
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	98.6
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	98.6
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	98.58
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	98.58
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	98.58
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	98.55
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	98.54
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	97.94
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	98.53
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	98.52
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	98.5
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	98.49
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	98.49
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	98.48
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	98.47
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	98.47
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	98.46
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	98.46
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	98.45
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	98.45
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	98.44
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	98.44
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	98.42
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	98.42
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	98.42
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	98.39
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	98.38
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	98.33
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	98.31
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	98.3
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	98.29
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	98.29
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	98.27
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	98.25
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	98.24
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	98.22
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	98.21
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	98.19
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	98.18
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	98.17
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	98.16
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	98.15
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	98.14
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	98.13
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	98.11
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	98.11
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	98.1
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	98.1
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	98.09
3rq1_A	418	Aminotransferase class I and II; structural genomi	98.08
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	98.08
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	98.07
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	98.07
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	98.06
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	98.05
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	98.04
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	97.99
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	97.99
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	97.98
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	97.98
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	97.97
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	97.97
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	97.96
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	97.95
3ele_A	398	Amino transferase; RER070207001803, structural gen	97.92
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	97.91
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	97.87
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	97.82
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	97.8
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	97.79
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	97.79
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	97.78
1svv_A	359	Threonine aldolase; structural genomics, structura	97.78
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	97.75
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	97.74
1iug_A	352	Putative aspartate aminotransferase; wild type, py	97.73
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	97.73
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	97.7
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	97.69
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	97.69
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	97.67
3pj0_A	359	LMO0305 protein; structural genomics, joint center	97.67
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	97.67
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	97.67
1o69_A	394	Aminotransferase; structural genomics, unknown fun	97.65
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	97.65
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	97.59
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	97.58
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	97.54
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	97.51
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	97.51
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	97.49
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	97.43
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	97.41
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	97.35
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	97.34
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	97.32
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	97.32
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	97.31
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	97.28
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	97.2
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	97.15
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	97.13
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	97.05
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	97.04
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	96.99
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	96.96
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	96.93
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	96.89
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	96.85
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	96.84
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	96.8
2fnu_A	375	Aminotransferase; protein-product complex, structu	96.78
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	96.53
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	96.52
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	96.39
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	96.11
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	96.01
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	95.69
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	95.69
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	95.69
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	95.65
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	95.5
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	95.39
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	95.1
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	94.69
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	94.6
3hmu_A	472	Aminotransferase, class III; structural genomics,	94.43
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	94.25
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	94.07
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	94.03
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	93.85
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	93.18
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	92.97
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	92.88
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	92.61
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	91.63
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	91.41
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	91.34
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	91.14
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	90.85
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	89.87
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	89.8
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	89.76
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	88.95
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	86.99
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	86.88
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	86.41
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	85.93
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	85.65
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	84.47
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	81.3

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=100.00  E-value=3.8e-42  Score=308.57  Aligned_cols=178  Identities=25%  Similarity=0.454  Sum_probs=155.0

Q ss_pred             hccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHH
Q psy6205          39 ITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVY  118 (224)
Q Consensus        39 ~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~  118 (224)
                      .+.+...+..++++|++|++......  .+++...+++++++.+..  .++++|||||+|||||++|+++||++||++||
T Consensus       188 ~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~l~~~i~~--~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr  263 (473)
T 4e3q_A          188 VFGLPLPGFVHLTCPHYWRYGEEGET--EEQFVARLARELEETIQR--EGADTIAGFFAEPVMGAGGVIPPAKGYFQAIL  263 (473)
T ss_dssp             GGTCSCTTEEEECCCCHHHHSCTTCC--HHHHHHHHHHHHHHHHHH--HCGGGEEEEEECSSBSTTTSBCCCTTHHHHHH
T ss_pred             ccCCCCCcccccCCCcccccccccch--hhHHHHHHHHHHHHHHHh--hCCCceEEEEeCCccCCCCceeCCHHHHHHHH
Confidence            34455566777888888876543322  245667778888888875  36789999999999999999999999999999


Q ss_pred             HH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcC-----Ccccc
Q psy6205         119 KH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET-----GVEYF  180 (224)
Q Consensus       119 ~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~-----~~~~~  180 (224)
                      ++            |||||||||+ ||++|++|  |+|||+|+||+|||| +|+||+++++++++.+...     ...|+
T Consensus       264 ~lc~~~gilLI~DEV~tGfGRtG~-~fa~e~~g--v~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg  340 (473)
T 4e3q_A          264 PILRKYDIPVISDEVICGFGRTGN-TWGCVTYD--FTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHG  340 (473)
T ss_dssp             HHHHHTTCCEEEECTTTSSSTTSS-SCHHHHTT--CCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHhcccceEEeccCccccCCcccc-hhHHHhcC--CCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccC
Confidence            99            9999999997 89999998  999999999999999 8999999999999988542     24688


Q ss_pred             cCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         181 NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       181 ~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +||+|||++||||+++|++|++++++++++++|++|+++|+++
T Consensus       341 ~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l  383 (473)
T 4e3q_A          341 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHI  383 (473)
T ss_dssp             CTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999875

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=100.00  E-value=1.7e-41  Score=303.12  Aligned_cols=170  Identities=26%  Similarity=0.486  Sum_probs=140.8

Q ss_pred             CCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-
Q psy6205          42 PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-  120 (224)
Q Consensus        42 ~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-  120 (224)
                      +...++.++|.|+.|+.......  ..++...+++.++   +.  .++++|||||+|||||++|+++|+++||++||++ 
T Consensus       184 p~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~e---~~--~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc  256 (456)
T 4atq_A          184 PFAPEVYRMPMSYPFREENPEIT--GAEAAKRAITMIE---KQ--IGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWA  256 (456)
T ss_dssp             SCCSSEEEECCCCGGGCSSTTCC--HHHHHHHHHHHHH---HH--TCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred             CccccceecccccccccCCCccc--HHHHHHHHHHHHH---Hh--hcCCceEEEEeccccCCCCccccchhhhHHHHHHH
Confidence            33445566666666654432211  1222223333333   22  2567999999999999999999999999999999 


Q ss_pred             -----------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHH
Q psy6205         121 -----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVS  189 (224)
Q Consensus       121 -----------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~  189 (224)
                                 |||||||||+ ||++|++|  |+|||+|+||++|||+|+||+++++++++.+...  .|++||+|||++
T Consensus       257 ~~~gillI~DEV~tG~GRtG~-~~a~e~~g--v~PDivt~gK~lggg~P~~av~~~~~i~~~~~~~--~~~~Tf~gnpla  331 (456)
T 4atq_A          257 KEKGIVFIADEVQSGFCRTGE-WFAVDHEG--VVPDIITMAKGIAGGLPLSAITGRADLLDAVHPG--GLGGTYGGNPVA  331 (456)
T ss_dssp             HHHTCEEEEECTTTTTTTTSS-SSGGGGTT--CCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTT--SSCCSSSSCHHH
T ss_pred             hhcCCceEecccccccCCccc-cccccccC--CCCchhhhhhcccCcCCceeeEecHHHHhccccc--CCCCCCCCChHH
Confidence                       9999999997 89999998  9999999999999999999999999999998654  688999999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         190 CAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       190 ~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ||||+++|++|+++++.++++++|++|+++|+++
T Consensus       332 ~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l  365 (456)
T 4atq_A          332 CAAALAAIDTMEQHDLNGRARHIEELALGKLREL  365 (456)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999864

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=100.00  E-value=8.5e-37  Score=272.29  Aligned_cols=197  Identities=20%  Similarity=0.195  Sum_probs=151.7

Q ss_pred             EEEEeecCCCCCCccccchhhhccCCCcceeecCCCccccCCCCCC-------CCCCh--hHHHHHHHHHHHHHHHHccC
Q psy6205          18 GVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPAD-------KYPDE--DLGVKYAQDVQDLIEAMGRN   88 (224)
Q Consensus        18 gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~-------~~~~~--~~~~~~~~~l~~~~~~~~~~   88 (224)
                      ++|.+.+..++++++..+.++...- ..+...+.+-++||+.....       ..+.+  ......++.++++++   ++
T Consensus       142 ~~~~v~f~~SGsEA~e~AiklAr~~-tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~~~l~~~l~---~~  217 (454)
T 4ao9_A          142 QIEQLRFTNSGTEANLMALTAALHF-TGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDAQTARAQIE---RH  217 (454)
T ss_dssp             TCSEEEEESSHHHHHHHHHHHHHHH-HTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCHHHHHHHHH---HT
T ss_pred             CCCEEEEeCchHHHHHHHHHHHHhc-ccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCchHHHHHHHHh---hc
Confidence            3455556666766666665554332 22333344455666643210       00000  000012455666665   36


Q ss_pred             CCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC
Q psy6205          89 GKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG  156 (224)
Q Consensus        89 ~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G  156 (224)
                      +++|||||+|||||++|+++|+++||+.||++            |||  ||||+ +|+++++|  |+|||+|+||+||||
T Consensus       218 ~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t--GR~G~-~~a~e~~g--v~PDi~t~gK~lggG  292 (454)
T 4ao9_A          218 GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT--SRLAP-HGLANKLG--IRSDLTTLGKYIGGG  292 (454)
T ss_dssp             GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG--GGGST-TCHHHHHT--CCCSEEEEEGGGGTT
T ss_pred             CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc--CCCcc-ccchhccC--CCCcEEEeccccCCC
Confidence            77899999999999999999999999999999            999  59997 89999998  999999999999999


Q ss_pred             cccccceecHHHHHhhhcC--CcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         157 HPVAAVITTKEIAKSFQET--GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~--~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|+||+++++++++.+.+.  ...|++||+|||++|||++++|++|++++++++++++|++|+++|+++
T Consensus       293 ~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l  361 (454)
T 4ao9_A          293 MSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNAL  361 (454)
T ss_dssp             SSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence            9999999999999998653  235779999999999999999999999999999999999999999874

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.98  E-value=5.9e-34  Score=270.25  Aligned_cols=146  Identities=21%  Similarity=0.348  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHc--cCCCCceEEEEccc-cCCCCcccCCHHHHHHHHHH------------HHhCCccccccchh
Q psy6205          70 LGVKYAQDVQDLIEAMG--RNGKRPCAFFAESL-QSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWA  134 (224)
Q Consensus        70 ~~~~~~~~l~~~~~~~~--~~~~~iaavi~Epv-~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~  134 (224)
                      +.+.|+++|++.++...  .+++++||||+||| ||++|++++|++|+++|+++            |+|||||||+ +|+
T Consensus       571 ~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~-~fa  649 (831)
T 4a0g_A          571 LARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV-ETT  649 (831)
T ss_dssp             HHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB-SST
T ss_pred             hhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC-chh
Confidence            45567788888776421  35689999999997 99999999999999999999            9999999997 889


Q ss_pred             hhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcCC----cccccCCCCcHHHHHHHHHHHHHHhhhhHHHHH
Q psy6205         135 FQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETG----VEYFNTYGGNPVSCAVANAVMEVLETENLREHA  209 (224)
Q Consensus       135 ~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~----~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~  209 (224)
                      ++++|  ++|||+|+||+|||| +|+|++++++++++.+....    ..|++||+|||++||+++++|++|+++++.+++
T Consensus       650 ~e~~g--v~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~  727 (831)
T 4a0g_A          650 TELLG--CKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNI  727 (831)
T ss_dssp             HHHHS--SCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTB
T ss_pred             hHhcC--CCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99998  999999999999999 69999999999999987542    247899999999999999999999988999998


Q ss_pred             HHHHHHHHH
Q psy6205         210 LDVGNQLHT  218 (224)
Q Consensus       210 ~~~g~~l~~  218 (224)
                      +++++++++
T Consensus       728 ~~~~~~l~~  736 (831)
T 4a0g_A          728 TSQGKTLRE  736 (831)
T ss_dssp             CTTSSBBCC
T ss_pred             HHHHHHHHH
Confidence            777776543

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.98  E-value=6.3e-32  Score=242.57  Aligned_cols=175  Identities=26%  Similarity=0.441  Sum_probs=151.6

Q ss_pred             ccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHH
Q psy6205          40 TRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK  119 (224)
Q Consensus        40 ~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~  119 (224)
                      +.+...+..+++.|+.|++ ++.+.   +++...++++|+++++..  +++++++||+||+++++|+++++++||++|++
T Consensus       176 ~~~~~~~~~~~~~p~~~~~-~~~~~---~~~~~~~~~~le~~i~~~--~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~  249 (476)
T 3i5t_A          176 FDIAQDRISFLSSPNPRHA-GNRSQ---EAFLDDLVQEFEDRIESL--GPDTIAAFLAEPILASGGVIIPPAGYHARFKA  249 (476)
T ss_dssp             SCCCCTTEEEECCCCGGGC-TTSCH---HHHHHHHHHHHHHHHHHH--CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred             cCCCCCCcEEeCCCccccc-CCCch---HHHHHHHHHHHHHHHHhc--CCCCEEEEEECCccCCCCcccCCHHHHHHHHH
Confidence            3444456677888888887 44332   566677789999888753  44789999999999999999999999999999


Q ss_pred             H------------HHhCCccccccchhhh-hcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcCC-----cccc
Q psy6205         120 H------------VQVGFGRVGTHWWAFQ-LQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETG-----VEYF  180 (224)
Q Consensus       120 ~------------v~tG~GrtG~~~~~~~-~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~-----~~~~  180 (224)
                      +            |+|||||+|+ +|+++ +++  +.|||+|+||++||| +|+|++++++++++.+....     ..+.
T Consensus       250 lc~~~gillI~DEv~~g~gr~G~-~~~~~~~~~--v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~  326 (476)
T 3i5t_A          250 ICEKHDILYISDEVVTGFGRCGE-WFASEKVFG--VVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNG  326 (476)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSS-SCHHHHTTC--CCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCC
T ss_pred             HHHHcCCEEEEEecccCCccccC-ceeeecccC--CCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCccccccccc
Confidence            9            9999999997 78999 998  999999999999999 89999999999999986521     2466


Q ss_pred             cCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         181 NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       181 ~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +||++||++|+|++++|++++++++.+++++++++++++|+++
T Consensus       327 ~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l  369 (476)
T 3i5t_A          327 YTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASL  369 (476)
T ss_dssp             CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999998999999999999999999865

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.97  E-value=1.5e-31  Score=239.89  Aligned_cols=173  Identities=29%  Similarity=0.494  Sum_probs=147.1

Q ss_pred             CCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--
Q psy6205          43 PVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--  120 (224)
Q Consensus        43 ~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--  120 (224)
                      ...++.+++.|++|+.....+   .+++...++++|+++++..  .++++++||+||+++++|+++++++|+++|+++  
T Consensus       180 ~~~~~~~v~~p~~~~~~~~~~---~~~~~~~~~~~le~~i~~~--~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~  254 (472)
T 3hmu_A          180 LIPDVHHINQPNWWAEGGDMD---PEEFGLARARELEEAILEL--GENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICD  254 (472)
T ss_dssp             CCSSEEEECCCCHHHHCTTCC---HHHHHHHHHHHHHHHHHHH--CGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHH
T ss_pred             CCCCcEEeCCCccccCCcccC---HHHHHHHHHHHHHHHHHhc--CCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHH
Confidence            334566777777776321121   2556667788898888753  457899999999999999999999999999999  


Q ss_pred             ----------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcCCcccccCCCCcHHH
Q psy6205         121 ----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVS  189 (224)
Q Consensus       121 ----------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~  189 (224)
                                |+|||||+|+ +|++++++  +.|||+||||+|||| +|+|++++++++++.+......+.+||++||++
T Consensus       255 ~~gillI~DEv~~gfgr~G~-~~a~~~~~--v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a  331 (472)
T 3hmu_A          255 KYDILLIADEVICGFGRTGN-WFGTQTMG--IRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVA  331 (472)
T ss_dssp             HTTCEEEEECTTTTTTTTSS-SCHHHHHT--CCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHH
T ss_pred             HcCCEEEEEccccCCcccCc-cchhHHhC--CCCceeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHH
Confidence                      9999999997 88999998  999999999999998 799999999999999943333567899999999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHH-HHHHHHHHhhhhc
Q psy6205         190 CAVANAVMEVLETENLREHAL-DVGNQLHTPKKEN  223 (224)
Q Consensus       190 ~aaa~a~l~~~~~~~l~~~~~-~~g~~l~~~l~~l  223 (224)
                      |+|++++|++++++++.++++ +++++++++|+++
T Consensus       332 ~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l  366 (472)
T 3hmu_A          332 AAVALENLRILEEENILDHVRNVAAPYLKEKWEAL  366 (472)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999899999999 9999999999765

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.96  E-value=9.7e-29  Score=220.43  Aligned_cols=176  Identities=23%  Similarity=0.397  Sum_probs=148.5

Q ss_pred             ccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHH
Q psy6205          40 TRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK  119 (224)
Q Consensus        40 ~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~  119 (224)
                      +.+...+..+++.|.+|++.....  +.+++...++++|++.+...  +++++++||+||+++++|+++++++|+++|++
T Consensus       174 ~~~~~~~~~~~~~p~~~~~~~~g~--~~~~~~~~~~~~le~~i~~~--~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~  249 (460)
T 3gju_A          174 FDLPRAPVLHTEAPYYFRRTDRSM--SEEQFSQHCADKLEEMILAE--GPETIAAFIGEPILGTGGIVPPPAGYWEKIQA  249 (460)
T ss_dssp             TTCSCTTEEEECCCCGGGCSCTTC--CHHHHHHHHHHHHHHHHHHH--CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHH
T ss_pred             cCCCCCCCEEeCCCccccCCcccc--ChhHHHHHHHHHHHHHHHhc--CCCCEEEEEECCccCCCCCccCCHHHHHHHHH
Confidence            344445667778888887653211  12455667788898888642  45789999999999999999999999999999


Q ss_pred             H------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhc-----CCccccc
Q psy6205         120 H------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQE-----TGVEYFN  181 (224)
Q Consensus       120 ~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~-----~~~~~~~  181 (224)
                      +            |++||||+|+ +|++++++  +.||++|+||+|||| +|+|++++++++++.+..     ....+.+
T Consensus       250 l~~~~~~llI~DEv~~g~gr~g~-~~~~~~~~--~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~  326 (460)
T 3gju_A          250 VLKKYDVLLVADEVVTGFGRLGT-MFGSDHYG--IKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGW  326 (460)
T ss_dssp             HHHHTTCEEEEECTTTTTTTTSS-SCHHHHHT--CCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCC
T ss_pred             HHHHcCCEEEEeccccCCCcccc-cchHhhcC--CCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCC
Confidence            9            9999999997 78999998  999999999999999 699999999999999852     2235678


Q ss_pred             CCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         182 TYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       182 T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ||++||++|++++++|++++++++.+++++++++++++|++
T Consensus       327 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~  367 (460)
T 3gju_A          327 TYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAK  367 (460)
T ss_dssp             TTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998899999999999999999854

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.96  E-value=1.4e-28  Score=218.58  Aligned_cols=174  Identities=29%  Similarity=0.492  Sum_probs=150.3

Q ss_pred             cCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccc-cCCCCcccCCHHHHHHHHH
Q psy6205          41 RPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESL-QSCGGQIIPPANYLREVYK  119 (224)
Q Consensus        41 ~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv-~~~~G~~~~~~~~l~~~~~  119 (224)
                      .+...+..+++.|++|+++++.+.   +++...++++|++.++.  .+++++++||+||+ ++ +|++.|+++|+++|++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~le~~l~~--~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~  243 (452)
T 3n5m_A          170 EPFASGFLHVTPPDCYRMPGIERE---NIYDVECVKEVDRVMTW--ELSETIAAFIMEPIITG-GGILMAPQDYMKAVHE  243 (452)
T ss_dssp             CCCCSCEEEECCCCTTTSTTTTTS---CGGGCHHHHHHHHHHHH--HCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHH
T ss_pred             CCCCCCCeEeCCCccccCccCCch---hhHHHHHHHHHHHHHHh--cCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHH
Confidence            444456777888999998876543   45555678888888863  25578999999999 89 9999999999999999


Q ss_pred             H------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhc----CCcccccC
Q psy6205         120 H------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQE----TGVEYFNT  182 (224)
Q Consensus       120 ~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~----~~~~~~~T  182 (224)
                      +            |++||||+|+ +|++++++  +.||++|+||++++| +|+|++++++++++.+..    ....+.+|
T Consensus       244 l~~~~~~llI~DEv~~g~g~~g~-~~~~~~~~--~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t  320 (452)
T 3n5m_A          244 TCQKHGALLISDEVICGFGRTGK-AFGFMNYD--VKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINT  320 (452)
T ss_dssp             HHHHHTCEEEEECTTTTTTTTSS-SSGGGGTT--CCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCS
T ss_pred             HHHHcCCEEEEecchhCCCcccc-cchhhhcC--CCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCC
Confidence            9            9999999997 78999998  999999999999999 899999999999999854    22346789


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         183 YGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       183 ~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |++||++|++++++|+.++++++.+++++++++++++|+++
T Consensus       321 ~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~  361 (452)
T 3n5m_A          321 FGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEE  361 (452)
T ss_dssp             STTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998999999999999999999764

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.96  E-value=1.2e-28  Score=219.70  Aligned_cols=167  Identities=28%  Similarity=0.462  Sum_probs=139.9

Q ss_pred             CcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH---
Q psy6205          44 VRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH---  120 (224)
Q Consensus        44 ~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~---  120 (224)
                      ..++.+++.|++|+.+++.+.   ++..+.+++.|++.+     .++++++||+||+++++|+++++++|+++|+++   
T Consensus       186 ~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~l~~~i-----~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~  257 (453)
T 4ffc_A          186 APEVYRMPASYPLRDEPGLTG---EEAARRAISRIETQI-----GAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASE  257 (453)
T ss_dssp             CSSEEEECCCCTTTSCTTCCH---HHHHHHHHHHHHHHT-----CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred             CCCcEEeCCCccccCccccch---HHHHHHHHHHHHHhc-----CCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence            345566677776766544321   333334444444333     346899999999999999999999999999998   


Q ss_pred             ---------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHH
Q psy6205         121 ---------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCA  191 (224)
Q Consensus       121 ---------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~a  191 (224)
                               |++||||+|+ +|++++++  +.||++||||++++|+|+|++++++++++.+...  .+.+||++||++|+
T Consensus       258 ~~~llI~DEv~~g~g~~g~-~~a~~~~~--~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~~~--~~~~t~~~~~~~~a  332 (453)
T 4ffc_A          258 NGVVFIADEVQTGFARTGA-WFASEHEG--IVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAG--GLGGTYGGNPVTCA  332 (453)
T ss_dssp             HTCEEEEECTTTTTTTTSS-SSTHHHHT--CCCSEEEECGGGGTTSSCEEEEEEHHHHTTSCTT--SSCCSSSSCHHHHH
T ss_pred             cCCEEEEecCccCCCcccc-cchhhhcC--CCcchHhhhhhhcCCcCeEEEEECHHHHhhhccc--CcCCCCCcCHHHHH
Confidence                     9999999997 88999998  9999999999999999999999999999988654  57799999999999


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         192 VANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       192 aa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++++|+.++++++.+++++++++++++|+++
T Consensus       333 aa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~  364 (453)
T 4ffc_A          333 AAVAALGVMRELDLPARARAIEASVTSRLSAL  364 (453)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999988899999999999999999764

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.96  E-value=1.8e-28  Score=218.43  Aligned_cols=169  Identities=28%  Similarity=0.420  Sum_probs=139.8

Q ss_pred             ceeecCCCccccCCC-CCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH----
Q psy6205          46 MSTEAPCPDVYRGKY-PADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH----  120 (224)
Q Consensus        46 ~~~~vp~P~~yr~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----  120 (224)
                      ++.+++.|+.|+.++ +.+.   +.+...+++.+++.++... .++++++||+||+++++|++.++++|+++|+++    
T Consensus       185 ~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~l~~~~-~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~  260 (451)
T 3oks_A          185 EIYRAPLSYPFRDAEFGKEL---ATDGELAAKRAITVIDKQI-GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKN  260 (451)
T ss_dssp             SEEEECCCCHHHHGGGCTTT---TTCHHHHHHHHHHHHHHHT-CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT
T ss_pred             CcEEeCCCcccccccccccc---chhhHHHHHHHHHHHHhhc-CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHc
Confidence            445556665555432 1111   2233445666655555321 457899999999999999999999999999999    


Q ss_pred             --------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHH
Q psy6205         121 --------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAV  192 (224)
Q Consensus       121 --------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aa  192 (224)
                              |++||||+|+ +|++++++  +.||++||||++++|+|+|++++++++++.+...  .+.+||++||++|++
T Consensus       261 g~~lI~DEv~~g~g~~g~-~~~~~~~~--~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~~~--~~~~t~~~~~~~~aa  335 (451)
T 3oks_A          261 DVVFIADEVQTGFARTGA-MFACEHEG--IDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVS--GLGGTYGGNPIACAA  335 (451)
T ss_dssp             TCEEEEECTTTTTTTTSS-SSGGGGGT--CCCSEEEECGGGGTTSSCEEEEEEHHHHTCSCTT--SBCCSSSSCHHHHHH
T ss_pred             CCEEEEEecccCCCcccc-chhhhhcC--CCCCeeeehhhhhCCcceEEEEECHHHHhhhcCC--CcCCCCCCCHHHHHH
Confidence                    9999999997 78999998  9999999999999999999999999999988654  578999999999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         193 ANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       193 a~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++++|+.++++++.+++++++++++++|+++
T Consensus       336 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~  366 (451)
T 3oks_A          336 ALATIETIESEGLVARAQQIEKIMKDRLGRL  366 (451)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999988899999999999999999764

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.96  E-value=1.2e-28  Score=219.82  Aligned_cols=175  Identities=29%  Similarity=0.487  Sum_probs=145.6

Q ss_pred             cCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH
Q psy6205          41 RPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH  120 (224)
Q Consensus        41 ~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~  120 (224)
                      .+...+..+++.|++|+.....+   .+.+...++++|++.+...  +++++++||+||+++++|++.++++|+++++++
T Consensus       174 ~~~~~~~~~~~~p~~~~~~~~~d---~~~~~~~~~~~le~~i~~~--~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l  248 (459)
T 4a6r_A          174 DLPIPGMAHIEQPWWYKHGKDMT---PDEFGVVAARWLEEKILEI--GADKVAAFVGEPIQGAGGVIVPPATYWPEIERI  248 (459)
T ss_dssp             CCSCSSEEEECCCCHHHHCTTCC---HHHHHHHHHHHHHHHHHHH--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHH
T ss_pred             CCCCCCCEEeCCCccccCCcccC---HHHHHHHHHHHHHHHHHHc--CCCCEEEEEECCccCCCCcccCCHHHHHHHHHH
Confidence            33344566677777676321122   2455566788888888643  457899999999999999999999999999999


Q ss_pred             ------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcC-CcccccCCCCc
Q psy6205         121 ------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET-GVEYFNTYGGN  186 (224)
Q Consensus       121 ------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~-~~~~~~T~~~~  186 (224)
                                  |++||||+|+ +|++++++  +.||++||||+|+|| +|+|++++++++++.+... ...+.+||++|
T Consensus       249 ~~~~~~llI~DEv~~g~gr~G~-~~~~~~~~--~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~  325 (459)
T 4a6r_A          249 CRKYDVLLVADEVICGFGRTGE-WFGHQHFG--FQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGH  325 (459)
T ss_dssp             HHHTTCEEEEECTTTTTTTTSS-SSHHHHHT--CCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSC
T ss_pred             HHHcCCEEEEeccccCCCcccc-cchHhhcC--CCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCC
Confidence                        9999999997 78999998  999999999999998 7999999999999998632 22567899999


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHhh-hhc
Q psy6205         187 PVSCAVANAVMEVLETENLREHAL-DVGNQLHTPK-KEN  223 (224)
Q Consensus       187 p~~~aaa~a~l~~~~~~~l~~~~~-~~g~~l~~~l-~~l  223 (224)
                      |++|++++++|++++++++.++++ +++++++++| +.+
T Consensus       326 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l  364 (459)
T 4a6r_A          326 PVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETF  364 (459)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998899999999 9999999998 543

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.95  E-value=4.8e-28  Score=215.13  Aligned_cols=171  Identities=30%  Similarity=0.513  Sum_probs=143.2

Q ss_pred             CCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEcccc-CCCCcccCCHHHHHHHHHH
Q psy6205          42 PPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQ-SCGGQIIPPANYLREVYKH  120 (224)
Q Consensus        42 ~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~-~~~G~~~~~~~~l~~~~~~  120 (224)
                      +...+..+++.|++||++ +...   +.+...++++|++.++.   +++++++||+||++ +++|++.++++|+++++++
T Consensus       168 ~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~d~~~le~~l~~---~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l  240 (448)
T 3dod_A          168 PLMFESYKAPIPYVYRSE-SGDP---DECRDQCLRELAQLLEE---HHEEIAALSIESMVQGASGMIVMPEGYLAGVREL  240 (448)
T ss_dssp             -----CEEECCCCCTTSS-SCCH---HHHHHHHHHHHHHHHHH---HGGGEEEEEEESSEESTTTCEECCTTHHHHHHHH
T ss_pred             CCCCCceEeCCCccccCC-ccch---hhhhHHHHHHHHHHHHh---CCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHH
Confidence            334456778888888876 3221   34444567777777762   45789999999998 9999999999999999999


Q ss_pred             ------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhc-----CCcccccC
Q psy6205         121 ------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQE-----TGVEYFNT  182 (224)
Q Consensus       121 ------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~-----~~~~~~~T  182 (224)
                                  |++||||+|+ +|++++++  +.||++|+||++++| +|+|++++++++++.+..     ....+.+|
T Consensus       241 ~~~~~~~lI~DEv~~g~g~~g~-~~a~~~~~--~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t  317 (448)
T 3dod_A          241 CTTYDVLMIVDEVATGFGRTGK-MFACEHEN--VQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHS  317 (448)
T ss_dssp             HHHTTCEEEEECTTTTTTTTSS-SSGGGGGT--CCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCT
T ss_pred             HHHhCCEEEEeccccCCCcccc-hhhhhhcC--CCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCC
Confidence                        9999999997 78999998  999999999999999 599999999999999864     11356789


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         183 YGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       183 ~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      |++||++|++++++|+.++++++.+++++++++++++|++
T Consensus       318 ~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~  357 (448)
T 3dod_A          318 YTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD  357 (448)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998899999999999999999875

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.95  E-value=5.5e-28  Score=215.89  Aligned_cols=144  Identities=26%  Similarity=0.454  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHccCCCCceEEEEcc-ccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCC
Q psy6205          74 YAQDVQDLIEAMGRNGKRPCAFFAES-LQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGD  140 (224)
Q Consensus        74 ~~~~l~~~~~~~~~~~~~iaavi~Ep-v~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~  140 (224)
                      .+++|++.++.   +++++++||+|| +|+++|++.++++|+++++++            |++||||+|+ +|++++++ 
T Consensus       219 d~~~le~~l~~---~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~-~~a~~~~~-  293 (457)
T 3tfu_A          219 YSAAFEAQLAQ---HAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA-LFAADHAG-  293 (457)
T ss_dssp             HHHHHHHHHHH---HGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHT-
T ss_pred             HHHHHHHHHHh---CCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc-hhHhHhcC-
Confidence            46677777654   456899999999 999999999999999999998            9999999997 88999998 


Q ss_pred             CCCCchhcccccccCC-cccccceecHHHHHhhhc---CCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy6205         141 DIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQE---TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL  216 (224)
Q Consensus       141 ~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~---~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l  216 (224)
                       +.||++||||+|+|| +|+|++++++++++.+..   ....+++||++||++|++++++|++++++++.++++++++++
T Consensus       294 -~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l  372 (457)
T 3tfu_A          294 -VSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGL  372 (457)
T ss_dssp             -CCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             -CCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence             999999999999999 599999999999999852   223567999999999999999999999899999999999999


Q ss_pred             HHhhhhc
Q psy6205         217 HTPKKEN  223 (224)
Q Consensus       217 ~~~l~~l  223 (224)
                      +++|+++
T Consensus       373 ~~~L~~l  379 (457)
T 3tfu_A          373 TAGLDTA  379 (457)
T ss_dssp             HHHHGGG
T ss_pred             HHHHHHH
Confidence            9999875

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.92  E-value=1.9e-24  Score=190.58  Aligned_cols=170  Identities=30%  Similarity=0.472  Sum_probs=139.2

Q ss_pred             ceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-----
Q psy6205          46 MSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-----  120 (224)
Q Consensus        46 ~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----  120 (224)
                      +...++.|+.|+++++.+.   +++...++++|++.++..  +++++++|++||+++++|.+.++++|+++++++     
T Consensus       163 ~~~~v~~~~~~~~~~~~~~---~~~~~~d~~~le~~l~~~--~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~  237 (433)
T 1zod_A          163 GSFAIPAPFTYRPRFERNG---AYDYLAELDYAFDLIDRQ--SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARG  237 (433)
T ss_dssp             TEEEECCCCTTSCCCEETT---EECHHHHHHHHHHHHHHH--CCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHT
T ss_pred             CceEecCCcccccccCCch---hhhHHHHHHHHHHHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC
Confidence            4445555655555443211   223344577888777642  336899999999999999999999999999998     


Q ss_pred             -------HHhCCccccccchhhhhcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHH
Q psy6205         121 -------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVA  193 (224)
Q Consensus       121 -------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa  193 (224)
                             |++||||+|. ++++++++  +.||++++||++++|+|+|++++++++++.+......+.+||++||++++++
T Consensus       238 ~~li~DEv~~~~g~~g~-~~~~~~~~--~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~  314 (433)
T 1zod_A          238 MLLILDEAQTGVGRTGT-MFACQRDG--VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVG  314 (433)
T ss_dssp             CEEEEECTTTTTTTTSS-SSTHHHHT--CCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHH
T ss_pred             CEEEEeccccCCCcCch-HhHHhhcC--CCCCEEEecccccCCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHH
Confidence                   9999999997 78889998  9999999999999999999999999999988754223448999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         194 NAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       194 ~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++|+.++++++.+++++++++|+++|+++
T Consensus       315 ~aal~~~~~~~~~~~~~~~~~~l~~~l~~l  344 (433)
T 1zod_A          315 LRVLDVVQRDGLVARANVMGDRLRRGLLDL  344 (433)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            999999988899999999999999999764

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.92  E-value=4.7e-24  Score=189.11  Aligned_cols=172  Identities=27%  Similarity=0.470  Sum_probs=140.7

Q ss_pred             cceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH----
Q psy6205          45 RMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH----  120 (224)
Q Consensus        45 ~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----  120 (224)
                      .+...++.|..|+..+...  +.+++...++++|++.++..  .++++++|++||+++++|++.++++|+++++++    
T Consensus       177 ~~~~~v~~~~~~~~~~~~~--d~~~~~~~~~~~le~~l~~~--~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~  252 (449)
T 3a8u_X          177 QDVDHLPHTLLASNAYSRG--MPKEGGIALADELLKLIELH--DASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQH  252 (449)
T ss_dssp             CSEEEECCCCCGGGTTCSS--SCSSSHHHHHHHHHHHHHHH--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH
T ss_pred             CCCeEecCCccccCccccC--ChHHHHHHHHHHHHHHHHhc--CCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHh
Confidence            3455666666565432110  11334456678888887642  235789999999999999999999999999998    


Q ss_pred             --------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccccceecHHHHHhhhcCCc-------ccccCCC
Q psy6205         121 --------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGV-------EYFNTYG  184 (224)
Q Consensus       121 --------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~~-------~~~~T~~  184 (224)
                              |++||||+|+ +|++++++  +.||++++||++++| +|+|++++++++++.+.....       .+.+||+
T Consensus       253 ~~~li~Dev~~~~g~~g~-~~~~~~~~--~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~  329 (449)
T 3a8u_X          253 NILLVFDEVITGFGRTGS-MFGADSFG--VTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYS  329 (449)
T ss_dssp             TCEEEEECTTTTTTTTSS-SSHHHHHT--CCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTT
T ss_pred             CCEEEEeccccCccccCc-chhhhhcC--CCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCc
Confidence                    9999999997 77889998  999999999999999 899999999999998865311       3568999


Q ss_pred             CcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         185 GNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       185 ~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +||+++++++++|+.++++++.+++++++++++++|+++
T Consensus       330 ~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l  368 (449)
T 3a8u_X          330 AHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGI  368 (449)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988899999999999999999764

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.92  E-value=1.5e-24  Score=192.06  Aligned_cols=129  Identities=33%  Similarity=0.607  Sum_probs=119.8

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-  156 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-  156 (224)
                      +++++||+||+++++|++.++++++++++++            |++||||+|+ +|++++++  +.||++|+||++++| 
T Consensus       211 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~-~~~~~~~~--~~~di~t~sK~l~~G~  287 (433)
T 1z7d_A          211 PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCVHHYN--VKPDVILLGKALSGGH  287 (433)
T ss_dssp             TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGT--CCCSEEEECGGGGTTS
T ss_pred             CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc-chhhHhcC--CCCCEEEECccccCCC
Confidence            5789999999999999999999999999999            9999999997 78889998  999999999999999 


Q ss_pred             cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|+|++++++++++.+...  .+.+||++||++|++++++|+.++++++.+++++++++|+++|+++
T Consensus       288 ~~~G~v~~~~~~~~~l~~~--~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l  352 (433)
T 1z7d_A          288 YPISAVLANDDIMLVIKPG--EHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRE  352 (433)
T ss_dssp             SCCEEEEECHHHHTTCCTT--CCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECHHHHhhhccc--cccccCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999887643  4678999999999999999999988899999999999999999864

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.91  E-value=2e-24  Score=191.78  Aligned_cols=129  Identities=38%  Similarity=0.627  Sum_probs=120.3

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-  156 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-  156 (224)
                      +++++||+||+++++|++.++++++++++++            |++||||+|+ +|++++++  +.||++++||++++| 
T Consensus       222 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~-~~~~~~~~--~~~Di~t~sK~l~~G~  298 (439)
T 2oat_A          222 PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR-WLAVDYEN--VRPDIVLLGKALSGGL  298 (439)
T ss_dssp             TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGT--CCCSEEEECGGGGTTS
T ss_pred             CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc-chhHHHhC--CCCcEEEecccccCCC
Confidence            4789999999999999999999999999999            9999999997 78889998  999999999999999 


Q ss_pred             cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|+|++++++++++.+...  .+.+||++||++|++++++|+.++++++.+++++++++|+++|+++
T Consensus       299 ~~~G~v~~~~~~~~~l~~~--~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l  363 (439)
T 2oat_A          299 YPVSAVLCDDDIMLTIKPG--EHGSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELMKL  363 (439)
T ss_dssp             SCCEEEEECHHHHTTSCTT--SSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTS
T ss_pred             CCeEEEEECHHHHhccCCC--CcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999888643  4678999999999999999999988899999999999999999875

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.86  E-value=1.6e-26  Score=206.93  Aligned_cols=142  Identities=19%  Similarity=0.297  Sum_probs=124.2

Q ss_pred             HHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCC
Q psy6205          77 DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        77 ~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~p  144 (224)
                      +++++.+.+.++++++++||+||+++++|++.++++|++.|+++            |++ | |+|. +|+++++|  +.|
T Consensus       219 d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g~-~~a~~~~g--v~p  293 (465)
T 2yky_A          219 DVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLSG-GGAQEMLG--ISA  293 (465)
Confidence            34433333323446899999999999999999999999999998            999 7 9997 78999998  999


Q ss_pred             chhcccccccCCcccccceecHHHHHhhhc---CCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         145 DIVTVGKPMGNGHPVAAVITTKEIAKSFQE---TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       145 Di~~~~K~l~~G~p~~av~~~~~i~~~~~~---~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      ||+||||++|+|+|+|++++++++++.+..   ....+.+||++||++|++++++|++++++++.+++++++++|+++|+
T Consensus       294 Di~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~  373 (465)
T 2yky_A          294 DLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLN  373 (465)
Confidence            999999999999999999999999998875   21246689999999999999999999989999999999999999998


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       374 ~~  375 (465)
T 2yky_A          374 RI  375 (465)
Confidence            65

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.91  E-value=4.8e-24  Score=187.92  Aligned_cols=146  Identities=27%  Similarity=0.436  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHHccCCCCceEEEEccccC-CCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhc-
Q psy6205          73 KYAQDVQDLIEAMGRNGKRPCAFFAESLQS-CGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQ-  138 (224)
Q Consensus        73 ~~~~~l~~~~~~~~~~~~~iaavi~Epv~~-~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~-  138 (224)
                      .++++|++.++..  +++++++|++||+++ ++|++.++++|+++++++            |++||||+|+ +++++++ 
T Consensus       174 ~~~~~le~~l~~~--~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~-~~~~~~~~  250 (430)
T 3i4j_A          174 EDAEGLRALLERE--GPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS-PLALSRWS  250 (430)
T ss_dssp             HHHTHHHHHHHHH--CGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTT
T ss_pred             HHHHHHHHHHHhc--CCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-hhhhhhhc
Confidence            4567788877643  346899999999999 999999999999999998            9999999997 7899999 


Q ss_pred             CCCCCCchhcccccccCC-cccccceecHHHHHhhhcCC--cccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy6205         139 GDDIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETG--VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQ  215 (224)
Q Consensus       139 g~~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~--~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~  215 (224)
                      +  +.||++|+||++++| +|+|++++++++++.+....  ..+.+||++||+++++++++|+.++++++.+++++++++
T Consensus       251 ~--~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~  328 (430)
T 3i4j_A          251 G--VTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQ  328 (430)
T ss_dssp             T--CCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             C--CCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            8  999999999999999 89999999999999987532  246689999999999999999999889999999999999


Q ss_pred             HHHhhhhc
Q psy6205         216 LHTPKKEN  223 (224)
Q Consensus       216 l~~~l~~l  223 (224)
                      ++++|+++
T Consensus       329 ~~~~l~~~  336 (430)
T 3i4j_A          329 LLAGLQAL  336 (430)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.91  E-value=2.4e-24  Score=190.10  Aligned_cols=142  Identities=29%  Similarity=0.402  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      +++|++.++.   +++++++||+||+++++|++.++++|+++|+++            |++|| |+|. ++++++++  +
T Consensus       189 ~~~le~~l~~---~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~-~~~~~~~~--~  261 (434)
T 3l44_A          189 VETLKEALDK---WGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY-GGAQDLLG--V  261 (434)
T ss_dssp             HHHHHHHHHH---HGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS-SCHHHHHT--C
T ss_pred             HHHHHHHHHh---CCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc-cHHHHHcC--C
Confidence            4566666653   346899999999999999999999999999999            99999 9997 78899998  9


Q ss_pred             CCchhcccccccCCcccccceecHHHHHhhhcCC-cccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG-VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~-~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      .||++|+||++++|+|+|++++++++++.+.... ..+.+||++||++|++++++|++++++++.+++++++++++++|+
T Consensus       262 ~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~  341 (434)
T 3l44_A          262 TPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGIL  341 (434)
T ss_dssp             CCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999886532 246689999999999999999999889999999999999999997


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       342 ~~  343 (434)
T 3l44_A          342 EQ  343 (434)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.91  E-value=6.3e-24  Score=187.28  Aligned_cols=142  Identities=25%  Similarity=0.342  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      +++|+++++.   +++++++||+||+++++|++.++++|+++++++            |++|| |+|. ++++++++  +
T Consensus       187 ~~~le~~l~~---~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~-~~~~~~~~--~  259 (429)
T 4e77_A          187 LASVRQAFEQ---YPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL-AGAQDYYH--V  259 (429)
T ss_dssp             HHHHHHHHHH---STTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT-TCHHHHTT--C
T ss_pred             HHHHHHHHHh---cCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc-chHHHhcC--C
Confidence            5667766653   556899999999999999999999999999999            99999 9997 78999998  9


Q ss_pred             CCchhcccccccCCcccccceecHHHHHhhhcCC-cccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG-VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~-~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      .||++|+||++++|+|+|++++++++++.+.... ..+.+||++||++|++++++|++++++++.+++++++++++++|+
T Consensus       260 ~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~  339 (429)
T 4e77_A          260 IPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLR  339 (429)
T ss_dssp             CCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999886532 246689999999999999999999889999999999999999997


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       340 ~~  341 (429)
T 4e77_A          340 HA  341 (429)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.90  E-value=1.2e-23  Score=185.72  Aligned_cols=142  Identities=25%  Similarity=0.397  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      +++|++.++.   .++++++||+||+++++|.+.++++|+++++++            |++|| |+|. ++++++++  +
T Consensus       190 ~~~le~~l~~---~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~-~~~~~~~~--~  262 (434)
T 2epj_A          190 VEALERVFAE---YGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGL-EGAQGYFN--I  262 (434)
T ss_dssp             HHHHHHHHHH---HGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSST-THHHHHHT--C
T ss_pred             HHHHHHHHHh---CCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCc-chhhHHhC--C
Confidence            4566666653   235799999999999999999999999999998            99999 8996 78889998  9


Q ss_pred             CCchhcccccccCCcccccceecHHHHHhhhcCC-cccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG-VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~-~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      .||++++||++++|+|+|++++++++++.+.... ..+.+||++||++|++++++|+.++++++.+++++++++|+++|+
T Consensus       263 ~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~  342 (434)
T 2epj_A          263 EGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAAS  342 (434)
T ss_dssp             CCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999886522 235689999999999999999999888999999999999999997


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       343 ~~  344 (434)
T 2epj_A          343 EV  344 (434)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.90  E-value=2.6e-23  Score=183.03  Aligned_cols=142  Identities=30%  Similarity=0.475  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-----------HHhCCccccccchhhhhcCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-----------VQVGFGRVGTHWWAFQLQGDDII  143 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----------v~tG~GrtG~~~~~~~~~g~~v~  143 (224)
                      +++|++.++.   .++++++||+||+++++|.+.++++|+++++++           +++|| |+|. ++++++++  +.
T Consensus       186 ~~~le~~l~~---~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~g~~lI~DEv~~g~-~~g~-~~~~~~~~--~~  258 (424)
T 2e7u_A          186 PEGLREVLKR---RGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEAKAYGVLLIADEVMTGF-RLAF-GGATELLG--LK  258 (424)
T ss_dssp             HHHHHHHHHH---HGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHGGGGTCEEEEECTTTTT-TSST-THHHHHHT--CC
T ss_pred             HHHHHHHHHh---CCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHcCCEEEEecCcccc-ccch-hHHHHHhC--CC
Confidence            4566666653   235799999999999999999999999999985           99999 9996 78889998  99


Q ss_pred             CchhcccccccCCcccccceecHHHHHhhhcCC-cccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhh
Q psy6205         144 PDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG-VEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       144 pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~-~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~l~  221 (224)
                      ||++++||++++|+|+|++++++++++.+.... ..+.+||++||++|++++++|+.+++ +++.+++++++++++++|+
T Consensus       259 ~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~  338 (424)
T 2e7u_A          259 PDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLK  338 (424)
T ss_dssp             CSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999886522 23568999999999999999999988 8999999999999999997


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       339 ~~  340 (424)
T 2e7u_A          339 EV  340 (424)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.90  E-value=1.9e-23  Score=184.24  Aligned_cols=141  Identities=23%  Similarity=0.320  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      +++|+++++.   +++++++||+||+++++|++.++++|+++++++            |++|| |+|. ++++++++  +
T Consensus       187 ~~~le~~l~~---~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~-~~~~~~~~--~  259 (429)
T 3k28_A          187 LESVKYAFEQ---FGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAY-NCGQGYYG--V  259 (429)
T ss_dssp             HHHHHHHHHH---HGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSST-THHHHHHT--C
T ss_pred             HHHHHHHHHh---CCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc-chHHHHhC--C
Confidence            5666666653   456899999999999999999999999999999            99999 9997 78899998  9


Q ss_pred             CCchhcccccccCCcccccceecHHHHHhhhcCC-cccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG-VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~-~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      .||++|+||++++|+|+|++++++++++.+.... ..+.+||++||++|++++++|+.++ +++.+++++++++++++|+
T Consensus       260 ~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~  338 (429)
T 3k28_A          260 TPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLR  338 (429)
T ss_dssp             CCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHH
T ss_pred             CCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999886432 2366899999999999999999987 7899999999999999997


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       339 ~~  340 (429)
T 3k28_A          339 KA  340 (429)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.89  E-value=5.1e-23  Score=181.19  Aligned_cols=142  Identities=24%  Similarity=0.324  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      +++|+++++   ++++++++|++||+++++|.+.++++|+++++++            +++|| |+|. ++++++++  +
T Consensus       186 ~~~le~~l~---~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~-~~~~~~~~--~  258 (427)
T 3fq8_A          186 LEAVKALFA---ENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAY-GGVQEKFG--V  258 (427)
T ss_dssp             HHHHHHHHH---HSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT-THHHHHTT--C
T ss_pred             HHHHHHHHH---hCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc-chhhHhcC--C
Confidence            456666665   3567899999999999999999999999999999            99999 9997 78899998  9


Q ss_pred             CCchhcccccccCCcccccceecHHHHHhhhcC-CcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQET-GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~-~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      .||++++||++++|+|+|++++++++++.+... ...+.+||++||+++++++++|+.++++++.+++++++++++++|+
T Consensus       259 ~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~  338 (427)
T 3fq8_A          259 TPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLL  338 (427)
T ss_dssp             CCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHH
T ss_pred             CCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988643 1246789999999999999999999889999999999999999997


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       339 ~~  340 (427)
T 3fq8_A          339 AI  340 (427)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.89  E-value=5.4e-23  Score=181.64  Aligned_cols=142  Identities=32%  Similarity=0.493  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCC
Q psy6205          74 YAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDD  141 (224)
Q Consensus        74 ~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~  141 (224)
                      .+++|++.++  ..+.+++++||+||+++++|.+.++++|+++++++            +++||||+|+ ++++++++  
T Consensus       186 d~~~le~~l~--~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~-~~~~~~~~--  260 (439)
T 3dxv_A          186 ILTLLTEKLA--AVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR-LHCFEHEG--  260 (439)
T ss_dssp             HHHHHHHHHH--TSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS-SSGGGGTT--
T ss_pred             HHHHHHHHHH--hcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhHHHhcC--
Confidence            4677777764  23567899999999999999999999999999998            9999999997 78889998  


Q ss_pred             CCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       142 v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +.||++++||++++|+|+|++++++++++.+...  .+.+|| +||+++++++++|+.++++++.+++++++++++++|+
T Consensus       261 ~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~~--~~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~  337 (439)
T 3dxv_A          261 FVPDILVLGKGLGGGLPLSAVIAPAEILDCASAF--AMQTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLS  337 (439)
T ss_dssp             CCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSSS--SCCTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEcchhcCCcceEEEEECHHHHhhhcCC--CcCCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988654  567899 9999999999999999889999999999999999997


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       338 ~~  339 (439)
T 3dxv_A          338 EL  339 (439)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.89  E-value=4.6e-23  Score=184.73  Aligned_cols=139  Identities=27%  Similarity=0.415  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCC
Q psy6205          74 YAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDD  141 (224)
Q Consensus        74 ~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~  141 (224)
                      ++++|++.++.......++++||+||+++++|+++|+++|++.|+++            ||+||||+|. +|+++++|  
T Consensus       241 d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~g--  317 (472)
T 1ohv_A          241 CLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK-FWAHEHWG--  317 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGC--
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCC-chhccccC--
Confidence            56777777753211112799999999999999999999999999999            9999999997 78999998  


Q ss_pred             CC--Cchhccccc-ccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy6205         142 II--PDIVTVGKP-MGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHT  218 (224)
Q Consensus       142 v~--pDi~~~~K~-l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~  218 (224)
                      +.  ||++||||+ +|||+++     ++++. .+.  ...+++||++||++|++++++|++++++++.+++++++++|++
T Consensus       318 v~~~~Di~t~sK~~l~GG~~~-----~~~~~-~~~--~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~  389 (472)
T 1ohv_A          318 LDDPADVMTFSKKMMTGGFFH-----KEEFR-PNA--PYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLT  389 (472)
T ss_dssp             CSSCCSEEEECGGGSSEEEEE-----CGGGS-CSS--SSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEccccccCCccC-----chhhc-ccc--cccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            86  999999999 8988753     55542 121  2246789999999999999999999888999999999999999


Q ss_pred             hhhhc
Q psy6205         219 PKKEN  223 (224)
Q Consensus       219 ~l~~l  223 (224)
                      +|+++
T Consensus       390 ~L~~l  394 (472)
T 1ohv_A          390 GLLDL  394 (472)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.89  E-value=7.3e-23  Score=182.07  Aligned_cols=142  Identities=27%  Similarity=0.420  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcC
Q psy6205          72 VKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQG  139 (224)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g  139 (224)
                      ..++++|++.++.   +.+++++||+||+++++|++.++++|+++++++            ||+||||+|. +|++++++
T Consensus       215 ~~~~~~le~~i~~---~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~~  290 (449)
T 2cjg_A          215 AEALRQARAAFET---RPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT-AWAYQQLD  290 (449)
T ss_dssp             HHHHHHHHHHHHH---STTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSTHHHHT
T ss_pred             HHHHHHHHHHHHh---cCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc-ceeecccC
Confidence            3456777777753   346899999999999999999999999999999            9999999997 78899998


Q ss_pred             CCCCCchhcccccccCCcccccceecHHHHHhhhc---CCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy6205         140 DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQE---TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL  216 (224)
Q Consensus       140 ~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~---~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l  216 (224)
                        +.||++|+||++    |+|++++++++++.+.+   ....+.+||++||+++++++++|+.++++++.+++++++++|
T Consensus       291 --~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l  364 (449)
T 2cjg_A          291 --VAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYL  364 (449)
T ss_dssp             --CCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             --CCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence              999999999999    99999999999886322   112456899999999999999999998889999999999999


Q ss_pred             HHhhhhc
Q psy6205         217 HTPKKEN  223 (224)
Q Consensus       217 ~~~l~~l  223 (224)
                      +++|+++
T Consensus       365 ~~~L~~l  371 (449)
T 2cjg_A          365 RARLDEL  371 (449)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.87  E-value=2.1e-22  Score=177.53  Aligned_cols=129  Identities=34%  Similarity=0.602  Sum_probs=116.5

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      +++++|++||+++.+|+++++++++++++++            +++||||+|+ ++++++++  +.||+++++|++++|+
T Consensus       200 ~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~-~~~~~~~~--~~~diit~sK~l~~G~  276 (420)
T 2pb2_A          200 DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD-LFAYMHYG--VTPDILTSAKALGGGF  276 (420)
T ss_dssp             TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSHHHHHT--CCCSEEEECGGGGTTS
T ss_pred             cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCc-HHHHHhcC--CCCCeEEecccccCCC
Confidence            4789999999999999999999999999998            9999999997 77888898  9999999999999999


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+|++++++++++.+...  .+.+||++||+++++++++|+.++++++.+++++++++|+++|+++
T Consensus       277 ~iG~~~~~~~l~~~l~~~--~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~  340 (420)
T 2pb2_A          277 PVSAMLTTQEIASAFHVG--SHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAI  340 (420)
T ss_dssp             CCEEEEECHHHHTTCC------CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEhHHHHHhhcCC--CcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            999999999998877543  4678999999999999999999988899999999999999999764

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.87  E-value=3.5e-22  Score=173.93  Aligned_cols=129  Identities=32%  Similarity=0.581  Sum_probs=119.4

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      +++++|++||+++++|.+.++++|+++++++            +++||||+|. ++++++++  +.||++|+||++++|+
T Consensus       178 ~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~-~~~~~~~~--~~~d~~t~sK~~~~G~  254 (395)
T 3nx3_A          178 EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK-FFAYEHAQ--ILPDIMTSAKALGCGL  254 (395)
T ss_dssp             TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGT--CCCSEEEECGGGTTTS
T ss_pred             CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc-chhHHhcC--CCCCEEEecccccCCC
Confidence            5789999999999999999999999999998            8999999997 78899998  9999999999999999


Q ss_pred             ccccceecHHH-HHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEI-AKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i-~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+|++++++++ ++.+...  .+.+||++||+++++++++|+.++++++.+++++++++++++|+++
T Consensus       255 ~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~  319 (395)
T 3nx3_A          255 SVGAFVINQKVASNSLEAG--DHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDEL  319 (395)
T ss_dssp             CCEEEEECHHHHHHHSCTT--CCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEchhhhhhhcCCc--ccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999 8887643  5678999999999999999999988899999999999999998753

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.87  E-value=1.8e-22  Score=179.18  Aligned_cols=141  Identities=23%  Similarity=0.341  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      +++|++.++.   +++++++||+||+++++|++.++++|+++|+++            |++|| |+|. ++++++++  +
T Consensus       188 ~~~le~~l~~---~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~-~~~~~~~~--~  260 (453)
T 2cy8_A          188 IEGMREVFAN---HGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGN-HGMQALLD--V  260 (453)
T ss_dssp             HHHHHHHHHH---HGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCT-THHHHHHT--C
T ss_pred             HHHHHHHHHh---cCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCc-hhhhHHhC--C
Confidence            4566666653   335789999999999999999999999999999            99999 9996 78889998  9


Q ss_pred             CCchhcccccccCCcccccceecHHHHHhhhc---CCcccccCCCCcHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHH
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQE---TGVEYFNTYGGNPVSCAVANAVMEV-LETENLREHALDVGNQLHT  218 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~---~~~~~~~T~~~~p~~~aaa~a~l~~-~~~~~l~~~~~~~g~~l~~  218 (224)
                      .||++++||++++|+|+|++++++++++.+..   ....+.+||++||+++++++++|+. + ++++.+++++++++|++
T Consensus       261 ~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~l~~  339 (453)
T 2cy8_A          261 QPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-EDDVCAKINDLGQFARE  339 (453)
T ss_dssp             CCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred             CCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998865   1123567999999999999999999 8 78899999999999999


Q ss_pred             hhhhc
Q psy6205         219 PKKEN  223 (224)
Q Consensus       219 ~l~~l  223 (224)
                      +|+++
T Consensus       340 ~L~~~  344 (453)
T 2cy8_A          340 AMNHL  344 (453)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99764

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.86  E-value=5.7e-21  Score=168.07  Aligned_cols=140  Identities=28%  Similarity=0.539  Sum_probs=117.7

Q ss_pred             HHHHHH-HHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCC
Q psy6205          74 YAQDVQ-DLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGD  140 (224)
Q Consensus        74 ~~~~l~-~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~  140 (224)
                      .+++|+ +.++.. ..++++++|++||+++..|.+.++++|+++++++            +++||||+|. ++++++++ 
T Consensus       195 ~~~~l~~~~i~~~-~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~-~~~~~~~~-  271 (419)
T 2eo5_A          195 VIEFIEDYIFVNL-VPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK-LFAIENFN-  271 (419)
T ss_dssp             HHHHHHHTHHHHT-CCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGT-
T ss_pred             HHHHHHHHHHhhc-cCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc-hhhHHhcC-
Confidence            466777 666531 1125789999999999999999999999999998            9999999997 67888887 


Q ss_pred             CCCCchhcccccccCC-cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy6205         141 DIIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTP  219 (224)
Q Consensus       141 ~v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~  219 (224)
                       +.||++|+||++++| +|+|+++++++++ .+ ..  .+.+||++||++++++.++|+.+++  +.++++++.++|.++
T Consensus       272 -~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~~--~~~~t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~  344 (419)
T 2eo5_A          272 -TVPDVITLAKALGGGIMPIGATIFRKDLD-FK-PG--MHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEE  344 (419)
T ss_dssp             -CCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC---------CCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred             -CCCCEEEecccccCCccceEEEEEchHhh-cC-Cc--ccCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence             999999999999999 9999999999988 66 32  4668999999999999999999865  899999999999999


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |+++
T Consensus       345 L~~~  348 (419)
T 2eo5_A          345 LQGL  348 (419)
T ss_dssp             HTTS
T ss_pred             HHHh
Confidence            9764

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.85  E-value=8.9e-21  Score=166.97  Aligned_cols=143  Identities=29%  Similarity=0.485  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccc-cCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESL-QSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDD  141 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv-~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~  141 (224)
                      +++|++.++.   +++++++|++||+ ++..|.+.++++++++++++            +++||||+|. ++++++++  
T Consensus       191 ~~~l~~~l~~---~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~-~~~~~~~~--  264 (429)
T 1s0a_A          191 MVGFARLMAA---HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK-LFACEHAE--  264 (429)
T ss_dssp             GHHHHHHHHH---HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGT--
T ss_pred             HHHHHHHHHh---CCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch-HHHhhhcC--
Confidence            4666666653   3457899999999 99999999999999999998            9999999997 67888887  


Q ss_pred             CCCchhcccccccCC-cccccceecHHHHHhhhcCC-c--ccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy6205         142 IIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETG-V--EYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH  217 (224)
Q Consensus       142 v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~-~--~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~  217 (224)
                      +.||++++||++++| +|+|++++++++++.+.... .  .+.+||++||++++++.++|+.++++++.++++++.++|+
T Consensus       265 ~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~  344 (429)
T 1s0a_A          265 IAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLR  344 (429)
T ss_dssp             CCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            999999999999999 89999999999999886521 1  2457999999999999999999988889999999999999


Q ss_pred             Hhhhhc
Q psy6205         218 TPKKEN  223 (224)
Q Consensus       218 ~~l~~l  223 (224)
                      ++|+++
T Consensus       345 ~~L~~l  350 (429)
T 1s0a_A          345 EQLAPA  350 (429)
T ss_dssp             HHHGGG
T ss_pred             HHHHHH
Confidence            999874

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.80  E-value=5.2e-19  Score=154.97  Aligned_cols=144  Identities=28%  Similarity=0.460  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCC
Q psy6205          74 YAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDD  141 (224)
Q Consensus        74 ~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~  141 (224)
                      .+++|++.++.. .+++++++|++||++++.|.+.+++++++++.++            +++||+++|. +++++.++  
T Consensus       183 d~~~l~~~l~~~-~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~--  258 (426)
T 1sff_A          183 AIASIHRIFKND-AAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT-LFAMEQMG--  258 (426)
T ss_dssp             HHHHHHHHHHHT-CCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTT--
T ss_pred             HHHHHHHHHHhc-cCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc-hhhhhhcC--
Confidence            356677666531 1235789999999999999999999999999998            8999999997 67788887  


Q ss_pred             CCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         142 IIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       142 v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +.||++++||.+++|+++|++++++++++.+...  .+.+||+.||++++++.++|+.++++++.++++++.++++++|+
T Consensus       259 ~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~  336 (426)
T 1sff_A          259 VAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPG--GLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLL  336 (426)
T ss_dssp             SCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCTT--SBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEcccccCCCceEEEEEcHHHHhhhccC--CcCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999887542  45689999999999999999999888999999999999999987


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       337 ~~  338 (426)
T 1sff_A          337 AI  338 (426)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.79  E-value=9.1e-19  Score=151.97  Aligned_cols=129  Identities=36%  Similarity=0.666  Sum_probs=119.0

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-  156 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-  156 (224)
                      +++++|++||+++..|.+.++++|++++.++            +++|||++|. +++++.++  +.||++++||+|+|| 
T Consensus       181 ~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~--~~~d~~~~SK~l~gG~  257 (392)
T 3ruy_A          181 PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK-VFACDWDN--VTPDMYILGKALGGGV  257 (392)
T ss_dssp             TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS-SSGGGGGT--CCCSEEEECGGGGTTT
T ss_pred             cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc-chhhhccC--CCCCEEEEchhhhCCh
Confidence            5789999999999999999999999999998            8999999997 78888888  999999999999999 


Q ss_pred             cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++|++++++++++.+...  .+.+||+.||++++++.++|+.++++++.++++++.++|++.|+++
T Consensus       258 ~~~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  322 (392)
T 3ruy_A          258 FPISCAAANRDILGVFEPG--SHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEI  322 (392)
T ss_dssp             SCCEEEEECHHHHTTCCTT--SSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhEEEEECHHHHhhhccC--CcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999887643  5668999999999999999999988899999999999999999875

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.77  E-value=1.4e-18  Score=151.19  Aligned_cols=129  Identities=30%  Similarity=0.530  Sum_probs=118.4

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      +++++|++||+.+.+|++++++++++++.++            +++|||++|. .++.+.++  +.||++|++|.+++|+
T Consensus       182 ~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~--~~~d~~t~sK~~~~G~  258 (406)
T 4adb_A          182 DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE-LYAYMHYG--VTPDLLTTAKALGGGF  258 (406)
T ss_dssp             TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSHHHHHT--CCCSEEEECGGGGTTS
T ss_pred             CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hHHHHhcC--CCCCEEEechhhcCCC
Confidence            5789999999999999999999999999998            8899999997 67888898  9999999999999889


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++|++++++++++.+...  .+.+||++||++++++.++|+.++++++.++++++.+++.++|+++
T Consensus       259 r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~  322 (406)
T 4adb_A          259 PVGALLATEECARVMTVG--THGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTI  322 (406)
T ss_dssp             CCEEEEECHHHHHTCCTT--SSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcHHHHhhhccC--CcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988643  4668999999999999999999988899999999999999999764

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.70  E-value=1e-16  Score=139.12  Aligned_cols=129  Identities=31%  Similarity=0.534  Sum_probs=115.1

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      +++++|+++|+++..|.+.+++++++++.++            +++||+++|+ .+.++.++  +.||+++++|.+++|+
T Consensus       184 ~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~-~~~~~~~~--~~~d~~s~sK~~~~g~  260 (395)
T 1vef_A          184 EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK-RFAFEHFG--IVPDILTLAKALGGGV  260 (395)
T ss_dssp             TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHT--CCCSEEEECGGGGTTS
T ss_pred             cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc-hhHhhhcC--CCCCEEEEcccccCCC
Confidence            3689999999999899999999999999988            8889999996 66777887  8899999999999999


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++|++++++++++.+...  .+.+||+.|+++++++.++|+.++++++.++++++.+++.++|+++
T Consensus       261 ~~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~  324 (395)
T 1vef_A          261 PLGVAVMREEVARSMPKG--GHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI  324 (395)
T ss_dssp             SCEEEEEEHHHHHTSCTT--SSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTS
T ss_pred             ceEEEEehHHHHhhhccC--CcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence            999999999998877542  3567999999999999999999987889999999999999999875

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.67  E-value=1.3e-16  Score=138.68  Aligned_cols=128  Identities=33%  Similarity=0.590  Sum_probs=113.0

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      +++++|++||+++..|.+.+++++++++.++            +++||+++|+ .+..+.++  +.||+++++|.+++|+
T Consensus       182 ~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~--~~~d~~s~sK~~~~G~  258 (397)
T 2ord_A          182 EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK-LFAYQKYG--VVPDVLTTAKGLGGGV  258 (397)
T ss_dssp             TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSHHHHHT--CCCSEEEECGGGGTTS
T ss_pred             cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc-chhhhhhC--CCCCeeeeccccCCCc
Confidence            4789999999999999988889999999888            8899999997 66778887  8899999999999999


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++|+++++++++ .+...  .+..||+.||++++++.++|+.++++++.++++++.++|.+.|+++
T Consensus       259 r~G~~~~~~~~~-~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  321 (397)
T 2ord_A          259 PIGAVIVNERAN-VLEPG--DHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEM  321 (397)
T ss_dssp             CCEEEEECSTTC-CCCTT--SSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEchHhc-ccCCC--CcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            999999998876 55432  4567999999999999999999987889999999999999998764

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.63  E-value=1.5e-15  Score=130.57  Aligned_cols=127  Identities=31%  Similarity=0.596  Sum_probs=112.0

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~  157 (224)
                      +++++|+++|.++..|.+.+++++++++.++            +++|||+++. .+..+.++  +.||++++||.+++|+
T Consensus       171 ~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~--~~~d~~s~SK~~~~g~  247 (375)
T 2eh6_A          171 EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQHFN--LKPDVIALAKGLGGGV  247 (375)
T ss_dssp             TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGT--CCCSEEEECGGGGTTS
T ss_pred             CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-chhhhhcC--CCCCEEEEcccccCCC
Confidence            4789999999999999999999999999888            8889999986 56677787  8899999999999999


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++|++++++++++.+...  .+..||+.|+++++++.++|+.++  ++.++++++.++|.+.|+++
T Consensus       248 ~~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~  309 (375)
T 2eh6_A          248 PIGAILAREEVAQSFTPG--SHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKEL  309 (375)
T ss_dssp             CCEEEEEEHHHHTTCCTT--SCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEEcHHHHhhhcCC--CCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            999999999998877542  356789999999999999999886  78899999999999999875

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.45  E-value=3e-13  Score=118.53  Aligned_cols=139  Identities=12%  Similarity=0.079  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhh-----h
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQ-----L  137 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~-----~  137 (224)
                      +++|++.+..     +++++|++++.++.+| ..++++.+++++++            ++++|+++|.....+.     .
T Consensus       183 ~~~le~~i~~-----~~~~~vil~~p~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~  256 (421)
T 3l8a_A          183 FEQLEKDIID-----NNVKIYLLCSPHNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASY  256 (421)
T ss_dssp             HHHHHHHHHH-----TTEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTG
T ss_pred             HHHHHHHhhc-----cCCeEEEECCCCCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchh
Confidence            4566666642     4688999999999999 56677779999888            9999999985222222     2


Q ss_pred             cCCCCCCchhccccccc-CCcccccceec-HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHH
Q psy6205         138 QGDDIIPDIVTVGKPMG-NGHPVAAVITT-KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVG  213 (224)
Q Consensus       138 ~g~~v~pDi~~~~K~l~-~G~p~~av~~~-~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g  213 (224)
                      .+  ..+++.+++|+++ +|+|+|+++++ +++++.+... .....++++||++++++.++|+..++  +++.++++++.
T Consensus       257 ~~--~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~-~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~  333 (421)
T 3l8a_A          257 KD--FTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYR-QLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNI  333 (421)
T ss_dssp             GG--TEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHH-HHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             cC--cEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHH-HHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            33  5677889999998 78999999998 8999888653 12345678999999999999996542  46777788888


Q ss_pred             HHHHHhhhh
Q psy6205         214 NQLHTPKKE  222 (224)
Q Consensus       214 ~~l~~~l~~  222 (224)
                      ++|.+.|++
T Consensus       334 ~~l~~~L~~  342 (421)
T 3l8a_A          334 KLVIKELEA  342 (421)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888888875

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.41  E-value=6.1e-13  Score=116.97  Aligned_cols=140  Identities=21%  Similarity=0.209  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHccCCC-CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhC--CccccccchhhhhcCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGK-RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVG--FGRVGTHWWAFQLQGDDII  143 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~-~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG--~GrtG~~~~~~~~~g~~v~  143 (224)
                      +++|++.++.   ..+ ++++|++|++++..|.+.+.++..+.+++.        ++++  ++++|.  +..++++  +.
T Consensus       180 ~~~le~~l~~---~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~--~~~~~~~--~~  252 (427)
T 2w8t_A          180 VEDLDKRLGR---LPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGR--GVYEAQG--LE  252 (427)
T ss_dssp             HHHHHHHHHT---SCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSC--CHHHHTT--CT
T ss_pred             HHHHHHHHHh---ccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCC--chHhhcC--CC
Confidence            4566666652   223 789999999999999988855555555554        7776  466675  3567787  88


Q ss_pred             Cc----hhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHH
Q psy6205         144 PD----IVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHT  218 (224)
Q Consensus       144 pD----i~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~  218 (224)
                      ||    +.+++|.+|  .|.|++++++++++.+......+.+|++.||+++++++++|+.+++ +++.++++++.++|++
T Consensus       253 ~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~  330 (427)
T 2w8t_A          253 GQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHG  330 (427)
T ss_dssp             TCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             cCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            88    778999996  4568899999999988765334557889999999999999999976 7899999999999999


Q ss_pred             hhhhc
Q psy6205         219 PKKEN  223 (224)
Q Consensus       219 ~l~~l  223 (224)
                      .|+++
T Consensus       331 ~L~~~  335 (427)
T 2w8t_A          331 GLKAM  335 (427)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            99864

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.28  E-value=1.1e-11  Score=108.03  Aligned_cols=139  Identities=17%  Similarity=0.189  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhC--CccccccchhhhhcCCCC--
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVG--FGRVGTHWWAFQLQGDDI--  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG--~GrtG~~~~~~~~~g~~v--  142 (224)
                      +++|++.++.     .+.++|+++++++..|.+.+.++..+.+++.        ++++  +|++|. .+. +.++  +  
T Consensus       175 ~~~le~~l~~-----~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~-~~~-~~~~--~~~  245 (409)
T 3kki_A          175 CDHLRMLIQR-----HGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGA-GLL-AELG--LTR  245 (409)
T ss_dssp             HHHHHHHHHH-----HCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGC-CHH-HHHT--CGG
T ss_pred             HHHHHHHHHh-----cCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCC-cch-hhcC--CCC
Confidence            4566666653     2358999999999999888855555555555        8888  899996 444 6666  6  


Q ss_pred             CCch--hcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHh
Q psy6205         143 IPDI--VTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTP  219 (224)
Q Consensus       143 ~pDi--~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~  219 (224)
                      .+||  .+++|++++|  .|++++++++++.+......+.++...+|+++++++++|+.+++ +.+.++++++.++|.+.
T Consensus       246 ~~di~~~s~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~  323 (409)
T 3kki_A          246 EVHFMTASLAKTFAYR--AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIG  323 (409)
T ss_dssp             GCSEEEEESSSTTCSS--CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEeecchhhCCC--ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            5777  6799999876  47799999998877653223334555899999999999999965 58889999999999999


Q ss_pred             hhhcC
Q psy6205         220 KKENN  224 (224)
Q Consensus       220 l~~l~  224 (224)
                      |++++
T Consensus       324 L~~~g  328 (409)
T 3kki_A          324 LSQLG  328 (409)
T ss_dssp             HHTTT
T ss_pred             HHHcC
Confidence            98753

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.24  E-value=4.1e-11  Score=103.37  Aligned_cols=143  Identities=22%  Similarity=0.271  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HH-hCC-ccccccchhhhhcCCCC--C
Q psy6205          76 QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQ-VGF-GRVGTHWWAFQLQGDDI--I  143 (224)
Q Consensus        76 ~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~-tG~-GrtG~~~~~~~~~g~~v--~  143 (224)
                      ++|++.++.....+.++++|++++.+...|.+.+.++..+.+++.        ++ .|+ +++|.  +..+.++  +  .
T Consensus       160 ~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~--~~~~  235 (399)
T 3tqx_A          160 GDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGR--GTPEYCG--VADR  235 (399)
T ss_dssp             THHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSC--CHHHHHT--CTTC
T ss_pred             HHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCC--chHHhhC--CCCC
Confidence            456666664322233799999999999999988855555555554        66 675 77775  3567776  6  7


Q ss_pred             Cchh--cccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH-h-hhhHHHHHHHHHHHHHHh
Q psy6205         144 PDIV--TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL-E-TENLREHALDVGNQLHTP  219 (224)
Q Consensus       144 pDi~--~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~-~-~~~l~~~~~~~g~~l~~~  219 (224)
                      ||++  +++|.++ |.|.|++++++++++.+......+..|.+.++++++++.++++.+ + .+++.++++++.+++.+.
T Consensus       236 ~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  314 (399)
T 3tqx_A          236 VDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAG  314 (399)
T ss_dssp             CSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence            9998  8999998 677789999999999887543334457789999999999999998 4 468899999999999999


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |+++
T Consensus       315 L~~~  318 (399)
T 3tqx_A          315 MEKL  318 (399)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            9875

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.18  E-value=1.7e-10  Score=99.91  Aligned_cols=144  Identities=20%  Similarity=0.285  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HH-hCC-ccccccchhhhhcCCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQ-VGF-GRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~-tG~-GrtG~~~~~~~~~g~~v~p  144 (224)
                      .++|++.++.....+.++++|++++.+...|.+.+.++..+.+++.        ++ +|+ +++|+ .+ .+.++  +.|
T Consensus       161 ~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~-~~-~~~~~--~~~  236 (401)
T 1fc4_A          161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGR-GS-HEYCD--VMG  236 (401)
T ss_dssp             HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSC-CH-HHHTT--CTT
T ss_pred             HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCC-cc-HHHcC--CCc
Confidence            4566666653211122688999999999999888855555555554        77 588 56786 33 45565  654


Q ss_pred             --chh--cccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHh
Q psy6205         145 --DIV--TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTP  219 (224)
Q Consensus       145 --Di~--~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~  219 (224)
                        |++  +++|.++|+. .|++++++++++.+......+.+|++.|+++++++.++|+.+++ +++.++++++.++|.+.
T Consensus       237 ~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~  315 (401)
T 1fc4_A          237 RVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQ  315 (401)
T ss_dssp             CCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence              777  8999997664 48899999999988653223445889999999999999999864 68899999999999999


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |+++
T Consensus       316 L~~~  319 (401)
T 1fc4_A          316 MSAA  319 (401)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            9875

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.10  E-value=4.5e-10  Score=96.33  Aligned_cols=127  Identities=12%  Similarity=0.097  Sum_probs=98.4

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhccccccc-CC
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMG-NG  156 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~-~G  156 (224)
                      +++.+|++++.+...|.+. ++++++++.++            ++++|++.+. ....+.++  ..+++.+++|.++ .|
T Consensus       153 ~~~~~v~~~~~~nptG~~~-~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~-~~~~~~~~--~~i~~~s~sK~~~~~G  228 (375)
T 3op7_A          153 PTTKMICINNANNPTGAVM-DRTYLEELVEIASEVGAYILSDEVYRSFSELDV-PSIIEVYD--KGIAVNSLSKTYSLPG  228 (375)
T ss_dssp             TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCC-CCHHHHCT--TEEEEEESSSSSSCGG
T ss_pred             cCCeEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccccccccCC-CchhhhcC--CEEEEeEChhhcCCcc
Confidence            4678999999888888655 66778888887            7778776643 33455565  7788999999998 78


Q ss_pred             cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhh
Q psy6205         157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +++|++++++++++.+...  ...++++.++++++++.++|+..++  ++..++++++.+++.+.|++
T Consensus       229 ~r~G~v~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~  294 (375)
T 3op7_A          229 IRIGWVAANHQVTDILRDY--RDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQWIEE  294 (375)
T ss_dssp             GCCEEEECCHHHHHHHTTT--GGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEeCHHHHHHHHHH--HhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999988654  4557888999999999999986543  34555567777777777765

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.08  E-value=8e-10  Score=95.07  Aligned_cols=140  Identities=19%  Similarity=0.249  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HH-hCC-ccccccchhhhhcCCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQ-VGF-GRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~-tG~-GrtG~~~~~~~~~g~~v~p  144 (224)
                      .++|++.++   +..++.++|++++.+...|.+.+.++..+.+++.        ++ .|+ +++|. .+ .+.++  ..|
T Consensus       155 ~~~l~~~l~---~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~-~~~~~--~~~  227 (384)
T 1bs0_A          155 VTHLARLLA---SPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGR-GS-CWLQK--VKP  227 (384)
T ss_dssp             HHHHHHHHH---SCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGC-CH-HHHTT--CCC
T ss_pred             HHHHHHHHH---hcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCC-ch-HHhcC--CCC
Confidence            345665554   2333478999999999999988866666666655        54 464 67775 33 35676  779


Q ss_pred             chh--cccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHh
Q psy6205         145 DIV--TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHTP  219 (224)
Q Consensus       145 Di~--~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~~  219 (224)
                      |++  +++|.++.  |.|++++++++++.+......+.+|++.|+++++++.++|+.+++   +++.++++++.+++.+.
T Consensus       228 di~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~  305 (384)
T 1bs0_A          228 ELLVVTFGKGFGV--SGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAG  305 (384)
T ss_dssp             SEEEEESSSTTSS--CCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEeeccchhhc--cCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            998  89999973  347789999999888653223446678999999999999999873   47889999999999999


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |+++
T Consensus       306 L~~~  309 (384)
T 1bs0_A          306 VQDL  309 (384)
T ss_dssp             HTTS
T ss_pred             HHhc
Confidence            9875

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.04  E-value=4.4e-10  Score=98.26  Aligned_cols=129  Identities=11%  Similarity=0.027  Sum_probs=96.2

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhh----hcCCCCCCchhcccccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQ----LQGDDIIPDIVTVGKPM  153 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~----~~g~~v~pDi~~~~K~l  153 (224)
                      +++++|+++..+...|.+. ++++++++.++            ++++|+++|.......    .++  ..+++.+++|.+
T Consensus       181 ~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~s~sK~~  257 (429)
T 1yiz_A          181 EKTKMIIINTPHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWE--RTITIGSAGKTF  257 (429)
T ss_dssp             TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGG--GEEEEEEHHHHH
T ss_pred             cCceEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcC--ceEEEecchhcc
Confidence            4678899998888888765 57788888887            8888877664111221    233  566778999999


Q ss_pred             c-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH-----Hhhh----hHHHHHHHHHHHHHHhhhhc
Q psy6205         154 G-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV-----LETE----NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       154 ~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~-----~~~~----~l~~~~~~~g~~l~~~l~~l  223 (224)
                      | .|+++|++++++++++.+...  ....||+.|+++++++.++|+.     ...+    ++.++++++.++|.+.|+++
T Consensus       258 ~~~G~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  335 (429)
T 1yiz_A          258 SLTGWKIGWAYGPEALLKNLQMV--HQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV  335 (429)
T ss_dssp             TCGGGCCEEEESCHHHHHHHHHH--HHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcceEEEEeCHHHHHHHHHH--HhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            8 789999999999999988643  3456899999999999999998     4223    34555667777777777653

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.01  E-value=2.2e-09  Score=92.95  Aligned_cols=140  Identities=22%  Similarity=0.262  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh-C-CccccccchhhhhcCCCC--
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV-G-FGRVGTHWWAFQLQGDDI--  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t-G-~GrtG~~~~~~~~~g~~v--  142 (224)
                      .++|+++++..  .++++++|++++++...|.+.+.++..+.+++.        +++ | ||++|. .+. ..++  +  
T Consensus       164 ~~~le~~l~~~--~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~-~~~-~~~~--~~~  237 (401)
T 2bwn_A          164 VAHLRELIAAD--DPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGA-GVA-ERDG--LMH  237 (401)
T ss_dssp             HHHHHHHHHHS--CTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSC-CHH-HHHT--CGG
T ss_pred             HHHHHHHHHhh--ccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCc-eee-eccC--ccc
Confidence            46677777642  224788999999999999988866666666666        666 3 678886 343 5555  4  


Q ss_pred             CCchh--cccccccC-CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHH
Q psy6205         143 IPDIV--TVGKPMGN-GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQL  216 (224)
Q Consensus       143 ~pDi~--~~~K~l~~-G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l  216 (224)
                      .+|++  +++|+++. |   |.+++++++.+.+......+.++.+.+|++++++.++|+.+++   +++.++++++.+++
T Consensus       238 ~~~i~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  314 (401)
T 2bwn_A          238 RIDIFNGTLAKAYGVFG---GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVL  314 (401)
T ss_dssp             GCSEEEEESSSTTCSCC---EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             cCcEEEeechhhccCCC---CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            34554  89999982 3   4478899998887642222233444578999999999999976   47889999999999


Q ss_pred             HHhhhhc
Q psy6205         217 HTPKKEN  223 (224)
Q Consensus       217 ~~~l~~l  223 (224)
                      .+.|+++
T Consensus       315 ~~~L~~~  321 (401)
T 2bwn_A          315 KMRLKAL  321 (401)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHC
Confidence            9999764

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=98.98  E-value=2.2e-09  Score=94.11  Aligned_cols=144  Identities=9%  Similarity=0.055  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCC-
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDD-  141 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~-  141 (224)
                      +++|++.++.......++.+|++++.+...|.+. +.+.++++.++            ++++++++|..+.....+..+ 
T Consensus       175 ~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~  253 (435)
T 3piu_A          175 ETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTM-TRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDR  253 (435)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhcccc
Confidence            4566666654333345788899998777788755 45557777666            888877777533333333200 


Q ss_pred             -CC-----Cc----hhccccccc-CCccccccee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--h---hh
Q psy6205         142 -II-----PD----IVTVGKPMG-NGHPVAAVIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--T---EN  204 (224)
Q Consensus       142 -v~-----pD----i~~~~K~l~-~G~p~~av~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~---~~  204 (224)
                       +.     ||    +.+++|++| +|+++|++++ ++++.+.+..    +..++..++++++++.++|+..+  +   ++
T Consensus       254 ~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  329 (435)
T 3piu_A          254 NCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK----MSSFGLVSSQTQHLLSAMLSDKKLTKNYIAE  329 (435)
T ss_dssp             ------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH----HGGGSCCCHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             ccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH----HhhcCCCCHHHHHHHHHHhcChHHHHHHHHH
Confidence             11     45    568999998 7899999999 6778777653    23456678898888888886432  1   34


Q ss_pred             HHHHHHHHHHHHHHhhhhc
Q psy6205         205 LREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       205 l~~~~~~~g~~l~~~l~~l  223 (224)
                      ..++++++.++|.+.|+++
T Consensus       330 ~~~~~~~~~~~l~~~L~~~  348 (435)
T 3piu_A          330 NHKRLKQRQKKLVSGLQKS  348 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            5667778888888888764

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=98.96  E-value=9e-10  Score=94.72  Aligned_cols=128  Identities=16%  Similarity=0.152  Sum_probs=96.9

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCC--ccccccchhhhhcCCCCCCchhccccccc-
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGF--GRVGTHWWAFQLQGDDIIPDIVTVGKPMG-  154 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~--GrtG~~~~~~~~~g~~v~pDi~~~~K~l~-  154 (224)
                      +++.+|+++..+...|.+. ++++++++.++            ++++|  |+.+..++.. ..+  ..+++.+++|.++ 
T Consensus       151 ~~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~-~~~--~~~~~~s~sK~~~~  226 (381)
T 1v2d_A          151 PRTRALLLNTPMNPTGLVF-GERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF-APE--RTFTVGSAGKRLEA  226 (381)
T ss_dssp             TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH-CTT--TEEEEEEHHHHTTC
T ss_pred             cCCEEEEECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh-cCC--CEEEEeechhhcCC
Confidence            3578899888877788764 56778888777            77776  3433222222 344  7788889999998 


Q ss_pred             CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH--hh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         155 NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL--ET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 ~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~--~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .|+++|++++++++++.+...  ....+|+.++++++++.++|+..  ++  +++.++++++.++|.+.|+++
T Consensus       227 ~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  297 (381)
T 1v2d_A          227 TGYRVGWIVGPKEFMPRLAGM--RQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM  297 (381)
T ss_dssp             GGGCCEEEECCTTTHHHHHHH--HHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccceEEEEeCHHHHHHHHHH--HhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            689999999999998887643  33458889999999999999976  33  467788889999999998764

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=98.92  E-value=3.1e-09  Score=91.22  Aligned_cols=140  Identities=9%  Similarity=-0.044  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      +++|++.++     ..++.+|+++..+...|.+. +++.++++.++            ++++|.+.|........++ .-
T Consensus       149 ~~~l~~~l~-----~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~  221 (391)
T 3dzz_A          149 WADLEEKLA-----TPSVRMMVFCNPHNPIGYAW-SEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVD-WD  221 (391)
T ss_dssp             HHHHHHHHT-----STTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSC-TT
T ss_pred             HHHHHHHHh-----ccCceEEEEECCCCCCCccc-CHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcC-cc
Confidence            455555543     13677888877788888765 45557777776            8888888875334444443 12


Q ss_pred             CCc----hhccccccc-CCcccccceec-HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHH
Q psy6205         143 IPD----IVTVGKPMG-NGHPVAAVITT-KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGN  214 (224)
Q Consensus       143 ~pD----i~~~~K~l~-~G~p~~av~~~-~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~  214 (224)
                      .||    +.+++|.+| .|+++|+++++ +++++.+... .....+++.|+++++++.++|+..+  -++..++++++.+
T Consensus       222 ~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  300 (391)
T 3dzz_A          222 AKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEES-FFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFA  300 (391)
T ss_dssp             TGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHH-HHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             ccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHH-HHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            288    667999998 78999999997 9998887643 1224577899999999999998743  3467778888888


Q ss_pred             HHHHhhhh
Q psy6205         215 QLHTPKKE  222 (224)
Q Consensus       215 ~l~~~l~~  222 (224)
                      +|.+.|++
T Consensus       301 ~l~~~l~~  308 (391)
T 3dzz_A          301 YAREFLAK  308 (391)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88888876

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=98.91  E-value=2.9e-09  Score=91.11  Aligned_cols=137  Identities=12%  Similarity=0.070  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCcccc-cc---chhhhhc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVG-TH---WWAFQLQ  138 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG-~~---~~~~~~~  138 (224)
                      +++|++.++   .  +..+.++..| +...|.+. +.+.++++.++            ++++|.++| ..   ++.....
T Consensus       140 ~~~l~~~l~---~--~~~~v~i~~p-~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~  212 (377)
T 3fdb_A          140 LHDVEKGFQ---A--GARSILLCNP-YNPLGMVF-APEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAA  212 (377)
T ss_dssp             HHHHHHHHH---T--TCCEEEEESS-BTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHH
T ss_pred             HHHHHHHhc---c--CCCEEEEeCC-CCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCC
Confidence            455665554   1  2334445555 77778755 55557777766            888887777 21   2233333


Q ss_pred             CCCCCCchhccccccc-CCccccccee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHH
Q psy6205         139 GDDIIPDIVTVGKPMG-NGHPVAAVIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGN  214 (224)
Q Consensus       139 g~~v~pDi~~~~K~l~-~G~p~~av~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~  214 (224)
                      +  ..+++.+++|.+| +|+++|++++ ++++++.+...  ....|++.|+++++++.++|+..++  ++..++++++.+
T Consensus       213 ~--~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  288 (377)
T 3fdb_A          213 S--VCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQL--SPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHD  288 (377)
T ss_dssp             H--HEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHS--CHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             C--cEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHH--HHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            3  4567778999997 6899996655 88999888754  3446789999999999999987533  567788888888


Q ss_pred             HHHHhhhh
Q psy6205         215 QLHTPKKE  222 (224)
Q Consensus       215 ~l~~~l~~  222 (224)
                      +|.+.|++
T Consensus       289 ~l~~~L~~  296 (377)
T 3fdb_A          289 FLLHEIPK  296 (377)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88888876

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=98.89  E-value=4.4e-09  Score=91.10  Aligned_cols=131  Identities=12%  Similarity=0.047  Sum_probs=95.9

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCC--CCCCchhccccccc-
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGD--DIIPDIVTVGKPMG-  154 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~--~v~pDi~~~~K~l~-  154 (224)
                      .++.+|+++..+...|.+. +++.++++.++            ++++|.++|........+..  +...++.+++|.+| 
T Consensus       166 ~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~  244 (410)
T 3e2y_A          166 SKTKAIILNTPHNPLGKVY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSV  244 (410)
T ss_dssp             TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSC
T ss_pred             CCceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCC
Confidence            3688999998888888765 55667777776            88888888752223333320  12244557899999 


Q ss_pred             CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH-------Hh--hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         155 NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV-------LE--TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 ~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~-------~~--~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .|+++|++++++++++.+...  ....|++.++++++++.++|+.       .+  -+++.++++++.++|.+.|+++
T Consensus       245 ~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  320 (410)
T 3e2y_A          245 TGWKLGWSIGPAHLIKHLQTV--QQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV  320 (410)
T ss_dssp             GGGCCEEEECCHHHHHHHHHH--HHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCceEEEEEECHHHHHHHHHH--HHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            789999999999999888643  3456899999999999999984       11  1356677778888888888765

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=98.89  E-value=3.7e-09  Score=93.32  Aligned_cols=129  Identities=9%  Similarity=0.053  Sum_probs=97.9

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccc--cchhh--hhcCCCCCCchhcccccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGT--HWWAF--QLQGDDIIPDIVTVGKPM  153 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~--~~~~~--~~~g~~v~pDi~~~~K~l  153 (224)
                      +++.+|+++..+...|.+. +++.++++.++            ++++|.++|.  .+...  ..++  ..+++.+++|.+
T Consensus       200 ~~~~~v~l~~p~nptG~~~-~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~--~~i~i~S~sK~~  276 (447)
T 3b46_A          200 SKTKAVIINTPHNPIGKVF-TREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQ--LTLTVGSAGKSF  276 (447)
T ss_dssp             TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHT--TEEEEEEHHHHT
T ss_pred             cCCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCC--cEEEEecCchhc
Confidence            4678888887777788764 57888888887            7888766663  12222  2344  677788999999


Q ss_pred             c-CCccccccee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHhhhhc
Q psy6205         154 G-NGHPVAAVIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETE----NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       154 ~-~G~p~~av~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~----~l~~~~~~~g~~l~~~l~~l  223 (224)
                      + .|+++|++++ ++++++.+...  ....||+.++++++++.++|+....+    .+.++++++.++|.+.|+++
T Consensus       277 ~~~G~riG~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  350 (447)
T 3b46_A          277 AATGWRIGWVLSLNAELLSYAAKA--HTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL  350 (447)
T ss_dssp             TCTTSCCEEEECSCHHHHHHHHHH--HHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhhEEEEeCCHHHHHHHHHH--HhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            8 7899999999 99999887643  34468889999999999999887433    46667788888888888764

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=98.89  E-value=2.7e-09  Score=92.81  Aligned_cols=130  Identities=13%  Similarity=0.098  Sum_probs=94.3

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcC--CCCCCchhccccccc-C
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQG--DDIIPDIVTVGKPMG-N  155 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g--~~v~pDi~~~~K~l~-~  155 (224)
                      ++.+|+++..+...|.+ .++++++++.++            ++++|.+.|........+.  .+....+.+++|.+| .
T Consensus       160 ~~~~v~l~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  238 (411)
T 2o0r_A          160 RTRALIINSPHNPTGAV-LSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCT  238 (411)
T ss_dssp             TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCT
T ss_pred             CceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCc
Confidence            67888888888888876 457788888777            8888877664112222221  013445668999998 7


Q ss_pred             CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         156 GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       156 G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+++|++++++++++.+...  ....||+.++++++++.++|+..++  +++.++++++.++|.+.|+++
T Consensus       239 G~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  306 (411)
T 2o0r_A          239 GWKIGWACGPAELIAGVRAA--KQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI  306 (411)
T ss_dssp             TTCEEEEECCHHHHHHHHHH--HHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEeeCHHHHHHHHHH--HhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            89999999999999887643  3345788889999999999986532  456777888888888888764

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=98.88  E-value=1.1e-08  Score=89.30  Aligned_cols=144  Identities=8%  Similarity=0.017  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcC---
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQG---  139 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g---  139 (224)
                      +++|++.++.....+.++.+|++.......|.+ .++++++++.++            ++++|++.|..+.....+.   
T Consensus       172 ~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~  250 (428)
T 1iay_A          172 SKAVKEAYENAQKSNIKVKGLILTNPSNPLGTT-LDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQ  250 (428)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSG
T ss_pred             HHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCc-CCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccc
Confidence            455666554321233467777776656667875 477888888877            7777655553111222221   


Q ss_pred             --CCCCCc----hhccccccc-CCccccccee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh---h--hhHH
Q psy6205         140 --DDIIPD----IVTVGKPMG-NGHPVAAVIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE---T--ENLR  206 (224)
Q Consensus       140 --~~v~pD----i~~~~K~l~-~G~p~~av~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~---~--~~l~  206 (224)
                        .++.+|    +.+++|.+| .|+++|++++ ++++++.+..    ...+++.|+++++++.++|+..+   +  +++.
T Consensus       251 ~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~  326 (428)
T 1iay_A          251 EMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARK----MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESA  326 (428)
T ss_dssp             GGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHH----HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHH----HHhcccCCHHHHHHHHHHhcChHHHHHHHHHHH
Confidence              013488    568999998 7899999999 7888887753    23457789999999998887532   2  4577


Q ss_pred             HHHHHHHHHHHHhhhhc
Q psy6205         207 EHALDVGNQLHTPKKEN  223 (224)
Q Consensus       207 ~~~~~~g~~l~~~l~~l  223 (224)
                      +++++..++|.+.|+++
T Consensus       327 ~~~~~~~~~l~~~L~~~  343 (428)
T 1iay_A          327 MRLGKRHKHFTNGLEVV  343 (428)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            78888899999988764

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=98.88  E-value=4.9e-09  Score=90.26  Aligned_cols=129  Identities=11%  Similarity=0.096  Sum_probs=97.2

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccc---cchhhh-hcCCCCCCchhcccccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGT---HWWAFQ-LQGDDIIPDIVTVGKPM  153 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~---~~~~~~-~~g~~v~pDi~~~~K~l  153 (224)
                      +++.+|+++..+...|.+ .+++.++++.++            ++++|.+.|.   .++... .++  ....+.+++|.+
T Consensus       162 ~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~--~~i~~~s~sK~~  238 (386)
T 1u08_A          162 ERTRLVILNTPHNPSATV-WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRE--RAVAVSSFGKTY  238 (386)
T ss_dssp             TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHT--TEEEEEEHHHHT
T ss_pred             ccCEEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccC--cEEEEecchhhc
Confidence            467888888777778866 467788888887            7888766553   122322 344  566677899999


Q ss_pred             c-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         154 G-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       154 ~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      + .|+++|++++++++++.+...  ....+|+.++++++++.++|+..++  +++.++++++.++|.+.|+++
T Consensus       239 ~~~G~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  309 (386)
T 1u08_A          239 HMTGWKVGYCVAPAPISAEIRKV--HQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES  309 (386)
T ss_dssp             TCGGGCCEEEECCHHHHHHHHHH--HHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS
T ss_pred             CCcccceEEEEcCHHHHHHHHHH--HHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            8 689999999999999887643  3346888999999999999987532  467788888899999888764

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=98.87  E-value=1.7e-08  Score=87.25  Aligned_cols=139  Identities=13%  Similarity=0.179  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHccCC-CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HH-hC-CccccccchhhhhcCCCCC
Q psy6205          75 AQDVQDLIEAMGRNG-KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQ-VG-FGRVGTHWWAFQLQGDDII  143 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~-~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~-tG-~GrtG~~~~~~~~~g~~v~  143 (224)
                      .++|++.++.   .. +++++|++++++...|.+.+.++..+.+++.        ++ .| |++++. .+ .+.++  +.
T Consensus       159 ~~~l~~~l~~---~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~-~~-~~~~~--~~  231 (398)
T 3a2b_A          159 MEDLRAKLSR---LPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGA-GT-ASHFG--LN  231 (398)
T ss_dssp             HHHHHHHHHT---SCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGC-CH-HHHHT--CG
T ss_pred             HHHHHHHHHh---hccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCC-ch-HhhcC--CC
Confidence            3556666542   22 2688999999999889888766666666665        55 34 567775 33 45565  54


Q ss_pred             --Cchh--cccccccC-CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHH
Q psy6205         144 --PDIV--TVGKPMGN-GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLH  217 (224)
Q Consensus       144 --pDi~--~~~K~l~~-G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~  217 (224)
                        ||++  +++|.++. |   |.+++++++++.+......+..++..+|+.++++.++|+.++. +++.++++++.+++.
T Consensus       232 ~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~  308 (398)
T 3a2b_A          232 DDVDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAK  308 (398)
T ss_dssp             GGCSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHH
T ss_pred             cCCeEEEecccccccCCC---cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence              7888  89999983 3   6688999999888653223567778899999999999988754 478899999999999


Q ss_pred             Hhhhhc
Q psy6205         218 TPKKEN  223 (224)
Q Consensus       218 ~~l~~l  223 (224)
                      +.|+++
T Consensus       309 ~~L~~~  314 (398)
T 3a2b_A          309 AQLLDH  314 (398)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999875

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=98.87  E-value=5.8e-09  Score=90.73  Aligned_cols=131  Identities=14%  Similarity=0.089  Sum_probs=96.6

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCC--CCCCchhccccccc-
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGD--DIIPDIVTVGKPMG-  154 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~--~v~pDi~~~~K~l~-  154 (224)
                      .++.+|+++..+...|.+. +++.++++.++            ++++|.++|........+..  +...++.+++|.+| 
T Consensus       173 ~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~  251 (422)
T 3fvs_A          173 SRTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSA  251 (422)
T ss_dssp             TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTC
T ss_pred             CCceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCC
Confidence            3678888888888788766 67778887776            88888777752223333320  13344557899998 


Q ss_pred             CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH-------Hhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         155 NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV-------LET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 ~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~-------~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .|+++|++++++++++.+...  ....+|+.|+++++++.++|+.       .++  +++.++++++.++|.+.|+++
T Consensus       252 ~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  327 (422)
T 3fvs_A          252 TGWKVGWVLGPDHIMKHLRTV--HQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV  327 (422)
T ss_dssp             GGGCCEEEECCHHHHHHHHHH--HHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccceEEEEEeCHHHHHHHHHH--HhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            789999999999999887643  3456889999999999999985       221  356777888888888888765

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=98.86  E-value=8e-09  Score=89.84  Aligned_cols=130  Identities=13%  Similarity=0.124  Sum_probs=90.8

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcC--CCCCCchhccccccc-C
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQG--DDIIPDIVTVGKPMG-N  155 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g--~~v~pDi~~~~K~l~-~  155 (224)
                      ++.+|++.-.+...|.+ .+.++++++.++            ++++|.++|+.......+.  .+....+.+++|.+| .
T Consensus       172 ~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~  250 (412)
T 2x5d_A          172 KPRMMILGFPSNPTAQC-VELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMA  250 (412)
T ss_dssp             CCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCT
T ss_pred             CceEEEECCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCc
Confidence            56667664335556765 466788887776            8888866663111222221  013444668999998 7


Q ss_pred             CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         156 GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       156 G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+++|++++++++++.+...  ....|++.|+++++++.++|+..++  +++.++++++.++|.+.|+++
T Consensus       251 G~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  318 (412)
T 2x5d_A          251 GWRIGFMVGNPELVSALARI--KSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA  318 (412)
T ss_dssp             TSCCEEEEECHHHHHHHHHH--HHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEcCHHHHHHHHHH--HhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            89999999999999988643  3446889999999999999986532  467777888888998888764

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=98.86  E-value=8.2e-09  Score=88.84  Aligned_cols=129  Identities=12%  Similarity=0.077  Sum_probs=93.6

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC-CCc--hhccccccc-
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI-IPD--IVTVGKPMG-  154 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v-~pD--i~~~~K~l~-  154 (224)
                      ++.+|+++..+...|.+ .+++.++++.++            ++++|.+.|........+. +. ..|  +.+++|.+| 
T Consensus       160 ~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~  237 (389)
T 1gd9_A          160 KTRALIINSPCNPTGAV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLD-GMFERTITVNGFSKTFAM  237 (389)
T ss_dssp             TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGST-TCGGGEEEEEESTTTTTC
T ss_pred             CceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhcc-CCCCCEEEEecChhhcCC
Confidence            56788887777767865 567788888877            7888866653122333331 11 245  447999998 


Q ss_pred             CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHhhhhc
Q psy6205         155 NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET----ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 ~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~----~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .|+++|++++++++++.+...  ....+++.|+++++++.++|+..++    +++.++++++.++|.+.|+++
T Consensus       238 ~G~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  308 (389)
T 1gd9_A          238 TGWRLGFVAAPSWIIERMVKF--QMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM  308 (389)
T ss_dssp             GGGCCEEEECCHHHHHHHHHH--HTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccceEEEEECHHHHHHHHHH--HhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence            689999999999999888643  3446788999999999999986544    456677888888888888764

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=98.85  E-value=3.4e-08  Score=85.16  Aligned_cols=137  Identities=14%  Similarity=0.174  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      ++++++.++.     +++.+|++..+....|.+ .|.++++++.++            +++  |  +. .+..+.++  +
T Consensus       124 ~~~l~~~i~~-----~~~~~v~~~~~~~~~G~~-~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~-~~~~~~~~--~  190 (379)
T 3ke3_A          124 IETAVAKIKE-----DKSAIVYAPHVETSSGII-LSEEYIKALSEAVHSVGGLLVIDCIAS--G--CV-WLDMKELG--I  190 (379)
T ss_dssp             HHHHHHHHHH-----HTCSEEEEESEETTTTEE-CCHHHHHHHHHHHHHTTCEEEEECTTC--T--TC-CCCHHHHT--C
T ss_pred             HHHHHHHHhh-----cCCcEEEEEeecCCCcee-CCHHHHHHHHHHHHHcCCEEEEEeccc--C--Cc-cccccccC--C
Confidence            4566666642     134566666666666654 457788888887            654  3  33 45677777  6


Q ss_pred             CCchhcccccccCCcccccceecHHHHHhhhcC-Cccc-------------------ccCCCCcHHHHHHHHHHHHHHhh
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQET-GVEY-------------------FNTYGGNPVSCAVANAVMEVLET  202 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~-~~~~-------------------~~T~~~~p~~~aaa~a~l~~~~~  202 (224)
                      ...+.+..|.|+++..+|++++++++++.+... ...+                   .++++.|+.++++..++|+++++
T Consensus       191 d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~  270 (379)
T 3ke3_A          191 DVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKE  270 (379)
T ss_dssp             SEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            555666779998876789999999998887642 1111                   12347788899999999999976


Q ss_pred             h---hHHHHHHHHHHHHHHhhhhcC
Q psy6205         203 E---NLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       203 ~---~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      +   ++.++.+++.++|++.|+++|
T Consensus       271 ~g~~~~~~~~~~l~~~l~~~l~~~g  295 (379)
T 3ke3_A          271 IGFDILRDAQWELGNRVRKVLTDKG  295 (379)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hcHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4   788889999999999998764

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=98.84  E-value=8.5e-09  Score=88.72  Aligned_cols=128  Identities=9%  Similarity=-0.046  Sum_probs=95.2

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCcccccc---chhhh--hcCCCCCCchhcccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTH---WWAFQ--LQGDDIIPDIVTVGKPM  153 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~---~~~~~--~~g~~v~pDi~~~~K~l  153 (224)
                      ++.+|+++..+...|.+. +++.++++.++            ++++|.+.|..   ++...  .++  ..+++.+++|.+
T Consensus       163 ~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~sK~~  239 (388)
T 1j32_A          163 KTKLLVFNTPSNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYE--RSVVCSGFAKTY  239 (388)
T ss_dssp             TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHH--TEEEEEESTTTT
T ss_pred             CceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccC--CEEEEeechhcc
Confidence            577888888777788765 56778877776            77777665531   12221  133  556777899999


Q ss_pred             c-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         154 G-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       154 ~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      | .|+++|++++++++++.+...  ...+|++.++++++++.++|+..++  +++.++++++.++|.+.|+++
T Consensus       240 ~~~G~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  310 (388)
T 1j32_A          240 AMTGWRVGFLAGPVPLVKAATKI--QGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM  310 (388)
T ss_dssp             TCTTTCCEEEECCHHHHHHHHHH--HHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCcccceEEEEeCHHHHHHHHHH--HhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            8 689999999999999887643  3346888999999999999975432  457778888999999998764

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=98.84  E-value=6.9e-09  Score=90.06  Aligned_cols=142  Identities=11%  Similarity=0.069  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCcccc---ccchhhhhcC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVG---THWWAFQLQG  139 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG---~~~~~~~~~g  139 (224)
                      +++|++.+..   ...+..++++...+...|. ..+.++++++.++            ++++|+++|   . ++....+.
T Consensus       170 ~~~l~~~l~~---~~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~-~~~~~~~~  244 (412)
T 1ajs_A          170 LQGFLSDLEN---APEFSIFVLHACAHNPTGT-DPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKD-AWAIRYFV  244 (412)
T ss_dssp             HHHHHHHHHH---SCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHH-THHHHHHH
T ss_pred             HHHHHHHHHh---CCCCcEEEEECCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcccccccCCccccc-chHHHHHh
Confidence            4556665543   2234455544433444564 5677888888776            778898876   3 34555442


Q ss_pred             CCCCCc----hhcccccccC-Cccccccee---cHHHHHhhhcCC-cccccCCC-CcHHHHHHHHHHHHHHh--------
Q psy6205         140 DDIIPD----IVTVGKPMGN-GHPVAAVIT---TKEIAKSFQETG-VEYFNTYG-GNPVSCAVANAVMEVLE--------  201 (224)
Q Consensus       140 ~~v~pD----i~~~~K~l~~-G~p~~av~~---~~~i~~~~~~~~-~~~~~T~~-~~p~~~aaa~a~l~~~~--------  201 (224)
                        ..+|    +.+++|.+|. |+++|++++   ++++++.+.... ..+..||. .|+++++++.++|+..+        
T Consensus       245 --~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~  322 (412)
T 1ajs_A          245 --SEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGN  322 (412)
T ss_dssp             --HTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             --ccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHH
Confidence              2355    5589999998 899999999   888555432210 11335666 49999999999998652        


Q ss_pred             hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         202 TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       202 ~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      -+++.++++++.++|.+.|+++
T Consensus       323 ~~~~~~~~~~~~~~l~~~L~~~  344 (412)
T 1ajs_A          323 VKTMADRILSMRSELRARLEAL  344 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            2567888899999999999875

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=98.81  E-value=7.1e-08  Score=83.41  Aligned_cols=145  Identities=12%  Similarity=0.065  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEcc-ccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCC-
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAES-LQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGD-  140 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Ep-v~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~-  140 (224)
                      +++|++.++.......++.+|++.| .+...|.+. +.++++++.++            ++++|.+.|........++. 
T Consensus       158 ~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  236 (407)
T 2zc0_A          158 VDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTM-SMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNE  236 (407)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSS
T ss_pred             HHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCC
Confidence            4556655542110123677775444 566688765 56777777766            78887666642223333320 


Q ss_pred             CCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH--h---hhhHHHHHHHHHHH
Q psy6205         141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL--E---TENLREHALDVGNQ  215 (224)
Q Consensus       141 ~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~--~---~~~l~~~~~~~g~~  215 (224)
                      +...++.+++|.++.|+++|++++++++++.+...  ....+++.++++++++.+.|+..  +   -+...++++++.++
T Consensus       237 ~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  314 (407)
T 2zc0_A          237 GRVIVAGTLSKVLGTGFRIGWIIAEGEILKKVLMQ--KQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDI  314 (407)
T ss_dssp             CCEEEEEESTTTTCTTSCCEEEECCHHHHHHHHHH--HTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHH
T ss_pred             CCEEEEcccccccCCCcceEEEecCHHHHHHHHHH--HHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence            12345668999999889999999999999888643  33467788999999999999864  2   23567778888888


Q ss_pred             HHHhhhh
Q psy6205         216 LHTPKKE  222 (224)
Q Consensus       216 l~~~l~~  222 (224)
                      |.+.|++
T Consensus       315 l~~~L~~  321 (407)
T 2zc0_A          315 MLKALEN  321 (407)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888865

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=98.80  E-value=7.2e-09  Score=88.70  Aligned_cols=128  Identities=15%  Similarity=0.085  Sum_probs=93.7

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCC-CCc--hhccccccc-CCcc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDI-IPD--IVTVGKPMG-NGHP  158 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v-~pD--i~~~~K~l~-~G~p  158 (224)
                      ++.+|+++..+...|.+.+.+ ..+.+++.        ++++|.+.|. ......+. +. ..|  +.+++|.+| .|++
T Consensus       154 ~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~-~~~~~~~~-~~~~~~i~~~s~sK~~~~~G~r  230 (370)
T 2z61_A          154 KTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGK-CYSAIEFD-ENLEKTILINGFSKLYAMTGWR  230 (370)
T ss_dssp             SEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSC-CCCGGGTC-TTCSSEEEEEESTTTTTCGGGC
T ss_pred             CceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCC-CcCHHHcc-CCCCcEEEEecChhccCCccce
Confidence            677888887777788888777 55666665        7888766664 33333331 01 124  447899998 7899


Q ss_pred             cccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH-Hhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         159 VAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV-LET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       159 ~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~-~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|++++++++++.+...  ....|++.|+++++++.++|+. .++  +++.++++++.++|.+.|+++
T Consensus       231 ~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  296 (370)
T 2z61_A          231 IGYVISNDEIIEAILKL--QQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF  296 (370)
T ss_dssp             CEEEECCHHHHHHHHHH--HHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEECHHHHHHHHHH--HhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999888643  3446788999999999999976 322  457778888999999988764

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=98.80  E-value=4.2e-08  Score=84.03  Aligned_cols=137  Identities=12%  Similarity=0.054  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH---------HHhCCccccccchhh-hhcCCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH---------VQVGFGRVGTHWWAF-QLQGDDIIP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~---------v~tG~GrtG~~~~~~-~~~g~~v~p  144 (224)
                      +++|++.++.     .++++|+++..+...|.+. +.+.++++.+.         ++++|++... .+.. +.++ ...+
T Consensus       153 ~~~l~~~i~~-----~~~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-~~~i  224 (369)
T 3cq5_A          153 MDVALEEIRA-----KQPDIVFVTTPNNPTGDVT-SLDDVERIINVAPGIVIVDEAYAEFSPSPS-ATTLLEKYP-TKLV  224 (369)
T ss_dssp             HHHHHHHHHH-----HCCSEEEEESSCTTTCCCC-CHHHHHHHHHHCSSEEEEECTTGGGCCSCC-GGGGTTTCT-TTEE
T ss_pred             HHHHHHHhhc-----cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCEEEEECCchhhcCCcc-hHHHHhhCC-CCEE
Confidence            4556655542     1567899988888888766 56677666666         7777765432 2222 2221 0335


Q ss_pred             chhccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhh
Q psy6205         145 DIVTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       145 Di~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ++.+++|.+| .|+++|++++++++.+.+...    ..+|+.|+++++++.++|+..+ -++..++++++.++|.+.|++
T Consensus       225 ~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~  300 (369)
T 3cq5_A          225 VSRTMSKAFDFAGGRLGYFVANPAFIDAVMLV----RLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEE  300 (369)
T ss_dssp             EEEESSSTTSCGGGCCEEEEECTHHHHHHHTT----SCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEechHhcCCcccceEEEEeCHHHHHHHHHc----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6778999998 789999999999999888643    2467799999999999998643 246777888888888888875


Q ss_pred             c
Q psy6205         223 N  223 (224)
Q Consensus       223 l  223 (224)
                      .
T Consensus       301 ~  301 (369)
T 3cq5_A          301 L  301 (369)
T ss_dssp             H
T ss_pred             C
Confidence            3

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=98.77  E-value=3.3e-08  Score=85.10  Aligned_cols=136  Identities=8%  Similarity=-0.004  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      +++|++.++     ..++.+|++...+...|.+. ++++++++.++            ++++|.++|..+.....    +
T Consensus       151 ~~~l~~~l~-----~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~----~  220 (390)
T 1d2f_A          151 MGKLEAVLA-----KPECKIMLLCSPQNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSN----V  220 (390)
T ss_dssp             HHHHHHHHT-----STTEEEEEEESSCTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGG----T
T ss_pred             HHHHHHHhc-----cCCCeEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHH----c
Confidence            345555443     12567777654466678764 55677777776            88888777752212222    3


Q ss_pred             CC---c-hhccccccc-CCcccccceec-HHHHHhhhcCCccc-ccCC-CCcHHHHHHHHHHHHHHhh--hhHHHHHHHH
Q psy6205         143 IP---D-IVTVGKPMG-NGHPVAAVITT-KEIAKSFQETGVEY-FNTY-GGNPVSCAVANAVMEVLET--ENLREHALDV  212 (224)
Q Consensus       143 ~p---D-i~~~~K~l~-~G~p~~av~~~-~~i~~~~~~~~~~~-~~T~-~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~  212 (224)
                      .+   | +.+++|.+| +|+++|+++++ +++++.+...  .. .+|| +.|+++++++.++|+..++  ++..++++++
T Consensus       221 ~~~~~d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~  298 (390)
T 1d2f_A          221 ARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSA--LKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDN  298 (390)
T ss_dssp             CCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHH--HHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             chhhHhhccCccHhhcccChhheEEEECCHHHHHHHHHH--HhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            23   3 889999998 78999999985 7888877543  23 4566 7899999999999986322  3456667778


Q ss_pred             HHHHHHhhhh
Q psy6205         213 GNQLHTPKKE  222 (224)
Q Consensus       213 g~~l~~~l~~  222 (224)
                      .++|.+.|++
T Consensus       299 ~~~l~~~L~~  308 (390)
T 1d2f_A          299 LTYIADKMNA  308 (390)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888888865

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=98.76  E-value=9.6e-08  Score=81.73  Aligned_cols=136  Identities=15%  Similarity=0.152  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +++|++.++.     +++.+|++++.+...|.+.+.++..+.+++.        +++ +|  +. .+..+.++    +|+
T Consensus       137 ~~~l~~~i~~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~-~g--~~-~~~~~~~~----~d~  203 (393)
T 3kgw_A          137 LQEVEEGLAQ-----HKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVAS-LG--GV-PIYMDQQG----IDI  203 (393)
T ss_dssp             HHHHHHHHHH-----HCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTT-TT--TS-CCCTTTTT----CCE
T ss_pred             HHHHHHHHhh-----CCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCcc-cc--Cc-ccchhhcC----CCE
Confidence            4566666652     2678999999999999988877777777776        433 22  11 22333333    688


Q ss_pred             hccc--ccccCCcccccceecHHHHHhhhcCCc---------------------ccccCCCCcHHHHHHHHHHHHHHhh-
Q psy6205         147 VTVG--KPMGNGHPVAAVITTKEIAKSFQETGV---------------------EYFNTYGGNPVSCAVANAVMEVLET-  202 (224)
Q Consensus       147 ~~~~--K~l~~G~p~~av~~~~~i~~~~~~~~~---------------------~~~~T~~~~p~~~aaa~a~l~~~~~-  202 (224)
                      ++++  |.++|+.++|++++++++++.+.....                     ....+++.|+.+++++.++++.+++ 
T Consensus       204 ~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~  283 (393)
T 3kgw_A          204 MYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQ  283 (393)
T ss_dssp             EEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            7766  999887789999999999988764210                     0123566789999999999998865 


Q ss_pred             --hhHHHHHHHHHHHHHHhhhhc
Q psy6205         203 --ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       203 --~~l~~~~~~~g~~l~~~l~~l  223 (224)
                        +++.++++++.++|.+.|+++
T Consensus       284 ~~~~~~~~~~~~~~~l~~~L~~~  306 (393)
T 3kgw_A          284 GLENCWRRHREATAHLHKHLQEM  306 (393)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHc
Confidence              577889999999999999875

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=98.76  E-value=2.8e-08  Score=84.66  Aligned_cols=124  Identities=12%  Similarity=0.039  Sum_probs=90.5

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH-----------HHhCCccccccchhhhhcCCCCCCc----hhccccccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH-----------VQVGFGRVGTHWWAFQLQGDDIIPD----IVTVGKPMG  154 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----------v~tG~GrtG~~~~~~~~~g~~v~pD----i~~~~K~l~  154 (224)
                      +++.+|+++..+...|.+.+.+ .+.++.+.           ++++|++ |+ +.......  ..+|    +.+++|.+|
T Consensus       154 ~~~~~v~~~~p~nptG~~~~~~-~l~~l~~~~~~~~~li~De~~~~~~~-~~-~~~~~~~~--~~~~~~i~~~s~sK~~g  228 (363)
T 3ffh_A          154 EKTTIVWICNPNNPTGNYIELA-DIQAFLDRVPSDVLVVLDEAYIEYVT-PQ-PEKHEKLV--RTYKNLIITRTFSKIYG  228 (363)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHH-HHHHHHTTSCTTSEEEEECTTGGGCS-SC-CCCCGGGG--GTCTTEEEEEESSSTTC
T ss_pred             cCCCEEEEeCCCCCcCCCcCHH-HHHHHHHhCCCCcEEEEeCchHhhcC-cc-ccCHHHHh--hcCCCEEEEeechhhhc
Confidence            3578888887788888876554 45555443           7888877 64 33433332  3455    567999998


Q ss_pred             -CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhhh
Q psy6205         155 -NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       155 -~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~l~~  222 (224)
                       .|+++|++++++++.+.+...    ..+|+.|+++++++.++|+..+. ++..++.+++.++|.+.|++
T Consensus       229 ~~G~r~G~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~  294 (363)
T 3ffh_A          229 LASARVGYGIADKEIIRQLNIV----RPPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKR  294 (363)
T ss_dssp             CSSCCCEEEEECHHHHHHHHHT----CCSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhceeeeecCHHHHHHHHHh----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             789999999999999988753    24889999999999999974321 35667777888888888876

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=98.75  E-value=9.6e-09  Score=88.74  Aligned_cols=140  Identities=9%  Similarity=0.125  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcC---
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQG---  139 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g---  139 (224)
                      +++|++.+.    .  +..+|++...+...|.+. +++.++++.++            ++++|.++|+.+.....++   
T Consensus       169 ~~~l~~~l~----~--~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~  241 (407)
T 3nra_A          169 LTGLEEAFK----A--GARVFLFSNPNNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVD  241 (407)
T ss_dssp             HHHHHHHHH----T--TCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSC
T ss_pred             HHHHHHHHh----h--CCcEEEEcCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCccc
Confidence            455666554    1  344555554467778655 56667777766            8888877775222333221   


Q ss_pred             CCCCCchhccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHH
Q psy6205         140 DDIIPDIVTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQL  216 (224)
Q Consensus       140 ~~v~pDi~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l  216 (224)
                      .+...++.+++|.+| .|+++|++++++++++.+...  ....+++.++++++++.++|+..+  -++..++.+++.++|
T Consensus       242 ~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l  319 (407)
T 3nra_A          242 AENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKL--QAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDEL  319 (407)
T ss_dssp             GGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHH--HHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHH--HhhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            013355668999999 789999999999999988653  345678889999988888776321  134566777788888


Q ss_pred             HHhhhhc
Q psy6205         217 HTPKKEN  223 (224)
Q Consensus       217 ~~~l~~l  223 (224)
                      .+.|+++
T Consensus       320 ~~~L~~~  326 (407)
T 3nra_A          320 LHVLRGC  326 (407)
T ss_dssp             HHHHHTS
T ss_pred             HHHHhcC
Confidence            8888764

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=98.73  E-value=5e-08  Score=84.17  Aligned_cols=140  Identities=11%  Similarity=0.059  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcC---
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQG---  139 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g---  139 (224)
                      +++|++.++     ..++.+|++...+...|.+ .++++++++.++            ++++|+++|........+.   
T Consensus       153 ~~~l~~~l~-----~~~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~  226 (399)
T 1c7n_A          153 FQKLEKLSK-----DKNNKALLFCSPHNPVGRV-WKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQL  226 (399)
T ss_dssp             HHHHHHHHT-----CTTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHH
T ss_pred             HHHHHHHhc-----cCCCcEEEEcCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccc
Confidence            445555443     1356778776566667865 567788888887            8888877764222232221   


Q ss_pred             CCCCCchhccccccc-CCcccccceec-HHHHHhhhcCCcccccCC-CCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHH
Q psy6205         140 DDIIPDIVTVGKPMG-NGHPVAAVITT-KEIAKSFQETGVEYFNTY-GGNPVSCAVANAVMEVLET--ENLREHALDVGN  214 (224)
Q Consensus       140 ~~v~pDi~~~~K~l~-~G~p~~av~~~-~~i~~~~~~~~~~~~~T~-~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~  214 (224)
                      .+...++.+++|.+| .|+++|+++++ +++++.+...  ....++ +.|+++++++.++|+..++  +...++++++.+
T Consensus       227 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~  304 (399)
T 1c7n_A          227 ADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKS--RDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQR  304 (399)
T ss_dssp             HTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHH--HHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             cCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHH--HhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence            013344568999999 78999999997 6788887643  223344 6799999999999976321  345666777888


Q ss_pred             HHHHhhhh
Q psy6205         215 QLHTPKKE  222 (224)
Q Consensus       215 ~l~~~l~~  222 (224)
                      ++.+.|++
T Consensus       305 ~l~~~L~~  312 (399)
T 1c7n_A          305 IVKDFFEV  312 (399)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88888765

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=98.73  E-value=2.1e-08  Score=86.04  Aligned_cols=129  Identities=11%  Similarity=-0.011  Sum_probs=90.0

Q ss_pred             ceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCC---CCCCchhccccccc-C
Q psy6205          92 PCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGD---DIIPDIVTVGKPMG-N  155 (224)
Q Consensus        92 iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~---~v~pDi~~~~K~l~-~  155 (224)
                      +.+|+++..+...|.+. +++.++++.++            ++++|.++|+.......+..   +....+.+++|.+| +
T Consensus       165 ~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~  243 (391)
T 4dq6_A          165 VKLFILCNPHNPVGRVW-TKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIA  243 (391)
T ss_dssp             EEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCG
T ss_pred             CCEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCc
Confidence            66777776677788754 55567887776            88888877752222222210   02233558999998 7


Q ss_pred             CcccccceecH-HHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhh
Q psy6205         156 GHPVAAVITTK-EIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       156 G~p~~av~~~~-~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      |+++|++++++ ++++.+... .....+++.|+++++++.++|+..+  -++..++++++.+++.+.|++
T Consensus       244 G~r~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~  312 (391)
T 4dq6_A          244 GLQSSYVVLPDEKDYKLLDDA-FTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINE  312 (391)
T ss_dssp             GGCCEEEECCSHHHHHHHHHH-HHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEeCCHHHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999875 888877643 1234577899999999999998743  245677778888888888865

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.71  E-value=1.9e-08  Score=86.87  Aligned_cols=127  Identities=15%  Similarity=0.089  Sum_probs=92.3

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCC-CCCc--hhccccccc-
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDD-IIPD--IVTVGKPMG-  154 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~-v~pD--i~~~~K~l~-  154 (224)
                      ++.+|+++..+...|.+ .+++.++++.++            ++++|...|. ......+. + -..|  +.+++|.+| 
T Consensus       174 ~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~-~~~~~~~~-~~~~~~i~~~s~sK~~~~  250 (389)
T 1o4s_A          174 KTKAVLINSPNNPTGVV-YRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE-FTSILDVS-EGFDRIVYINGFSKSHSM  250 (389)
T ss_dssp             TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSC-CCCHHHHC-SSSTTEEEEEESTTTTTC
T ss_pred             CceEEEEcCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCCHhhcC-CCCCcEEEEeechhhcCC
Confidence            57788888777777875 456777777776            7777766553 23333332 0 1134  457899998 


Q ss_pred             CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         155 NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 ~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .|+++|++++++++++.+...  ....|++.++++++++.++|+.. .+++.++++++.+++.+.|+++
T Consensus       251 ~G~r~G~l~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~  316 (389)
T 1o4s_A          251 TGWRVGYLISSEKVATAVSKI--QSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM  316 (389)
T ss_dssp             GGGCCEEEECCHHHHHHHHHH--HHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccceEEEEeCHHHHHHHHHH--hhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc
Confidence            689999999999999887643  33457888999999888887643 4567888899999999988764

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=98.71  E-value=1.7e-08  Score=87.74  Aligned_cols=128  Identities=10%  Similarity=0.091  Sum_probs=91.6

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCcccccc--chhhh-hcCCCCCCchhccccccc-
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTH--WWAFQ-LQGDDIIPDIVTVGKPMG-  154 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~--~~~~~-~~g~~v~pDi~~~~K~l~-  154 (224)
                      ++.+|+++..+...|.+ .++++++++.++            ++++|.++|..  ++... ..+  ....+.+++|.+| 
T Consensus       181 ~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~--~~i~~~s~sK~~g~  257 (404)
T 2o1b_A          181 KTKLIYLTYPNNPTGST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKD--VAIEIYSLSKGYNM  257 (404)
T ss_dssp             HEEEEEECSSCTTTCCC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHH--HEEEEEESTTTTTC
T ss_pred             CceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCC--CEEEEEecchhccC
Confidence            46778887545557765 567888888887            78887655531  22221 122  3345668999998 


Q ss_pred             CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         155 NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 ~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .|+++|++++++++++.+...  ....+++.|+++++++.++|+..++  ++..++++++.++|.+.|+++
T Consensus       258 ~G~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  326 (404)
T 2o1b_A          258 SGFRVGFAVGNKDMIQALKKY--QTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA  326 (404)
T ss_dssp             GGGCCEEEEECHHHHHHHHHH--HHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chhheEeEecCHHHHHHHHHH--HhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            789999999999999888643  3346788999999999999987422  345666778888888888764

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=98.70  E-value=1.2e-07  Score=82.80  Aligned_cols=128  Identities=8%  Similarity=0.083  Sum_probs=85.8

Q ss_pred             CCceEEEEccc-cCCCCcccCCHHHHHHHHHH------------HHhCCcccccc---chhhhhcCCCCCCchhcccccc
Q psy6205          90 KRPCAFFAESL-QSCGGQIIPPANYLREVYKH------------VQVGFGRVGTH---WWAFQLQGDDIIPDIVTVGKPM  153 (224)
Q Consensus        90 ~~iaavi~Epv-~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~---~~~~~~~g~~v~pDi~~~~K~l  153 (224)
                      .++.+|++.|. +...|.+ .+.+.++++.++            ++++|...|..   +......+  ....+.+++|.+
T Consensus       189 ~~~~~v~~~~~~~NPtG~~-~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~--~~i~~~s~SK~~  265 (425)
T 2r2n_A          189 NTPKFLYTVPNGNNPTGNS-LTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDG--RVIRADSFSKII  265 (425)
T ss_dssp             CCCSEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTS--CEEEEEESTTTT
T ss_pred             CCceEEEECCCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCC--CEEEEccchhhc
Confidence            35778888875 4447765 566777777766            77766555531   22222222  334566899999


Q ss_pred             cCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHhhhh
Q psy6205         154 GNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETEN-------LREHALDVGNQLHTPKKE  222 (224)
Q Consensus       154 ~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~-------l~~~~~~~g~~l~~~l~~  222 (224)
                      +.|+++|++++++++++.+...  ....+++.|+++++++.++|+.+.+++       +.++.++.-++|.+.|++
T Consensus       266 ~~GlRiG~~~~~~~l~~~l~~~--~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  339 (425)
T 2r2n_A          266 SSGLRIGFLTGPKPLIERVILH--IQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADK  339 (425)
T ss_dssp             CSTTCCEEEEEEHHHHHHHHHH--HHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccceEEEecCHHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9889999999999999888643  334678899999999999998754322       334445555556566554

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.70  E-value=4.8e-08  Score=85.39  Aligned_cols=145  Identities=10%  Similarity=0.053  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHcc--CCCCceEEEEcc-ccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcC
Q psy6205          75 AQDVQDLIEAMGR--NGKRPCAFFAES-LQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQG  139 (224)
Q Consensus        75 ~~~l~~~~~~~~~--~~~~iaavi~Ep-v~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g  139 (224)
                      +++|++.++....  ++.++.+|++.| .+...|.+ .+.++++++.++            ++++|.+.|........++
T Consensus       169 ~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  247 (425)
T 1vp4_A          169 LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVT-TSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG  247 (425)
T ss_dssp             HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH
T ss_pred             HHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhC
Confidence            4556665543110  123677775555 44446765 467788877776            7888866664222333332


Q ss_pred             C-CCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH--hh--hhHHHHHHHHHH
Q psy6205         140 D-DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL--ET--ENLREHALDVGN  214 (224)
Q Consensus       140 ~-~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~--~~--~~l~~~~~~~g~  214 (224)
                      . +....+.+++|.++.|+++|++++++++++.+...  ....|++.|+++++++.++|+..  ++  +...+++++..+
T Consensus       248 ~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~  325 (425)
T 1vp4_A          248 GPERVVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQA--KQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRT  325 (425)
T ss_dssp             CTTTEEEEEESTTTTCGGGCEEEEECCHHHHHHHHHH--HHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHH
T ss_pred             CCCCEEEEeccccccccccceEEEeeCHHHHHHHHHH--hhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            0 02223558999999889999999999999888643  23456778999999999999874  22  356666778888


Q ss_pred             HHHHhhhh
Q psy6205         215 QLHTPKKE  222 (224)
Q Consensus       215 ~l~~~l~~  222 (224)
                      +|.+.|++
T Consensus       326 ~l~~~L~~  333 (425)
T 1vp4_A          326 VMLNALEE  333 (425)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888875

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=98.69  E-value=4.6e-08  Score=83.29  Aligned_cols=139  Identities=9%  Similarity=0.085  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +++|++.++....+ +++++|++++.+...|.+.+.++..+.+++.        +++. |..+   +....++    +|+
T Consensus       132 ~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~-~~~~---~~~~~~~----~di  202 (371)
T 2e7j_A          132 PENFAQTIEETKKR-GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAI-GRMP---VSLKEIG----ADF  202 (371)
T ss_dssp             HHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTB-TTBC---CCHHHHT----CSE
T ss_pred             HHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECcccc-CCCC---CChhhcC----CCE
Confidence            45666666542111 4688999999999999888866666666665        4443 3332   1233344    677


Q ss_pred             hc--ccccccCCcccccceecHHHHHh-hhcCCccccc-----CCCCcHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHH
Q psy6205         147 VT--VGKPMGNGHPVAAVITTKEIAKS-FQETGVEYFN-----TYGGNPVSCAVANAVMEVLETENLREHA--LDVGNQL  216 (224)
Q Consensus       147 ~~--~~K~l~~G~p~~av~~~~~i~~~-~~~~~~~~~~-----T~~~~p~~~aaa~a~l~~~~~~~l~~~~--~~~g~~l  216 (224)
                      ++  ++|.++++.++|++++++++++. +......+..     +++.|+.+++++.++++.+++ ++.+++  +++.+++
T Consensus       203 ~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l  281 (371)
T 2e7j_A          203 IVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRF  281 (371)
T ss_dssp             EEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHH
T ss_pred             EEecCCcCCCCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            74  69999988899999999998877 6543111223     677899999999999999876 788888  8999999


Q ss_pred             HHhhhhc
Q psy6205         217 HTPKKEN  223 (224)
Q Consensus       217 ~~~l~~l  223 (224)
                      .+.|+++
T Consensus       282 ~~~L~~~  288 (371)
T 2e7j_A          282 AAEMEKL  288 (371)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9998764

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=98.69  E-value=7.3e-08  Score=84.39  Aligned_cols=127  Identities=7%  Similarity=0.026  Sum_probs=92.4

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchh---ccccccc-
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIV---TVGKPMG-  154 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~---~~~K~l~-  154 (224)
                      +..+|++...+...|.+. +++.++++.++            ++++|+++|..+.....++  ..++++   +++|.++ 
T Consensus       191 ~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~--~~~~vi~~~S~sK~~~~  267 (427)
T 3dyd_A          191 KTACLIVNNPSNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS--TDVPILSCGGLAKRWLV  267 (427)
T ss_dssp             TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGC--SSCCEEEEEESTTTSSC
T ss_pred             CCCEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhC--CCCcEEEEeeccccCCC
Confidence            345555555577788754 66678888777            8899988886334555665  566677   8999976 


Q ss_pred             CCcccccceec-------HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhhhc
Q psy6205         155 NGHPVAAVITT-------KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 ~G~p~~av~~~-------~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .|+++|+++++       +++.+.+...   ...|++.|+++++++.++|+...+   ++..++++++.+++.+.|+++
T Consensus       268 ~G~riG~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  343 (427)
T 3dyd_A          268 PGWRLGWILIHDRRDIFGNEIRDGLVKL---SQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAI  343 (427)
T ss_dssp             GGGCCEEEEEECSTTSSHHHHHHHHHHH---HHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCcceEEEEecCcchhhHHHHHHHHHHH---HhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            57999999997       5787776532   224788999999999999986432   356667778888888888764

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=98.67  E-value=3.1e-07  Score=78.89  Aligned_cols=136  Identities=10%  Similarity=0.053  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +++|++.++.   .  ++.+|++++.+...|.+.+.++..+.+++.        +++ ||....   ...  .  ..+|+
T Consensus       148 ~~~l~~~l~~---~--~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~-~g~~~~---~~~--~--~~~di  214 (393)
T 1vjo_A          148 LEELRTALET---H--RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTS-LGGVPI---FLD--A--WGVDL  214 (393)
T ss_dssp             HHHHHHHHHH---H--CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTT-TTTSCC---CTT--T--TTCSE
T ss_pred             HHHHHHHHhh---C--CceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCcc-ccCcCC---ccc--c--cCccE
Confidence            4566666642   1  567899999999899988888888888887        555 654321   121  2  45899


Q ss_pred             hccc--ccccCCcccccceecHHHHHhhhcC-----Cccc------------ccCC-CCcHHHHHHHHHHHHHHhh---h
Q psy6205         147 VTVG--KPMGNGHPVAAVITTKEIAKSFQET-----GVEY------------FNTY-GGNPVSCAVANAVMEVLET---E  203 (224)
Q Consensus       147 ~~~~--K~l~~G~p~~av~~~~~i~~~~~~~-----~~~~------------~~T~-~~~p~~~aaa~a~l~~~~~---~  203 (224)
                      ++.+  |.++++.++|++++++++++.+...     ...+            ..++ +.|+++++++.++|+.+.+   +
T Consensus       215 ~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~  294 (393)
T 1vjo_A          215 AYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLA  294 (393)
T ss_dssp             EECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             EEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHH
Confidence            8766  9998766899999999999887431     1111            2344 7799999999999999854   4


Q ss_pred             hHHHHHHHHHHHHHHhhhhc
Q psy6205         204 NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       204 ~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++.++++++.+++.+.|+++
T Consensus       295 ~~~~~~~~~~~~l~~~L~~~  314 (393)
T 1vjo_A          295 NCWQRHQKNVEYLWERLEDI  314 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            68888999999999999865

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=98.67  E-value=1.5e-08  Score=86.82  Aligned_cols=129  Identities=9%  Similarity=0.081  Sum_probs=89.3

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcC-CCCCCchhccccccc-CC
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQG-DDIIPDIVTVGKPMG-NG  156 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g-~~v~pDi~~~~K~l~-~G  156 (224)
                      ++.+|+++..+...|.+ .+.++++++.++            ++++|.+.|+.....+..+ .+...++.+++|.+| .|
T Consensus       158 ~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G  236 (376)
T 2dou_A          158 EAKVLLLNYPNNPTGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAG  236 (376)
T ss_dssp             HEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGG
T ss_pred             CceEEEECCCCCCcCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChh
Confidence            45677776446667766 467788877776            7887766653111122211 013445668999998 78


Q ss_pred             cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhh
Q psy6205         157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +++|++++++++++.+...  ....+++.|+++++++.++|+..++  +...++++++.++|.+.|++
T Consensus       237 ~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~  302 (376)
T 2dou_A          237 FRLGFALGSEEALARLERV--KGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKG  302 (376)
T ss_dssp             GCCEEEEECHHHHHHHHHH--HHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             heeEEEecCHHHHHHHHHH--HHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988643  3446778899999999999876421  34566677888888888765

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=98.66  E-value=1.1e-07  Score=83.97  Aligned_cols=143  Identities=11%  Similarity=0.086  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCC-CCcccCCHHHHHHHHHH------------HHhCCcccccc---chhhhhc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSC-GGQIIPPANYLREVYKH------------VQVGFGRVGTH---WWAFQLQ  138 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~-~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~---~~~~~~~  138 (224)
                      +++|++.++.......++.+|++.|...+ .|.+ .+.+.++++.++            ++++|...|..   ++..+..
T Consensus       200 ~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~-~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~  278 (448)
T 3aow_A          200 VEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVT-MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNE  278 (448)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTT
T ss_pred             HHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCC-CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCC
Confidence            45566555411001136788877775444 6765 567777777777            77777555531   2233333


Q ss_pred             CCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH--hh--hhHHHHHHHHHH
Q psy6205         139 GDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL--ET--ENLREHALDVGN  214 (224)
Q Consensus       139 g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~--~~--~~l~~~~~~~g~  214 (224)
                      +  ...++.+++|.++.|+++|++++++++++.+...  ....|++.|+++++++.++|+..  ++  +.+.++.++..+
T Consensus       279 ~--~vi~~~S~SK~~~~GlriG~v~~~~~l~~~l~~~--~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~  354 (448)
T 3aow_A          279 G--RVIYLGTFSKILAPGFRIGWMVGDPGIIRKMEIA--KQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRD  354 (448)
T ss_dssp             S--CEEEEEESTTTTCGGGCCEEEEECHHHHHHHHHH--HHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             C--CEEEEccchhhccccccEEEEEeCHHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            3  5567889999999889999999999999988643  23356778999999999988753  11  234555567777


Q ss_pred             HHHHhhhh
Q psy6205         215 QLHTPKKE  222 (224)
Q Consensus       215 ~l~~~l~~  222 (224)
                      ++.+.|++
T Consensus       355 ~l~~~L~~  362 (448)
T 3aow_A          355 AMLEALEE  362 (448)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777765

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=98.64  E-value=1.2e-07  Score=80.89  Aligned_cols=125  Identities=12%  Similarity=0.112  Sum_probs=88.6

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-----------HHhCCccccccchhh-hhcCCCCCCchhccccccc-CCc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-----------VQVGFGRVGTHWWAF-QLQGDDIIPDIVTVGKPMG-NGH  157 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----------v~tG~GrtG~~~~~~-~~~g~~v~pDi~~~~K~l~-~G~  157 (224)
                      ++.+|++...+...|.+. +.+.++++.++           ++++|++... ++.. +.++  ....+.+++|.+| .|+
T Consensus       146 ~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~--~~i~~~s~sK~~g~~G~  221 (356)
T 1fg7_A          146 GVKVVYVCSPNNPTGQLI-NPQDFRTLLELTRGKAIVVADEAYIEFCPQAS-LAGWLAEYP--HLAILRTLSKAFALAGL  221 (356)
T ss_dssp             TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTTTCEEEEECTTGGGSGGGC-SGGGTTTCT--TEEEEEESSSTTCCGGG
T ss_pred             CCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCCEEEEEccchhhcCCCc-HHHHHhhCC--CEEEEecchHhhcCchh
Confidence            566777776677778665 56666666554           7777764332 3332 2233  3344668999998 789


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE---TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~---~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++|++++++++.+.+...    ..+|+.|+++++++.++|+...   -++..+++++..++|.+.|+++
T Consensus       222 r~G~~~~~~~~~~~l~~~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  286 (356)
T 1fg7_A          222 RCGFTLANEEVINLLMKV----IAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI  286 (356)
T ss_dssp             CCEEEEECHHHHHHHHHH----SCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hhEEEEeCHHHHHHHHHh----cCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999888642    3466899999999999987643   2456677788888888888765

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=98.64  E-value=9.5e-08  Score=82.52  Aligned_cols=140  Identities=9%  Similarity=0.067  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHccCCCCceEEE-EccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCC-
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFF-AESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGD-  140 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi-~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~-  140 (224)
                      +++|++.++.     .++.+|+ +...+...|.+ .+.++++++.++            ++++|.++|........++. 
T Consensus       151 ~~~l~~~l~~-----~~~~~v~~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~  224 (397)
T 2zyj_A          151 LDALEEVLKR-----ERPRFLYLIPSFQNPTGGL-TPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELARE  224 (397)
T ss_dssp             HHHHHHHHHH-----CCCSCEEECCBSCTTTCCB-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHH
T ss_pred             HHHHHHHHhh-----cCCeEEEECCCCcCCCCCc-CCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcc
Confidence            4556665542     2456764 44456667765 466777777776            78888776642223333320 


Q ss_pred             ---CCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh---hhhHHHHHHHHHH
Q psy6205         141 ---DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE---TENLREHALDVGN  214 (224)
Q Consensus       141 ---~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~---~~~l~~~~~~~g~  214 (224)
                         +....+.+++|.++.|+++|++++++++.+.+...  ....+++.|+++++++.++|+...   -+.+.+++++..+
T Consensus       225 ~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~  302 (397)
T 2zyj_A          225 AGYPGVIYLGSFSKVLSPGLRVAFAVAHPEALQKLVQA--KQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQ  302 (397)
T ss_dssp             HTCCCEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHH--HHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEecccccccccceeEEEecCHHHHHHHHHH--HHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence               02233557999999889999999999999888643  334567779999999988887532   1244555666777


Q ss_pred             HHHHhhhh
Q psy6205         215 QLHTPKKE  222 (224)
Q Consensus       215 ~l~~~l~~  222 (224)
                      +|.+.|++
T Consensus       303 ~l~~~L~~  310 (397)
T 2zyj_A          303 AMLHALDR  310 (397)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777764

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=98.62  E-value=9.4e-08  Score=82.29  Aligned_cols=128  Identities=9%  Similarity=-0.024  Sum_probs=88.6

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhccccccc-CCc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMG-NGH  157 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~-~G~  157 (224)
                      ++.+|+++..+...|.+.+ ++.++++.++            ++++|.++|. ......+. +....+.+++|.+| .|+
T Consensus       161 ~~~~v~i~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~-~~~i~~~s~sK~~g~~G~  237 (391)
T 3h14_A          161 DLAGLMVASPANPTGTMLD-HAAMGALIEAAQAQGASFISDEIYHGIEYEAK-AVTALELT-DECYVINSFSKYFSMTGW  237 (391)
T ss_dssp             CCSEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCGGGTC-SSSEEEEESSSTTCCTTS
T ss_pred             CCeEEEECCCCCCCCccCC-HHHHHHHHHHHHHcCCEEEEECcchhcccCCC-CcChhhcC-CCEEEEEechhccCCccc
Confidence            5678888877777887664 4557777666            8888877774 22222221 12233337899998 789


Q ss_pred             ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++|++++++++.+.+...  ....|++.|+++++++.++|+..+ -++..++.+++-++|.+.|+++
T Consensus       238 r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  302 (391)
T 3h14_A          238 RVGWMVVPEDQVRVVERI--AQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPKA  302 (391)
T ss_dssp             CCEEEECCGGGHHHHHHH--HHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEeCHHHHHHHHHH--HhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999888643  345788999999999999987211 1345566667777777777653

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=98.62  E-value=3.5e-08  Score=85.00  Aligned_cols=143  Identities=14%  Similarity=0.114  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCcccc--ccchhhhhcCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVG--THWWAFQLQGD  140 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG--~~~~~~~~~g~  140 (224)
                      ++++++.++   ..+.+.+++++...+...|. ..+.++++++.++            ++++|++.|  . .+....+. 
T Consensus       156 ~~~l~~~l~---~~~~~~~~~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~-  229 (394)
T 2ay1_A          156 FEGMKADLA---AAKKGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEED-AAGTRLIA-  229 (394)
T ss_dssp             HHHHHHHHH---TCCTTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHH-HHHHHHHH-
T ss_pred             HHHHHHHHH---hCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccc-hHHHHHHh-
Confidence            455665554   22234566666767776776 4567777777776            788887654  2 22333231 


Q ss_pred             CCCCchh---ccccccc-CCccccccee---cHHHHHhhhcCC-cccccCCCC-cHHHHHHHHHHHHHH------h--hh
Q psy6205         141 DIIPDIV---TVGKPMG-NGHPVAAVIT---TKEIAKSFQETG-VEYFNTYGG-NPVSCAVANAVMEVL------E--TE  203 (224)
Q Consensus       141 ~v~pDi~---~~~K~l~-~G~p~~av~~---~~~i~~~~~~~~-~~~~~T~~~-~p~~~aaa~a~l~~~------~--~~  203 (224)
                      ...+|++   +++|.+| .|+++|++++   ++++++.+.... .....+|.+ |+++++++.++|+..      +  -+
T Consensus       230 ~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~  309 (394)
T 2ay1_A          230 SRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELE  309 (394)
T ss_dssp             HHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             hcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHH
Confidence            0234533   7899999 7999999998   777655443210 012245554 899999999998754      1  24


Q ss_pred             hHHHHHHHHHHHHHHhhhhc
Q psy6205         204 NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       204 ~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++.++++++.++|.+.|+++
T Consensus       310 ~~~~~~~~~~~~l~~~L~~~  329 (394)
T 2ay1_A          310 AVRSGMLRLREQLAGELRDL  329 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            56777788888888887754

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.61  E-value=1.1e-07  Score=82.69  Aligned_cols=125  Identities=14%  Similarity=0.057  Sum_probs=91.9

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC-CCchh--ccccccc-
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI-IPDIV--TVGKPMG-  154 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v-~pDi~--~~~K~l~-  154 (224)
                      ++.+|+++..+...|.+. ++++++++.++            ++++|.++|+ .... ..+  + ..|++  +++|.+| 
T Consensus       174 ~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~-~~~~-~~~--~~~~~i~~~s~sK~~g~  248 (409)
T 2gb3_A          174 RTKGIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASA-LSI--ESDKVVVIDSVSKKFSA  248 (409)
T ss_dssp             TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCG-GGS--CCTTEEEEEESTTTTTC
T ss_pred             CCeEEEECCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEECcccccccCCC-CCCc-ccc--CCCCEEEEecchhccCC
Confidence            678888888777778764 56888888887            7888877664 3333 122  3 34766  6899998 


Q ss_pred             CCcccccceecH-HHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         155 NGHPVAAVITTK-EIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 ~G~p~~av~~~~-~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .|+++|++++++ ++++.+...  ....| +.|+++++++.++|+..+  -+++.++++++.+++.+.|+++
T Consensus       249 ~G~r~G~~~~~~~~l~~~l~~~--~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  317 (409)
T 2gb3_A          249 CGARVGCLITRNEELISHAMKL--AQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH  317 (409)
T ss_dssp             GGGCCEEEECSCHHHHHHHHHH--HHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccceEEEEEECcHHHHHHHHHH--HhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            689999999998 998887643  22345 889999999999986422  2456777888888888888764

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=98.60  E-value=1.1e-07  Score=82.39  Aligned_cols=127  Identities=13%  Similarity=0.027  Sum_probs=90.9

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchh--ccccccc-C
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMG-N  155 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~-~  155 (224)
                      ++.+|+++..+...|.+ .+++.++++.++            ++++|.+.+. ......++ .-.+|++  +++|.++ .
T Consensus       174 ~~~~v~i~~p~nptG~~-~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~-~~~~~i~~~s~sK~~~~~  250 (406)
T 1xi9_A          174 RTKAIAVINPNNPTGAL-YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE-HISPGSLT-KDVPVIVMNGLSKVYFAT  250 (406)
T ss_dssp             TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC-CCCHHHHC-SSSCEEEEEESTTTTCCG
T ss_pred             CceEEEEECCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC-CCCHHHcC-CCceEEEEeccccccCCC
Confidence            57888888877778876 466788888777            7887766443 33444442 0011454  5799998 6


Q ss_pred             Ccccccce--ecH----HHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         156 GHPVAAVI--TTK----EIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       156 G~p~~av~--~~~----~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+++|+++  +++    ++++.+...  .... ++.|+++++++.++|+...+  +++.++++++.+++.+.|+++
T Consensus       251 G~r~G~~~~~~~~~~~~~l~~~l~~~--~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~  323 (406)
T 1xi9_A          251 GWRLGYMYFVDPENKLSEVREAIDRL--ARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEI  323 (406)
T ss_dssp             GGCCEEEEEECTTCTTHHHHHHHHHH--HHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ccEEEEEEEecCchhHHHHHHHHHHH--HHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            89999999  898    898887642  1112 77899999999999974432  467788889999999988764

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=98.60  E-value=3.4e-07  Score=78.20  Aligned_cols=137  Identities=13%  Similarity=0.080  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +++|++.++.    ..++++|++++.+...|.+.+.++..+.+++.        ++. +|...   +....    ..+|+
T Consensus       134 ~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~----~~~di  201 (386)
T 2dr1_A          134 PEDLDDALRK----NPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSA-MGGAD---IKFDK----WGLDV  201 (386)
T ss_dssp             HHHHHHHHHH----CTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTT-BTTBC---CCTTT----TTCSE
T ss_pred             HHHHHHHHhc----CCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEcccc-ccCcc---ccccc----cCCcE
Confidence            4566666642    24678999999998899887766666666655        432 32221   12222    34799


Q ss_pred             hccc--ccccCCcccccceecHHHHHhhhcC--------------Cc--ccccCCCCcHHHHHHHHHHHHHHhhh----h
Q psy6205         147 VTVG--KPMGNGHPVAAVITTKEIAKSFQET--------------GV--EYFNTYGGNPVSCAVANAVMEVLETE----N  204 (224)
Q Consensus       147 ~~~~--K~l~~G~p~~av~~~~~i~~~~~~~--------------~~--~~~~T~~~~p~~~aaa~a~l~~~~~~----~  204 (224)
                      ++.+  |.++++.++|++++++++++.+...              ..  ....+++.|+++++++.++|+.+++.    +
T Consensus       202 ~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~  281 (386)
T 2dr1_A          202 VFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEK  281 (386)
T ss_dssp             EEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             EEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence            8877  9998765689999999998876321              00  12356778999999999999998654    7


Q ss_pred             HHHHHHHHHHHHHHhhhhc
Q psy6205         205 LREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       205 l~~~~~~~g~~l~~~l~~l  223 (224)
                      +.++++++.+++.+.|+++
T Consensus       282 ~~~~~~~~~~~l~~~L~~~  300 (386)
T 2dr1_A          282 WLEMYEKRAKMVREGVREI  300 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            8889999999999999865

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=98.58  E-value=7.1e-07  Score=76.93  Aligned_cols=136  Identities=13%  Similarity=0.101  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +++|++.++.     +++.+|++++.+...|.+.+.++..+.+++.        +++ +|..   .+..+.++    +|+
T Consensus       127 ~~~l~~~i~~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~-~~~~---~~~~~~~~----~d~  193 (411)
T 3nnk_A          127 PDQVEDAVKR-----IRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATAS-LGGN---PLETDVWG----LDA  193 (411)
T ss_dssp             HHHHHHHHHH-----HCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTT-BTTB---CCCTTTTT----CSE
T ss_pred             HHHHHHHHhh-----CCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcc-cCCc---ccchhccC----CcE
Confidence            4566666652     2678999999999999998888888888877        432 3221   12333333    566


Q ss_pred             hc--ccccccCCcccccceecHHHHHhhhcCC----------------------------------cccccCCCCcHHHH
Q psy6205         147 VT--VGKPMGNGHPVAAVITTKEIAKSFQETG----------------------------------VEYFNTYGGNPVSC  190 (224)
Q Consensus       147 ~~--~~K~l~~G~p~~av~~~~~i~~~~~~~~----------------------------------~~~~~T~~~~p~~~  190 (224)
                      ++  ++|.++++.++|++++++++.+.+....                                  .....+++.|+.++
T Consensus       194 ~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (411)
T 3nnk_A          194 VSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTAL  273 (411)
T ss_dssp             EECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHH
T ss_pred             EEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHH
Confidence            55  5699888788999999999988775421                                  00113345688899


Q ss_pred             HHHHHHHHHHhhh---hHHHHHHHHHHHHHHhhhhc
Q psy6205         191 AVANAVMEVLETE---NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       191 aaa~a~l~~~~~~---~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++.++++.+.++   ++.++++++.++|.+.|+++
T Consensus       274 ~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  309 (411)
T 3nnk_A          274 FGARECARLILQEGLDYGIARHKLHGDALVKGIQAM  309 (411)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999998654   78889999999999999875

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=98.58  E-value=6.3e-07  Score=76.31  Aligned_cols=136  Identities=11%  Similarity=0.071  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------------HHhCCccccccchhhhhcCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------------VQVGFGRVGTHWWAFQLQGD  140 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------------v~tG~GrtG~~~~~~~~~g~  140 (224)
                      +++|++.+..     +++.+|+++..+...|.+. +.+.++++.++              ++++|+..+. ......++ 
T Consensus       146 ~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~-  217 (367)
T 3euc_A          146 RGAMLAAMAE-----HQPAIVYLAYPNNPTGNLF-DAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESW-MSRLTDFG-  217 (367)
T ss_dssp             HHHHHHHHHH-----HCCSEEEEESSCTTTCCCC-CHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCS-GGGGGTCT-
T ss_pred             HHHHHHHhhc-----cCCCEEEEcCCCCCCCCCC-CHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccch-HHHHhhCC-
Confidence            4556666542     2567888887777788765 55567777654              5566654443 33444444 


Q ss_pred             CCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHh
Q psy6205         141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTP  219 (224)
Q Consensus       141 ~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~  219 (224)
                       ...++.+++|....|+++|++++++++++.+...    ..+|+.|+++++++.++|+..+. ++..++++++.++|.+.
T Consensus       218 -~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~  292 (367)
T 3euc_A          218 -NLLVMRTVSKLGLAGIRLGYVAGDPQWLEQLDKV----RPPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEG  292 (367)
T ss_dssp             -TEEEEEECCCTTSCSCCEEEEEECHHHHHHHGGG----CCSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CEEEEecchhhcccccCceeeeeCHHHHHHHHHh----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence             5567778999944679999999999999888642    35788999999999999987321 45677788888888888


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |+++
T Consensus       293 l~~~  296 (367)
T 3euc_A          293 MAAH  296 (367)
T ss_dssp             HHTS
T ss_pred             HHhC
Confidence            8765

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=98.58  E-value=6.8e-08  Score=84.88  Aligned_cols=131  Identities=14%  Similarity=0.053  Sum_probs=92.1

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcC--CCCCCchhccccccc-
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQG--DDIIPDIVTVGKPMG-  154 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g--~~v~pDi~~~~K~l~-  154 (224)
                      .++.+|+++..+...|.+. +.+.++++.++            ++++|++.|........+.  .++..++.+++|.+| 
T Consensus       208 ~~~~~v~l~~p~NPtG~~~-~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~  286 (449)
T 3qgu_A          208 KRTDIIFFCSPNNPTGAAA-TRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGF  286 (449)
T ss_dssp             CCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTC
T ss_pred             CCCCEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCC
Confidence            3567888886666677654 66678888776            8888877763122333332  014455778999998 


Q ss_pred             CCcccccceecHHHHHh--------hhcCCcccccCCCCcHHHHHHHHHHHHHH--h-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         155 NGHPVAAVITTKEIAKS--------FQETGVEYFNTYGGNPVSCAVANAVMEVL--E-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 ~G~p~~av~~~~~i~~~--------~~~~~~~~~~T~~~~p~~~aaa~a~l~~~--~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .|+++|++++++++++.        +...  ....+++.++++++++.++|+..  + -+++.++++++.++|.+.|+++
T Consensus       287 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  364 (449)
T 3qgu_A          287 TGVRLGWTVVPKALKYANGEPVHADWNRV--MTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM  364 (449)
T ss_dssp             TTCCCEEEECCTTCBCTTSCBHHHHHHHH--HHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccceeEEEecCHHHHhhhhhhHHHHHHHH--hhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            78999999999988752        2211  22345688999999999998762  1 3467888889999999998865

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=98.55  E-value=2.2e-07  Score=79.37  Aligned_cols=124  Identities=9%  Similarity=-0.069  Sum_probs=85.8

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhh---------hcCCCCCCchhcc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQ---------LQGDDIIPDIVTV  149 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~---------~~g~~v~pDi~~~  149 (224)
                      ++.+|++...+...|.+. +.+.++++.++            ++++|.++|. .....         .++  ...++.++
T Consensus       154 ~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~i~~~s~  229 (376)
T 3ezs_A          154 EVDLVILNSPNNPTGRTL-SLEELISWVKLALKHDFILINDECYSEIYENTP-PPSLLEACMLAGNEAFK--NVLVIHSL  229 (376)
T ss_dssp             HCSEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC-CCCHHHHHHHTTCTTCT--TEEEEEES
T ss_pred             CCCEEEEcCCCCCcCCCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCC-CCCHHHccccccccccC--cEEEEecc
Confidence            345666654466677765 55557777665            8888877774 33332         233  55667789


Q ss_pred             ccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhh
Q psy6205         150 GKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTPK  220 (224)
Q Consensus       150 ~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~l  220 (224)
                      +|.+| .|+++|++++++++++.+...  ....+++.|+++++++.++|+..+. ++..++++++-+++.+.|
T Consensus       230 sK~~g~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l  300 (376)
T 3ezs_A          230 SKRSSAPGLRSGFIAGDSRLLEKYKAF--RAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIF  300 (376)
T ss_dssp             TTTTTCGGGCCEEEEECHHHHHHHHHH--HTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hhccCCccceeEEEeeCHHHHHHHHHH--HhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHh
Confidence            99997 789999999999999988653  3456889999999999999885221 344455555556665554

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=98.54  E-value=2.2e-07  Score=80.50  Aligned_cols=129  Identities=13%  Similarity=0.016  Sum_probs=90.5

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCc----hhcccccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPD----IVTVGKPM  153 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pD----i~~~~K~l  153 (224)
                      +++.+|+++..+...|.+ .+.+.++++.++            ++++|+..|........++  -.+|    +.+++|.+
T Consensus       162 ~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~  238 (400)
T 3asa_A          162 THIDILCLCSPNNPTGTV-LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIP--DARFCAIEINSFSKPL  238 (400)
T ss_dssp             CCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGST--TGGGTEEEEEECCGGG
T ss_pred             cCccEEEEeCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCC--CCCCceEEEecchhhc
Confidence            357788887767667866 467777777766            7787766653111222222  1244    56899999


Q ss_pred             c-CCcccccceecHHH-------HHhhhcCCcccccCC-CCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         154 G-NGHPVAAVITTKEI-------AKSFQETGVEYFNTY-GGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       154 ~-~G~p~~av~~~~~i-------~~~~~~~~~~~~~T~-~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      | .|+++|++++++++       .+.+...  ....+| +.|+++++++.++|+...-+++.++++++.++|.+.|+++
T Consensus       239 g~~GlriG~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  315 (400)
T 3asa_A          239 GFAGIRLGWTVIPQELTYADGHFVIQDWER--FLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT  315 (400)
T ss_dssp             TTTTCCCEEEECCTTCBCTTSCBHHHHHHH--HHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcchheeEEeeChhhccchhhhHHHHHHH--HhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            8 78999999999887       5544321  223445 5899999999999987544578889999999999998765

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=97.94  E-value=9.8e-09  Score=88.71  Aligned_cols=127  Identities=8%  Similarity=0.064  Sum_probs=84.3

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCcccccc---chhhhh--cCCCCCCchhcccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTH---WWAFQL--QGDDIIPDIVTVGKPM  153 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~---~~~~~~--~g~~v~pDi~~~~K~l  153 (224)
                      ++.+|+++..+...|.+ .++++++++.++            ++++|.++|..   ++....  .+  ..+++.+++|.+
T Consensus       164 ~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~--~~i~~~s~sK~~  240 (392)
T 3b1d_A          164 DVKLYLLCNPHNPGGRV-WEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKD--FALVLSSATKTF  240 (392)
Confidence            56677776666667765 455677777766            78888776631   223222  33  667788999999


Q ss_pred             c-CCcccccceecH-HHHHhhhcCCcccccCC-CCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhh
Q psy6205         154 G-NGHPVAAVITTK-EIAKSFQETGVEYFNTY-GGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       154 ~-~G~p~~av~~~~-~i~~~~~~~~~~~~~T~-~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~  222 (224)
                      + +|+++|++++++ ++++.+...  ....++ +.|+++++++.++|+..++  +++.++.+++-++|.+.|++
T Consensus       241 ~~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~  312 (392)
T 3b1d_A          241 NIAGTKNSYAIIENPTLCAQFKHQ--QLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQ  312 (392)
Confidence            8 789999999975 488877643  223333 5699999999999975321  23444555555666665544

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=98.53  E-value=4.2e-07  Score=77.50  Aligned_cols=125  Identities=9%  Similarity=0.079  Sum_probs=85.0

Q ss_pred             CceEEE-EccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhh-hhcCCCCCCchhccccccc-C
Q psy6205          91 RPCAFF-AESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAF-QLQGDDIIPDIVTVGKPMG-N  155 (224)
Q Consensus        91 ~iaavi-~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~-~~~g~~v~pDi~~~~K~l~-~  155 (224)
                      ++.+|+ .+| +...|.+ .++++++++.++            ++++|++.+..+... +.++  ....+.+++|.+| +
T Consensus       146 ~~~~v~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~i~~~s~sK~~~~~  221 (364)
T 1lc5_A          146 DLDCLFLCTP-NNPTGLL-PERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNP--HIWVLRSLTKFYAIP  221 (364)
T ss_dssp             TCCEEEEESS-CTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCT--TEEEEEESTTTTTCT
T ss_pred             CCCEEEEeCC-CCCCCCC-CCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCC--CEEEEEECchhhcCC
Confidence            445555 566 5556765 566788887776            777776545312221 2232  3344558999998 7


Q ss_pred             Ccccccce-ecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         156 GHPVAAVI-TTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       156 G~p~~av~-~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+++|+++ +++++++.+...    ..+|+.|+++++++.++|+.-+ -+...++++++.++|.+.|+++
T Consensus       222 G~r~G~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  287 (364)
T 1lc5_A          222 GLRLGYLVNSDDAAMARMRRQ----QMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQL  287 (364)
T ss_dssp             TTCCEEEECCCHHHHHHHHHH----SCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ccceEEEEECCHHHHHHHHHh----CCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            89999999 999999887642    2478899999999998887521 1245556677777888887754

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=98.52  E-value=1.2e-07  Score=81.62  Aligned_cols=127  Identities=12%  Similarity=0.022  Sum_probs=88.0

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhh--------cCCCCCCchhccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQL--------QGDDIIPDIVTVG  150 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~--------~g~~v~pDi~~~~  150 (224)
                      ++.+|+++..+...|.+.+..+ ++++.++            ++++|.++|...+....        .+  ..+++.+++
T Consensus       168 ~~~~v~l~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~s~s  244 (396)
T 3jtx_A          168 RTKLVFVCSPNNPSGSVLDLDG-WKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQ--KLLMFTSLS  244 (396)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCT--TEEEEEEST
T ss_pred             CcEEEEEECCCCCCCCcCCHHH-HHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccC--cEEEEeccc
Confidence            4667777655777787665554 5555554            88888777721233221        33  567778999


Q ss_pred             cccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhh
Q psy6205         151 KPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       151 K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      |.++ .|+++|++++++++++.+...  ...+|++.|+++++++.++|+.-+ -+...+++++.-+++.+.|++
T Consensus       245 K~~~~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~  316 (396)
T 3jtx_A          245 KRSNVPGLRSGFVAGDAELLKNFLLY--RTYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQ  316 (396)
T ss_dssp             TTSSCGGGCCEEEEECHHHHHHHHHH--HHHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccCCcccceEEEEeCHHHHHHHHHH--HhhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9976 579999999999999988643  345688999999999999987421 124555666666777777654

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=98.50  E-value=6.7e-07  Score=77.97  Aligned_cols=138  Identities=8%  Similarity=0.036  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEE-ccccCCCCcccCCHHHHHHHHHH------------HHhCCcccccc-c-------h
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFA-ESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTH-W-------W  133 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~-Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~-~-------~  133 (224)
                      +++|++.++    . .++.+|++ .| +...|.+. +.+.++++.++            ++++|...+.. .       .
T Consensus       171 ~~~l~~~l~----~-~~~~~v~l~~p-~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~  243 (437)
T 3g0t_A          171 REKLESYLQ----T-GQFCSIIYSNP-NNPTWQCM-TDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQP  243 (437)
T ss_dssp             HHHHHHHHT----T-TCCCEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCC
T ss_pred             HHHHHHHHh----c-CCceEEEEeCC-CCCCCCcC-CHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhh
Confidence            455555542    1 34555555 66 66677665 44556666665            77765443320 1       1


Q ss_pred             hhhh-cCCCCCCchhccccccc-CCcccccceecHHHHH-h-----------------hhcCCcccccCCCCcHHHHHHH
Q psy6205         134 AFQL-QGDDIIPDIVTVGKPMG-NGHPVAAVITTKEIAK-S-----------------FQETGVEYFNTYGGNPVSCAVA  193 (224)
Q Consensus       134 ~~~~-~g~~v~pDi~~~~K~l~-~G~p~~av~~~~~i~~-~-----------------~~~~~~~~~~T~~~~p~~~aaa  193 (224)
                      .... .+  ....+.+++|.++ .|+++|++++++++++ .                 +...  ....+++.|+++++++
T Consensus       244 ~~~~~~~--~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~  319 (437)
T 3g0t_A          244 SVANYTD--NYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSA--LYALSSGATHSAQWGM  319 (437)
T ss_dssp             CGGGTCS--CEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTH--HHHHHSSSCHHHHHHH
T ss_pred             ccCCCCC--cEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHH--HhhhcCCCCHHHHHHH
Confidence            2211 22  3333557999999 7899999999999998 6                 4321  2345788999999999


Q ss_pred             HHHHHHHh-----hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         194 NAVMEVLE-----TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       194 ~a~l~~~~-----~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .++|+..+     -++..++++++.+++.+.|+++
T Consensus       320 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  354 (437)
T 3g0t_A          320 AAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN  354 (437)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999875     4578888999999999999875

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=98.49  E-value=1.9e-07  Score=80.27  Aligned_cols=139  Identities=11%  Similarity=0.116  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCcccc--ccchhhhhcCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVG--THWWAFQLQGD  140 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG--~~~~~~~~~g~  140 (224)
                      +++|++.++   +.+.+..++++...+...|. ..+.+.++++.++            ++++|++.|  . ++....+. 
T Consensus       159 ~~~l~~~l~---~~~~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~-  232 (396)
T 2q7w_A          159 FDALINSLN---EAQAGDVVLFHGCCHNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEED-AEGLRAFA-  232 (396)
T ss_dssp             HHHHHHHHT---TCCTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHH-THHHHHHH-
T ss_pred             HHHHHHHHH---hCCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccch-hHHHHHHH-
Confidence            445555543   22223444554444444565 5667777777776            778887654  2 33444442 


Q ss_pred             CCCCc----hhccccccc-CCccccccee---cHH----HHHhhhcCCcccccCCCC-cHHHHHHHHHHHHHH------h
Q psy6205         141 DIIPD----IVTVGKPMG-NGHPVAAVIT---TKE----IAKSFQETGVEYFNTYGG-NPVSCAVANAVMEVL------E  201 (224)
Q Consensus       141 ~v~pD----i~~~~K~l~-~G~p~~av~~---~~~----i~~~~~~~~~~~~~T~~~-~p~~~aaa~a~l~~~------~  201 (224)
                       ..+|    +.+++|.+| .|+++|++++   +++    +.+.+..   ....++.+ |+++++++.++|+..      +
T Consensus       233 -~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~  308 (396)
T 2q7w_A          233 -AMHKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKA---AIRANYSNPPAHGASVVATILSNDALRAIWE  308 (396)
T ss_dssp             -HHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHH
T ss_pred             -hcCCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHH---HHhhccCCCCcHHHHHHHHHhcChhhHHHHH
Confidence             2234    447899999 7999999997   664    4444432   12235544 999999999988653      1


Q ss_pred             --hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         202 --TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       202 --~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                        -+.+.++++++.+++.+.|+++
T Consensus       309 ~~~~~~~~~~~~~~~~l~~~L~~~  332 (396)
T 2q7w_A          309 QELTDMRQRIQRMRQLFVNTLQEK  332 (396)
T ss_dssp             HHHHHC-CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence              1345566777888888888765

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=98.49  E-value=6.9e-07  Score=76.97  Aligned_cols=133  Identities=11%  Similarity=0.032  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEE-ccccCCCCcccCCHHHHHHHHHH--------HHhC-CccccccchhhhhcCCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFA-ESLQSCGGQIIPPANYLREVYKH--------VQVG-FGRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~-Epv~~~~G~~~~~~~~l~~~~~~--------v~tG-~GrtG~~~~~~~~~g~~v~p  144 (224)
                      +++|++.++.     .++++|++ +|..+   ...+.++..+.+++.        +++. +...|. ...  .+.   .+
T Consensus       152 ~~~l~~~l~~-----~~~~~v~~~~p~~~---~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~--~~~---~~  217 (407)
T 2dkj_A          152 LEEVRRLALE-----HRPKVIVAGASAYP---RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGL-HPN--PLP---YA  217 (407)
T ss_dssp             HHHHHHHHHH-----HCCSEEEECCSSCC---SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTC-SCC--CTT---TC
T ss_pred             HHHHHHHHhh-----cCCeEEEEeccccC---CCCCHHHHHHHHHHcCCEEEEEccccccccccCc-cCC--ccc---cc
Confidence            4566665542     14567777 78775   444444444444444        5443 433343 111  111   27


Q ss_pred             chh--cccccccCCcccccceec-HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHH
Q psy6205         145 DIV--TVGKPMGNGHPVAAVITT-KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHT  218 (224)
Q Consensus       145 Di~--~~~K~l~~G~p~~av~~~-~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~  218 (224)
                      |++  +++|+|+|+ ..|+++++ +++++.+... ..++.+.+.++..++++.++|+.+.+   +++.++++++.++|.+
T Consensus       218 di~~~s~sK~l~g~-~~G~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~  295 (407)
T 2dkj_A          218 HVVTSTTHKTLRGP-RGGLILSNDPELGKRIDKL-IFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAE  295 (407)
T ss_dssp             SEEEEESSGGGCCC-SCEEEEESCHHHHHHHHHH-HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEeccccCCCC-CceEEEECCHHHHHHHHhh-hcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            888  789999854 56999999 8998877542 12345666788888888999998754   5788899999999999


Q ss_pred             hhhhc
Q psy6205         219 PKKEN  223 (224)
Q Consensus       219 ~l~~l  223 (224)
                      .|+++
T Consensus       296 ~L~~~  300 (407)
T 2dkj_A          296 ELARR  300 (407)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            99865

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=98.48  E-value=4.7e-07  Score=78.02  Aligned_cols=125  Identities=14%  Similarity=0.074  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +++|++.++      +++++|++|++++..|.+.+.++..+.+++.        +++++... . ..   .++    +|+
T Consensus       127 ~~~l~~~i~------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~-~-~~---~~~----~di  191 (386)
T 1cs1_A          127 EQALRAALA------EKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQ-N-PL---ALG----ADL  191 (386)
T ss_dssp             HHHHHHHHH------TCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-C-GG---GGT----CSE
T ss_pred             HHHHHHhhc------cCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-C-cc---ccC----ceE
Confidence            455555553      3678999999999999888755555555555        77666332 1 11   233    566


Q ss_pred             h--cccccccCC-ccc-ccceecH-HHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHH
Q psy6205         147 V--TVGKPMGNG-HPV-AAVITTK-EIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQL  216 (224)
Q Consensus       147 ~--~~~K~l~~G-~p~-~av~~~~-~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l  216 (224)
                      +  +++|.++++ .++ |++++++ ++++.+...  ....++..||+++++++++++.+.+  +.+.++.+.+.++|
T Consensus       192 ~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l  266 (386)
T 1cs1_A          192 VLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW--ANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYL  266 (386)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH--HHHHTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCcccccCCCCceeEEEEeCcHHHHHHHHHH--HHhcCCCCCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            5  799999875 455 8888885 888877643  3335677899999998888876632  33444444444444

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=98.47  E-value=8.1e-07  Score=77.50  Aligned_cols=138  Identities=7%  Similarity=-0.031  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHccCCCCce-EEEEccccCCCCcccCCHHHHHHH----HH-----H--------HHhCCccccccchhhh
Q psy6205          75 AQDVQDLIEAMGRNGKRPC-AFFAESLQSCGGQIIPPANYLREV----YK-----H--------VQVGFGRVGTHWWAFQ  136 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~ia-avi~Epv~~~~G~~~~~~~~l~~~----~~-----~--------v~tG~GrtG~~~~~~~  136 (224)
                      +++|++.++.   .+.+.. .++.+| +...|.+. +.++++++    ++     .        ++++|.+.|..+....
T Consensus       176 ~~~l~~~l~~---~~~~~~~v~i~~p-~nptG~~~-~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~  250 (430)
T 2x5f_A          176 TDSLVEALQS---YNKDKVIMILNYP-NNPTGYTP-THKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLF  250 (430)
T ss_dssp             SHHHHHHHHH---CCSSEEEEEECSS-CTTTCCCC-CHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHH
T ss_pred             HHHHHHHHHh---cCCCCEEEEEcCC-CCCCCCcC-CHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHH
Confidence            4556666653   233444 455667 66678654 54555544    45     4        7777766663111221


Q ss_pred             -hc-CCCCCCc------hhccccccc-CCccccccee---cHHHHHhhhcCCcccc----cCCCCcHHHHHHHHHHHH-H
Q psy6205         137 -LQ-GDDIIPD------IVTVGKPMG-NGHPVAAVIT---TKEIAKSFQETGVEYF----NTYGGNPVSCAVANAVME-V  199 (224)
Q Consensus       137 -~~-g~~v~pD------i~~~~K~l~-~G~p~~av~~---~~~i~~~~~~~~~~~~----~T~~~~p~~~aaa~a~l~-~  199 (224)
                       .+ +  ..++      +.+++|.+| .|+++|++++   ++++.+.+...  ...    .|++.|+++++++.++|+ .
T Consensus       251 ~~~~~--~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~a~~~~l~~~  326 (430)
T 2x5f_A          251 TALTN--LHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAK--VKGLIRSNISSGPLPTQSAVKHVLKNN  326 (430)
T ss_dssp             HHHHT--TCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHH--HHHHHHTTTSSCCHHHHHHHHHHHHSC
T ss_pred             HHHhh--ccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHH--HhhhhhcccCCCChHHHHHHHHHHccC
Confidence             22 2  3455      447899998 7899999999   99999887643  222    688899999999999998 3


Q ss_pred             ---Hhh-hhHHHHHHHHHHHHHHhhh
Q psy6205         200 ---LET-ENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       200 ---~~~-~~l~~~~~~~g~~l~~~l~  221 (224)
                         +++ ++..+++++..++|.+.|+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~l~~~L~  352 (430)
T 2x5f_A          327 KQFDKEIEQNIQTLKERYEVTKEVVY  352 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               332 3477778888888888887

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=98.47  E-value=7.9e-07  Score=75.80  Aligned_cols=128  Identities=5%  Similarity=-0.037  Sum_probs=88.1

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhcccccccCCccccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAA  161 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G~p~~a  161 (224)
                      .++.+|++++.+...|.+.+.++..+.+++.        +++++++.    +..+.++  +...+.+++|.++++.++++
T Consensus       143 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~----~~~~~~~--~d~~~~s~~K~l~~~~G~g~  216 (376)
T 3f0h_A          143 QNFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADP----FNMNECG--ADVMITGSQKVLACPPGISV  216 (376)
T ss_dssp             SCCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSC----CCHHHHT--CSEEEEETTTTTCCCSSCEE
T ss_pred             cCceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcc----ccccccC--ccEEEecCcccccCCCceEE
Confidence            4688999999999999988844444444444        66655432    3345566  54444566799987777899


Q ss_pred             ceecHHHHHhhhcCC-cc--------------cccCCCCcHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHhhhh
Q psy6205         162 VITTKEIAKSFQETG-VE--------------YFNTYGGNPVSCAVANAVMEVLETE----NLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       162 v~~~~~i~~~~~~~~-~~--------------~~~T~~~~p~~~aaa~a~l~~~~~~----~l~~~~~~~g~~l~~~l~~  222 (224)
                      +++++++.+.+.... ..              ....++.+..+++++.++++.++++    .+.++.+++.+++.+.|++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  296 (376)
T 3f0h_A          217 IVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKD  296 (376)
T ss_dssp             EEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998876421 01              1124455556668888899988654    5777788888888888876


Q ss_pred             c
Q psy6205         223 N  223 (224)
Q Consensus       223 l  223 (224)
                      +
T Consensus       297 ~  297 (376)
T 3f0h_A          297 L  297 (376)
T ss_dssp             S
T ss_pred             c
Confidence            5

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=98.46  E-value=6.6e-07  Score=75.75  Aligned_cols=138  Identities=11%  Similarity=-0.006  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-----------HHhCCcccccc--chh-hhhc-C
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-----------VQVGFGRVGTH--WWA-FQLQ-G  139 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----------v~tG~GrtG~~--~~~-~~~~-g  139 (224)
                      +++|++.+.    ...++.+|+++..+...|.+.+.++ ++++.+.           ++.+|.+.+..  ... ...+ +
T Consensus       129 ~~~l~~~l~----~~~~~~~v~l~~p~nptG~~~~~~~-l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~  203 (354)
T 3ly1_A          129 IEGLKAAVA----AYSGPSIVYLVNPNNPTGTITPADV-IEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAE  203 (354)
T ss_dssp             HHHHHHHHH----TCSSCEEEEEESSCTTTCCCCCHHH-HHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCS
T ss_pred             HHHHHHHhc----cCCCCCEEEEeCCCCCcCCCcCHHH-HHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCC
Confidence            455665554    1246778888777777887765555 5555443           77777666531  111 1122 2


Q ss_pred             CCCCCchhccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Q psy6205         140 DDIIPDIVTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLH  217 (224)
Q Consensus       140 ~~v~pDi~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~  217 (224)
                        ....+.+++|.+| .|+++|++++++++.+.+...    ...++.|+++++++.++|+..+ -++..++++++.++|.
T Consensus       204 --~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~  277 (354)
T 3ly1_A          204 --NIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRY----VAGEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILL  277 (354)
T ss_dssp             --SEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGG----TTCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             --CEEEEeeChhhccChhhhheeeecCHHHHHHHHHh----cCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence              3344557899998 789999999999999988643    2347899999999999987542 2456677778888888


Q ss_pred             Hhhhhc
Q psy6205         218 TPKKEN  223 (224)
Q Consensus       218 ~~l~~l  223 (224)
                      +.|+++
T Consensus       278 ~~l~~~  283 (354)
T 3ly1_A          278 KALEDL  283 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHC
Confidence            887654

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=98.46  E-value=1.9e-06  Score=72.37  Aligned_cols=136  Identities=13%  Similarity=0.068  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +++|++.++.   +  ++.+|+++..+...|.+.+.++..+.+++.        ++ ++|+..   +....++    +|+
T Consensus       113 ~~~l~~~l~~---~--~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~-~~~~~~---~~~~~~~----~d~  179 (353)
T 2yrr_A          113 PEAVARALKR---R--RYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVT-TLGMLP---FSMRAMG----VDY  179 (353)
T ss_dssp             HHHHHHHHHH---S--CCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTT-TTTTSC---CCHHHHT----CSE
T ss_pred             HHHHHHHHHh---C--CCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCc-cccccc---ccccccC----ceE
Confidence            4556665542   2  567899999998889888866666666666        55 565543   2233344    687


Q ss_pred             hcc--cccccCCcccccceecHHHHHhhhc-CCc------------ccccCCCCcHHHHHHHHHHHHHHhhh---hHHHH
Q psy6205         147 VTV--GKPMGNGHPVAAVITTKEIAKSFQE-TGV------------EYFNTYGGNPVSCAVANAVMEVLETE---NLREH  208 (224)
Q Consensus       147 ~~~--~K~l~~G~p~~av~~~~~i~~~~~~-~~~------------~~~~T~~~~p~~~aaa~a~l~~~~~~---~l~~~  208 (224)
                      +++  +|.++++..+|++++++++++.+.. ...            ....+++.|+.+++++.++|+.++++   ++.++
T Consensus       180 ~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~  259 (353)
T 2yrr_A          180 AFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERR  259 (353)
T ss_dssp             EECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             EEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            765  6988876668999999999887641 000            11234456788888888999988654   67888


Q ss_pred             HHHHHHHHHHhhhhc
Q psy6205         209 ALDVGNQLHTPKKEN  223 (224)
Q Consensus       209 ~~~~g~~l~~~l~~l  223 (224)
                      .+++.+++.+.|+++
T Consensus       260 ~~~~~~~l~~~L~~~  274 (353)
T 2yrr_A          260 AREVYAWVLEELKAR  274 (353)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHC
Confidence            999999999998764

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=98.45  E-value=2.1e-06  Score=72.45  Aligned_cols=137  Identities=10%  Similarity=0.063  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +++|++.++.   + .++.+|++.......|.+.+.++..+.+++.        +++ +|...   +..+.    ..+|+
T Consensus       119 ~~~l~~~l~~---~-~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~-~~~~~---~~~~~----~~~di  186 (366)
T 1m32_A          119 VQAIDAILNA---D-PTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSS-FGGIP---MDIAA----LHIDY  186 (366)
T ss_dssp             HHHHHHHHHH---C-TTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTT-TTTSC---CCTTT----TTCSE
T ss_pred             HHHHHHHHhc---C-CCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCcc-ccCcC---ccccc----cCccE
Confidence            4566666652   2 2455666665555678888766666666665        443 43332   11122    23788


Q ss_pred             hc--ccccccCCcccccceecHHHHHhhhcCCccc----------------ccCCCCcHHHHHHHHHHHHHHhhh----h
Q psy6205         147 VT--VGKPMGNGHPVAAVITTKEIAKSFQETGVEY----------------FNTYGGNPVSCAVANAVMEVLETE----N  204 (224)
Q Consensus       147 ~~--~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~----------------~~T~~~~p~~~aaa~a~l~~~~~~----~  204 (224)
                      ++  ++|.++++.++|++++++++++.+......+                ...++.|+.+++++.++|+.+++.    .
T Consensus       187 ~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~  266 (366)
T 1m32_A          187 LISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAA  266 (366)
T ss_dssp             EEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             EEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhH
Confidence            75  6899987777899999999988775421111                013788999999999999998653    5


Q ss_pred             HHHHHHHHHHHHHHhhhhc
Q psy6205         205 LREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       205 l~~~~~~~g~~l~~~l~~l  223 (224)
                      +.++++++.+++.+.|+++
T Consensus       267 ~~~~~~~~~~~l~~~L~~~  285 (366)
T 1m32_A          267 RHQRYQQNQRSLVAGMRAL  285 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHC
Confidence            7888999999999999864

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=98.45  E-value=1e-06  Score=75.12  Aligned_cols=141  Identities=11%  Similarity=-0.003  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCC--ccccc--------cchhhh
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGF--GRVGT--------HWWAFQ  136 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~--GrtG~--------~~~~~~  136 (224)
                      +++|++.++.   .  ++.+|++++.....|.+.+.++..+.+++.        +++++  +.++.        ..+.++
T Consensus       160 ~~~l~~~i~~---~--~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~  234 (397)
T 3f9t_A          160 EKFVKDAVED---Y--DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS  234 (397)
T ss_dssp             HHHHHHHHHH---S--CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGG
T ss_pred             HHHHHHHHhh---c--CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhccccccccccccccccc
Confidence            4566666652   1  567888888888889888766666666666        66653  23331        023334


Q ss_pred             hcCCCCCCchhcccccccCCcccccceecHHH-HHhhhcC-Cc-c-------cccCCCCcHHHHHHHHHHHHHHhhhhHH
Q psy6205         137 LQGDDIIPDIVTVGKPMGNGHPVAAVITTKEI-AKSFQET-GV-E-------YFNTYGGNPVSCAVANAVMEVLETENLR  206 (224)
Q Consensus       137 ~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i-~~~~~~~-~~-~-------~~~T~~~~p~~~aaa~a~l~~~~~~~l~  206 (224)
                      . +  +.+.+.+++|.+++|.++|+++++++. .+.+... .. .       .++++..++++++++++.+....-+++.
T Consensus       235 ~-~--~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  311 (397)
T 3f9t_A          235 L-G--VDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIV  311 (397)
T ss_dssp             G-T--CSEEECCTTTTTCCCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c-c--CCeEEEccccccCCCCCceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHH
Confidence            4 5  666677889999888899999887653 3333211 00 0       0223445677777777777655456788


Q ss_pred             HHHHHHHHHHHHhhhhc
Q psy6205         207 EHALDVGNQLHTPKKEN  223 (224)
Q Consensus       207 ~~~~~~g~~l~~~l~~l  223 (224)
                      ++++++.+++.+.|+++
T Consensus       312 ~~~~~~~~~l~~~L~~~  328 (397)
T 3f9t_A          312 NECMENTLYLYKKLKEN  328 (397)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHC
Confidence            88999999999999875

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=98.44  E-value=1.2e-06  Score=75.30  Aligned_cols=132  Identities=15%  Similarity=0.182  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEcc-ccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCC-CC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAES-LQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDI-IP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Ep-v~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v-~p  144 (224)
                      +++|++.+..     .++++|++.| ..   |...+.++..+.+++.        +++ +|+++. .  ....+  + .+
T Consensus       152 ~~~l~~~i~~-----~~~~~v~~~~~~~---~~~~~l~~i~~l~~~~~~~li~Dea~~-~g~~~~-~--~~~~~--~~~~  217 (405)
T 2vi8_A          152 YDDVREKARL-----HRPKLIVAAAAAY---PRIIDFAKFREIADEVGAYLMVDMAHI-AGLVAA-G--LHPNP--VPYA  217 (405)
T ss_dssp             HHHHHHHHHH-----HCCSEEEECCSSC---CSCCCHHHHHHHHHHHTCEEEEECTTT-HHHHHT-T--SSCCS--TTTC
T ss_pred             HHHHHHHHHh-----cCCeEEEEeCCCC---CccCCHHHHHHHHHHcCCEEEEEcccc-cccccc-C--cCCCc--cccC
Confidence            4556665542     1356777754 33   3332333444444444        555 555543 1  11122  2 58


Q ss_pred             chh--cccccccCCcccccceecHHHHHhhhcCCcccccCCCC-cHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHH
Q psy6205         145 DIV--TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGG-NPVSCAVANAVMEVLET---ENLREHALDVGNQLHT  218 (224)
Q Consensus       145 Di~--~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~-~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~  218 (224)
                      |++  +++|.++|+.. |++++++++++.+...  ...+++++ ++..++++.++|+.+++   +++.++++++.++|.+
T Consensus       218 di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~  294 (405)
T 2vi8_A          218 HFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKA--IFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLAS  294 (405)
T ss_dssp             SEEEEESSSTTCCCSC-EEEEECHHHHHHHHHH--HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEeccccCCCCCC-eEEEEcHHHHHHHHhh--hcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            887  78999986544 8899999998877542  11234444 78888888899998764   6788999999999999


Q ss_pred             hhhhc
Q psy6205         219 PKKEN  223 (224)
Q Consensus       219 ~l~~l  223 (224)
                      .|+++
T Consensus       295 ~L~~~  299 (405)
T 2vi8_A          295 ALQNE  299 (405)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            99865

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=98.44  E-value=6.8e-07  Score=76.06  Aligned_cols=124  Identities=11%  Similarity=0.079  Sum_probs=90.3

Q ss_pred             eEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccccccc-CCcccccce
Q psy6205          93 CAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMG-NGHPVAAVI  163 (224)
Q Consensus        93 aavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~-~G~p~~av~  163 (224)
                      .+++++..+...|.+.+.++..+.+++.        ++++|...+. ....+..+  ....+.+++|.+| .|+++|+++
T Consensus       151 ~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~--~~i~~~s~sK~~g~~G~r~G~~~  227 (360)
T 3hdo_A          151 KVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNA-LELVRRHE--NVVVTRTLSKSYSLAGMRIGLAI  227 (360)
T ss_dssp             SEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCC-THHHHHCS--SEEEEEESTTTTSCTTSCCEEEE
T ss_pred             CEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcch-hHHhccCC--CEEEEecchHhhcCCccceeeEe
Confidence            3666766677789888887766666554        7777744332 22334444  5556668999998 689999999


Q ss_pred             ecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         164 TTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       164 ~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++++++.+...    ..+|+.|+++++++.++|+..+ -++..++++++.++|.+.|+++
T Consensus       228 ~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  284 (360)
T 3hdo_A          228 ARPEVIAALDKI----RDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI  284 (360)
T ss_dssp             CCHHHHHHHHHH----SCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eCHHHHHHHHHh----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            999999988643    3568899999999999998632 1456777788888888888764

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=98.42  E-value=6.4e-07  Score=77.49  Aligned_cols=126  Identities=12%  Similarity=0.075  Sum_probs=90.0

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhcc--cccccCCccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTV--GKPMGNGHPV  159 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~--~K~l~~G~p~  159 (224)
                      +++.+|++++++...|.+.+.++..+.+++.        +++ +|...   +..+.++    +|++++  +|.+++|..+
T Consensus       164 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~~----~d~~~~s~~K~l~~g~~~  235 (416)
T 1qz9_A          164 QDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHS-AGAVP---VDLHQAG----ADYAIGCTYKYLNGGPGS  235 (416)
T ss_dssp             TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTT-TTTSC---CCHHHHT----CSEEEECSSSTTCCCTTC
T ss_pred             CCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEcccc-ccCcC---CChhhcC----CCEEEecCcccCCCCCCC
Confidence            3678999999999999888866666666665        543 44332   1233333    788876  5999888777


Q ss_pred             -ccceecHHHHHhhhcCCcc---------------------cccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHH
Q psy6205         160 -AAVITTKEIAKSFQETGVE---------------------YFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGN  214 (224)
Q Consensus       160 -~av~~~~~i~~~~~~~~~~---------------------~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~  214 (224)
                       |++++++++.+.+......                     ....++.|+.+++++.++|+.+.+   +++.++++++.+
T Consensus       236 ~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~  315 (416)
T 1qz9_A          236 QAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTD  315 (416)
T ss_dssp             CCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence             9999999987766432000                     012335688899999999999864   467888999999


Q ss_pred             HHHHhhhhc
Q psy6205         215 QLHTPKKEN  223 (224)
Q Consensus       215 ~l~~~l~~l  223 (224)
                      +|.+.|+++
T Consensus       316 ~l~~~L~~~  324 (416)
T 1qz9_A          316 LFIELVEQR  324 (416)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999998764

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=98.42  E-value=6e-07  Score=77.87  Aligned_cols=125  Identities=10%  Similarity=0.016  Sum_probs=87.8

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPV  159 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~  159 (224)
                      +++++|++++++...|.+.+.++..+.+++.        +++ +|..     ......  ..+|+++++  |.+ |+.++
T Consensus       162 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~-~~~~-----~~~~~~--~~~di~~~s~sK~~-g~~g~  232 (423)
T 3lvm_A          162 DDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQS-VGKL-----PIDLSQ--LKVDLMSFSGHKIY-GPKGI  232 (423)
T ss_dssp             TTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTT-TTTS-----CCCTTT--SCCSEEEEESTTTT-SCSSC
T ss_pred             CCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhh-cCCC-----CcChhh--cCCCEEEechHHhc-CCCCe
Confidence            3678999999999999988866655555555        433 2211     122222  458999877  954 44568


Q ss_pred             ccceecHHHHHhhhcCCc-----ccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         160 AAVITTKEIAKSFQETGV-----EYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       160 ~av~~~~~i~~~~~~~~~-----~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |++++++++.+.+.....     ....+.+.++.+++++.++++.+++  +++.++++++.++|.+.|+++
T Consensus       233 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~  303 (423)
T 3lvm_A          233 GALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDI  303 (423)
T ss_dssp             EEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             EEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999887666543210     0124566788899999999998866  688899999999999999865

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=98.42  E-value=9.3e-07  Score=75.55  Aligned_cols=126  Identities=13%  Similarity=0.059  Sum_probs=90.1

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHH----HH--------HHhCCccccccchhhhhcCCCCCCchhc--ccccccC
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVY----KH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGN  155 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~----~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~  155 (224)
                      +++++|++++.+...|.+.+.++..+.++    +.        +++ +|.+..   ...  .  ..+|+++  ++|.+.|
T Consensus       153 ~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~~---~~~--~--~~~d~~~~s~~K~~~~  224 (390)
T 1elu_A          153 PKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLPL---DFS--R--LEVDYYAFTGHKWFAG  224 (390)
T ss_dssp             TTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTT-BTTBCC---CTT--T--SCCSEEEEESSSTTCC
T ss_pred             CCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccc-cCCcCC---Chh--h--cCCCEEEccccccccC
Confidence            36889999999998998888666666666    44        433 443321   111  1  4589887  9998888


Q ss_pred             CcccccceecHHHHHhhhcCCc--------------------ccccCCCCcHHHHHHHHHHHHHHhhh----hHHHHHHH
Q psy6205         156 GHPVAAVITTKEIAKSFQETGV--------------------EYFNTYGGNPVSCAVANAVMEVLETE----NLREHALD  211 (224)
Q Consensus       156 G~p~~av~~~~~i~~~~~~~~~--------------------~~~~T~~~~p~~~aaa~a~l~~~~~~----~l~~~~~~  211 (224)
                      |..+|++++++++++.+.....                    ....+.+.|+++++++.++|+.++++    .+.++.++
T Consensus       225 ~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~  304 (390)
T 1elu_A          225 PAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQ  304 (390)
T ss_dssp             CTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            8889999999998887653210                    01123456888899999999988654    37788889


Q ss_pred             HHHHHHHhhhhc
Q psy6205         212 VGNQLHTPKKEN  223 (224)
Q Consensus       212 ~g~~l~~~l~~l  223 (224)
                      +.+++.+.|+++
T Consensus       305 ~~~~l~~~L~~~  316 (390)
T 1elu_A          305 RSEFLWRGLNQL  316 (390)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhc
Confidence            999999998765

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=98.39  E-value=1.2e-06  Score=74.27  Aligned_cols=124  Identities=13%  Similarity=0.003  Sum_probs=83.7

Q ss_pred             ceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchh---ccccccc-C
Q psy6205          92 PCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIV---TVGKPMG-N  155 (224)
Q Consensus        92 iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~---~~~K~l~-~  155 (224)
                      ..+|+++..+...|.+. +.+.++++.++            ++++|.+.+. .......+  ..++++   +++|.++ .
T Consensus       145 ~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~--~~~~~i~~~s~sK~~~~~  220 (361)
T 3ftb_A          145 VDSVIIGNPNNPNGGLI-NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPS-SSFVGEIK--NYSCLFIIRAMTKFFAMP  220 (361)
T ss_dssp             CSEEEEETTBTTTTBCC-CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTT-SSSGGGTT--TCSSEEEEEESSSTTSCG
T ss_pred             CCEEEEeCCCCCCCCCC-CHHHHHHHHHHhhhcCCEEEEECcchhhcCCcc-cchhHhcc--cCCCEEEEeeChhhcCCC
Confidence            44555544466677655 55557777765            7777765421 22233333  334444   6899998 7


Q ss_pred             Ccccccce-ecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         156 GHPVAAVI-TTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       156 G~p~~av~-~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+++|+++ .++++++.+...    ..+|+.|+++++++.++|+.-+ -++..++.+++.+++.+.|+++
T Consensus       221 G~r~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  286 (361)
T 3ftb_A          221 GIRFGYGITNNKEIAAKIKAK----QNPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKI  286 (361)
T ss_dssp             GGCCEEEEESCHHHHHHHHTT----SCTTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CcceeEEEeCCHHHHHHHHhh----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            89999998 899999988643    3478999999999999987421 1345666777778888877764

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=98.38  E-value=9.9e-07  Score=76.57  Aligned_cols=119  Identities=13%  Similarity=-0.014  Sum_probs=82.2

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhc--ccccccC-C-c
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGN-G-H  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~-G-~  157 (224)
                      +++++|++|+++...|.+.+-++..+.+++.        +++.    +   +..+..+  ..+|+++  ++|.+++ | +
T Consensus       150 ~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~----~---~~~~~~~--~~~di~~~S~sK~lg~~g~~  220 (392)
T 3qhx_A          150 PTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFAS----P---ALQQPLS--LGADVVLHSTTKYIGGHSDV  220 (392)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTC----T---TTCCGGG--GTCSEEEEETTTTTTCSSCC
T ss_pred             CCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcc----c---ccCChHH--hCCcEEEEcCccccCCCCCc
Confidence            4789999999999999988766666666665        5431    1   2223333  5589988  9999997 4 6


Q ss_pred             ccccceec-HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         158 PVAAVITT-KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       158 p~~av~~~-~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      ..|+++++ +++.+.+...  ....++..+|+.+++++..++.+..  ..++..++.+++.+.|+
T Consensus       221 ~~G~v~~~~~~~~~~l~~~--~~~~g~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~l~~~L~  281 (392)
T 3qhx_A          221 VGGALVTNDEELDQSFAFL--QNGAGAVPGPFDAYLTMRGLKTLVL--RMQRHSENAAAVAEFLA  281 (392)
T ss_dssp             CCEEEEESCHHHHHHHHHH--HHHHCCCCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEECcHHHHHHHHHH--HHhcCCCCCHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHh
Confidence            78888887 6888877543  3346788999999999998887643  23444444455555444

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=98.33  E-value=4.7e-06  Score=70.85  Aligned_cols=136  Identities=10%  Similarity=0.077  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +++|++.++.     +++.+|++++.+...|.+.+.++..+.+++.        +++ +|...   +....    ..+|+
T Consensus       116 ~~~l~~~i~~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~----~~~d~  182 (384)
T 3zrp_A          116 PGEVEEEVRK-----SEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSS-VGAEE---VKAEE----WNVDV  182 (384)
T ss_dssp             HHHHHHHHHH-----SCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTT-TTTSC---CCTTT----TTCSE
T ss_pred             HHHHHHHHHh-----CCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECccc-ccCcc---ccccc----cCCCE
Confidence            4566666652     3578999999999999888744444444443        322 21110   11111    23788


Q ss_pred             hccc--ccccCCcccccceecHHHHHhh-hcCC---------------cc----cccCC-CCcHHHHHHHHHHHHHHhhh
Q psy6205         147 VTVG--KPMGNGHPVAAVITTKEIAKSF-QETG---------------VE----YFNTY-GGNPVSCAVANAVMEVLETE  203 (224)
Q Consensus       147 ~~~~--K~l~~G~p~~av~~~~~i~~~~-~~~~---------------~~----~~~T~-~~~p~~~aaa~a~l~~~~~~  203 (224)
                      ++++  |.++++.++|++++++++++.+ ....               ..    ....+ +.|+.++++..++++.+++.
T Consensus       183 ~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~  262 (384)
T 3zrp_A          183 YLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKE  262 (384)
T ss_dssp             EEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhc
Confidence            8765  9998877899999999998877 2100               00    12233 45777888888999988653


Q ss_pred             ---hHHHHHHHHHHHHHHhhhhc
Q psy6205         204 ---NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       204 ---~l~~~~~~~g~~l~~~l~~l  223 (224)
                         .+.++++++.+++.+.|+++
T Consensus       263 ~~~~~~~~~~~~~~~l~~~L~~~  285 (384)
T 3zrp_A          263 GIENRIKRHTMVASAIRAGLEAL  285 (384)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHC
Confidence               78888999999999999865

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=98.31  E-value=7.5e-06  Score=70.53  Aligned_cols=136  Identities=13%  Similarity=0.020  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +++|++.++.     +++.+|+++..+...|.+.+.++..+.+++.        +++ +|..   .+....+    .+|+
T Consensus       125 ~~~l~~~i~~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~-~~~~---~~~~~~~----~~d~  191 (416)
T 3isl_A          125 PEDIIREIKK-----VKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVAT-IGGC---EVKVDEW----KIDA  191 (416)
T ss_dssp             HHHHHHHHHH-----HCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTT-TTTS---CCCTTTT----TCSE
T ss_pred             HHHHHHHHhh-----CCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCcc-ccCC---Ccchhhc----CCCE
Confidence            4556666642     2568999999999999988877777777766        322 2211   1112222    3677


Q ss_pred             hcc--cccccCCcccccceecHHHHHhhhcCC------------------------------------cccccCCCCcHH
Q psy6205         147 VTV--GKPMGNGHPVAAVITTKEIAKSFQETG------------------------------------VEYFNTYGGNPV  188 (224)
Q Consensus       147 ~~~--~K~l~~G~p~~av~~~~~i~~~~~~~~------------------------------------~~~~~T~~~~p~  188 (224)
                      +++  +|.+.++.++|++++++++++.+....                                    .....+.+.|+.
T Consensus       192 ~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (416)
T 3isl_A          192 AIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATT  271 (416)
T ss_dssp             EECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHH
T ss_pred             EEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHH
Confidence            764  599888788999999999988775310                                    011123456788


Q ss_pred             HHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHhhhhc
Q psy6205         189 SCAVANAVMEVLETE---NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       189 ~~aaa~a~l~~~~~~---~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++++..++++.+++.   ++.++.+++.+++.+.|+++
T Consensus       272 ~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~  309 (416)
T 3isl_A          272 MLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM  309 (416)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            888888999988654   78888999999999999865

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=98.30  E-value=4.1e-06  Score=72.21  Aligned_cols=125  Identities=13%  Similarity=0.062  Sum_probs=84.5

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPV  159 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~  159 (224)
                      +++++|++++.+...|.+.+.++..+.+++.        +++ +|...   +....++    +|+++++  |.+| +..+
T Consensus       168 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~-~~~~~---~~~~~~~----~di~~~s~sK~~~-~~g~  238 (420)
T 1t3i_A          168 EKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQS-APHYP---LDVQLID----CDWLVASGHKMCA-PTGI  238 (420)
T ss_dssp             TTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTT-TTTSC---CCHHHHT----CSEEEEEGGGTTS-CTTC
T ss_pred             CCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhc-cCCcc---CchhhcC----CCEEEEehhhhcC-CCce
Confidence            3678999999999899888855555555554        333 33221   1233333    7998876  9554 3348


Q ss_pred             ccceecHHHHHhhhcCCcc------------------cccCCCCcHHHHHHHHH-HHHHHhh---hhHHHHHHHHHHHHH
Q psy6205         160 AAVITTKEIAKSFQETGVE------------------YFNTYGGNPVSCAVANA-VMEVLET---ENLREHALDVGNQLH  217 (224)
Q Consensus       160 ~av~~~~~i~~~~~~~~~~------------------~~~T~~~~p~~~aaa~a-~l~~~~~---~~l~~~~~~~g~~l~  217 (224)
                      |++++++++++.+......                  ..++++.++++++++++ +|+.+++   +++.++.+++.+++.
T Consensus       239 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~  318 (420)
T 1t3i_A          239 GFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLW  318 (420)
T ss_dssp             EEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            9999999999887543110                  11234566777766665 7888865   578888999999999


Q ss_pred             Hhhhhc
Q psy6205         218 TPKKEN  223 (224)
Q Consensus       218 ~~l~~l  223 (224)
                      +.|+++
T Consensus       319 ~~L~~~  324 (420)
T 1t3i_A          319 QGLGQI  324 (420)
T ss_dssp             HHHHTC
T ss_pred             HHHHhC
Confidence            999865

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=98.29  E-value=6.5e-06  Score=72.44  Aligned_cols=141  Identities=18%  Similarity=0.171  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-HHhCCc------cc--cccchhh----hhcCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-VQVGFG------RV--GTHWWAF----QLQGDD  141 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-v~tG~G------rt--G~~~~~~----~~~g~~  141 (224)
                      +++|++.+...  ..+++++|++|++++..|-.+++.++++++.++ -+.|.-      +.  |. .|..    .+.+  
T Consensus       169 ~~~le~~i~~~--~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~-~~~~~~~~~~~~--  243 (467)
T 1ax4_A          169 IKKLKENIAQH--GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENA-YFIKARDPKYKN--  243 (467)
T ss_dssp             HHHHHHHHHHH--CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHH-HHHHHHCGGGTT--
T ss_pred             HHHHHHHHHhc--CCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcc-hhccccccccCC--
Confidence            56777777632  124789999999998875577888999999998 111110      00  00 0111    2233  


Q ss_pred             CC-----------Cchh--cccccccCCccccccee-c-H-HHHHhhhcCCc--ccccCCCCcHHHHHHHHH-HHHHHhh
Q psy6205         142 II-----------PDIV--TVGKPMGNGHPVAAVIT-T-K-EIAKSFQETGV--EYFNTYGGNPVSCAVANA-VMEVLET  202 (224)
Q Consensus       142 v~-----------pDi~--~~~K~l~~G~p~~av~~-~-~-~i~~~~~~~~~--~~~~T~~~~p~~~aaa~a-~l~~~~~  202 (224)
                      +.           +|++  +++|.+  |.|+|++++ + + ++++.+.....  ....++++++..+.++.+ +|+.+.+
T Consensus       244 ~~~~~~~~~~~~~~d~~~~s~sK~~--g~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  321 (467)
T 1ax4_A          244 ATIKEVIFDMYKYADALTMSAKKDP--LLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE  321 (467)
T ss_dssp             CCHHHHHHHHGGGCSEEEEETTSTT--CCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC
T ss_pred             CchhhhhhhhccccceEEEeccccC--CCCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh
Confidence            31           5665  456654  567766554 5 5 78776643100  112467777766555444 6776655


Q ss_pred             hhHHHHHHHHHHHHHHhhhh
Q psy6205         203 ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       203 ~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ++..++..++.++|.+.|++
T Consensus       322 ~~~~~~~~~~~~~l~~~L~~  341 (467)
T 1ax4_A          322 EEYLHYRIGQVKYLGDRLRE  341 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHh
Confidence            55666667888889888875

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=98.29  E-value=8.5e-06  Score=69.71  Aligned_cols=137  Identities=12%  Similarity=0.058  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +++|++.++.    ..++.+|++++.+...|.+.+.++..+.+++.        +++ +|...   +..+.+    .+|+
T Consensus       122 ~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~----~~d~  189 (392)
T 2z9v_A          122 PQAVADMLKA----HPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSS-FGGMK---THPEDC----KADI  189 (392)
T ss_dssp             HHHHHHHHHH----CTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTT-BTTBS---CCGGGG----TCSE
T ss_pred             HHHHHHHHhc----CCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccc-cCCcc---cccccc----cceE
Confidence            4566666642    23577899999998888888766555555555        433 33221   122223    3788


Q ss_pred             hcc--cccccCCcccccceecHHHHHhhhcCC------------------cccccCCCCcHHHHHHHHHHHHHHhhh---
Q psy6205         147 VTV--GKPMGNGHPVAAVITTKEIAKSFQETG------------------VEYFNTYGGNPVSCAVANAVMEVLETE---  203 (224)
Q Consensus       147 ~~~--~K~l~~G~p~~av~~~~~i~~~~~~~~------------------~~~~~T~~~~p~~~aaa~a~l~~~~~~---  203 (224)
                      ++.  +|.++++..+|++++++++++.+....                  .....+.+.|+.+++++.++|+.+++.   
T Consensus       190 ~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~  269 (392)
T 2z9v_A          190 YVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPE  269 (392)
T ss_dssp             EEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             EEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHH
Confidence            764  699987666799999999988774210                  001124456788888888999988653   


Q ss_pred             hHHHHHHHHHHHHHHhhhhc
Q psy6205         204 NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       204 ~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++.++.+++.+++.+.|+++
T Consensus       270 ~~~~~~~~~~~~l~~~L~~~  289 (392)
T 2z9v_A          270 AVWARHALTAKAMRAGVTAM  289 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            57888999999999998764

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=98.27  E-value=1.3e-06  Score=76.27  Aligned_cols=121  Identities=12%  Similarity=-0.074  Sum_probs=76.4

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhcccccccCC-cccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG-HPVA  160 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G-~p~~  160 (224)
                      +++++|++|++++..|.+.+.++..+.+++.        +++    ++. ++....+|  ..+.+.+++|.++|+ .+++
T Consensus       151 ~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~----~~~-~~~~~~~g--~div~~S~sK~l~g~g~~~g  223 (400)
T 3nmy_A          151 ADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFA----SPM-LQRPLSLG--ADLVVHSATKYLNGHSDMVG  223 (400)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT----HHH-HCCGGGGT--CSEEEEETTTTTTCSSSCCC
T ss_pred             cCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCc----ccc-cCChhhcC--CcEEEecCccccCCCCCcce
Confidence            4689999999999999988755555555554        322    221 22222344  334444599999975 6766


Q ss_pred             c--c-eecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         161 A--V-ITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       161 a--v-~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +  + ..++++.+.+...  ....++..+|+.+++++..|+.+..  ..++..++.+++.+.|+
T Consensus       224 G~~vv~~~~~~~~~l~~~--~~~~g~~~~~~~a~~~l~~l~~l~~--r~~~~~~~a~~l~~~L~  283 (400)
T 3nmy_A          224 GIAVVGDNAELAEQMAFL--QNSIGGVQGPFDSFLALRGLKTLPL--RMRAHCENALALAQWLE  283 (400)
T ss_dssp             EEEEECSCHHHHHHHHHH--HHHHCCBCCHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHT
T ss_pred             eEEEEeCCHHHHHHHHHH--HHhcCCCCCHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHHHHH
Confidence            5  3 3477888877543  3345778899999999998887743  23344444444544444

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=98.25  E-value=3.7e-06  Score=72.09  Aligned_cols=125  Identities=11%  Similarity=0.045  Sum_probs=84.2

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchh--cccccccCCccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGNGHPV  159 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~G~p~  159 (224)
                      +++++|++++++...|.+.+.++..+.+++.        +++ +|+..   +....+    .+|++  +++|.+|. ..+
T Consensus       163 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~-~g~~~---~~~~~~----~~d~~~~s~~K~~g~-~G~  233 (406)
T 1kmj_A          163 EKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQA-VMHHP---VDVQAL----DCDFYVFSGHKLYGP-TGI  233 (406)
T ss_dssp             TTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTT-TTTSC---CCHHHH----TCSEEEEEGGGTTSC-TTC
T ss_pred             cCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhh-cCCCC---Cccccc----CCCEEEEEchhccCC-CCc
Confidence            3678999999999999888855555555554        543 33321   122223    38887  49999842 237


Q ss_pred             ccceecHHHHHhhhcCCcc-------------------cccCCCCcHHHHHHHH-HHHHHHhh---hhHHHHHHHHHHHH
Q psy6205         160 AAVITTKEIAKSFQETGVE-------------------YFNTYGGNPVSCAVAN-AVMEVLET---ENLREHALDVGNQL  216 (224)
Q Consensus       160 ~av~~~~~i~~~~~~~~~~-------------------~~~T~~~~p~~~aaa~-a~l~~~~~---~~l~~~~~~~g~~l  216 (224)
                      |++++++++++.+......                   ...+++.+++++++++ ++++.+++   +++.++++++.+++
T Consensus       234 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l  313 (406)
T 1kmj_A          234 GILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYA  313 (406)
T ss_dssp             EEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             EEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            9999999999887532100                   1123445666666666 88998865   37788899999999


Q ss_pred             HHhhhhc
Q psy6205         217 HTPKKEN  223 (224)
Q Consensus       217 ~~~l~~l  223 (224)
                      .+.|+++
T Consensus       314 ~~~L~~~  320 (406)
T 1kmj_A          314 LSQLESV  320 (406)
T ss_dssp             HHHHTTS
T ss_pred             HHHHhcC
Confidence            9999865

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=98.24  E-value=3.2e-06  Score=75.76  Aligned_cols=132  Identities=13%  Similarity=0.076  Sum_probs=83.6

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCC-----ccccc--cchhhhhcCCCCCCchhccccccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGF-----GRVGT--HWWAFQLQGDDIIPDIVTVGKPMG  154 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~-----GrtG~--~~~~~~~~g~~v~pDi~~~~K~l~  154 (224)
                      +++++|+++..+...|.+.+.++..+.+++.        +++||     +++|.  ..+.+...|  +......++|.+.
T Consensus       238 ~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g--~d~~~~s~~K~l~  315 (514)
T 3mad_A          238 PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEG--VTSVSADTHKYGY  315 (514)
T ss_dssp             TTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTT--CCEEEECTTTTTC
T ss_pred             cCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCC--CcEEEECchhccC
Confidence            3678999999998899988866666666665        55554     34442  023444555  5333345669988


Q ss_pred             CCcccccceecHHHHHhhhcC-------Cc-----ccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         155 NGHPVAAVITTKEIAKSFQET-------GV-----EYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       155 ~G~p~~av~~~~~i~~~~~~~-------~~-----~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +|+++|+++++++........       +.     ..++++..+++++.+++..+....-+++.+++.++.++|.+.|++
T Consensus       316 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~  395 (514)
T 3mad_A          316 GAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRA  395 (514)
T ss_dssp             CCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888999999988776543210       00     011233333455555555554433357888999999999999987


Q ss_pred             c
Q psy6205         223 N  223 (224)
Q Consensus       223 l  223 (224)
                      +
T Consensus       396 ~  396 (514)
T 3mad_A          396 I  396 (514)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=98.22  E-value=2.5e-06  Score=73.93  Aligned_cols=128  Identities=10%  Similarity=0.002  Sum_probs=82.7

Q ss_pred             ceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccc----cchhhhhcCCCCCCc---hhccccc
Q psy6205          92 PCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGT----HWWAFQLQGDDIIPD---IVTVGKP  152 (224)
Q Consensus        92 iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~----~~~~~~~~g~~v~pD---i~~~~K~  152 (224)
                      .+.++++| ....|.+ .++++++++.++            ++++|.+.|.    .+.....+.  ..++   +.+++|.
T Consensus       179 ~~v~i~~p-~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~--~~~~~i~~~s~sK~  254 (416)
T 1bw0_A          179 KLLIVTNP-SNPCGSN-FSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFE--TTVPRVILGGTAKN  254 (416)
T ss_dssp             EEEEEESS-CTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSC--CSCCEEEEEESTTT
T ss_pred             eEEEEeCC-CCCCCcc-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHcc--CCCcEEEEecchhh
Confidence            34556666 5556765 567788887776            7777765553    122222222  2222   2378999


Q ss_pred             cc-CCcccccceecHH--HHHhhhcCCc-ccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhhhc
Q psy6205         153 MG-NGHPVAAVITTKE--IAKSFQETGV-EYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       153 l~-~G~p~~av~~~~~--i~~~~~~~~~-~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++ .|+++|+++++++  +++.+..... ....|++.|+++++++.++|+.+.+   ++..++++++.+++.+.|+++
T Consensus       255 ~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  332 (416)
T 1bw0_A          255 LVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGEC  332 (416)
T ss_dssp             TSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            86 5899999998763  4443331100 1225788999999999999985432   356777888899999988764

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=98.21  E-value=1e-05  Score=71.00  Aligned_cols=141  Identities=19%  Similarity=0.117  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEc-cccCCCCcccCCHHHHHHHHHH------------HHhC----------Ccccccc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAE-SLQSCGGQIIPPANYLREVYKH------------VQVG----------FGRVGTH  131 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~E-pv~~~~G~~~~~~~~l~~~~~~------------v~tG----------~GrtG~~  131 (224)
                      +++|++.+..-  ....+++|+++ |..+..|. ..++++++++.++            +++.          +.+.|. 
T Consensus       160 ~~~l~~~i~~~--t~~~~~~v~l~~p~n~ptG~-~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~-  235 (456)
T 2ez2_A          160 LKKLQKLIDEK--GAENIAYICLAVTVNLAGGQ-PVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENK-  235 (456)
T ss_dssp             HHHHHHHHHHH--CGGGEEEEEEESSBTTTTSB-CCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTS-
T ss_pred             HHHHHHHHHhc--cccceeEEEEeccCCCCCCc-cCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCc-
Confidence            46677666531  22457899999 66667784 6778888888888            5442          445554 


Q ss_pred             chh-h-hhcCCCCCCchhccc-ccccCCcc-ccccee-cHHHHHhhhcCCc--ccccCCCC-cHHHHHH-HHHHHHHHhh
Q psy6205         132 WWA-F-QLQGDDIIPDIVTVG-KPMGNGHP-VAAVIT-TKEIAKSFQETGV--EYFNTYGG-NPVSCAV-ANAVMEVLET  202 (224)
Q Consensus       132 ~~~-~-~~~g~~v~pDi~~~~-K~l~~G~p-~~av~~-~~~i~~~~~~~~~--~~~~T~~~-~p~~~aa-a~a~l~~~~~  202 (224)
                      .+. . +..+  ..+|++++| |.+++ .| .|++++ ++++++.+.....  ...+|+.+ ++..+++ +.+.++.++ 
T Consensus       236 ~~~~~~~~~~--~~~d~~~~S~kk~~~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-  311 (456)
T 2ez2_A          236 SIAEIVHEMF--SYADGCTMSGKKDCL-VNIGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-  311 (456)
T ss_dssp             CHHHHHHHHH--TTCSEEEEETTTTTC-CSSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-
T ss_pred             chhhhhhhhc--ccCCEEEEeCcccCC-CCceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-
Confidence            221 1 1233  458998884 76754 34 566666 5888776643100  01123333 4445455 666666654 


Q ss_pred             hhHHHHHHHHHHHHHHhhhhc
Q psy6205         203 ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       203 ~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++.++.+++.+++.+.|+++
T Consensus       312 ~~~~~~~~~~~~~l~~~L~~~  332 (456)
T 2ez2_A          312 YEYIEHRVKQVRYLGDKLKAA  332 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhcC
Confidence            567888889999999988764

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=98.19  E-value=5.1e-06  Score=71.83  Aligned_cols=117  Identities=13%  Similarity=0.035  Sum_probs=76.5

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch--hcccccccC-Ccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI--VTVGKPMGN-GHP  158 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi--~~~~K~l~~-G~p  158 (224)
                      +++++|++|+.....|.+.+.++..+.+++.        ++. .+..+.    ...++    +|+  .+++|.+++ |.+
T Consensus       148 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~-~~~~~~----~~~~~----~di~~~s~sK~~~~~g~~  218 (398)
T 2rfv_A          148 PETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFM-SPYCQQ----PLQLG----ADIVVHSVTKYINGHGDV  218 (398)
T ss_dssp             TTEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTT-CTTTCC----GGGGT----CSEEEEETTTTTTCSSCC
T ss_pred             CCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCc-ccccCC----chhhC----CcEEEEeCcccccCCCCc
Confidence            3678999999999999888755555555554        433 112221    11233    565  579999986 688


Q ss_pred             c-ccceecHHHHH-hhhcCCccccc-CCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q psy6205         159 V-AAVITTKEIAK-SFQETGVEYFN-TYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLH  217 (224)
Q Consensus       159 ~-~av~~~~~i~~-~~~~~~~~~~~-T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~  217 (224)
                      + |++++++++++ .+...  .... +++.+|++++++.++|+.+.+  +.+.++.+.+.++|+
T Consensus       219 ~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~  280 (398)
T 2rfv_A          219 IGGIIVGKQEFIDQARFVG--LKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLE  280 (398)
T ss_dssp             CCEEEEECHHHHHHHHHTH--HHHTTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEECHHHHHHHHHHH--HHhCCCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            8 99999999887 44421  2334 678899999999999987632  234444545554444

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=98.18  E-value=2.7e-06  Score=73.70  Aligned_cols=120  Identities=12%  Similarity=-0.014  Sum_probs=75.1

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhcccccccC-Cccc-
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGN-GHPV-  159 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~-G~p~-  159 (224)
                      +++++|++|++....|.+.+-++..+.+++.        +++.+ ..+.    ...++  ....+.+++|.+++ |.++ 
T Consensus       149 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~-~~~~----~~~~~--~d~~~~S~sK~~~~~~~~~~  221 (398)
T 1gc0_A          149 PATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTP-YLQR----PLELG--ADLVVHSATKYLSGHGDITA  221 (398)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHH-HHCC----GGGGT--CSEEEEETTTTTTCSSSCCC
T ss_pred             CCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCccc-ccCC----chhhC--ceEEEECCccccCCCCCCeE
Confidence            3688999999999889888644444444443        43321 2221    11234  44444579999996 4787 


Q ss_pred             ccceecHHHHH-hhhcCCcccc-cCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHH
Q psy6205         160 AAVITTKEIAK-SFQETGVEYF-NTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHT  218 (224)
Q Consensus       160 ~av~~~~~i~~-~~~~~~~~~~-~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~  218 (224)
                      |++++++++.+ .+...  ... .+...||+++++++++|+.+..  +...++.+.+.++|.+
T Consensus       222 G~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~  282 (398)
T 1gc0_A          222 GIVVGSQALVDRIRLQG--LKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLAR  282 (398)
T ss_dssp             EEEEECHHHHHHHHHTH--HHHHTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEChHHHHHHHHHH--hhccCCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhc
Confidence            88888988765 34321  223 4667899999999999887632  3444455555555443

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=98.16  E-value=5.3e-06  Score=72.59  Aligned_cols=123  Identities=17%  Similarity=0.050  Sum_probs=79.5

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchh--cccccccC-Ccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN-GHP  158 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~-G~p  158 (224)
                      +++++|++|++++..|.+.+-++..+.+++.        +++++|..+. .+     +  ..+|++  +++|.+++ |.+
T Consensus       143 ~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~-~~-----~--~~~Di~~~s~~K~l~~~g~~  214 (421)
T 2ctz_A          143 EKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLR-PL-----A--WGAALVTHSLTKWVGGHGAV  214 (421)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCC-GG-----G--GTCSEEEEETTTTTTCSSCC
T ss_pred             cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccCC-cc-----c--cCCeEEEECCcccccCCCCc
Confidence            3688999999999999988866666666665        7766776554 22     2  448998  78999997 578


Q ss_pred             cccceecH---HH----HHhhhcC-----Cc-------------------ccccCCCCcHHHHHHHHHHHHHHhhhhHHH
Q psy6205         159 VAAVITTK---EI----AKSFQET-----GV-------------------EYFNTYGGNPVSCAVANAVMEVLETENLRE  207 (224)
Q Consensus       159 ~~av~~~~---~i----~~~~~~~-----~~-------------------~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~  207 (224)
                      +|++++++   ++    .+.+...     +.                   ........+|+.+++++..|+.+.+  ..+
T Consensus       215 ~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~--r~~  292 (421)
T 2ctz_A          215 IAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSL--RAE  292 (421)
T ss_dssp             CCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHH--HHH
T ss_pred             EEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHH--HHH
Confidence            88887741   11    1222211     00                   0112347799999999999888742  233


Q ss_pred             HHHHHHHHHHHhhhh
Q psy6205         208 HALDVGNQLHTPKKE  222 (224)
Q Consensus       208 ~~~~~g~~l~~~l~~  222 (224)
                      +..++.+++.+.|++
T Consensus       293 ~~~~~a~~l~~~L~~  307 (421)
T 2ctz_A          293 RHVENTLHLAHWLLE  307 (421)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHhHHHHHHHHHh
Confidence            334555566665554

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=98.15  E-value=5.5e-06  Score=70.36  Aligned_cols=127  Identities=17%  Similarity=0.086  Sum_probs=84.0

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH-----------HHhCCc---cccccchhh---hhcCCCCCCchhccccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH-----------VQVGFG---RVGTHWWAF---QLQGDDIIPDIVTVGKP  152 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----------v~tG~G---rtG~~~~~~---~~~g~~v~pDi~~~~K~  152 (224)
                      +++.+|+++..+...|.+.+.+ .++++.++           ++.+|.   ..+......   ..++  ....+.+++|.
T Consensus       152 ~~~~~v~~~~p~nptG~~~~~~-~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~s~sK~  228 (365)
T 3get_A          152 DEIKLIFLCLPNNPLGECLDAS-EATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFD--NVLYLGTFSKL  228 (365)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHH-HHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCT--TEEEEEESSST
T ss_pred             CCCCEEEEcCCCCCCCCCcCHH-HHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCC--CEEEEeecchH
Confidence            4677888876666678766544 45555553           555443   222101111   1222  33334479999


Q ss_pred             cc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         153 MG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       153 l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +| .|+++|++++++++.+.+...    ..+|+.|+++++++.++|+..+ -++..++.+++.+++.+.|+++
T Consensus       229 ~~~~G~r~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  297 (365)
T 3get_A          229 YGLGGLRIGYGIANANIISAFYKL----RAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH  297 (365)
T ss_dssp             TSCTTTCCEEEEECHHHHHHHHHH----SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCcchheEEEEcCHHHHHHHHHh----cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            98 789999999999999888642    3467799999999999988532 2356677777888888888764

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=98.14  E-value=1.4e-05  Score=68.69  Aligned_cols=124  Identities=14%  Similarity=-0.016  Sum_probs=86.9

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhc--ccccccCCccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGNGHPV  159 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~G~p~  159 (224)
                      +++.+|+++.++...|.+.+.++..+.+++.        ++. +|...   +..+.++    +|+++  ++|.+|.+  +
T Consensus       164 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~~----~d~~~~s~~K~~g~~--~  233 (406)
T 3cai_A          164 KSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAA-APYRL---LDIRETD----ADVVTVNAHAWGGPP--I  233 (406)
T ss_dssp             TTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTT-TTTCC---CCHHHHC----CSEEEEEGGGGTSCS--C
T ss_pred             CCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccc-cCCCC---CCchhcC----CCEEEeehhhhcCCC--c
Confidence            3678999999999999998877777777776        433 22211   2333444    68775  57976543  8


Q ss_pred             c-cceecHHHHHhhhcCCccc-------ccCCCCcHHHHHHHHHHHHHHhh-----------------hhHHHHHHHHHH
Q psy6205         160 A-AVITTKEIAKSFQETGVEY-------FNTYGGNPVSCAVANAVMEVLET-----------------ENLREHALDVGN  214 (224)
Q Consensus       160 ~-av~~~~~i~~~~~~~~~~~-------~~T~~~~p~~~aaa~a~l~~~~~-----------------~~l~~~~~~~g~  214 (224)
                      | ++++++++.+.+......+       ..+.+.|+.+++++.++|+.+++                 +++.++++++.+
T Consensus       234 G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (406)
T 3cai_A          234 GAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFD  313 (406)
T ss_dssp             EEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHH
Confidence            8 8999999988775431100       12345688888888899998864                 467778889999


Q ss_pred             HHHHhhhhc
Q psy6205         215 QLHTPKKEN  223 (224)
Q Consensus       215 ~l~~~l~~l  223 (224)
                      +|.+.|+++
T Consensus       314 ~l~~~L~~~  322 (406)
T 3cai_A          314 YLMVSLRSL  322 (406)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcC
Confidence            999998764

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=98.13  E-value=1.5e-05  Score=69.09  Aligned_cols=115  Identities=12%  Similarity=0.016  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCC-CCcccCCHHHHHHHHHH-------------HHhC--Ccc-----ccccch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSC-GGQIIPPANYLREVYKH-------------VQVG--FGR-----VGTHWW  133 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~-~G~~~~~~~~l~~~~~~-------------v~tG--~Gr-----tG~~~~  133 (224)
                      +++|++.++    ...++.+|+++|...+ .|.+.+. +.++++.++             ++..  |..     ... ++
T Consensus       160 ~~~l~~~l~----~~~~~~~v~~~~~~~NPtG~~~~~-~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~-~~  233 (423)
T 3ez1_A          160 VDAVERLAG----TDPSVKGILFVPTYSNPGGETISL-EKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVN-FV  233 (423)
T ss_dssp             HHHHHHHHH----SCTTEEEEEECSSSCTTTCCCCCH-HHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCC-HH
T ss_pred             HHHHHHHHh----hCCCceEEEECCCCCCCCCcCCCH-HHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcc-hh
Confidence            455665553    2356888989986555 7765554 446666553             4442  211     111 22


Q ss_pred             hhh----hcCCCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH
Q psy6205         134 AFQ----LQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV  199 (224)
Q Consensus       134 ~~~----~~g~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~  199 (224)
                      ...    ..+  ....+.+++|.+..|+.+|++++++++++.+...  ....+++.++++++++.+.|+.
T Consensus       234 ~~~~~~~~~~--~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~  299 (423)
T 3ez1_A          234 VLARDAGYPD--RAFVFASTSKITFAGAGLGFVASSEDNIRWLSKY--LGAQSIGPNKVEQARHVKFLTE  299 (423)
T ss_dssp             HHHHHHTCTT--SEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHH--HHHSCSCCCHHHHHHHHHHHHH
T ss_pred             hhhhccCCCC--eEEEEeCchhhccCCcceEEEEeCHHHHHHHHHH--HhhhccCCCHHHHHHHHHHHHh
Confidence            221    111  3334668999977789999999999999988643  3446888999999998888876

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=98.11  E-value=5.8e-06  Score=72.09  Aligned_cols=129  Identities=14%  Similarity=0.065  Sum_probs=85.2

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcC--CCCCCchhccccccc-C
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQG--DDIIPDIVTVGKPMG-N  155 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g--~~v~pDi~~~~K~l~-~  155 (224)
                      ++.+|++...+...|.+. +.+.++++.++            ++++|...+. ......+.  .+....+.+++|.+| .
T Consensus       198 ~~~~v~l~~p~NPtG~~~-~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~g~~  275 (432)
T 3ei9_A          198 RTDIIFFCSPNNPTGAAA-TREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN-PRSIFEIPGAEEVAMETASFSNYAGFT  275 (432)
T ss_dssp             CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC-CSSGGGSTTGGGTEEEEEESHHHHCTT
T ss_pred             CCCEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCcEEEEccchHhhccCCC-CCChhhcCCCCCeEEEEecchhccCCc
Confidence            566777765566677654 55567777665            6676644443 22322221  012233557999998 7


Q ss_pred             CcccccceecHHH--------HHhhhcCCcccccCCCCcHHHHHHHHHHHHHH--h-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         156 GHPVAAVITTKEI--------AKSFQETGVEYFNTYGGNPVSCAVANAVMEVL--E-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       156 G~p~~av~~~~~i--------~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~--~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |+++|++++++++        .+.+...  ....+++.++++.+++.++|+..  + -+.+.++++++.++|.+.|+++
T Consensus       276 G~r~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  352 (432)
T 3ei9_A          276 GVRLGWTVIPKKLLYSDGFPVAKDFNRI--ICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL  352 (432)
T ss_dssp             TTCCEEEECCTTCBCTTSCBHHHHHHHH--HHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccceEEEEEChHHhhcchHHHHHHHHHH--hccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            8999999999887        5555432  22346678999999999988532  1 2467778888889999888765

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=98.11  E-value=6.9e-06  Score=71.04  Aligned_cols=118  Identities=12%  Similarity=-0.009  Sum_probs=79.8

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchh--cccccccCC-cc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGNG-HP  158 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~G-~p  158 (224)
                      +++++|++|+.....|.+.+.++..+.+++.        +++++ ..+      ...+  ..+|++  +++|.++++ .+
T Consensus       143 ~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~-~~~------~~~~--~~~di~~~S~sK~~~~~~~~  213 (389)
T 3acz_A          143 PNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSP-CFL------KPLE--LGADIALHSVSKYINGHGDV  213 (389)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCT-TTC------CGGG--TTCSEEEEETTTTTTCSSCC
T ss_pred             CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccc-ccc------Cccc--cCCeEEEECChhhccCCCCc
Confidence            3678999999999999888766666666665        44432 111      1222  458988  689999874 78


Q ss_pred             c-ccceecH-HHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHH
Q psy6205         159 V-AAVITTK-EIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHT  218 (224)
Q Consensus       159 ~-~av~~~~-~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~  218 (224)
                      + |++++++ ++++.+...  ....+...+|..++++++.|+.+..  +...++.+.+.++|.+
T Consensus       214 ~~G~v~~~~~~~~~~l~~~--~~~~g~~~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~  275 (389)
T 3acz_A          214 IGGVSSAKTAEDIATIKFY--RKDAGSLMAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQ  275 (389)
T ss_dssp             CCEEEEESSHHHHHHHHHH--HHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEECcHHHHHHHHHH--HHhcCCCCCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHc
Confidence            7 9999998 888877543  1113445789999999998887632  3445555555555544

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=98.10  E-value=1.2e-05  Score=67.57  Aligned_cols=123  Identities=12%  Similarity=0.185  Sum_probs=84.7

Q ss_pred             CceEEE-EccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchh-hhhcCCCCCCchhccccccc-CCccc
Q psy6205          91 RPCAFF-AESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWA-FQLQGDDIIPDIVTVGKPMG-NGHPV  159 (224)
Q Consensus        91 ~iaavi-~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~-~~~~g~~v~pDi~~~~K~l~-~G~p~  159 (224)
                      ++.+|+ ..| +...|.+. +.+.++++.+.        ++++|+. +. ... .+.++  ...++.+++|.+| .|+++
T Consensus       138 ~~~~v~l~~p-~nptG~~~-~~~~l~~l~~~~~~li~De~~~~~~~-~~-~~~~~~~~~--~~i~~~s~sK~~g~~G~r~  211 (335)
T 1uu1_A          138 EGDVVFIPNP-NNPTGHVF-EREEIERILKTGAFVALDEAYYEFHG-ES-YVDFLKKYE--NLAVIRTFSKAFSLAAQRV  211 (335)
T ss_dssp             TTEEEEEESS-CTTTCCCC-CHHHHHHHHHTTCEEEEECTTHHHHC-CC-CGGGGGTCS--SEEEEEESTTTTTCGGGCC
T ss_pred             CCCEEEEeCC-CCCCCCCC-CHHHHHHHHHhCCEEEEECcchhhcc-hh-HHHHhhhCC--CEEEEecchhhcCCcccCe
Confidence            456666 566 55567654 66677766664        5555532 12 122 12222  3345568999998 78999


Q ss_pred             ccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         160 AAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       160 ~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |++++++++++.+...    ..+|+.|+++++++.++|+..+ -+++.++++++.+++.+.|+++
T Consensus       212 G~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  272 (335)
T 1uu1_A          212 GYVVASEKFIDAYNRV----RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM  272 (335)
T ss_dssp             EEEEECHHHHHHHHHH----SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCHHHHHHHHHh----cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999887642    2467899999999999998742 3457778888888888888764

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=98.10  E-value=8.4e-06  Score=70.51  Aligned_cols=141  Identities=11%  Similarity=0.106  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCcccc---ccchhhhhcC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVG---THWWAFQLQG  139 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG---~~~~~~~~~g  139 (224)
                      +++|++.++.   ++.....+++...+...|. ..+.+.++++.++            ++.+|+..|   . ......+.
T Consensus       163 ~~~l~~~l~~---~~~~~~~~~~~~p~nPtG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~  237 (412)
T 1yaa_A          163 LNGFLNAIQK---APEGSIFVLHSCAHNPTGL-DPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKD-AYAVRLGV  237 (412)
T ss_dssp             HHHHHHHHHH---SCTTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHH-THHHHHHH
T ss_pred             HHHHHHHHHh---CCCCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccch-hHHHHHHH
Confidence            4556665542   2222333333444444665 4556667666665            777775544   2 12232211


Q ss_pred             CCCCC----c--hhcccccccC-Ccccccce--e-----cHH----HHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh
Q psy6205         140 DDIIP----D--IVTVGKPMGN-GHPVAAVI--T-----TKE----IAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE  201 (224)
Q Consensus       140 ~~v~p----D--i~~~~K~l~~-G~p~~av~--~-----~~~----i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~  201 (224)
                       ...+    +  +.+++|.+|. |+++|+++  +     +++    +.+.+...  ....+...++++++++.++|+...
T Consensus       238 -~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~  314 (412)
T 1yaa_A          238 -EKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKI--IRSEVSNPPAYGAKIVAKLLETPE  314 (412)
T ss_dssp             -HHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHH--HHTTTSSCCHHHHHHHHHHHHSHH
T ss_pred             -hcCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHH--HhhccCCCChHHHHHHHHHhCCHH
Confidence             0224    2  3378999997 89999998  7     666    77766531  112334458899999998887652


Q ss_pred             --------hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         202 --------TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       202 --------~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                              -+++.++++++.+++.+.|+++
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  344 (412)
T 1yaa_A          315 LTEQWHKDMVTMSSRITKMRHALRDHLVKL  344 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                    2456777888888898888764

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=98.09  E-value=4.5e-05  Score=65.16  Aligned_cols=136  Identities=12%  Similarity=0.085  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +++|++.++.     .++.+|+++......|.+.+.++..+.+++.        ++ ++|...   +....    ..+|+
T Consensus       133 ~~~l~~~i~~-----~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~-~~~~~~---~~~~~----~~~d~  199 (393)
T 2huf_A          133 LDEIRDALLI-----HKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVA-SLGGAP---MFMDR----WEIDA  199 (393)
T ss_dssp             HHHHHHHHHH-----HCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTT-TBTTBC---CCTTT----TTCSE
T ss_pred             HHHHHHHHhc-----cCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEccc-ccCCCC---cchhh----cCccE
Confidence            4556665542     1567889998888889988877777777776        43 344321   12222    23788


Q ss_pred             hcc--cccccCCcccccceecHHHHHhhhcCC---ccc-----------------ccC-CCCcHHHHHHHHHHHHHHhh-
Q psy6205         147 VTV--GKPMGNGHPVAAVITTKEIAKSFQETG---VEY-----------------FNT-YGGNPVSCAVANAVMEVLET-  202 (224)
Q Consensus       147 ~~~--~K~l~~G~p~~av~~~~~i~~~~~~~~---~~~-----------------~~T-~~~~p~~~aaa~a~l~~~~~-  202 (224)
                      +++  +|.++|..++|++++++++++.+....   ..+                 .++ .+.++.+.+++.++|+.+.+ 
T Consensus       200 ~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~  279 (393)
T 2huf_A          200 MYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEE  279 (393)
T ss_dssp             EECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            865  599887666699999999998875420   010                 112 23466677777789988854 


Q ss_pred             --hhHHHHHHHHHHHHHHhhhhc
Q psy6205         203 --ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       203 --~~l~~~~~~~g~~l~~~l~~l  223 (224)
                        +.+.++.+++.+++.+.|+++
T Consensus       280 ~~~~~~~~~~~~~~~l~~~L~~~  302 (393)
T 2huf_A          280 GLPALIARHEDCAKRLYRGLQDA  302 (393)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHc
Confidence              357888899999999999764

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=98.08  E-value=1.3e-05  Score=69.50  Aligned_cols=145  Identities=12%  Similarity=0.116  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEc-cccCCCCcccCCHHHHHHHHH----------H--------HHhCCcccccc--ch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAE-SLQSCGGQIIPPANYLREVYK----------H--------VQVGFGRVGTH--WW  133 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~E-pv~~~~G~~~~~~~~l~~~~~----------~--------v~tG~GrtG~~--~~  133 (224)
                      +++|++.+.... .++..++++++ |.+...|.+.+.++ ++++.+          .        +..+|++.|..  .+
T Consensus       164 ~~~l~~~l~~~~-~~~~~~~vi~~~p~~NPtG~~~~~~~-l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~  241 (418)
T 3rq1_A          164 HEAFQNRVNELA-AKQTNVVVIFNTPGNNPTGYSIEDKD-WDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAF  241 (418)
T ss_dssp             HHHHHHHHHHHH-HHCSEEEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGG
T ss_pred             HHHHHHHHHHhh-ccCCCEEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHH
Confidence            455665554311 11234467776 54777887766555 555544          2        67788776631  12


Q ss_pred             hhhhcCCCCCCch---h--ccccccc-CCccccccee---cHHHHHhhhcCCcc-c-ccCCCCcHHHHHHHHHHHHH---
Q psy6205         134 AFQLQGDDIIPDI---V--TVGKPMG-NGHPVAAVIT---TKEIAKSFQETGVE-Y-FNTYGGNPVSCAVANAVMEV---  199 (224)
Q Consensus       134 ~~~~~g~~v~pDi---~--~~~K~l~-~G~p~~av~~---~~~i~~~~~~~~~~-~-~~T~~~~p~~~aaa~a~l~~---  199 (224)
                      .....+  +.+|+   +  +++|.+| .|+++|++++   ++++++.+...... . ..++..++++.+++.+.|+.   
T Consensus       242 ~~~~~~--~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~  319 (418)
T 3rq1_A          242 FNKFSH--LPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAK  319 (418)
T ss_dssp             GGGGTT--CCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHH
T ss_pred             HHHHHh--cCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHH
Confidence            223333  66773   2  7999998 6899999999   99999887642101 1 12345788888888877743   


Q ss_pred             ---Hhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         200 ---LET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       200 ---~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                         +.+  .++.++++++.+++.+.|+++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  348 (418)
T 3rq1_A          320 FKEYEAERNCYYQLIRDRADIFKQEAAQV  348 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               211  256677888888888888764

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=98.08  E-value=1.7e-05  Score=70.39  Aligned_cols=126  Identities=17%  Similarity=0.065  Sum_probs=82.1

Q ss_pred             CCceEEEEccccCCCCcc-cCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhcc--cccccC---
Q psy6205          90 KRPCAFFAESLQSCGGQI-IPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTV--GKPMGN---  155 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~-~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~--~K~l~~---  155 (224)
                      +++++|+++.. ...|.+ .+-++..+.+++.        ++. .+.+|.  .....++    +|++++  +|.+++   
T Consensus       202 ~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~-~~~~g~--~~~~~~g----~di~~~s~~K~~~~p~g  273 (474)
T 1wyu_B          202 PHVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANL-NAIMGW--ARPGDMG----FDVVHLNLHKTFTVPHG  273 (474)
T ss_dssp             TTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGG-GGTTTT--CCHHHHT----CSEEECCTTTTTCCCCT
T ss_pred             CCceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchh-hhhccC--CCcccCC----CcEEEEeCccccccCCC
Confidence            36789999873 457776 3444444444544        332 112221  1112233    798877  898862   


Q ss_pred             --CcccccceecHHHHHhhhcC-----Ccc------------cccCCCCcHHHHHHHHHHHHHHhhhhH---HHHHHHHH
Q psy6205         156 --GHPVAAVITTKEIAKSFQET-----GVE------------YFNTYGGNPVSCAVANAVMEVLETENL---REHALDVG  213 (224)
Q Consensus       156 --G~p~~av~~~~~i~~~~~~~-----~~~------------~~~T~~~~p~~~aaa~a~l~~~~~~~l---~~~~~~~g  213 (224)
                        |.++|++++++++++.+...     +..            ...++.+|+++++++.+.|+.+..+++   .+++.++.
T Consensus       274 ~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~  353 (474)
T 1wyu_B          274 GGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNA  353 (474)
T ss_dssp             TSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              36899999999988776421     000            114556899999999999987755555   77888999


Q ss_pred             HHHHHhhhhc
Q psy6205         214 NQLHTPKKEN  223 (224)
Q Consensus       214 ~~l~~~l~~l  223 (224)
                      ++|.++|+++
T Consensus       354 ~~l~~~L~~~  363 (474)
T 1wyu_B          354 RYLKELLKEK  363 (474)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhc
Confidence            9999999764

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=98.07  E-value=1.9e-05  Score=68.12  Aligned_cols=133  Identities=20%  Similarity=0.087  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEc-cccCCCCcccCCHHHHHHHHHH--------H-HhCCccccccchhhhhcCCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAE-SLQSCGGQIIPPANYLREVYKH--------V-QVGFGRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~E-pv~~~~G~~~~~~~~l~~~~~~--------v-~tG~GrtG~~~~~~~~~g~~v~p  144 (224)
                      +++|++.+..     .++++|+++ |..+   ...+.++..+.+++.        + .+|+...|. .+..  ..   .+
T Consensus       161 ~~~l~~~i~~-----~~~~~v~~~~~~~~---~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~-~~~~--~~---~~  226 (425)
T 3ecd_A          161 YDQVEALAQQ-----HKPSLIIAGFSAYP---RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGR-HANP--VE---HA  226 (425)
T ss_dssp             HHHHHHHHHH-----HCCSEEEEECSCCC---SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTS-SCCG--GG---TC
T ss_pred             HHHHHHHHhh-----cCCcEEEEccccCC---CcCCHHHHHHHHHHcCCEEEEECcChHhhhhccc-ccCc--hh---cC
Confidence            4667666652     246788888 5553   233333444444444        5 455544453 2211  11   16


Q ss_pred             chhc--ccccccCCcccccceec-HHHHHhhhcCCcccccC-CCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHH
Q psy6205         145 DIVT--VGKPMGNGHPVAAVITT-KEIAKSFQETGVEYFNT-YGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHT  218 (224)
Q Consensus       145 Di~~--~~K~l~~G~p~~av~~~-~~i~~~~~~~~~~~~~T-~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~  218 (224)
                      |+++  ++|+++| ...|+++++ +++.+.+... .....+ ...++..++++.+..+.+++  +++.++++++.++|.+
T Consensus       227 di~~~s~sK~l~g-~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  304 (425)
T 3ecd_A          227 HVVTSTTHKTLRG-PRGGFVLTNDEEIAKKINSA-VFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGD  304 (425)
T ss_dssp             SEEEEESSGGGCC-CSCEEEEESCHHHHHHHHHH-HC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEecCCcccCC-CCcEEEEeCCHHHHHHHHhh-hCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            8775  5599954 346778887 5677766532 111112 22334455555555555544  3788999999999999


Q ss_pred             hhhhc
Q psy6205         219 PKKEN  223 (224)
Q Consensus       219 ~l~~l  223 (224)
                      .|++.
T Consensus       305 ~L~~~  309 (425)
T 3ecd_A          305 VLKAG  309 (425)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            99865

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=98.07  E-value=1.3e-05  Score=69.80  Aligned_cols=121  Identities=9%  Similarity=0.025  Sum_probs=80.5

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhc--ccccccC-Cccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGN-GHPV  159 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~-G~p~  159 (224)
                      ++.+|++|++....|.+.+-++..+.+++.        ++++++...      ....  ..+|+++  ++|.+++ |.++
T Consensus       140 ~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~------~~~~--~~~di~~~S~~K~~~~~~~~~  211 (412)
T 2cb1_A          140 KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALC------RPLA--WGAHVVVESLTKWASGHGSVL  211 (412)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSC------CGGG--GTCSEEEEETTTTTTCSSCCC
T ss_pred             CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccC------Cccc--cCCeEEEECCcccccCCCCcE
Confidence            678999999999999988766666666665        666542111      1222  4589887  9999986 5788


Q ss_pred             ccceecH----------------------------HHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy6205         160 AAVITTK----------------------------EIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALD  211 (224)
Q Consensus       160 ~av~~~~----------------------------~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~  211 (224)
                      |+++..+                            ++.+.+.... .....+..+|..++.++..++.++  ...++..+
T Consensus       212 G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~-~~~~g~~~~~~~a~~~~~~l~~l~--~~~~~~~~  288 (412)
T 2cb1_A          212 GGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLG-LSLCGMALSPFNAYLLFQGLETVA--LRVARMSE  288 (412)
T ss_dssp             CEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHH-TTTTCCCCCHHHHHHHHHHGGGHH--HHHHHHHH
T ss_pred             EEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHH-HHhcCCCCChHHhHHHHcCCchHH--HHHHHHHH
Confidence            8887654                            3333333210 011234568999999888887773  34566677


Q ss_pred             HHHHHHHhhhh
Q psy6205         212 VGNQLHTPKKE  222 (224)
Q Consensus       212 ~g~~l~~~l~~  222 (224)
                      +.++|.+.|++
T Consensus       289 ~~~~l~~~L~~  299 (412)
T 2cb1_A          289 TARFLAERLQG  299 (412)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            88888888765

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=98.06  E-value=4.4e-05  Score=65.27  Aligned_cols=136  Identities=14%  Similarity=0.105  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +++|++.++.     +++.+|+++......|.+.+.++..+.+++.        ++. +|...   +..+.    ..+|+
T Consensus       132 ~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~-~g~~~---~~~~~----~~~d~  198 (396)
T 2ch1_A          132 LETLARAIEL-----HQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVAS-LCGVP---FYMDK----WEIDA  198 (396)
T ss_dssp             HHHHHHHHHH-----HCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTT-BTTBC---CCTTT----TTCCE
T ss_pred             HHHHHHHHHh-----CCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEcccc-ccCCc---cchhh----cCcCE
Confidence            4556665542     1467889988888889888887787777776        433 44321   12222    23798


Q ss_pred             hccc--ccccCCcccccceecHHHHHhhhcCC----c-c----------------cccCCCCcHHHHHHHHHHHHHHhhh
Q psy6205         147 VTVG--KPMGNGHPVAAVITTKEIAKSFQETG----V-E----------------YFNTYGGNPVSCAVANAVMEVLETE  203 (224)
Q Consensus       147 ~~~~--K~l~~G~p~~av~~~~~i~~~~~~~~----~-~----------------~~~T~~~~p~~~aaa~a~l~~~~~~  203 (224)
                      ++.+  |.++++..+|++++++++++.+....    . .                ....++.+..+++++.++|+.+.++
T Consensus       199 ~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~  278 (396)
T 2ch1_A          199 VYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEE  278 (396)
T ss_dssp             EECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHh
Confidence            8766  99988777789999999888764310    0 0                1123446777888899999987443


Q ss_pred             ---hHHHHHHHHHHHHHHhhhhc
Q psy6205         204 ---NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       204 ---~l~~~~~~~g~~l~~~l~~l  223 (224)
                         ++.++.+++.+++.+.|+++
T Consensus       279 ~~~~~~~~~~~~~~~l~~~L~~~  301 (396)
T 2ch1_A          279 GLENQIKRRIECAQILYEGLGKM  301 (396)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHC
Confidence               57788889999999998764

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=98.05  E-value=1.3e-05  Score=69.79  Aligned_cols=104  Identities=10%  Similarity=-0.014  Sum_probs=71.2

Q ss_pred             CceEEEEccccCC-CCcccCCHHHHHHHHHH-------------HHh--CCccccccchhh-------hhcCCCCCCchh
Q psy6205          91 RPCAFFAESLQSC-GGQIIPPANYLREVYKH-------------VQV--GFGRVGTHWWAF-------QLQGDDIIPDIV  147 (224)
Q Consensus        91 ~iaavi~Epv~~~-~G~~~~~~~~l~~~~~~-------------v~t--G~GrtG~~~~~~-------~~~g~~v~pDi~  147 (224)
                      ++.+|++.|...+ .|. ..+.+.++++.++             ++.  +|+..|......       +..+  ...++.
T Consensus       178 ~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~  254 (422)
T 3d6k_A          178 QVKGMWTVPVFGNPTGV-TFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPN--RFWFMS  254 (422)
T ss_dssp             TEEEEEECCSSCTTTCC-CCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTT--CEEEEE
T ss_pred             CCeEEEEcCCCCCCCCC-CCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCC--cEEEEc
Confidence            5778887886555 676 4577777777664             543  465554211111       1222  456677


Q ss_pred             cccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH
Q psy6205         148 TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV  199 (224)
Q Consensus       148 ~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~  199 (224)
                      +++|.++.|+.+|++++++++++.+...  ....+++.|+++.+++.++|+.
T Consensus       255 S~SK~~~~GlriG~~~~~~~l~~~l~~~--~~~~~~~~~~~~q~a~~~~l~~  304 (422)
T 3d6k_A          255 STSKITHAGSGVSFFASSKENIEWYASH--ANVRGIGPNKLNQLAHAQFFGD  304 (422)
T ss_dssp             ESTTTSCTTSSCEEEECCHHHHHHHHHH--HHHHCSCCCHHHHHHHHHHHCS
T ss_pred             ChhhhcCcccceEEEEeCHHHHHHHHHH--HHhhcCCCCHHHHHHHHHHHhC
Confidence            8999966789999999999999888643  3346778899999988888753

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=98.04  E-value=1.8e-05  Score=68.39  Aligned_cols=141  Identities=11%  Similarity=0.140  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccc--cchhhhh-cC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGT--HWWAFQL-QG  139 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~--~~~~~~~-~g  139 (224)
                      +++|++.++.   .+++...+++..-+...|.+. +.+.++++.++            +..+|+..+.  ..+.... .+
T Consensus       170 ~~~l~~~l~~---~~~~~~~i~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~  245 (409)
T 4eu1_A          170 LAGMLECLDK---APEGSVILVHACAHNPTGVDP-THDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVD  245 (409)
T ss_dssp             HHHHHHHHHH---SCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHT
T ss_pred             HHHHHHHHHh---CCCCcEEEEECCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHh
Confidence            4556665542   333445555433344566544 55556666665            5566755441  0123332 23


Q ss_pred             CCCCCchh---ccccccc-CCcccccc---eecHH----HHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH-------h
Q psy6205         140 DDIIPDIV---TVGKPMG-NGHPVAAV---ITTKE----IAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL-------E  201 (224)
Q Consensus       140 ~~v~pDi~---~~~K~l~-~G~p~~av---~~~~~----i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~-------~  201 (224)
                        ..++++   ++||.+| .|+.+|++   +.+++    +.+.+...  ....+++.++++.+++.+.|+..       +
T Consensus       246 --~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  321 (409)
T 4eu1_A          246 --MVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALL--IRPMYNNPPLYGAWVVSSILKDPQLTALWKK  321 (409)
T ss_dssp             --TSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHH--HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             --hCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHH--HhhhcCCCChHHHHHHHHHhCCHHHHHHHHH
Confidence              557765   7999998 68999994   67777    55544321  12345666788888888888732       1


Q ss_pred             -hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         202 -TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       202 -~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                       -+...++++++.++|.+.|+++
T Consensus       322 ~~~~~~~~~~~~~~~l~~~L~~~  344 (409)
T 4eu1_A          322 ELKQMSSRIAEVRKRLVSELKAC  344 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence             2457778888888898888775

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=97.99  E-value=1.4e-05  Score=66.98  Aligned_cols=119  Identities=16%  Similarity=0.036  Sum_probs=82.4

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHH-H--------HHhCCccccccchhhhhcCCCCCCchh--cccccccC-Cc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYK-H--------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN-GH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~-~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~-G~  157 (224)
                      +++.+|++++.+...|.+.+.++..+.+++ .        +++    +|. ++....++    +|++  +++|.+++ |.
T Consensus        82 ~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~----~~~-~~~~~~~~----~d~~~~s~~K~~~~~~~  152 (331)
T 1pff_A           82 PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFA----SPI-LTNPLDLG----VDIVVHSATKYINGHTD  152 (331)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTT----HHH-HCCGGGGT----CSEEEEETTTTTSSSSS
T ss_pred             CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCc----ccc-cCChhhcC----CcEEEEECccccCCCCC
Confidence            467899999999999998886666666666 4        332    221 11111233    5655  69999986 46


Q ss_pred             c-cccceecH-HHHHhhhcCCcccc-cCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHh
Q psy6205         158 P-VAAVITTK-EIAKSFQETGVEYF-NTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHTP  219 (224)
Q Consensus       158 p-~~av~~~~-~i~~~~~~~~~~~~-~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~~  219 (224)
                      + .|++++++ ++.+.+...  ... .++..+|++++++.+.++.+.  .+.+.++++.+.+++.++
T Consensus       153 r~~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  217 (331)
T 1pff_A          153 VVAGLVCSRADIIAKVKSQG--IKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEH  217 (331)
T ss_dssp             CCCEEEEECHHHHHHHHHTC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ceEEEEEeCcHHHHHHHHHH--HHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcC
Confidence            7 78999998 998888654  333 467889999988888888763  345667777777777653

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=97.99  E-value=1.8e-05  Score=66.76  Aligned_cols=125  Identities=10%  Similarity=0.075  Sum_probs=84.5

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH----------HHhCCccccccchhhhhcC-CCCCCchhccccccc-CCcc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH----------VQVGFGRVGTHWWAFQLQG-DDIIPDIVTVGKPMG-NGHP  158 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----------v~tG~GrtG~~~~~~~~~g-~~v~pDi~~~~K~l~-~G~p  158 (224)
                      ++.+|+++..+...|.+.+.++ ++++.+.          ++..|+..+. . .....+ .+....+.+++|.++ .|+.
T Consensus       129 ~~~~v~i~~p~nptG~~~~~~~-l~~l~~~~~~~~li~Dea~~~~~~~~~-~-~~~~~~~~~~~i~~~S~sK~~~~~G~r  205 (350)
T 3fkd_A          129 NMDFCWLCNPNNPDGRLLQRTE-ILRLLNDHPDTTFVLDQSYVSFTTEEV-I-RPADIKGRKNLVMVYSFSHAYGIPGLR  205 (350)
T ss_dssp             TCSEEEEESSCTTTCCCCCHHH-HHHHHHHCTTSEEEEECTTTTSCSSCC-C-CGGGGTTCSSEEEEEESHHHHSCGGGC
T ss_pred             CCCEEEEeCCCCCcCCCCCHHH-HHHHHHhCCCCEEEEECchhhhccCcc-h-hhHHhhcCCCEEEEecCchhccCcchh
Confidence            5667777666777787776555 5555544          6677776664 2 122221 002233447999998 7899


Q ss_pred             cccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         159 VAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       159 ~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|++++++++.+.+...    ..+++.|+++++++.+.|+..+  .+.+.+.. ++.++|.+.|+++
T Consensus       206 ~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~L~~~  267 (350)
T 3fkd_A          206 IGYIVANKDFMKRVAAF----STPWAVNALAIEAAKFILIHPAQFTLPIRKWQ-RNTVDFITALNRL  267 (350)
T ss_dssp             CEEEECCHHHHHHHHTT----CCTTCSCHHHHHHHHHHHHCTTTTCCCHHHHH-HHHHHHHHHHHHS
T ss_pred             eEeEEeCHHHHHHHHHh----CCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHH-HHHHHHHHHHhcC
Confidence            99999999999988643    3577899999999999998654  23343333 7777787777654

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=97.98  E-value=1.3e-05  Score=70.27  Aligned_cols=119  Identities=13%  Similarity=-0.010  Sum_probs=74.4

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhcccccccC-C-ccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGN-G-HPV  159 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~-G-~p~  159 (224)
                      .++++|++|+.++..|.+.+.++..+.+++.        +++    +|. ++....+|  +...+.+++|.+++ | ++.
T Consensus       165 ~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~----~~~-~~~~~~~g--~div~~S~sK~l~~~G~~~~  237 (414)
T 3ndn_A          165 VPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFA----TPL-LQQGFPLG--VDVVVYSGTKHIDGQGRVLG  237 (414)
T ss_dssp             SCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT----HHH-HCCCGGGT--CSEEEEETTTTTTCSSCCCC
T ss_pred             CCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCc----ccc-cCCchhcC--CCeEeccCCccccCCCCceE
Confidence            3678999999999999887755555555554        322    332 23333455  44444558899987 7 789


Q ss_pred             ccceecHHHHH-hhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q psy6205         160 AAVITTKEIAK-SFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLH  217 (224)
Q Consensus       160 ~av~~~~~i~~-~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~  217 (224)
                      |+++++++... .+......++.  ..+|..+++++..++.+..  +...++.+.+.++|.
T Consensus       238 G~vv~~~~~~~~~l~~~~~~~g~--~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~  296 (414)
T 3ndn_A          238 GAILGDREYIDGPVQKLMRHTGP--AMSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLN  296 (414)
T ss_dssp             EEEEECHHHHTTHHHHHHHHHCC--CCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999988776 44321112222  3478888888888777643  334444444444443

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=97.98  E-value=2.1e-05  Score=69.38  Aligned_cols=137  Identities=15%  Similarity=0.150  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      .++|++.++.   +.+++++|+++.++...|.+.+.++..+.+++.        ++. +|...   .....++    .|+
T Consensus       201 ~~~l~~~i~~---~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~-~g~~~---~~~~~~~----~D~  269 (465)
T 3e9k_A          201 IEDILEVIEK---EGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHA-VGNVE---LYLHDWG----VDF  269 (465)
T ss_dssp             HHHHHHHHHH---HGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTT-TTTSC---CCHHHHT----CCE
T ss_pred             HHHHHHHHHh---cCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhh-cCCcC---CchhhcC----CCE
Confidence            4566666653   335789999999999999998866666666655        221 11111   1122233    577


Q ss_pred             hc--ccccccCC-cccccceecHHHHHhhhcCCcc---c--------c--c----------CCCCcHHHHHHHHHHHHHH
Q psy6205         147 VT--VGKPMGNG-HPVAAVITTKEIAKSFQETGVE---Y--------F--N----------TYGGNPVSCAVANAVMEVL  200 (224)
Q Consensus       147 ~~--~~K~l~~G-~p~~av~~~~~i~~~~~~~~~~---~--------~--~----------T~~~~p~~~aaa~a~l~~~  200 (224)
                      ++  +.|.+.+| ..+|++.+++++.+.+......   +        .  .          .-+.|++++++..++++.+
T Consensus       270 ~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~  349 (465)
T 3e9k_A          270 ACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIF  349 (465)
T ss_dssp             EEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred             EEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHH
Confidence            65  56999655 5789999999887765422000   0        0  0          1157889999999999998


Q ss_pred             hh---hhHHHHHHHHHHHHHHhhhh
Q psy6205         201 ET---ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       201 ~~---~~l~~~~~~~g~~l~~~l~~  222 (224)
                      ++   +++.++.+++.+++.+.|++
T Consensus       350 ~~~~~~~~~~~~~~~~~~l~~~L~~  374 (465)
T 3e9k_A          350 KQATMKALRKKSVLLTGYLEYLIKH  374 (465)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHh
Confidence            65   57888999999999998876

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=97.97  E-value=0.00012  Score=62.04  Aligned_cols=136  Identities=7%  Similarity=0.023  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH----------HHhCCccccccchhhhhcCCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH----------VQVGFGRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----------v~tG~GrtG~~~~~~~~~g~~v~p  144 (224)
                      +++|++.++.     +++.+|++++.+...|.+.+.++..+.+++.          +++ +|..   .+..+.    ..+
T Consensus       126 ~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~-~~~~---~~~~~~----~~~  192 (385)
T 2bkw_A          126 LELITEKLSQ-----NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCS-IGCE---EFEFDE----WGV  192 (385)
T ss_dssp             HHHHHHHHHH-----SCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTT-TTTS---CCCTTT----TTC
T ss_pred             HHHHHHHHhc-----CCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccc-cCCc---cccccc----cCc
Confidence            4566666642     3578899999999999888766666555553          332 2211   111222    236


Q ss_pred             chhcc--cccccCCcccccceecHHHHH-hhhc------------------CCccc----cc-CCCCcHHHHHHHHHHHH
Q psy6205         145 DIVTV--GKPMGNGHPVAAVITTKEIAK-SFQE------------------TGVEY----FN-TYGGNPVSCAVANAVME  198 (224)
Q Consensus       145 Di~~~--~K~l~~G~p~~av~~~~~i~~-~~~~------------------~~~~~----~~-T~~~~p~~~aaa~a~l~  198 (224)
                      |++++  +|.++|+..+|++++++++++ .+..                  ....+    .. .++.|+.+++++.++|+
T Consensus       193 d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~  272 (385)
T 2bkw_A          193 DFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALK  272 (385)
T ss_dssp             SEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH
T ss_pred             eEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHH
Confidence            87765  699987666799999998877 4420                  00001    01 24678889999999999


Q ss_pred             HHhhh---hHHHHHHHHHHHHHHhh-hhc
Q psy6205         199 VLETE---NLREHALDVGNQLHTPK-KEN  223 (224)
Q Consensus       199 ~~~~~---~l~~~~~~~g~~l~~~l-~~l  223 (224)
                      .+++.   .+.++.+++.++|.+.| +++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~  301 (385)
T 2bkw_A          273 EILEEGLHKRWDLHREMSDWFKDSLVNGL  301 (385)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHccHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88643   56788899999999998 764

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=97.97  E-value=2.8e-05  Score=65.95  Aligned_cols=123  Identities=18%  Similarity=0.164  Sum_probs=82.7

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH----------HHhCCccccccchhhhhcCCCCCCchhccc--ccccC-Cc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGN-GH  157 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~-G~  157 (224)
                      ++.+|++++.+...|.+.+.++..+.+++.          +++ ||...   +..+.    ..+|+++++  |.+|- | 
T Consensus       139 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~-~~~~~---~~~~~----~~~di~~~s~sK~~g~~G-  209 (384)
T 1eg5_A          139 DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQT-IGKIP---FSLEK----LEVDYASFSAHKFHGPKG-  209 (384)
T ss_dssp             TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTT-TTTSC---CCCTT----TCCSEEEEEGGGGTSCTT-
T ss_pred             CCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhh-cCCcc---cCchh----cCCCEEEecHHHhcCCCc-
Confidence            678999999888889888865555555553          332 43321   11111    348999877  97542 3 


Q ss_pred             ccccceecHHH--HHhhhcCCc-ccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEI--AKSFQETGV-EYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i--~~~~~~~~~-~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                       +|++++++++  ...+..... ....+++.|+++++++.++|+.+++  +++.++++++.++|.+.|++.
T Consensus       210 -~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~  279 (384)
T 1eg5_A          210 -VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL  279 (384)
T ss_dssp             -CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC
Confidence             7889999876  222211100 1135778899999999999998754  578888999999999998753

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=97.96  E-value=5e-05  Score=66.69  Aligned_cols=142  Identities=13%  Similarity=0.047  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhC----------Ccccccc-
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVG----------FGRVGTH-  131 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG----------~GrtG~~-  131 (224)
                      +++|++.+...  ..+++++|++|++++..|-.+++.+++++++++            .+..          .+..|.. 
T Consensus       169 ~~~Le~~i~~~--~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~  246 (467)
T 2oqx_A          169 LEGLERGIEEV--GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTI  246 (467)
T ss_dssp             HHHHHHHHHHH--CGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCH
T ss_pred             HHHHHHHHHhc--CCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccH
Confidence            56777777631  124789999999988764567888999999998            1111          1222220 


Q ss_pred             -chhhhhcCCCCCCch--hcccccccCCcccccc-eecHH-HHHhh---hcCC--cccccCCCCcHHHHHHHHHH-HHHH
Q psy6205         132 -WWAFQLQGDDIIPDI--VTVGKPMGNGHPVAAV-ITTKE-IAKSF---QETG--VEYFNTYGGNPVSCAVANAV-MEVL  200 (224)
Q Consensus       132 -~~~~~~~g~~v~pDi--~~~~K~l~~G~p~~av-~~~~~-i~~~~---~~~~--~~~~~T~~~~p~~~aaa~a~-l~~~  200 (224)
                       .++.+.+   -.+|+  .+++|.++  .|+|++ +++++ +++.+   ....  .....++++.+..+.++++. ++..
T Consensus       247 ~~~~~~~~---~~~d~~~~s~sK~~g--~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~  321 (467)
T 2oqx_A          247 EQITRETY---KYADMLAMSAKKDAM--VPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDG  321 (467)
T ss_dssp             HHHHHHHG---GGCSEEEEESSSTTC--CSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHT
T ss_pred             HHHhhhhh---ccCCeEEEecccccC--CCCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhh
Confidence             1221111   11454  56788874  455554 45656 44333   2110  01123455554444434432 3433


Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         201 ETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       201 ~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .+++..++.+++.++|.+.|+++
T Consensus       322 ~~~~~~~~~~~~~~~l~~~L~~~  344 (467)
T 2oqx_A          322 MNLDWLAYRIAQVQYLVDGLEEI  344 (467)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHC
Confidence            33345677788899999998764

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=97.95  E-value=2.2e-05  Score=67.66  Aligned_cols=132  Identities=14%  Similarity=0.148  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHccCCCCceEEEE-ccccCCCCcccCCHHHHHHHHHH--------HH-hCCccccccchhhhhcCCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFA-ESLQSCGGQIIPPANYLREVYKH--------VQ-VGFGRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~-Epv~~~~G~~~~~~~~l~~~~~~--------v~-tG~GrtG~~~~~~~~~g~~v~p  144 (224)
                      +++|++.++.     +++++|++ +|..+   ...+.++..+.+++.        ++ .|+.++|. +..  ...   .+
T Consensus       158 ~~~l~~~i~~-----~~~~~v~~~~~~~~---~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~-~~~--~~~---~~  223 (420)
T 3gbx_A          158 YDEMAKLAKE-----HKPKMIIGGFSAYS---GVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGV-YPN--PVP---HA  223 (420)
T ss_dssp             HHHHHHHHHH-----HCCSEEEECCTTCC---SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTS-SCC--STT---TS
T ss_pred             HHHHHHHHHh-----cCCeEEEEecCccC---CccCHHHHHHHHHHcCCEEEEECCcchhceeccc-CCc--ccc---cC
Confidence            4566666652     24677888 45543   344433333333333        53 45545553 211  121   38


Q ss_pred             chhc--ccccccCCcccccceecH---HHHHhhhcCCcccccCCCCc--HHHHHHHHHHHHHHhh--hhHHHHHHHHHHH
Q psy6205         145 DIVT--VGKPMGNGHPVAAVITTK---EIAKSFQETGVEYFNTYGGN--PVSCAVANAVMEVLET--ENLREHALDVGNQ  215 (224)
Q Consensus       145 Di~~--~~K~l~~G~p~~av~~~~---~i~~~~~~~~~~~~~T~~~~--p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~  215 (224)
                      |+++  ++|+++| ...|++++++   ++.+.+...  .+.++++++  +..++++.+..+.+++  +++.++++++.++
T Consensus       224 di~~~s~sK~~~g-~~gg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~  300 (420)
T 3gbx_A          224 HVVTTTTHKTLAG-PRGGLILAKGGDEELYKKLNSA--VFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKA  300 (420)
T ss_dssp             SEEEEESSGGGCS-CSCEEEEESSCCHHHHHHHHHH--HC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             CEEEeecccCCCC-CCceEEEEcCCcHHHHHHhhhh--cCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            9988  6699973 2346688886   777776542  222333333  3333333333344333  4678889999999


Q ss_pred             HHHhhhhc
Q psy6205         216 LHTPKKEN  223 (224)
Q Consensus       216 l~~~l~~l  223 (224)
                      |.+.|++.
T Consensus       301 l~~~L~~~  308 (420)
T 3gbx_A          301 MVEVFLNR  308 (420)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99998764

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=97.92  E-value=6.3e-06  Score=70.85  Aligned_cols=127  Identities=7%  Similarity=-0.044  Sum_probs=81.4

Q ss_pred             CceEEEEccccCCCCcccCCHHH---HHHHHH------H--------HHhCCccccccc-hhhhhcCCCCCCchhccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANY---LREVYK------H--------VQVGFGRVGTHW-WAFQLQGDDIIPDIVTVGKP  152 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~---l~~~~~------~--------v~tG~GrtG~~~-~~~~~~g~~v~pDi~~~~K~  152 (224)
                      ++.+|++...+...|.+.+..+.   .+.+++      .        ++++|.+.|... ...+.++  ....+.+++|.
T Consensus       172 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~i~~~s~sK~  249 (398)
T 3ele_A          172 HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYD--NTLVCYSYSKS  249 (398)
T ss_dssp             TEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCS--SEEEEEESTTT
T ss_pred             CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcC--CeEEEEehhhc
Confidence            56778886667778877664432   234444      3        777776666311 1122333  44556689999


Q ss_pred             cc-CCcccccceecHHHHH------hhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         153 MG-NGHPVAAVITTKEIAK------SFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       153 l~-~G~p~~av~~~~~i~~------~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +| .|+++|++++++++.+      .+... .....+++.++++.+++.+.|+   +....++++++.++|.+.|+++
T Consensus       250 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~~~  323 (398)
T 3ele_A          250 LSLPGERIGYVLVPDEVYDKAELYAAVCGA-GRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLTRI  323 (398)
T ss_dssp             SSCTTTCCEEEECCTTSTTHHHHHHHHHHH-HHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccceeEEEEEcchhhhHHHHHHHHHHH-hhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHc
Confidence            99 8899999999987543      22211 1122467778888877766554   4446788888888998888764

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=97.91  E-value=6.9e-05  Score=64.51  Aligned_cols=134  Identities=12%  Similarity=0.068  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCC-CCc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDI-IPD  145 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v-~pD  145 (224)
                      +++|++.+..     +++.+|++.  ++..|.+.+.++..+.+++.        +++    .|. .+...+.. .+ ..|
T Consensus       153 ~~~l~~~i~~-----~~~~~v~~~--~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~----~g~-~~~~~~~~-~~~~~d  219 (417)
T 3n0l_A          153 YEKVREIAKK-----EKPKLIVCG--ASAYARVIDFAKFREIADEIGAYLFADIAHI----AGL-VVAGEHPS-PFPYAH  219 (417)
T ss_dssp             HHHHHHHHHH-----HCCSEEEEC--CSSCCSCCCHHHHHHHHHHHTCEEEEECTTT----HHH-HHTTSSCC-CTTTCS
T ss_pred             HHHHHHHHHh-----cCCeEEEEC--CcccCccCCHHHHHHHHHHcCCEEEEECccc----hhh-hhcccCCC-ccccce
Confidence            4566666652     245566643  33457776644444444444        321    111 11111111 01 248


Q ss_pred             hhccc--ccccCCcccccceec-HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-h--hhHHHHHHHHHHHHHHh
Q psy6205         146 IVTVG--KPMGNGHPVAAVITT-KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-T--ENLREHALDVGNQLHTP  219 (224)
Q Consensus       146 i~~~~--K~l~~G~p~~av~~~-~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~--~~l~~~~~~~g~~l~~~  219 (224)
                      +++++  |+++|+ ..|+++++ +++.+.+... ..+..+.+.++..+++..++++.+. +  +++.++++++.++|.+.
T Consensus       220 i~~~s~sK~l~g~-~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  297 (417)
T 3n0l_A          220 VVSSTTHKTLRGP-RGGIIMTNDEELAKKINSA-IFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANV  297 (417)
T ss_dssp             EEEEESSTTTCSC-SCEEEEESCHHHHHHHHHH-HTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeeCccccCCC-CeeEEEECCHHHHHHHhhh-hCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            88877  999543 46888888 7888877542 1222344556777777777777743 3  36777888888999988


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |++.
T Consensus       298 L~~~  301 (417)
T 3n0l_A          298 LMDR  301 (417)
T ss_dssp             HHHT
T ss_pred             HHhC
Confidence            8764

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=97.87  E-value=2.6e-05  Score=68.72  Aligned_cols=125  Identities=10%  Similarity=-0.056  Sum_probs=73.5

Q ss_pred             CCceEEEEcc----ccCCCCcccCCHHHHHHHHH--H--------HHhCCccccccchhhhhcCCCCCCchh--cccccc
Q psy6205          90 KRPCAFFAES----LQSCGGQIIPPANYLREVYK--H--------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPM  153 (224)
Q Consensus        90 ~~iaavi~Ep----v~~~~G~~~~~~~~l~~~~~--~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l  153 (224)
                      +++.+|++|+    ..+..|...+-++..+.+++  .        ++..+..... .   ..+|    .|++  +++|.+
T Consensus       164 ~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~-~---~~~g----~Di~~~S~sK~l  235 (431)
T 3ht4_A          164 SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQE-P---CHVG----ADLMAGSLIKNP  235 (431)
T ss_dssp             TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCC-G---GGTT----CSEEEEETTSGG
T ss_pred             CCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCC-c---cccC----CeEEEcCccccC
Confidence            3688999997    44554544445555555555  3        4333322222 1   1223    4555  699999


Q ss_pred             cCC--cccccceecHHHHHhhhc--CCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcC
Q psy6205         154 GNG--HPVAAVITTKEIAKSFQE--TGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       154 ~~G--~p~~av~~~~~i~~~~~~--~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      |||  .+-|++++++++.+.+..  ....++.+.+.++..+++++..|+.+  +...++..++.+++.+.|++++
T Consensus       236 gg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g  308 (431)
T 3ht4_A          236 GGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLG  308 (431)
T ss_dssp             GTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCc
Confidence            985  567889999999888764  21122233333333344455555554  3456777778888888877653

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=97.82  E-value=3.5e-05  Score=67.80  Aligned_cols=77  Identities=18%  Similarity=0.258  Sum_probs=50.0

Q ss_pred             Cchh--cccccccCCcccccceecHHHHHhhhcCCcccccCCCCcH-HHHHHHHHHHHHHhh---hhHHHHHHHHHHHHH
Q psy6205         144 PDIV--TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNP-VSCAVANAVMEVLET---ENLREHALDVGNQLH  217 (224)
Q Consensus       144 pDi~--~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p-~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~  217 (224)
                      .|++  +++|+++ |...|.+++++++.+.+...  .+.+++++++ ..++++.+++..+.+   +++.+++.++.++|.
T Consensus       239 ~di~~~s~sK~l~-G~~gG~i~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~  315 (447)
T 3h7f_A          239 ADVVSTTVHKTLG-GGRSGLIVGKQQYAKAINSA--VFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIA  315 (447)
T ss_dssp             CSEEEEESSGGGC-CCSCEEEEECGGGHHHHHHH--HTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEecCCcCCC-CCCeEEEEECHHHHHHHhhh--cCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence            3666  5799996 45567788898888877543  2223444332 235555555665533   357888888899998


Q ss_pred             Hhhhhc
Q psy6205         218 TPKKEN  223 (224)
Q Consensus       218 ~~l~~l  223 (224)
                      +.|+++
T Consensus       316 ~~L~~~  321 (447)
T 3h7f_A          316 DRLMAP  321 (447)
T ss_dssp             HHHTSH
T ss_pred             HHHHhc
Confidence            888764

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=97.80  E-value=3.7e-05  Score=67.08  Aligned_cols=138  Identities=7%  Similarity=-0.018  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhh--hhcCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAF--QLQGD  140 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~--~~~g~  140 (224)
                      +++|++.++.+   ..++.+|++...+...|.+. +.+.++++.++            ++..+ ..+..+...  ...+ 
T Consensus       193 ~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~-  266 (444)
T 3if2_A          193 FEALENLPALK---EGRIGAICCSRPTNPTGNVL-TDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDN-  266 (444)
T ss_dssp             HHHHHTCHHHH---TTCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCT-
T ss_pred             HHHHHHHHHhc---CCCceEEEeCCCCCCCCCcC-CHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCC-
Confidence            45566554322   23567777765566678755 55557777666            43211 111000000  0111 


Q ss_pred             CCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHH
Q psy6205         141 DIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-----ENLREHALDVGNQ  215 (224)
Q Consensus       141 ~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-----~~l~~~~~~~g~~  215 (224)
                       ...++.+++|.+..|+++|++++++++.+.+...  ....+++.++++++++.+.|+..+-     +.+.+++++.-++
T Consensus       267 -~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~  343 (444)
T 3if2_A          267 -NTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAM--NAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATL  343 (444)
T ss_dssp             -TEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHH--HHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHH
T ss_pred             -CEEEEechhhccCCCCceEEEEECHHHHHHHHHH--HHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence             3344668999866789999999999999888643  3446788899999998888875321     1244445555555


Q ss_pred             HHHhhh
Q psy6205         216 LHTPKK  221 (224)
Q Consensus       216 l~~~l~  221 (224)
                      +.+.|+
T Consensus       344 ~~~~l~  349 (444)
T 3if2_A          344 AVKLLK  349 (444)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=97.79  E-value=6.8e-05  Score=64.65  Aligned_cols=121  Identities=8%  Similarity=0.009  Sum_probs=77.2

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCc-------hhcccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPD-------IVTVGK  151 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pD-------i~~~~K  151 (224)
                      ++.+|++...+...|.+.+ ++.++++.++            ++..+ ..+     ....+  +.||       +.+++|
T Consensus       180 ~~~~v~~~~p~NptG~~~~-~~~~~~l~~~a~~~~~~li~De~~~~~-~~~-----~~~~~--~~~~~~~~~i~~~s~sK  250 (417)
T 3g7q_A          180 ETGMICVSRPTNPTGNVIT-DEELMKLDRLANQHNIPLVIDNAYGVP-FPG-----IIFSE--ARPLWNPNIILCMSLSK  250 (417)
T ss_dssp             TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCCEEEECTTCTT-TTC-----CBCSC--CCCCCCTTEEEEEESGG
T ss_pred             CceEEEECCCCCCCCCccC-HHHHHHHHHHHHHcCCEEEEeCCCccc-ccc-----ccccc--cccCCCCCEEEEEechh
Confidence            5677777766777786554 4457777776            32211 011     11112  3333       668999


Q ss_pred             cccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHhhhh
Q psy6205         152 PMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-----ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       152 ~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-----~~l~~~~~~~g~~l~~~l~~  222 (224)
                      .+..|+++|++++++++++.+...  ....+++.++++++++.+.|+...-     +.+.++.++.-+++.+.|++
T Consensus       251 ~~~~G~r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  324 (417)
T 3g7q_A          251 LGLPGSRCGIIIANDKTITAIANM--NGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRR  324 (417)
T ss_dssp             GTCTTSCCEEEECCHHHHHHHHHH--HHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcceEEEEeCHHHHHHHHHh--hcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655689999999999999988653  3456888899999999888874321     12444555555666665543

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=97.79  E-value=6.5e-05  Score=64.80  Aligned_cols=120  Identities=17%  Similarity=0.121  Sum_probs=78.9

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc----ccccC-Cc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG----KPMGN-GH  157 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~----K~l~~-G~  157 (224)
                      ++.+|+++..   .|.+.+.++..+.+++.        +++ +|....    ...++  ..+|+++++    |.+++ | 
T Consensus       151 ~~~~v~~~n~---tG~~~~l~~i~~l~~~~~~~li~Dea~~-~g~~~~----~~~~~--~~~di~~~S~~~sK~~~~~G-  219 (399)
T 2oga_A          151 RTRALLPVHL---YGHPADMDALRELADRHGLHIVEDAAQA-HGARYR----GRRIG--AGSSVAAFSFYPGKNLGCFG-  219 (399)
T ss_dssp             TEEEECCBCG---GGCCCCHHHHHHHHHHHTCEECEECTTC-TTCEET----TEETT--CTTCEEEEECCTTSSSCCSS-
T ss_pred             CCeEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccc-ccCccC----Ceecc--cccCEEEEeCCCCccCCcCC-
Confidence            5677876654   45566555555555555        443 322111    11233  447999885    99998 8 


Q ss_pred             ccccceec-HHHHHhhhc---CCc--c-----cccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITT-KEIAKSFQE---TGV--E-----YFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~-~~i~~~~~~---~~~--~-----~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +.|+++++ +++.+.+..   .+.  .     ...++..++++++++.++|+.+++  +.++.+++.+++.+.|+++
T Consensus       220 ~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~l~~~L~~~  294 (399)
T 2oga_A          220 DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDS--WNGRRSALAAEYLSGLAGL  294 (399)
T ss_dssp             CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHTTTC
T ss_pred             ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccC
Confidence            88888886 888776543   110  0     123456789999999999988754  6778888899999988764

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=97.78  E-value=1.3e-05  Score=71.55  Aligned_cols=82  Identities=20%  Similarity=0.180  Sum_probs=50.5

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCcccc---chhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSE---AQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~---a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      +++|.|++|||+|||+|||+++++.++.++...   +.++...++..+.+..+..+..+...+...  +++..++.++.+
T Consensus       384 ~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~i~l~PPL~i--t~~eid~~~~~l  461 (473)
T 4e3q_A          384 AERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFIL--TEAQMDEMFDKL  461 (473)
T ss_dssp             TTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEETTEEEECCCTTC--CHHHHHHHHHHH
T ss_pred             hcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEecCCEEEEeCCCCC--CHHHHHHHHHHH
Confidence            568999999999999999999999988876532   223333333334433333333322111111  266677777777


Q ss_pred             HHHHHHH
Q psy6205          79 QDLIEAM   85 (224)
Q Consensus        79 ~~~~~~~   85 (224)
                      ++.++++
T Consensus       462 ~~al~~v  468 (473)
T 4e3q_A          462 EKALDKV  468 (473)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776653

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=97.78  E-value=2.5e-05  Score=65.64  Aligned_cols=138  Identities=9%  Similarity=0.034  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHH-ccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCC--ccccccchhhhhcC
Q psy6205          75 AQDVQDLIEAM-GRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGF--GRVGTHWWAFQLQG  139 (224)
Q Consensus        75 ~~~l~~~~~~~-~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~--GrtG~~~~~~~~~g  139 (224)
                      +++|++.++.- ..++.++.+|++++. +..|.+.+ +++++++.++            ++++|  |+++. ....-...
T Consensus       128 ~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~  204 (359)
T 1svv_A          128 VADIESALHENRSEHMVIPKLVYISNT-TEVGTQYT-KQELEDISASCKEHGLYLFLDGARLASALSSPVN-DLTLADIA  204 (359)
T ss_dssp             HHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCC-HHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTC-CCCHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecC-HHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCc-chhhhhhh
Confidence            45666666531 011235889999987 56777665 5888888777            65544  55543 11110111


Q ss_pred             CCCCCchhcc--cccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHH
Q psy6205         140 DDIIPDIVTV--GKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGN  214 (224)
Q Consensus       140 ~~v~pDi~~~--~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~  214 (224)
                        ..+|++++  .|. ++.+.+|++++++++++.+........+++..++...++..+   .+++   +++.++++++.+
T Consensus       205 --~~~d~~~~s~~K~-g~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~  278 (359)
T 1svv_A          205 --RLTDMFYIGATKA-GGMFGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEV---LMKDNLFFELGAHSNKMAA  278 (359)
T ss_dssp             --HHCSEEEEECTTT-TCSSCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHH---HTSTTHHHHHHHHHHHHHH
T ss_pred             --hcCCEEEEecccC-CCCCceEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHH---HHhhhhHHHHHHHHHHHHH
Confidence              23787764  663 322566788889888776653200123444433333333322   3433   357788889999


Q ss_pred             HHHHhhh
Q psy6205         215 QLHTPKK  221 (224)
Q Consensus       215 ~l~~~l~  221 (224)
                      +|.+.|+
T Consensus       279 ~l~~~L~  285 (359)
T 1svv_A          279 ILKAGLE  285 (359)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9988884

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=97.75  E-value=8e-05  Score=64.72  Aligned_cols=105  Identities=10%  Similarity=-0.015  Sum_probs=70.1

Q ss_pred             CCceEEEEccccCC-CCcccCCHHHHHHHHHH-------------HHhC--Cccccc---cchhhh----hcCCCCCCch
Q psy6205          90 KRPCAFFAESLQSC-GGQIIPPANYLREVYKH-------------VQVG--FGRVGT---HWWAFQ----LQGDDIIPDI  146 (224)
Q Consensus        90 ~~iaavi~Epv~~~-~G~~~~~~~~l~~~~~~-------------v~tG--~GrtG~---~~~~~~----~~g~~v~pDi  146 (224)
                      .++.+|++.|...+ .|.+.+..+ ++++.++             ++..  |+..+.   .++...    ..+  ...++
T Consensus       179 ~~~~~v~~~p~~~NPtG~~~~~~~-~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~  255 (427)
T 3ppl_A          179 PQVKGMWVVPVFSNPTGFTVTEDV-AKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPN--RFWAF  255 (427)
T ss_dssp             TTEEEEEECCSSCTTTCCCCCHHH-HHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTT--SEEEE
T ss_pred             CCCeEEEECCCCCCCCCccCCHHH-HHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCC--cEEEE
Confidence            46788888986544 777666553 5555442             6666  443331   012211    222  45567


Q ss_pred             hcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH
Q psy6205         147 VTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV  199 (224)
Q Consensus       147 ~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~  199 (224)
                      .+++|.++.|+.+|++++++++++.+...  ....+++.++++.+++.+.|+.
T Consensus       256 ~S~SK~~~~G~r~G~~~~~~~l~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~  306 (427)
T 3ppl_A          256 TSTSKITLAGAGVSFFLTSAENRKWYTGH--AGIRGIGPNKVNQLAHARYFGD  306 (427)
T ss_dssp             EESTTTSCTTSSCEEEECCHHHHHHHHHH--HHHHCSCCCHHHHHHHHHHHCS
T ss_pred             echhhccCcCccEEEEEcCHHHHHHHHHH--hhcccCCCCHHHHHHHHHHHhC
Confidence            79999977789999999999999888643  3346788889988888777754

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=97.74  E-value=0.00016  Score=60.35  Aligned_cols=125  Identities=10%  Similarity=0.055  Sum_probs=81.6

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCchhccccccc-CCcccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMG-NGHPVAAV  162 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~-~G~p~~av  162 (224)
                      +..++++...+...|.+.+.++..+.+++.       ++.+|+..+. . .....+  ..-.+.+++|.+| .|+.+|++
T Consensus       135 ~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~ivDea~~~~~~~~~-~-~~~~~~--~~i~~~S~sK~~g~~G~r~G~~  210 (337)
T 3p1t_A          135 RDDCVVLANPSNPTGQALSAGELDQLRQRAGKLLIDETYVDYSSFRA-R-GLAYGE--NELVFRSFSKSYGLAGLRLGAL  210 (337)
T ss_dssp             TTEEEEEESSCTTTCCCCCHHHHHHHHHHCSEEEEECTTGGGSSCSS-S-CCCCBT--TEEEEEESSSTTCCTTTCCEEE
T ss_pred             CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCcEEEECCChhhccccc-c-ccccCC--CEEEEeeCchhccCcchheEEE
Confidence            346777776677788877777655555443       5555544332 1 111111  1112347899998 78999999


Q ss_pred             eecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         163 ITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       163 ~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++++++.+.+...    ..+++.++++.+++.+.|+..+ -++..+++.+.-++|.+.|+++
T Consensus       211 ~~~~~~~~~l~~~----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  268 (337)
T 3p1t_A          211 FGPSELIAAMKRK----QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL  268 (337)
T ss_dssp             ECCHHHHHHHHTT----SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EeCHHHHHHHHhh----cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999988643    3467788998888888886532 2345566666777888888764

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=97.73  E-value=0.00036  Score=58.36  Aligned_cols=126  Identities=10%  Similarity=-0.039  Sum_probs=84.1

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH----------HHhCCccccccchhhhhcCCCCCCchhcc--cccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTV--GKPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~--~K~l~~G~  157 (224)
                      +++.+|+++..+...|.+.+.++..+.+++.          +++ +|...   +..+.+    .+|+++.  +|.++++.
T Consensus       120 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~-~~~~~---~~~~~~----~~d~~~~s~~K~~~~~~  191 (352)
T 1iug_A          120 EGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTS-LLVGE---VALEAM----GVDAAASGSQKGLMCPP  191 (352)
T ss_dssp             SSCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTT-BTTBC---CCSGGG----TCSEEEEESSSTTCCCS
T ss_pred             cCCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCcc-ccCcc---eecccc----CeeEEEecCcccccCCC
Confidence            3567899999998889888755555555543          222 33221   112222    3787764  59887766


Q ss_pred             ccccceecHHHHHhhhc------------CCcccccCCCCcHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQE------------TGVEYFNTYGGNPVSCAVANAVMEVLETE--NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~------------~~~~~~~T~~~~p~~~aaa~a~l~~~~~~--~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .+|++++++++.+.+..            .......+++.|+.+++++.++|+.+++.  ++.++++++.+++.+.|+++
T Consensus       192 g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~  271 (352)
T 1iug_A          192 GLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG  271 (352)
T ss_dssp             CEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            67999999998765210            00011235567888999999999998654  77888899999999998764

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=97.73  E-value=0.00011  Score=62.63  Aligned_cols=120  Identities=18%  Similarity=0.157  Sum_probs=79.6

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh-CCccccccchhhhhcCCCCCCchhccc----ccccC-
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV-GFGRVGTHWWAFQLQGDDIIPDIVTVG----KPMGN-  155 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t-G~GrtG~~~~~~~~~g~~v~pDi~~~~----K~l~~-  155 (224)
                      +++++|+++...|   ...+-++..+.+++.        +++ |+...|+      ..+  ..+|++++|    |.+++ 
T Consensus       122 ~~~~~v~~~~~~G---~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~------~~~--~~~di~~~Sf~~~K~l~~~  190 (367)
T 3nyt_A          122 PRTKAIIPVSLYG---QCADFDAINAIASKYGIPVIEDAAQSFGASYKGK------RSC--NLSTVACTSFFPSAPLGCY  190 (367)
T ss_dssp             TTEEEECCBCGGG---CCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTE------ETT--SSSSEEEEECCTTSSSCCS
T ss_pred             cCCcEEEeeCCcc---ChhhHHHHHHHHHHcCCEEEEECccccCCeECCe------ecc--CCCCEEEEECCCCCcCCCc
Confidence            4678888766554   344444444444444        443 3322232      233  344999987    99998 


Q ss_pred             Cccccccee-cHHHHHhhhcC---Cc-------ccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         156 GHPVAAVIT-TKEIAKSFQET---GV-------EYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       156 G~p~~av~~-~~~i~~~~~~~---~~-------~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      |. .|++++ ++++++.+...   +.       ..+.++..+++.++++++.++.++  ++.++.+++.+++++.|+++
T Consensus       191 g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~--~~~~~~~~~~~~~~~~L~~~  266 (367)
T 3nyt_A          191 GD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFE--EEIALRQKVAAEYDLSLKQV  266 (367)
T ss_dssp             SC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred             Cc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC
Confidence            76 667777 57787766431   10       113578899999999999998874  46788899999999999875

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=97.70  E-value=7.6e-05  Score=64.79  Aligned_cols=122  Identities=16%  Similarity=0.140  Sum_probs=82.9

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHH------------H------HHhCCccccccchhhhhcCCCCCCchhcc--c
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYK------------H------VQVGFGRVGTHWWAFQLQGDDIIPDIVTV--G  150 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~------------~------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~--~  150 (224)
                      ++.+|++++.....|.+.+.++..+.+++            +      ++ ++|++.   .....    ..+|++++  +
T Consensus       175 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~-~~~~~~---~~~~~----~~~d~~~~s~~  246 (432)
T 3a9z_A          175 TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQ-ALGKRR---VDVED----LGVDFLTIVGH  246 (432)
T ss_dssp             TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTT-TTTTSC---CCHHH----HCCSEEEEEGG
T ss_pred             CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchh-hhCCcc---cChhh----cCCCEEEEehh
Confidence            57899999999889998887776666654            3      33 333322   11122    23788765  9


Q ss_pred             ccccCCcccccceecHHH-HHhhhcCC-----cccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhh
Q psy6205         151 KPMGNGHPVAAVITTKEI-AKSFQETG-----VEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       151 K~l~~G~p~~av~~~~~i-~~~~~~~~-----~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~  222 (224)
                      |.+  |..+|++++++++ .+.+....     .....+++.|+.+++++.++|+.+++  +++.++++++.++|.+.|++
T Consensus       247 K~~--g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~  324 (432)
T 3a9z_A          247 KFY--GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEA  324 (432)
T ss_dssp             GTT--CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhc--CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            976  3448899998765 22232110     01224567889999999999998865  57888899999999998876

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=97.69  E-value=0.00049  Score=61.58  Aligned_cols=146  Identities=16%  Similarity=0.089  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCC-CCc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDI-IPD  145 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v-~pD  145 (224)
                      .++|++.++.-...+.++++|++.......|.+.+.++..+.+++.        ++.|+..... .+.+...+  + .+|
T Consensus       243 ~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~-~~~~~~~g--~~~aD  319 (515)
T 2jis_A          243 PEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQ-THRHLLDG--IQRAD  319 (515)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCT-TTGGGGTT--GGGCS
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhCh-hhHhhcCC--CccCC
Confidence            4556666653212334678899988777788888766676666666        5665544432 23322334  5 689


Q ss_pred             hhcc--cccccCCcccccceecHH--HHHhhhcC--Ccccc-----------c------CCCCcHHHHHHHHHHHHHHhh
Q psy6205         146 IVTV--GKPMGNGHPVAAVITTKE--IAKSFQET--GVEYF-----------N------TYGGNPVSCAVANAVMEVLET  202 (224)
Q Consensus       146 i~~~--~K~l~~G~p~~av~~~~~--i~~~~~~~--~~~~~-----------~------T~~~~p~~~aaa~a~l~~~~~  202 (224)
                      ++++  .|.+++.+.+|+++++++  +++.....  .....           .      +.....++..++++.+..-.-
T Consensus       320 ~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~  399 (515)
T 2jis_A          320 SVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGL  399 (515)
T ss_dssp             EEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             EEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHH
Confidence            9987  999887788999999877  65532110  00000           0      111124444445554432222


Q ss_pred             hhHHHHHHHHHHHHHHhhhhc
Q psy6205         203 ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       203 ~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++.++..++.++|.++|+++
T Consensus       400 ~~~~~~~~~~a~~l~~~L~~~  420 (515)
T 2jis_A          400 ERRIDQAFVLARYLVEEMKKR  420 (515)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHhcC
Confidence            457788889999999999864

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=97.69  E-value=0.00018  Score=63.59  Aligned_cols=127  Identities=13%  Similarity=0.047  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      +++|++.++.     +.+.+|++|+.....|.+.+.++..+.+++.        +++    ++. .  +..+.  ..+|+
T Consensus       189 ~~~l~~ai~~-----~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~----~~~-~--~~~~~--~g~Di  254 (445)
T 1qgn_A          189 VGALELALNQ-----KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFA----TPL-N--QKALA--LGADL  254 (445)
T ss_dssp             HHHHHHHHHH-----SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT----CTT-T--CCTTT--TTCSE
T ss_pred             HHHHHHHhcc-----CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCc----ccc-c--CCccc--cCCEE
Confidence            4556655541     3348999999998899888766666666655        432    221 1  12233  55898


Q ss_pred             hc--ccccccCC--cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHH
Q psy6205         147 VT--VGKPMGNG--HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLH  217 (224)
Q Consensus       147 ~~--~~K~l~~G--~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~  217 (224)
                      ++  ++|.++++  .++|++++++++++.+...  ........+|..+..++..|+.+..  +...++.+.+.++|.
T Consensus       255 v~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~--~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~  329 (445)
T 1qgn_A          255 VLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL--HHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILE  329 (445)
T ss_dssp             EEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH--HHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCcccccccccceEEEEEECHHHHHHHHHH--HHHhCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            86  89999874  4799999999998877532  1111223478888877777776632  233444444444443

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=97.67  E-value=0.00015  Score=64.65  Aligned_cols=143  Identities=15%  Similarity=0.139  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCC-CCch
Q psy6205          76 QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDI-IPDI  146 (224)
Q Consensus        76 ~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v-~pDi  146 (224)
                      ++|++.++.-...+..+.+|++.......|.+.+.++..+.+++.        ++.|+.....  +.....+  + .+|+
T Consensus       243 ~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~--~~~~~~g--i~~~D~  318 (497)
T 2qma_A          243 TKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS--HKSRLKG--VERAHS  318 (497)
T ss_dssp             GGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST--TGGGGTT--GGGCSE
T ss_pred             HHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc--chHhhcC--cccCCE
Confidence            445555543111122355777776666778888777777777776        7777655443  3333444  6 7899


Q ss_pred             hcc--cccccCCcccccceecHHH-HHhhhcCCcccc---cCCCCcHHHHH----------HHHHHHHHHhhh---hHHH
Q psy6205         147 VTV--GKPMGNGHPVAAVITTKEI-AKSFQETGVEYF---NTYGGNPVSCA----------VANAVMEVLETE---NLRE  207 (224)
Q Consensus       147 ~~~--~K~l~~G~p~~av~~~~~i-~~~~~~~~~~~~---~T~~~~p~~~a----------aa~a~l~~~~~~---~l~~  207 (224)
                      +++  .|.+++++++|+++++++. ++.+.... .+.   .+...+++.++          +..++++.+.++   ++.+
T Consensus       319 i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~-~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~  397 (497)
T 2qma_A          319 ISVDFHKLFYQTISCGALLVNDKSNFKFLLHHA-DYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYD  397 (497)
T ss_dssp             EEEETTTTTCCCSSCEEEEESCGGGGGGGCC---------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHH
T ss_pred             EEEcchhccCCCcceEEEEEeCHHHHHHhcCCc-hhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHH
Confidence            887  9999888899999987553 44443211 111   11123344332          223466666443   5777


Q ss_pred             HHHHHHHHHHHhhhhc
Q psy6205         208 HALDVGNQLHTPKKEN  223 (224)
Q Consensus       208 ~~~~~g~~l~~~l~~l  223 (224)
                      +..++.++|.+.|+++
T Consensus       398 ~~~~~a~~l~~~L~~~  413 (497)
T 2qma_A          398 HLLAQTLEVADMIRTN  413 (497)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            8889999999999864

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=97.67  E-value=0.00017  Score=60.81  Aligned_cols=131  Identities=14%  Similarity=0.064  Sum_probs=73.5

Q ss_pred             CCCceEEEEccccCCCCcccCCHHHHHHHHHH-HHhCCc--cccc-cchhhhhcCC-----CCCCchh--cccccccCCc
Q psy6205          89 GKRPCAFFAESLQSCGGQIIPPANYLREVYKH-VQVGFG--RVGT-HWWAFQLQGD-----DIIPDIV--TVGKPMGNGH  157 (224)
Q Consensus        89 ~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-v~tG~G--rtG~-~~~~~~~~g~-----~v~pDi~--~~~K~l~~G~  157 (224)
                      .+++++|++++.+...|-...+.+.++++.++ -..|.-  --+. .++.....+.     .-..|++  +++|+++++.
T Consensus       135 ~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~  214 (359)
T 3pj0_A          135 REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIA  214 (359)
T ss_dssp             SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSS
T ss_pred             cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcc
Confidence            35789999998876543345677778777776 111110  0000 0011111110     0124666  7899887653


Q ss_pred             ccccceecHHHHHhhhcCCcccc-cCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITTKEIAKSFQETGVEYF-NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~~~i~~~~~~~~~~~~-~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      . +.+++++++++.+......+. +++..++.+++ +.+.|+...  +..++..+..+++.+.|+++
T Consensus       215 g-g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a-~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~  277 (359)
T 3pj0_A          215 G-AILAGNDDFVQEAKIWKRRYGGDLISLYPYILS-ADYYFEKRI--GKMAEYFEAAKGLAERFNSC  277 (359)
T ss_dssp             C-EEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHH-HHHHHHHHG--GGHHHHHHHHHHHHHHHHTS
T ss_pred             e-EEEECCHHHHHHHHHHHHHhCCCcchhHHHHHH-HHHHHHHHH--HHhHHHHHHHHHHHHHHhhC
Confidence            3 567889999988753211122 34455555544 445665542  34556778888888888765

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=97.67  E-value=0.00016  Score=62.76  Aligned_cols=144  Identities=15%  Similarity=0.076  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccc-cchhhhhcCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGT-HWWAFQLQGDD  141 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~-~~~~~~~~g~~  141 (224)
                      +++|++.++   +.+.+..++++...+...|.+. +.+.++++.++            +..+|...+. .......+. +
T Consensus       182 ~~~l~~~l~---~~~~~~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~-~  256 (420)
T 4f4e_A          182 FDGMLAALN---GYEPGTIVVLHACCHNPTGVDL-NDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFA-A  256 (420)
T ss_dssp             HHHHHHHHT---TCCTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHH-H
T ss_pred             HHHHHHHHH---hCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHH-h
Confidence            455555553   2345677888888887788654 55667777666            6677755431 112222221 0


Q ss_pred             CCCch---hccccccc-CCccccccee---cHHHHHhhhcCCc-cc-ccCCCCcHHHHHHHHHHHHHH------h--hhh
Q psy6205         142 IIPDI---VTVGKPMG-NGHPVAAVIT---TKEIAKSFQETGV-EY-FNTYGGNPVSCAVANAVMEVL------E--TEN  204 (224)
Q Consensus       142 v~pDi---~~~~K~l~-~G~p~~av~~---~~~i~~~~~~~~~-~~-~~T~~~~p~~~aaa~a~l~~~------~--~~~  204 (224)
                      ..+++   .+++|.++ .|+++|++++   ++++++.+..... .. ..+...++++.+++.+.|+.-      +  -+.
T Consensus       257 ~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  336 (420)
T 4f4e_A          257 ANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGE  336 (420)
T ss_dssp             TTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            22333   36899999 6899998753   5666654322100 11 233344666666666666542      1  145


Q ss_pred             HHHHHHHHHHHHHHhhhhc
Q psy6205         205 LREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       205 l~~~~~~~g~~l~~~l~~l  223 (224)
                      +.++++++.++|.+.|+++
T Consensus       337 ~~~~~~~~~~~l~~~L~~~  355 (420)
T 4f4e_A          337 MRDRIRAMRNGLVERLKAA  355 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            6778888888898888765

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=97.67  E-value=0.00015  Score=62.17  Aligned_cols=126  Identities=13%  Similarity=0.083  Sum_probs=78.1

Q ss_pred             CceEEEE-ccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCch--hccccccc-
Q psy6205          91 RPCAFFA-ESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDI--VTVGKPMG-  154 (224)
Q Consensus        91 ~iaavi~-Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi--~~~~K~l~-  154 (224)
                      ++.+|++ .| ....|.+. +++.++++.++            ++..|...|. ......+. + ..++  .+++|.++ 
T Consensus       164 ~~~~v~~~~p-~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~-~-~~~i~~~s~SK~~~~  238 (385)
T 1b5p_A          164 RTKALVVNSP-NNPTGAVY-PKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE-HFSPGRVA-P-EHTLTVNGAAKAFAM  238 (385)
T ss_dssp             TEEEEEEESS-CTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCGGGTC-T-TTEEEEEESTTTTTC
T ss_pred             CCEEEEEeCC-CCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEccchhcccCCC-CCCHHHcC-C-CCEEEEEechhhcCC
Confidence            3555555 55 33456544 55666666666            5444422222 12222221 1 1123  26899998 


Q ss_pred             CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH---Hhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         155 NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV---LET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 ~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~---~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .|+.+|++++++++++.+...  ....|++.++++..++.++|+.   ..+  ++..+++++.-+++.+.|+++
T Consensus       239 ~G~RiG~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  310 (385)
T 1b5p_A          239 TGWRIGYACGPKEVIKAMASV--SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL  310 (385)
T ss_dssp             GGGCCEEEECCHHHHHHHHHH--HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEeCHHHHHHHHHH--HhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            689999999999998887642  2235678889999888888864   222  346677777788888887753

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=97.65  E-value=0.00013  Score=62.79  Aligned_cols=133  Identities=16%  Similarity=0.028  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh-CCccccccchhhhhcCCCCCCc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV-GFGRVGTHWWAFQLQGDDIIPD  145 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t-G~GrtG~~~~~~~~~g~~v~pD  145 (224)
                      +++|++.++.   .++++.+|++++..|   ...+.++..+.+++.        +++ |+...|. ...  .+   -..|
T Consensus       109 ~~~l~~~i~~---~~~~~~~v~~~~~~G---~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~--~~---~~~~  176 (394)
T 1o69_A          109 VDLLKLAIKE---CEKKPKALILTHLYG---NAAKMDEIVEICKENDIVLIEDAAEALGSFYKNK-ALG--TF---GEFG  176 (394)
T ss_dssp             HHHHHHHHHH---CSSCCCEEEEECGGG---CCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE-ETT--SS---SSEE
T ss_pred             HHHHHHHHhc---ccCCceEEEEECCCC---ChhhHHHHHHHHHHcCCEEEEECcCcccceeCCc-ccc--cc---cCcE
Confidence            4566666642   223678899998544   444445555555554        666 6544443 111  12   1368


Q ss_pred             hhcc--cccccCCcccccceec-HHHHHhhhcC---Cc---------ccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHH
Q psy6205         146 IVTV--GKPMGNGHPVAAVITT-KEIAKSFQET---GV---------EYFNTYGGNPVSCAVANAVMEVLETENLREHAL  210 (224)
Q Consensus       146 i~~~--~K~l~~G~p~~av~~~-~~i~~~~~~~---~~---------~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~  210 (224)
                      +.++  +|.++++ -+|+++++ +++.+.+...   ..         ..+.++..+++.++++++.++.+++  ..++.+
T Consensus       177 ~~s~s~~K~l~~~-~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~--~~~~~~  253 (394)
T 1o69_A          177 VYSYNGNKIITTS-GGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQ--RVLKKR  253 (394)
T ss_dssp             EEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHH--HHHHHH
T ss_pred             EEEEeCCccCCCC-CceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHHH--HHHHHH
Confidence            8888  6888754 47889995 8888776431   10         0112233678999998887877755  678899


Q ss_pred             HHHHHHHHhhhh
Q psy6205         211 DVGNQLHTPKKE  222 (224)
Q Consensus       211 ~~g~~l~~~l~~  222 (224)
                      ++.+++.+.|++
T Consensus       254 ~~~~~l~~~L~~  265 (394)
T 1o69_A          254 EIYEWYKEFLGE  265 (394)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcc
Confidence            999999999875

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=97.65  E-value=0.00014  Score=63.16  Aligned_cols=118  Identities=12%  Similarity=-0.008  Sum_probs=80.1

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHH-H--------HHhCCccccccchhhhhcCCCCCCchh--cccccccC-Cc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYK-H--------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN-GH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~-~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~-G~  157 (224)
                      +++.+|+++......|.+.+.++..+.+++ .        ++..+.. .. ..   .++    .|++  +++|.+++ |.
T Consensus       146 ~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~-~~-~~---~~~----~di~~~S~sK~~~~~g~  216 (404)
T 1e5e_A          146 PNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMI-TN-PV---DFG----VDVVVHSATKYINGHTD  216 (404)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTT-CC-GG---GGT----CSEEEEETTTTTTCSSC
T ss_pred             CCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhh-CC-cc---ccC----CEEEEEcCccccCCCCC
Confidence            367899999998889988887777777777 5        4443321 11 11   133    5666  68999986 57


Q ss_pred             cc-ccceecHHHHH-hhhcCCccccc-CCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHH
Q psy6205         158 PV-AAVITTKEIAK-SFQETGVEYFN-TYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHT  218 (224)
Q Consensus       158 p~-~av~~~~~i~~-~~~~~~~~~~~-T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~  218 (224)
                      ++ |++++++++.+ .+...  .... +...+|++++++.++|+.+.  .+...++.+.+.+++++
T Consensus       217 ri~G~~~~~~~~~~~~l~~~--~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~  280 (404)
T 1e5e_A          217 VVAGLICGKADLLQQIRMVG--IKDITGSVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKS  280 (404)
T ss_dssp             CCCEEEEECHHHHHHHHHTC--CCCCCCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEEECHHHHHHHHHHH--HHhCCCCCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            87 99999999888 77543  2222 45689999999998887653  23345555555555554

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=97.59  E-value=0.00016  Score=61.79  Aligned_cols=145  Identities=14%  Similarity=0.060  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCcccc-ccchhhhhc-C-
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVG-THWWAFQLQ-G-  139 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG-~~~~~~~~~-g-  139 (224)
                      +++|++.++   +...+..++++...+...|.+. +.+.++++.++            +..+|...+ ........+ + 
T Consensus       160 ~~~l~~~l~---~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~  235 (397)
T 3fsl_A          160 FNDLLATLK---TLQAGSIVLLHPCCHNPTGADL-TNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASA  235 (397)
T ss_dssp             HHHHHHHHT---TCCTTCEEEECSSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHT
T ss_pred             HHHHHHHHH---hCCCCCEEEEeCCCCCCCCcCC-CHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhc
Confidence            455555553   2334566777766676677654 55556666665            666664432 011222222 1 


Q ss_pred             CCCCCchhccccccc-CCccccccee---cHHHHHhhhcCCc-cc-ccCCCCcHHHHHHHHHHHHHH------h--hhhH
Q psy6205         140 DDIIPDIVTVGKPMG-NGHPVAAVIT---TKEIAKSFQETGV-EY-FNTYGGNPVSCAVANAVMEVL------E--TENL  205 (224)
Q Consensus       140 ~~v~pDi~~~~K~l~-~G~p~~av~~---~~~i~~~~~~~~~-~~-~~T~~~~p~~~aaa~a~l~~~------~--~~~l  205 (224)
                      .+....+.+++|.+| .|+++|++++   ++++++.+..... .. ..+...++++.+++.+.|+.-      +  -+++
T Consensus       236 ~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  315 (397)
T 3fsl_A          236 GLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEM  315 (397)
T ss_dssp             TCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            012222346899999 7999999874   5666554432100 11 123344666666666655521      1  2456


Q ss_pred             HHHHHHHHHHHHHhhhhc
Q psy6205         206 REHALDVGNQLHTPKKEN  223 (224)
Q Consensus       206 ~~~~~~~g~~l~~~l~~l  223 (224)
                      .++++++.++|.+.|+++
T Consensus       316 ~~~~~~~~~~l~~~L~~~  333 (397)
T 3fsl_A          316 RTRILAMRQELVKVLSTE  333 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            778888888888888764

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=97.58  E-value=0.00022  Score=60.18  Aligned_cols=119  Identities=13%  Similarity=0.040  Sum_probs=70.6

Q ss_pred             ceEEEEccccCCC-CcccCCHHHHHHHHHH------------H-----HhCCccccccchhhhhcCCCCCCchh--cccc
Q psy6205          92 PCAFFAESLQSCG-GQIIPPANYLREVYKH------------V-----QVGFGRVGTHWWAFQLQGDDIIPDIV--TVGK  151 (224)
Q Consensus        92 iaavi~Epv~~~~-G~~~~~~~~l~~~~~~------------v-----~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K  151 (224)
                      +.+|++++..... | ...+++.++++.++            .     ...+|++.. .+.       -..|++  +++|
T Consensus       136 ~~~v~~~~p~np~~G-~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~~~-------~~~d~~~~s~sK  206 (357)
T 3lws_A          136 IACLLLELPQREIGG-VAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAA-EIA-------GLFDSIYISFYK  206 (357)
T ss_dssp             CSEEEEESSBGGGTS-BCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHH-HHH-------TTSSEEEEESSS
T ss_pred             cceEEEEcccccCCc-eeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChH-HHH-------hcCCEEEEeccc
Confidence            7889999887654 5 46678888888877            1     222333332 111       113444  8999


Q ss_pred             cccCCcccccceecHHHHHhhhcCCcccc-cCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         152 PMGNGHPVAAVITTKEIAKSFQETGVEYF-NTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       152 ~l~~G~p~~av~~~~~i~~~~~~~~~~~~-~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .+++... |.+++++++++.+......+. +++..++.+ +++.++|+...+  ..++..+..+++.+.|+++
T Consensus       207 ~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~l~~~L~~~  275 (357)
T 3lws_A          207 GLGGIAG-AILAGPAAFCQTARIWKRRYGGDLISLYPYI-VSADYYYELRKD--RMGQYYEQAKQLAEQFNAL  275 (357)
T ss_dssp             TTCCSSC-EEEEECHHHHHHHHHHHHHTTCCCSCCHHHH-HHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTS
T ss_pred             cCCCCce-EEEEcCHHHHHHHHHHHHHhcCCcccchHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhC
Confidence            9954322 778889999888753211122 344445554 445567766422  2344567777888888764

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=97.54  E-value=0.0014  Score=58.44  Aligned_cols=146  Identities=17%  Similarity=0.094  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCC-CCc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDI-IPD  145 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v-~pD  145 (224)
                      +++|++.++.....+.++.+|++.-.....|.+.+.++..+.+++.        ++.|+..... -+.....|  + .+|
T Consensus       229 ~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~-~~~~~~~g--~~~~D  305 (504)
T 2okj_A          229 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSR-KHRHKLNG--IERAN  305 (504)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCT-TTGGGGTT--GGGCS
T ss_pred             HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCH-hhHhhcCC--cccCC
Confidence            4566666653222234578888876666678887777777777766        5555432211 11122223  4 589


Q ss_pred             hhccc--ccccCCcccccceecH-HHHHhhhcC--Ccccc-cC----------------CCCcHHHHHHHHHHHHHHhhh
Q psy6205         146 IVTVG--KPMGNGHPVAAVITTK-EIAKSFQET--GVEYF-NT----------------YGGNPVSCAVANAVMEVLETE  203 (224)
Q Consensus       146 i~~~~--K~l~~G~p~~av~~~~-~i~~~~~~~--~~~~~-~T----------------~~~~p~~~aaa~a~l~~~~~~  203 (224)
                      +++++  |.+++.+++|++++++ ++++.....  ...+. .+                -..+++++.++++++..-.-+
T Consensus       306 ~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~  385 (504)
T 2okj_A          306 SVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFE  385 (504)
T ss_dssp             EEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHH
Confidence            99875  9888778899999986 465532111  11110 11                112466666666655422223


Q ss_pred             hHHHHHHHHHHHHHHhhhhc
Q psy6205         204 NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       204 ~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++.++..++.++|.+.|+++
T Consensus       386 ~~~~~~~~~a~~l~~~L~~~  405 (504)
T 2okj_A          386 NQINKCLELAEYLYAKIKNR  405 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            56778889999999998764

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=97.51  E-value=0.00026  Score=60.41  Aligned_cols=118  Identities=15%  Similarity=0.144  Sum_probs=76.3

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh-CCccccccchhhhhcCCCCCCchhccc----ccccCCc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV-GFGRVGTHWWAFQLQGDDIIPDIVTVG----KPMGNGH  157 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t-G~GrtG~~~~~~~~~g~~v~pDi~~~~----K~l~~G~  157 (224)
                      ++.+|++.+..   |.+.+.++..+.+++.        +++ |+...|+      .++  . +|+++++    |.+++| 
T Consensus       127 ~~~~v~~~~~~---G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~------~~~--~-~d~~~~S~~k~K~l~~~-  193 (393)
T 1mdo_A          127 QTKAIIPVHYA---GAPADLDAIYALGERYGIPVIEDAAHATGTSYKGR------HIG--A-RGTAIFSFHAIKNITCA-  193 (393)
T ss_dssp             TEEEECCBCGG---GCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTE------ETT--S-SSEEEEECCTTSSSCSS-
T ss_pred             CceEEEEeCCC---CCcCCHHHHHHHHHHcCCeEEEECccccCCeECCe------ecC--C-CCeEEEeCCCCCccccc-
Confidence            57888888754   4455545555555554        444 3322222      233  3 8999887    999877 


Q ss_pred             ccccceec-HHHHHhhhcC---Cc--------------cc-----ccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy6205         158 PVAAVITT-KEIAKSFQET---GV--------------EY-----FNTYGGNPVSCAVANAVMEVLETENLREHALDVGN  214 (224)
Q Consensus       158 p~~av~~~-~~i~~~~~~~---~~--------------~~-----~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~  214 (224)
                      ..|+++++ +++.+.+...   +.              .+     +..+..+++.++++++.++.++  ++.++.+++.+
T Consensus       194 ~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~  271 (393)
T 1mdo_A          194 EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLD--ALNARRAAIAA  271 (393)
T ss_dssp             SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHH
T ss_pred             cceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            46778886 7887766431   10              00     0114468999999888887764  46778888999


Q ss_pred             HHHHhhhhc
Q psy6205         215 QLHTPKKEN  223 (224)
Q Consensus       215 ~l~~~l~~l  223 (224)
                      +|.+.|+++
T Consensus       272 ~l~~~L~~~  280 (393)
T 1mdo_A          272 QYHQAMADL  280 (393)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHhcC
Confidence            999998765

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=97.51  E-value=0.0002  Score=63.64  Aligned_cols=118  Identities=14%  Similarity=0.056  Sum_probs=75.3

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchh--cccccccC--Cc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN--GH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~--G~  157 (224)
                      +++.+|+++......|.+.+.++..+.+++.        ++.    +|. .+..-.+    .+|++  +++|.+++  |+
T Consensus       216 ~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~----~g~-~~~~~~~----~~div~~S~sK~~~g~~Gl  286 (464)
T 1ibj_A          216 PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIM----SPV-LSRPLEL----GADIVMHSATKFIAGHSDV  286 (464)
T ss_dssp             SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTT----CTT-TCCGGGT----TCSEEEEETTTTTTCSSCC
T ss_pred             cCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCc----ccc-cCChhhc----CCEEEEECCcccccCCCCC
Confidence            4688999999998889888644444444444        432    222 1111113    36887  59999986  78


Q ss_pred             ccccceec-HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHH
Q psy6205         158 PVAAVITT-KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHT  218 (224)
Q Consensus       158 p~~av~~~-~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~  218 (224)
                      ++|+++++ +++.+.+...  ........+|+++.+++++|+.+.  -+...+++..+.+++++
T Consensus       287 ~~G~l~~~~~~l~~~l~~~--~~~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~  348 (464)
T 1ibj_A          287 MAGVLAVKGEKLAKEVYFL--QNSEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSS  348 (464)
T ss_dssp             CCEEEEECSHHHHHHHHHH--HHHTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEEEChHHHHHHHHHH--HHhcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            89999998 5787777532  111234457888888888876543  23345566666666654

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=97.49  E-value=0.00038  Score=61.14  Aligned_cols=142  Identities=10%  Similarity=0.099  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccc--cchhhhhcCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGT--HWWAFQLQGD  140 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~--~~~~~~~~g~  140 (224)
                      +++|++.++.   .+.+...+++.......|.+ .+.+.++++.++            +..+|+..+.  ..+....+. 
T Consensus       189 ~e~l~~~l~~---~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-  263 (448)
T 3meb_A          189 FSNTKKDIQS---APEKSIFLFHACAHNPSGID-FTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFV-  263 (448)
T ss_dssp             HHHHHHHHHH---SCTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHH-
T ss_pred             HHHHHHHHHh---CCCCcEEEEeCCCCCCCCcC-CCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHh-
Confidence            4556555542   33344455544445556765 455555666655            6667765441  123333331 


Q ss_pred             CCCCc---hhccccccc-CCcccccc--ee---------cH----HHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh
Q psy6205         141 DIIPD---IVTVGKPMG-NGHPVAAV--IT---------TK----EIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE  201 (224)
Q Consensus       141 ~v~pD---i~~~~K~l~-~G~p~~av--~~---------~~----~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~  201 (224)
                      +..++   +.+++|.+| .|+.+|++  ++         ++    ++.+.+...  ....+...++++.+++.+.|+.-+
T Consensus       264 ~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~a~~~~l~~~~  341 (448)
T 3meb_A          264 DAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQ--IRKTWSMSAIHGAYIVQVIVHDKR  341 (448)
T ss_dssp             HTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHH--HHTTTSSCCHHHHHHHHHHHTSHH
T ss_pred             hcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHH--HhcccCCccHHHHHHHHHHhcChH
Confidence            13356   447899998 58999997  55         45    555544321  112344556677777776664321


Q ss_pred             --------hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         202 --------TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       202 --------~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                              -+...++++++-++|.+.|+++
T Consensus       342 l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~  371 (448)
T 3meb_A          342 LLQMFYDNVKEMSARIHRMRSLLHASLAKR  371 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                    1356677788888888888765

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=97.43  E-value=9.7e-05  Score=65.57  Aligned_cols=77  Identities=21%  Similarity=0.210  Sum_probs=45.4

Q ss_pred             CCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecC---CCccccCCCCCCCCCChhHHHHHHHHHHH
Q psy6205           4 YPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAP---CPDVYRGKYPADKYPDEDLGVKYAQDVQD   80 (224)
Q Consensus         4 ~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp---~P~~yr~~~~~~~~~~~~~~~~~~~~l~~   80 (224)
                      ||.|+||||+|||+||||+.+ +++.|....+..+...++..+.+..+   ..+..|...+-..  +++..++.++-|++
T Consensus       374 ~~~v~~VRG~Gl~~giel~~~-~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~i--t~~~id~~l~~l~~  450 (456)
T 4atq_A          374 GSVVGDIRGRGAMLAIELVQP-GSKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVI--SDELLIDGLEVLAA  450 (456)
T ss_dssp             --CEEEEEEETTEEEEEEBCT-TSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTC--CHHHHHHHHHHHHH
T ss_pred             CCceEEeeecceEEEEEEecC-CCCCcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCC--CHHHHHHHHHHHHH
Confidence            689999999999999999865 35556555555555554444443332   2233332222111  25667777777777


Q ss_pred             HHH
Q psy6205          81 LIE   83 (224)
Q Consensus        81 ~~~   83 (224)
                      .++
T Consensus       451 al~  453 (456)
T 4atq_A          451 AIK  453 (456)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=97.41  E-value=0.00036  Score=60.36  Aligned_cols=118  Identities=13%  Similarity=0.016  Sum_probs=73.6

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchh--cccccccC
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN  155 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~  155 (224)
                      +++.+|++|.+....|.+.+.++..+.+++.            +++.+.+ .. .+   .    ..+|++  +++|.+|+
T Consensus       137 ~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~-~~-~~---~----~~~di~~~S~sK~~g~  207 (393)
T 1n8p_A          137 ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYI-SN-PL---N----FGADIVVHSATKYING  207 (393)
T ss_dssp             SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHH-CC-GG---G----GTCSEEEEETTTTTTC
T ss_pred             cCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCcccccc-CC-HH---H----cCCeEEEEECcccccC
Confidence            3678999999999999988755555555441            3332221 11 11   1    237877  69999996


Q ss_pred             -Cccc-ccceec-HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHH
Q psy6205         156 -GHPV-AAVITT-KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHT  218 (224)
Q Consensus       156 -G~p~-~av~~~-~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~  218 (224)
                       |+++ |+++++ +++.+.+....  .......+|..++++.+.++.+.+  +...++++.+.++|.+
T Consensus       208 ~G~rigG~~~~~~~~~~~~l~~~~--~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~  273 (393)
T 1n8p_A          208 HSDVVLGVLATNNKPLYERLQFLQ--NAIGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAA  273 (393)
T ss_dssp             SSCCCCEEEEESCHHHHHHHHHHH--HHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCceeEEEEeCCHHHHHHHHHHH--HhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Confidence             6788 778775 78888775431  112234478888888888876632  3344555555555443

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=97.35  E-value=0.00025  Score=60.59  Aligned_cols=122  Identities=16%  Similarity=0.182  Sum_probs=76.6

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPV  159 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~  159 (224)
                      ++..+|++++.+...|.+.+.++..+.+++.        +++ +|..     ......  . +|+++.+  | +.|..++
T Consensus       158 ~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~-~~~~-----~~~~~~--~-~d~~~~s~~K-~~g~~g~  227 (400)
T 3vax_A          158 PDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQG-YGKV-----PGDLTT--P-IDMISISGHK-IGAPKGV  227 (400)
T ss_dssp             TTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTT-TTTS-----GGGGGS--C-CSEEEEETGG-GTSCSSC
T ss_pred             CCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhh-cCCC-----CcChhh--c-CcEEEEeHHH-hCCCCce
Confidence            3678999999999999887754444444443        322 2111     112222  4 8998766  9 4444457


Q ss_pred             ccce-ecHH-HH---HhhhcC----Ccc-cccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhh
Q psy6205         160 AAVI-TTKE-IA---KSFQET----GVE-YFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       160 ~av~-~~~~-i~---~~~~~~----~~~-~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~  221 (224)
                      |+++ ++++ +.   +.+...    ... ...+.+.++.++++..++++.+++  +++.++.+++.++|.+.|+
T Consensus       228 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~  301 (400)
T 3vax_A          228 GALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA  301 (400)
T ss_dssp             EEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC
Confidence            8888 7761 11   111111    000 123555688888888899998865  6788889999999998886

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=97.34  E-value=0.00034  Score=61.63  Aligned_cols=123  Identities=10%  Similarity=-0.025  Sum_probs=78.3

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCcccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPVA  160 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~~  160 (224)
                      ++.+|++.+ +...|.+.+.++..+.+++.        ++.++-+.+...+....++    +|+++.+  |.++++.++|
T Consensus       146 ~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g----~Di~~~S~~K~l~~~~g~g  220 (446)
T 2x3l_A          146 GHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQ----ADYVVQSFHKTLPALTMGS  220 (446)
T ss_dssp             -CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGT----CSEEEECHHHHSSSCTTCE
T ss_pred             CceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcC----CCEEEECCccccccccccE
Confidence            467788887 66688888766666666665        4443111111012222333    7988766  9988777789


Q ss_pred             cceecHHHHH--hhhcCCcccccCCCCcHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHh
Q psy6205         161 AVITTKEIAK--SFQETGVEYFNTYGGNPVSCAVANAVMEVLETE---NLREHALDVGNQLHTP  219 (224)
Q Consensus       161 av~~~~~i~~--~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~---~l~~~~~~~g~~l~~~  219 (224)
                      ++++++++.+  .+... .....|.+.+...+++..++++.+++.   ++.++.+++.++++++
T Consensus       221 ~l~~~~~~i~~~~~~~~-~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~  283 (446)
T 2x3l_A          221 VLYIHKNAPYRENIIEY-LSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK  283 (446)
T ss_dssp             EEEEETTCTTHHHHHHH-HHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCcCCHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc
Confidence            9999887654  22221 122345566788888877888888653   3889999999888764

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=97.32  E-value=0.0004  Score=60.27  Aligned_cols=119  Identities=13%  Similarity=0.124  Sum_probs=76.3

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh-CCccccccchhhhhcCCCCCCchhccc----ccccCCc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV-GFGRVGTHWWAFQLQGDDIIPDIVTVG----KPMGNGH  157 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t-G~GrtG~~~~~~~~~g~~v~pDi~~~~----K~l~~G~  157 (224)
                      ++.+|++...   .|...+-++..+.+++.        +++ |+...|. .     ++  ..+|+++.+    |++++ .
T Consensus       138 ~~~~v~~~~~---tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~-~-----~~--~~~di~~~S~sk~K~l~~-~  205 (424)
T 2po3_A          138 RTSAVVGVHL---WGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGR-P-----AG--SLGDAEVFSFHATKAVNA-F  205 (424)
T ss_dssp             TEEEEEEECG---GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE-E-----TT--SSSSEEEEECCTTSSSCC-S
T ss_pred             CCcEEEEECC---CCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCe-e-----cc--cccCEEEEeCCCCCCccC-C
Confidence            5677776542   34444444555555554        666 6654443 1     22  336888776    99987 4


Q ss_pred             ccccceec-HHHHHhhhcC---Cc-------ccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITT-KEIAKSFQET---GV-------EYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~-~~i~~~~~~~---~~-------~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .+|+++++ +++++.+...   ..       .++.++..+++++++++..++.++  .+.++.+++.++|.+.|+++
T Consensus       206 ~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~--~~~~~~~~~~~~l~~~L~~~  280 (424)
T 2po3_A          206 EGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFP--EVIDRNRRNHAAYREHLADL  280 (424)
T ss_dssp             SCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTCSC
T ss_pred             CCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC
Confidence            67889998 8887766421   10       011233456889998888777664  37888889999999988764

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=97.32  E-value=0.0011  Score=56.30  Aligned_cols=120  Identities=18%  Similarity=0.172  Sum_probs=78.1

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc----ccccC-Cc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG----KPMGN-GH  157 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~----K~l~~-G~  157 (224)
                      ++.+|++..   ..|...+.++..+.+++.        +++ +   |. .+..+.++  ..+|++++|    |.+++ |.
T Consensus       124 ~~~~v~~~n---~~G~~~~l~~i~~l~~~~~~~li~D~a~~-~---g~-~~~~~~~~--~~~d~~~~S~~~~K~l~~~g~  193 (373)
T 3frk_A          124 KTKAIIAVH---LYGQPADMDEIKRIAKKYNLKLIEDAAQA-H---GS-LYKGMKVG--SLGDAAGFSFYPAKNLGSLGD  193 (373)
T ss_dssp             TEEEEEEEC---CTTCCCCHHHHHHHHHHHTCEEEEECTTC-T---TC-EETTEETT--SSSSEEEEECCTTSSSCCSSS
T ss_pred             CCeEEEEEC---CCcCcccHHHHHHHHHHcCCEEEEECCcc-c---CC-EECCEecc--ccccEEEEeCcCCCccCccce
Confidence            567777433   456666666666666665        443 1   22 22333454  668999988    99987 64


Q ss_pred             ccccceec-HHHHHhhhc---CC-------cccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITT-KEIAKSFQE---TG-------VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~-~~i~~~~~~---~~-------~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                       .|+++++ +++.+.+..   .+       ...+.++..+++.+|++++.++.++  .+.++.+++.+++.+.|+++
T Consensus       194 -gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~  267 (373)
T 3frk_A          194 -GGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLD--KWNEERRKIAQKYIAGINNP  267 (373)
T ss_dssp             -CEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHCCCT
T ss_pred             -eEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC
Confidence             5666665 456555432   11       0123566779999999888877664  47888999999999998765

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=97.31  E-value=0.00086  Score=56.16  Aligned_cols=128  Identities=15%  Similarity=0.176  Sum_probs=68.7

Q ss_pred             CceEEEEccccCCC-CcccCCHHHHHHHHHH-HHhCCc-cc-ccc-chhhhhcCCC-----CCCc--hhcccccccCCcc
Q psy6205          91 RPCAFFAESLQSCG-GQIIPPANYLREVYKH-VQVGFG-RV-GTH-WWAFQLQGDD-----IIPD--IVTVGKPMGNGHP  158 (224)
Q Consensus        91 ~iaavi~Epv~~~~-G~~~~~~~~l~~~~~~-v~tG~G-rt-G~~-~~~~~~~g~~-----v~pD--i~~~~K~l~~G~p  158 (224)
                      ++.+|++++.+... |.+ .+.+.++++.++ -+.|.= -. +.. +++....+..     ...|  +++++|.+++  |
T Consensus       132 ~~~~v~~~~~~npt~G~~-~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~--~  208 (347)
T 1jg8_A          132 RTSLIAIENTHNRSGGRV-VPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCA--P  208 (347)
T ss_dssp             CEEEEEEESSBTTTTSBC-CCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCC--S
T ss_pred             CceEEEEeccccccCCcc-CcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCC--C
Confidence            67899999988876 754 455556655555 111100 00 000 0011111100     1123  3459999975  4


Q ss_pred             ccc-ceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         159 VAA-VITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       159 ~~a-v~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|+ +++++++.+.+......+.+++..+++.++++.+.|+...+ . .++..+..+++.+.|+++
T Consensus       209 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~l~~~L~~~  272 (347)
T 1jg8_A          209 VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVD-R-LKEDHENARFLALKLKEI  272 (347)
T ss_dssp             SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSST-T-HHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHhc
Confidence            674 56788887765421112334555677888888888876533 2 233445567777777653

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=97.28  E-value=0.00029  Score=60.40  Aligned_cols=123  Identities=13%  Similarity=0.019  Sum_probs=72.2

Q ss_pred             CCceE-EEEccccCCCCcccCCHHHHHHHHHH-HHhCC-----ccccccch---hhh--hcCCCCCCchhc--ccccccC
Q psy6205          90 KRPCA-FFAESLQSCGGQIIPPANYLREVYKH-VQVGF-----GRVGTHWW---AFQ--LQGDDIIPDIVT--VGKPMGN  155 (224)
Q Consensus        90 ~~iaa-vi~Epv~~~~G~~~~~~~~l~~~~~~-v~tG~-----GrtG~~~~---~~~--~~g~~v~pDi~~--~~K~l~~  155 (224)
                      +++.+ |+++.....+|.   ....++++.++ -..|.     ..+|. ++   ..+  ...  ..+|+++  ++|.++|
T Consensus       139 ~~~~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~-~~~~~~~~~~~~~--~~~di~~~S~sK~l~g  212 (374)
T 2aeu_A          139 DKDTLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGA-RVRLLFNQPPALK--LGADLVVTSTDKLMEG  212 (374)
T ss_dssp             CTTEEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHH-HHHHHTTCCCHHH--HTCSEEEEETTSSSSS
T ss_pred             CCccEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCccc-ccccccccCCccc--cCCcEEEecCcccccC
Confidence            46788 999988777774   34455555555 00000     01111 11   001  111  2368875  8999875


Q ss_pred             CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHH----HHHHHHhhh
Q psy6205         156 GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDV----GNQLHTPKK  221 (224)
Q Consensus       156 G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~----g~~l~~~l~  221 (224)
                       ..+|++++++++++.+...  ....+.+.+|++++++.++|+.+..   ..+.++.+.+    -+.|.+.|.
T Consensus       213 -~~~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  282 (374)
T 2aeu_A          213 -PRGGLLAGKKELVDKIYIE--GTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELK  282 (374)
T ss_dssp             -CSCEEEEEEHHHHHHHHHH--HHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHT
T ss_pred             -cceEEEEECHHHHHHHHHh--hccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             6788899999999887642  1112345789999999999998743   2333444444    244555444

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.00099  Score=59.03  Aligned_cols=128  Identities=9%  Similarity=-0.073  Sum_probs=79.6

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccc-------ccc-chhhhhcCCCCCCchhcc--ccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRV-------GTH-WWAFQLQGDDIIPDIVTV--GKP  152 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~Grt-------G~~-~~~~~~~g~~v~pDi~~~--~K~  152 (224)
                      ++++|+++......|.+.+.++..+.+++.        ++.|+.+.       |.. -+.+...|  +  |++++  .|.
T Consensus       206 ~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g--~--d~~~~s~~K~  281 (497)
T 3mc6_A          206 NTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPG--V--TSISCDTHKY  281 (497)
T ss_dssp             SEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTT--C--CEEEEETTTT
T ss_pred             CCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCC--C--cEEEECchhh
Confidence            578999999888889998888777777776        44444332       110 13333444  3  66654  488


Q ss_pred             ccCCcccccceecHHHHHhhhcCC-cc-c-----ccCCC--CcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhh
Q psy6205         153 MGNGHPVAAVITTKEIAKSFQETG-VE-Y-----FNTYG--GNPVSCAVANAVMEVLET---ENLREHALDVGNQLHTPK  220 (224)
Q Consensus       153 l~~G~p~~av~~~~~i~~~~~~~~-~~-~-----~~T~~--~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~~l  220 (224)
                      +.++.++|+++++++.+....... .. .     ..++.  .+....++..++++.+.+   +++.+++.++.+++.+.|
T Consensus       282 l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L  361 (497)
T 3mc6_A          282 GFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYI  361 (497)
T ss_dssp             TCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            877888999999887765442110 00 0     01111  122334455556666644   356778888999999999


Q ss_pred             hh
Q psy6205         221 KE  222 (224)
Q Consensus       221 ~~  222 (224)
                      ++
T Consensus       362 ~~  363 (497)
T 3mc6_A          362 QE  363 (497)
T ss_dssp             HH
T ss_pred             Hh
Confidence            87

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=97.15  E-value=0.00071  Score=58.68  Aligned_cols=119  Identities=14%  Similarity=0.122  Sum_probs=75.4

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH---------HHhCCccccccchhhhhcCCCCCCchh--cccccccC-C-
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH---------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN-G-  156 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~---------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~-G-  156 (224)
                      +++.+|++|......|.+.+.++..+.+++.         ++..+ ..      ...+.  ..+|++  +++|.++| | 
T Consensus       150 ~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~-~~------~~~~~--~~~div~~S~sK~~~g~~~  220 (403)
T 3cog_A          150 PETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSP-YF------QRPLA--LGADISMYSATKYMNGHSD  220 (403)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCT-TT------CCTTT--TTCSEEEEETTTTTTCSSC
T ss_pred             cCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCccc-cc------CCccc--cCCeEEEEcChhhccCCCC
Confidence            3678999999998889888633333333221         22111 00      11222  457888  68999985 4 


Q ss_pred             cccccceec-HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHh
Q psy6205         157 HPVAAVITT-KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTP  219 (224)
Q Consensus       157 ~p~~av~~~-~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~  219 (224)
                      ..+|+++++ +++.+.+...  ....+...+|+.++++++.|+.+..  +...+++..+.+++.+.
T Consensus       221 ~~~G~v~~~~~~l~~~l~~~--~~~~g~~~~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~l~~~  284 (403)
T 3cog_A          221 VVMGLVSVNCESLHNRLRFL--QNSLGAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESN  284 (403)
T ss_dssp             CCCEEEEECCHHHHHHHHHH--HHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEEECcHHHHHHHHHH--HHhcCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            578999984 7888877542  2234566789999998888877632  44555666666666543

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=97.13  E-value=0.001  Score=56.35  Aligned_cols=120  Identities=18%  Similarity=0.214  Sum_probs=75.5

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc----ccccC-Cc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG----KPMGN-GH  157 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~----K~l~~-G~  157 (224)
                      ++.+|+  |. ...|.+.+.++..+.+++.        +++    .|. .+..+..+  ..+|+++++    |.+++ |.
T Consensus       125 ~~~~v~--~~-n~~G~~~~~~~i~~~~~~~~~~li~D~~~~----~g~-~~~~~~~~--~~~d~~~~s~~~~K~l~~~g~  194 (374)
T 3uwc_A          125 KTKAIM--PV-HYTGNIADMPALAKIAKKHNLHIVEDACQT----ILG-RINDKFVG--SWGQFACFSLHPLKNLNVWSD  194 (374)
T ss_dssp             TEEEEC--CB-CGGGCCCCHHHHHHHHHHTTCEEEEECTTC----TTC-EETTEETT--SSSSEEEEECSSSSSSCCSSC
T ss_pred             CceEEE--Ee-CCcCCcCCHHHHHHHHHHcCCEEEEeCCCc----cCc-eeCCeecc--ccccEEEEeCCCCCcCCccce
Confidence            556666  33 2456666555555555554        433    222 23344555  668999988    99988 75


Q ss_pred             ccccceec-HHHHHhhhcC---C-------cccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITT-KEIAKSFQET---G-------VEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~-~~i~~~~~~~---~-------~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                       .|+++++ +++.+.+...   +       .....++..+++.++++++.++.++  ++.++.+++.+++.+.|+++
T Consensus       195 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~  268 (374)
T 3uwc_A          195 -AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLE--TITEKRRGIAHLYDQSFVDL  268 (374)
T ss_dssp             -CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHTGGG
T ss_pred             -eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC
Confidence             6667765 4665554321   1       0123455678888888887776664  47888999999999998865

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=97.05  E-value=0.0024  Score=53.39  Aligned_cols=122  Identities=11%  Similarity=0.032  Sum_probs=69.2

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCc--cccccchhhhhcCCCCCCchhc--cccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFG--RVGTHWWAFQLQGDDIIPDIVT--VGKPMG  154 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~G--rtG~~~~~~~~~g~~v~pDi~~--~~K~l~  154 (224)
                      ++++|++++.. +.|. ..+.++++++.++            ++..+.  ..|.   ....++.....|+++  ++|.  
T Consensus       141 ~~~~v~~~~~~-~tG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~---~~~~~~~~~~~d~~~~s~sK~--  213 (356)
T 1v72_A          141 QPACVSITQAT-EVGS-IYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGC---SPAEMTWKAGVDALSFGATKN--  213 (356)
T ss_dssp             EEEEEEEESSC-TTSC-CCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC---CTTTTTGGGTCCEEEECCGGG--
T ss_pred             CceEEEEEcCC-CCCc-cCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCC---CHHHhhhhhcCCEEEEecccC--
Confidence            68999999954 5775 4678899999888            221110  0010   000010001245544  6787  


Q ss_pred             CCcccc--cceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHhhhhc
Q psy6205         155 NGHPVA--AVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETE---NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 ~G~p~~--av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~---~l~~~~~~~g~~l~~~l~~l  223 (224)
                       |.|+|  ++++++++++.+.... .+.++....  +..++.++++.++++   ++.++.+++.++|.+.|+++
T Consensus       214 -g~~~G~g~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~  283 (356)
T 1v72_A          214 -GVLAAEAIVLFNTSLATEMSYRR-KRAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL  283 (356)
T ss_dssp             -TCSSCEEEEESSGGGHHHHHHHH-HHTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             -CCcCccEEEEECHHHHhhHHHHh-hccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence             34887  6667888887764310 111222211  223444566666553   46778889999999998763

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=97.04  E-value=0.0058  Score=54.40  Aligned_cols=143  Identities=15%  Similarity=0.133  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCcccc-ccchhh----hh
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVG-THWWAF----QL  137 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG-~~~~~~----~~  137 (224)
                      +++|++.++.....+.++.+|++.-.....|.+.+ .+-++++.++            +...+...+ ..+..+    ..
T Consensus       221 ~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s-~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~  299 (500)
T 3tcm_A          221 TSDVKKQLEDARSRGINVRALVVINPGNPTGQVLA-EENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRS  299 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCC-HHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHH
Confidence            45666666543223335666665543444665544 4456665554            444431111 101111    12


Q ss_pred             cCCCC-CCc---hh--cccccc-c-CCccccccee---cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHH--------
Q psy6205         138 QGDDI-IPD---IV--TVGKPM-G-NGHPVAAVIT---TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVME--------  198 (224)
Q Consensus       138 ~g~~v-~pD---i~--~~~K~l-~-~G~p~~av~~---~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~--------  198 (224)
                      ++  . ..|   ++  ++||++ | .|+.+|++++   ++++++.+...   ...++..++.+.+++.++|+        
T Consensus       300 ~~--~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~  374 (500)
T 3tcm_A          300 LG--YGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKI---ASVNLCSNITGQILASLVMNPPKASDES  374 (500)
T ss_dssp             TT--CSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHH---HHTTCCCCHHHHHHHHHHHSCCCSSSTH
T ss_pred             hc--cccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHH---HhcccCCCHHHHHHHHHHhcCccccchh
Confidence            32  1 222   33  789999 4 4889999998   88998887642   22455667888888877775        


Q ss_pred             ---HHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         199 ---VLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       199 ---~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                         ..+ .+.+.++++++.++|.+.|+++
T Consensus       375 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~  403 (500)
T 3tcm_A          375 YASYKAEKDGILASLARRAKALEHAFNKL  403 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               332 3567788888899999988765

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=96.96  E-value=0.0012  Score=59.55  Aligned_cols=73  Identities=11%  Similarity=-0.019  Sum_probs=44.3

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-------------HHhCCccccccchhhhhcCCCCCCchhccccccc-CC
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMG-NG  156 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~-~G  156 (224)
                      ++.+|++.......|.+.+ .+.++++.++             ++.+|...+. .......+  ....+.+++|.+| .|
T Consensus       244 ~~k~v~l~~p~NPtG~~~~-~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~-~~~~~~~~--~~i~~~S~SK~~g~~G  319 (533)
T 3f6t_A          244 SIKALIVVNPTNPTSKEFD-TNALNAIKQAVEKNPKLMIISDEVYGAFVPNFK-SIYSVVPY--NTMLVYSYSKLFGCTG  319 (533)
T ss_dssp             TEEEEEEESSCTTTCBCCC-HHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCC-CHHHHSGG--GEEEEEESHHHHTCGG
T ss_pred             CCeEEEEeCCCCCCccccC-HHHHHHHHHHHHhCCCCEEEEcCCccccccCcc-CHhhcCCC--CEEEEecCcccCCCcc
Confidence            5667777644555776654 4445555443             5555644332 11111122  4455678999998 68


Q ss_pred             cccccceecHH
Q psy6205         157 HPVAAVITTKE  167 (224)
Q Consensus       157 ~p~~av~~~~~  167 (224)
                      +.+|+++++++
T Consensus       320 ~RiG~l~~~~~  330 (533)
T 3f6t_A          320 WRLGVIALNEK  330 (533)
T ss_dssp             GCEEEEEEESS
T ss_pred             cceEEEEECcH
Confidence            99999999877

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=96.93  E-value=0.002  Score=55.06  Aligned_cols=84  Identities=13%  Similarity=0.018  Sum_probs=56.3

Q ss_pred             hhcCCCCCCchhcccccccCCc--c-cccceecH-HHHHhhh---cCC--cc------------------------cccC
Q psy6205         136 QLQGDDIIPDIVTVGKPMGNGH--P-VAAVITTK-EIAKSFQ---ETG--VE------------------------YFNT  182 (224)
Q Consensus       136 ~~~g~~v~pDi~~~~K~l~~G~--p-~~av~~~~-~i~~~~~---~~~--~~------------------------~~~T  182 (224)
                      +.+|  +.+|+.+++|..+.++  + .|++++++ ++.+.+.   ..+  ..                        .+.+
T Consensus       173 ~~~g--~~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  250 (390)
T 3b8x_A          173 KCAG--TFGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYN  250 (390)
T ss_dssp             EETT--SSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCB
T ss_pred             cccc--cccceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccc
Confidence            4556  7889999886554332  2 35566664 6655432   111  00                        1234


Q ss_pred             CCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         183 YGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       183 ~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +..+++.++++++.|+.++  +..++.+++.+++.+.|+++
T Consensus       251 ~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~  289 (390)
T 3b8x_A          251 VRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKDH  289 (390)
T ss_dssp             CCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTC
T ss_pred             cCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC
Confidence            5588999999999998875  57888899999999998764

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=96.89  E-value=0.0022  Score=54.61  Aligned_cols=119  Identities=15%  Similarity=0.025  Sum_probs=71.8

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh-CCccccccchhhhhcCCCCCCchhccc----ccccCCc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV-GFGRVGTHWWAFQLQGDDIIPDIVTVG----KPMGNGH  157 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t-G~GrtG~~~~~~~~~g~~v~pDi~~~~----K~l~~G~  157 (224)
                      ++.+|+  |... .|.+.+.++..+.+++.        +++ |+...|. .  ...+     +|+++++    |.++|| 
T Consensus       126 ~~~~v~--~~n~-tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~-~--~~~~-----~~i~~~S~s~~K~l~g~-  193 (388)
T 1b9h_A          126 RTKVIM--PVHM-AGLMADMDALAKISADTGVPLLQDAAHAHGARWQGK-R--VGEL-----DSIATFSFQNGKLMTAG-  193 (388)
T ss_dssp             TEEEEC--CBCG-GGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTE-E--GGGS-----SSCEEEECCTTSSSCSS-
T ss_pred             CceEEE--EeCC-ccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCe-e--cccc-----cceEEEEccCCCcccCC-
Confidence            455655  5443 46666656666666665        443 3322232 1  1122     3666666    999876 


Q ss_pred             ccccceecHH-H--HHhhhc---CCc----------ccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         158 PVAAVITTKE-I--AKSFQE---TGV----------EYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       158 p~~av~~~~~-i--~~~~~~---~~~----------~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      ..|+++++++ +  ++.+..   .+.          ..+.++..+++.++++++.++.+++  ..++.+++.+++.+.|+
T Consensus       194 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~--~~~~~~~~~~~l~~~L~  271 (388)
T 1b9h_A          194 EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDE--QIAVRDERWTLLSRLLG  271 (388)
T ss_dssp             SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhc
Confidence            4688888875 6  555421   100          0123345788888888887777654  67778888899988887


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       272 ~~  273 (388)
T 1b9h_A          272 AI  273 (388)
T ss_dssp             TS
T ss_pred             cC
Confidence            64

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=96.85  E-value=0.0027  Score=54.15  Aligned_cols=121  Identities=18%  Similarity=0.156  Sum_probs=74.0

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc----ccccCCc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG----KPMGNGH  157 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~----K~l~~G~  157 (224)
                      +++.+|++...   .|...+.++..+.+++.        +++    .|. .+.....+  ..+|+++++    |++++|.
T Consensus       143 ~~~~~v~~~n~---tG~~~~~~~i~~l~~~~~~~li~D~a~~----~g~-~~~~~~~~--~~~di~~~S~s~~K~l~~g~  212 (391)
T 3dr4_A          143 PRTKAIMPVHL---YGQICDMDPILEVARRHNLLVIEDAAEA----VGA-TYRGKKSG--SLGDCATFSFFGNAIITTGE  212 (391)
T ss_dssp             TTEEEECCBCG---GGCCCCHHHHHHHHHHTTCEEEEECTTC----TTC-EETTEETT--SSSSEEEEECBTTSSSCCBS
T ss_pred             CCceEEEEECC---CCChhhHHHHHHHHHHcCCEEEEECccc----ccc-eECCeeec--ccCCEEEEECCCCCcCCcCC
Confidence            35677775543   35555544544444444        333    121 12222333  557999888    9998763


Q ss_pred             ccccceec-HHHHHhhhcC---Cc---------ccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         158 PVAAVITT-KEIAKSFQET---GV---------EYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       158 p~~av~~~-~~i~~~~~~~---~~---------~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                       .|+++++ +++.+.+...   +.         ....++..+++.+|+++..++.+++  +.++.+++.+++++.|+++
T Consensus       213 -gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~--~~~~~~~~~~~l~~~L~~~  288 (391)
T 3dr4_A          213 -GGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDE--HLAARERVVGWYEQKLARL  288 (391)
T ss_dssp             -CEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHH--HHHHHHHHHHHHHHHHGGG
T ss_pred             -eEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcC
Confidence             5666665 5566554321   10         1123477889999888888776644  7888899999999998865

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=96.84  E-value=0.002  Score=54.12  Aligned_cols=123  Identities=13%  Similarity=0.063  Sum_probs=75.5

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCchhcc--cccccCCcccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDIVTV--GKPMGNGHPVA  160 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~--~K~l~~G~p~~  160 (224)
                      ++..+|+++..+...|.+.+.++..+.+++.       ++ ++|..   .+..+.++    +|++++  +|.+ |+..+|
T Consensus       137 ~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~li~D~a~-~~~~~---~~~~~~~~----~d~~~~s~~K~~-g~~g~g  207 (382)
T 4hvk_A          137 DDTILVSVQHANNEIGTIQPVEEISEVLAGKAALHIDATA-SVGQI---EVDVEKIG----ADMLTISSNDIY-GPKGVG  207 (382)
T ss_dssp             TTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSEEEEECTT-TBTTB---CCCHHHHT----CSEEEEESGGGT-SCTTCE
T ss_pred             cCceEEEEECCCCCceeeCCHHHHHHHHHHcCEEEEEhHH-hcCCC---CCCchhcC----CCEEEEeHHHhc-CCCceE
Confidence            3568999999999899887744333333332       11 11111   11122223    677765  5954 333578


Q ss_pred             cceecHHHHHhhhcCC-----cccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         161 AVITTKEIAKSFQETG-----VEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       161 av~~~~~i~~~~~~~~-----~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +++++++.  .+....     .....+.+.++.++++..++++.+++  +++.++.+++.++|.+.|+++
T Consensus       208 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~  275 (382)
T 4hvk_A          208 ALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI  275 (382)
T ss_dssp             EEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             EEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            88887764  222110     01113555688899999899987764  578888999999999998764

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=96.80  E-value=0.0032  Score=54.93  Aligned_cols=127  Identities=10%  Similarity=-0.062  Sum_probs=75.0

Q ss_pred             CceEEEEcc----ccCCCCcccCCHHHHHHHHH--H-----HHhCCccccccchhhhhcCCCCCCchh--cccccccCC-
Q psy6205          91 RPCAFFAES----LQSCGGQIIPPANYLREVYK--H-----VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGNG-  156 (224)
Q Consensus        91 ~iaavi~Ep----v~~~~G~~~~~~~~l~~~~~--~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~G-  156 (224)
                      +..+|++|.    .....|.+.+.++..+.+++  .     |-.-++ .+.  +..+...  ...|++  +++|.++|+ 
T Consensus       159 ~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~-~~~--~~~~p~~--~g~Div~~S~sK~lgg~~  233 (409)
T 3jzl_A          159 KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYG-EFV--EYQEPPE--VGADIIAGSLIKNPGGGL  233 (409)
T ss_dssp             TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTC-TTT--SSCCSGG--GTCSEEEEETTSGGGTTT
T ss_pred             CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcc-ccc--ccCCccc--cCCeEEEECccccCCccC
Confidence            578999998    77778888777777777777  3     100011 110  0111111  235877  589999875 


Q ss_pred             cc-cccceecHHHHHhhhcC--CcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhcC
Q psy6205         157 HP-VAAVITTKEIAKSFQET--GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       157 ~p-~~av~~~~~i~~~~~~~--~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      -| .|.+++++++.+.+...  ......+.+..+..+.+++..|+.+  +...++..+...++.+.|++++
T Consensus       234 ~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g  302 (409)
T 3jzl_A          234 AKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFG  302 (409)
T ss_dssp             CSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CceEEEEEeCHHHHHHHHHHhccccccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCC
Confidence            34 47788999999988652  1112223333332233444444433  4567777888888888888764

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=96.78  E-value=0.0053  Score=51.70  Aligned_cols=119  Identities=14%  Similarity=0.145  Sum_probs=73.5

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchh--ccc--ccccCCcc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIV--TVG--KPMGNGHP  158 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~--~~~--K~l~~G~p  158 (224)
                      ++.+|++...   .|.+.+.++..+.+++.        +++ +|...    ....++  ..+|++  +++  |.++.|  
T Consensus       121 ~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~-~~~~~----~~~~~~--~~~~i~~~s~s~~K~~~~g--  188 (375)
T 2fnu_A          121 RTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHA-LGSEY----QNKKVG--GFALASVFSFHAIKPITTA--  188 (375)
T ss_dssp             TEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTC-TTCEE----TTEETT--SSSSEEEEECCTTSSSCCS--
T ss_pred             CceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccc-cCCeE----CCeecc--ccCCeEEEeCCCCCCcccc--
Confidence            4566555443   57777666666666665        443 32221    112233  335655  677  999654  


Q ss_pred             cccceec--HHHHHhhhcC---Cc-----------ccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         159 VAAVITT--KEIAKSFQET---GV-----------EYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       159 ~~av~~~--~~i~~~~~~~---~~-----------~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +|+++++  +++++.+...   +.           ....++..+++.+++++..++.++  ++.++.+++.++|.+.|++
T Consensus       189 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~L~~  266 (375)
T 2fnu_A          189 EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAP--FLMQKREEAALTYDRIFKD  266 (375)
T ss_dssp             SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTT
T ss_pred             CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence            6777774  7787665431   10           012345778998888887766553  5788889999999999986


Q ss_pred             c
Q psy6205         223 N  223 (224)
Q Consensus       223 l  223 (224)
                      +
T Consensus       267 ~  267 (375)
T 2fnu_A          267 N  267 (375)
T ss_dssp             C
T ss_pred             C
Confidence            4

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=96.53  E-value=0.018  Score=49.14  Aligned_cols=133  Identities=16%  Similarity=0.169  Sum_probs=69.6

Q ss_pred             CCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccc--cchhhhhcCCCCCCch---hcccc
Q psy6205          89 GKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGT--HWWAFQLQGDDIIPDI---VTVGK  151 (224)
Q Consensus        89 ~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~--~~~~~~~~g~~v~pDi---~~~~K  151 (224)
                      ..+..++++...+...|.+ .+.+.++++.++            +..+|+..+.  ..+....+. +..+++   .+++|
T Consensus       173 ~~~~~~v~i~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~sK  250 (401)
T 7aat_A          173 PEKSIILLHACAHNPTGVD-PRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFI-EQGIDVVLSQSYAK  250 (401)
T ss_dssp             CTTCEEEEESSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH-HTTCCCEEEEECTT
T ss_pred             CCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHH-hcCCcEEEEecCCc
Confidence            3456777777766667764 455556666555            4444543321  012222220 133454   47999


Q ss_pred             ccc-CCccccccee---cHHHHHhhhcCC-c-ccccCCCCcHHHHHHHHHHHHH-------Hh-hhhHHHHHHHHHHHHH
Q psy6205         152 PMG-NGHPVAAVIT---TKEIAKSFQETG-V-EYFNTYGGNPVSCAVANAVMEV-------LE-TENLREHALDVGNQLH  217 (224)
Q Consensus       152 ~l~-~G~p~~av~~---~~~i~~~~~~~~-~-~~~~T~~~~p~~~aaa~a~l~~-------~~-~~~l~~~~~~~g~~l~  217 (224)
                      .+| .|+.+|++++   +++..+.+.... . ....+.+.+..+.+++.+.++.       .+ -+...++++++-++|.
T Consensus       251 ~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~  330 (401)
T 7aat_A          251 NMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLV  330 (401)
T ss_dssp             TSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998 6888898775   666433332110 0 1112223334444444434421       11 2345667777888888


Q ss_pred             Hhhhhc
Q psy6205         218 TPKKEN  223 (224)
Q Consensus       218 ~~l~~l  223 (224)
                      +.|+++
T Consensus       331 ~~L~~~  336 (401)
T 7aat_A          331 SNLKKE  336 (401)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            888765

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=96.52  E-value=0.0047  Score=52.08  Aligned_cols=124  Identities=13%  Similarity=0.062  Sum_probs=73.2

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCccccccchhhhhcCCCCCCchhcc--cccccCCccccc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGRVGTHWWAFQLQGDDIIPDIVTV--GKPMGNGHPVAA  161 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~--~K~l~~G~p~~a  161 (224)
                      ++.+|+++..+...|.+.+.++..+.+++.       ++. +|...   +....+    .+|+++.  +|.+|- ..+|+
T Consensus       138 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~i~D~a~~-~g~~~---~~~~~~----~~di~~~s~sK~~g~-~g~G~  208 (382)
T 4eb5_A          138 DTILVSVQHANNEIGTIQPVEEISEVLAGKAALHIDATAS-VGQIE---VDVEKI----GADMLTISSNDIYGP-KGVGA  208 (382)
T ss_dssp             TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEEEEECTTT-BTTBC---CCHHHH----TCSEEEEETGGGTCC-SSCEE
T ss_pred             CCeEEEEeccCCCccccCCHHHHHHHHHHCCCEEEEcchh-cCCcc---cCcccc----CCCEEEeehHHhcCC-CceEE
Confidence            577899999998889887744443333332       211 22111   111122    3687754  696431 12688


Q ss_pred             ceecHHH-HHhhhcCC-c-ccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         162 VITTKEI-AKSFQETG-V-EYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       162 v~~~~~i-~~~~~~~~-~-~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++++++. +..+.... . ....+++.++.+++++.++|+.+++  +.+.++.+++.+++.+.|+++
T Consensus       209 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~  275 (382)
T 4eb5_A          209 LWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI  275 (382)
T ss_dssp             EEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             EEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence            8888763 11111000 0 1123345677788888888988765  467788889999999998764

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=96.39  E-value=0.0035  Score=58.55  Aligned_cols=140  Identities=7%  Similarity=0.047  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHccCCCC---ceEEEEccccCCCCcccCCHHHHHHHHHH------H-HhCCccccccchh-hhhcCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKR---PCAFFAESLQSCGGQIIPPANYLREVYKH------V-QVGFGRVGTHWWA-FQLQGDDII  143 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~---iaavi~Epv~~~~G~~~~~~~~l~~~~~~------v-~tG~GrtG~~~~~-~~~~g~~v~  143 (224)
                      .++|++.++.   +++.   .+.|++.|  ...|.+.+.++..+.+++.      . ..|+ ..+. .+. ......+..
T Consensus       282 ~e~Le~~l~~---~~~~k~p~~vivt~p--n~~G~v~dl~~I~ela~~~~livDEAH~~~~-~f~~-~~~~~~al~~g~~  354 (715)
T 3n75_A          282 HATIAKRVKE---TPNATWPVHAVITNS--TYDGLLYNTDFIKKTLDVKSIHFDSAWVPYT-NFSP-IYEGKCGMSGGRV  354 (715)
T ss_dssp             HHHHHHHHHH---STTCCSCSEEEEESS--CTTSEEECHHHHHHHCCCSEEEEECTTCTTG-GGSG-GGTTSSTTSSSCC
T ss_pred             HHHHHHHHhh---CcCccCceEEEEECC--CCCCccCCHHHHHHHhCcCcEEEcccccccc-ccCC-ccccccccccCcC
Confidence            4667777763   3221   15677788  6678877655444333222      1 1121 1111 110 011110123


Q ss_pred             Cchh-----cccccccCCc-ccccceecHHHHH-hhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHH
Q psy6205         144 PDIV-----TVGKPMGNGH-PVAAVITTKEIAK-SFQETGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVG  213 (224)
Q Consensus       144 pDi~-----~~~K~l~~G~-p~~av~~~~~i~~-~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g  213 (224)
                      +|++     +++|.|+| + .-|.+.+++++.. .+. .......|.+-++..+|+..++++++++   +++.+++.++.
T Consensus       355 aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~-~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a  432 (715)
T 3n75_A          355 EGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFN-EAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERA  432 (715)
T ss_dssp             TTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHH-HHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHH-HHHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            6864     58999864 1 1133555544211 122 1123456788999999999999999963   47899999999


Q ss_pred             HHHHHhhhhc
Q psy6205         214 NQLHTPKKEN  223 (224)
Q Consensus       214 ~~l~~~l~~l  223 (224)
                      ++|+++|+++
T Consensus       433 ~~~r~~L~~i  442 (715)
T 3n75_A          433 IKFRKEIKRL  442 (715)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999764

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=96.11  E-value=0.021  Score=50.01  Aligned_cols=139  Identities=9%  Similarity=-0.021  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEcc----ccCCCCcccCCHHHHHHHHH--H-----HHhCCccccccchhhhhcCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAES----LQSCGGQIIPPANYLREVYK--H-----VQVGFGRVGTHWWAFQLQGDDII  143 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Ep----v~~~~G~~~~~~~~l~~~~~--~-----v~tG~GrtG~~~~~~~~~g~~v~  143 (224)
                      +++|++.++.   + ++..+|++|+    ..+..|.+.+-+++.+.+++  .     |-.-++ ++.  +..+...  ..
T Consensus       164 ~e~l~~~i~~---~-~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~-~~~--~~~~p~~--~g  234 (427)
T 3hvy_A          164 INTVKEELKK---D-DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYG-EFV--EEKEPTD--VG  234 (427)
T ss_dssp             HHHHHHHHHH---C-TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTC-TTT--SSSCGGG--GT
T ss_pred             HHHHHHHhhC---C-CCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCcc-ccc--cCCCCcc--cC
Confidence            4556665542   1 3678999999    56666776666666666666  2     100010 110  0011111  22


Q ss_pred             Cchh--cccccccCC-cc-cccceecHHHHHhhhcC--CcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy6205         144 PDIV--TVGKPMGNG-HP-VAAVITTKEIAKSFQET--GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH  217 (224)
Q Consensus       144 pDi~--~~~K~l~~G-~p-~~av~~~~~i~~~~~~~--~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~  217 (224)
                      .|++  +++|.++|+ -| .|.+++++++.+.+...  ....+.+.+.++..+..++..|+.+  +...++..+...++.
T Consensus       235 aDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la  312 (427)
T 3hvy_A          235 ADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCA  312 (427)
T ss_dssp             CSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred             CeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHH
Confidence            5776  689999875 34 47788899999888652  1122222222122234444444433  346777778888888


Q ss_pred             HhhhhcC
Q psy6205         218 TPKKENN  224 (224)
Q Consensus       218 ~~l~~l~  224 (224)
                      +.|++++
T Consensus       313 ~~L~~~g  319 (427)
T 3hvy_A          313 RIMELAG  319 (427)
T ss_dssp             HHHHHTT
T ss_pred             HHHHhCC
Confidence            8887654

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=96.01  E-value=0.017  Score=49.62  Aligned_cols=120  Identities=16%  Similarity=0.104  Sum_probs=69.9

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhc--c--cccccCCcc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVT--V--GKPMGNGHP  158 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~--~K~l~~G~p  158 (224)
                      ++.+|++....   |...+-++..+.+++.        +++.+.+..     ....+  ..+|+++  +  +|.+++| .
T Consensus       130 ~~~~v~~~~~~---G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~-----~~~~~--~~~~~~~~s~s~~K~~~~g-~  198 (418)
T 2c81_A          130 KTKAIIPVHLF---GSMANMDEINEIAQEHNLFVIEDCAQSHGSVWN-----NQRAG--TIGDIGAFSCQQGKVLTAG-E  198 (418)
T ss_dssp             TEEEECCBCCT---TCCCCHHHHHHHHHHTTCEEEEECTTCTTCEET-----TEETT--SSSSEEEEECCTTSSSCSS-S
T ss_pred             CCeEEEEeCCc---CCcccHHHHHHHHHHCCCEEEEECcccccCccC-----CEecc--cccceEEEeccCCcccCCC-C
Confidence            57788876643   4454445555555554        555443211     11222  3346554  4  9999987 7


Q ss_pred             ccccee-cHHHHHhhhc---CCcc-----------cc----------cCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy6205         159 VAAVIT-TKEIAKSFQE---TGVE-----------YF----------NTYGGNPVSCAVANAVMEVLETENLREHALDVG  213 (224)
Q Consensus       159 ~~av~~-~~~i~~~~~~---~~~~-----------~~----------~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g  213 (224)
                      .|++++ ++++.+.+..   .+..           +.          .++..+++.++.++..++.++  .+.++.+++.
T Consensus       199 ~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~--~~~~~~~~~~  276 (418)
T 2c81_A          199 GGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELD--DKNAIREKNA  276 (418)
T ss_dssp             CEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHH--HHHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            888888 4787766542   1100           11          122256776666666665553  4677888888


Q ss_pred             HHHHHhhhhc
Q psy6205         214 NQLHTPKKEN  223 (224)
Q Consensus       214 ~~l~~~l~~l  223 (224)
                      ++|.+.|+++
T Consensus       277 ~~l~~~L~~~  286 (418)
T 2c81_A          277 MFLNDALSKI  286 (418)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHhccC
Confidence            8998888764

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=95.69  E-value=0.039  Score=47.98  Aligned_cols=116  Identities=12%  Similarity=0.037  Sum_probs=73.7

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHH--H--------HHh-CCccccccchhhhhcCCCCCCchh--cccccccC-C
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYK--H--------VQV-GFGRVGTHWWAFQLQGDDIIPDIV--TVGKPMGN-G  156 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~--~--------v~t-G~GrtG~~~~~~~~~g~~v~pDi~--~~~K~l~~-G  156 (224)
                      +..+|++|......|.+.+.++..+.+++  .        ++. +++  .      ....  .-.|++  +++|.+++ |
T Consensus       167 ~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~--~------~p~~--~g~Div~~S~sK~lg~~g  236 (415)
T 2fq6_A          167 NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL--F------KALD--FGIDVSIQAATKYLVGHS  236 (415)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS--S------CGGG--GTCSEEEEETTTTTTCSS
T ss_pred             CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCccccc--C------Cccc--cCCeEEEEeCccccCCCC
Confidence            57899999988889999988888888888  5        322 110  1      1111  236887  58999986 3


Q ss_pred             -cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHH
Q psy6205         157 -HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHT  218 (224)
Q Consensus       157 -~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~  218 (224)
                       ...|++++++++.+.+.... .. .....+|..++.++..++.+..  +...++++.+.++|.+
T Consensus       237 ~~~~G~l~~~~~~~~~l~~~~-~~-~G~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~  299 (415)
T 2fq6_A          237 DAMIGTAVCNARCWEQLRENA-YL-MGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAE  299 (415)
T ss_dssp             SCCCEEEEECTTTHHHHHHHH-HH-TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CceEEEEEeCHHHHHHHHHHH-Hh-cCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence             45688889988877665321 11 1223467877777777776632  2344455555555543

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=95.69  E-value=0.052  Score=47.49  Aligned_cols=138  Identities=11%  Similarity=0.020  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEcc----ccCCCCcccCCHHHHHHHHH--H-----HHhCCccccccchhhhhcCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAES----LQSCGGQIIPPANYLREVYK--H-----VQVGFGRVGTHWWAFQLQGDDII  143 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Ep----v~~~~G~~~~~~~~l~~~~~--~-----v~tG~GrtG~~~~~~~~~g~~v~  143 (224)
                      +++|++.++    ..++..+|++|+    ..+..|.+.+-+++.+.+++  .     |-.-++ ++.  +..+...  ..
T Consensus       164 ~e~l~~~l~----~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~-~~~--~~~~p~~--~g  234 (427)
T 3i16_A          164 LEEIEKVLK----EDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYG-EFM--DTKEPTD--VG  234 (427)
T ss_dssp             HHHHHHHHH----TCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTT-TTS--SSSCGGG--GT
T ss_pred             HHHHHHHhh----CCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCc-ccc--ccCCccc--cC
Confidence            455665554    124678999999    66667777776677776766  3     100010 110  0011111  22


Q ss_pred             Cchh--cccccccCC-cc-cccceecHHHHHhhhc--CCcccccCCCCcHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy6205         144 PDIV--TVGKPMGNG-HP-VAAVITTKEIAKSFQE--TGVEYFNTYGGNPVS-CAVANAVMEVLETENLREHALDVGNQL  216 (224)
Q Consensus       144 pDi~--~~~K~l~~G-~p-~~av~~~~~i~~~~~~--~~~~~~~T~~~~p~~-~aaa~a~l~~~~~~~l~~~~~~~g~~l  216 (224)
                      .|++  +++|.+|++ -| .|++++++++.+.+..  ....++.+ .+.... +..++..|+.+  +...++..+...++
T Consensus       235 aDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~-~~~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~l  311 (427)
T 3i16_A          235 ADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGE-CGSTFGVVRSMYQGLFLA--PHISMEALKGAILC  311 (427)
T ss_dssp             CSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGG-CCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred             CeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCcc-CCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            5766  589999875 34 5778889999998865  21111111 111122 33333333333  45667777777888


Q ss_pred             HHhhhhcC
Q psy6205         217 HTPKKENN  224 (224)
Q Consensus       217 ~~~l~~l~  224 (224)
                      .+.|++++
T Consensus       312 a~~L~~~g  319 (427)
T 3i16_A          312 SRIMELAG  319 (427)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHhCC
Confidence            88877653

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=95.69  E-value=0.022  Score=49.83  Aligned_cols=125  Identities=12%  Similarity=0.024  Sum_probs=66.3

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCccccccchhhhhcCCCCCCchhcccccccC-Ccccccce
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGN-GHPVAAVI  163 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~-G~p~~av~  163 (224)
                      .++.+|++|......|.+.+.++..+.+++.     |-.-++ +|. ++....+|  ....+.+++|.++| |..+++++
T Consensus       166 ~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~-~~~-~~~~~~~g--~div~~S~sK~l~g~g~~~gG~v  241 (430)
T 3ri6_A          166 ETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMT-PPY-LLEAKRLG--VDIEVLSSTKFISGGGTSVGGVL  241 (430)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTS-CTT-TCCGGGGT--CSEEEEECCCEEETTEEECCEEE
T ss_pred             CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc-ccc-cCChHHcC--CEEEEECCcccccCCCCceEEEE
Confidence            3678999999999889888755555555544     111121 332 22333455  43334467899987 45555555


Q ss_pred             e--cH-HH------------------HHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         164 T--TK-EI------------------AKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       164 ~--~~-~i------------------~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      .  .+ ..                  .+...... ........+|..+..++..++.+..  ..++..++.+++.+.|+
T Consensus       242 v~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~-~~~~g~~~~~~~a~l~l~~l~~l~~--r~~~~~~na~~la~~L~  317 (430)
T 3ri6_A          242 IDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEV-FQNLGPSLSPHNAYLQSLGLETMAL--RIERSCQNAQELAHWLL  317 (430)
T ss_dssp             EECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTH-HHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHT
T ss_pred             EECChHHhhhccchhhhhhhhchhhHHHHHHHHH-HHhcCCCCCHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHh
Confidence            4  21 11                  11111110 0112233578888888888887743  23334444455555444

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=95.65  E-value=0.0025  Score=60.59  Aligned_cols=80  Identities=11%  Similarity=0.011  Sum_probs=41.4

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLI   82 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~   82 (224)
                      +||.|++|||.|+|+++|++.+..+..+....+..+.......+++..|..+..|...+...  +++..++.++.|++.+
T Consensus       748 ~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~g~~lrl~pp~~~--t~e~id~~~~~l~~~l  825 (831)
T 4a0g_A          748 SHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCT--SPEICRRLLTKLYKRL  825 (831)
T ss_dssp             HSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCBTTEEEEECCTTC--CHHHHHHHHHHHHHHH
T ss_pred             hCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEecCCEEEEECCCCC--CHHHHHHHHHHHHHHH
Confidence            47899999999999999998764322222222333333333334444444444442211111  2666667777777666


Q ss_pred             HH
Q psy6205          83 EA   84 (224)
Q Consensus        83 ~~   84 (224)
                      +.
T Consensus       826 ~~  827 (831)
T 4a0g_A          826 GE  827 (831)
T ss_dssp             TT
T ss_pred             HH
Confidence            53

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=95.50  E-value=0.12  Score=45.28  Aligned_cols=139  Identities=9%  Similarity=-0.066  Sum_probs=78.6

Q ss_pred             HHHHHHHH-HHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-----HH---hCCccccccchhhhhcCCCCCCc
Q psy6205          75 AQDVQDLI-EAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQ---VGFGRVGTHWWAFQLQGDDIIPD  145 (224)
Q Consensus        75 ~~~l~~~~-~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~---tG~GrtG~~~~~~~~~g~~v~pD  145 (224)
                      +++|++.+ +..  ...++.+|++.-.....|.+.+-++..+.+++.     |-   .++ -.|..-...+.+.  ..+|
T Consensus       216 ~~~l~~~i~~~~--~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~-~~g~~~~~~~~~~--~~~D  290 (456)
T 2z67_A          216 VEDIENAIKKEI--ELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQ-NNYYLEKLKKAFK--YRVD  290 (456)
T ss_dssp             HHHHHHHHHHHH--HTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTT-CHHHHHHHHHHHT--SCCS
T ss_pred             HHHHHHHHHHHh--hCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHH-HHHhhHHHHHhhC--CCCC
Confidence            45666666 311  123555565444334568888877777777776     11   111 1111000111121  1588


Q ss_pred             hhcc--cccccCCccccccee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHh
Q psy6205         146 IVTV--GKPMGNGHPVAAVIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHTP  219 (224)
Q Consensus       146 i~~~--~K~l~~G~p~~av~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~~  219 (224)
                      ++++  .|.++++..+|++++ ++++.+.+...   +..+..++|  ..+..+++..+.+   +++.++..++.++|.++
T Consensus       291 ~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~---~~g~~~~~~--~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~  365 (456)
T 2z67_A          291 AVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLS---YPGRASATP--VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDEL  365 (456)
T ss_dssp             EEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTT---SCSCBCSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcC---CCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8765  897766677888999 57787776432   222333444  3344455555533   35677888999999999


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |+++
T Consensus       366 L~~~  369 (456)
T 2z67_A          366 LNDL  369 (456)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8764

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=95.39  E-value=0.29  Score=43.53  Aligned_cols=146  Identities=19%  Similarity=0.124  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCC-CCc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDI-IPD  145 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v-~pD  145 (224)
                      .++|++.++.-...+..+.+|++.-.....|.+.+.++..+.+++.        ++.|.--... -+.....|  + ..|
T Consensus       232 ~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~-~~~~~~~g--~~~aD  308 (511)
T 3vp6_A          232 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSR-KHRHKLNG--IERAN  308 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCT-TTGGGGTT--GGGCS
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhCh-hhhhhccC--CccCC
Confidence            4667776654222334477888887777888888777777777776        2222100000 00111112  2 357


Q ss_pred             hhc--ccccccCCcccccceecHH-HHHhhhcCCccccc---------------CC-CCcHHHHHHHHHHHHHHhh---h
Q psy6205         146 IVT--VGKPMGNGHPVAAVITTKE-IAKSFQETGVEYFN---------------TY-GGNPVSCAVANAVMEVLET---E  203 (224)
Q Consensus       146 i~~--~~K~l~~G~p~~av~~~~~-i~~~~~~~~~~~~~---------------T~-~~~p~~~aaa~a~l~~~~~---~  203 (224)
                      +++  ..|.++..+-.|+++++++ +.+........+..               |. .+.+..+.+..++|+.+..   +
T Consensus       309 sv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~  388 (511)
T 3vp6_A          309 SVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFE  388 (511)
T ss_dssp             EEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHH
Confidence            665  5788875566677777654 44433211101110               11 1112223344445555533   4


Q ss_pred             hHHHHHHHHHHHHHHhhhhc
Q psy6205         204 NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       204 ~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++.++..++.++|.+.|+++
T Consensus       389 ~~~~~~~~~a~~l~~~L~~~  408 (511)
T 3vp6_A          389 NQINKCLELAEYLYAKIKNR  408 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            67788889999999998764

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=95.10  E-value=0.054  Score=44.98  Aligned_cols=125  Identities=10%  Similarity=0.056  Sum_probs=76.9

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHHHHhCCccc-cccchhhh---hcC---CCCC-Cchhc--ccccccCCccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKHVQVGFGRV-GTHWWAFQ---LQG---DDII-PDIVT--VGKPMGNGHPV  159 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~v~tG~Grt-G~~~~~~~---~~g---~~v~-pDi~~--~~K~l~~G~p~  159 (224)
                      +++.+|+++......|.+.+    ++++.++..    +. |. +...+   .++   .++. .|+++  ++|.+++...+
T Consensus       129 ~~~~~v~~~~~~nptG~~~~----l~~i~~la~----~~p~~-~li~D~a~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~  199 (362)
T 3ffr_A          129 ADAEIICLTHNETSSGVSMP----VEDINTFRD----KNKDA-LIFVDAVSSLPYPKFDWTKIDSVFFSVQKCFGLPAGL  199 (362)
T ss_dssp             TTCCEEEEESEETTTTEECC----HHHHTTSGG----GSTTS-EEEEECTTTTTSSCCCTTSCSEEEEETTSTTCCCSCC
T ss_pred             CCccEEEEEcCCCCcceeCC----HHHHHHHHH----hCCCC-EEEEecccccCCcccChhHCcEEEEecccccCCCCce
Confidence            46778888888878888776    333433311    12 21 11100   011   0122 67775  45999854446


Q ss_pred             ccceecHHHHHhhhcCC-----cc--------------cccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHH
Q psy6205         160 AAVITTKEIAKSFQETG-----VE--------------YFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLH  217 (224)
Q Consensus       160 ~av~~~~~i~~~~~~~~-----~~--------------~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~  217 (224)
                      +.+++++++.+.+....     ..              ....++.++.+.++..++++.+.+   +.+.++.+++.+++.
T Consensus       200 g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~  279 (362)
T 3ffr_A          200 GVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALIN  279 (362)
T ss_dssp             EEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            77889999887665310     00              011455677788888888988754   467778888999999


Q ss_pred             Hhhhhc
Q psy6205         218 TPKKEN  223 (224)
Q Consensus       218 ~~l~~l  223 (224)
                      +.|+++
T Consensus       280 ~~L~~~  285 (362)
T 3ffr_A          280 TYIESS  285 (362)
T ss_dssp             HHHHHC
T ss_pred             HHHHHc
Confidence            998875

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=94.69  E-value=0.05  Score=45.56  Aligned_cols=78  Identities=14%  Similarity=0.162  Sum_probs=55.6

Q ss_pred             chh--cccccccC-CcccccceecHHHHHhhhcCCc-cc---------ccCCCCcHHHHHHHHHHHHHHhh----hhHHH
Q psy6205         145 DIV--TVGKPMGN-GHPVAAVITTKEIAKSFQETGV-EY---------FNTYGGNPVSCAVANAVMEVLET----ENLRE  207 (224)
Q Consensus       145 Di~--~~~K~l~~-G~p~~av~~~~~i~~~~~~~~~-~~---------~~T~~~~p~~~aaa~a~l~~~~~----~~l~~  207 (224)
                      |++  +++|.+|. |  +|.+++++++.+.+..... .+         ...++-++.+.+++.++|+.+++    +...+
T Consensus       189 d~~~~s~~K~~g~~G--~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~  266 (362)
T 2c0r_A          189 GLVYAGAQKNLGPSG--VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQ  266 (362)
T ss_dssp             SEEEEETTTTTCCSS--CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             cEEEEeccccccCcC--cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            655  57999972 4  6788999888766643100 00         12356678888999999998765    56778


Q ss_pred             HHHHHHHHHHHhhhhcC
Q psy6205         208 HALDVGNQLHTPKKENN  224 (224)
Q Consensus       208 ~~~~~g~~l~~~l~~l~  224 (224)
                      +.+++.++|.+.|++++
T Consensus       267 ~~~~~~~~l~~~L~~~~  283 (362)
T 2c0r_A          267 ANRKKASLIYDAIDQSG  283 (362)
T ss_dssp             HHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            88899999999998763

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=94.60  E-value=0.19  Score=44.53  Aligned_cols=73  Identities=11%  Similarity=-0.009  Sum_probs=50.5

Q ss_pred             cccccc-c-CCcccccce---ecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHH-----------HHh-hhhHHHHHH
Q psy6205         148 TVGKPM-G-NGHPVAAVI---TTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVME-----------VLE-TENLREHAL  210 (224)
Q Consensus       148 ~~~K~l-~-~G~p~~av~---~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~-----------~~~-~~~l~~~~~  210 (224)
                      ++||.+ | .|+.+|.++   .++++.+.+...   ...+...++++.+++.+.++           .++ .+.+.++++
T Consensus       313 S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~  389 (498)
T 3ihj_A          313 STSKGYMGECGYRGGYMEVINLHPEIKGQLVKL---LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLA  389 (498)
T ss_dssp             ESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHH---HHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCcccceEEEEEecCCHHHHHHHHHH---HhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHH
Confidence            689999 4 688899988   689999887643   12334456666666665552           232 246677888


Q ss_pred             HHHHHHHHhhhhc
Q psy6205         211 DVGNQLHTPKKEN  223 (224)
Q Consensus       211 ~~g~~l~~~l~~l  223 (224)
                      +..+++.+.|+++
T Consensus       390 ~~~~~l~~~L~~~  402 (498)
T 3ihj_A          390 KKAKLTEDLFNQV  402 (498)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhcC
Confidence            8888888888764

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=94.43  E-value=0.023  Score=50.16  Aligned_cols=81  Identities=12%  Similarity=0.085  Sum_probs=45.2

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCcccc----chhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSE----AQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQD   77 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~----a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~   77 (224)
                      .++|.|+++||.|+|.+++++.+..++.++...    +..+.......++...+..++.|...+...  +++..++.++.
T Consensus       367 ~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~iRi~p~~~~--t~e~i~~~l~~  444 (472)
T 3hmu_A          367 TDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVI--TPAEIDEMFVR  444 (472)
T ss_dssp             GGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEETTEEEECCCTTC--CHHHHHHHHHH
T ss_pred             hcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecCCEEEEECCCCC--CHHHHHHHHHH
Confidence            347889999999999999998765555554211    222222222233333333344443322111  25666666777


Q ss_pred             HHHHHHH
Q psy6205          78 VQDLIEA   84 (224)
Q Consensus        78 l~~~~~~   84 (224)
                      |++.++.
T Consensus       445 l~~~l~~  451 (472)
T 3hmu_A          445 IRKSLDE  451 (472)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666654

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=94.25  E-value=0.15  Score=43.27  Aligned_cols=80  Identities=11%  Similarity=0.038  Sum_probs=54.3

Q ss_pred             Cchhcc--cccccCCcccccceecHHHHHhhhcC--------C-cc---------cccC-CCCcHHHHHHHHHHHHHHhh
Q psy6205         144 PDIVTV--GKPMGNGHPVAAVITTKEIAKSFQET--------G-VE---------YFNT-YGGNPVSCAVANAVMEVLET  202 (224)
Q Consensus       144 pDi~~~--~K~l~~G~p~~av~~~~~i~~~~~~~--------~-~~---------~~~T-~~~~p~~~aaa~a~l~~~~~  202 (224)
                      +|++++  +|.++.+--+|++++++++.+.+...        . ..         ...+ ++-|..+++++.++|+.+.+
T Consensus       213 ~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~  292 (398)
T 2fyf_A          213 TDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVG  292 (398)
T ss_dssp             CSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            687765  49998642278899999998766310        0 00         0123 34566677788889988754


Q ss_pred             ----hhHHHHHHHHHHHHHHhhhhc
Q psy6205         203 ----ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       203 ----~~l~~~~~~~g~~l~~~l~~l  223 (224)
                          +.+.++.+++.+++.+.|+++
T Consensus       293 ~g~~~~~~~~~~~~~~~l~~~L~~~  317 (398)
T 2fyf_A          293 NGGLDWAVKRTADSSQRLYSWAQER  317 (398)
T ss_dssp             HTSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHc
Confidence                346778888999999998865

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=94.07  E-value=0.14  Score=42.52  Aligned_cols=78  Identities=15%  Similarity=0.185  Sum_probs=53.0

Q ss_pred             chhc--ccccccCCcccccceecHHHHHhhhcCCcc---------cccCC-CCcHHHHHHHHHHHHHHhh----hhHHHH
Q psy6205         145 DIVT--VGKPMGNGHPVAAVITTKEIAKSFQETGVE---------YFNTY-GGNPVSCAVANAVMEVLET----ENLREH  208 (224)
Q Consensus       145 Di~~--~~K~l~~G~p~~av~~~~~i~~~~~~~~~~---------~~~T~-~~~p~~~aaa~a~l~~~~~----~~l~~~  208 (224)
                      |+++  ++|.+|. ..+|.+++++++.+.+......         ..+++ +.++.+++++.++|+.+++    +.+.++
T Consensus       188 di~~~s~sK~~~~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  266 (360)
T 1w23_A          188 GMIYAGAQKNLGP-SGVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQ  266 (360)
T ss_dssp             SEEEEETTTTTSC-TTCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             CEEEEEcccccCC-CCcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            7775  4599973 1378899999988766432100         11222 3456677788888988754    357788


Q ss_pred             HHHHHHHHHHhhhhc
Q psy6205         209 ALDVGNQLHTPKKEN  223 (224)
Q Consensus       209 ~~~~g~~l~~~l~~l  223 (224)
                      .+++.+++.+.|+++
T Consensus       267 ~~~~~~~l~~~L~~~  281 (360)
T 1w23_A          267 NEEKAKIIYDTIDES  281 (360)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHc
Confidence            888999999988765

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=94.03  E-value=0.036  Score=48.97  Aligned_cols=82  Identities=12%  Similarity=0.009  Sum_probs=45.0

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccc---cchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATS---EAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~---~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      .++|.++++||.|+|.+++++.+..+..++..   .+..+.......++...+..+..|...+...  +++..++.++.|
T Consensus       370 ~~~~~v~~v~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~iRi~p~l~~--t~e~i~~~l~~l  447 (476)
T 3i5t_A          370 RDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLGDLCVISPPLII--SRAQIDEMVAIM  447 (476)
T ss_dssp             TTSTTEEEEEEETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEETTEEEECCCTTC--CHHHHHHHHHHH
T ss_pred             hcCCCeEEEEecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEecCCEEEEECCCCC--CHHHHHHHHHHH
Confidence            45789999999999999999876665555321   1222222222234444444344443322111  266677777777


Q ss_pred             HHHHHHH
Q psy6205          79 QDLIEAM   85 (224)
Q Consensus        79 ~~~~~~~   85 (224)
                      ++.++.+
T Consensus       448 ~~~l~~~  454 (476)
T 3i5t_A          448 RQAITEV  454 (476)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777654

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=93.85  E-value=0.24  Score=43.64  Aligned_cols=78  Identities=10%  Similarity=0.087  Sum_probs=46.6

Q ss_pred             Cchhcc--cccccCCcccccceecHH---------------HHHhhhcCCccccc-CCCCcHHHHHHHHHHHHHHhh---
Q psy6205         144 PDIVTV--GKPMGNGHPVAAVITTKE---------------IAKSFQETGVEYFN-TYGGNPVSCAVANAVMEVLET---  202 (224)
Q Consensus       144 pDi~~~--~K~l~~G~p~~av~~~~~---------------i~~~~~~~~~~~~~-T~~~~p~~~aaa~a~l~~~~~---  202 (224)
                      .|++++  +|.|+| ...|.++++++               +.+.+...  .+.. +.+.+...+++..++++.+.+   
T Consensus       247 ~div~~s~~K~l~G-prgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~--~~~~~~g~~~~~~iaal~~Al~~~~~~~~  323 (483)
T 1rv3_A          247 CHVVTTTTHKTLRG-CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSA--VFPGLQGGPHNHAIAGVAVALKQAMTPEF  323 (483)
T ss_dssp             CSEEEEESSGGGCC-CSCEEEEEECSBCC-------CCBCCHHHHHHHH--HTTTTCCSCCHHHHHHHHHHHHHHTSHHH
T ss_pred             CcEEEecCcccCCC-CCceEEEEcchhhhhccccCcchhhHHHHHhhhh--cCCcccCCccHHHHHHHHHHHHHHhChhH
Confidence            587764  599954 34477888764               33333211  1111 112234455555667777753   


Q ss_pred             hhHHHHHHHHHHHHHHhhhhcC
Q psy6205         203 ENLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       203 ~~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      +.+.+++.++.++|.+.|+++|
T Consensus       324 ~~~~~~~~~~~~~l~~~L~~~g  345 (483)
T 1rv3_A          324 KEYQRQVVANCRALSAALVELG  345 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            4677888899999999988653

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=93.18  E-value=1.4  Score=38.70  Aligned_cols=145  Identities=13%  Similarity=0.038  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCC-CCc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDI-IPD  145 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v-~pD  145 (224)
                      .++|++.++.-...+....+|++.-.....|.+.+-++..+.+++.        .+.|+--.+. .+.....|  + ..|
T Consensus       225 ~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~-~~~~~~~g--i~~aD  301 (481)
T 4e1o_A          225 GEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCP-EFRGFLKG--IEYAD  301 (481)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSG-GGGGGGTT--GGGCS
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhCh-hhHHHhcC--cccCC
Confidence            4567766654222222344455554455678887877777777776        2222111111 01111123  3 357


Q ss_pred             hhcc--cccccCCcccccceecHHH-H-HhhhcCCcccc-----------------cCCCCcHHHHHHHHHHHHHHhhhh
Q psy6205         146 IVTV--GKPMGNGHPVAAVITTKEI-A-KSFQETGVEYF-----------------NTYGGNPVSCAVANAVMEVLETEN  204 (224)
Q Consensus       146 i~~~--~K~l~~G~p~~av~~~~~i-~-~~~~~~~~~~~-----------------~T~~~~p~~~aaa~a~l~~~~~~~  204 (224)
                      .+++  .|.++.-+..|+++++++- . +.+.... .+.                 .+.....+.+.+++..+..---++
T Consensus       302 si~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~-~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~  380 (481)
T 4e1o_A          302 SFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNP-IYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQA  380 (481)
T ss_dssp             EEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCC-GGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCc-hhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHH
Confidence            7765  7888765566677776542 2 2221110 111                 111123444444444332211245


Q ss_pred             HHHHHHHHHHHHHHhhhhc
Q psy6205         205 LREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       205 l~~~~~~~g~~l~~~l~~l  223 (224)
                      +.++..++.++|.+.|+++
T Consensus       381 ~~~~~~~~a~~l~~~L~~~  399 (481)
T 4e1o_A          381 HVRHGTEMAKYFESLVRND  399 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            6778889999999999865

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=92.97  E-value=0.079  Score=46.26  Aligned_cols=82  Identities=15%  Similarity=0.120  Sum_probs=47.4

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCcccc---chhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSE---AQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~---a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      .++|.++++|+.|+|.+++++.+..++.++...   +..+.......++...+..++.|...+...  +++..++.++.|
T Consensus       365 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~iRi~~~~~~--t~e~i~~~l~~l  442 (459)
T 4a6r_A          365 SRFEHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGDHIVSAPPLVM--TRAEVDEMLAVA  442 (459)
T ss_dssp             TTCTTEEEEEEETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEETTEEEECCCTTC--CHHHHHHHHHHH
T ss_pred             hcCCCeEEEEEEEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCCCEEEEECCCCC--CHHHHHHHHHHH
Confidence            457889999999999999998776665554211   222222222234444443344443322111  256667777777


Q ss_pred             HHHHHHH
Q psy6205          79 QDLIEAM   85 (224)
Q Consensus        79 ~~~~~~~   85 (224)
                      ++.++.+
T Consensus       443 ~~~l~~~  449 (459)
T 4a6r_A          443 ERCLEEF  449 (459)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776653

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=92.88  E-value=0.052  Score=47.93  Aligned_cols=77  Identities=13%  Similarity=0.078  Sum_probs=42.2

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCC-CCcc----ccchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQK-TPAT----SEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQD   77 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~-~p~~----~~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~   77 (224)
                      +||.+.+|||.|+|+|+||+....+. .+..    .....+...+...+++..|..+++. +...    +++..++.++.
T Consensus       364 ~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~~~~~-s~~~----T~~dId~~l~a  438 (454)
T 4ao9_A          364 NEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRGFVVL-SLPL----TDADIDRYVAA  438 (454)
T ss_dssp             HHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTCEEEC-CTTC----CHHHHHHHHHH
T ss_pred             hCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCCCEEE-eCCC----CHHHHHHHHHH
Confidence            47889999999999999997643221 1111    1111222222223444333332221 1111    26677888888


Q ss_pred             HHHHHHH
Q psy6205          78 VQDLIEA   84 (224)
Q Consensus        78 l~~~~~~   84 (224)
                      +++.+..
T Consensus       439 l~~~l~~  445 (454)
T 4ao9_A          439 IGSFIGG  445 (454)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8888875

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=92.61  E-value=0.12  Score=44.98  Aligned_cols=82  Identities=21%  Similarity=0.274  Sum_probs=48.9

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccccc---hhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEA---QHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a---~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      ..+|.+.++|+.|+|.++++..+..+..++....   ..+.......++...|..++.|...+...  +++..++.++.|
T Consensus       359 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~iRi~~~~~~--t~e~i~~~l~~l  436 (448)
T 3dod_A          359 HALPHVGDIRQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPPLAS--TAEELSEMVAIM  436 (448)
T ss_dssp             TTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEETTEEEECCCTTC--CHHHHHHHHHHH
T ss_pred             hcCCCeEEEEeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEeccCCEEEEECCCCC--CHHHHHHHHHHH
Confidence            3578899999999999999987766655543221   22222222234444444444554222111  256677778888


Q ss_pred             HHHHHHH
Q psy6205          79 QDLIEAM   85 (224)
Q Consensus        79 ~~~~~~~   85 (224)
                      ++.++.+
T Consensus       437 ~~~l~~~  443 (448)
T 3dod_A          437 KQAIHEV  443 (448)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777654

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=91.63  E-value=1.4  Score=38.53  Aligned_cols=146  Identities=12%  Similarity=-0.010  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCC-CCc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDI-IPD  145 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v-~pD  145 (224)
                      .++|++.++.-...+....+|++.-.....|.+.+-++..+.+++.        .+.|.-.... .+.....|  + ..|
T Consensus       218 ~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~-~~~~~~~g--i~~~D  294 (475)
T 3k40_A          218 GAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICP-EYRHLMKG--IESAD  294 (475)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSG-GGGGGGTT--GGGCS
T ss_pred             HHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCH-hhHHHhcC--cccCC
Confidence            4667766654211222234444443344567787777777777776        2222101111 01111112  3 358


Q ss_pred             hhcc--cccccCCcccccceecHH-H-HHhhhcCCcccc------------cCC-CCcHHHHHHHHHHHHHHhh---hhH
Q psy6205         146 IVTV--GKPMGNGHPVAAVITTKE-I-AKSFQETGVEYF------------NTY-GGNPVSCAVANAVMEVLET---ENL  205 (224)
Q Consensus       146 i~~~--~K~l~~G~p~~av~~~~~-i-~~~~~~~~~~~~------------~T~-~~~p~~~aaa~a~l~~~~~---~~l  205 (224)
                      .+++  .|.+++-+..|+++++++ . .+.+........            .|. .+-+.......++|+.+..   +++
T Consensus       295 s~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~  374 (475)
T 3k40_A          295 SFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAH  374 (475)
T ss_dssp             EEEECHHHHSSCCSSCEEEEESSGGGC---------------------------CCCGGGTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHH
Confidence            7765  688776566677777654 2 122211000000            011 1212223344455555533   467


Q ss_pred             HHHHHHHHHHHHHhhhhc
Q psy6205         206 REHALDVGNQLHTPKKEN  223 (224)
Q Consensus       206 ~~~~~~~g~~l~~~l~~l  223 (224)
                      .++..++.++|.++|+++
T Consensus       375 ~~~~~~~a~~l~~~L~~~  392 (475)
T 3k40_A          375 IRRHCNFAKQFGDLCVAD  392 (475)
T ss_dssp             HHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            788889999999999865

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=91.41  E-value=0.18  Score=43.07  Aligned_cols=74  Identities=26%  Similarity=0.263  Sum_probs=52.3

Q ss_pred             ccccccc-CCccccccee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh---------h---hhHHHHHHHHH
Q psy6205         148 TVGKPMG-NGHPVAAVIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE---------T---ENLREHALDVG  213 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~---------~---~~l~~~~~~~g  213 (224)
                      +++|.+| .|+-+|.+++ ++++.+.+...  ....+++.++++..++.+.|+.-.         +   +.+.+++++.-
T Consensus       214 S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~--~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (391)
T 3bwn_A          214 TFSKITGHAGSRIGWALVKDKEVAKKMVEY--IIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRW  291 (391)
T ss_dssp             EHHHHHSCGGGCEEEEEECCHHHHHHHHHH--HHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHH
T ss_pred             echhhcCCCccceEEEEecCHHHHHHHHHH--hcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHH
Confidence            6899997 6888899987 88998887642  122346678888888888887532         1   23556667777


Q ss_pred             HHHHHhhhhc
Q psy6205         214 NQLHTPKKEN  223 (224)
Q Consensus       214 ~~l~~~l~~l  223 (224)
                      +++.+.|+++
T Consensus       292 ~~l~~~L~~~  301 (391)
T 3bwn_A          292 EKLREVVKES  301 (391)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            7787777754

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=91.34  E-value=0.2  Score=43.64  Aligned_cols=82  Identities=17%  Similarity=0.211  Sum_probs=47.6

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCcccc---chhhhccCCCcceeecCCC--ccccCCCCCCCCCChhHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSE---AQHVITRPPVRMSTEAPCP--DVYRGKYPADKYPDEDLGVKYAQ   76 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~---a~~l~~~~~~~~~~~vp~P--~~yr~~~~~~~~~~~~~~~~~~~   76 (224)
                      .++|.++++|+.|+|.+++++.+..+..++...   +..+.......++...+..  ++.|...+...  +++..++.++
T Consensus       370 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~--t~e~i~~~l~  447 (460)
T 3gju_A          370 GGHKNVGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCL--TREQADIVVS  447 (460)
T ss_dssp             TTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSSSCEEEECCCTTC--CHHHHHHHHH
T ss_pred             hcCCCeEEEeeeeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCC--CHHHHHHHHH
Confidence            457889999999999999998776655544211   1122222222334443432  44443322111  2566777788


Q ss_pred             HHHHHHHHH
Q psy6205          77 DVQDLIEAM   85 (224)
Q Consensus        77 ~l~~~~~~~   85 (224)
                      .|++.++.+
T Consensus       448 ~l~~~l~~~  456 (460)
T 3gju_A          448 KTADAVKSV  456 (460)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888777654

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=91.14  E-value=0.27  Score=43.79  Aligned_cols=78  Identities=15%  Similarity=0.159  Sum_probs=46.6

Q ss_pred             Cchh--cccccccCCcccccceecHH---------------HHHhhhcCCcccccCCCC-cHHHHHHHHHHHHHHhh---
Q psy6205         144 PDIV--TVGKPMGNGHPVAAVITTKE---------------IAKSFQETGVEYFNTYGG-NPVSCAVANAVMEVLET---  202 (224)
Q Consensus       144 pDi~--~~~K~l~~G~p~~av~~~~~---------------i~~~~~~~~~~~~~T~~~-~p~~~aaa~a~l~~~~~---  202 (224)
                      .|++  +++|+|+| ..-|+++++++               +.+.+...  .+..+.++ ++..+++..++++.+.+   
T Consensus       257 aDiv~~S~hK~l~G-p~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~g~qggp~~~~iaAla~Al~~~~~~~~  333 (490)
T 2a7v_A          257 ADIVTTTTHKTLRG-ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFA--VFPSLQGGPHNHAIAAVAVALKQACTPMF  333 (490)
T ss_dssp             CSEEEEESSGGGCS-CSCEEEEEECSEEEEETTTEEEEECCCHHHHHHH--HTTTTCCSCCHHHHHHHHHHHHHHHSHHH
T ss_pred             CCEEEECCcccCcc-ccchheeeccchhcccccccchhhHHHHHHHHHH--hcccCCCCchHHHHHHHHHHHHHHhhhhH
Confidence            4766  57899964 23355777654               33333321  22233333 34445555556666532   


Q ss_pred             hhHHHHHHHHHHHHHHhhhhcC
Q psy6205         203 ENLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       203 ~~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      +.+.+++.++.++|.+.|+++|
T Consensus       334 ~~~~~~~~~na~~L~~~L~~~G  355 (490)
T 2a7v_A          334 REYSLQVLKNARAMADALLERG  355 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC
Confidence            4677888999999999998764

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=90.85  E-value=1.3  Score=38.02  Aligned_cols=124  Identities=13%  Similarity=0.136  Sum_probs=68.4

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH----H--Hh--CCccccccchhhhhcCCCCCCchhcc-ccccc-----CC
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH----V--QV--GFGRVGTHWWAFQLQGDDIIPDIVTV-GKPMG-----NG  156 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----v--~t--G~GrtG~~~~~~~~~g~~v~pDi~~~-~K~l~-----~G  156 (224)
                      ++.+|++.-. ...|.+.+-++..+.+++.    +  ..  .+|...    ....++    +|++++ +|.+|     +|
T Consensus       196 ~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~----~~~~~g----~D~~~~s~kk~~~~~~~~G  266 (438)
T 1wyu_A          196 EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLK----PPGAYG----ADIAVGDGQSLGLPMGFGG  266 (438)
T ss_dssp             TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBC----CHHHHT----CSEEEEECTTTTCCCGGGC
T ss_pred             CeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcC----CCccCC----CCEEEECCcccCCCccCCC
Confidence            4667777764 6788888766666666665    1  11  122111    112233    788887 47543     22


Q ss_pred             cccccceecHHHHHhhhcCC----------cc--------------cccCCCC---cHHHHHHHHHHHHHHhh---hhHH
Q psy6205         157 HPVAAVITTKEIAKSFQETG----------VE--------------YFNTYGG---NPVSCAVANAVMEVLET---ENLR  206 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~~----------~~--------------~~~T~~~---~p~~~aaa~a~l~~~~~---~~l~  206 (224)
                      .-+|.+++++++.+.+...-          ..              ...|+.-   +.++..++...++.+.+   +++.
T Consensus       267 p~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~  346 (438)
T 1wyu_A          267 PHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVA  346 (438)
T ss_dssp             SCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            24677889988877653110          00              0123322   33333222233555543   3567


Q ss_pred             HHHHHHHHHHHHhhhhc
Q psy6205         207 EHALDVGNQLHTPKKEN  223 (224)
Q Consensus       207 ~~~~~~g~~l~~~l~~l  223 (224)
                      ++.+++.+++.++|+++
T Consensus       347 ~~~~~~~~~l~~~L~~~  363 (438)
T 1wyu_A          347 LKSVEMAHKLHALLLEV  363 (438)
T ss_dssp             HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            78888999999999875

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=89.87  E-value=0.42  Score=41.37  Aligned_cols=74  Identities=11%  Similarity=0.011  Sum_probs=51.3

Q ss_pred             ccccccc-CCccccccee-cHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---------h----hHHHHHHHH
Q psy6205         148 TVGKPMG-NGHPVAAVIT-TKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET---------E----NLREHALDV  212 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~-~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---------~----~l~~~~~~~  212 (224)
                      +++|.+| .|+-+|.+++ ++++.+.+...  ....+++.++++..++.+.|+...+         +    ...+++++.
T Consensus       248 S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~--~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~  325 (427)
T 2hox_A          248 TMSKFTGHSGSRFGWALIKDESVYNNLLNY--MTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRER  325 (427)
T ss_dssp             EHHHHTSCGGGCCEEEEECCHHHHHHHHHH--HHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHH
T ss_pred             eChhcCCCCCceEEEEEECCHHHHHHHHHH--HHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHH
Confidence            6899998 6888899999 58998887643  2224556677777777777765321         1    345667777


Q ss_pred             HHHHHHhhhhc
Q psy6205         213 GNQLHTPKKEN  223 (224)
Q Consensus       213 g~~l~~~l~~l  223 (224)
                      -++|.+.|+++
T Consensus       326 ~~~l~~~L~~~  336 (427)
T 2hox_A          326 WVNITALLDQS  336 (427)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHHhC
Confidence            78888888764

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=89.80  E-value=0.74  Score=43.16  Aligned_cols=75  Identities=11%  Similarity=0.131  Sum_probs=48.1

Q ss_pred             cccccccCCcccccceecHH---H-HHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhh
Q psy6205         148 TVGKPMGNGHPVAAVITTKE---I-AKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHTPK  220 (224)
Q Consensus       148 ~~~K~l~~G~p~~av~~~~~---i-~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~~l  220 (224)
                      +++|.++|--..|.+.++++   + ...+... .....|.+-|...+++..++++.+++   +++.++..++.++++++|
T Consensus       383 S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~-~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L  461 (755)
T 2vyc_A          383 STHKLLNALSQASYIHVREGRGAINFSRFNQA-YMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAM  461 (755)
T ss_dssp             ETTTSSSCCTTCEEEEEECCBTCCCHHHHHHH-HHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccCcCCeeeeeecCcccccCHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            57999863112344555443   1 1122211 11234556778888888899998865   368899999999999999


Q ss_pred             hhc
Q psy6205         221 KEN  223 (224)
Q Consensus       221 ~~l  223 (224)
                      +++
T Consensus       462 ~~l  464 (755)
T 2vyc_A          462 ARL  464 (755)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            764

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=89.76  E-value=4.3  Score=35.27  Aligned_cols=146  Identities=10%  Similarity=-0.002  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCC-CCc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDI-IPD  145 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v-~pD  145 (224)
                      .++|++.+..-.+.+....+|++--.....|.+.+-++..+.+++.        .+.|+-.... -+.....+  + ..|
T Consensus       219 ~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~-~~~~~~~g--~~~ad  295 (486)
T 1js3_A          219 ASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICP-EFRHLLNG--VEFAD  295 (486)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGST-TTGGGGTT--GGGCS
T ss_pred             HHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCH-HHHHHhcC--ccccC
Confidence            4566666653211222233444443334567777777777777776        3222111110 00000112  2 257


Q ss_pred             hhc--ccccccCCcccccceecHH--HHHhhhcCC-cccc-----------------cCCCCcHHHHHHHHHHHHHHhhh
Q psy6205         146 IVT--VGKPMGNGHPVAAVITTKE--IAKSFQETG-VEYF-----------------NTYGGNPVSCAVANAVMEVLETE  203 (224)
Q Consensus       146 i~~--~~K~l~~G~p~~av~~~~~--i~~~~~~~~-~~~~-----------------~T~~~~p~~~aaa~a~l~~~~~~  203 (224)
                      .++  ..|.++..+.+|+++++++  +.+.+.... ....                 .+.....+++.+++..+..-.-+
T Consensus       296 si~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~  375 (486)
T 1js3_A          296 SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQ  375 (486)
T ss_dssp             EEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHH
T ss_pred             eeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHH
Confidence            766  4687765567788888654  234442110 0000                 01112334444444333211123


Q ss_pred             hHHHHHHHHHHHHHHhhhhc
Q psy6205         204 NLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       204 ~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++.++..++.++|.+.|+++
T Consensus       376 ~~~~~~~~~a~~l~~~L~~~  395 (486)
T 1js3_A          376 AYIRKHVQLSHEFEAFVLQD  395 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            46677778888898888764

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=88.95  E-value=0.34  Score=42.23  Aligned_cols=80  Identities=23%  Similarity=0.301  Sum_probs=44.9

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCC---CccccCCCCCCCCCChhHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPC---PDVYRGKYPADKYPDEDLGVKYAQDVQ   79 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~---P~~yr~~~~~~~~~~~~~~~~~~~~l~   79 (224)
                      ++|.+.++||.|+|.+++++. ..++.|.......+.......++...+.   ++..|...+...  +++..++.++.|+
T Consensus       367 ~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~--t~e~i~~~l~~l~  443 (453)
T 4ffc_A          367 EVDIIGEVRGRGAMLAIEIVK-PGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVI--GDDLLDEGITALS  443 (453)
T ss_dssp             HCSSEEEEEEETTEEEEEEBC-TTSCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTC--CHHHHHHHHHHHH
T ss_pred             hCCCeEEEEeeceEEEEEEec-CcccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCC--CHHHHHHHHHHHH
Confidence            478889999999999999976 4444443322333332222233433332   233332222111  2666777788888


Q ss_pred             HHHHHH
Q psy6205          80 DLIEAM   85 (224)
Q Consensus        80 ~~~~~~   85 (224)
                      +.++.+
T Consensus       444 ~~l~~~  449 (453)
T 4ffc_A          444 DIIRAK  449 (453)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877654

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=86.99  E-value=0.4  Score=41.49  Aligned_cols=29  Identities=52%  Similarity=0.983  Sum_probs=23.8

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCC
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTP   30 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p   30 (224)
                      .++|.+.++|+.|+|.+++++.+..+..+
T Consensus       363 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~  391 (452)
T 3n5m_A          363 GEHPLVGDIRGKGLLVGIELVNDKETKEP  391 (452)
T ss_dssp             TTCTTEEEEEESSSCEEEEEEEETTTTEE
T ss_pred             hcCCCeEEEEEEEEEEEEEEecCCcccCC
Confidence            45788999999999999999877665544

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=86.88  E-value=1.8  Score=38.86  Aligned_cols=79  Identities=13%  Similarity=-0.003  Sum_probs=44.7

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------------HHhCCccccccchhhhhcCCCCCCchhccccccc-
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMG-  154 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~-  154 (224)
                      .++.+|++...+.-.|.+.+. +.++++.++              +...|..... .......+  ....+.++||.+| 
T Consensus       244 ~~~k~v~l~~p~NPtG~~~~~-~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~-s~~~~~~~--~~i~~~S~SK~~g~  319 (546)
T 2zy4_A          244 PAIKIFFCVNPSNPPSVKMDQ-RSLERVRNIVAEHRPDLMILTDDVYGTFADDFQ-SLFAICPE--NTLLVYSFSKYFGA  319 (546)
T ss_dssp             TTEEEEEEESSCSSSCBCCCH-HHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCC-CHHHHCGG--GEEEEEESTTTTTC
T ss_pred             CCCeEEEEECCCCCCCccCCH-HHHHHHHHHHHhccCCcEEEEeCcchhhcccCc-CHHHhCCC--CEEEEEeCccccCC
Confidence            356777776555557766554 445555443              4444432221 11110001  1122457999997 


Q ss_pred             CCcccccceecHH-HHHhh
Q psy6205         155 NGHPVAAVITTKE-IAKSF  172 (224)
Q Consensus       155 ~G~p~~av~~~~~-i~~~~  172 (224)
                      .|+.+|.++++++ +++.+
T Consensus       320 ~GlRiG~~~~~~~~l~~~l  338 (546)
T 2zy4_A          320 TGWRLGVVAAHQQNVFDLA  338 (546)
T ss_dssp             GGGCEEEEEEESSCHHHHH
T ss_pred             CCcceEEEEECCHHHHHHH
Confidence            6899999999875 76665

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=86.41  E-value=1.8  Score=36.59  Aligned_cols=77  Identities=13%  Similarity=0.141  Sum_probs=49.9

Q ss_pred             Cchhccc----ccccCCccccccee-cHHHHHhhhc---CC-------cccccCCCCcHHHHHHHHHHHHHHhhhhHHHH
Q psy6205         144 PDIVTVG----KPMGNGHPVAAVIT-TKEIAKSFQE---TG-------VEYFNTYGGNPVSCAVANAVMEVLETENLREH  208 (224)
Q Consensus       144 pDi~~~~----K~l~~G~p~~av~~-~~~i~~~~~~---~~-------~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~  208 (224)
                      .|+.++|    |.+++| .-|++++ ++++.+.+..   .+       ...+..+.-+++.++.+++.|+.+++  ..++
T Consensus       180 ~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~--~~~~  256 (377)
T 3ju7_A          180 SGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDD--KLKE  256 (377)
T ss_dssp             SSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHH--HHHH
T ss_pred             CcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHH--HHHH
Confidence            5777776    999865 2344554 5666655432   11       01234567788999988888877643  5667


Q ss_pred             HHHHHHHHHHhhhhc
Q psy6205         209 ALDVGNQLHTPKKEN  223 (224)
Q Consensus       209 ~~~~g~~l~~~l~~l  223 (224)
                      .+++.+++.+.|+++
T Consensus       257 ~~~~~~~~~~~L~~~  271 (377)
T 3ju7_A          257 RTRISEWYKQLLQSN  271 (377)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCC
Confidence            777777777777654

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=85.93  E-value=2.4  Score=36.59  Aligned_cols=80  Identities=9%  Similarity=-0.131  Sum_probs=41.9

Q ss_pred             Cchhccc--ccccCCcccccceecHH-HH-HhhhcCCcccc-----cCC--CCcHHHHHHHHHHHHHHhh---hhHHHHH
Q psy6205         144 PDIVTVG--KPMGNGHPVAAVITTKE-IA-KSFQETGVEYF-----NTY--GGNPVSCAVANAVMEVLET---ENLREHA  209 (224)
Q Consensus       144 pDi~~~~--K~l~~G~p~~av~~~~~-i~-~~~~~~~~~~~-----~T~--~~~p~~~aaa~a~l~~~~~---~~l~~~~  209 (224)
                      .|+++++  |-+.+|..+|+++++++ +. +.+........     .+.  +-+.....+..++|+.+..   ++..++.
T Consensus       253 ~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~  332 (452)
T 2dgk_A          253 VKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNAS  332 (452)
T ss_dssp             EEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            5666654  85556677888999753 32 43321100000     011  1111122333344554432   3567778


Q ss_pred             HHHHHHHHHhhhhc
Q psy6205         210 LDVGNQLHTPKKEN  223 (224)
Q Consensus       210 ~~~g~~l~~~l~~l  223 (224)
                      .++.++|.+.|+++
T Consensus       333 ~~~a~~l~~~L~~~  346 (452)
T 2dgk_A          333 YQVAAYLADEIAKL  346 (452)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhC
Confidence            88899999988875

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=85.65  E-value=0.58  Score=40.63  Aligned_cols=78  Identities=22%  Similarity=0.282  Sum_probs=41.5

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCC---CccccCCCCCCCCCChhHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPC---PDVYRGKYPADKYPDEDLGVKYAQDVQ   79 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~---P~~yr~~~~~~~~~~~~~~~~~~~~l~   79 (224)
                      ++|.+.++||.|+|.+++++. ..++.|.......+.......++...+.   .++.|...+...  +++..++.++.|+
T Consensus       369 ~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~--t~e~i~~~l~~l~  445 (451)
T 3oks_A          369 EDDRIGDVRGRGAMIAMELVK-AGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSI--GDDLLNEGLDVLE  445 (451)
T ss_dssp             HCTTEEEEEEETTEEEEEEBS-TTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTC--CHHHHHHHHHHHH
T ss_pred             hCCCeEEEEEeeEEEEEEEec-CccCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCC--CHHHHHHHHHHHH
Confidence            478889999999999999976 4444443322222332222233433332   233333222111  2555666666666


Q ss_pred             HHHH
Q psy6205          80 DLIE   83 (224)
Q Consensus        80 ~~~~   83 (224)
                      +.++
T Consensus       446 ~~l~  449 (451)
T 3oks_A          446 EVLR  449 (451)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6554

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=84.47  E-value=0.71  Score=40.29  Aligned_cols=72  Identities=13%  Similarity=-0.018  Sum_probs=41.1

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLI   82 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~~   82 (224)
                      ++|.|.++|+.|+|.++++.....        +..+.......++...+..++.|...+...  +++..++.++.|++.+
T Consensus       381 ~~~~v~~vr~~G~~~~i~l~~~~~--------~~~~~~~l~~~Gv~v~~~~~~lRi~p~~~~--t~eei~~~l~~L~~~l  450 (457)
T 3tfu_A          381 ALPAVTDVRVCGAIGVIECDRPVD--------LAVATPAALDRGVWLRPFRNLVYAMPPYIC--TPAEITQITSAMVEVA  450 (457)
T ss_dssp             GSTTEEEEEECSSCEEEEESSCCC--------HHHHHHHHHHTTEECCCBTTEEEECCCTTC--CHHHHHHHHHHHHHHH
T ss_pred             cCCCeeeeecCCeEEEEEECCccc--------HHHHHHHHHHCCeEEEecCCEEEEECCCCC--CHHHHHHHHHHHHHHH
Confidence            478899999999999999854211        111222212224444444454453322111  2666777778888777


Q ss_pred             HH
Q psy6205          83 EA   84 (224)
Q Consensus        83 ~~   84 (224)
                      +.
T Consensus       451 ~~  452 (457)
T 3tfu_A          451 RL  452 (457)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=81.30  E-value=4.5  Score=35.62  Aligned_cols=81  Identities=10%  Similarity=-0.083  Sum_probs=43.0

Q ss_pred             Cchhc--ccccccCCcccccceecH-HHH-Hhhhc--CC-----cccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHH
Q psy6205         144 PDIVT--VGKPMGNGHPVAAVITTK-EIA-KSFQE--TG-----VEYFNTYGGNPVSCAVANAVMEVLET---ENLREHA  209 (224)
Q Consensus       144 pDi~~--~~K~l~~G~p~~av~~~~-~i~-~~~~~--~~-----~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~  209 (224)
                      .|.++  ..|.+.++.-+|+++.++ +.. +.+..  ..     ..+...++-+....++..++|+.+..   ....++.
T Consensus       268 ~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~  347 (502)
T 3hbx_A          268 VKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENC  347 (502)
T ss_dssp             EEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEECcccccCCCCCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45553  356665556667777753 332 22211  10     01111133333344555566666643   3567778


Q ss_pred             HHHHHHHHHhhhhcC
Q psy6205         210 LDVGNQLHTPKKENN  224 (224)
Q Consensus       210 ~~~g~~l~~~l~~l~  224 (224)
                      .++.++|.+.|++++
T Consensus       348 ~~~a~~l~~~L~~~~  362 (502)
T 3hbx_A          348 RENMIVLREGLEKTE  362 (502)
T ss_dssp             HHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhCC
Confidence            888999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	4e-23
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	2e-22
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	6e-04
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	1e-18
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	0.001
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	5e-18
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	1e-16
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	8e-07
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	3e-05
d1s0aa_	429	c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona	9e-05

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.7 bits (232), Expect = 4e-23
 Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 20/145 (13%)

Query: 77  DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVG 124
           D+  L  A+        AF  E +Q   G ++P   YL  V +             +Q G
Sbjct: 176 DLPALERALQ--DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTG 233

Query: 125 FGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYFNTY 183
             R G          +++ PDIV +GK +  G  PV+AV+   +I  + +    E+F+TY
Sbjct: 234 LARTGRWLAV---DYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG--EHFSTY 288

Query: 184 GGNPVSCAVANAVMEVLETENLREH 208
           GGNP+ C VA A +EVLE ENL E+
Sbjct: 289 GGNPLGCRVAIAALEVLEEENLAEN 313

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score = 92.2 bits (228), Expect = 2e-22
 Identities = 40/162 (24%), Positives = 59/162 (36%), Gaps = 20/162 (12%)

Query: 52  CPDVYRGKYPADKYPDEDLGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPA 111
              VYR  YP    P   +    A      I       +   A   E +Q  GG      
Sbjct: 162 PGHVYRALYP---CPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSP 218

Query: 112 NYLREVYK------------HVQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPV 159
            +++ +               VQ G GR     +A +  G  + PD+ T  K +  G P+
Sbjct: 219 AFMQRLRALCDEHGIMLIADEVQSGAGRT-GTLFAMEQMG--VAPDLTTFAKSIAGGFPL 275

Query: 160 AAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE 201
           A V    E+  +    G     TY GNP++C  A  V++V E
Sbjct: 276 AGVTGRAEVMDAVAPGG--LGGTYAGNPIACVAALEVLKVFE 315

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
             ++P IGDVRG+G  + +EL        P       ++ R
Sbjct: 338 AEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVAR 378

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 81.4 bits (200), Expect = 1e-18
 Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 18/134 (13%)

Query: 88  NGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTHWWAF 135
                CAF  E +Q   G I+P  NYL+ VY              VQ G GR        
Sbjct: 183 KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRT---GKLL 239

Query: 136 QLQGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVAN 194
            +   ++ PD++ +GK +  GH P++AV+   +I    +    E+ +TYGGNP++ ++  
Sbjct: 240 CVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPG--EHGSTYGGNPLAASICV 297

Query: 195 AVMEVLETENLREH 208
             + VL  E L E+
Sbjct: 298 EALNVLINEKLCEN 311

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEA--QHVITRPP 43
           +    ++ DVRG GL   +E             +     +ITR  
Sbjct: 327 LKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDV 371

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score = 79.4 bits (195), Expect = 5e-18
 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 20/151 (13%)

Query: 77  DVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVG 124
           DV+ L  A+        A   E +Q  GG       +LR   +             +Q G
Sbjct: 166 DVEALKRAVDEE---TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTG 222

Query: 125 FGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYG 184
            GR G  +     +   I+PDI+T+ K +G G P+   +  +E+A+S  + G  +  T+G
Sbjct: 223 MGRTGKRFAF---EHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGG--HGTTFG 277

Query: 185 GNPVSCAVANAVMEVLETENLREHALDVGNQ 215
           GNP++ A   A +  LE   L E A ++G  
Sbjct: 278 GNPLAMAAGVAAIRYLERTRLWERAAELGPW 308

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score = 76.0 bits (186), Expect = 1e-16
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 13/144 (9%)

Query: 76  QDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKHV----------QVGF 125
            D++ +      N         E +    G I+P A +L  + +            +V  
Sbjct: 184 NDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMT 243

Query: 126 GRVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETG-VEYFNTYG 184
           G    +    +  G  + PD+ T+GK +G G PV A    +EI +     G +    T  
Sbjct: 244 GFRIAYGGVQEKFG--VTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLS 301

Query: 185 GNPVSCAVANAVMEVLETENLREH 208
           GNP++       +E+L      E+
Sbjct: 302 GNPLAMTAGIKTLELLRQPGTYEY 325

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score = 46.6 bits (109), Expect = 8e-07
 Identities = 43/188 (22%), Positives = 71/188 (37%), Gaps = 17/188 (9%)

Query: 24  CRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDLIE 83
                  A S       +     +  +          P  +       +       DLI+
Sbjct: 136 WHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLID 195

Query: 84  AMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYK------------HVQVGFGRVGTH 131
                     AF AE + S GG I  P  Y+  + +              Q G GR GT 
Sbjct: 196 RQSSG--NLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM 253

Query: 132 WWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCA 191
           +   +   D + PDI+T+ K +G G P+AA++T+  I +   E G  ++ T+  +P+  A
Sbjct: 254 FACQR---DGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAA 310

Query: 192 VANAVMEV 199
           V   V++V
Sbjct: 311 VGLRVLDV 318

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 18/41 (43%), Positives = 23/41 (56%)

Query: 1   MARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITR 41
           M R+  IGDVRG GL +GVE+V  R+ K PA      +   
Sbjct: 343 MERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRE 383

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

 Score = 40.4 bits (93), Expect = 9e-05
 Identities = 42/214 (19%), Positives = 72/214 (33%), Gaps = 21/214 (9%)

Query: 20  ELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQ 79
             +T R      T  A  V        S  +           A        G    +D+ 
Sbjct: 136 RFLTFRNGYHGDTFGAMSVCDPD---NSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMV 192

Query: 80  DLIEAMGRNGKRPCAFFAESLQ-SCGGQIIPPANYLREVYKH------------VQVGFG 126
                M  +     A   E +    GG  +    +L+ + K             +  GFG
Sbjct: 193 GFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFG 252

Query: 127 RVGTHWWAFQLQGDDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYF---NTY 183
           R  T         +     +       G    ++A +TT+E+A++        F    T+
Sbjct: 253 R--TGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTF 310

Query: 184 GGNPVSCAVANAVMEVLETENLREHALDVGNQLH 217
            GNP++CA ANA + +LE+ + ++   D+  QL 
Sbjct: 311 MGNPLACAAANASLAILESGDWQQQVADIEVQLR 344

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	100.0
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	100.0
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	100.0
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	100.0
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	100.0
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.44
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.26
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.26
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	98.76
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	98.71
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	97.15
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	96.99
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	96.93
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	96.91
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	96.91
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	96.86
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	96.68
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	95.53
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	95.43
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	95.29
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	95.1
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	94.21
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	93.98
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	93.63
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	93.36
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	92.82
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	92.8
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	92.35
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	92.13
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	91.93
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	91.5
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	91.2
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	91.04
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	90.97
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	90.88
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	90.26
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	89.39
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	88.9
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	87.63
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	86.38
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	85.83
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	85.61
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	85.6
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	85.4
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	82.08
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	81.82

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-37  Score=271.19  Aligned_cols=139  Identities=36%  Similarity=0.620  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      ++++++.+     ..+++||||+|||||++|+++|+++||+.||++            |||||||||+ +|+++++|  |
T Consensus       177 ~~~l~~~l-----~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~-~~a~~~~g--v  248 (404)
T d2byla1         177 LPALERAL-----QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR-WLAVDYEN--V  248 (404)
T ss_dssp             HHHHHHHH-----TSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGT--C
T ss_pred             HHHHHHhc-----CCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc-cchhhhcC--C
Confidence            34455544     246899999999999999999999999999999            9999999997 89999998  9


Q ss_pred             CCchhcccccccCC-cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +|||+||||+|||| +|+|++++++++++.+.+.  .+++||+|||++||||+++|++|+++++.+++++++++|+++|+
T Consensus       249 ~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~--~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~  326 (404)
T d2byla1         249 RPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPG--EHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGIILRNELM  326 (404)
T ss_dssp             CCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTT--SSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECchhhCCCccceeeeechhhhhccCCC--CCCcCCCcCHHHHHHHHHHHHHHHhcCchhhhhHhhHHHHHHHH
Confidence            99999999999999 7999999999999988654  68899999999999999999999999999999999999999998


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       327 ~l  328 (404)
T d2byla1         327 KL  328 (404)
T ss_dssp             TS
T ss_pred             hh
Confidence            76

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=100.00  E-value=2.8e-37  Score=272.27  Aligned_cols=147  Identities=31%  Similarity=0.518  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcC
Q psy6205          72 VKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQG  139 (224)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g  139 (224)
                      ..++++++..+..  ..+++|||||+|||||++|+++||++|++.||++            |||||||||+ +|+++++|
T Consensus       184 ~~~~~~~~~~~~~--~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~-~~~~~~~g  260 (431)
T d1zoda1         184 LAELDYAFDLIDR--QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT-MFACQRDG  260 (431)
T ss_dssp             HHHHHHHHHHHHH--HCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHT
T ss_pred             hhhHHHHHHHHHH--hccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccc-ccccccCC
Confidence            3445555555553  3678999999999999999999999999999999            9999999997 89999998


Q ss_pred             CCCCCchhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy6205         140 DDIIPDIVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTP  219 (224)
Q Consensus       140 ~~v~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~  219 (224)
                        |+|||+|+||+||||+|++++++++++++.+......+++||++||++|||++++|++++++++.++++++|+++.++
T Consensus       261 --v~PDi~~~gK~l~gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~  338 (431)
T d1zoda1         261 --VTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRG  338 (431)
T ss_dssp             --CCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             --CCcchhccccccccccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhh
Confidence              999999999999999999999999999998866555678999999999999999999999999999999999999998


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      |+++
T Consensus       339 l~~~  342 (431)
T d1zoda1         339 LLDL  342 (431)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            8753

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-37  Score=272.38  Aligned_cols=132  Identities=30%  Similarity=0.494  Sum_probs=125.4

Q ss_pred             cCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhccccccc
Q psy6205          87 RNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMG  154 (224)
Q Consensus        87 ~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~  154 (224)
                      ...++|||||+|||||++|+++|+++||+.||++            |+|||||||. +|+++++|  ++|||+|+||+||
T Consensus       194 ~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~-~~a~~~~g--v~PDi~~~gK~l~  270 (425)
T d1sffa_         194 AAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT-LFAMEQMG--VAPDLTTFAKSIA  270 (425)
T ss_dssp             CCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTT--SCCSEEEECGGGG
T ss_pred             ccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcch-hhHHHhcC--CCccceecccccC
Confidence            4678999999999999999999999999999999            9999999997 89999998  9999999999999


Q ss_pred             CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         155 NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       155 ~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ||+|+||+++++++++.+...  .+++||+|||++||||+++|++|+++++.+++++++++|+++|+++
T Consensus       271 gG~P~~av~~~~~i~~~~~~~--~~~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~  337 (425)
T d1sffa_         271 GGFPLAGVTGRAEVMDAVAPG--GLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAI  337 (425)
T ss_dssp             TSSCCEEEEEEHHHHTTSCTT--SBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEEcHHHHHhhCCC--CCCCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhh
Confidence            999999999999999988654  6789999999999999999999999999999999999999998764

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.3e-36  Score=263.04  Aligned_cols=130  Identities=31%  Similarity=0.530  Sum_probs=124.4

Q ss_pred             CCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccCC
Q psy6205          89 GKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGNG  156 (224)
Q Consensus        89 ~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~G  156 (224)
                      .++|||||+|||||++|+++++++|++.+|++            |+|||||||+ +|+++++|  ++|||+|+||+||||
T Consensus       175 ~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~-~~~~~~~~--v~PDi~~~gK~l~gG  251 (387)
T d1vefa1         175 DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK-RFAFEHFG--IVPDILTLAKALGGG  251 (387)
T ss_dssp             CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHT--CCCSEEEECGGGGTT
T ss_pred             CCCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCC-CcccccCC--cCCceeeecccCCCC
Confidence            46899999999999999999999999999999            9999999997 89999998  999999999999999


Q ss_pred             cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhc
Q psy6205         157 HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       157 ~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|++++++++++++.+...  .|++||+|||++||||+++|++++++++.++++++|++|+++|+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~--~~g~T~~gnPla~aaa~a~L~~l~~~~~~~~v~~~g~~l~~~L~~l  316 (387)
T d1vefa1         252 VPLGVAVMREEVARSMPKG--GHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI  316 (387)
T ss_dssp             SSCEEEEEEHHHHHTSCTT--SSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTS
T ss_pred             ccccccccceeeeeccccC--CccccCCCCcchhhhcccchhhcccccccchHhhhhHHHHHHHHhc
Confidence            9999999999999988655  6889999999999999999999999999999999999999999876

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=100.00  E-value=1.8e-36  Score=266.74  Aligned_cols=142  Identities=24%  Similarity=0.327  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      ++++|++++   +++++|||||+|||||++|+++||++|++.+|++            ||||| |||+ +|+++++|  +
T Consensus       186 ~~~le~~~~---~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~-~~~~~~~g--i  258 (427)
T d2gsaa_         186 LEAVKALFA---ENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAY-GGVQEKFG--V  258 (427)
T ss_dssp             HHHHHHHHT---TSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT-TCHHHHTT--C
T ss_pred             HHHHHHHHH---hCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecc-cchHHhcC--C
Confidence            566666664   4788999999999999999999999999999999            99999 8897 89999998  9


Q ss_pred             CCchhcccccccCCcccccceecHHHHHhhhcC-CcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEIAKSFQET-GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i~~~~~~~-~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~  221 (224)
                      +|||+|+||+||||+|+||+++++++++.+.+. ...|++||+|||++||||+++|++|+++++.++++++|++|+++|+
T Consensus       259 ~PDi~~~gK~lggG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~  338 (427)
T d2gsaa_         259 TPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLL  338 (427)
T ss_dssp             CCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHhhhhccCCCcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHH
Confidence            999999999999999999999999999998753 2457799999999999999999999999999999999999999998


Q ss_pred             hc
Q psy6205         222 EN  223 (224)
Q Consensus       222 ~l  223 (224)
                      ++
T Consensus       339 ~l  340 (427)
T d2gsaa_         339 AI  340 (427)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=100.00  E-value=2.4e-36  Score=264.22  Aligned_cols=130  Identities=33%  Similarity=0.603  Sum_probs=123.4

Q ss_pred             CCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccC
Q psy6205          88 NGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGN  155 (224)
Q Consensus        88 ~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~  155 (224)
                      ++++|||||+|||||++|+++||++|++.||++            |||||||||+ +|++|++|  |+|||+|+||+|||
T Consensus       183 ~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~-~~~~e~~g--v~PDivt~gK~l~g  259 (404)
T d1z7da1         183 KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCVHHYN--VKPDVILLGKALSG  259 (404)
T ss_dssp             TSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGT--CCCSEEEECGGGGT
T ss_pred             cCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccc-cccccccC--CCCCEEEEcccccC
Confidence            467999999999999999999999999999999            9999999997 89999998  99999999999999


Q ss_pred             C-cccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         156 G-HPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       156 G-~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      | +|+|++++++++++.+.+.  .+++||+|||++||||+++|++++++++.++++++++++.++|++
T Consensus       260 G~~p~~~v~~~~~i~~~~~~~--~~~~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~  325 (404)
T d1z7da1         260 GHYPISAVLANDDIMLVIKPG--EHGSTYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKR  325 (404)
T ss_dssp             TSSCCEEEEECHHHHTTCCTT--CCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccccchHHHHccCCCC--CcCcCCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHH
Confidence            9 7999999999999988654  688999999999999999999999999999999999999988865

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.1e-35  Score=260.12  Aligned_cols=143  Identities=27%  Similarity=0.473  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEcccc-CCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQ-SCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDD  141 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~-~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~  141 (224)
                      ++++++.+.   ..+++|||||+||++ ++||+++||++|++.||++            |||||||||+ +|+++++|  
T Consensus       191 ~~~~~~~~~---~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~~~~~~~--  264 (429)
T d1s0aa_         191 MVGFARLMA---AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK-LFACEHAE--  264 (429)
T ss_dssp             GHHHHHHHH---HHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGT--
T ss_pred             hhhhhhhhh---hcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccc-ccccccce--
Confidence            445555444   367899999999987 6788999999999999999            9999999997 89999998  


Q ss_pred             CCCchhcccccccCC-cccccceecHHHHHhhhcC---CcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy6205         142 IIPDIVTVGKPMGNG-HPVAAVITTKEIAKSFQET---GVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLH  217 (224)
Q Consensus       142 v~pDi~~~~K~l~~G-~p~~av~~~~~i~~~~~~~---~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~  217 (224)
                      |+|||+|+||+|+|| +|+|++++++++++.+.+.   ...|++||+|||++||||+++|++|+++++.++++++|++|+
T Consensus       265 v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~  344 (429)
T d1s0aa_         265 IAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLR  344 (429)
T ss_dssp             CCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ecccccccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccccchhhHHHHHHH
Confidence            999999999999988 7999999999999988653   235679999999999999999999999999999999999999


Q ss_pred             Hhhhhc
Q psy6205         218 TPKKEN  223 (224)
Q Consensus       218 ~~l~~l  223 (224)
                      ++|+++
T Consensus       345 ~~L~~l  350 (429)
T d1s0aa_         345 EQLAPA  350 (429)
T ss_dssp             HHHGGG
T ss_pred             HHHHHh
Confidence            999875

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.5e-33  Score=248.78  Aligned_cols=145  Identities=26%  Similarity=0.371  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhh
Q psy6205          70 LGVKYAQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQL  137 (224)
Q Consensus        70 ~~~~~~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~  137 (224)
                      ....+++++++++.....++++|||||+|||||++|++++|++|++.||++            |||||||||+ ||++|+
T Consensus       227 ~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~-~~~~e~  305 (461)
T d1ohwa_         227 EEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK-FWAHEH  305 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSS-SSGGGG
T ss_pred             hhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccc-cccccc
Confidence            344667888888887767889999999999999999999999999999999            9999999997 899999


Q ss_pred             cCCCCCCchhcccccccCCc-ccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy6205         138 QGDDIIPDIVTVGKPMGNGH-PVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQL  216 (224)
Q Consensus       138 ~g~~v~pDi~~~~K~l~~G~-p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l  216 (224)
                      +|.+..|||+|+||+|+||+ |.++++..        .....+.+||+|||++||+|+++|++|++++++++++++|++|
T Consensus       306 ~gi~~~PDiv~~gK~l~~g~~~~~~~~~~--------~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l  377 (461)
T d1ohwa_         306 WGLDDPADVMTFSKKMMTGGFFHKEEFRP--------NAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVL  377 (461)
T ss_dssp             GCCSSCCSEEEECGGGSSEEEEECGGGSC--------SSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             cccccCchhhhhhhccccccccccccccc--------ccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHH
Confidence            98333699999999999985 44443322        1123678999999999999999999999999999999999999


Q ss_pred             HHhhhhc
Q psy6205         217 HTPKKEN  223 (224)
Q Consensus       217 ~~~l~~l  223 (224)
                      +++|+++
T Consensus       378 ~~~l~~l  384 (461)
T d1ohwa_         378 LTGLLDL  384 (461)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=3.4e-13  Score=116.32  Aligned_cols=147  Identities=18%  Similarity=0.212  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhC--CccccccchhhhhcCCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVG--FGRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG--~GrtG~~~~~~~~~g~~v~p  144 (224)
                      .++++++++.....+.+...|++|+|+++.|.+.|.+++.+..++.        ++++  +|.+|.  +..++++..-.+
T Consensus       161 ~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~--G~~~~~~~~~~~  238 (401)
T d1fc4a_         161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGR--GSHEYCDVMGRV  238 (401)
T ss_dssp             HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSC--CHHHHTTCTTCC
T ss_pred             hHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCC--ccchhccCCCCC
Confidence            3556666665545567778999999999999998877777766666        5443  344554  467788721245


Q ss_pred             chh--cccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhh
Q psy6205         145 DIV--TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKK  221 (224)
Q Consensus       145 Di~--~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~  221 (224)
                      ||+  |++|+++ |.+-|++.+++++++.+...+..+.+|.+.+|..+++++++++.+. .+++.++++++.++|++.++
T Consensus       239 dii~~tl~Ka~g-g~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~  317 (401)
T d1fc4a_         239 DIITGTLGKALG-GASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMS  317 (401)
T ss_dssp             SEEEEESSSTTC-SSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEeecccccc-cCCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhc
Confidence            665  7999995 4556779999999999876656677888999999999999999985 46789999999999999998


Q ss_pred             hcC
Q psy6205         222 ENN  224 (224)
Q Consensus       222 ~l~  224 (224)
                      +.+
T Consensus       318 ~~g  320 (401)
T d1fc4a_         318 AAG  320 (401)
T ss_dssp             HTT
T ss_pred             ccC
Confidence            754

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.26  E-value=1.3e-11  Score=105.94  Aligned_cols=142  Identities=21%  Similarity=0.217  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH---------HHhC-CccccccchhhhhcCCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH---------VQVG-FGRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~---------v~tG-~GrtG~~~~~~~~~g~~v~p  144 (224)
                      .++++++++..  .+.+-..|++|.|+++.|.+.|.+++.+..++.         .-.| +|.+|+  +..++++..-..
T Consensus       163 ~~~l~~l~~~~--~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~--G~~~~~~~~~~~  238 (396)
T d2bwna1         163 VAHLRELIAAD--DPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGA--GVAERDGLMHRI  238 (396)
T ss_dssp             HHHHHHHHHHS--CTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSC--CHHHHHTCGGGC
T ss_pred             HHHhhhHHhhh--cccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeeeeccccc--cchhhcCCceee
Confidence            34566666542  344556899999999999999999999988888         3334 578886  456788721234


Q ss_pred             chh--cccccccC--CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHH
Q psy6205         145 DIV--TVGKPMGN--GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLH  217 (224)
Q Consensus       145 Di~--~~~K~l~~--G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~  217 (224)
                      ||+  ||||++|+  |+    |++++++.+.+...++.+.+|.+.+|..+++++++++++.+   +.+.++++.+.++++
T Consensus       239 di~~gTlsKa~g~~Gg~----v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~  314 (396)
T d2bwna1         239 DIFNGTLAKAYGVFGGY----IAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLK  314 (396)
T ss_dssp             SEEEEESSSTTCSCCEE----EEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeecccccccccccc----cchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            665  79999984  46    89999999999877667788889999999999999999954   345677888999999


Q ss_pred             HhhhhcC
Q psy6205         218 TPKKENN  224 (224)
Q Consensus       218 ~~l~~l~  224 (224)
                      ++|+++|
T Consensus       315 ~~l~~~g  321 (396)
T d2bwna1         315 MRLKALG  321 (396)
T ss_dssp             HHHHHHT
T ss_pred             HHHHhcC
Confidence            9988754

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=1.6e-11  Score=105.07  Aligned_cols=141  Identities=18%  Similarity=0.244  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHh-C-CccccccchhhhhcCCCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQV-G-FGRVGTHWWAFQLQGDDIIP  144 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~t-G-~GrtG~~~~~~~~~g~~v~p  144 (224)
                      .+++++.++   +.+.+...|++|.+.++.|.+.|-+++.+.+++.        .++ | +|.+|.  +.+++++  +.+
T Consensus       154 ~~~le~~l~---~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~--G~~~~~~--~~~  226 (383)
T d1bs0a_         154 VTHLARLLA---SPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGR--GSCWLQK--VKP  226 (383)
T ss_dssp             HHHHHHHHH---SCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGC--CHHHHTT--CCC
T ss_pred             HHHHHHHhc---ccCCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCccc--chHHHcC--Ccc
Confidence            455666665   3556677899999999999999999999888887        222 2 467775  4678898  889


Q ss_pred             chhc--ccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHh
Q psy6205         145 DIVT--VGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHTP  219 (224)
Q Consensus       145 Di~~--~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~~  219 (224)
                      |+++  +||++|  .+-|+++++.++.+.+...+..+.+|...+|..+++++++++++++   +...++++++..++++.
T Consensus       227 ~~~~~t~~ka~g--~~Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~  304 (383)
T d1bs0a_         227 ELLVVTFGKGFG--VSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAG  304 (383)
T ss_dssp             SEEEEESSSTTS--SCCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccc--ccccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            8775  666665  3445699999999999876667788999999999999999999864   35777888999999999


Q ss_pred             hhhcC
Q psy6205         220 KKENN  224 (224)
Q Consensus       220 l~~l~  224 (224)
                      |+++|
T Consensus       305 l~~~g  309 (383)
T d1bs0a_         305 VQDLP  309 (383)
T ss_dssp             HTTSS
T ss_pred             HHhcC
Confidence            98764

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=98.76  E-value=6.1e-09  Score=90.29  Aligned_cols=145  Identities=17%  Similarity=0.134  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHh------CCccccccchhhh
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQV------GFGRVGTHWWAFQ  136 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~t------G~GrtG~~~~~~~  136 (224)
                      +++|+++++..  .++.++++++|++++.+|..+++.+++++++++            +++      +++|++. +|+.+
T Consensus       168 ~~~l~~~i~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~-~~~~~  244 (465)
T d1ax4a_         168 IKKLKENIAQH--GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPK-YKNAT  244 (465)
T ss_dssp             HHHHHHHHHHH--CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGG-GTTCC
T ss_pred             HHHHHHHHHhh--ccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhccccccccc-ccccc
Confidence            57788888753  556889999999999999999999999999999            333      4667764 56655


Q ss_pred             hcCCCCCCc------hhcccccccCCccccccee-cH--HHHHhhhcC--CcccccCCCCcHHHHHHHHH-HHHHHhhhh
Q psy6205         137 LQGDDIIPD------IVTVGKPMGNGHPVAAVIT-TK--EIAKSFQET--GVEYFNTYGGNPVSCAVANA-VMEVLETEN  204 (224)
Q Consensus       137 ~~g~~v~pD------i~~~~K~l~~G~p~~av~~-~~--~i~~~~~~~--~~~~~~T~~~~p~~~aaa~a-~l~~~~~~~  204 (224)
                      ...  +.||      +++++|.-+++.|.+++++ ++  .+++.....  ......|+.+....+.++.+ .++....++
T Consensus       245 ~~~--i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~  322 (465)
T d1ax4a_         245 IKE--VIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEE  322 (465)
T ss_dssp             HHH--HHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred             hhh--hccccccccceeEeecccCcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHHHHHHhhhhHHhhhHH
Confidence            554  5555      4566666666666665554 32  222222111  11233455555444444443 344445667


Q ss_pred             HHHHHHHHHHHHHHhhhhcC
Q psy6205         205 LREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       205 l~~~~~~~g~~l~~~l~~l~  224 (224)
                      ..++..+..++|.++|++++
T Consensus       323 ~~~~~~~~~~~l~~~L~~~g  342 (465)
T d1ax4a_         323 YLHYRIGQVKYLGDRLREAG  342 (465)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            88888888999999998764

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=2.8e-08  Score=86.19  Aligned_cols=147  Identities=13%  Similarity=0.035  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HH---hCCccccccchhhhhcC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQ---VGFGRVGTHWWAFQLQG  139 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~---tG~GrtG~~~~~~~~~g  139 (224)
                      .++|++.++..  +++.++++++|++++++|..+++.+++++++++            ++   +.+++.+. .+++.+.+
T Consensus       169 ~~~l~~~i~~~--~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~-~~~~~~~~  245 (467)
T d2v1pa1         169 LEGLERGIEEV--GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQR-EAEYKDWT  245 (467)
T ss_dssp             HHHHHHHHHHH--CGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHH-CGGGTTSC
T ss_pred             HHHHHHHHhhc--CccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccc-cccccCCc
Confidence            56778777753  567899999999999999999999999999999            21   11222332 23333322


Q ss_pred             C-------CCCCchhcccccccCCcccccceec--HHHHHhhhc---C--CcccccCCCCcHHHHHHHHHH-HHHHhhhh
Q psy6205         140 D-------DIIPDIVTVGKPMGNGHPVAAVITT--KEIAKSFQE---T--GVEYFNTYGGNPVSCAVANAV-MEVLETEN  204 (224)
Q Consensus       140 ~-------~v~pDi~~~~K~l~~G~p~~av~~~--~~i~~~~~~---~--~~~~~~T~~~~p~~~aaa~a~-l~~~~~~~  204 (224)
                      .       .-..|++++++.-+++.|.+++++.  +.+......   .  ...+..|+.+.+.+++++.++ ++....++
T Consensus       246 ~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  325 (467)
T d2v1pa1         246 IEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLD  325 (467)
T ss_dssp             HHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             ccccchhhcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHH
Confidence            0       0236777777665555566666653  223322211   0  113345666666655555544 55556778


Q ss_pred             HHHHHHHHHHHHHHhhhhcC
Q psy6205         205 LREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       205 l~~~~~~~g~~l~~~l~~l~  224 (224)
                      +.++..+++++|.++|++.+
T Consensus       326 ~~~~~~~~~~~l~~~L~~~~  345 (467)
T d2v1pa1         326 WLAYRIAQVQYLVDGLEEIG  345 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999998753

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=97.15  E-value=9.8e-05  Score=62.79  Aligned_cols=80  Identities=31%  Similarity=0.348  Sum_probs=48.3

Q ss_pred             CCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcce----eecC-CCccccCCCCCCCCCChhHHHHHHHH
Q psy6205           3 RYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMS----TEAP-CPDVYRGKYPADKYPDEDLGVKYAQD   77 (224)
Q Consensus         3 ~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~----~~vp-~P~~yr~~~~~~~~~~~~~~~~~~~~   77 (224)
                      +||.|++|||.|+|+++||+.+..+..+....+..+....+..+.    ...+ ..+..+..++-+.  +++..++.++.
T Consensus       345 ~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~l~Ppl~i--t~~eid~~~~~  422 (431)
T d1zoda1         345 RFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTV--SEDEIDLGLSL  422 (431)
T ss_dssp             HCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTC--CHHHHHHHHHH
T ss_pred             cCCCeEEEeecceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecCCCCEEEEECCCCC--CHHHHHHHHHH
Confidence            589999999999999999999888887766544443333222221    1111 1222222111111  26677777888


Q ss_pred             HHHHHHH
Q psy6205          78 VQDLIEA   84 (224)
Q Consensus        78 l~~~~~~   84 (224)
                      |++.+++
T Consensus       423 l~~al~~  429 (431)
T d1zoda1         423 LGQAIER  429 (431)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877764

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=96.99  E-value=0.00043  Score=54.92  Aligned_cols=145  Identities=7%  Similarity=-0.108  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v  142 (224)
                      ++.+++.+...........++++++++...+....+.+.++++.++            +++++++++. ++.........
T Consensus       118 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~~~~~~~~  196 (345)
T d1v72a1         118 IVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSL-GCSPAEMTWKA  196 (345)
T ss_dssp             HHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHH-TCCTTTTTGGG
T ss_pred             HHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceecccc-ccCHHHhhccc
Confidence            3445544432112234567888888888877778888888888877            6776666664 34444333112


Q ss_pred             CCchhcccccccCCcccccceecHHH-HHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHH
Q psy6205         143 IPDIVTVGKPMGNGHPVAAVITTKEI-AKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHT  218 (224)
Q Consensus       143 ~pDi~~~~K~l~~G~p~~av~~~~~i-~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~  218 (224)
                      .++.++++|..+++...+........ .......  ....+ ...+...+++.+.+..+.+   .....+...+.+++.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (345)
T d1v72a1         197 GVDALSFGATKNGVLAAEAIVLFNTSLATEMSYR--RKRAG-HLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQ  273 (345)
T ss_dssp             TCCEEEECCGGGTCSSCEEEEESSGGGHHHHHHH--HHHTT-CCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCccccccccccccccchhhhhhhcccc--ccccc-cccchhhHHhhhhHHHHHHhhhhhhccchhhHHHHHHH
Confidence            34556677777665444444443332 2222211  11112 2222233333344444433   3445555666677777


Q ss_pred             hhhhc
Q psy6205         219 PKKEN  223 (224)
Q Consensus       219 ~l~~l  223 (224)
                      .|+++
T Consensus       274 ~l~~~  278 (345)
T d1v72a1         274 GLEGL  278 (345)
T ss_dssp             HHTTC
T ss_pred             HHHhc
Confidence            66654

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.93  E-value=0.00046  Score=54.91  Aligned_cols=129  Identities=11%  Similarity=0.031  Sum_probs=73.1

Q ss_pred             CCCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCchhcccccccC-
Q psy6205          89 GKRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVGKPMGN-  155 (224)
Q Consensus        89 ~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~K~l~~-  155 (224)
                      ..++..+++++.+.+.|...++.+.++.++++            +++++..+.. .+......  ...+..+++|.-+. 
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~  202 (343)
T d1m6sa_         126 FPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIAS-GVPVKEYA--GYADSVMFCLSKGLC  202 (343)
T ss_dssp             SCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHH-CCCHHHHH--HTCSEEEEESSSTTC
T ss_pred             cccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEecccccccccccc-ccchhhhc--ccccccccccccccc
Confidence            34677888888888877788888999999876            5555544443 33333332  34555666666664 


Q ss_pred             CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         156 GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       156 G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      |...++++...+............+.++......+++..  ..............+...++.+.+.+
T Consensus       203 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (343)
T d1m6sa_         203 APVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGI--IALTKMVDRLKEDHENARFLALKLKE  267 (343)
T ss_dssp             CSSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHH--HHHHHSSTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccHHHHhhhHhhCcccccccchhHHHHHhhh--hhhhhhHHHHHHHHHHHHHhhhHHHH
Confidence            467788888888776554321122334333333333333  33333333444455555555555543

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.91  E-value=0.003  Score=52.91  Aligned_cols=142  Identities=10%  Similarity=-0.083  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH-----HHhCCc----cccccchhhhhcCCCCCCc
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH-----VQVGFG----RVGTHWWAFQLQGDDIIPD  145 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----v~tG~G----rtG~~~~~~~~~g~~v~pD  145 (224)
                      +++|++.+++.. ..+.+++|++...-...|.+.+-++..+.+.+.     |-.-+|    -.+.  + ....+ ....|
T Consensus       196 ~~~l~~~i~~~~-~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~--~-~~~~~-~~~~D  270 (434)
T d2z67a1         196 VEDIENAIKKEI-ELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLE--K-LKKAF-KYRVD  270 (434)
T ss_dssp             HHHHHHHHHHHH-HTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHH--H-HHHHH-TSCCS
T ss_pred             HHHHHHHHHhhh-hcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccc--c-ccccc-cCCcc
Confidence            567777776532 245778888887666678877766666666666     111111    1111  0 11111 24578


Q ss_pred             hhccc--ccccCCcccccceec-HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         146 IVTVG--KPMGNGHPVAAVITT-KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       146 i~~~~--K~l~~G~p~~av~~~-~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +++++  |.++++...+++..+ +++.+.+...  ....+...+...+.+++..+..-...++.++..++.++++++|++
T Consensus       271 ~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~  348 (434)
T d2z67a1         271 AVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLS--YPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND  348 (434)
T ss_dssp             EEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTT--SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEcCccccccCCCccccccCcHHHHHHHHhh--cccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence            88765  988765555666654 5555655432  223344444444444444444433456778888888999888876


Q ss_pred             c
Q psy6205         223 N  223 (224)
Q Consensus       223 l  223 (224)
                      +
T Consensus       349 l  349 (434)
T d2z67a1         349 L  349 (434)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.0002  Score=60.66  Aligned_cols=82  Identities=18%  Similarity=0.265  Sum_probs=51.2

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecC---CCccccCCCCCCCCCChhHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAP---CPDVYRGKYPADKYPDEDLGVKYAQDV   78 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp---~P~~yr~~~~~~~~~~~~~~~~~~~~l   78 (224)
                      ++||.|++|||.|+|+++||+.+..+..+.......+..+.+..+.+..+   .++..+-..+-..  +++..++.++.+
T Consensus       339 ~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i~~~PpL~i--t~~eid~~l~~l  416 (425)
T d1sffa_         339 EKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTI--EDAQIRQGLEII  416 (425)
T ss_dssp             HTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTC--CHHHHHHHHHHH
T ss_pred             hhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCCCCEEEEECCCCC--CHHHHHHHHHHH
Confidence            46899999999999999999987776666554444444443333333222   2222221111111  367778888889


Q ss_pred             HHHHHHH
Q psy6205          79 QDLIEAM   85 (224)
Q Consensus        79 ~~~~~~~   85 (224)
                      ++.++++
T Consensus       417 ~~al~ei  423 (425)
T d1sffa_         417 SQCFDEA  423 (425)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8888876

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=96.86  E-value=0.0029  Score=53.89  Aligned_cols=145  Identities=13%  Similarity=0.058  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccc-cccchhh----hhcCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRV-GTHWWAF----QLQGDD  141 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~Grt-G~~~~~~----~~~g~~  141 (224)
                      +++|++.|+..  .++.++.+++|-....+|-.+.+.+++++++++        +.=|- |. |..++..    .+.+..
T Consensus       160 ~~~le~~I~~~--~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a-~~~~~a~~~~~~~~~~~~~~  236 (456)
T d1c7ga_         160 LNKLATLIKEK--GAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDAT-RCVENAYFIKEQEAGYENVS  236 (456)
T ss_dssp             HHHHHHHHHHH--CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECT-THHHHHHHHHHHSTTCTTSC
T ss_pred             HHHHHHHhhhc--CCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcc-hhhcchhhhcccccccCCCC
Confidence            56777777753  456888999998877777788999999999988        11110 10 0000000    001100


Q ss_pred             ---------CCCchhc--ccccccCCcccccce-e-cHHHHHhhhcCC--cccccCCCCcHHH-HHHHHHHHHHHhhhhH
Q psy6205         142 ---------IIPDIVT--VGKPMGNGHPVAAVI-T-TKEIAKSFQETG--VEYFNTYGGNPVS-CAVANAVMEVLETENL  205 (224)
Q Consensus       142 ---------v~pDi~~--~~K~l~~G~p~~av~-~-~~~i~~~~~~~~--~~~~~T~~~~p~~-~aaa~a~l~~~~~~~l  205 (224)
                               -.-|+++  ..|.++  .|.|+++ + ++++++......  .....|+++.... +++....+....+++.
T Consensus       237 i~~i~~~~~~~ad~~s~s~~K~~~--~~~GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~  314 (456)
T d1c7ga_         237 IKDIVHEMFSYADGCTMSGKKDCL--VNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEY  314 (456)
T ss_dssp             HHHHHHHHHTTCSEEEEETTTTTC--CSSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHH
T ss_pred             hhhhccccccccccEEEecccccc--ccceeEEEcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhcCHHH
Confidence                     1246664  455554  2333333 3 355666544211  1122455554433 3333344555555666


Q ss_pred             HHHHHHHHHHHHHhhhhcC
Q psy6205         206 REHALDVGNQLHTPKKENN  224 (224)
Q Consensus       206 ~~~~~~~g~~l~~~l~~l~  224 (224)
                      .++..+..++|.++|++++
T Consensus       315 l~~r~~~~~~L~e~L~~~g  333 (456)
T d1c7ga_         315 IEHRVKQVRYLGDKLREAG  333 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            6666777789999888764

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.68  E-value=0.0048  Score=49.81  Aligned_cols=138  Identities=11%  Similarity=0.109  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCch
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDI  146 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi  146 (224)
                      .+++++.++... ...++..|+++-+....|.+.+-++..+.+++.        ++ ++|..+.   ....+|    .|+
T Consensus       125 ~~~l~~~i~~~~-k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~-~~g~~~~---~~~~~g----~D~  195 (364)
T d2e7ja1         125 PENFAQTIEETK-KRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAY-AIGRMPV---SLKEIG----ADF  195 (364)
T ss_dssp             HHHHHHHHHHHT-TTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTT-TBTTBCC---CHHHHT----CSE
T ss_pred             HHHHHhhhhhhc-ccCCceEEEeecCCCCCceeecchhheeccccccchhhccccc-hhhhhhh---cccccc----cce
Confidence            467777776532 235678888888888889888866666666665        33 2332221   122233    688


Q ss_pred             hccc--ccccCCcccccceecHHHHHhhhcCCcc-------cc-cCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHH
Q psy6205         147 VTVG--KPMGNGHPVAAVITTKEIAKSFQETGVE-------YF-NTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQ  215 (224)
Q Consensus       147 ~~~~--K~l~~G~p~~av~~~~~i~~~~~~~~~~-------~~-~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~  215 (224)
                      ++++  |.+++.-..|.+.+++++.+.+......       +. .|..+.+  ..+..+.++.+.+ -+...+..+..++
T Consensus       196 ~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~  273 (364)
T d2e7ja1         196 IVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGAT--IITLMASFPHVRERIKRWDEEVEKARR  273 (364)
T ss_dssp             EEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHH--HHHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred             eeeccccccCCCCCEEEEEECHHHHHHHHhhccccCcccccccccccchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8766  9998544568889998887765432111       11 2223332  2334445555432 1222233345667


Q ss_pred             HHHhhhhc
Q psy6205         216 LHTPKKEN  223 (224)
Q Consensus       216 l~~~l~~l  223 (224)
                      +.+.|+++
T Consensus       274 ~~~~l~~~  281 (364)
T d2e7ja1         274 FAAEMEKL  281 (364)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            77777664

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=95.53  E-value=0.0034  Score=52.48  Aligned_cols=25  Identities=28%  Similarity=0.437  Sum_probs=21.3

Q ss_pred             CCCCcceeeccCCceeEEEEeecCC
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRK   26 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~   26 (224)
                      .+||.|.+|||+|+|++++|..+..
T Consensus       328 ~~~~~v~~vrg~Gl~~~i~~~~~~~  352 (404)
T d1z7da1         328 KDSKIVRDVRGKGLLCAIEFKNELV  352 (404)
T ss_dssp             TTCTTEEEEEEETTEEEEEECTTTC
T ss_pred             hcCCCeEEEEeeCcEEEEEEcCCcc
Confidence            4689999999999999999975433

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0017  Score=54.91  Aligned_cols=72  Identities=13%  Similarity=-0.052  Sum_probs=39.6

Q ss_pred             CCCCcceeeccCCceeEEEEeecCCCCCCccccchhhhccCCCcceeecCCCccccCCCCCCCCCChhHHHHHHHHHHHH
Q psy6205           2 ARYPLIGDVRGIGLFVGVELVTCRKQKTPATSEAQHVITRPPVRMSTEAPCPDVYRGKYPADKYPDEDLGVKYAQDVQDL   81 (224)
Q Consensus         2 ~~~p~v~~vRg~Gl~~gielv~~~~t~~p~~~~a~~l~~~~~~~~~~~vp~P~~yr~~~~~~~~~~~~~~~~~~~~l~~~   81 (224)
                      +++|.|+||||.|+|+++|+......        ..+....+..+.+..+..+..|..++-.-  +++..++.++.|++.
T Consensus       351 ~~~~~v~~vrg~Gl~~~~e~~~~~~~--------~~~~~~~~~~Gl~~~~~g~~i~~~Ppl~i--t~~eid~~~~~l~~a  420 (429)
T d1s0aa_         351 RDAEMVADVRVLGAIGVVETTHPVNM--------AALQKFFVEQGVWIRPFGKLIYLMPPYII--LPQQLQRLTAAVNRA  420 (429)
T ss_dssp             GGCTTEEEEEEETTEEEEEESSCBCH--------HHHHHHHHHTTEECCCBTTEEEECCCTTC--CHHHHHHHHHHHHHH
T ss_pred             ccCCceEEEeecccEEEEEecCcccH--------HHHHHHHHHCCcEEEecCCEEEEeCCcCC--CHHHHHHHHHHHHHH
Confidence            45789999999999999999643221        11222222233443444444433222111  256666666666665


Q ss_pred             HH
Q psy6205          82 IE   83 (224)
Q Consensus        82 ~~   83 (224)
                      ++
T Consensus       421 l~  422 (429)
T d1s0aa_         421 VQ  422 (429)
T ss_dssp             TS
T ss_pred             HH
Confidence            54

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=95.29  E-value=0.046  Score=44.23  Aligned_cols=128  Identities=13%  Similarity=0.077  Sum_probs=82.1

Q ss_pred             CCCceEEEEccccCCCCcccCCHHHHHHHHHH-----------HHhCCccccccchhhhhcCCCCCCchhccc--ccccC
Q psy6205          89 GKRPCAFFAESLQSCGGQIIPPANYLREVYKH-----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGN  155 (224)
Q Consensus        89 ~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-----------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~  155 (224)
                      ..++.++++..+....|.+.|.++..+.+++.           ...++|..=   +-.+.    ..+|+++++  |.+++
T Consensus       143 ~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~---~~~~~----~~~D~~~~s~~K~~~~  215 (381)
T d1elua_         143 GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP---LDFSR----LEVDYYAFTGHKWFAG  215 (381)
T ss_dssp             CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBC---CCTTT----SCCSEEEEESSSTTCC
T ss_pred             cccccccccccccccccccchhhHHHHHHhhccccccccccccccccccccc---ccccc----cccccccccccccccc
Confidence            35788999999998899999988888877763           112222111   11111    358887654  98877


Q ss_pred             CcccccceecHHHHHhhhcCC---cc-----------------cccCCCCcHHHHHHHHHHHHHHhhh----hHHHHHHH
Q psy6205         156 GHPVAAVITTKEIAKSFQETG---VE-----------------YFNTYGGNPVSCAVANAVMEVLETE----NLREHALD  211 (224)
Q Consensus       156 G~p~~av~~~~~i~~~~~~~~---~~-----------------~~~T~~~~p~~~aaa~a~l~~~~~~----~l~~~~~~  211 (224)
                      ...+|.+..+++..+.+.+..   ..                 ...+-+-+.....+..++++.+.+.    ...++..+
T Consensus       216 p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~  295 (381)
T d1elua_         216 PAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQ  295 (381)
T ss_dssp             CTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             cchhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhh
Confidence            666788888888877654210   00                 0011134455666777777777543    34677888


Q ss_pred             HHHHHHHhhhhc
Q psy6205         212 VGNQLHTPKKEN  223 (224)
Q Consensus       212 ~g~~l~~~l~~l  223 (224)
                      +.+++.++|+++
T Consensus       296 ~~~~l~~~L~~~  307 (381)
T d1elua_         296 RSEFLWRGLNQL  307 (381)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcC
Confidence            899999999875

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.10  E-value=0.033  Score=46.25  Aligned_cols=135  Identities=8%  Similarity=-0.093  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHccCCCCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCC----ccccccchhhhhcCCCC
Q psy6205          75 AQDVQDLIEAMGRNGKRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGF----GRVGTHWWAFQLQGDDI  142 (224)
Q Consensus        75 ~~~l~~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~----GrtG~~~~~~~~~g~~v  142 (224)
                      +++|++.++..  ..+.+++|++.......|.+.+-++..+.+++.        ...++    .+.+.  ++...-    
T Consensus       180 ~~~l~~~i~~~--~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~--~~~~~~----  251 (445)
T d3bc8a1         180 LKAVEAKIQEL--GPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQ--QGARVG----  251 (445)
T ss_dssp             HHHHHHHHHHH--CGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHH--HHHHHS----
T ss_pred             HHHHHHHHHhc--cccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccch--hccCcC----
Confidence            57788877754  345688999887777778888877777777777        21111    11111  222211    


Q ss_pred             CCchhcc--cccccCCcccccceec-HHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHH
Q psy6205         143 IPDIVTV--GKPMGNGHPVAAVITT-KEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQL  216 (224)
Q Consensus       143 ~pDi~~~--~K~l~~G~p~~av~~~-~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l  216 (224)
                      ..|++++  .|.++++...++++.+ +++.+.+...   +..+-.+.  ......+.+..+..   ....++..++.+++
T Consensus       252 ~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  326 (445)
T d3bc8a1         252 RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKM---YPGRASAS--PSLDVLITLLSLGCSGYRKLLKERKEMFVYL  326 (445)
T ss_dssp             CCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHH---SCSCBCSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcceEEecCccccccCCCCceeeeCChHHHHHHHHH---HhhcccCc--chHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Confidence            2566654  5877765555556665 4444444321   11222222  23333444555433   34555666777777


Q ss_pred             HHhhhh
Q psy6205         217 HTPKKE  222 (224)
Q Consensus       217 ~~~l~~  222 (224)
                      +++|++
T Consensus       327 ~~~L~~  332 (445)
T d3bc8a1         327 STQLKK  332 (445)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777764

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=94.21  E-value=0.2  Score=41.00  Aligned_cols=125  Identities=12%  Similarity=0.055  Sum_probs=80.8

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPV  159 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~  159 (224)
                      +++..|.+--+....|.+.|.++.-+.+++.        +|. +|..-   .-...++    +|+++++  |- .|+--+
T Consensus       162 ~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~-~g~~~---id~~~~~----~D~~~~s~hK~-~gp~G~  232 (408)
T d1t3ia_         162 EKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQS-APHYP---LDVQLID----CDWLVASGHKM-CAPTGI  232 (408)
T ss_dssp             TTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTT-TTTSC---CCHHHHT----CSEEEEEGGGT-TSCTTC
T ss_pred             CCceEEEEecccccccccCcHHHHhhhhhccCceeeecccee-ccccc---ccccccC----CceEEeccccc-cCCCCc
Confidence            5788889988999999999988877777776        222 22111   1222333    7888654  64 444457


Q ss_pred             ccceecHHHHHhhhcCC---ccc----------------ccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHH
Q psy6205         160 AAVITTKEIAKSFQETG---VEY----------------FNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLH  217 (224)
Q Consensus       160 ~av~~~~~i~~~~~~~~---~~~----------------~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~  217 (224)
                      |++..++++........   ...                +-+-+-|..+.++..++++++.+   +++.++...+.+++.
T Consensus       233 g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~  312 (408)
T d1t3ia_         233 GFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLW  312 (408)
T ss_dssp             EEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHh
Confidence            88999999876543210   000                00123366667777788888754   567788888999988


Q ss_pred             Hhhhhc
Q psy6205         218 TPKKEN  223 (224)
Q Consensus       218 ~~l~~l  223 (224)
                      +.++++
T Consensus       313 ~~~~~~  318 (408)
T d1t3ia_         313 QGLGQI  318 (408)
T ss_dssp             HHHHTC
T ss_pred             hhhccC
Confidence            888754

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=93.98  E-value=0.11  Score=41.51  Aligned_cols=72  Identities=6%  Similarity=0.076  Sum_probs=48.7

Q ss_pred             ccccccc-CCcccccceecHHH-HHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEI-AKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i-~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++||.+| .|+-+|.++++++. .+.+.    ....++..+.++..++.++|+--+ -....+++++.-+++.+.|+++
T Consensus       211 S~SK~~~l~GlR~G~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  285 (355)
T d1lc5a_         211 SLTKFYAIPGLRLGYLVNSDDAAMARMR----RQQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQL  285 (355)
T ss_dssp             ESTTTTTCTTTCCEEEECCCHHHHHHHH----HHSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ccccccccccccccceeccchhhhHHHH----hhcCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence            6899998 78899989887554 44443    233467778888888888775321 1234555666677777777765

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.63  E-value=0.029  Score=45.75  Aligned_cols=54  Identities=17%  Similarity=0.108  Sum_probs=38.1

Q ss_pred             Cchh--cccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH
Q psy6205         144 PDIV--TVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL  200 (224)
Q Consensus       144 pDi~--~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~  200 (224)
                      .|++  +++|.++ |.-+|.+++++++++.+...  ....++..+|..+.++.++|+.+
T Consensus       191 ~di~~~S~sK~~~-g~~~G~i~~~~~~i~~~~~~--~~~~g~~~~~~~~~a~~~aL~tl  246 (366)
T d2aeua1         191 ADLVVTSTDKLME-GPRGGLLAGKKELVDKIYIE--GTKFGLEAQPPLLAGIYRALKNF  246 (366)
T ss_dssp             CSEEEEETTSSSS-SCSCEEEEEEHHHHHHHHHH--HHTTTCBCCHHHHHHHHHHHHHC
T ss_pred             ceEEEeccccccc-ccceeEEEecHHHHHHHHHH--HhcccccCCHHHHHHHHHHHHhc
Confidence            4666  4567665 45568899999999988653  22345666788888888888765

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.36  E-value=0.022  Score=48.20  Aligned_cols=21  Identities=43%  Similarity=0.808  Sum_probs=17.9

Q ss_pred             CCC-cceeeccCCceeEEEEee
Q psy6205           3 RYP-LIGDVRGIGLFVGVELVT   23 (224)
Q Consensus         3 ~~p-~v~~vRg~Gl~~gielv~   23 (224)
                      +|| .|++|||+|||+|+|+..
T Consensus       387 ~~~~~i~~vrG~Gl~~~ie~~~  408 (461)
T d1ohwa_         387 RYPQFISRVRGRGTFCSFDTPD  408 (461)
T ss_dssp             HCTTTCEEEEEETTEEEEECSS
T ss_pred             hCCCceEEeeeeeEEEEEEcCC
Confidence            366 689999999999999953

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.82  E-value=0.12  Score=41.07  Aligned_cols=73  Identities=14%  Similarity=0.221  Sum_probs=51.2

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhhhcC
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET-ENLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~-~~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      ++||..+ .|+-+|.+++++++.+.+...    ..++.-++.+..++.+.++..+. +...+..++.-++|.+.|+++|
T Consensus       199 S~SK~~~~~G~R~G~~~~~~~~i~~l~~~----~~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~g  273 (334)
T d2f8ja1         199 TFSKAFSLAAQRVGYVVASEKFIDAYNRV----RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREMG  273 (334)
T ss_dssp             ESTTTSSCTTTCEEEEEECHHHHHHHHHH----SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCccccchhhhhhhhcccchHHHHHHHHh----hcccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHCC
Confidence            6899988 689999999999999988642    23455567777777777665431 2345556666667777777654

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=92.80  E-value=0.021  Score=47.23  Aligned_cols=20  Identities=55%  Similarity=0.938  Sum_probs=18.0

Q ss_pred             CCcceeeccCCceeEEEEee
Q psy6205           4 YPLIGDVRGIGLFVGVELVT   23 (224)
Q Consensus         4 ~p~v~~vRg~Gl~~gielv~   23 (224)
                      +|.|.+|||.|+|+++|+..
T Consensus       318 ~~~v~~vrg~Gl~~~ie~~~  337 (387)
T d1vefa1         318 SPKIREVRGMGLMVGLELKE  337 (387)
T ss_dssp             CTTEEEEEEETTEEEEEESS
T ss_pred             CCceEEEeecceEEEEEEeC
Confidence            68899999999999999953

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.045  Score=45.41  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=18.3

Q ss_pred             CCcceeeccCCceeEEEEeec
Q psy6205           4 YPLIGDVRGIGLFVGVELVTC   24 (224)
Q Consensus         4 ~p~v~~vRg~Gl~~gielv~~   24 (224)
                      ++.|++|||.|+|+++++...
T Consensus       330 ~~~i~~vRg~Gl~~~i~~~~~  350 (404)
T d2byla1         330 SDVVTAVRGKGLLNAIVIKET  350 (404)
T ss_dssp             TTTEEEEEEETTEEEEEECCC
T ss_pred             cccceeeeecccEEEEEEecC
Confidence            578999999999999999643

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=92.13  E-value=0.49  Score=38.76  Aligned_cols=25  Identities=20%  Similarity=0.453  Sum_probs=20.2

Q ss_pred             ccccccc-CCcccccceecHHHHHhh
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSF  172 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~  172 (224)
                      ++||.++ .|+-+|.+++++++....
T Consensus       268 s~SK~~~~~G~RiG~~~~~~~~i~~~  293 (431)
T d1m7ya_         268 SLSKDLGLPGFRVGAIYSNDDMVVAA  293 (431)
T ss_dssp             ESSSSSCCGGGCEEEEEESCHHHHHH
T ss_pred             cCcccccCCCCccceeccchhhhHHH
Confidence            5899998 688899999988765443

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.89  Score=36.91  Aligned_cols=76  Identities=13%  Similarity=0.134  Sum_probs=50.8

Q ss_pred             hccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHh---h------hhHHHHHHHHHHHH
Q psy6205         147 VTVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLE---T------ENLREHALDVGNQL  216 (224)
Q Consensus       147 ~~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~---~------~~l~~~~~~~g~~l  216 (224)
                      ..++|.++ .|+-+|.+++.+++++.+...  ....+++.+.++..++.+.|.--.   +      ..+.++.++.-+.|
T Consensus       240 ~S~SK~~~~pG~RvG~~v~~~~~~~~l~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l  317 (418)
T d1w7la_         240 GSAGKTFSATGWKVGWVLGPDHIMKHLRTV--HQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHM  317 (418)
T ss_dssp             EEHHHHTTCGGGCCEEEECCHHHHHHHHHH--HHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHH
T ss_pred             cccCccccCCCCcccccccchhhhhhhccc--cccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhh
Confidence            36899988 589999999999998887643  223456666666666666654321   1      23455566677777


Q ss_pred             HHhhhhcC
Q psy6205         217 HTPKKENN  224 (224)
Q Consensus       217 ~~~l~~l~  224 (224)
                      .+.|+++|
T Consensus       318 ~~~L~~~g  325 (418)
T d1w7la_         318 IRSLQSVG  325 (418)
T ss_dssp             HHHHHTTT
T ss_pred             hhhhhhcC
Confidence            77777653

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=91.50  E-value=0.84  Score=36.65  Aligned_cols=74  Identities=12%  Similarity=0.055  Sum_probs=43.1

Q ss_pred             hhcccccccCCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHhhh
Q psy6205         146 IVTVGKPMGNGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETE----NLREHALDVGNQLHTPKK  221 (224)
Q Consensus       146 i~~~~K~l~~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~----~l~~~~~~~g~~l~~~l~  221 (224)
                      +-+++|.++.|+.+|.+++++++.+.+...  ....+...++....+..+.++....+    .+.+..++.-+.+.+.|+
T Consensus       238 ~~S~SK~~~~G~RiG~~i~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  315 (403)
T d1wsta1         238 LGTFSKILAPGFRIGWVAAHPHLIRKMEIA--KQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALE  315 (403)
T ss_dssp             EEESTTTTCGGGCCEEEEECHHHHHHHHHH--HHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EccccceecCcccccccccchHHHHHHHHH--HhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            336899998789999999999998876532  12234444555544444444333222    334444444444455444

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=91.20  E-value=0.54  Score=37.93  Aligned_cols=74  Identities=11%  Similarity=-0.002  Sum_probs=47.8

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .+||.++ .|+-+|.+++++++.+.+...  ....+...++.+..++...++..++  +.+.+..++.-+++.+.|++.
T Consensus       234 S~SK~~~~~GlRvG~~~~~~~~~~~~~~~--~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  310 (388)
T d1j32a_         234 GFAKTYAMTGWRVGFLAGPVPLVKAATKI--QGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM  310 (388)
T ss_dssp             ESTTTTTCTTTCCEEEECCHHHHHHHHHH--HHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CChhhhhcchhHeEEEEECHHHHHHHHHh--hhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5899998 689999999999999877542  2223445556666666555543322  234555566666677766653

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=91.04  E-value=0.85  Score=36.96  Aligned_cols=130  Identities=13%  Similarity=0.037  Sum_probs=82.7

Q ss_pred             CCCceEEEEccccCCCCcccCCHHHHHHHHHH----HHhCCccccccchhhhhcCCCCCCchhc--ccccccCCcccccc
Q psy6205          89 GKRPCAFFAESLQSCGGQIIPPANYLREVYKH----VQVGFGRVGTHWWAFQLQGDDIIPDIVT--VGKPMGNGHPVAAV  162 (224)
Q Consensus        89 ~~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----v~tG~GrtG~~~~~~~~~g~~v~pDi~~--~~K~l~~G~p~~av  162 (224)
                      .+++..|.+.-+....|.+.|-++..+.+++.    +.-|---.|....-.+.+    .+|+++  .=|-+| ..-+|++
T Consensus       161 ~~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~----~~D~~~~s~hK~~G-p~G~g~l  235 (405)
T d1jf9a_         161 DEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQAL----DCDFYVFSGHKLYG-PTGIGIL  235 (405)
T ss_dssp             CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH----TCSEEEEEGGGTTS-CSSCEEE
T ss_pred             cCCcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhc----CCceeecccccccc-CCCceee
Confidence            35788899999999999999999999999988    111110112101122233    388776  457643 2336889


Q ss_pred             eecHHHHHhhhcCCccc--------------------ccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHh
Q psy6205         163 ITTKEIAKSFQETGVEY--------------------FNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHTP  219 (224)
Q Consensus       163 ~~~~~i~~~~~~~~~~~--------------------~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~~  219 (224)
                      ..++++.+.+.......                    +.+=+-|..++++..++++++++   +++.++.+.+.+++.+.
T Consensus       236 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~  315 (405)
T d1jf9a_         236 YVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQ  315 (405)
T ss_dssp             EECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             eechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhh
Confidence            99999877654210000                    00113467778888888888754   56777778888888887


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      ++.+
T Consensus       316 l~~~  319 (405)
T d1jf9a_         316 LESV  319 (405)
T ss_dssp             HTTS
T ss_pred             hhcC
Confidence            7654

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.97  E-value=1.6  Score=34.44  Aligned_cols=124  Identities=8%  Similarity=0.014  Sum_probs=74.9

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH----------HHhCCccccccchhhhhcCCCCCCchhcc--cccccCCcc
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH----------VQVGFGRVGTHWWAFQLQGDDIIPDIVTV--GKPMGNGHP  158 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~--~K~l~~G~p  158 (224)
                      ++..+.+--+..+.|...+.+..-+.+++.          +|+ +|-.   -.-.+.+|    .|++++  -|.++|---
T Consensus       135 ~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs-~g~~---pid~~~~g----iD~~~~s~~K~l~gP~G  206 (382)
T d2bkwa1         135 SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCS-IGCE---EFEFDEWG----VDFALTASQKAIGAPAG  206 (382)
T ss_dssp             CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTT-TTTS---CCCTTTTT----CSEEEEESSSTTCCCSC
T ss_pred             cchheeeeeccccccccccchhhhhhccccccceeeeeecccc-cccc---cccccccC----eeEEeecccccCcCCCc
Confidence            445566666667778888877777776665          222 2211   11122233    687765  488865344


Q ss_pred             cccceecHHHHHhhhcC---C--cc-------------------cccCCCCcHHHHHHHHHHHHHHhhhh---HHHHHHH
Q psy6205         159 VAAVITTKEIAKSFQET---G--VE-------------------YFNTYGGNPVSCAVANAVMEVLETEN---LREHALD  211 (224)
Q Consensus       159 ~~av~~~~~i~~~~~~~---~--~~-------------------~~~T~~~~p~~~aaa~a~l~~~~~~~---l~~~~~~  211 (224)
                      +|.+..+++..+.....   +  ..                   ....++-+.....+..++|+.+.+++   ..++.++
T Consensus       207 ~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~  286 (382)
T d2bkwa1         207 LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHRE  286 (382)
T ss_dssp             EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            57899999987654321   0  00                   01123344557778888999997654   4456677


Q ss_pred             HHHHHHHhhhh
Q psy6205         212 VGNQLHTPKKE  222 (224)
Q Consensus       212 ~g~~l~~~l~~  222 (224)
                      +.+++++++.+
T Consensus       287 l~~~l~~~l~~  297 (382)
T d2bkwa1         287 MSDWFKDSLVN  297 (382)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHhhh
Confidence            88888887754

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=90.88  E-value=0.18  Score=38.26  Aligned_cols=81  Identities=12%  Similarity=0.003  Sum_probs=42.1

Q ss_pred             CchhcccccccCCcccccceecHHHHHh-hhcCCcccccCCCCcHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh
Q psy6205         144 PDIVTVGKPMGNGHPVAAVITTKEIAKS-FQETGVEYFNTYGGNPVSCAVANAVMEVLETENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       144 pDi~~~~K~l~~G~p~~av~~~~~i~~~-~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      .++.++++..+.+.+............. .........++......+.+++.+.++........++...+..++.+.|++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  272 (340)
T d1svva_         193 TDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEA  272 (340)
T ss_dssp             CSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeecCCccccccccccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhc
Confidence            3455555555544433334433222211 111111223455555555555555555444456777788888888888887


Q ss_pred             cC
Q psy6205         223 NN  224 (224)
Q Consensus       223 l~  224 (224)
                      +|
T Consensus       273 ~g  274 (340)
T d1svva_         273 CG  274 (340)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=90.26  E-value=0.29  Score=39.02  Aligned_cols=72  Identities=13%  Similarity=0.152  Sum_probs=43.3

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH--Hh-hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV--LE-TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~--~~-~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      +|||.+| .|+-+|.+++++++++.+...    ...+..+..+..++.+++..  .+ .....+++.+.-+++.+.|+++
T Consensus       209 S~SK~~~laGlRiGy~i~~~~~i~~l~~~----~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~  284 (354)
T d1fg7a_         209 TLSKAFALAGLRCGFTLANEEVINLLMKV----IAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI  284 (354)
T ss_dssp             ESSSTTCCGGGCCEEEEECHHHHHHHHHH----SCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCccccCCCccccccccccchhhhhhhhh----cCccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhC
Confidence            7999998 789999999999999988642    23344444444444333321  11 1223344445555666666654

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.39  E-value=2  Score=33.43  Aligned_cols=126  Identities=10%  Similarity=0.011  Sum_probs=79.5

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPV  159 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~  159 (224)
                      .++..+.+--+....|.+.|.++.-+.+++.        +|+ +|..-   +-.+.    ...|+++++  |.++|-.-+
T Consensus       126 ~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs-~G~~~---~d~~~----~~~D~~~~s~~K~l~gp~G~  197 (361)
T d1m32a_         126 PTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSS-FGGIP---MDIAA----LHIDYLISSANKCIQGVPGF  197 (361)
T ss_dssp             TTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTT-TTTSC---CCTTT----TTCSEEEEESSSTTCCCSSE
T ss_pred             cCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccc-cCccc---ccccc----cccceEEeeecccccCCCCc
Confidence            4666777777777789999999998888887        443 32211   11222    347988887  888763335


Q ss_pred             ccceecHHHHHhhhcCCc----------------ccccCCCCcHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHh
Q psy6205         160 AAVITTKEIAKSFQETGV----------------EYFNTYGGNPVSCAVANAVMEVLETEN----LREHALDVGNQLHTP  219 (224)
Q Consensus       160 ~av~~~~~i~~~~~~~~~----------------~~~~T~~~~p~~~aaa~a~l~~~~~~~----l~~~~~~~g~~l~~~  219 (224)
                      |.+..+++..+.......                .....++.+...+.+...+++.+.++.    ...+.+...+.+.+.
T Consensus       198 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  277 (361)
T d1m32a_         198 AFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAG  277 (361)
T ss_dssp             EEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHH
Confidence            778999988876543210                011244556667777778887775543    334456666666666


Q ss_pred             hhhc
Q psy6205         220 KKEN  223 (224)
Q Consensus       220 l~~l  223 (224)
                      ++++
T Consensus       278 ~~~~  281 (361)
T d1m32a_         278 MRAL  281 (361)
T ss_dssp             HHHT
T ss_pred             Hhhc
Confidence            6654

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=88.90  E-value=2.2  Score=34.39  Aligned_cols=75  Identities=11%  Similarity=0.102  Sum_probs=47.2

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHH----hh-----hhHHHHHHHHHHHHH
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVL----ET-----ENLREHALDVGNQLH  217 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~----~~-----~~l~~~~~~~g~~l~  217 (224)
                      .+||.++ .|+-+|.+++.+++.+.+...  ....+++.++....++.+.+..-    +.     ..+.++.+..-+++.
T Consensus       241 S~SK~~~~pGlRiG~~~~~~~~i~~~~~~--~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~  318 (418)
T d2r5ea1         241 SAGKTFSLTGWKIGWAYGPEALLKNLQMV--HQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMA  318 (418)
T ss_dssp             EHHHHTTCGGGCCEEEESCHHHHHHHHHH--HTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred             cCCccccCCCcccccccccchhhhhhhhc--ccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHH
Confidence            6899998 789999999999998887642  22234555555444444444321    11     234455566667777


Q ss_pred             HhhhhcC
Q psy6205         218 TPKKENN  224 (224)
Q Consensus       218 ~~l~~l~  224 (224)
                      +.|+++|
T Consensus       319 ~~L~~~g  325 (418)
T d2r5ea1         319 SFLAEVG  325 (418)
T ss_dssp             HHHHHTT
T ss_pred             hhHhhcC
Confidence            7777653

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=87.63  E-value=1.4  Score=35.02  Aligned_cols=126  Identities=14%  Similarity=0.113  Sum_probs=68.3

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH------------HHhCCccccccchhhhhcCCCCCCc--hh--cccccc
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH------------VQVGFGRVGTHWWAFQLQGDDIIPD--IV--TVGKPM  153 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~------------v~tG~GrtG~~~~~~~~~g~~v~pD--i~--~~~K~l  153 (224)
                      +++.++++-.-..-.|.+. +.+.++++-++            +...+...+. ......    ..+|  ++  .++|.+
T Consensus       158 ~~~~~~~l~nP~NPtG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~-~~~~~~----~~~~~~~v~~s~sK~~  231 (389)
T d2gb3a1         158 ERTKGIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASALS----IESDKVVVIDSVSKKF  231 (389)
T ss_dssp             TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCGGG----SCCTTEEEEEESTTTT
T ss_pred             cCccEEEeCCCCccccccc-hHHHHHHHHhhcccCCEEEEEeccccccccccc-cccccc----cccccccccccccccc
Confidence            4555655533233466555 66666666666            3333322332 111111    2223  22  467888


Q ss_pred             cC-CcccccceecHH-HHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhhhhcC
Q psy6205         154 GN-GHPVAAVITTKE-IAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLET--ENLREHALDVGNQLHTPKKENN  224 (224)
Q Consensus       154 ~~-G~p~~av~~~~~-i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~g~~l~~~l~~l~  224 (224)
                      +. |+-+|.+++..+ +...+..   ...+.++.+++...++.+.++..++  +.+.++.++.-+.+.+.|++++
T Consensus       232 ~~~GlRiG~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  303 (389)
T d2gb3a1         232 SACGARVGCLITRNEELISHAMK---LAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHG  303 (389)
T ss_dssp             TCGGGCCEEEECSCHHHHHHHHH---HHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCcccceeeeeccchhHHHHHhh---hhhccccccccccccccccccccchhcccccccccccchhhhhhhhhhc
Confidence            74 799998888554 4443322   1224455566776666666543322  3456667777777888887653

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=86.38  E-value=1  Score=36.70  Aligned_cols=26  Identities=19%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             ccccccc-CCccccccee-cHHHHHhhh
Q psy6205         148 TVGKPMG-NGHPVAAVIT-TKEIAKSFQ  173 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~-~~~i~~~~~  173 (224)
                      .+||.++ .|+-+|.+++ ++++.+.+.
T Consensus       265 s~SK~~~~~GlRiG~~~~~~~~l~~~~~  292 (428)
T d1iaya_         265 SLSKDMGLPGFRVGIIYSFNDDVVNCAR  292 (428)
T ss_dssp             ESTTTSSCGGGCEEEEEESCHHHHHHHH
T ss_pred             cCCCcccCCCcccccccccccchhhhhh
Confidence            6899997 5899999887 566766654

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.83  E-value=2.8  Score=33.15  Aligned_cols=73  Identities=12%  Similarity=0.089  Sum_probs=41.6

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHH---Hh-hhhHHHHHHHHHHHHHHhhhh
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEV---LE-TENLREHALDVGNQLHTPKKE  222 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~---~~-~~~l~~~~~~~g~~l~~~l~~  222 (224)
                      +|||.++ .|+-+|.+++.+++.+.+...  ....+...+.....++.+.|+.   .+ -....++.++.-..+.+.|++
T Consensus       229 S~SK~~~~~GlR~G~ii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  306 (388)
T d1gdea_         229 GFSKTFAMTGWRLGFVAAPSWIIERMVKF--QMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE  306 (388)
T ss_dssp             ESTTTTTCGGGCCEEEECCHHHHHHHHHH--HHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhhccCccccEEEEEeeccchhhhhhc--cccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhh
Confidence            6899998 789999999999988877643  2223444444444444444421   11 122333444444455555543

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=85.61  E-value=0.62  Score=38.39  Aligned_cols=132  Identities=13%  Similarity=-0.018  Sum_probs=72.2

Q ss_pred             CceEEEEccccCCCCcccCCHHHHHHHHHH-------HHhCCcc--ccccchhhhhcC----CCCCCchhc--ccccccC
Q psy6205          91 RPCAFFAESLQSCGGQIIPPANYLREVYKH-------VQVGFGR--VGTHWWAFQLQG----DDIIPDIVT--VGKPMGN  155 (224)
Q Consensus        91 ~iaavi~Epv~~~~G~~~~~~~~l~~~~~~-------v~tG~Gr--tG~~~~~~~~~g----~~v~pDi~~--~~K~l~~  155 (224)
                      +...+++..+.+..|.+.+.++..+.+++.       -..|.|-  .+.....+...|    .....|+++  +.|.+|+
T Consensus       173 ~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~  252 (462)
T d1c4ka2         173 RPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG  252 (462)
T ss_dssp             CCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC
T ss_pred             CCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCccccc
Confidence            344566667778889999988888888877       1111111  110000011111    011237764  6898874


Q ss_pred             Ccccccce-ecHHHHHhhhc--------CCcccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhhhc
Q psy6205         156 GHPVAAVI-TTKEIAKSFQE--------TGVEYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       156 G~p~~av~-~~~~i~~~~~~--------~~~~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      .-. |+++ .+.+.......        .......|.+.+...++...++..+++.   +.+.++..++.++++++++++
T Consensus       253 ~~~-g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~  331 (462)
T d1c4ka2         253 FSQ-TSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKA  331 (462)
T ss_dssp             CTT-CEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccc-eEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            211 2333 33222111000        0012235667777777777777777753   467788888999999998765

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=85.60  E-value=0.38  Score=38.33  Aligned_cols=77  Identities=16%  Similarity=0.180  Sum_probs=50.4

Q ss_pred             hhcccccccC-CcccccceecHHHHHhhhcCCcccccCCCCcHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHhh
Q psy6205         146 IVTVGKPMGN-GHPVAAVITTKEIAKSFQETGVEYFNTYGGNPVSCAVANAVMEVLETE----NLREHALDVGNQLHTPK  220 (224)
Q Consensus       146 i~~~~K~l~~-G~p~~av~~~~~i~~~~~~~~~~~~~T~~~~p~~~aaa~a~l~~~~~~----~l~~~~~~~g~~l~~~l  220 (224)
                      +.++||..+. |+.+|.+++.+++.+.+...  ....+.+.++....++.++++.....    .+.+..++.-+++.+.|
T Consensus       217 ~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l  294 (368)
T d1v2da_         217 VGSAGKRLEATGYRVGWIVGPKEFMPRLAGM--RQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGL  294 (368)
T ss_dssp             EEEHHHHTTCGGGCCEEEECCTTTHHHHHHH--HHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccccccccccccccccccccchhhhh--hhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhH
Confidence            4467887774 68999999999988877543  23345566666665555666554333    34444566667788888


Q ss_pred             hhcC
Q psy6205         221 KENN  224 (224)
Q Consensus       221 ~~l~  224 (224)
                      +++|
T Consensus       295 ~~~g  298 (368)
T d1v2da_         295 RAMG  298 (368)
T ss_dssp             HHTT
T ss_pred             HhcC
Confidence            7654

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.40  E-value=4.9  Score=31.46  Aligned_cols=124  Identities=14%  Similarity=0.093  Sum_probs=74.9

Q ss_pred             ceEEEEccccCCCCcccCCHHHHHHHHHH--------HHhCCccccccchhhhhcCCCCCCchhccc--ccccCCccccc
Q psy6205          92 PCAFFAESLQSCGGQIIPPANYLREVYKH--------VQVGFGRVGTHWWAFQLQGDDIIPDIVTVG--KPMGNGHPVAA  161 (224)
Q Consensus        92 iaavi~Epv~~~~G~~~~~~~~l~~~~~~--------v~tG~GrtG~~~~~~~~~g~~v~pDi~~~~--K~l~~G~p~~a  161 (224)
                      ...+.+--+-...|.+.|-++.-+.+++.        +|+ +   |....-.+.    ...|+++++  |.+++-.-++.
T Consensus       145 ~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs-~---g~~~~d~~~----~~~D~~~~s~~K~~~gp~g~~~  216 (388)
T d1h0ca_         145 PVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVAS-L---GGTPLYMDR----QGIDILYSGSQKALNAPPGTSL  216 (388)
T ss_dssp             CSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTT-T---TTSCCCTTT----TTCSEEEEESSSTTCCCTTCEE
T ss_pred             cceEEEeeeeeccccccCHHHHHHHhhcccccceeccccc-c---ccccccccc----cccceecccccccccCCCceEE
Confidence            34555555667789999999998888887        332 2   210111222    336777664  77765334466


Q ss_pred             ceecHHHHHhhhcCC---c------------------ccccCCCCcHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHH
Q psy6205         162 VITTKEIAKSFQETG---V------------------EYFNTYGGNPVSCAVANAVMEVLET---ENLREHALDVGNQLH  217 (224)
Q Consensus       162 v~~~~~i~~~~~~~~---~------------------~~~~T~~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~g~~l~  217 (224)
                      +..+++..+.+....   .                  ....+.+-+..+..+..++++.+.+   +...++..++.++++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~  296 (388)
T d1h0ca_         217 ISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLH  296 (388)
T ss_dssp             EEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             EeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHH
Confidence            778887766553210   0                  0011223455577788888888865   356667778888888


Q ss_pred             Hhhhhc
Q psy6205         218 TPKKEN  223 (224)
Q Consensus       218 ~~l~~l  223 (224)
                      +.++++
T Consensus       297 ~~~~~~  302 (388)
T d1h0ca_         297 GRLQAL  302 (388)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            888764

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=82.08  E-value=3.2  Score=32.82  Aligned_cols=27  Identities=19%  Similarity=0.309  Sum_probs=23.3

Q ss_pred             ccccccc-CCcccccceecHHHHHhhhc
Q psy6205         148 TVGKPMG-NGHPVAAVITTKEIAKSFQE  174 (224)
Q Consensus       148 ~~~K~l~-~G~p~~av~~~~~i~~~~~~  174 (224)
                      ++||.++ .|+-+|.+++++++.+.+..
T Consensus       231 s~SK~~~~~GlR~G~~~~~~~~i~~~~~  258 (382)
T d1b5pa_         231 GAAKAFAMTGWRIGYACGPKEVIKAMAS  258 (382)
T ss_dssp             ESTTTTTCGGGCCEEEECCHHHHHHHHH
T ss_pred             cchhhccCcHhheEEEEECHHHHHHHHH
Confidence            5899998 78999999999999887753

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=81.82  E-value=3  Score=32.99  Aligned_cols=129  Identities=10%  Similarity=-0.027  Sum_probs=68.5

Q ss_pred             CCceEEEEccccCCCCcccCCHHHHHHHHHH----HHhCCccccccchhhhhcCCCCCCchhcc--cccccCCcccccce
Q psy6205          90 KRPCAFFAESLQSCGGQIIPPANYLREVYKH----VQVGFGRVGTHWWAFQLQGDDIIPDIVTV--GKPMGNGHPVAAVI  163 (224)
Q Consensus        90 ~~iaavi~Epv~~~~G~~~~~~~~l~~~~~~----v~tG~GrtG~~~~~~~~~g~~v~pDi~~~--~K~l~~G~p~~av~  163 (224)
                      +++.+|++.-+....|.+.|.++..+.+++.    +.-+.--.|..-.-...    ..+|++++  -|-+| +.-+|.+.
T Consensus       142 ~~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~----~~~D~~~~s~~k~~g-~~g~g~~~  216 (391)
T d1p3wa_         142 DDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQ----LKVDLMSFSGHKIYG-PKGIGALY  216 (391)
T ss_dssp             TTEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTT----SCCSEEEEESTTTTS-CSSCEEEE
T ss_pred             CCcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchh----ccccccccccccccC-CCceEEEE
Confidence            5778999998988899999988888888777    11111011110011122    34676653  45442 23457788


Q ss_pred             ecHHHHHhhhcCC----ccc-ccCCCCcHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhhhhc
Q psy6205         164 TTKEIAKSFQETG----VEY-FNTYGGNPVSCAVANAVMEVLE--TENLREHALDVGNQLHTPKKEN  223 (224)
Q Consensus       164 ~~~~i~~~~~~~~----~~~-~~T~~~~p~~~aaa~a~l~~~~--~~~l~~~~~~~g~~l~~~l~~l  223 (224)
                      ++++..+...+..    ... ..+..-+....++....++...  .....++++++..++.++|+++
T Consensus       217 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  283 (391)
T d1p3wa_         217 VRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDI  283 (391)
T ss_dssp             ECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred             EecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence            8876655443220    000 1122222222222222333332  2345677888888888888764